Query 003258
Match_columns 835
No_of_seqs 460 out of 4751
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 20:04:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00409 recombination and DNA 100.0 4E-120 9E-125 1089.4 80.8 752 1-835 26-782 (782)
2 TIGR01069 mutS2 MutS2 family p 100.0 2E-117 4E-122 1063.6 81.0 741 1-835 26-771 (771)
3 COG1193 Mismatch repair ATPase 100.0 2E-100 5E-105 900.2 59.5 725 1-834 24-753 (753)
4 TIGR01070 mutS1 DNA mismatch r 100.0 1.6E-70 3.4E-75 663.6 43.8 484 1-538 284-781 (840)
5 PRK05399 DNA mismatch repair p 100.0 9.5E-68 2.1E-72 642.8 44.1 485 1-538 298-796 (854)
6 COG0249 MutS Mismatch repair A 100.0 2.3E-63 5.1E-68 595.2 40.5 490 1-540 296-798 (843)
7 KOG0218 Mismatch repair MSH3 [ 100.0 1.2E-48 2.5E-53 436.3 38.0 495 1-537 494-1026(1070)
8 KOG0219 Mismatch repair ATPase 100.0 2.4E-45 5.3E-50 417.8 34.7 486 1-537 326-833 (902)
9 KOG0221 Mismatch repair ATPase 100.0 1.1E-43 2.4E-48 391.9 29.2 486 2-538 281-793 (849)
10 KOG0217 Mismatch repair ATPase 100.0 3.1E-42 6.7E-47 399.6 29.7 491 1-537 574-1088(1125)
11 KOG0220 Mismatch repair ATPase 100.0 2.4E-41 5.1E-46 379.8 34.4 481 1-537 294-810 (867)
12 PF00488 MutS_V: MutS domain V 100.0 1.8E-40 3.9E-45 349.0 12.4 228 273-538 1-232 (235)
13 cd03285 ABC_MSH2_euk MutS2 hom 100.0 4E-37 8.7E-42 321.3 15.4 196 340-537 18-220 (222)
14 cd03286 ABC_MSH6_euk MutS6 hom 100.0 2E-37 4.3E-42 321.9 12.4 190 340-531 18-218 (218)
15 cd03280 ABC_MutS2 MutS2 homolo 100.0 6.8E-37 1.5E-41 314.9 13.1 184 340-523 17-200 (200)
16 cd03287 ABC_MSH3_euk MutS3 hom 100.0 1.1E-36 2.4E-41 317.1 13.2 188 342-531 23-222 (222)
17 cd03284 ABC_MutS1 MutS1 homolo 100.0 2.7E-35 5.9E-40 306.4 15.1 194 340-534 19-215 (216)
18 cd03281 ABC_MSH5_euk MutS5 hom 100.0 1.2E-34 2.5E-39 301.0 14.1 183 340-523 17-213 (213)
19 cd03282 ABC_MSH4_euk MutS4 hom 100.0 1.6E-34 3.6E-39 297.7 13.9 179 342-522 21-203 (204)
20 smart00534 MUTSac ATPase domai 100.0 2.8E-34 6E-39 292.1 11.6 181 353-534 1-184 (185)
21 smart00533 MUTSd DNA-binding d 100.0 1.4E-32 3E-37 300.2 21.6 284 1-301 15-306 (308)
22 cd03243 ABC_MutS_homologs The 100.0 2.4E-33 5.2E-38 289.0 12.6 182 340-523 19-202 (202)
23 cd03283 ABC_MutS-like MutS-lik 100.0 9.7E-31 2.1E-35 268.9 14.6 181 340-523 15-199 (199)
24 PRK10636 putative ABC transpor 100.0 3.1E-28 6.8E-33 290.8 28.6 169 323-497 309-511 (638)
25 COG1120 FepC ABC-type cobalami 100.0 4.1E-29 8.9E-34 262.6 16.2 167 326-494 2-220 (258)
26 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.9E-29 8.4E-34 261.5 13.9 162 325-488 3-214 (254)
27 COG1126 GlnQ ABC-type polar am 100.0 9.1E-29 2E-33 248.9 15.6 166 326-494 2-217 (240)
28 COG0488 Uup ATPase components 100.0 2.9E-28 6.4E-33 281.5 18.9 307 127-497 176-519 (530)
29 COG1127 Ttg2A ABC-type transpo 100.0 1.9E-28 4.1E-33 250.1 14.9 167 325-494 7-227 (263)
30 PRK11147 ABC transporter ATPas 99.9 3.6E-26 7.7E-31 273.5 26.8 172 323-500 316-525 (635)
31 COG1116 TauB ABC-type nitrate/ 99.9 4.1E-27 8.9E-32 243.4 15.8 163 325-489 2-207 (248)
32 COG1131 CcmA ABC-type multidru 99.9 2.5E-27 5.3E-32 257.6 14.5 167 326-495 4-219 (293)
33 COG4555 NatA ABC-type Na+ tran 99.9 2.7E-27 5.9E-32 235.1 10.4 159 326-494 1-214 (245)
34 PRK13536 nodulation factor exp 99.9 7.2E-27 1.6E-31 258.8 15.1 169 324-494 39-253 (340)
35 PRK13537 nodulation ABC transp 99.9 8E-27 1.7E-31 255.4 14.8 168 325-494 6-219 (306)
36 COG1125 OpuBA ABC-type proline 99.9 6.6E-27 1.4E-31 239.8 12.6 160 326-494 1-217 (309)
37 TIGR00960 3a0501s02 Type II (G 99.9 1.8E-26 3.8E-31 240.0 14.5 163 326-490 1-215 (216)
38 COG1136 SalX ABC-type antimicr 99.9 2.1E-26 4.5E-31 237.7 14.5 165 326-491 1-220 (226)
39 cd03259 ABC_Carb_Solutes_like 99.9 2.1E-26 4.6E-31 238.9 14.1 166 327-493 1-211 (213)
40 TIGR01288 nodI ATP-binding ABC 99.9 2.3E-26 5E-31 251.6 15.0 168 325-494 3-216 (303)
41 COG4152 ABC-type uncharacteriz 99.9 2E-26 4.3E-31 234.8 12.7 167 326-495 2-212 (300)
42 cd03226 ABC_cobalt_CbiO_domain 99.9 3.2E-26 6.9E-31 236.3 13.5 161 329-491 2-204 (205)
43 PRK11247 ssuB aliphatic sulfon 99.9 4.7E-26 1E-30 243.3 15.2 170 324-494 10-215 (257)
44 cd03266 ABC_NatA_sodium_export 99.9 4.5E-26 9.8E-31 237.2 14.1 166 326-493 1-216 (218)
45 cd03265 ABC_DrrA DrrA is the A 99.9 5.1E-26 1.1E-30 237.3 14.4 167 327-494 1-213 (220)
46 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 4.6E-26 1E-30 237.1 14.1 162 327-490 1-217 (218)
47 TIGR02673 FtsE cell division A 99.9 5.6E-26 1.2E-30 235.8 14.5 162 326-489 1-213 (214)
48 cd03293 ABC_NrtD_SsuB_transpor 99.9 6.1E-26 1.3E-30 236.7 14.4 166 327-493 1-214 (220)
49 cd03214 ABC_Iron-Siderophores_ 99.9 7.5E-26 1.6E-30 229.0 14.2 154 329-492 2-177 (180)
50 cd03261 ABC_Org_Solvent_Resist 99.9 7E-26 1.5E-30 238.6 14.4 166 327-494 1-218 (235)
51 cd03258 ABC_MetN_methionine_tr 99.9 8.2E-26 1.8E-30 237.7 14.9 168 326-494 1-222 (233)
52 cd03301 ABC_MalK_N The N-termi 99.9 7.4E-26 1.6E-30 234.7 14.0 166 327-493 1-211 (213)
53 cd03268 ABC_BcrA_bacitracin_re 99.9 6.7E-26 1.5E-30 234.3 13.5 164 327-492 1-205 (208)
54 cd03269 ABC_putative_ATPase Th 99.9 7.5E-26 1.6E-30 234.3 13.8 165 327-493 1-208 (210)
55 PRK11248 tauB taurine transpor 99.9 9.8E-26 2.1E-30 240.7 14.9 167 326-493 1-211 (255)
56 cd03225 ABC_cobalt_CbiO_domain 99.9 8.3E-26 1.8E-30 234.0 13.6 159 329-489 2-210 (211)
57 cd03218 ABC_YhbG The ABC trans 99.9 1E-25 2.2E-30 236.7 14.4 165 327-493 1-213 (232)
58 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.3E-25 2.7E-30 236.9 14.7 167 326-494 1-213 (236)
59 COG1122 CbiO ABC-type cobalt t 99.9 9.3E-26 2E-30 236.5 13.6 168 325-494 2-220 (235)
60 PRK10908 cell division protein 99.9 1.3E-25 2.7E-30 234.7 14.3 165 326-492 1-216 (222)
61 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.4E-25 2.9E-30 232.5 14.2 166 327-493 1-209 (211)
62 cd03296 ABC_CysA_sulfate_impor 99.9 1.5E-25 3.3E-30 236.8 14.6 167 326-494 2-218 (239)
63 PRK13638 cbiO cobalt transport 99.9 1.4E-25 3.1E-30 241.5 14.6 167 326-494 1-217 (271)
64 TIGR03522 GldA_ABC_ATP gliding 99.9 1.5E-25 3.2E-30 245.0 14.9 166 326-494 2-213 (301)
65 PRK09536 btuD corrinoid ABC tr 99.9 1.4E-25 3.1E-30 252.8 14.9 167 326-494 3-220 (402)
66 COG2884 FtsE Predicted ATPase 99.9 2.1E-25 4.5E-30 220.1 14.0 167 326-495 1-219 (223)
67 cd03262 ABC_HisP_GlnQ_permease 99.9 1.7E-25 3.6E-30 232.0 14.1 162 327-490 1-212 (213)
68 PRK09493 glnQ glutamine ABC tr 99.9 1.8E-25 3.9E-30 236.3 14.5 167 326-494 1-217 (240)
69 COG3638 ABC-type phosphate/pho 99.9 2.5E-25 5.5E-30 226.7 14.9 169 325-495 2-230 (258)
70 TIGR02314 ABC_MetN D-methionin 99.9 1.8E-25 3.9E-30 247.6 14.8 166 326-493 1-221 (343)
71 PRK11831 putative ABC transpor 99.9 2.3E-25 5E-30 239.6 15.1 169 325-494 6-225 (269)
72 PRK11153 metN DL-methionine tr 99.9 1.8E-25 4E-30 248.3 14.8 168 326-494 1-222 (343)
73 TIGR02211 LolD_lipo_ex lipopro 99.9 2.4E-25 5.2E-30 232.2 14.7 164 326-491 1-219 (221)
74 PRK10771 thiQ thiamine transpo 99.9 2.6E-25 5.6E-30 233.9 14.7 168 326-494 1-211 (232)
75 PRK10584 putative ABC transpor 99.9 3.3E-25 7.2E-30 232.3 15.2 167 325-492 5-225 (228)
76 PRK11264 putative amino-acid A 99.9 2.9E-25 6.2E-30 236.0 14.9 167 326-494 3-225 (250)
77 cd03292 ABC_FtsE_transporter F 99.9 2.1E-25 4.6E-30 231.3 13.5 162 327-490 1-213 (214)
78 COG3840 ThiQ ABC-type thiamine 99.9 2E-25 4.3E-30 218.5 12.2 161 326-495 1-212 (231)
79 cd03224 ABC_TM1139_LivF_branch 99.9 2.6E-25 5.6E-30 232.0 14.0 165 327-493 1-212 (222)
80 TIGR02315 ABC_phnC phosphonate 99.9 4.5E-25 9.8E-30 233.4 16.0 167 326-493 1-226 (243)
81 PRK11629 lolD lipoprotein tran 99.9 4.1E-25 8.9E-30 232.6 15.3 167 325-493 4-225 (233)
82 PRK11650 ugpC glycerol-3-phosp 99.9 3E-25 6.4E-30 247.5 14.8 168 326-494 3-216 (356)
83 PRK10895 lipopolysaccharide AB 99.9 3.4E-25 7.3E-30 234.3 14.4 167 326-494 3-218 (241)
84 PRK13647 cbiO cobalt transport 99.9 3.9E-25 8.4E-30 238.5 14.9 167 326-494 4-219 (274)
85 cd03219 ABC_Mj1267_LivG_branch 99.9 5.5E-25 1.2E-29 231.7 15.7 166 327-494 1-224 (236)
86 PRK11231 fecE iron-dicitrate t 99.9 4.5E-25 9.9E-30 235.4 14.9 167 326-494 2-219 (255)
87 cd03235 ABC_Metallic_Cations A 99.9 3.2E-25 7E-30 230.0 13.3 159 329-489 2-208 (213)
88 PRK11000 maltose/maltodextrin 99.9 3.8E-25 8.1E-30 248.0 14.7 168 326-494 3-215 (369)
89 cd03263 ABC_subfamily_A The AB 99.9 4.1E-25 9E-30 230.3 14.0 165 327-494 1-213 (220)
90 PRK13644 cbiO cobalt transport 99.9 4.7E-25 1E-29 237.9 14.8 167 326-494 1-216 (274)
91 COG3839 MalK ABC-type sugar tr 99.9 3.4E-25 7.3E-30 241.4 13.6 183 326-525 3-238 (338)
92 TIGR03265 PhnT2 putative 2-ami 99.9 4.4E-25 9.6E-30 245.8 14.7 168 326-494 4-216 (353)
93 PRK11614 livF leucine/isoleuci 99.9 3.9E-25 8.5E-30 233.2 13.6 168 325-494 4-218 (237)
94 PRK13548 hmuV hemin importer A 99.9 6.3E-25 1.4E-29 234.8 15.2 168 326-494 2-222 (258)
95 COG1137 YhbG ABC-type (unclass 99.9 1.4E-25 3E-30 222.8 9.1 168 325-494 3-220 (243)
96 TIGR01188 drrA daunorubicin re 99.9 3.6E-25 7.7E-30 242.1 13.3 158 335-494 2-205 (302)
97 cd03257 ABC_NikE_OppD_transpor 99.9 7E-25 1.5E-29 229.5 14.9 166 326-492 1-225 (228)
98 COG1135 AbcC ABC-type metal io 99.9 5E-25 1.1E-29 232.3 13.7 166 326-494 1-223 (339)
99 PRK11432 fbpC ferric transport 99.9 5.7E-25 1.2E-29 244.6 15.0 169 325-494 5-218 (351)
100 cd03216 ABC_Carb_Monos_I This 99.9 2E-25 4.4E-30 222.4 10.2 150 327-493 1-162 (163)
101 COG0411 LivG ABC-type branched 99.9 5.7E-25 1.2E-29 225.8 13.4 160 325-494 3-231 (250)
102 TIGR03740 galliderm_ABC gallid 99.9 5.6E-25 1.2E-29 229.9 13.8 166 327-494 1-205 (223)
103 PRK11300 livG leucine/isoleuci 99.9 1.4E-24 2.9E-29 231.5 16.9 168 325-494 4-235 (255)
104 cd03256 ABC_PhnC_transporter A 99.9 8E-25 1.7E-29 231.1 14.8 166 327-494 1-226 (241)
105 COG3842 PotA ABC-type spermidi 99.9 5.5E-25 1.2E-29 240.9 13.8 160 325-493 4-217 (352)
106 TIGR03411 urea_trans_UrtD urea 99.9 1E-24 2.2E-29 230.7 15.4 166 326-494 2-223 (242)
107 COG1124 DppF ABC-type dipeptid 99.9 7.7E-25 1.7E-29 224.7 13.9 169 325-494 2-223 (252)
108 PRK10575 iron-hydroxamate tran 99.9 1E-24 2.2E-29 234.2 15.4 169 324-494 9-229 (265)
109 PRK13641 cbiO cobalt transport 99.9 8.4E-25 1.8E-29 237.5 14.9 167 326-494 2-226 (287)
110 PRK14250 phosphate ABC transpo 99.9 1.1E-24 2.3E-29 230.7 15.3 167 326-494 3-213 (241)
111 PRK13650 cbiO cobalt transport 99.9 9.9E-25 2.1E-29 236.0 15.3 167 326-494 4-221 (279)
112 PRK13643 cbiO cobalt transport 99.9 8.9E-25 1.9E-29 237.4 14.9 167 326-494 1-225 (288)
113 PRK13651 cobalt transporter AT 99.9 9.6E-25 2.1E-29 238.8 15.2 167 326-494 2-246 (305)
114 PRK13635 cbiO cobalt transport 99.9 1.1E-24 2.3E-29 235.8 15.4 168 325-494 4-221 (279)
115 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 4.6E-25 1E-29 231.1 12.2 163 327-493 23-222 (224)
116 PRK13543 cytochrome c biogenes 99.9 1.1E-24 2.3E-29 226.7 14.6 163 323-487 8-211 (214)
117 PRK09544 znuC high-affinity zi 99.9 9.8E-25 2.1E-29 232.5 14.6 166 325-492 3-199 (251)
118 cd03264 ABC_drug_resistance_li 99.9 8.3E-25 1.8E-29 226.7 13.7 163 327-493 1-209 (211)
119 TIGR03410 urea_trans_UrtE urea 99.9 8.2E-25 1.8E-29 229.7 13.8 166 327-494 1-213 (230)
120 PRK13637 cbiO cobalt transport 99.9 1.1E-24 2.4E-29 236.5 15.3 166 327-494 3-226 (287)
121 cd03295 ABC_OpuCA_Osmoprotecti 99.9 9.8E-25 2.1E-29 231.0 14.4 166 327-494 1-217 (242)
122 PRK11124 artP arginine transpo 99.9 1.4E-24 3E-29 229.8 15.2 167 326-494 2-222 (242)
123 TIGR03258 PhnT 2-aminoethylpho 99.9 1E-24 2.2E-29 243.4 14.9 168 325-494 4-220 (362)
124 PRK10253 iron-enterobactin tra 99.9 1.3E-24 2.9E-29 233.2 15.1 168 325-494 6-225 (265)
125 PRK09452 potA putrescine/sperm 99.9 1.1E-24 2.4E-29 244.1 14.8 169 325-494 13-226 (375)
126 PRK13538 cytochrome c biogenes 99.9 1.3E-24 2.7E-29 224.4 14.1 151 326-478 1-193 (204)
127 COG1117 PstB ABC-type phosphat 99.9 1.8E-24 3.9E-29 217.0 14.5 165 325-493 6-228 (253)
128 cd03297 ABC_ModC_molybdenum_tr 99.9 1.4E-24 3E-29 225.6 14.3 164 327-493 2-212 (214)
129 cd03260 ABC_PstB_phosphate_tra 99.9 1.3E-24 2.9E-29 227.6 14.2 165 327-494 1-221 (227)
130 PRK10247 putative ABC transpor 99.9 1.7E-24 3.7E-29 226.8 14.9 163 324-487 5-211 (225)
131 PRK10619 histidine/lysine/argi 99.9 1.9E-24 4.2E-29 230.9 15.6 168 325-494 4-233 (257)
132 TIGR01277 thiQ thiamine ABC tr 99.9 1.5E-24 3.2E-29 225.3 14.3 166 328-494 2-210 (213)
133 PRK13640 cbiO cobalt transport 99.9 1.6E-24 3.5E-29 234.6 15.1 169 324-494 3-224 (282)
134 PRK10851 sulfate/thiosulfate t 99.9 1.6E-24 3.5E-29 241.3 15.3 168 326-494 2-218 (353)
135 PRK13652 cbiO cobalt transport 99.9 1.7E-24 3.8E-29 233.9 15.0 167 326-494 3-219 (277)
136 PRK11144 modC molybdate transp 99.9 1.5E-24 3.2E-29 241.9 14.8 167 326-494 1-210 (352)
137 PRK13634 cbiO cobalt transport 99.9 1.8E-24 3.9E-29 235.2 15.1 166 327-494 3-227 (290)
138 COG0488 Uup ATPase components 99.9 6.4E-24 1.4E-28 245.6 20.4 166 325-497 2-234 (530)
139 PRK13639 cbiO cobalt transport 99.9 2E-24 4.4E-29 233.1 15.3 167 326-494 1-218 (275)
140 PRK15112 antimicrobial peptide 99.9 1.7E-24 3.6E-29 232.7 14.4 169 325-494 3-231 (267)
141 TIGR03608 L_ocin_972_ABC putat 99.9 1.4E-24 3.1E-29 223.8 13.3 154 329-484 1-204 (206)
142 TIGR03873 F420-0_ABC_ATP propo 99.9 2E-24 4.4E-29 230.6 14.8 166 327-494 2-218 (256)
143 PRK09984 phosphonate/organopho 99.9 4E-24 8.6E-29 229.1 16.7 169 325-494 3-234 (262)
144 TIGR00972 3a0107s01c2 phosphat 99.9 2.3E-24 5E-29 228.9 14.7 166 326-494 1-224 (247)
145 PRK11607 potG putrescine trans 99.9 2.1E-24 4.4E-29 242.2 15.0 170 324-494 17-231 (377)
146 PRK13631 cbiO cobalt transport 99.9 3.6E-24 7.8E-29 235.7 16.6 170 323-494 18-257 (320)
147 PRK13636 cbiO cobalt transport 99.9 2.5E-24 5.5E-29 233.3 15.1 168 325-494 4-223 (283)
148 cd03245 ABCC_bacteriocin_expor 99.9 2.4E-24 5.2E-29 224.5 14.1 163 327-492 3-217 (220)
149 PRK13633 cobalt transporter AT 99.9 2.7E-24 5.9E-29 232.7 15.0 168 325-494 3-225 (280)
150 TIGR01978 sufC FeS assembly AT 99.9 2.7E-24 5.9E-29 227.3 14.6 166 327-494 1-226 (243)
151 cd03294 ABC_Pro_Gly_Bertaine T 99.9 1.5E-24 3.3E-29 233.3 12.6 165 328-493 26-241 (269)
152 TIGR02769 nickel_nikE nickel i 99.9 3.6E-24 7.7E-29 229.9 15.3 168 326-494 2-232 (265)
153 PRK13648 cbiO cobalt transport 99.9 3.4E-24 7.4E-29 230.6 15.2 168 325-494 6-223 (269)
154 PRK13539 cytochrome c biogenes 99.9 3E-24 6.4E-29 222.2 14.2 159 326-487 2-199 (207)
155 TIGR02323 CP_lyasePhnK phospho 99.9 4E-24 8.6E-29 227.8 15.4 169 325-494 2-230 (253)
156 PRK13632 cbiO cobalt transport 99.9 3.1E-24 6.7E-29 231.1 14.7 168 325-494 6-223 (271)
157 PRK10938 putative molybdenum t 99.9 2.6E-24 5.7E-29 250.4 15.2 167 326-494 3-216 (490)
158 PRK15439 autoinducer 2 ABC tra 99.9 2.6E-24 5.7E-29 251.4 15.2 167 325-493 10-220 (510)
159 PRK13547 hmuV hemin importer A 99.9 3.4E-24 7.5E-29 230.9 14.9 168 326-494 1-236 (272)
160 PRK13645 cbiO cobalt transport 99.9 3.6E-24 7.7E-29 232.8 15.1 169 325-494 5-232 (289)
161 PRK13649 cbiO cobalt transport 99.9 3.5E-24 7.6E-29 231.7 14.8 166 327-494 3-226 (280)
162 TIGR03005 ectoine_ehuA ectoine 99.9 3.9E-24 8.4E-29 227.8 14.7 167 327-494 1-228 (252)
163 cd03231 ABC_CcmA_heme_exporter 99.9 4.1E-24 8.8E-29 220.2 14.2 157 327-485 1-197 (201)
164 cd03300 ABC_PotA_N PotA is an 99.9 4.8E-24 1E-28 224.4 14.8 166 327-494 1-212 (232)
165 PRK10762 D-ribose transporter 99.9 3.8E-24 8.2E-29 249.7 15.4 167 325-493 3-221 (501)
166 COG1118 CysA ABC-type sulfate/ 99.9 2.4E-24 5.3E-29 226.5 12.2 166 326-493 2-218 (345)
167 PRK13540 cytochrome c biogenes 99.9 4.3E-24 9.3E-29 219.8 13.9 155 326-483 1-196 (200)
168 PRK15056 manganese/iron transp 99.9 5.3E-24 1.2E-28 229.4 15.1 166 326-494 6-222 (272)
169 PRK11701 phnK phosphonate C-P 99.9 7.1E-24 1.5E-28 226.6 15.8 169 325-494 5-233 (258)
170 PRK10070 glycine betaine trans 99.9 4.6E-24 1E-28 240.4 15.1 151 342-493 46-245 (400)
171 cd03230 ABC_DR_subfamily_A Thi 99.9 7.2E-24 1.6E-28 213.2 14.8 152 328-490 2-172 (173)
172 PRK13646 cbiO cobalt transport 99.9 6E-24 1.3E-28 230.7 15.3 166 327-494 3-227 (286)
173 cd03246 ABCC_Protease_Secretio 99.9 6.2E-24 1.3E-28 213.7 14.3 152 327-490 1-172 (173)
174 TIGR02982 heterocyst_DevA ABC 99.9 5.4E-24 1.2E-28 222.2 14.2 164 327-491 2-219 (220)
175 cd03248 ABCC_TAP TAP, the Tran 99.9 6.3E-24 1.4E-28 222.4 14.7 164 324-490 9-225 (226)
176 cd03267 ABC_NatA_like Similar 99.9 4E-24 8.6E-29 225.7 13.3 159 334-493 29-234 (236)
177 cd03229 ABC_Class3 This class 99.9 4.4E-24 9.4E-29 215.8 12.9 153 327-489 1-177 (178)
178 TIGR00968 3a0106s01 sulfate AB 99.9 5.7E-24 1.2E-28 224.6 14.2 166 327-494 1-212 (237)
179 PRK09580 sufC cysteine desulfu 99.9 6.8E-24 1.5E-28 225.1 14.8 166 326-494 1-227 (248)
180 PRK10636 putative ABC transpor 99.9 4.6E-24 9.9E-29 255.1 15.0 164 326-494 1-227 (638)
181 PRK14273 phosphate ABC transpo 99.9 7.6E-24 1.6E-28 225.8 15.0 168 324-494 5-230 (254)
182 PRK13549 xylose transporter AT 99.9 6.1E-24 1.3E-28 248.3 15.4 168 325-494 4-224 (506)
183 PRK10419 nikE nickel transport 99.9 8.3E-24 1.8E-28 227.5 15.2 168 326-494 3-233 (268)
184 PRK14248 phosphate ABC transpo 99.9 8.6E-24 1.9E-28 227.3 15.0 169 323-494 18-244 (268)
185 PRK09700 D-allose transporter 99.9 7.7E-24 1.7E-28 247.6 15.7 168 325-494 4-226 (510)
186 cd03254 ABCC_Glucan_exporter_l 99.9 1.1E-23 2.4E-28 220.8 15.2 166 326-494 2-218 (229)
187 PRK14268 phosphate ABC transpo 99.9 9.5E-24 2.1E-28 225.7 14.9 167 325-494 11-234 (258)
188 cd03215 ABC_Carb_Monos_II This 99.9 1.5E-23 3.3E-28 212.6 15.6 144 324-491 2-182 (182)
189 PRK14242 phosphate transporter 99.9 9.7E-24 2.1E-28 224.8 14.8 167 325-494 5-229 (253)
190 PRK10418 nikD nickel transport 99.9 1.2E-23 2.5E-28 224.5 15.3 168 326-494 4-222 (254)
191 PRK13545 tagH teichoic acids e 99.9 8.1E-24 1.8E-28 241.7 15.0 167 324-494 19-224 (549)
192 PRK13541 cytochrome c biogenes 99.9 7.7E-24 1.7E-28 217.0 13.3 155 326-482 1-191 (195)
193 PRK14247 phosphate ABC transpo 99.9 1.1E-23 2.4E-28 224.0 14.9 166 326-494 3-226 (250)
194 TIGR02142 modC_ABC molybdenum 99.9 7.3E-24 1.6E-28 236.6 14.0 163 331-494 4-213 (354)
195 cd03251 ABCC_MsbA MsbA is an e 99.9 1E-23 2.3E-28 221.8 14.4 164 327-493 1-216 (234)
196 PRK13642 cbiO cobalt transport 99.9 1.2E-23 2.6E-28 227.4 15.1 167 326-494 4-221 (277)
197 cd03252 ABCC_Hemolysin The ABC 99.9 1E-23 2.2E-28 222.5 13.9 165 327-494 1-217 (237)
198 PRK10744 pstB phosphate transp 99.9 1.6E-23 3.4E-28 224.3 15.3 168 324-494 11-236 (260)
199 TIGR01189 ccmA heme ABC export 99.9 1E-23 2.2E-28 216.5 13.2 147 327-475 1-188 (198)
200 PRK11022 dppD dipeptide transp 99.9 1.9E-23 4.2E-28 230.6 16.2 167 326-494 3-235 (326)
201 PRK14274 phosphate ABC transpo 99.9 1.5E-23 3.3E-28 224.2 14.8 169 323-494 9-235 (259)
202 PRK14245 phosphate ABC transpo 99.9 3.2E-23 7E-28 220.5 17.2 167 325-494 2-226 (250)
203 PRK14235 phosphate transporter 99.9 1.7E-23 3.6E-28 225.0 15.0 169 323-494 16-243 (267)
204 PRK11288 araG L-arabinose tran 99.9 1.3E-23 2.8E-28 245.2 15.3 167 325-493 3-220 (501)
205 CHL00131 ycf16 sulfate ABC tra 99.9 2.3E-23 4.9E-28 221.8 15.8 169 324-494 5-233 (252)
206 PRK11308 dppF dipeptide transp 99.9 1.6E-23 3.5E-28 231.2 15.2 169 325-494 4-236 (327)
207 PRK15079 oligopeptide ABC tran 99.9 1.5E-23 3.3E-28 231.7 14.9 169 324-494 6-243 (331)
208 cd03217 ABC_FeS_Assembly ABC-t 99.9 7.8E-24 1.7E-28 217.9 11.5 158 327-494 1-186 (200)
209 cd03247 ABCC_cytochrome_bd The 99.9 2.2E-23 4.7E-28 210.6 14.5 156 327-493 1-176 (178)
210 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.7E-23 3.8E-28 220.7 14.4 165 327-494 1-218 (238)
211 cd03228 ABCC_MRP_Like The MRP 99.9 2.3E-23 4.9E-28 209.2 14.5 150 327-489 1-170 (171)
212 PRK14275 phosphate ABC transpo 99.9 3.7E-23 7.9E-28 224.5 17.1 169 323-494 36-262 (286)
213 PRK14240 phosphate transporter 99.9 3.8E-23 8.3E-28 219.8 16.8 167 325-494 2-226 (250)
214 cd03299 ABC_ModC_like Archeal 99.9 1.9E-23 4.1E-28 220.4 14.2 167 327-494 1-211 (235)
215 PRK14267 phosphate ABC transpo 99.9 2.1E-23 4.6E-28 222.2 14.7 167 325-494 3-229 (253)
216 TIGR02324 CP_lyasePhnL phospho 99.9 2.8E-23 6E-28 217.2 15.0 159 326-486 1-222 (224)
217 PRK14269 phosphate ABC transpo 99.9 2.3E-23 5E-28 221.2 14.5 166 326-494 2-222 (246)
218 PRK14256 phosphate ABC transpo 99.9 5.2E-23 1.1E-27 219.2 17.2 167 325-494 3-228 (252)
219 PLN03073 ABC transporter F fam 99.9 1.2E-22 2.6E-27 244.4 22.4 163 324-492 506-703 (718)
220 COG4604 CeuD ABC-type enteroch 99.9 4.2E-24 9.1E-29 211.6 8.0 167 326-494 1-217 (252)
221 cd03250 ABCC_MRP_domain1 Domai 99.9 2.2E-23 4.7E-28 215.0 13.7 161 327-489 1-203 (204)
222 PRK14270 phosphate ABC transpo 99.9 3.2E-23 6.9E-28 220.6 15.2 167 325-494 3-227 (251)
223 cd03213 ABCG_EPDR ABCG transpo 99.9 4.1E-23 8.8E-28 211.7 15.4 158 326-493 3-192 (194)
224 cd03244 ABCC_MRP_domain2 Domai 99.9 2.6E-23 5.7E-28 216.8 14.3 166 326-494 2-218 (221)
225 PRK14271 phosphate ABC transpo 99.9 3.9E-23 8.4E-28 223.2 16.0 176 316-494 11-243 (276)
226 TIGR01186 proV glycine betaine 99.9 1.5E-23 3.3E-28 233.5 13.1 158 335-493 2-210 (363)
227 PRK14255 phosphate ABC transpo 99.9 5.7E-23 1.2E-27 218.8 16.8 168 324-494 3-228 (252)
228 cd03223 ABCD_peroxisomal_ALDP 99.9 4.3E-23 9.3E-28 206.3 14.8 150 327-490 1-164 (166)
229 cd03253 ABCC_ATM1_transporter 99.9 2.7E-23 5.9E-28 218.9 14.1 165 327-494 1-216 (236)
230 COG4586 ABC-type uncharacteriz 99.9 1.7E-23 3.6E-28 216.7 12.1 145 342-495 42-239 (325)
231 cd03288 ABCC_SUR2 The SUR doma 99.9 4.3E-23 9.3E-28 220.6 15.7 177 312-494 8-235 (257)
232 cd03232 ABC_PDR_domain2 The pl 99.9 5.4E-23 1.2E-27 210.3 15.7 158 326-493 3-190 (192)
233 PRK14239 phosphate transporter 99.9 3.9E-23 8.5E-28 219.9 15.2 167 325-494 4-228 (252)
234 PRK14241 phosphate transporter 99.9 3.3E-23 7.2E-28 221.5 14.7 166 326-494 4-234 (258)
235 PRK15064 ABC transporter ATP-b 99.9 2.3E-23 5.1E-28 244.7 14.8 161 326-492 1-231 (530)
236 PRK14237 phosphate transporter 99.9 3.8E-23 8.2E-28 222.2 15.1 168 324-494 18-243 (267)
237 TIGR03269 met_CoM_red_A2 methy 99.9 2.2E-23 4.8E-28 244.3 14.4 166 327-493 1-249 (520)
238 PRK14262 phosphate ABC transpo 99.9 3.7E-23 8.1E-28 219.9 14.9 166 326-494 3-226 (250)
239 COG4559 ABC-type hemin transpo 99.9 2.6E-23 5.7E-28 208.3 12.8 167 326-494 1-222 (259)
240 PRK15093 antimicrobial peptide 99.9 6.5E-23 1.4E-27 226.9 17.0 167 326-494 3-240 (330)
241 PRK14272 phosphate ABC transpo 99.9 4.5E-23 9.7E-28 219.5 15.1 166 326-494 4-228 (252)
242 PRK15064 ABC transporter ATP-b 99.9 2.5E-23 5.5E-28 244.4 14.3 164 324-492 317-514 (530)
243 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 2E-23 4.3E-28 203.9 11.3 140 327-490 1-144 (144)
244 PRK14251 phosphate ABC transpo 99.9 3.9E-23 8.4E-28 219.9 14.4 166 326-494 4-227 (251)
245 PRK14249 phosphate ABC transpo 99.9 5E-23 1.1E-27 219.1 15.2 167 325-494 3-227 (251)
246 PRK14265 phosphate ABC transpo 99.9 6.4E-23 1.4E-27 221.3 16.1 164 321-487 15-234 (274)
247 TIGR01184 ntrCD nitrate transp 99.9 2.8E-23 6E-28 218.4 12.9 152 342-494 3-196 (230)
248 PRK11147 ABC transporter ATPas 99.9 2.7E-23 5.9E-28 248.7 14.4 162 326-494 3-234 (635)
249 PRK14259 phosphate ABC transpo 99.9 4.9E-23 1.1E-27 221.6 14.9 164 323-489 10-229 (269)
250 PRK14254 phosphate ABC transpo 99.9 5.5E-23 1.2E-27 223.1 15.0 169 323-494 36-261 (285)
251 cd03234 ABCG_White The White s 99.9 4.3E-23 9.4E-28 216.2 13.7 166 326-493 3-224 (226)
252 PRK14238 phosphate transporter 99.9 4.9E-23 1.1E-27 221.8 14.3 170 322-494 20-247 (271)
253 PRK10982 galactose/methyl gala 99.9 3.4E-23 7.4E-28 241.1 14.0 163 329-493 1-214 (491)
254 PRK14246 phosphate ABC transpo 99.9 7.7E-23 1.7E-27 218.7 15.5 168 324-494 8-233 (257)
255 COG1119 ModF ABC-type molybden 99.9 6.5E-23 1.4E-27 210.7 14.2 161 324-494 29-254 (257)
256 TIGR02633 xylG D-xylose ABC tr 99.9 4E-23 8.7E-28 241.1 14.4 168 325-494 256-484 (500)
257 PRK13546 teichoic acids export 99.9 6.1E-23 1.3E-27 220.2 14.7 150 342-493 42-223 (264)
258 PRK13549 xylose transporter AT 99.9 3.9E-23 8.5E-28 241.4 14.3 168 325-494 258-486 (506)
259 PRK10938 putative molybdenum t 99.9 5.7E-23 1.2E-27 239.2 15.5 170 324-495 258-485 (490)
260 TIGR02633 xylG D-xylose ABC tr 99.9 4.8E-23 1E-27 240.4 14.9 166 326-493 1-221 (500)
261 cd03222 ABC_RNaseL_inhibitor T 99.9 2.1E-23 4.5E-28 210.5 10.2 144 330-491 4-150 (177)
262 PRK14253 phosphate ABC transpo 99.9 7.1E-23 1.5E-27 217.7 14.6 166 326-494 3-225 (249)
263 PRK14258 phosphate ABC transpo 99.9 9.9E-23 2.2E-27 218.3 15.8 169 325-494 6-237 (261)
264 cd03369 ABCC_NFT1 Domain 2 of 99.9 1.1E-22 2.5E-27 210.1 15.6 163 324-493 4-203 (207)
265 PRK15134 microcin C ABC transp 99.9 5.4E-23 1.2E-27 241.5 14.3 168 325-494 4-238 (529)
266 PRK09473 oppD oligopeptide tra 99.9 1E-22 2.2E-27 225.2 15.4 169 324-494 10-243 (330)
267 cd03238 ABC_UvrA The excision 99.9 9.8E-23 2.1E-27 205.4 13.8 146 342-493 13-168 (176)
268 PRK13409 putative ATPase RIL; 99.9 6.4E-23 1.4E-27 242.5 14.6 163 325-488 339-529 (590)
269 TIGR03269 met_CoM_red_A2 methy 99.9 8.4E-23 1.8E-27 239.4 15.4 169 325-494 278-509 (520)
270 PRK09700 D-allose transporter 99.9 9.8E-23 2.1E-27 238.4 15.7 166 325-493 264-489 (510)
271 cd03233 ABC_PDR_domain1 The pl 99.9 1.8E-22 3.9E-27 208.2 15.9 164 326-493 3-200 (202)
272 PRK14261 phosphate ABC transpo 99.9 1.9E-22 4E-27 215.0 16.5 167 325-494 5-229 (253)
273 PRK14236 phosphate transporter 99.9 1.2E-22 2.6E-27 218.9 15.1 168 324-494 23-248 (272)
274 PRK11819 putative ABC transpor 99.9 1.1E-22 2.3E-27 240.3 16.0 161 325-492 5-239 (556)
275 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 8.7E-23 1.9E-27 240.9 14.6 164 324-492 320-520 (552)
276 PRK15134 microcin C ABC transp 99.9 8.6E-23 1.9E-27 239.8 14.4 168 325-494 274-507 (529)
277 PRK14243 phosphate transporter 99.9 1.6E-22 3.4E-27 217.1 15.2 161 324-487 8-224 (264)
278 PRK10261 glutathione transport 99.9 1.1E-22 2.3E-27 243.0 15.3 169 324-494 311-545 (623)
279 PRK14244 phosphate ABC transpo 99.9 1.4E-22 2.9E-27 215.8 14.4 164 328-494 7-229 (251)
280 COG0410 LivF ABC-type branched 99.9 1.5E-22 3.2E-27 206.6 13.7 168 325-494 2-218 (237)
281 PRK03695 vitamin B12-transport 99.9 9.3E-23 2E-27 216.9 12.7 162 328-494 2-214 (248)
282 TIGR01166 cbiO cobalt transpor 99.9 8.4E-23 1.8E-27 208.3 11.9 133 342-476 10-189 (190)
283 cd03290 ABCC_SUR1_N The SUR do 99.9 1.4E-22 3.1E-27 211.1 13.6 162 328-490 2-218 (218)
284 PRK11819 putative ABC transpor 99.9 1.3E-22 2.8E-27 239.6 14.8 164 324-492 322-522 (556)
285 TIGR03415 ABC_choXWV_ATP choli 99.9 9E-23 2E-27 228.5 12.6 163 331-494 29-246 (382)
286 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 2E-22 4.4E-27 237.8 15.9 163 325-493 3-238 (552)
287 PRK14260 phosphate ABC transpo 99.9 2.5E-22 5.4E-27 214.9 14.9 167 325-494 6-235 (259)
288 cd03289 ABCC_CFTR2 The CFTR su 99.9 3.7E-22 8.1E-27 215.2 16.3 165 326-494 2-217 (275)
289 PRK14264 phosphate ABC transpo 99.9 3.9E-22 8.4E-27 218.5 16.7 169 323-494 42-281 (305)
290 PRK10261 glutathione transport 99.9 1.6E-22 3.5E-27 241.5 14.8 168 324-493 10-249 (623)
291 PRK14252 phosphate ABC transpo 99.9 4.8E-22 1E-26 213.4 16.9 168 324-494 14-241 (265)
292 cd00267 ABC_ATPase ABC (ATP-bi 99.9 2.5E-22 5.3E-27 198.6 12.9 144 329-489 2-156 (157)
293 PRK14266 phosphate ABC transpo 99.9 6E-22 1.3E-26 210.7 16.8 166 326-494 3-226 (250)
294 COG4525 TauB ABC-type taurine 99.9 2.4E-22 5.2E-27 198.8 12.2 154 326-488 3-208 (259)
295 PRK10982 galactose/methyl gala 99.9 2.2E-22 4.8E-27 234.3 14.1 166 325-493 249-471 (491)
296 KOG0927 Predicted transporter 99.9 5.3E-22 1.1E-26 221.3 15.7 162 323-497 386-590 (614)
297 cd03237 ABC_RNaseL_inhibitor_d 99.9 2.8E-22 6E-27 213.0 13.0 143 345-488 20-191 (246)
298 TIGR02770 nickel_nikD nickel i 99.9 3.1E-22 6.7E-27 210.4 12.9 152 342-494 4-207 (230)
299 PRK15439 autoinducer 2 ABC tra 99.9 3.3E-22 7.2E-27 233.8 13.8 164 324-493 266-483 (510)
300 TIGR01257 rim_protein retinal- 99.9 3.7E-22 8E-27 256.8 15.0 169 324-494 1935-2151(2272)
301 COG1129 MglA ABC-type sugar tr 99.9 8.9E-22 1.9E-26 222.9 16.3 159 325-493 7-225 (500)
302 cd03291 ABCC_CFTR1 The CFTR su 99.9 1E-21 2.2E-26 212.6 16.0 168 323-494 36-239 (282)
303 PRK11288 araG L-arabinose tran 99.9 6.4E-22 1.4E-26 231.0 15.1 164 326-494 257-477 (501)
304 cd03236 ABC_RNaseL_inhibitor_d 99.9 7.3E-22 1.6E-26 210.8 13.5 155 330-488 4-214 (255)
305 PRK14257 phosphate ABC transpo 99.9 1.9E-21 4.2E-26 214.8 17.2 168 324-494 78-305 (329)
306 PLN03073 ABC transporter F fam 99.9 9.3E-22 2E-26 236.7 15.7 165 325-494 176-422 (718)
307 cd03227 ABC_Class2 ABC-type Cl 99.9 4.9E-22 1.1E-26 197.9 11.0 128 341-487 12-154 (162)
308 COG4598 HisP ABC-type histidin 99.9 5.7E-22 1.2E-26 193.6 10.6 167 326-494 6-233 (256)
309 PRK10762 D-ribose transporter 99.9 8.3E-22 1.8E-26 230.0 14.2 164 325-494 256-476 (501)
310 PRK14263 phosphate ABC transpo 99.9 1.6E-21 3.4E-26 209.1 15.0 166 325-493 7-236 (261)
311 COG4181 Predicted ABC-type tra 99.9 1.2E-21 2.6E-26 190.2 12.4 167 326-493 6-226 (228)
312 PRK15177 Vi polysaccharide exp 99.9 1.5E-21 3.3E-26 203.0 12.5 148 342-494 5-184 (213)
313 COG1123 ATPase components of v 99.9 2.4E-21 5.2E-26 220.7 15.1 169 325-494 4-236 (539)
314 TIGR01257 rim_protein retinal- 99.9 1.5E-21 3.3E-26 251.2 15.1 168 324-494 926-1141(2272)
315 COG0396 sufC Cysteine desulfur 99.9 4.2E-21 9E-26 195.3 14.9 168 325-494 2-226 (251)
316 COG0444 DppD ABC-type dipeptid 99.9 3.3E-21 7.3E-26 206.0 14.0 165 327-493 2-234 (316)
317 PRK10522 multidrug transporter 99.9 3.4E-21 7.5E-26 227.2 15.6 168 325-494 321-530 (547)
318 COG2274 SunT ABC-type bacterio 99.9 2.4E-21 5.3E-26 231.0 14.3 160 324-494 469-688 (709)
319 TIGR03771 anch_rpt_ABC anchore 99.9 2.5E-21 5.5E-26 202.6 12.8 147 345-494 1-193 (223)
320 TIGR01194 cyc_pep_trnsptr cycl 99.9 3.5E-21 7.6E-26 227.4 15.4 160 325-493 336-550 (555)
321 COG4107 PhnK ABC-type phosphon 99.9 5E-21 1.1E-25 186.1 13.3 160 325-493 5-232 (258)
322 COG1123 ATPase components of v 99.9 2.9E-21 6.2E-26 220.1 13.6 171 323-494 277-511 (539)
323 KOG0062 ATPase component of AB 99.9 1.9E-21 4.2E-26 215.7 11.4 164 325-496 79-278 (582)
324 COG4175 ProV ABC-type proline/ 99.8 4.6E-21 1E-25 202.1 13.3 143 342-493 46-245 (386)
325 TIGR01842 type_I_sec_PrtD type 99.8 6.7E-21 1.4E-25 224.6 15.5 167 325-493 315-533 (544)
326 COG3845 ABC-type uncharacteriz 99.8 7.8E-21 1.7E-25 211.3 14.0 157 326-492 4-219 (501)
327 PRK13657 cyclic beta-1,2-gluca 99.8 8.7E-21 1.9E-25 225.7 15.2 166 325-493 333-549 (588)
328 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 7E-21 1.5E-25 230.4 14.4 164 325-494 450-665 (686)
329 PRK11160 cysteine/glutathione 99.8 9.1E-21 2E-25 224.8 15.1 166 325-493 337-553 (574)
330 PRK13409 putative ATPase RIL; 99.8 8.4E-21 1.8E-25 224.5 14.6 153 331-488 78-286 (590)
331 COG1134 TagH ABC-type polysacc 99.8 5.9E-21 1.3E-25 196.6 11.5 144 342-495 45-229 (249)
332 PRK10535 macrolide transporter 99.8 9.5E-21 2.1E-25 227.2 15.1 168 325-494 3-224 (648)
333 COG4133 CcmA ABC-type transpor 99.8 7.8E-21 1.7E-25 187.8 11.8 139 326-474 2-190 (209)
334 COG4619 ABC-type uncharacteriz 99.8 4.1E-21 8.9E-26 186.0 9.5 147 337-492 14-213 (223)
335 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 7.7E-21 1.7E-25 230.9 14.3 164 325-494 476-692 (710)
336 COG4161 ArtP ABC-type arginine 99.8 1E-20 2.3E-25 181.8 11.7 165 327-494 3-222 (242)
337 PRK11176 lipid transporter ATP 99.8 9.1E-21 2E-25 225.2 13.9 165 325-493 340-558 (582)
338 COG4608 AppF ABC-type oligopep 99.8 9.8E-21 2.1E-25 198.5 12.3 159 325-493 3-190 (268)
339 TIGR01192 chvA glucan exporter 99.8 1.3E-20 2.9E-25 223.8 15.1 166 325-493 333-549 (585)
340 COG4987 CydC ABC-type transpor 99.8 1.1E-20 2.5E-25 211.4 13.3 158 326-494 336-553 (573)
341 PRK11174 cysteine/glutathione 99.8 1.5E-20 3.3E-25 223.6 15.2 164 325-493 348-563 (588)
342 COG4674 Uncharacterized ABC-ty 99.8 6.1E-21 1.3E-25 189.0 9.3 158 325-493 4-226 (249)
343 TIGR03375 type_I_sec_LssB type 99.8 1.9E-20 4E-25 227.0 15.3 165 325-493 462-679 (694)
344 PRK10790 putative multidrug tr 99.8 1.8E-20 4E-25 223.1 15.0 165 325-493 339-554 (592)
345 KOG0057 Mitochondrial Fe/S clu 99.8 2.3E-20 4.9E-25 209.1 14.7 167 324-494 349-566 (591)
346 TIGR02203 MsbA_lipidA lipid A 99.8 2E-20 4.3E-25 221.8 14.7 165 325-492 329-546 (571)
347 PLN03211 ABC transporter G-25; 99.8 1.5E-20 3.2E-25 225.0 13.3 165 328-494 70-288 (659)
348 TIGR00954 3a01203 Peroxysomal 99.8 2.5E-20 5.4E-25 223.9 14.9 159 324-487 449-652 (659)
349 PRK10789 putative multidrug tr 99.8 2.7E-20 5.8E-25 220.6 14.8 167 325-494 312-530 (569)
350 TIGR01193 bacteriocin_ABC ABC- 99.8 2.8E-20 6.1E-25 225.9 14.7 166 325-494 472-689 (708)
351 cd03270 ABC_UvrA_I The excisio 99.8 4.7E-20 1E-24 193.6 14.2 150 342-493 13-224 (226)
352 TIGR02204 MsbA_rel ABC transpo 99.8 3E-20 6.6E-25 220.5 14.5 167 325-494 336-555 (576)
353 TIGR01846 type_I_sec_HlyB type 99.8 4.6E-20 1E-24 223.5 15.6 166 325-494 454-672 (694)
354 COG4988 CydD ABC-type transpor 99.8 5.8E-20 1.3E-24 208.7 14.7 166 326-494 320-535 (559)
355 TIGR00958 3a01208 Conjugate Tr 99.8 4.3E-20 9.4E-25 224.0 14.1 165 325-494 477-694 (711)
356 TIGR02857 CydD thiol reductant 99.8 4.8E-20 1E-24 216.6 13.9 158 325-485 319-528 (529)
357 TIGR01187 potA spermidine/putr 99.8 3.4E-20 7.3E-25 204.9 10.6 139 356-494 1-182 (325)
358 KOG0927 Predicted transporter 99.8 8.8E-20 1.9E-24 203.7 13.8 157 327-496 76-302 (614)
359 COG1101 PhnK ABC-type uncharac 99.8 1.2E-19 2.6E-24 182.6 12.2 161 326-495 1-231 (263)
360 COG4148 ModC ABC-type molybdat 99.8 4.4E-20 9.4E-25 191.8 8.9 162 331-494 5-210 (352)
361 TIGR02868 CydC thiol reductant 99.8 2.2E-19 4.8E-24 211.0 13.7 146 325-474 333-529 (529)
362 COG4136 ABC-type uncharacteriz 99.8 4E-19 8.6E-24 169.3 10.6 152 325-478 1-199 (213)
363 COG1132 MdlB ABC-type multidru 99.8 8.8E-19 1.9E-23 207.7 15.2 165 325-494 327-544 (567)
364 TIGR00956 3a01205 Pleiotropic 99.8 6.6E-19 1.4E-23 226.0 15.0 170 323-494 756-985 (1394)
365 PTZ00265 multidrug resistance 99.8 8.2E-19 1.8E-23 225.4 14.1 164 326-490 382-656 (1466)
366 cd03278 ABC_SMC_barmotin Barmo 99.8 1.7E-18 3.6E-23 178.1 12.9 137 342-486 15-188 (197)
367 COG4618 ArpD ABC-type protease 99.8 4.3E-18 9.2E-23 189.3 15.8 162 323-494 331-552 (580)
368 KOG0062 ATPase component of AB 99.8 8.7E-19 1.9E-23 194.8 10.0 156 325-493 361-559 (582)
369 PTZ00265 multidrug resistance 99.8 2.2E-18 4.7E-23 221.6 14.7 166 325-492 1164-1441(1466)
370 KOG0059 Lipid exporter ABCA1 a 99.8 1.6E-18 3.4E-23 214.0 12.4 165 325-493 563-778 (885)
371 KOG0055 Multidrug/pheromone ex 99.8 2.3E-18 5E-23 209.3 13.4 159 323-492 347-566 (1228)
372 KOG0066 eIF2-interacting prote 99.8 1.1E-18 2.3E-23 189.2 9.1 154 325-491 585-779 (807)
373 cd03279 ABC_sbcCD SbcCD and ot 99.8 5.8E-18 1.3E-22 176.1 14.0 161 326-491 5-211 (213)
374 KOG0058 Peptide exporter, ABC 99.8 3.4E-18 7.3E-23 197.9 13.1 160 324-494 463-683 (716)
375 PLN03140 ABC transporter G fam 99.8 5.2E-18 1.1E-22 217.3 15.6 167 326-494 867-1102(1470)
376 TIGR00955 3a01204 The Eye Pigm 99.7 3.6E-18 7.8E-23 204.0 12.5 152 342-495 43-249 (617)
377 TIGR00957 MRP_assoc_pro multi 99.7 6.4E-18 1.4E-22 219.1 15.0 167 325-493 635-841 (1522)
378 PLN03232 ABC transporter C fam 99.7 6.1E-18 1.3E-22 219.0 14.3 165 325-493 1233-1449(1495)
379 COG4778 PhnL ABC-type phosphon 99.7 6.7E-18 1.5E-22 164.0 10.9 152 326-487 4-226 (235)
380 PLN03130 ABC transporter C fam 99.7 6.6E-18 1.4E-22 219.0 14.2 166 324-493 1235-1452(1622)
381 PLN03232 ABC transporter C fam 99.7 1.3E-17 2.8E-22 216.0 15.5 167 325-493 613-819 (1495)
382 cd03271 ABC_UvrA_II The excisi 99.7 2.5E-17 5.4E-22 175.9 15.0 95 399-494 153-258 (261)
383 PTZ00243 ABC transporter; Prov 99.7 1.1E-17 2.4E-22 216.6 14.5 166 324-493 1306-1524(1560)
384 TIGR01271 CFTR_protein cystic 99.7 1.4E-17 2.9E-22 215.5 14.9 164 326-493 428-627 (1490)
385 COG4172 ABC-type uncharacteriz 99.7 3.7E-17 8E-22 177.1 14.6 167 325-493 5-238 (534)
386 PLN03130 ABC transporter C fam 99.7 1.9E-17 4E-22 214.9 14.5 167 325-493 613-819 (1622)
387 PTZ00243 ABC transporter; Prov 99.7 1.4E-17 3.1E-22 215.6 13.2 158 335-494 669-862 (1560)
388 COG4172 ABC-type uncharacteriz 99.7 4.2E-17 9.1E-22 176.7 14.4 170 323-494 273-508 (534)
389 TIGR00957 MRP_assoc_pro multi 99.7 2.4E-17 5.2E-22 213.8 14.5 166 324-493 1282-1499(1522)
390 TIGR01271 CFTR_protein cystic 99.7 4.1E-17 8.8E-22 211.1 16.3 166 324-493 1215-1431(1490)
391 cd03272 ABC_SMC3_euk Eukaryoti 99.7 6.2E-17 1.3E-21 171.3 14.3 77 408-486 152-233 (243)
392 cd03274 ABC_SMC4_euk Eukaryoti 99.7 1.9E-17 4.2E-22 172.1 9.1 150 327-486 6-202 (212)
393 COG4615 PvdE ABC-type sideroph 99.7 4.4E-17 9.6E-22 175.9 11.7 159 326-493 322-528 (546)
394 PRK04946 hypothetical protein; 99.7 1.9E-17 4.2E-22 165.8 7.7 74 762-835 96-173 (181)
395 PLN03140 ABC transporter G fam 99.7 4.8E-17 1E-21 208.5 10.6 151 342-494 183-419 (1470)
396 COG4138 BtuD ABC-type cobalami 99.7 3E-17 6.5E-22 160.1 5.9 165 326-494 3-213 (248)
397 cd03240 ABC_Rad50 The catalyti 99.7 6.3E-17 1.4E-21 167.3 8.2 142 343-488 16-197 (204)
398 TIGR00956 3a01205 Pleiotropic 99.7 1.1E-16 2.4E-21 205.5 12.3 151 342-494 79-292 (1394)
399 cd03275 ABC_SMC1_euk Eukaryoti 99.7 2.6E-16 5.5E-21 167.5 13.0 76 410-486 151-231 (247)
400 COG4167 SapF ABC-type antimicr 99.7 1.6E-16 3.4E-21 156.1 10.2 159 327-494 5-231 (267)
401 cd03273 ABC_SMC2_euk Eukaryoti 99.7 4.4E-16 9.6E-21 166.0 14.6 79 406-486 158-241 (251)
402 KOG0061 Transporter, ABC super 99.7 7.3E-16 1.6E-20 183.1 14.6 151 342-495 48-253 (613)
403 cd03276 ABC_SMC6_euk Eukaryoti 99.6 1.8E-15 3.9E-20 155.7 14.2 143 342-486 14-188 (198)
404 COG1245 Predicted ATPase, RNas 99.6 7.7E-16 1.7E-20 169.1 11.9 153 325-486 341-529 (591)
405 PF00005 ABC_tran: ABC transpo 99.6 3E-16 6.4E-21 151.0 6.4 100 342-442 3-137 (137)
406 KOG0056 Heavy metal exporter H 99.6 1E-15 2.2E-20 168.6 11.0 167 324-494 535-753 (790)
407 KOG0055 Multidrug/pheromone ex 99.6 1.6E-15 3.5E-20 184.8 12.6 166 324-494 985-1205(1228)
408 KOG0066 eIF2-interacting prote 99.6 4.4E-15 9.5E-20 161.5 12.4 163 327-494 265-490 (807)
409 TIGR00630 uvra excinuclease AB 99.6 8.2E-15 1.8E-19 179.5 16.2 95 399-494 812-917 (924)
410 PRK00349 uvrA excinuclease ABC 99.6 1.4E-14 2.9E-19 177.9 16.1 95 399-494 814-919 (943)
411 KOG2355 Predicted ABC-type tra 99.6 1.5E-14 3.2E-19 144.7 10.3 167 323-493 10-228 (291)
412 COG4178 ABC-type uncharacteriz 99.5 4E-14 8.6E-19 164.0 14.1 160 324-486 390-586 (604)
413 PRK00635 excinuclease ABC subu 99.5 4.5E-14 9.7E-19 180.3 15.8 89 398-487 792-885 (1809)
414 cd03239 ABC_SMC_head The struc 99.5 6.3E-14 1.4E-18 141.9 13.1 131 352-487 23-171 (178)
415 COG1245 Predicted ATPase, RNas 99.5 3.9E-14 8.5E-19 155.8 12.0 123 349-481 99-281 (591)
416 PF01713 Smr: Smr domain; Int 99.5 2.9E-14 6.4E-19 126.2 7.0 72 764-835 1-83 (83)
417 cd03277 ABC_SMC5_euk Eukaryoti 99.5 6E-14 1.3E-18 146.1 10.4 82 408-489 120-210 (213)
418 KOG0054 Multidrug resistance-a 99.4 4.2E-13 9.2E-18 167.4 13.4 169 323-493 515-722 (1381)
419 KOG0065 Pleiotropic drug resis 99.4 9.9E-14 2.1E-18 169.4 7.3 151 342-494 809-1013(1391)
420 smart00463 SMR Small MutS-rela 99.4 2.1E-13 4.7E-18 119.8 7.1 74 762-835 2-80 (80)
421 KOG0060 Long-chain acyl-CoA tr 99.4 1.6E-12 3.4E-17 147.2 14.7 159 324-487 431-640 (659)
422 KOG0054 Multidrug resistance-a 99.4 1.2E-12 2.7E-17 163.4 14.7 168 322-492 1134-1352(1381)
423 COG1129 MglA ABC-type sugar tr 99.4 1.4E-12 3E-17 148.6 13.0 163 327-493 264-481 (500)
424 COG2401 ABC-type ATPase fused 99.4 9.9E-13 2.1E-17 143.3 10.7 146 342-489 401-585 (593)
425 PF05192 MutS_III: MutS domain 99.4 1.7E-12 3.8E-17 133.0 11.7 169 1-266 33-204 (204)
426 COG5265 ATM1 ABC-type transpor 99.4 1.7E-12 3.8E-17 142.2 10.2 166 325-494 261-478 (497)
427 cd03241 ABC_RecN RecN ATPase i 99.4 3.8E-12 8.3E-17 137.8 12.6 75 413-489 169-248 (276)
428 KOG0064 Peroxisomal long-chain 99.3 1.7E-10 3.6E-15 129.3 23.5 155 327-486 482-681 (728)
429 PRK00635 excinuclease ABC subu 99.3 3.4E-11 7.3E-16 154.4 15.0 89 399-488 1683-1776(1809)
430 COG0178 UvrA Excinuclease ATPa 99.2 5E-11 1.1E-15 139.5 14.3 87 399-486 806-897 (935)
431 COG2840 Uncharacterized protei 99.2 3.9E-11 8.4E-16 120.0 6.7 72 762-833 97-175 (184)
432 COG4170 SapD ABC-type antimicr 99.2 7E-11 1.5E-15 118.8 8.0 146 342-489 25-235 (330)
433 PF02463 SMC_N: RecF/RecN/SMC 99.1 2.6E-10 5.5E-15 119.0 12.3 71 414-486 136-211 (220)
434 cd03242 ABC_RecF RecF is a rec 99.1 1.6E-10 3.5E-15 124.7 9.0 76 411-491 180-269 (270)
435 TIGR00630 uvra excinuclease AB 99.0 4.8E-10 1E-14 138.0 10.2 95 399-494 471-575 (924)
436 COG3845 ABC-type uncharacteriz 99.0 1.9E-09 4.1E-14 121.2 12.8 169 322-492 253-482 (501)
437 PRK00349 uvrA excinuclease ABC 99.0 7.5E-10 1.6E-14 136.6 9.7 95 399-494 473-577 (943)
438 KOG0063 RNAse L inhibitor, ABC 99.0 6.8E-10 1.5E-14 121.9 7.8 136 342-486 354-530 (592)
439 COG3910 Predicted ATPase [Gene 98.9 4.9E-09 1.1E-13 104.4 10.7 69 409-478 124-192 (233)
440 PRK13695 putative NTPase; Prov 98.9 2.2E-09 4.8E-14 108.1 7.2 133 353-491 2-153 (174)
441 TIGR02858 spore_III_AA stage I 98.9 5.3E-09 1.1E-13 112.6 10.2 113 352-480 112-235 (270)
442 cd01124 KaiC KaiC is a circadi 98.8 2.2E-08 4.8E-13 101.2 8.7 119 354-475 2-141 (187)
443 PRK08533 flagellar accessory p 98.7 5.9E-08 1.3E-12 102.4 11.8 132 328-472 9-161 (230)
444 PF13304 AAA_21: AAA domain; P 98.7 2.6E-08 5.6E-13 103.1 8.0 65 411-476 233-301 (303)
445 TIGR00634 recN DNA repair prot 98.6 1.5E-07 3.2E-12 111.9 11.2 115 413-535 439-561 (563)
446 cd01120 RecA-like_NTPases RecA 98.6 3.1E-07 6.7E-12 89.6 10.7 121 353-475 1-138 (165)
447 KOG0063 RNAse L inhibitor, ABC 98.6 9.4E-08 2E-12 105.4 7.4 122 349-480 99-279 (592)
448 TIGR00618 sbcc exonuclease Sbc 98.5 1.5E-07 3.4E-12 119.5 8.7 82 405-487 941-1034(1042)
449 PRK07721 fliI flagellum-specif 98.5 4.9E-07 1.1E-11 103.6 11.3 141 342-495 151-336 (438)
450 PRK10869 recombination and rep 98.5 4.3E-07 9.3E-12 107.5 11.2 114 414-535 430-551 (553)
451 KOG0065 Pleiotropic drug resis 98.5 3.2E-07 7E-12 113.5 8.9 151 342-494 133-343 (1391)
452 PHA02562 46 endonuclease subun 98.4 3.1E-07 6.6E-12 109.2 7.9 88 395-488 452-551 (562)
453 PRK06067 flagellar accessory p 98.4 1.6E-06 3.4E-11 91.6 12.4 125 347-475 22-166 (234)
454 PRK01156 chromosome segregatio 98.4 9.1E-07 2E-11 111.0 10.7 79 409-487 796-883 (895)
455 PRK03918 chromosome segregatio 98.4 5.5E-07 1.2E-11 112.7 8.4 78 409-487 783-867 (880)
456 smart00382 AAA ATPases associa 98.4 5.2E-06 1.1E-10 77.8 12.4 116 352-473 3-125 (148)
457 TIGR02788 VirB11 P-type DNA tr 98.3 3.6E-07 7.8E-12 100.7 4.5 123 343-489 137-268 (308)
458 PRK06793 fliI flagellum-specif 98.3 1.4E-06 3.1E-11 99.1 8.8 144 339-492 145-301 (432)
459 PRK10246 exonuclease subunit S 98.2 1.7E-06 3.6E-11 109.9 8.3 70 408-478 943-1021(1047)
460 PTZ00132 GTP-binding nuclear p 98.2 1.6E-06 3.6E-11 90.1 6.3 49 412-461 148-204 (215)
461 TIGR02168 SMC_prok_B chromosom 98.2 2E-06 4.2E-11 110.6 7.7 77 408-486 1083-1164(1179)
462 TIGR02169 SMC_prok_A chromosom 98.2 1.8E-05 3.9E-10 101.9 16.1 77 409-487 1069-1150(1164)
463 cd01131 PilT Pilus retraction 98.2 2E-06 4.3E-11 88.8 5.8 117 353-485 3-120 (198)
464 TIGR00606 rad50 rad50. This fa 98.2 5.3E-06 1.2E-10 107.8 10.5 74 407-480 1192-1277(1311)
465 COG0419 SbcC ATPase involved i 98.1 5.7E-06 1.2E-10 103.9 7.7 79 409-488 810-897 (908)
466 TIGR03185 DNA_S_dndD DNA sulfu 98.0 0.00013 2.7E-09 88.7 18.0 45 326-372 5-49 (650)
467 cd01128 rho_factor Transcripti 97.9 2.6E-05 5.7E-10 83.3 7.5 73 414-491 129-211 (249)
468 cd01125 repA Hexameric Replica 97.9 3.3E-05 7.1E-10 82.0 7.8 45 429-474 109-159 (239)
469 PRK02224 chromosome segregatio 97.8 2.2E-05 4.9E-10 98.4 7.1 77 410-487 777-867 (880)
470 COG4637 Predicted ATPase [Gene 97.8 0.00015 3.3E-09 78.1 11.9 65 414-480 270-337 (373)
471 PRK13830 conjugal transfer pro 97.8 6.2E-05 1.4E-09 93.3 10.4 62 429-491 650-722 (818)
472 TIGR02903 spore_lon_C ATP-depe 97.8 0.00024 5.2E-09 85.5 14.9 34 433-473 267-300 (615)
473 cd02023 UMPK Uridine monophosp 97.8 1.6E-05 3.5E-10 81.6 4.0 92 353-446 1-113 (198)
474 cd00009 AAA The AAA+ (ATPases 97.8 0.00013 2.8E-09 69.0 10.0 106 352-475 20-131 (151)
475 COG0178 UvrA Excinuclease ATPa 97.8 9.2E-05 2E-09 88.1 9.7 89 399-488 465-557 (935)
476 PRK09183 transposase/IS protei 97.7 5E-05 1.1E-09 81.7 6.8 107 342-474 95-206 (259)
477 TIGR01420 pilT_fam pilus retra 97.7 5E-05 1.1E-09 85.0 6.5 116 352-483 123-239 (343)
478 cd01130 VirB11-like_ATPase Typ 97.7 2.3E-05 5E-10 80.0 3.5 28 343-371 18-45 (186)
479 PRK06995 flhF flagellar biosyn 97.7 0.00019 4.1E-09 83.2 10.9 93 342-443 248-346 (484)
480 PRK14721 flhF flagellar biosyn 97.7 0.00046 9.9E-09 78.9 13.8 90 348-448 189-284 (420)
481 TIGR03881 KaiC_arch_4 KaiC dom 97.7 0.00039 8.5E-09 73.0 12.4 125 347-474 17-166 (229)
482 PRK00064 recF recombination pr 97.6 6.9E-05 1.5E-09 84.5 6.5 79 409-491 268-359 (361)
483 TIGR00767 rho transcription te 97.6 0.0018 3.9E-08 73.1 17.0 46 325-371 129-188 (415)
484 cd00820 PEPCK_HprK Phosphoenol 97.6 5.7E-05 1.2E-09 70.1 4.0 29 342-371 7-35 (107)
485 PF05190 MutS_IV: MutS family 97.5 0.0013 2.8E-08 58.7 11.7 88 130-222 1-89 (92)
486 TIGR01026 fliI_yscN ATPase Fli 97.5 0.00061 1.3E-08 78.5 11.7 145 340-495 153-341 (440)
487 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00042 9.2E-09 72.9 9.4 127 347-474 16-170 (235)
488 TIGR02655 circ_KaiC circadian 97.5 6.6E-05 1.4E-09 87.9 3.4 124 347-475 18-168 (484)
489 TIGR00611 recf recF protein. A 97.4 0.00015 3.2E-09 81.9 5.7 59 413-475 274-342 (365)
490 PF13555 AAA_29: P-loop contai 97.4 0.00011 2.4E-09 61.2 3.4 29 343-371 15-43 (62)
491 PRK04296 thymidine kinase; Pro 97.4 0.00056 1.2E-08 70.1 9.3 127 352-489 3-142 (190)
492 PRK14722 flhF flagellar biosyn 97.4 0.00083 1.8E-08 75.7 11.4 103 342-453 129-238 (374)
493 TIGR00416 sms DNA repair prote 97.4 0.0009 1.9E-08 77.7 11.7 135 347-487 91-244 (454)
494 PRK10865 protein disaggregatio 97.4 0.0032 7E-08 78.6 17.3 113 352-478 200-321 (857)
495 PRK06731 flhF flagellar biosyn 97.4 0.0053 1.1E-07 66.5 16.7 97 349-454 74-178 (270)
496 PLN03210 Resistant to P. syrin 97.4 0.0012 2.6E-08 85.2 13.9 28 343-371 200-227 (1153)
497 cd01121 Sms Sms (bacterial rad 97.4 0.0012 2.6E-08 74.6 12.2 121 347-474 79-210 (372)
498 TIGR03015 pepcterm_ATPase puta 97.4 0.00075 1.6E-08 72.4 10.0 127 343-476 35-167 (269)
499 PRK03918 chromosome segregatio 97.4 0.0054 1.2E-07 77.1 19.1 28 344-373 18-45 (880)
500 TIGR03880 KaiC_arch_3 KaiC dom 97.4 0.00095 2.1E-08 70.0 10.4 122 347-473 13-153 (224)
No 1
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=4e-120 Score=1089.45 Aligned_cols=752 Identities=36% Similarity=0.529 Sum_probs=658.4
Q ss_pred CchHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHh-cCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Q 003258 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQ-SQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVW 79 (835)
Q Consensus 1 mG~~~l~~~~l~p~~~~~~i~~~l~~~~e~~~~~~-~~~~~l~~~~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~l~ 79 (835)
||++.++. ++|..|+++|+++|++|++|+.++. .+.+||++++|+++++.++..|++|++.||+.|+.+|..+..++
T Consensus 26 ~Gk~~l~~--l~P~~~~~~i~~~l~~~~e~~~~~~~~~~~~l~~~~Di~~~l~r~~~g~~l~~~eL~~i~~~l~~~~~l~ 103 (782)
T PRK00409 26 LGKEKVLQ--LDPETDFEEVEELLEETDEAAKLLRLKGLPPFEGVKDIDDALKRAEKGGVLSGDELLEIAKTLRYFRQLK 103 (782)
T ss_pred HHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 69999999 8999999999999999999998885 78899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003258 80 KKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQ 159 (835)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~i~~~id~~~~~i~d~aS~~L~~lR~~~~~~~~~l~~~l~~~~~~ 159 (835)
++|....+ ...++.|..++..+.++++|.+.|.+|||++| .|+|+|||+|++||+.+++...++++.+.++...
T Consensus 104 ~~l~~~~~-----~~~~~~L~~~~~~l~~~~~l~~~i~~~id~~g-~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~~ 177 (782)
T PRK00409 104 RFIEDLEE-----EEELPILEEWVAKIRTLPELEQEIHNCIDEEG-EVKDSASEKLRGIRRQLRRKKSRIREKLESIIRS 177 (782)
T ss_pred HHHHhccc-----ccchhHHHHHHHcCcCcHHHHHHHHHHhCCCC-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99974200 01367889999999999999999999999986 7999999999999999998888888887776543
Q ss_pred HHHhcCCCCcceeeccCcEEEEEecccccCCCCcEEEEEccCCcEEEeccchhhhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 003258 160 IFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTA 239 (835)
Q Consensus 160 ~~~~~~~~~~~i~~r~~r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~iep~~~v~lnn~~~~l~~~e~~ee~~il~~L~~ 239 (835)
.-...++++.++|+|++||||||+.++++.+| |++|+.|+||+|+|++|..++++||++.++..++.+++.+|+++|+.
T Consensus 178 ~~~~~~L~d~~it~r~~r~~i~vk~~~~~~~~-g~v~~~s~sg~t~y~ep~~~~~ln~~l~~l~~~~~~~~~~il~~l~~ 256 (782)
T PRK00409 178 KSLQKYLQDTIITIRNDRYVLPVKAEYKHAIK-GIVHDQSSSGATLYIEPQSVVELNNEIRELRNKEEQEIERILKELSA 256 (782)
T ss_pred cccccccccceEEEECCEEEEEechhhhccCC-CceeeEECCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21224577899999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCCCcceeeEccccCCccccccccccccccCCCCCCC
Q 003258 240 EIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLK 319 (835)
Q Consensus 240 ~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~~~~~~~~~~~~~ 319 (835)
.|..+.+.|..+++++++||+++|+|+||.+++||+|.+++.. .|.++++|||+|..
T Consensus 257 ~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~------~i~l~~~rHPll~~----------------- 313 (782)
T PRK00409 257 KVAKNLDFLKFLNKIFDELDFIFARARYAKALKATFPLFNDEG------KIDLRQARHPLLDG----------------- 313 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccceEcCCC------cEEEcCcCCceecc-----------------
Confidence 9999999999999999999999999999999999999998754 69999999999942
Q ss_pred CCCCCCeEEEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHH
Q 003258 320 SDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399 (835)
Q Consensus 320 ~~~g~~~l~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~ 399 (835)
..+||+|+.++.+.++++|||||||||||+||++|++++|+|+|+|+|+...+.+++|++||
T Consensus 314 ------------------~~~Vpndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~ 375 (782)
T PRK00409 314 ------------------EKVVPKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIF 375 (782)
T ss_pred ------------------CceECceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEE
Confidence 13789999998776899999999999999999999999999999999999667999999999
Q ss_pred HHcCCcccccCCcccchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhh
Q 003258 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (835)
Q Consensus 400 ~~ig~~~~~~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~ 479 (835)
+++|+.|++.+.+|+||+||++++.++..+++|+|+||||||+||||.++.+++.++++++.+.++++|+||||.++..+
T Consensus 376 ~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 376 ADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKAL 455 (782)
T ss_pred EecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHH
Confidence 99999999999999999999988888777799999999999999999999999999999999889999999999999998
Q ss_pred hcccccccCCceeecccccccchhcccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHH
Q 003258 480 KDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERR 559 (835)
Q Consensus 480 ~~~~~~~~n~~v~~~~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~~~~ii~~A~~~~~~~~~~~~~~~~e~~~~~le~~~~ 559 (835)
+.....+.|+++.|+.+++.|+|++..|+++.|||+.+|+++|+|++|+++|+.++.. +..++++++.+|++++.
T Consensus 456 ~~~~~~v~~~~~~~d~~~l~~~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~-----~~~~~~~li~~l~~~~~ 530 (782)
T PRK00409 456 MYNREGVENASVEFDEETLRPTYRLLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGE-----DKEKLNELIASLEELER 530 (782)
T ss_pred HhcCCCeEEEEEEEecCcCcEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999999999999999999999874 55689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 003258 560 KLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHLKAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINSLIK 639 (835)
Q Consensus 560 ~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (835)
+++++.+++++..+++++++++++++.+++++++.++.+++.+++++.+.++++++++++++|++...........+..+
T Consensus 531 ~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~ 610 (782)
T PRK00409 531 ELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELI 610 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987421100001122344
Q ss_pred HHHHHHHHHHHhcCCCCCCccccCCCCCCCCCCCCEEEEcccCCceEEEEEeeCCCceEEEEECceEEEEecCCcccCCC
Q 003258 640 ESESAIAAIVEAHRPDDDFSVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRVRVKKNNIRPIPN 719 (835)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~V~v~~~~~~~g~V~~~~~~~~~~~V~~g~~k~~v~~~~l~~~~~ 719 (835)
++++.+.+........ .. ........+++||.|+|.++|+ .|+|+++++ +++++|++|+|||+|+.++|.++..
T Consensus 611 ~~~~~l~~~~~~~~~~---~~-~~~~~~~~~~~Gd~V~v~~~~~-~g~v~~i~~-~~~~~V~~g~~k~~v~~~~l~~~~~ 684 (782)
T PRK00409 611 EARKRLNKANEKKEKK---KK-KQKEKQEELKVGDEVKYLSLGQ-KGEVLSIPD-DKEAIVQAGIMKMKVPLSDLEKIQK 684 (782)
T ss_pred HHHHHHHHhhhhhhhc---cc-cccccccCCCCCCEEEEccCCc-eEEEEEEcC-CCeEEEEECCEEEEEeHHHceeCcC
Confidence 4444444432211110 00 0011114589999999999998 699999974 4689999999999999999987653
Q ss_pred ccccCCCCCCccccccccccccCCCCCCCccccCCCCcCCCCCceeeccccHHHHHHHHHHHHHcc--CCCCcEEEEecc
Q 003258 720 SKRKNAANPAPRLRKQQEDRQSGSAGSSNEEASYGPRVQTSKNSLDLRGMRVEEASHQLDIALACW--ESRSVLFVIHGM 797 (835)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ldlrG~r~eEA~~~vd~~ld~a--~g~~~v~IiHG~ 797 (835)
....+. + . . .... +....++.+|||||||+|||+..||+|||+| +|++.|+||||+
T Consensus 685 ~~~~~~----~---~---~----~~~~--------~~~~~~~~~lDL~G~~~eeA~~~l~~fl~~a~~~g~~~v~IIHGk 742 (782)
T PRK00409 685 PKKKKK----K---K---P----KTVK--------PKPRTVSLELDLRGMRYEEALERLDKYLDDALLAGYGEVLIIHGK 742 (782)
T ss_pred CCcCcc----c---C---c----cccC--------CCCCCCCceEECCCCCHHHHHHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 211100 0 0 0 0000 0111356799999999999999999999997 899999999999
Q ss_pred cchHHHHHHHHHhhcCCCcccccCCCCCCC--ceEEEEEC
Q 003258 798 GTGVVKERVLEILRNHPRVAKYEQESPMNY--GCTVAYIK 835 (835)
Q Consensus 798 GtG~Lr~~v~~~L~~~p~V~~f~~~~~~~~--G~Tvv~~~ 835 (835)
|||+||++||+||++||+|++|++|+|++| |||||+||
T Consensus 743 GtG~Lr~~v~~~L~~~~~V~~f~~a~~~~GG~Gat~V~lk 782 (782)
T PRK00409 743 GTGKLRKGVQEFLKKHPSVKSFRDAPPNEGGFGVTIVELK 782 (782)
T ss_pred ChhHHHHHHHHHHcCCCceeeeeecCcccCCCeEEEEEEC
Confidence 999999999999999999999999999985 69999986
No 2
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=1.8e-117 Score=1063.61 Aligned_cols=741 Identities=32% Similarity=0.477 Sum_probs=652.2
Q ss_pred CchHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHhcCCCCCHHH-HHHHHHHHHHHHHHH
Q 003258 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSE-ICAVRRTLRAVNNVW 79 (835)
Q Consensus 1 mG~~~l~~~~l~p~~~~~~i~~~l~~~~e~~~~~~~~~~~l~~~~Di~~~l~r~~~g~~l~~~e-l~~i~~~l~~~~~l~ 79 (835)
+|++.+++ +.|+.++++|+++|++|++|..++. ++||+++.||++++.++..|.++++.| |+.|+.+|..+..++
T Consensus 26 ~gk~~~~~--l~P~~~~~~i~~~l~~~~e~~~~~~--~~~l~~~~di~~~l~r~~~g~~l~~~e~l~~i~~~l~~~~~l~ 101 (771)
T TIGR01069 26 LGKEDAIG--LKPPKSVEESKEIIIKLTALGSIEN--NVRFFGFEDIRELLKRAELGGIVKGLEYILVIQNALKTVKHLK 101 (771)
T ss_pred HHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHhhc--cCCcCCCccHHHHHHHHhcCCcCChHHHHHHHHHHHHHHHHHH
Confidence 58999999 9999999999999999999999887 889999999999999999999999988 999999999999999
Q ss_pred HHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003258 80 KKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQ 159 (835)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~i~~~id~~~~~i~d~aS~~L~~lR~~~~~~~~~l~~~l~~~~~~ 159 (835)
.++... ..+|.|..++..+.++++|.+.|.+|||++| .|+|+|||+|++||+++++++.++++.+..+...
T Consensus 102 ~~l~~~--------~~~~~L~~~~~~l~~~~~l~~~i~~~id~~g-~i~d~aS~~L~~ir~~~~~~~~~i~~~l~~~~~~ 172 (771)
T TIGR01069 102 VLSEHV--------LDLEILFHLRLNLITLPPLENDIIACIDDDG-KVKDGASEELDAIRESLKALEEEVVKRLHKIIRS 172 (771)
T ss_pred HHHhcc--------ccchHHHHHHhcCCCcHHHHHHHHHHhCCCC-EECCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999632 1378899999999999999999999999986 6999999999999999998888888877765432
Q ss_pred HHHhcCCCCcceeeccCcEEEEEecccccCCCCcEEEEEccCCcEEEeccchhhhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 003258 160 IFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTA 239 (835)
Q Consensus 160 ~~~~~~~~~~~i~~r~~r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~iep~~~v~lnn~~~~l~~~e~~ee~~il~~L~~ 239 (835)
.-...++++.+||+|++||||||++++++.+| |++|+.|+||+|+|+||.+++++||++.++..++.+++.+|+++|+.
T Consensus 173 ~~~~~~l~~~~it~r~~r~vipvk~~~~~~i~-g~v~~~S~sg~t~~~ep~~~~~ln~~l~~l~~~~~~e~~~il~~L~~ 251 (771)
T TIGR01069 173 KELAKYLSDTIVTIRNGRYVLPLKSGFKGKIK-GIVHDTSSSGETFYIEPQAIVKLNNKLAQLKNEEECEIEKILRTLSE 251 (771)
T ss_pred hchhhhhcCceEEEECCEEEEEeeHHHhhcCC-CeEEEEeCCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11124567899999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCCCcceeeEccccCCccccccccccccccCCCCCCC
Q 003258 240 EIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLK 319 (835)
Q Consensus 240 ~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~~~~~~~~~~~~~ 319 (835)
.|..+.+.|..++++++.||+++|+|+||..+++++|.+++++ .|.+.++|||++...
T Consensus 252 ~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~------~i~l~~~rhPll~~~---------------- 309 (771)
T TIGR01069 252 KVQEYLLELKFLFKEFDFLDSLQARARYAKAVKGEFPMPSFTG------KIILENARHPLLKEP---------------- 309 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeeceecCCC------CEEEccccCceecCC----------------
Confidence 9999999999999999999999999999999999999987754 699999999998410
Q ss_pred CCCCCCeEEEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHH
Q 003258 320 SDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399 (835)
Q Consensus 320 ~~~g~~~l~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~ 399 (835)
.+||+|+.+..+.++++||||||||||||||++|++++|+++|+++|+...+.+++|++++
T Consensus 310 -------------------~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~ 370 (771)
T TIGR01069 310 -------------------KVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIF 370 (771)
T ss_pred -------------------ceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhee
Confidence 2689999998877899999999999999999999999999999999998767899999999
Q ss_pred HHcCCcccccCCcccchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhh
Q 003258 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (835)
Q Consensus 400 ~~ig~~~~~~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~ 479 (835)
.++|+.+++...+|+||+||++++.++..+++|+||||||||+||||.++.+|+.++++++.+.|+++|+||||.+++.+
T Consensus 371 ~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 371 ADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKAL 450 (771)
T ss_pred eecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 99999999999999999999998888888899999999999999999999999999999999989999999999999999
Q ss_pred hcccccccCCceeecccccccchhcccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHH
Q 003258 480 KDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERR 559 (835)
Q Consensus 480 ~~~~~~~~n~~v~~~~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~~~~ii~~A~~~~~~~~~~~~~~~~e~~~~~le~~~~ 559 (835)
+.....+.|++|.|+.+++.|+|++.+|+|+.|||+.||+++|+|++|+++|+.++.. ...++++++.+|++++.
T Consensus 451 ~~~~~~v~~~~~~~d~~~l~p~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~-----~~~~~~~li~~L~~~~~ 525 (771)
T TIGR01069 451 MYNNEGVENASVLFDEETLSPTYKLLKGIPGESYAFEIAQRYGIPHFIIEQAKTFYGE-----FKEEINVLIEKLSALEK 525 (771)
T ss_pred hcCCCCeEEeEEEEcCCCCceEEEECCCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHH
Confidence 9888899999999999999999999999999999999999999999999999999874 45689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 003258 560 KLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHLKAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINSLIK 639 (835)
Q Consensus 560 ~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (835)
+++++.+++++..+++++.+++++++.+++++++.+...++.+++++.+.++++++++++++|++.... .+..+
T Consensus 526 ~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~~~~~------~~~~~ 599 (771)
T TIGR01069 526 ELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKEKKIH------KAKEI 599 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999974211 11233
Q ss_pred HHHHHHHHHHHhcCCCCCCccccCCCCCCCCCCCCEEEEcccCCceEEEEEeeCCCceEEEEECceEEEEecCCcccCCC
Q 003258 640 ESESAIAAIVEAHRPDDDFSVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRVRVKKNNIRPIPN 719 (835)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~V~v~~~~~~~g~V~~~~~~~~~~~V~~g~~k~~v~~~~l~~~~~ 719 (835)
++++.++......... . ......... ++||.|+|.++|+ .|+|+++++ +++++|++|+|||+|+.++|+++..
T Consensus 600 ~~~~~~~~~~~~~~~~---~-~~~~~~~~~-~~Gd~V~v~~~~~-~g~v~~i~~-~~~~~V~~g~~k~~v~~~~l~~~~~ 672 (771)
T TIGR01069 600 KSIEDLVKLKETKQKI---P-QKPTNFQAD-KIGDKVRIRYFGQ-KGKIVQILG-GNKWNVTVGGMRMKVHGSELEKINK 672 (771)
T ss_pred HHHHHHHHHHHhhccc---c-ccccccccC-CCCCEEEEccCCc-eEEEEEEcC-CCeEEEEECCEEEEEeHHHceeccc
Confidence 3333333322211010 0 000110123 8999999999998 699999974 5799999999999999999987643
Q ss_pred ccccCCCCCCccccccccccccCCCCCCCccccCCCCcCCCCCceeeccccHHHHHHHHHHHHHcc--CCCCcEEEEecc
Q 003258 720 SKRKNAANPAPRLRKQQEDRQSGSAGSSNEEASYGPRVQTSKNSLDLRGMRVEEASHQLDIALACW--ESRSVLFVIHGM 797 (835)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ldlrG~r~eEA~~~vd~~ld~a--~g~~~v~IiHG~ 797 (835)
....++ . + . . .... +....++++|||||||+|||+++||+|||+| +|++.|+|||||
T Consensus 673 ~~~~~~-~--~---~---~----~~~~--------~~~~~~~~~ldl~G~~~~eA~~~l~~~ld~a~~~g~~~v~IIHGk 731 (771)
T TIGR01069 673 APPPKK-F--K---V---P----KTTK--------PEPKEASLTLDLRGQRSEEALDRLEKFLNDALLAGYEVVLIIHGK 731 (771)
T ss_pred CCcCCc-c--c---c---c----cccc--------ccCCCCCceEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 110000 0 0 0 0 0000 0011356799999999999999999999997 999999999999
Q ss_pred cchHHHHHHHHHhhcCCCcccccCCCCCCC--ceEEEEEC
Q 003258 798 GTGVVKERVLEILRNHPRVAKYEQESPMNY--GCTVAYIK 835 (835)
Q Consensus 798 GtG~Lr~~v~~~L~~~p~V~~f~~~~~~~~--G~Tvv~~~ 835 (835)
|||+||++||+||++||+|++|++|+|++| |||||+|+
T Consensus 732 GtG~Lr~~v~~~L~~~~~V~~f~~a~~~~GG~G~t~V~l~ 771 (771)
T TIGR01069 732 GSGKLRKGVQELLKNHPKVKSFRDAPPNDGGSGVTIVYLE 771 (771)
T ss_pred ChhHHHHHHHHHhcCCcceeeecccCcccCCceEEEEEEC
Confidence 999999999999999999999999999986 68999985
No 3
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.2e-100 Score=900.18 Aligned_cols=725 Identities=33% Similarity=0.439 Sum_probs=636.9
Q ss_pred CchHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHh-cCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Q 003258 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQ-SQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVW 79 (835)
Q Consensus 1 mG~~~l~~~~l~p~~~~~~i~~~l~~~~e~~~~~~-~~~~~l~~~~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~l~ 79 (835)
.|++.++. +-|..+.+.+...+++|.++..++. .|.+|+.++.|+...+.++..|+.|.++||+.|..+|.....++
T Consensus 24 ~g~~~~~~--l~p~~~~~~i~~~~~e~~~~~~~~~~~g~~~~~~l~~i~~~l~~~e~g~~l~~~el~~i~~~l~~~~~lk 101 (753)
T COG1193 24 LGLEELKN--LKPRTDLELIEEELSETAEALDILEDEGLPPLGGLNDVSEALGRLEKGGRLHVEELLEISDFLRGFRALK 101 (753)
T ss_pred HHHHHHHh--cCccccHHHHHHHHHHHHHHHHHHhccCCCCchhhhhhHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHH
Confidence 37889999 9999999999999999999999997 58899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003258 80 KKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQ 159 (835)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~i~~~id~~~~~i~d~aS~~L~~lR~~~~~~~~~l~~~l~~~~~~ 159 (835)
+++..... .. ..++..+..++.+...|..+||.++ .|.|.||++|..||..++.....+.+.+..+...
T Consensus 102 r~~~~~e~--------~~--~~~~~~~~~~~~l~~~i~~~id~~g-~i~d~as~~l~~ir~~lr~~~~~i~~~l~~~~~~ 170 (753)
T COG1193 102 RAIKKLER--------IK--RTLALALIELSDLELEINIPIDDDG-LIKDRASFELDAIRRQLRDLEEEIRDKLESLIRS 170 (753)
T ss_pred HHHHHhhh--------HH--HHHHHhhhcchHHHHHHhhhhcccc-cccccccHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 99975422 11 4566778899999999999999986 6999999999999999876655555555443321
Q ss_pred HHHhcCCCCcceeeccCcEEEEEecccccCCCCcEEEEEccCCcEEEeccchhhhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 003258 160 IFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTA 239 (835)
Q Consensus 160 ~~~~~~~~~~~i~~r~~r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~iep~~~v~lnn~~~~l~~~e~~ee~~il~~L~~ 239 (835)
-- +..+++.+++.|++|||+||++.++..++ |++|+.|+||+|+|++|..++.+||++..+..+|+.|+.+|+++|+.
T Consensus 171 ~~-~~~L~e~~v~~r~~r~vlpvk~~fk~~i~-giv~d~sssg~tl~ieP~~vv~l~n~~~~l~~eE~~e~e~il~~lsa 248 (753)
T COG1193 171 KE-AKYLQDRIVTTRDGREVLPVKAEFKGAIK-GIVHDTSSSGATLYIEPRSVVKLNNELRALLVEEDEEEERILRELSA 248 (753)
T ss_pred hh-hHhhhhceEeccCCeEEeHHHHHhhhhcC-ceEeecccccCeeeecchHHHhhccHhhhhhccchHhHHHHHHHHHH
Confidence 10 34466999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCCCcceeeEccccCCccccccccccccccCCCCCCC
Q 003258 240 EIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLK 319 (835)
Q Consensus 240 ~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~~~~~~~~~~~~~ 319 (835)
.+.++.+.+..+...++++|++.|+++|+.++.++.|.+++.. .|.+.++|||+|..
T Consensus 249 ~v~~~~~~l~~~~~~~~~lD~i~Ak~~~~~~~~~v~P~~~~~~------~l~l~~~~HPll~~----------------- 305 (753)
T COG1193 249 LVAPVIPELEILLEIIGELDFIEAKVRYAKALKGVKPDFSNDG------VLELLDARHPLLKE----------------- 305 (753)
T ss_pred HHhhhhHHHHHHHHHhhhhHHHHHHHHHHHhhccCCCccCCCc------eEEeccccCccCcc-----------------
Confidence 9999999999999999999999999999999999999999654 79999999999942
Q ss_pred CCCCCCeEEEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHH
Q 003258 320 SDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399 (835)
Q Consensus 320 ~~~g~~~l~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~ 399 (835)
.|++++.++.....++|||||++||||.||++|++.+|+|+|+++|+...+.+++|+++|
T Consensus 306 --------------------~v~~~i~~~~e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gsei~~F~~i~ 365 (753)
T COG1193 306 --------------------DVPNDLELGEELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVFVKIF 365 (753)
T ss_pred --------------------ccccccccccccceeeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCCcchhHHHhh
Confidence 367788888777899999999999999999999999999999999999888999999999
Q ss_pred HHcCCcccccCCcccchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhh
Q 003258 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (835)
Q Consensus 400 ~~ig~~~~~~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~ 479 (835)
+++||+|++.+.+||||+||.+++.++.-++ +|+++||.++||||.+|++++.++++++.++++.+++|||+.+++.+
T Consensus 366 aDIGDeQsIeqsLSTFSshm~~i~~il~~~d--sLvl~DElg~GTdp~EgaaLai~ile~l~~~~~~~~~tTH~~elk~~ 443 (753)
T COG1193 366 ADIGDEQSIEQSLSTFSSHMTNIVEILEKAD--SLVLFDELGSGTDPDEGAALAIAILEDLLEKPAKIVATTHYRELKAL 443 (753)
T ss_pred hccCcHHHHHHHHhhhHHHHHHHHHHHhhcc--hhHHHHHhhcCCCcchhHHHHHHHHHHHHhcccceehHhhHHHHHHH
Confidence 9999999999999999999999999985444 89999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCceeecccccccchhcccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHH
Q 003258 480 KDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERR 559 (835)
Q Consensus 480 ~~~~~~~~n~~v~~~~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~~~~ii~~A~~~~~~~~~~~~~~~~e~~~~~le~~~~ 559 (835)
+.....+.|++|.|+.+++.|+|++.+|+||.|||+++|.++|+|..+++.|+..... +...++.++..++....
T Consensus 444 ~~~~~~v~nas~~fd~etL~ptY~l~~G~~g~S~Af~ia~rlGl~~~iie~a~~~~g~-----~~~~~~~~i~~l~~~~~ 518 (753)
T COG1193 444 AAEREGVENASMEFDAETLRPTYRLLEGVPGRSNAFDIALRLGLPEPIIEEAKTEFGE-----EKELLEELIEKLEEVRK 518 (753)
T ss_pred HhcchhhhchhhhhhHHHhhHHHHHhcCCcccchHHHHHHHcCCCHHHHHHHHHhcCc-----hHhHHHHHhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998863 56678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 003258 560 KLESQARTAASLHAEIMDLYREIEDEAKDLDRRAAHLKAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINSLIK 639 (835)
Q Consensus 560 ~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (835)
++++..+.++..+++.+.+...+......+.+...+....+..++...+.+++.++.+.+..++... ..
T Consensus 519 ~~~~~~~~~e~~~~e~~~l~~~~s~~~~~l~e~~~~~~~~a~~~~~~~~~~a~~e~~~~i~~~~~~~-----------~~ 587 (753)
T COG1193 519 ELEEELEEVEKLLDEVELLTGANSGGKTSLLELKAQIVVLAHMGLPVPAEEAKVEAVDEVKFLKKKK-----------GI 587 (753)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhH-----------HH
Confidence 9999999999999999999999999999999999999999999999999999999999888877211 11
Q ss_pred HHHHHHHHHHHhcCCCCCCccccCCCCCCCCCCCCEEEEcccCCceEEEEEeeCCCceEEEEECceEEEEecCCcccCCC
Q 003258 640 ESESAIAAIVEAHRPDDDFSVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRVRVKKNNIRPIPN 719 (835)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~V~v~~~~~~~g~V~~~~~~~~~~~V~~g~~k~~v~~~~l~~~~~ 719 (835)
....++....+.... ...+ ... ...+++||.|++.+ |+ .|.|+++.++.++|.|++|.|+|+|+..+++.+..
T Consensus 588 ~~~~~~e~~~~~~~~-~~~~---~~~-~~~l~~gDev~~~t-~e-~G~~~~i~a~~~e~~v~~g~~kv~V~~~~~~~~~~ 660 (753)
T COG1193 588 LDAGAFESTLKDKKN-KVLP---EAK-KRKLKLGDEVEVIT-GE-PGAVVKIIAGILEALVQSGILKVIVSHLDLEIIKE 660 (753)
T ss_pred HHHHHHHHHhhhhhc-ccCc---ccc-ccCceecceeEeec-CC-ccceeeeeccCceeEEecceeEEEEehhHHHHhcc
Confidence 111122221111000 0001 111 35689999999999 87 59999998777899999999999999999987652
Q ss_pred ccccCCCCCCccccccccccccCCCCCCCccccCCCCcCCCCCceeeccccHHHHHHHHHHHHHcc--CCCCcEEEEecc
Q 003258 720 SKRKNAANPAPRLRKQQEDRQSGSAGSSNEEASYGPRVQTSKNSLDLRGMRVEEASHQLDIALACW--ESRSVLFVIHGM 797 (835)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ldlrG~r~eEA~~~vd~~ld~a--~g~~~v~IiHG~ 797 (835)
.. +. +.+ + +. .+ ...++++||||+|+|+|+.+||+|+|+| +|+.+|+|||||
T Consensus 661 ~~--~~-k~k------------~--i~-------~~--~~~~~~ldLrg~r~e~a~~~l~k~i~eail~~~~~v~iihgk 714 (753)
T COG1193 661 EP--KV-KVK------------G--IE-------AP--GLDSNRLDLRGERSEEALDELDKSIDEAILEGYEKVSIIHGK 714 (753)
T ss_pred CC--CC-CCC------------C--cC-------CC--CCccccccccccccHHHHHHHHhhhHHHHHcCCcceeEEeee
Confidence 11 00 000 0 00 00 1125689999999999999999999997 999999999999
Q ss_pred cchHHHHHHHHHhhcCCCcccccCCCCCCC--ceEEEEE
Q 003258 798 GTGVVKERVLEILRNHPRVAKYEQESPMNY--GCTVAYI 834 (835)
Q Consensus 798 GtG~Lr~~v~~~L~~~p~V~~f~~~~~~~~--G~Tvv~~ 834 (835)
|||+||++|++||++||+|++|++|+|++| |||||+|
T Consensus 715 GtG~lre~v~~~Lk~~~~v~~~~~~~~~~GG~G~tiv~l 753 (753)
T COG1193 715 GTGKLREGVQEYLKKHKKVKSFRDAPPNEGGSGVTIVEL 753 (753)
T ss_pred echHHHHHHHHHHHhCCCccCcCCCCcCCCCCCeeEEeC
Confidence 999999999999999999999999999986 6999986
No 4
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=1.6e-70 Score=663.61 Aligned_cols=484 Identities=23% Similarity=0.326 Sum_probs=436.3
Q ss_pred CchHHHhhcCCCCCCCHHHHHHHHHHHHHHHH--HH-hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 003258 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--MM-QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (835)
Q Consensus 1 mG~~~l~~~~l~p~~~~~~i~~~l~~~~e~~~--~~-~~~~~~l~~~~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~ 77 (835)
||+|+|++|+++|+.|+++|++||+.++++.. .+ .....+|++++|+++++.|+..|. .++.||..++.+|..+..
T Consensus 284 ~G~RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~~~~l~~~l~~~L~~i~Dlerll~ri~~~~-~~~~dl~~l~~~l~~~~~ 362 (840)
T TIGR01070 284 MGSRLLKRWLHRPLRDREVLEARQDTVEVLLRHFFLREGLRPLLKEVGDLERLAARVALGN-ARPRDLARLRTSLEQLPE 362 (840)
T ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHhccCcCHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999987 33 345568999999999999999886 599999999999999999
Q ss_pred HHHHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhcc-------CCCcccCCcCHHHHHHHHHHHHHHHHHH
Q 003258 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDC-------KLLIILDRASEDLELIRAERKRNMENLD 150 (835)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~i~~~id~-------~~~~i~d~aS~~L~~lR~~~~~~~~~l~ 150 (835)
++.+|... ..+.+..+...+..+.++.+.|+++|++ +++.|+|++|++|+++|+..+...+++.
T Consensus 363 l~~~l~~~---------~~~~l~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~I~~g~~~~Ld~lr~~~~~~~~~l~ 433 (840)
T TIGR01070 363 LRALLEEL---------EGPTLQALAAQIDDFSELLELLEAALIENPPLVVRDGGLIREGYDEELDELRAASREGTDYLA 433 (840)
T ss_pred HHHHHHhc---------CcHHHHHHHHhcccHHHHHHHHHHHHhcCCccccccCCeeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99998642 1356777888888999999999999973 3457999999999999999887777776
Q ss_pred HHHHHHHHHHHHhcCCCCcceeec-cCcEEEEEecccccCCCCcEEEEEccCCcEEEeccchhhhhhHHHHHHhHHHHHH
Q 003258 151 SLLKKVAAQIFQAGGIDKPLITKR-RSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAE 229 (835)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~i~~r-~~r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~iep~~~v~lnn~~~~l~~~e~~e 229 (835)
++.+. +....++....+.+. ..||+|+|+..+...+|+.|++.+|.+|+++|++|. ++++++++..+..++..+
T Consensus 434 ~l~~~----~~~~~~i~~lk~~~~~~~gy~iev~~~~~~~vp~~~i~~~s~~~~~rf~tpe-l~~l~~~l~~~~~~~~~~ 508 (840)
T TIGR01070 434 RLEAR----ERERTGIPTLKVGYNAVFGYYIEVTRGQLHLVPAHYRRRQTLKNAERYITPE-LKEKEDKVLEAEGKILAL 508 (840)
T ss_pred HHHHH----HHHHcCCCceEEEEecCceEEEEEehhhhhcCCcceEEEEeccCceEEcCHH-HHHHHHHHHHHHHHHHHH
Confidence 65443 333456666666554 458999999999899997799999999999999997 999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCCCcceeeEccccCCccccccccccc
Q 003258 230 ETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLS 309 (835)
Q Consensus 230 e~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~~~ 309 (835)
+.+|+.+|...|..+.+.+..+.+.++.||+++|+|.+|.+++||+|.+++.. .|.|+++|||+++.. ..
T Consensus 509 e~~i~~~L~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~i~i~~~RHP~le~~-~~--- 578 (840)
T TIGR01070 509 EKELFEELRELLKKYLEALQEAARALAELDVLANLAEVAETLHYTRPRFGDDP------QLRIREGRHPVVEQV-LR--- 578 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCceecCCC------cEEEEeeECHHHHhc-cC---
Confidence 99999999999999999999999999999999999999999999999998764 699999999999421 10
Q ss_pred cccCCCCCCCCCCCCCeEEEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC
Q 003258 310 AASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (835)
Q Consensus 310 ~~~~~~~~~~~~~g~~~l~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~ 389 (835)
+.+||+|+.++.+.++++|||||||||||+||++|++++|||+|+||||+.
T Consensus 579 ----------------------------~~~VpNdi~l~~~~~~~iITGPNmgGKSt~lrqvali~imAq~G~~VPA~~- 629 (840)
T TIGR01070 579 ----------------------------TPFVPNDLEMAHNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPAES- 629 (840)
T ss_pred ----------------------------CCeEeeeeecCCCccEEEEECCCCCCchHHHHHHHHHHHHHhcCCCccchh-
Confidence 137899999987668999999999999999999999999999999999996
Q ss_pred CCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEE
Q 003258 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAV 468 (835)
Q Consensus 390 ~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vi 468 (835)
+.+++||+||+++|..|++.++.|||+.+|.+++.|+..+++++||||||+|+|||+.+|.+|++++++++.+ .++.+|
T Consensus 630 a~i~~~D~Iftrig~~d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~ 709 (840)
T TIGR01070 630 AELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTL 709 (840)
T ss_pred eEeccccEEEEecCcccchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998 789999
Q ss_pred EEecchhHHhhhcccccccCCceee--cccccccchhcccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHhh
Q 003258 469 VTTHYADLSCLKDKDTRFENAATEF--SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 538 (835)
Q Consensus 469 itTH~~el~~~~~~~~~~~n~~v~~--~~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~~~~ii~~A~~~~~~~ 538 (835)
++|||+++..++.....+.|.+|.+ +.+++.|+|++.+|.+++|||+++|+++|+|++|+++|+..+..+
T Consensus 710 ~~TH~~eL~~l~~~~~~v~n~~~~~~~~~~~l~flYkl~~G~~~~Sygi~VA~laGlP~~VI~rA~~il~~l 781 (840)
T TIGR01070 710 FATHYFELTALEESLPGLKNVHVAALEHNGTIVFLHQVLPGPASKSYGLAVAALAGLPKEVIARARQILTQL 781 (840)
T ss_pred EEcCchHHHHHhhhCCCeEEEEEEEEEECCcEEEEEEECCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999998888899999887 457899999999999999999999999999999999999988754
No 5
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=9.5e-68 Score=642.83 Aligned_cols=485 Identities=24% Similarity=0.352 Sum_probs=433.8
Q ss_pred CchHHHhhcCCCCCCCHHHHHHHHHHHHHHHH--HH-hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 003258 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--MM-QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (835)
Q Consensus 1 mG~~~l~~~~l~p~~~~~~i~~~l~~~~e~~~--~~-~~~~~~l~~~~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~ 77 (835)
||+|+|++|+++|+.|.++|++||+.++++.. .+ ......|++++|+++++.|+..|. .++.||..+..+|..+..
T Consensus 298 ~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~L~~i~Dlerll~ri~~~~-~~~~dl~~l~~~l~~~~~ 376 (854)
T PRK05399 298 MGGRLLRRWLHRPLRDREAIEARLDAVEELLEDPLLREDLRELLKGVYDLERLLSRIALGR-ANPRDLAALRDSLEALPE 376 (854)
T ss_pred HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999986 22 344458999999999999998887 489999999999999999
Q ss_pred HHHHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhccC-------CCcccCCcCHHHHHHHHHHHHHHHHHH
Q 003258 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDRASEDLELIRAERKRNMENLD 150 (835)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~i~~~id~~-------~~~i~d~aS~~L~~lR~~~~~~~~~l~ 150 (835)
++..+... ..+.+..+...+..+.++.+.|.++|+++ ++.|+|++|++|+++|+.++...++++
T Consensus 377 l~~~l~~~---------~~~~l~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~ 447 (854)
T PRK05399 377 LKELLAEL---------DSPLLAELAEQLDPLEELADLLERAIVEEPPLLIRDGGVIADGYDAELDELRALSDNGKDWLA 447 (854)
T ss_pred HHHHHHhc---------CcHHHHHHHhhcccHHHHHHHHHHHHccCCchhcccCCEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 99988642 13566777778888999999999999863 457999999999999999988888887
Q ss_pred HHHHHHHHHHHHhcCCCCcceeecc-CcEEEEEecccccCCCCcEEEEEccCCcEEEeccchhhhhhHHHHHHhHHHHHH
Q 003258 151 SLLKKVAAQIFQAGGIDKPLITKRR-SRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAE 229 (835)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~i~~r~-~r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~iep~~~v~lnn~~~~l~~~e~~e 229 (835)
++.++.. ...++....+.+.+ .+|+|+|+..+...+|++|++.++.+|.++|++|. +.++++++.++..++..+
T Consensus 448 ~~~~~~~----~~~~~~~l~~~~~~~~gy~iev~~~~~~~vp~~~~~~~s~~~~~rf~t~~-l~~l~~~l~~~~~~~~~~ 522 (854)
T PRK05399 448 ELEARER----ERTGISSLKVGYNKVFGYYIEVTKANLDKVPEDYIRRQTLKNAERYITPE-LKELEDKILSAEEKALAL 522 (854)
T ss_pred HHHHHHH----HHcCCCceEEEEcCceeEEEEEEcchhhhCChhhhheeeccCeEEEECHH-HHHHHHHHHHHHHHHHHH
Confidence 7765543 33455544444333 26999999998889997799999999999999997 999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCCCcceeeEccccCCccccccccccc
Q 003258 230 ETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLS 309 (835)
Q Consensus 230 e~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~~~ 309 (835)
+.+|+++|...+..+.+.+..+.++++.||+++|+|.+|.+++||+|.|++.+ .|.|+++|||+++.. +..
T Consensus 523 e~~i~~~l~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~l~i~~~rHP~le~~-~~~-- 593 (854)
T PRK05399 523 EYELFEELREEVAEHIERLQKLAKALAELDVLASLAEVAEENNYVRPEFTDDP------GIDIEEGRHPVVEQV-LGG-- 593 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCccccEEeCCC------CEEEEeccCcEEecc-cCC--
Confidence 99999999999999999999999999999999999999999999999998754 699999999999521 100
Q ss_pred cccCCCCCCCCCCCCCeEEEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC
Q 003258 310 AASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (835)
Q Consensus 310 ~~~~~~~~~~~~~g~~~l~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~ 389 (835)
+.+||+|+.+..+.++++|||||||||||+||++|++++|||+|+|||+..
T Consensus 594 ----------------------------~~~vpnd~~l~~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~- 644 (854)
T PRK05399 594 ----------------------------EPFVPNDCDLDEERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAES- 644 (854)
T ss_pred ----------------------------CceEecceeeCCCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceeccc-
Confidence 136899999986668999999999999999999999999999999999996
Q ss_pred CCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcC-CcEEE
Q 003258 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAV 468 (835)
Q Consensus 390 ~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~-~~~vi 468 (835)
+.+++||+||+++|..|++..+.|||+.+|.+++.++..+++++||||||||+||++.+|.++++++++++.+. ++++|
T Consensus 645 a~i~~~d~I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l 724 (854)
T PRK05399 645 ARIGIVDRIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTL 724 (854)
T ss_pred eEecccCeeeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999987 58999
Q ss_pred EEecchhHHhhhcccccccCCceeecc--cccccchhcccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHhh
Q 003258 469 VTTHYADLSCLKDKDTRFENAATEFSL--ETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 538 (835)
Q Consensus 469 itTH~~el~~~~~~~~~~~n~~v~~~~--~~l~~~Y~l~~g~~~~s~a~~ia~~~g~~~~ii~~A~~~~~~~ 538 (835)
++|||+++..++++...+.|.+|.++. +++.|+|++..|++++|||+++|+++|+|++|+++|+..+..+
T Consensus 725 ~aTH~~el~~l~~~~~~v~n~~m~~~~~~~~l~flYkl~~G~~~~SyGi~VA~laGlP~~VI~rA~~i~~~l 796 (854)
T PRK05399 725 FATHYHELTELEEKLPGVKNVHVAVKEHGGDIVFLHKVVPGAADKSYGIHVAKLAGLPASVIKRAREILAQL 796 (854)
T ss_pred EEechHHHHHHhhhcCCeEEEEEEEEEeCCeEEEEEEeCcCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999998899999998875 6899999999999999999999999999999999999988754
No 6
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.3e-63 Score=595.22 Aligned_cols=490 Identities=24% Similarity=0.346 Sum_probs=431.0
Q ss_pred CchHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH---hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 003258 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMM---QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (835)
Q Consensus 1 mG~~~l~~~~l~p~~~~~~i~~~l~~~~e~~~~~---~~~~~~l~~~~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~ 77 (835)
||+|+++.|+++|+.|.++|+.+|+-++++..-. +.....|+.++|+++++.|+..|.. +|+||..+++++..+..
T Consensus 296 mG~RlL~~wl~~PL~~~~~I~~Rld~Ve~l~~~~~l~~~L~~~L~~v~DleRl~~Rl~~~~~-~~rDl~~l~~~l~~~~~ 374 (843)
T COG0249 296 MGSRLLKRWLLQPLLDKEEIEERLDAVEELKDNPELREKLREMLKKVPDLERLLSRLSLGRA-SPRDLLRLRDSLEKIPE 374 (843)
T ss_pred hhHHHHHHHhhCcccCHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCcCHHHHHHHHHcCCC-ChhhHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998842 3344478999999999999999996 89999999999999999
Q ss_pred HHHHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhccCC------CcccCCcCHHHHHHHHHHHHHHHHHHH
Q 003258 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKL------LIILDRASEDLELIRAERKRNMENLDS 151 (835)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~i~~~id~~~------~~i~d~aS~~L~~lR~~~~~~~~~l~~ 151 (835)
++..+..... ...+..+...+..++.+.++...+..+|.++. +.|+++++++|+++|.......+|+.+
T Consensus 375 i~~~l~~~~~-----~~~l~~~~~~i~~~~~~~e~~~ll~~~i~~~~~~~~~~~ii~~g~~~eLd~lr~~~~~~~~~i~~ 449 (843)
T COG0249 375 IFKLLSSLKS-----ESDLLLLLEDIESLDYLAELLELLETAINEDPPLAVRDGIIKEGYNIELDELRDLLNNAKEWIAK 449 (843)
T ss_pred HHHHHhcccc-----chhhhHHhhhhhccccHHHHHHHHHHHhhhcchhhcchhHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 9999875421 11122333322245446688899999998654 268999999999999998876666665
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccC-cEEEEEecccccCCCCcEEEEEccCCcEEEeccchhhhhhHHHHHHhHHHHHHH
Q 003258 152 LLKKVAAQIFQAGGIDKPLITKRRS-RMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEE 230 (835)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~i~~r~~-r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~iep~~~v~lnn~~~~l~~~e~~ee 230 (835)
+... .....|+....+.+++. +|+|.|+......+|.++++.++.+++.+|++|. +.+++.++...+......|
T Consensus 450 le~~----~r~~~gi~slki~~n~v~Gy~ievt~~~~~~~p~~~ir~qt~kn~~rf~t~e-l~~~e~~i~~a~~~i~~lE 524 (843)
T COG0249 450 LELE----ERERTGIKSLKIKYNKVYGYYIEVTKSNAKLVPDDYIRRQTLKNAERFTTPE-LKELEEKLLDAEEKILALE 524 (843)
T ss_pred HHHH----HHHhcCCchhhhhhhccceeEEEechhccccCchHHHHHHHHhcceEecCHH-HHHHHHHHHHHHHHHHHHH
Confidence 5433 44567888888887776 8999999999999998899999999999999995 7778888877888888899
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCCCcceeeEccccCCcccccccccccc
Q 003258 231 TAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSA 310 (835)
Q Consensus 231 ~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~~~~ 310 (835)
.+++.++.+.+..|.+.++.+...++.||+++++|.+|...+||+|++++.. .+.|+++|||+++. ...+
T Consensus 525 ~~l~~~~~~~i~~~~~~l~~~a~aLa~lD~l~slA~~a~~~~y~rP~~~~~~------~l~i~~gRHPvvE~-~~~~--- 594 (843)
T COG0249 525 YELFDELREKILAHINELQALAKALAELDVLSSLAEIAAEQNYVRPEFVDSN------DLEIKEGRHPVVEA-VLDN--- 594 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceecCCC------CEEEEecCcchhhh-hccC---
Confidence 9999999999999999999999999999999999999999999999999865 39999999999953 2211
Q ss_pred ccCCCCCCCCCCCCCeEEEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCC
Q 003258 311 ASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP 390 (835)
Q Consensus 311 ~~~~~~~~~~~~g~~~l~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~ 390 (835)
.+||||+.+++..++++|||||||||||+||++|++++|||+|+||||+. +
T Consensus 595 ----------------------------~fVpNd~~L~~~~~i~lITGPNM~GKSTylRQvali~imAQiGsfVPA~~-A 645 (843)
T COG0249 595 ----------------------------GFVPNDIDLSGNRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPAEK-A 645 (843)
T ss_pred ----------------------------CcccCceeeCCCceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCeeHHH-c
Confidence 26899999998559999999999999999999999999999999999996 8
Q ss_pred CchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcC-CcEEEE
Q 003258 391 RLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVV 469 (835)
Q Consensus 391 ~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~-~~~vii 469 (835)
.+++||+||+++|..|++.++-|||+.+|.+++.|+..+++.+||||||.|+||++.+|.+|++|+++|+.+. ++.+||
T Consensus 646 ~i~ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGRGTsT~DGlaIA~Av~eyL~~~~~~~tLF 725 (843)
T COG0249 646 RIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCRTLF 725 (843)
T ss_pred cccccceeeecccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecccCCCCcchhHHHHHHHHHHHHhccCceEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999995 899999
Q ss_pred EecchhHHhhhcccccccCCceeec--ccccccchhcccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHhhch
Q 003258 470 TTHYADLSCLKDKDTRFENAATEFS--LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRP 540 (835)
Q Consensus 470 tTH~~el~~~~~~~~~~~n~~v~~~--~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~~~~ii~~A~~~~~~~~~ 540 (835)
+|||+++..+......+.|.++... .+++.+.|++..|.+.+|||+++|+.+|+|.+|+++|++.+..++.
T Consensus 726 ATHy~ELt~l~~~~~~v~N~h~~~~e~~~~i~Fl~kv~~G~a~~SyGi~VAklaGlP~~Vi~rA~~il~~le~ 798 (843)
T COG0249 726 ATHYHELTELEEKLPQVKNYHMSAVEEGGDITFLYKVKPGIADKSYGIHVAKLAGLPEEVIERAREILAELEK 798 (843)
T ss_pred eccHHHHHHhhhcccccceeEEEEEEcCCceEEEEEeccCCCCccHHHHHHHHhCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999888888877643 4568899999999999999999999999999999999999887643
No 7
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-48 Score=436.31 Aligned_cols=495 Identities=20% Similarity=0.264 Sum_probs=366.9
Q ss_pred CchHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHh------cCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 003258 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQ------SQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRA 74 (835)
Q Consensus 1 mG~~~l~~~~l~p~~~~~~i~~~l~~~~e~~~~~~------~~~~~l~~~~Di~~~l~r~~~g~~l~~~el~~i~~~l~~ 74 (835)
.|+|+|+.|..+|+.|...|..+|+.++|.-.... .-.--|..++||.+.|.|+--|.+-+..|++.+...+-.
T Consensus 494 fG~RmLr~WvtkPLvd~~~I~eRLDAVeeitshssnS~vf~si~~~l~rlpDl~rgL~rIy~~tCtp~~eff~vlk~iy~ 573 (1070)
T KOG0218|consen 494 FGLRMLREWVTKPLVDVHQIEERLDAVEEITSHSSNSIVFESINQMLNRLPDLLRGLNRIYYGTCTPRKEFFFVLKQIYS 573 (1070)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCcHhHhhHHHHhcccCCcHHHHHHHHHHHHH
Confidence 38999999999999999999999999998832111 111246789999999999998887444898888776655
Q ss_pred HHH----HHHHHHHhhhccCCcccccchHHHHHhcC------CChHHHHHHHhhhhccCCC---cccCCc-CHHHHHHHH
Q 003258 75 VNN----VWKKLTEAAELDGDSLQRYSPLLELLKNC------NFLTELEEKIGFCIDCKLL---IILDRA-SEDLELIRA 140 (835)
Q Consensus 75 ~~~----l~~~l~~~~~~~~~~~~~~~~l~~l~~~l------~~~~~l~~~i~~~id~~~~---~i~d~a-S~~L~~lR~ 140 (835)
+.. +..++.........+..+.+.|..++..+ ...+.+...++..-...+. .++|-. -|.+++-+.
T Consensus 574 a~s~fq~~~~~~~~~~~s~~~s~~qS~LLrrlisel~~p~~~s~~~hfL~mln~~aa~~gnk~d~fkd~snfpl~~e~~d 653 (1070)
T KOG0218|consen 574 AVSHFQMHQSYLEHFKSSDGRSGKQSPLLRRLISELNEPLSTSQLPHFLTMLNVSAAMEGNKDDQFKDFSNFPLYDESED 653 (1070)
T ss_pred HHHHHHHHhhhhhhhccccccchhccHHHHHHHHHhcCccccccHHHHHHHhhHHHHhhCChHHhhhhhccCcchhhhhh
Confidence 443 22233211000111122345566666554 2344554444322211111 122211 122222222
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeccCcEEEEEecccccCCCCcEEEEEccCCcEEEeccchhhh
Q 003258 141 ------ERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVE 214 (835)
Q Consensus 141 ------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~r~~r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~iep~~~v~ 214 (835)
+..-.+..+..-|.+. ++++.... -.+.++.+..|+|.|+......+|..||.-.|..-..+|..|. ++.
T Consensus 654 i~~virE~~ms~~~~~~hLaei-Rk~Lk~pn--lef~~vsgv~flIEvkns~~kkiP~dWiKvnsTk~vsRfhtP~-iq~ 729 (1070)
T KOG0218|consen 654 IIKVIRESEMSRSQLKEHLAEI-RKYLKRPN--LEFRQVSGVDFLIEVKNSQIKKIPDDWIKVNSTKMVSRFHTPR-IQK 729 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhcCCC--ceeEEecCeeEEEEecccccccCCccceeeccceeeeecCCHH-HHH
Confidence 1111122233333332 23443222 1234445568999999888889999999988887888888885 555
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCCCcceeeEcc
Q 003258 215 FNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEG 294 (835)
Q Consensus 215 lnn~~~~l~~~e~~ee~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~ 294 (835)
+-.++......-..+-...++..-..+.+|..+++++...++.+||++++|+.+..-|||||+|+++. ..|.|++
T Consensus 730 ~l~eL~~~~e~L~i~sea~~~sFL~kiSehYtelrkat~~LatlDCi~SlA~~s~n~nYvRPtfvd~~-----~eI~ikn 804 (1070)
T KOG0218|consen 730 LLQELEYYKELLIIESEAQYKSFLNKISEHYTELRKATLNLATLDCILSLAATSCNVNYVRPTFVDGQ-----QEIIIKN 804 (1070)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCcccccch-----hhhhhhc
Confidence 54444433333233445677888889999999999999999999999999999999999999999853 2699999
Q ss_pred ccCCccccccccccccccCCCCCCCCCCCCCeEEEeeeeeecCCceeccceeecC-CceEEEEEcCCCCChhhHHhhHHh
Q 003258 295 IKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVEC-ETRVVVITGPNTGGKTASMKTLGL 373 (835)
Q Consensus 295 ~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~ls~~y~~~~v~isl~l~~-g~~~~~I~GpNGsGKSTlLK~iGl 373 (835)
||||+++ ..+.. .+||+++.+.+ |.++.+||||||||||.++|+++|
T Consensus 805 gRhPvIe-~Ll~d-------------------------------~fVPNdi~ls~egerc~IITGPNMGGKSsyIrQvAL 852 (1070)
T KOG0218|consen 805 GRHPVIE-SLLVD-------------------------------YFVPNDIMLSPEGERCNIITGPNMGGKSSYIRQVAL 852 (1070)
T ss_pred CCCchHH-HHhhh-------------------------------ccCCCcceecCCCceEEEEeCCCCCCchHHHHHHHH
Confidence 9999994 32221 36888887754 358999999999999999999999
Q ss_pred hhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHH
Q 003258 374 ASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALA 453 (835)
Q Consensus 374 i~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~ 453 (835)
+.+|||.|+|||++. +.+++||.||++||..|++..+-|||..+|.....++..++..+||||||.|+||...+|.||+
T Consensus 853 itIMAQiGsfVPAee-a~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~kat~~SlvilDElGRGTsThDGiAIs 931 (1070)
T KOG0218|consen 853 ITIMAQIGSFVPAEE-ARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILKKATKRSLVILDELGRGTSTHDGIAIS 931 (1070)
T ss_pred HHHHHHhcCccchHH-hhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHHhcccchhhhhHhhcCCCccccchhHH
Confidence 999999999999997 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC-CcEEEEEecchhHHhhhccccc-ccCCceee---------cccccccchhcccCCCCCchHHHHHHHcC
Q 003258 454 TSILQYLRDR-VGLAVVTTHYADLSCLKDKDTR-FENAATEF---------SLETLRPTYRILWGSTGDSNALNIAKSIG 522 (835)
Q Consensus 454 ~all~~l~~~-~~~viitTH~~el~~~~~~~~~-~~n~~v~~---------~~~~l~~~Y~l~~g~~~~s~a~~ia~~~g 522 (835)
.|.++|+.+. .+.++|||||+.+..+...... +.|.+|.| |...+.++|++..|.+.+||++.+|+.++
T Consensus 932 YAtL~yf~~~~k~l~LFvTHfP~l~eie~~f~gqv~nyHmgyl~sedk~~~d~dsVtfLYklvrGlasrSyGlnVAklA~ 1011 (1070)
T KOG0218|consen 932 YATLKYFSELSKCLILFVTHFPMLGEIESGFPGQVRNYHMGYLESEDKTGEDWDSVTFLYKLVRGLASRSYGLNVAKLAR 1011 (1070)
T ss_pred HHHHHHHHHhhceeEEeeecCcchhhhhcCCCccccceeeeeeeeccccCCCchhhhhHHHHhhhhhhccccccHHHHhC
Confidence 9999999865 5789999999998887765544 45555544 33467889999999999999999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 003258 523 FDRKIIQRAQKLVER 537 (835)
Q Consensus 523 ~~~~ii~~A~~~~~~ 537 (835)
+|.+++.+|-.....
T Consensus 1012 ip~sii~rA~siSee 1026 (1070)
T KOG0218|consen 1012 IPKSIINRAFSISEE 1026 (1070)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999876653
No 8
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=2.4e-45 Score=417.79 Aligned_cols=486 Identities=19% Similarity=0.276 Sum_probs=389.6
Q ss_pred CchHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHh----cCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 003258 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQ----SQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN 76 (835)
Q Consensus 1 mG~~~l~~~~l~p~~~~~~i~~~l~~~~e~~~~~~----~~~~~l~~~~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~ 76 (835)
||.++++.|.-+|+.+...++.+++.+.+.+...+ -..--|..++||.+++.++..+ +..+...+......+.
T Consensus 326 ~G~rll~~w~~qpL~~~~ri~~r~d~v~~l~~~~~~rq~L~~~lL~~~pdi~rl~~~l~~~---~L~d~~r~yq~~~~l~ 402 (902)
T KOG0219|consen 326 QGERLLRQWLKQPLRDIDRINERHDLVEALVEDAEIRQKLRDDLLRRIPDISRLARRLMKA---NLQDVNRIYQAAKLLP 402 (902)
T ss_pred cchhhhhhhhhcchHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhhcChhHHHhhhhhhhc---chHHHHHHHHHHHHhH
Confidence 69999999999999999999999999987665432 0122467899999999998732 4567777777666666
Q ss_pred HHHHHHHHhhhccCCcccccchHH-HHHhcCCChHHHHHHHhhhhcc-----CCCcccCCcCHHHHHHHHHHHHHHHHHH
Q 003258 77 NVWKKLTEAAELDGDSLQRYSPLL-ELLKNCNFLTELEEKIGFCIDC-----KLLIILDRASEDLELIRAERKRNMENLD 150 (835)
Q Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~l~-~l~~~l~~~~~l~~~i~~~id~-----~~~~i~d~aS~~L~~lR~~~~~~~~~l~ 150 (835)
.+...|....+ . .-..|. .+...+..+..+...+...+|. +...|+.+++|+|.+||+.+.+++..++
T Consensus 403 ~~~~~l~~~~~---~---~~~ll~~~l~~~~~~~~kf~~~ve~t~D~da~ee~ey~VR~eFdeeL~eLrq~LdeL~~~m~ 476 (902)
T KOG0219|consen 403 TVVQVLISLSE---S---HNRLLKSPLTEHLKKLEKFQEMVETTVDLDAEEENEYRVRVDFDEELQELREKLDELERKME 476 (902)
T ss_pred HHHHHHHhhhh---h---hhhhhhhhhhhhhhhHHHHHHHHHHHhhHhHHhcCcEEEecccCHHHHHHHHHHHHHHHHHH
Confidence 66555543211 0 001111 2334455566777777777773 2346999999999999999999988888
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccC---cEEEEEecccccCC--CCcEEEEEccCCcEEEeccchhhhhhHHHHHHhHH
Q 003258 151 SLLKKVAAQIFQAGGIDKPLITKRRS---RMCVGIKASHKYLL--PDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNS 225 (835)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~i~~r~~---r~vi~v~~~~~~~~--~~g~v~~~s~sg~t~~iep~~~v~lnn~~~~l~~~ 225 (835)
+..++....+-+++ +..+...+. +||+-+.......+ +.++..-.+..| .+|++....-.|||+....+-+
T Consensus 477 ~~hkrv~~dl~~D~---~kklkLe~~~~~G~~~RlTr~e~~~LR~~k~y~eLstqK~-GV~FTtk~L~slN~e~~~~qk~ 552 (902)
T KOG0219|consen 477 KLHKKVSADLGLDP---KKQLKLENSAQFGWYFRVTRKEEKVLRKKKNYTELSTQKG-GVKFTTKKLSSLNDEFMSLQKE 552 (902)
T ss_pred HHHHHHHhhcCCCc---ccceeeeccchhheeeeeeehhhhHhhccCCceEEEEeeC-cEEEEhhhHhhhHHHHHHHHHH
Confidence 88777654433321 222333332 78887765332211 235554444445 6777777799999999999888
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCccccccCCCCCCCcceeeEccccCCccccc
Q 003258 226 EIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQ--WMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGS 303 (835)
Q Consensus 226 e~~ee~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~--~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~ 303 (835)
.+..+..|.+++..--..|.+.|....+.++.||++.|+|..|. ...|+||.+.+.+ ...+.++++|||+++.+
T Consensus 553 Y~~~Q~~ivrevikia~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~g----s~rl~l~~~rHp~lE~Q 628 (902)
T KOG0219|consen 553 YDEAQNEIVREIIKIAATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLG----SKRLELKQSRHPVLEGQ 628 (902)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccc----hhHHHHHhcccchhhcc
Confidence 88888899999999999999999999999999999999999987 6789999987754 22689999999999643
Q ss_pred cccccccccCCCCCCCCCCCCCeEEEeeeeeecCCceeccceeec--CCceEEEEEcCCCCChhhHHhhHHhhhhhcccc
Q 003258 304 SLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVE--CETRVVVITGPNTGGKTASMKTLGLASLMSKAG 381 (835)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~g~~~l~~~~ls~~y~~~~v~isl~l~--~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G 381 (835)
.. -.++|+|..++ ++ ++++||||||+||||++|+.|.+++|||+|
T Consensus 629 d~--------------------------------~~fIpNdv~le~~~~-~~~IiTGpNMGGKSTyir~~Gvi~lmAQIG 675 (902)
T KOG0219|consen 629 DE--------------------------------IPFIPNDVVLEKGKC-RMLIITGPNMGGKSTYIRQVGVIVLMAQIG 675 (902)
T ss_pred cc--------------------------------CCCCCCccccccCCc-eEEEEeCCCcCccchhhhhhhHHHHHHHhC
Confidence 10 02567777776 55 999999999999999999999999999999
Q ss_pred eeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHh
Q 003258 382 LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 461 (835)
Q Consensus 382 ~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~ 461 (835)
+|+|++. +.++++|.|++++|..++..+++||||.+|-..+.|+.++++.+||++||||+||...+|-.++||+-+++.
T Consensus 676 cfVPce~-A~i~IvD~Il~RVGA~D~q~kG~STFM~Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~ 754 (902)
T KOG0219|consen 676 CFVPCES-ATISIVDGILTRVGAGDSQLKGISTFMAEMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIA 754 (902)
T ss_pred Cceehhh-cCCchhhHHHhhhccchhhhcchHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHH
Confidence 9999996 899999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cC-CcEEEEEecchhHHhhhcccccccCCceeec--ccccccchhcccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHh
Q 003258 462 DR-VGLAVVTTHYADLSCLKDKDTRFENAATEFS--LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVER 537 (835)
Q Consensus 462 ~~-~~~viitTH~~el~~~~~~~~~~~n~~v~~~--~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~~~~ii~~A~~~~~~ 537 (835)
.+ ++..|++||++++..++.....+.|-+|... .+++.-.|.+..|+++.|+++.+|+..|+|+.+++.|+.....
T Consensus 755 ~ki~cf~lfATHfhElt~lae~~~~vKn~h~~a~i~~~~~~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~e 833 (902)
T KOG0219|consen 755 TKIGCFCLFATHFHELTKLAEQLPTVKNLHVTAQIENDDITLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEE 833 (902)
T ss_pred HHHhHhHHHHhHHHHHHhhhhhhhhhhhheeeeEecCcchhhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHH
Confidence 65 6789999999999999999888888777644 3467778999999999999999999999999999999988764
No 9
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-43 Score=391.86 Aligned_cols=486 Identities=21% Similarity=0.242 Sum_probs=381.5
Q ss_pred chHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH-----hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 003258 2 GHAVVQKAQIPFGKSLEESQKLLNQTSAALAMM-----QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN 76 (835)
Q Consensus 2 G~~~l~~~~l~p~~~~~~i~~~l~~~~e~~~~~-----~~~~~~l~~~~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~ 76 (835)
|++.||.|+..|.+|..++..+++-+.-++.-- +..+-.++.++|+-.++++.+.|.. ...+|.-++.++..+-
T Consensus 281 g~k~Lr~Wf~nPttd~~~l~sR~~~i~~fl~~qNa~~~~~Ls~~lgr~k~~~~~~~~~~sg~t-~l~~W~~~~stv~~~~ 359 (849)
T KOG0221|consen 281 GEKLLRLWFTNPTTDLGELSSRLDVIQFFLLPQNADMAQMLSRLLGRIKNVPLILKRMKSGHT-KLSDWQVLYSTVYSAL 359 (849)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhcccHHHHHHHHhcCCc-eechHHHHHHHHHHHH
Confidence 899999999999999999999988776443211 1112357889999999999999886 6789999999999999
Q ss_pred HHHHHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhccCC------CcccCCcCHHHHHHHHHHHHHHHHHH
Q 003258 77 NVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKL------LIILDRASEDLELIRAERKRNMENLD 150 (835)
Q Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~i~~~id~~~------~~i~d~aS~~L~~lR~~~~~~~~~l~ 150 (835)
.+++.+..... ..+++...+ -..+..+.++...+..+||-++ ..|.++.+|+|++.|+.+.. +.
T Consensus 360 ~i~~~~rslp~-----s~~~~~~~~-~~~~~~l~eia~~~g~vIdF~~S~~~~r~Tv~~giD~elDE~r~~y~~----lp 429 (849)
T KOG0221|consen 360 GIRDACRSLPQ-----SIQLFRDIA-QEFSDDLHEIASLIGKVIDFEGSLAENRFTVLPGIDPELDEKRRRYMG----LP 429 (849)
T ss_pred HHHHHHHhCcc-----chhhhhHHH-HHHHHHHHHHHHHhhheeccccccccceEEecCCCChHHHHHHHHHcc----ch
Confidence 99988875421 111221110 0123456777788888888543 26889999999999987544 55
Q ss_pred HHHHHHHHHHHHh---cCCCCcceeeccCcEEEEEecccccCCC----CcEEEEEccCCcEEEeccchhhhhhHHHHHHh
Q 003258 151 SLLKKVAAQIFQA---GGIDKPLITKRRSRMCVGIKASHKYLLP----DGIALNVSSSGATYFMEPKGAVEFNNMEVRLS 223 (835)
Q Consensus 151 ~~l~~~~~~~~~~---~~~~~~~i~~r~~r~vi~v~~~~~~~~~----~g~v~~~s~sg~t~~iep~~~v~lnn~~~~l~ 223 (835)
.+|.+.+++.... .-.+-..|.+---+|++.|..-+.-... .|+-.-. .|...+|+....+.+|.+.+.++-
T Consensus 430 ~~Lt~vAr~e~~~L~~~~psv~~VYIPliGfllsiprl~~~~~~~d~~~~~~~mf-~s~E~l~~rnart~eLD~~~GDIy 508 (849)
T KOG0221|consen 430 SFLTEVARKELENLDSRIPSVSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMF-LSEEKLHYRNARTKELDALLGDIY 508 (849)
T ss_pred HHHHHHHHHHHHhhCCCCCceeEEEeeceeeEEecccccchhhcCCcccchHHHh-cccceeEeecccHHhHHHHhhhHH
Confidence 5665555433221 1122334444445777766543322111 1222212 244567777777899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCCCcceeeEccccCCccccc
Q 003258 224 NSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGS 303 (835)
Q Consensus 224 ~~e~~ee~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~ 303 (835)
-++..-|..|+-.|..+|......|.+...+.++||+++|+|..|.++||++|.++++. -.+.|.++|||+.+.
T Consensus 509 ~~i~D~et~i~~~Lq~qvl~rk~~lt~~l~laSrldvLls~a~~aa~~gy~~P~lv~e~-----~il~I~ngrh~l~e~- 582 (849)
T KOG0221|consen 509 CEIRDQETLIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAADYGYSRPRLVPEV-----LILRIQNGRHPLMEL- 582 (849)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccHH-----HHHHHHcCChhHHHH-
Confidence 99888899999999999999999999999999999999999999999999999999875 147999999999842
Q ss_pred cccccccccCCCCCCCCCCCCCeEEEeeeeeecCCceeccceeec-CCceEEEEEcCCCCChhhHHhhHHhhhhhcccce
Q 003258 304 SLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVE-CETRVVVITGPNTGGKTASMKTLGLASLMSKAGL 382 (835)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~g~~~l~~~~ls~~y~~~~v~isl~l~-~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~ 382 (835)
... .+||++..++ .+.++.+|||||.||||++||++||+++|++.|+
T Consensus 583 ~~d--------------------------------tfvPNst~iggdkgri~vITGpNasGKSiYlkqvglivfLahIGs 630 (849)
T KOG0221|consen 583 CAD--------------------------------TFVPNSTEIGGDKGRIKVITGPNASGKSIYLKQVGLIVFLAHIGS 630 (849)
T ss_pred HHH--------------------------------hcCCCceeecCCCceEEEEeCCCCCCceEEEeechhhhHHHhhcc
Confidence 111 3678888886 3349999999999999999999999999999999
Q ss_pred eecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc
Q 003258 383 YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462 (835)
Q Consensus 383 ~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~ 462 (835)
|||++. +.++.+|+||++|+.-+++....|||.-...|++.++..|+..+|+|+||.|.||+..+|..|..+++.++..
T Consensus 631 FVPAe~-A~IGivDrI~tri~s~esv~~gqSTFmiD~~Qva~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasvm~~w~~ 709 (849)
T KOG0221|consen 631 FVPAEE-AEIGIVDRIFTRIHSCESVSLGQSTFMIDLNQVAKALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWLA 709 (849)
T ss_pred ccchhh-hhcchHHHHHHHhhhhhhhhhhhhHHHHhHHHHHHHHHHhhcCcEEEEhhccCCccccccHHHHHHHHHHHHh
Confidence 999997 8999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCc---EEEEEecchhHHhhh--cccccccCCcee---ecccccccchhcccCCCCCchHHHHHHHcCCCHHHHHHHHHH
Q 003258 463 RVG---LAVVTTHYADLSCLK--DKDTRFENAATE---FSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKL 534 (835)
Q Consensus 463 ~~~---~viitTH~~el~~~~--~~~~~~~n~~v~---~~~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~~~~ii~~A~~~ 534 (835)
+|. +|+++||++++..+- ...+...--.|. .+.+.+.++|++..|....|+|+.+|+..|+|++++.||++.
T Consensus 710 rg~~~PrifvcThfheL~ne~~L~~n~i~qfltm~vlr~~ge~I~flyrv~~gl~k~sfal~~ak~~glp~~vV~Ra~~v 789 (849)
T KOG0221|consen 710 RGPTCPRIFVCTHFHELVNEQLLPQNPIVQFLTMEVLREDGEDIVFLYRVCEGLAKASFALHTAKQAGLPDKVVARAKEV 789 (849)
T ss_pred cCCCCCeEEEeccHHHhhhhccCCcchhhhhhhHHHHHhccCCeEEEEEeccchhhhcccchhHhhcCCCHHHHHHHHHH
Confidence 764 599999999976421 111111111111 245688999999999999999999999999999999999998
Q ss_pred HHhh
Q 003258 535 VERL 538 (835)
Q Consensus 535 ~~~~ 538 (835)
....
T Consensus 790 ~~ai 793 (849)
T KOG0221|consen 790 SDAI 793 (849)
T ss_pred HHHH
Confidence 7654
No 10
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=3.1e-42 Score=399.65 Aligned_cols=491 Identities=19% Similarity=0.228 Sum_probs=376.0
Q ss_pred CchHHHhhcCCCCCCCHHHHHHHHHHHHHHHH--HHh-cCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 003258 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--MMQ-SQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (835)
Q Consensus 1 mG~~~l~~~~l~p~~~~~~i~~~l~~~~e~~~--~~~-~~~~~l~~~~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~ 77 (835)
+|+|+++.|..+|+.+...|..+++.+.-... ... .-.-.|..+||++++|.|+-.++.-...++.+..+.|...+.
T Consensus 574 fGKRllk~Wl~~Pl~~~~~I~~R~dav~~l~~~~~~~~~~~e~l~klPDlERlL~Rih~~~~~~~k~i~~f~rvLegfk~ 653 (1125)
T KOG0217|consen 574 FGKRLLKTWLMAPLCDKEDIKQRQDAVDSLGKAPMDRTKVGETLKKLPDLERLLVRIHNGGEKNKKKIADFIRVLEGFKE 653 (1125)
T ss_pred HHHHHHHHHhhCcCCCHHHHHHHHHHHHHHhcCchhHHHHHHHHhhCCcHHHHHHHHHhcCccchhHHHHHHHHHHHHHH
Confidence 59999999999999999999999998887766 111 223368899999999999988776457778888888887777
Q ss_pred HHHHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhcc-----CCCcccC--CcCHHHHHHHHHHHHHHHHHH
Q 003258 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDC-----KLLIILD--RASEDLELIRAERKRNMENLD 150 (835)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~i~~~id~-----~~~~i~d--~aS~~L~~lR~~~~~~~~~l~ 150 (835)
+...+........ .......|..++.+++.+..-......+++. ++ .|-+ +++.++++.-+.++.+.+.|.
T Consensus 654 ~~~~~~~~~~v~~-~~~~~~~is~~~~~~p~~~~~i~~~~~af~r~~a~~eg-~i~P~~Gfd~eyD~a~k~~~e~e~~L~ 731 (1125)
T KOG0217|consen 654 INKLLGSLINVLK-EGEGLRLISELLESMPNLSEEIENWTEAFDRVKAVKEG-VIVPLEGFDEEYDEAMKRVDEAENELL 731 (1125)
T ss_pred HHHHHHHHHHHHH-hhHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcC-ccCCCccccHHHHHHhhHHHHHHHHHH
Confidence 7666543221000 0001122333333433333323333344443 32 3444 578999999998888888888
Q ss_pred HHHHHHHHHHHHhcCCCCcceeecc---CcEEEEEecccccCCCCcEEEEEccCCcEEEeccchhhhhhHHHHHHhH-HH
Q 003258 151 SLLKKVAAQIFQAGGIDKPLITKRR---SRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSN-SE 226 (835)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~i~~r~---~r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~iep~~~v~lnn~~~~l~~-~e 226 (835)
.+|..+..++ ....|.+++ +.|.+.|+.+....++..++.-.+..|...|+.|. +...+..+.. ++
T Consensus 732 ~~L~~~rk~l------~c~si~~~~vGk~~y~lEvP~n~~~~s~~~~~~~S~~Kg~~RY~tp~----~~kli~~l~~aee 801 (1125)
T KOG0217|consen 732 AYLEEYRKRL------GCSSIVFVDVGKDVYQLEVPENGGVPSSLRYELMSAKKGVSRYYTPD----LRKLIAHLDEAEE 801 (1125)
T ss_pred HHHHHHHHhc------CCCceeEeecCceEEEEecCcccCCCCchHHHHHHhhcCcccccCHH----HHHHHHHHHHHHH
Confidence 8887765432 233344433 47999999887776664566667788999999995 3333333322 11
Q ss_pred H--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CccccccCCCCCCCcceeeEccccCCcccc
Q 003258 227 I--AEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMD--GVCPILSSQSHVSFDSSINIEGIKHPLLLG 302 (835)
Q Consensus 227 ~--~ee~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~--~~~P~~~~~~~~~~~~~i~l~~~rHPll~~ 302 (835)
+ .-...+.+.+......+....+.....++.||+++++|.+|.-++ .|+|.+.++.. ..+.+.+.+.|||.+..
T Consensus 802 ~~~~~~~d~~~r~~~~f~~~~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~~d--t~~~l~~~~~~Hpcfsl 879 (1125)
T KOG0217|consen 802 RKKSSLSDLKRRLIVRFDEHYIIWQATVKALASIDCLLSLAETSKGLGGPMCRPEIVESTD--TPGFLIVKGLRHPCFSL 879 (1125)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccceeecccC--CCceeEEecccCceeec
Confidence 1 122356777777888888888999999999999999999998876 69999877542 22368999999999853
Q ss_pred ccccccccccCCCCCCCCCCCCCeEEEeeeeeecCCceeccceeec-CCc-eEEEEEcCCCCChhhHHhhHHhhhhhccc
Q 003258 303 SSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVE-CET-RVVVITGPNTGGKTASMKTLGLASLMSKA 380 (835)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~g~~~l~~~~ls~~y~~~~v~isl~l~-~g~-~~~~I~GpNGsGKSTlLK~iGli~~ma~~ 380 (835)
... ++.++|+++.+. .+. .+.++|||||+|||||||++++.++|||+
T Consensus 880 ~s~-------------------------------~~~fipN~v~~g~~~e~~~~llTGpNmgGKSTllRq~c~~vilaq~ 928 (1125)
T KOG0217|consen 880 PST-------------------------------GTSFIPNDVELGGAEENREGLLTGPNMGGKSTLLRQACIAVILAQI 928 (1125)
T ss_pred CcC-------------------------------CCccccchhhccccccceeeeeccCCcCCchHHHHHHHHHHHHHHh
Confidence 211 013678888887 222 45559999999999999999999999999
Q ss_pred ceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHH
Q 003258 381 GLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460 (835)
Q Consensus 381 G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l 460 (835)
|++||+.. ..++.+|+||+++|..+.+-.+.|||..+....+.|+..+++.+||++||.++||...+|.+|+.+++++|
T Consensus 929 G~~VPa~~-~~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~~aT~~SLvi~DELGRGtst~DG~aIA~aVLe~l 1007 (1125)
T KOG0217|consen 929 GCDVPAEV-MELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILKHATRHSLVIVDELGRGTSTFDGTAIAEAVLEHL 1007 (1125)
T ss_pred CCCccHHH-hcccchHHHhhhcccccchhcCCceEEEeccchHHHHhhcCccceeeehhhcCcccccCCcchHHHHHHHH
Confidence 99999996 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc-CCcEEEEEecchhHHhhhcccccccCCcee--ecccc-cccchhcccCCCCCchHHHHHHHcCCCHHHHHHHHHHHH
Q 003258 461 RD-RVGLAVVTTHYADLSCLKDKDTRFENAATE--FSLET-LRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVE 536 (835)
Q Consensus 461 ~~-~~~~viitTH~~el~~~~~~~~~~~n~~v~--~~~~~-l~~~Y~l~~g~~~~s~a~~ia~~~g~~~~ii~~A~~~~~ 536 (835)
.. ..+..+++|||+.+.....+.+.+..++|. .+.+. +.++|++..|.+++||++.+|+..|+|..|+++|.....
T Consensus 1008 ~~~i~c~~fFSTHYhsl~~~~~~~p~Vrl~~Ma~~vd~e~~vtFLYkl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~ 1087 (1125)
T KOG0217|consen 1008 SEGIQCLGFFSTHYHSLCVDFMHHPQVRLLHMACVVDEEIDVTFLYKLEEGICPKSYGFNVARMAGLPDQVIDRAEIKAH 1087 (1125)
T ss_pred HhcccccCCccccccchhHhhhcCccccchhheeeecCCccEEEeehhccCCCCcchhHHHHHhcCCcHHHHHHHHHHHH
Confidence 98 477899999999988777777777777664 44454 899999999999999999999999999999999988665
Q ss_pred h
Q 003258 537 R 537 (835)
Q Consensus 537 ~ 537 (835)
.
T Consensus 1088 E 1088 (1125)
T KOG0217|consen 1088 E 1088 (1125)
T ss_pred H
Confidence 3
No 11
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=2.4e-41 Score=379.82 Aligned_cols=481 Identities=19% Similarity=0.281 Sum_probs=375.0
Q ss_pred CchHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH---hcCCCCCCCCcCHHHHHHHHh-c---CCCCC----HHHHHHHH
Q 003258 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMM---QSQPLDLSTIEDIAGILNSAV-S---GQLLS----PSEICAVR 69 (835)
Q Consensus 1 mG~~~l~~~~l~p~~~~~~i~~~l~~~~e~~~~~---~~~~~~l~~~~Di~~~l~r~~-~---g~~l~----~~el~~i~ 69 (835)
||.+.+|+-.++|++|...+..+|+.+.|..+=- ..+.+.++.++|+..++..+. . ..+-. ..-+..+.
T Consensus 294 ~g~r~lRssilqpl~d~~ti~~rleaiqeL~a~~~L~~~Lr~~~k~~~dld~~~s~~~~~~~~~~i~~~~s~I~~~~~Lk 373 (867)
T KOG0220|consen 294 GGYRRLRSSILQPLTDIETINMRLEAIQELLADEELFFGLRSVIKRFLDLDQLLSVLVQIPTQDTVNAAESKINNLIYLK 373 (867)
T ss_pred cchhhHHhhhcccccchhhhhHHHHHHHHHhcCchHhhhhHHHHhhhhhHHHHHHHHHhhhhHHhhhcchhHHHHHHHHH
Confidence 6899999999999999999999999888876522 256778889999988777652 1 11111 12356677
Q ss_pred HHHHHHHHHHHHHHHhhhccCCcccccchHHHHHhcC--CChHHHHHHHhhhhccCC--------------CcccCCcCH
Q 003258 70 RTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNC--NFLTELEEKIGFCIDCKL--------------LIILDRASE 133 (835)
Q Consensus 70 ~~l~~~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~l--~~~~~l~~~i~~~id~~~--------------~~i~d~aS~ 133 (835)
.+|....-++..+.... .+.+.++...+ .-+..+.+.|..+|+++. ..|+.+..-
T Consensus 374 ~tL~lv~~~~~al~~~~---------s~~~~e~~~~~~~~r~~~i~~~i~e~I~dd~l~a~~~l~~~~qkcyAvks~i~~ 444 (867)
T KOG0220|consen 374 HTLELVDPLKIALKNCN---------SNLLREYYGSFKDKRFGIILEKIKEVINDDALYAKGCLNLRTQKCYAVKSNING 444 (867)
T ss_pred HHHHHHHHHHHHHhhch---------hHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHhccchhhhhccceeeecccccH
Confidence 77777777777664321 23444444443 336778888999998753 136666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeccC-cEEEEEecc----cccCCCCcEEEEEccCCcEEEec
Q 003258 134 DLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRS-RMCVGIKAS----HKYLLPDGIALNVSSSGATYFME 208 (835)
Q Consensus 134 ~L~~lR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~r~~-r~vi~v~~~----~~~~~~~g~v~~~s~sg~t~~ie 208 (835)
-|+--|+-..++.......++++..++ .+ .....+.+- ||++-++.. ....+| ..+.+.+.-..++-..
T Consensus 445 ~LDiaR~ty~ei~~~~~~~i~~l~E~~----~~-nl~~~f~sarGF~~ri~~~~~~~~~~~lP-~~fi~~~~~~~~~~~~ 518 (867)
T KOG0220|consen 445 FLDIARRTYTEIVDDIAGMISQLGEKF----SL-NLRLSFSSARGFFIRITTDCIALPSDTLP-SEFIKISKVKNSYSFT 518 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc----Cc-cccccccccccEEEEeeccccccccccCc-hhhhhhhhhcceeeec
Confidence 788888776665544444555544332 11 222223333 577776654 244566 3444444444444455
Q ss_pred cchhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCCCcc
Q 003258 209 PKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDS 288 (835)
Q Consensus 209 p~~~v~lnn~~~~l~~~e~~ee~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~ 288 (835)
...++.+|.++.+...++.-.-..++..|-..|..+...+..+.+++.-||+++++|......++++|++++
T Consensus 519 s~~~ik~N~Rlk~~~~E~~l~te~~v~~lld~i~~~I~~L~~iae~~~~lD~l~sfa~~~~~~~y~~P~fT~-------- 590 (867)
T KOG0220|consen 519 SADLIKMNERLKEVLREIFLMTEMIVCKLLDEIYEHISCLYKLAEAVSMLDMLCSFAHACTLSDYVRPEFTD-------- 590 (867)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--------
Confidence 667888898888777776666667999999999999999999999999999999999999999999999988
Q ss_pred eeeEccccCCccccccccccccccCCCCCCCCCCCCCeEEEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHH
Q 003258 289 SINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASM 368 (835)
Q Consensus 289 ~i~l~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlL 368 (835)
.+.|.+||||+|+...- ++++.++..+..+.++.+||||||+||||+|
T Consensus 591 slaI~qGRHPILe~i~~--------------------------------ek~i~N~t~~t~~s~f~IITGPNMsGKSTYL 638 (867)
T KOG0220|consen 591 SLAIKQGRHPILEKISA--------------------------------EKPIANNTYVTEGSNFLIITGPNMSGKSTYL 638 (867)
T ss_pred ceeeccCCCchhhhhcc--------------------------------cCcccCcceeecccceEEEECCCCCcchHHH
Confidence 48999999999964311 1366677777777799999999999999999
Q ss_pred hhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHh
Q 003258 369 KTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSE 448 (835)
Q Consensus 369 K~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~ 448 (835)
|+++++++|||+|+|+|+.- +.+++|++||+++|-.|++.++-|+|..+|+..+.++..+++.+||+|||.++||...+
T Consensus 639 KQvAl~~IMAQIGc~IPA~Y-aS~pIf~RIFtRmg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TStee 717 (867)
T KOG0220|consen 639 KQVALCQIMAQIGSYVPAEY-ASFRVFKRIFTRMGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRGTSTEE 717 (867)
T ss_pred HHHHHHHHHHHhccCcchhh-ccchHHHHHHHHhcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCcccc
Confidence 99999999999999999985 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeeccc--cccc-chhcccCC-CCCchHHHHHHHcCCC
Q 003258 449 GVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLE--TLRP-TYRILWGS-TGDSNALNIAKSIGFD 524 (835)
Q Consensus 449 ~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~~~--~l~~-~Y~l~~g~-~~~s~a~~ia~~~g~~ 524 (835)
|.++.+|+.+++.+-..+++++||+.++..++...+.+.|-++..+.. .... .|++..|. .+.-|++..++..-+|
T Consensus 718 GiaityAvCE~lL~LkayTflATHFldIa~lan~~paVdnlHF~~q~~eNssk~~k~kLsrg~~~~~~yG~~~vE~s~iP 797 (867)
T KOG0220|consen 718 GIAITYAVCEYLLSLKAYTFLATHFLDIAAIANYYPAVDNLHFLVQTDENSSKNKKYKLSRGLTEEKNYGLKAAEVSSLP 797 (867)
T ss_pred chhhHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcCccccceeeeeeecccchhhhhhhhhhhhhhcccccceEEEEecCC
Confidence 999999999999999999999999999999999999999987765432 2222 48888776 4567899999999999
Q ss_pred HHHHHHHHHHHHh
Q 003258 525 RKIIQRAQKLVER 537 (835)
Q Consensus 525 ~~ii~~A~~~~~~ 537 (835)
++|+..|+.+...
T Consensus 798 d~i~e~a~~~~t~ 810 (867)
T KOG0220|consen 798 DSIVEDAKEITTQ 810 (867)
T ss_pred HHHHHhhhHHHHH
Confidence 9999999887653
No 12
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=1.8e-40 Score=348.96 Aligned_cols=228 Identities=36% Similarity=0.637 Sum_probs=186.2
Q ss_pred CccccccCCCCCCCcceeeEccccCCccccccccccccccCCCCCCCCCCCCCeEEEeeeeeecCCceeccceeecCCc-
Q 003258 273 GVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECET- 351 (835)
Q Consensus 273 ~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~ls~~y~~~~v~isl~l~~g~- 351 (835)
||+|.|+++. .|.++++|||+|+.. +++ +..||+|+.+..+.
T Consensus 1 y~~P~~~~~~------~l~i~~~~HPll~~~-~~~------------------------------~~~v~ndi~~~~~~~ 43 (235)
T PF00488_consen 1 YCRPKISEEK------SLKIKEGRHPLLEEK-LEN------------------------------KKFVPNDIELSNNKS 43 (235)
T ss_dssp EB-EEEESTT------EEEEEEE--TTHHHH-TTT------------------------------SSC--EEEEESSSSS
T ss_pred CcccEEcCCC------CEEEEeccCCEEecc-ccC------------------------------CceecceeecCCCce
Confidence 6899999875 799999999999532 111 13679999998874
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcCC
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR 431 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~~ 431 (835)
++++|||||+|||||+||+||++++|||+|+|||++. +.+++||+|+++++..|++..+.|+|..+|++++.++..+++
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~-~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~ 122 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAES-AEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATE 122 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSE-EEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--T
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecc-cccccccEEEeecccccccccccccHHHhHHHHHhhhhhccc
Confidence 6999999999999999999999999999999999996 899999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCceeec--ccccccchhcccCC
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS--LETLRPTYRILWGS 508 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~el~~~~~~~~~~~n~~v~~~--~~~l~~~Y~l~~g~ 508 (835)
.+|||+||+++||+|.+|.+++.+++++|.+ .++.+|++||++++..+......+.+.++.+. .+.+.++|++..|.
T Consensus 123 ~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~f~Ykl~~G~ 202 (235)
T PF00488_consen 123 KSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAELLERNPNVQNYHMEVEEDNDSLTFTYKLKEGI 202 (235)
T ss_dssp TEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEES-
T ss_pred ceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHHhhhCccccccceeeeeeccccceeEEEeECC
Confidence 9999999999999999999999999999998 58999999999999887776666666666654 45788999999999
Q ss_pred CCCchHHHHHHHcCCCHHHHHHHHHHHHhh
Q 003258 509 TGDSNALNIAKSIGFDRKIIQRAQKLVERL 538 (835)
Q Consensus 509 ~~~s~a~~ia~~~g~~~~ii~~A~~~~~~~ 538 (835)
+..|+|+.+|+.+|+|++++++|++.+..+
T Consensus 203 ~~~S~ai~iA~~~g~p~~II~rA~~i~~~l 232 (235)
T PF00488_consen 203 CSSSYAIEIAKLAGLPEEIIERAKEILKQL 232 (235)
T ss_dssp -SSTCHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999988653
No 13
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=4e-37 Score=321.34 Aligned_cols=196 Identities=29% Similarity=0.512 Sum_probs=178.1
Q ss_pred eeccceee--cCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchH
Q 003258 340 PVPIDIKV--ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG 417 (835)
Q Consensus 340 ~v~isl~l--~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSg 417 (835)
+|++|+.+ .++ ++++|+|||||||||+|+++|++++|+|+|+|+|+.. +.++.+++++..+|..+++.+++|+||.
T Consensus 18 ~v~~~~~~~~~~~-~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~-~~~~~~~~il~~~~l~d~~~~~lS~~~~ 95 (222)
T cd03285 18 FIPNDVTLTRGKS-RFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDS-ADIPIVDCILARVGASDSQLKGVSTFMA 95 (222)
T ss_pred eEEeeEEEeecCC-eEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCccc-EEEeccceeEeeeccccchhcCcChHHH
Confidence 55555544 456 8999999999999999999999999999999999986 7899999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCceeecc-
Q 003258 418 HISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFSL- 495 (835)
Q Consensus 418 g~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~el~~~~~~~~~~~n~~v~~~~- 495 (835)
++++++.++..+++|+||||||||+||++.++.++++++++++.+ .++++|++||+.++..+|++...+.++++.++.
T Consensus 96 e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 96 EMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 999998888778999999999999999999999999988899875 478999999998899999999999999987654
Q ss_pred ---cccccchhcccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHh
Q 003258 496 ---ETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVER 537 (835)
Q Consensus 496 ---~~l~~~Y~l~~g~~~~s~a~~ia~~~g~~~~ii~~A~~~~~~ 537 (835)
+.+.|+|++..|+++.|||+.+|+..|+|++|+++|+++...
T Consensus 176 ~~~~~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~~ 220 (222)
T cd03285 176 DASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALE 220 (222)
T ss_pred CCCCcEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 678899999999999999999999999999999999998753
No 14
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=2e-37 Score=321.90 Aligned_cols=190 Identities=31% Similarity=0.518 Sum_probs=173.9
Q ss_pred eeccceee--cCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchH
Q 003258 340 PVPIDIKV--ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG 417 (835)
Q Consensus 340 ~v~isl~l--~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSg 417 (835)
+||+|+.+ .++ ++++|+||||+||||+|+++|++++|+|+|+|+|++. +.+++|++||++++..|++..+.|+|+.
T Consensus 18 ~v~ndi~l~~~~~-~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~-~~i~~~~~i~~~~~~~d~~~~~~StF~~ 95 (218)
T cd03286 18 FVPNDVDLGATSP-RILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKS-MRLSLVDRIFTRIGARDDIMKGESTFMV 95 (218)
T ss_pred eEEeeeEEeecCC-cEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccc-cEeccccEEEEecCcccccccCcchHHH
Confidence 66555555 456 8999999999999999999999999999999999996 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcC-CcEEEEEecchhHHhhhcccccccCCceeecc-
Q 003258 418 HISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFSL- 495 (835)
Q Consensus 418 g~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~-~~~viitTH~~el~~~~~~~~~~~n~~v~~~~- 495 (835)
+|++++.++..+++|+|+|||||++||||.++.+|+++++++|.+. ++++|++|||+++.........+.+.+|.++.
T Consensus 96 e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~~~~~v~~~~m~~~~~ 175 (218)
T cd03286 96 ELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHEHGGVRLGHMACAVK 175 (218)
T ss_pred HHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhhcCcceEEEEEEEEEe
Confidence 9999999999999999999999999999999999999999999986 89999999999987766555667777777643
Q ss_pred -------cccccchhcccCCCCCchHHHHHHHcCCCHHHHHHH
Q 003258 496 -------ETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRA 531 (835)
Q Consensus 496 -------~~l~~~Y~l~~g~~~~s~a~~ia~~~g~~~~ii~~A 531 (835)
+++.|+|++..|+++.|||+.+|+++|+|++|+++|
T Consensus 176 ~~~~~~~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 176 NESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred ccccCCCCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 578999999999999999999999999999999876
No 15
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=100.00 E-value=6.8e-37 Score=314.94 Aligned_cols=184 Identities=54% Similarity=0.839 Sum_probs=172.9
Q ss_pred eeccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHH
Q 003258 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 419 (835)
Q Consensus 340 ~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~ 419 (835)
++++||++..|.++++|+||||||||||||+||++.+|+++|+++|+.....+++|++++..++..+++...+|+||+||
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~ 96 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHM 96 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHHHH
Confidence 67999999998558999999999999999999999999999999999876788999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeecccccc
Q 003258 420 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLR 499 (835)
Q Consensus 420 ~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~~~~l~ 499 (835)
+++..+...+.+|+++|+|||++|||+.++..+...+++.+.+.+.++|++||+.++..++++...+.+|.+.++.+++.
T Consensus 97 ~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~~~~~ 176 (200)
T cd03280 97 KNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDPETLK 176 (200)
T ss_pred HHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEecCccc
Confidence 98877777789999999999999999999999988788888887899999999988989999999999999999999999
Q ss_pred cchhcccCCCCCchHHHHHHHcCC
Q 003258 500 PTYRILWGSTGDSNALNIAKSIGF 523 (835)
Q Consensus 500 ~~Y~l~~g~~~~s~a~~ia~~~g~ 523 (835)
++|++..|.++.|||+++|+++|+
T Consensus 177 ~~ykl~~G~~~~s~a~~~a~~~g~ 200 (200)
T cd03280 177 PTYRLLIGVPGRSNALEIARRLGL 200 (200)
T ss_pred EEEEEeECCCCCcHHHHHHHHcCC
Confidence 999999999999999999999985
No 16
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.1e-36 Score=317.13 Aligned_cols=188 Identities=31% Similarity=0.547 Sum_probs=170.8
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHH
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISR 421 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~r 421 (835)
++++.+..| ++++|+||||+||||+||++|++.+|+++|+++|+.. +.+++|++|+++++..|++..+.|+|+.+|++
T Consensus 23 ~i~~~~~~g-~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~-~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~ 100 (222)
T cd03287 23 DIHLSAEGG-YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASS-ATLSIFDSVLTRMGASDSIQHGMSTFMVELSE 100 (222)
T ss_pred eEEEEecCC-cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCc-eEEeccceEEEEecCccccccccchHHHHHHH
Confidence 556666677 8999999999999999999999999999999999986 89999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcC-CcEEEEEecchhHHhhhccc-ccccCCceeec-----
Q 003258 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKD-TRFENAATEFS----- 494 (835)
Q Consensus 422 l~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~-~~~viitTH~~el~~~~~~~-~~~~n~~v~~~----- 494 (835)
++.++..+++++|+|||||++|||+.++.+++.++++++.+. ++++|++||++++..+.... ..+.+.++.++
T Consensus 101 ~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~~~~~~~v~~~~~~~~~~~~~ 180 (222)
T cd03287 101 TSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEILRRFEGSIRNYHMSYLESQKD 180 (222)
T ss_pred HHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHHHhcccCeEEEEEEEEEeccc
Confidence 999999999999999999999999999999999999999987 88999999999988877542 23566666643
Q ss_pred -----ccccccchhcccCCCCCchHHHHHHHcCCCHHHHHHH
Q 003258 495 -----LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRA 531 (835)
Q Consensus 495 -----~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~~~~ii~~A 531 (835)
.+.+.|+|++.+|+++.|||+.+|++.|+|++|+++|
T Consensus 181 ~~~~~~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 181 FETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred cccccCCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 2468899999999999999999999999999999876
No 17
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=2.7e-35 Score=306.44 Aligned_cols=194 Identities=29% Similarity=0.507 Sum_probs=180.5
Q ss_pred eeccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHH
Q 003258 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 419 (835)
Q Consensus 340 ~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~ 419 (835)
+|++|+.+..+.++++|+||||||||||||++|++.+|+++|+++|+.. ..++++++++..++..+++....|+|..++
T Consensus 19 ~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~-~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~ 97 (216)
T cd03284 19 FVPNDTELDPERQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASK-AEIGVVDRIFTRIGASDDLAGGRSTFMVEM 97 (216)
T ss_pred eEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHHHHhccCCeecccc-ceecceeeEeccCCchhhhccCcchHHHHH
Confidence 5788888776558999999999999999999999999999999999986 789999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcC-CcEEEEEecchhHHhhhcccccccCCceeec--cc
Q 003258 420 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFS--LE 496 (835)
Q Consensus 420 ~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~-~~~viitTH~~el~~~~~~~~~~~n~~v~~~--~~ 496 (835)
.++..++..+++|+|+|||||++||++.++.++..++++++.+. ++++|++||+.++..+++....+.++++.++ .+
T Consensus 98 ~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~ 177 (216)
T cd03284 98 VETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGG 177 (216)
T ss_pred HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCC
Confidence 99999999999999999999999999999999988899999887 8999999999999999999888999988874 56
Q ss_pred ccccchhcccCCCCCchHHHHHHHcCCCHHHHHHHHHH
Q 003258 497 TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKL 534 (835)
Q Consensus 497 ~l~~~Y~l~~g~~~~s~a~~ia~~~g~~~~ii~~A~~~ 534 (835)
.+.++|++..|.++.|||+.+|++.|+|++++++|+++
T Consensus 178 ~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~ 215 (216)
T cd03284 178 GVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREI 215 (216)
T ss_pred eEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHh
Confidence 78999999999999999999999999999999999875
No 18
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.2e-34 Score=301.02 Aligned_cols=183 Identities=29% Similarity=0.459 Sum_probs=165.8
Q ss_pred eeccceeecCCc-eEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHH
Q 003258 340 PVPIDIKVECET-RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH 418 (835)
Q Consensus 340 ~v~isl~l~~g~-~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg 418 (835)
+||+|+.++.+. ++++|+||||+|||||||++|++.+|+++|+++|+.. +.+++|++++..++..+++....|+|+.+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~-~~~~~~d~i~~~l~~~~si~~~~S~f~~e 95 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADS-ATIGLVDKIFTRMSSRESVSSGQSAFMID 95 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCC-cEEeeeeeeeeeeCCccChhhccchHHHH
Confidence 789999998774 8999999999999999999999999999999999986 89999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcC---CcEEEEEecchhHHhhhc--ccccccCCceee
Q 003258 419 ISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR---VGLAVVTTHYADLSCLKD--KDTRFENAATEF 493 (835)
Q Consensus 419 ~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~---~~~viitTH~~el~~~~~--~~~~~~n~~v~~ 493 (835)
|++++.++.++.+++|+|||||++||||.++.+++.++++++.+. +.++|++|||.++..... ....+.+.+|.+
T Consensus 96 l~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~~~~~~~~~~~~~~~ 175 (213)
T cd03281 96 LYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSLLPERLKIKFLTMEV 175 (213)
T ss_pred HHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhhhccCCceEEEEEEE
Confidence 999999999999999999999999999999999999899999765 358999999999776554 445667777765
Q ss_pred --c------ccccccchhcccCCCCCchHHHHHHHcCC
Q 003258 494 --S------LETLRPTYRILWGSTGDSNALNIAKSIGF 523 (835)
Q Consensus 494 --~------~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~ 523 (835)
+ .+.+.|+|++.+|+++.|||+.+|++.|+
T Consensus 176 ~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~a~~~g~ 213 (213)
T cd03281 176 LLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred EEcCCccCCCCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence 3 25789999999999999999999999985
No 19
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.6e-34 Score=297.71 Aligned_cols=179 Identities=27% Similarity=0.523 Sum_probs=162.9
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHH
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISR 421 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~r 421 (835)
++++....| ++++|+||||+||||+||+++.+++|+++|+|+|+.. +.+++|++++..++..+++.++.|+||+||++
T Consensus 21 ~~~~~~~~~-~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~-~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~ 98 (204)
T cd03282 21 DIYLTRGSS-RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEY-ATLPIFNRLLSRLSNDDSMERNLSTFASEMSE 98 (204)
T ss_pred eeEEeeCCC-cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhh-cCccChhheeEecCCccccchhhhHHHHHHHH
Confidence 566666777 8999999999999999999999999999999999986 79999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeecc---ccc
Q 003258 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSL---ETL 498 (835)
Q Consensus 422 l~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~~---~~l 498 (835)
+..+..++++|+|+|||||++||||.++.++..++++++.+.++++|++||+.++..+......+.+.++.++. +.+
T Consensus 99 ~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 178 (204)
T cd03282 99 TAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGNKSCVVHLHMKAQSINSNGI 178 (204)
T ss_pred HHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhcCCCeEEEEEEEEEcCCCce
Confidence 99999999999999999999999999999999999999999899999999999988777665556666665542 678
Q ss_pred ccchhcccCCCC-CchHHHHHHHcC
Q 003258 499 RPTYRILWGSTG-DSNALNIAKSIG 522 (835)
Q Consensus 499 ~~~Y~l~~g~~~-~s~a~~ia~~~g 522 (835)
.++|++..|.+. .|||+.+|+.+.
T Consensus 179 ~~~ykl~~G~~~~~~~g~~~a~~~~ 203 (204)
T cd03282 179 EMAYKLVLGLYRIVDDGIRFVRVLA 203 (204)
T ss_pred eeEEEEeeCCCCCCccHHHHHHHhh
Confidence 899999999999 999999999864
No 20
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=2.8e-34 Score=292.06 Aligned_cols=181 Identities=38% Similarity=0.656 Sum_probs=169.3
Q ss_pred EEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcCCC
Q 003258 353 VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRE 432 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~~~ 432 (835)
+++||||||||||||||++|++.+|+++|+|+|+.. +.++++++++..++..+++.++.|+||++|++++.++..+++|
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~-~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~ 79 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAES-AELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATEN 79 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehh-eEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCC
Confidence 478999999999999999999999999999999987 8999999999999999999999999999999999999889999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcC-CcEEEEEecchhHHhhhcccccccCCceeeccc--ccccchhcccCCC
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFSLE--TLRPTYRILWGST 509 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~-~~~viitTH~~el~~~~~~~~~~~n~~v~~~~~--~l~~~Y~l~~g~~ 509 (835)
+|+|+|||++||||.++..+..++++++.+. ++++|++||+.++..+++....+.+.++.++.+ .+.++|++..|.+
T Consensus 80 ~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~Y~l~~G~~ 159 (185)
T smart00534 80 SLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRNLHMSADEETENLTFLYKLTPGVA 159 (185)
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEecCceeEEEEEeECCC
Confidence 9999999999999999999999899998874 889999999999999998878888888876644 5889999999999
Q ss_pred CCchHHHHHHHcCCCHHHHHHHHHH
Q 003258 510 GDSNALNIAKSIGFDRKIIQRAQKL 534 (835)
Q Consensus 510 ~~s~a~~ia~~~g~~~~ii~~A~~~ 534 (835)
+.|||+.+|+..|+|++++++|++.
T Consensus 160 ~~s~a~~~a~~~g~~~~i~~~a~~~ 184 (185)
T smart00534 160 GKSYGIEVAKLAGLPKEVIERAKEI 184 (185)
T ss_pred CCcHHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999999999999999874
No 21
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=1.4e-32 Score=300.23 Aligned_cols=284 Identities=19% Similarity=0.190 Sum_probs=234.1
Q ss_pred CchHHHhhcCCCCCCCHHHHHHHHHHHHHHHH--HH-hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 003258 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--MM-QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (835)
Q Consensus 1 mG~~~l~~~~l~p~~~~~~i~~~l~~~~e~~~--~~-~~~~~~l~~~~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~ 77 (835)
||+++|++|+++|++|.++|+++++.++++.. .+ .....+|++++|+++++.++..|. +++.||..+..++..+..
T Consensus 15 ~G~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~~~~l~~~l~~~L~~~~Di~~~l~~~~~~~-~~~~el~~l~~~l~~~~~ 93 (308)
T smart00533 15 MGKRLLRRWLLQPLLDLKEINERLDAVEELVENPELRQKLRQLLKRIPDLERLLSRIERGR-ASPRDLLRLYDSLEGLKE 93 (308)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCcHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999998 34 344458999999999999998875 699999999999999999
Q ss_pred HHHHHHHhhhccCCcccccchHH-HH----HhcCCChHHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHHHHHHHHH
Q 003258 78 VWKKLTEAAELDGDSLQRYSPLL-EL----LKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSL 152 (835)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~-~l----~~~l~~~~~l~~~i~~~id~~~~~i~d~aS~~L~~lR~~~~~~~~~l~~~ 152 (835)
++++|..... ..+.++. .+ ...+..+.++...+..+++.+.+.|+|+||++|+.||++++++...+++.
T Consensus 94 l~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~s~~Ld~lr~~~~~l~~~l~~~ 167 (308)
T smart00533 94 IRQLLESLDG------PLLGLLLKVILEPLLELLELLLELLNDDDPLEVNDGGLIKDGFDPELDELREKLEELEEELEEL 167 (308)
T ss_pred HHHHHHhcCc------HHHHHHHHhhccchHHHHHHHHHHhccCCcccccCCCeeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999864311 0011222 11 11122233444444455555546899999999999999999988888888
Q ss_pred HHHHHHHHHHhcCCCCcceeeccCcEEEEEecccccCCCCcEEEEEccCCcEEEeccchhhhhhHHHHHHhHHHHHHHHH
Q 003258 153 LKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETA 232 (835)
Q Consensus 153 l~~~~~~~~~~~~~~~~~i~~r~~r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~iep~~~v~lnn~~~~l~~~e~~ee~~ 232 (835)
+.+...+. ....++..+++.++ |||+|+.++...+| |.+++.|++|.++|++|..++++|+++.++..++..++.+
T Consensus 168 ~~~~~~~~-~~~~l~~~~~~~~g--~~i~v~~~~~~~~~-~~~~~~s~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 243 (308)
T smart00533 168 LKKEREEL-GIDSLKLGYNKVHG--YYIEVTKSEAKKVP-KDFIRRSSLKNTERFTTPELKELENELLEAKEEIERLEKE 243 (308)
T ss_pred HHHHHHHh-CCCceEEeEeccEE--EEEEecchhhccCC-hHHHHHhhhcccceeeCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87765431 11223334444443 99999999999998 7889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCCCcceeeEccccCCccc
Q 003258 233 ILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLL 301 (835)
Q Consensus 233 il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~ 301 (835)
|+++|+..+.++.+.+..+.++++.||+++|+|.+|.+++||+|.|++++ .|.++++|||+++
T Consensus 244 i~~~l~~~i~~~~~~l~~~~~~i~~lD~l~s~a~~a~~~~~~~P~i~~~~------~l~i~~~rHPlle 306 (308)
T smart00533 244 ILRELLEKVLEYLEELRALAEALAELDVLLSLATLAAEGNYVRPEFVDSG------ELEIKNGRHPVLE 306 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCeeCCCC------CEEEeeCCCCccc
Confidence 99999999999999999999999999999999999999999999998864 6999999999984
No 22
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=100.00 E-value=2.4e-33 Score=289.01 Aligned_cols=182 Identities=35% Similarity=0.584 Sum_probs=170.2
Q ss_pred eeccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHH
Q 003258 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 419 (835)
Q Consensus 340 ~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~ 419 (835)
++|+|+++..| ++++|+||||||||||||+|+...+++++|.++|+.. ..++++++++..++..+++...+|+|+.++
T Consensus 19 ~~~~~~~l~~~-~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~-~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~ 96 (202)
T cd03243 19 FVPNDINLGSG-RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAES-ASIPLVDRIFTRIGAEDSISDGRSTFMAEL 96 (202)
T ss_pred eEeeeEEEcCC-eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccc-cccCCcCEEEEEecCcccccCCceeHHHHH
Confidence 67999999999 9999999999999999999998889999999999986 789999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeeccc--c
Q 003258 420 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLE--T 497 (835)
Q Consensus 420 ~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~~~--~ 497 (835)
+++..++.++.+|+++|||||++||||.++..+.+.+++.+.+.++++|++||+.++...++....+.++++..+.+ .
T Consensus 97 ~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 97 LELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCe
Confidence 99999999999999999999999999999999988888988888899999999999888888888888888887654 6
Q ss_pred cccchhcccCCCCCchHHHHHHHcCC
Q 003258 498 LRPTYRILWGSTGDSNALNIAKSIGF 523 (835)
Q Consensus 498 l~~~Y~l~~g~~~~s~a~~ia~~~g~ 523 (835)
+.++|++..|.+.+|+|+.+|+++|+
T Consensus 177 ~~~~ykl~~g~~~~~~a~~~~~~~g~ 202 (202)
T cd03243 177 LTFTYKLIDGICDPSYALQIAELAGL 202 (202)
T ss_pred eeEEEEEeECCCCCcHHHHHHHHcCC
Confidence 88999999999999999999999985
No 23
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.97 E-value=9.7e-31 Score=268.94 Aligned_cols=181 Identities=29% Similarity=0.439 Sum_probs=158.5
Q ss_pred eeccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHH
Q 003258 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 419 (835)
Q Consensus 340 ~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~ 419 (835)
+|++|+++..| ++++|+||||||||||||+|+...+++++|.++|+.. ..++ ++.+|..+...+++....|.|..++
T Consensus 15 ~v~n~i~l~~g-~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~-~~~q-~~~l~~~~~~~d~l~~~~s~~~~e~ 91 (199)
T cd03283 15 RVANDIDMEKK-NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASS-FELP-PVKIFTSIRVSDDLRDGISYFYAEL 91 (199)
T ss_pred eecceEEEcCC-cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCc-cCcc-cceEEEeccchhccccccChHHHHH
Confidence 67899999999 9999999999999999999998889999999999975 6676 6788888888888888889888888
Q ss_pred HHHHHHHHHcC--CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCce--eecc
Q 003258 420 SRIVDILELVS--RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT--EFSL 495 (835)
Q Consensus 420 ~rl~~~~~la~--~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v--~~~~ 495 (835)
+++..++..+. +|+++|||||++|||+.++..+..++++.+.+.+.++|++||++++.........+.+.++ .++.
T Consensus 92 ~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~~~~~~~~~ 171 (199)
T cd03283 92 RRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNYHFREDIDD 171 (199)
T ss_pred HHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEEEEEEEEEC
Confidence 89999988888 9999999999999999999998887888888778999999999997776655555555433 3455
Q ss_pred cccccchhcccCCCCCchHHHHHHHcCC
Q 003258 496 ETLRPTYRILWGSTGDSNALNIAKSIGF 523 (835)
Q Consensus 496 ~~l~~~Y~l~~g~~~~s~a~~ia~~~g~ 523 (835)
+.+.++|++.+|++..|+|+.+|++.|+
T Consensus 172 ~~~~~~y~~~~G~~~~s~~~~~a~~~g~ 199 (199)
T cd03283 172 NKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred CeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence 6788999999999999999999999985
No 24
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.1e-28 Score=290.85 Aligned_cols=169 Identities=22% Similarity=0.266 Sum_probs=134.7
Q ss_pred CCCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------cccceeecCCCC-
Q 003258 323 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------SKAGLYLPAKNH- 389 (835)
Q Consensus 323 g~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m---------a~~G~~vP~~~~- 389 (835)
|+.+|+++||++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.| |+|+...
T Consensus 309 ~~~~l~~~~l~~~y~~~~il~~isl~i~~G-e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig-y~~Q~~~~ 386 (638)
T PRK10636 309 PNPLLKMEKVSAGYGDRIILDSIKLNLVPG-SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLG-YFAQHQLE 386 (638)
T ss_pred CCceEEEEeeEEEeCCeeeeccceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEE-EecCcchh
Confidence 3468999999999988665 999999999 99999999999999999999 555321 1222 5555320
Q ss_pred ---CCchH---------------HHHHHHHcCCc-ccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhH
Q 003258 390 ---PRLPW---------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (835)
Q Consensus 390 ---~~i~~---------------~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~ 449 (835)
....+ +..++..+++. +..++++++|||||+ |++++++++.+|+||||||||+|||+...
T Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~ 466 (638)
T PRK10636 387 FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMR 466 (638)
T ss_pred hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 11111 22456667775 468899999999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeecccc
Q 003258 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLET 497 (835)
Q Consensus 450 ~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~~~~ 497 (835)
..|...+.++ ++|||+||||.+ +..+|++++.+.+|.+....++
T Consensus 467 ~~l~~~L~~~----~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~ 511 (638)
T PRK10636 467 QALTEALIDF----EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGD 511 (638)
T ss_pred HHHHHHHHHc----CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCC
Confidence 9999966654 469999999987 6679999999999988643333
No 25
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.96 E-value=4.1e-29 Score=262.56 Aligned_cols=167 Identities=21% Similarity=0.293 Sum_probs=143.8
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hccccee
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLY 383 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~~G~~ 383 (835)
+++++||+++|+++++ ++||++++| ++++|+||||||||||||++ |++.+ +|+.-.|
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G-~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKG-EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCC-cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 6889999999998887 999999999 99999999999999999999 55543 3556678
Q ss_pred ecCCCCCCch---------------------------HHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 384 LPAKNHPRLP---------------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 384 vP~~~~~~i~---------------------------~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
+||......+ .+++.+..+|..+..++.+++|||||+ |+.+|++++++|+++
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iL 160 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPIL 160 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEE
Confidence 8888522111 144568899999999999999999999 677789999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHh-cCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~-~~~~~viitTH~~el-~~~~~~~~~~~n~~v~~~ 494 (835)
||||||++||+.....+.+ ++..+. ++|.|+|+++||.++ ..|||+.+.+.+|.+...
T Consensus 161 LLDEPTs~LDi~~Q~evl~-ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~ 220 (258)
T COG1120 161 LLDEPTSHLDIAHQIEVLE-LLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQ 220 (258)
T ss_pred EeCCCccccCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEee
Confidence 9999999999999999999 666666 668999999999985 569999999999988765
No 26
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.9e-29 Score=261.49 Aligned_cols=162 Identities=23% Similarity=0.346 Sum_probs=137.9
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc---------ccceeec
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS---------KAGLYLP 385 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma---------~~G~~vP 385 (835)
.+++++|+++.|++.++ ++||++++| ++++|+||||||||||+|+| |++.+ .. ..-.|+|
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G-~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKG-EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 47899999999996445 999999999 99999999999999999998 76653 11 1245889
Q ss_pred CCCCC--Cch---------------------------HHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 386 AKNHP--RLP---------------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 386 ~~~~~--~i~---------------------------~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
|.... .+| -+++++..+|+.+..++.+++|||||+ |+.+|++++++|+|+
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~ll 161 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLL 161 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEE
Confidence 86421 111 155678999999999999999999999 899999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccC
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n 488 (835)
||||||+|+|+.....|.. ++..+++.|+|||++|||+. +..++|+++.+..
T Consensus 162 lLDEP~~gvD~~~~~~i~~-lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~ 214 (254)
T COG1121 162 LLDEPFTGVDVAGQKEIYD-LLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR 214 (254)
T ss_pred EecCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC
Confidence 9999999999999999999 88888888999999999987 7788998876543
No 27
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=9.1e-29 Score=248.86 Aligned_cols=166 Identities=23% Similarity=0.321 Sum_probs=139.3
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hh-------hhhhc--------------ccc
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GL-------ASLMS--------------KAG 381 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gl-------i~~ma--------------~~G 381 (835)
||+++||+|+||+..| ++|+++.+| ++++|+||+||||||||||| +| |.+-+ +.|
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~G-evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKG-EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCC-CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 7899999999998877 999999999 99999999999999999999 22 22211 222
Q ss_pred eeecCCCC--CCchHHH----------------------HHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEE
Q 003258 382 LYLPAKNH--PRLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (835)
Q Consensus 382 ~~vP~~~~--~~i~~~d----------------------~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlL 436 (835)
+|+|+.+ +.++..+ .++..+|+.+..+.+++.|||||+ |+++|++++.+|.++|
T Consensus 81 -mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmL 159 (240)
T COG1126 81 -MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVML 159 (240)
T ss_pred -eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEe
Confidence 4555531 2223322 358899999999999999999999 8999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccccCCceeec
Q 003258 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (835)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~-~~~~~~~~~~n~~v~~~ 494 (835)
+|||||.|||+-...+.. ++..|++.|.|.|++||++.++ .++|+++.+.+|.+...
T Consensus 160 FDEPTSALDPElv~EVL~-vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~ 217 (240)
T COG1126 160 FDEPTSALDPELVGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEE 217 (240)
T ss_pred ecCCcccCCHHHHHHHHH-HHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEe
Confidence 999999999999999998 7888999999999999999965 58999999999866543
No 28
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=2.9e-28 Score=281.47 Aligned_cols=307 Identities=19% Similarity=0.227 Sum_probs=204.1
Q ss_pred ccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeccCcEEEEEecccccCCCCcEEEEEccCCcEEE
Q 003258 127 ILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYF 206 (835)
Q Consensus 127 i~d~aS~~L~~lR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~r~~r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~ 206 (835)
+.|.=+..|+- ....||+++|+.+. ..+|.+.||||++.-.......+..|.+..+.+ |+..|
T Consensus 176 LLDEPTNHLD~------~~i~WLe~~L~~~~----------gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~G-ny~~~ 238 (530)
T COG0488 176 LLDEPTNHLDL------ESIEWLEDYLKRYP----------GTVIVVSHDRYFLDNVATHILELDRGKLTPYKG-NYSSY 238 (530)
T ss_pred EEcCCCcccCH------HHHHHHHHHHHhCC----------CcEEEEeCCHHHHHHHhhheEEecCCceeEecC-CHHHH
Confidence 44544444543 23679988887643 578999999999876666555555566666655 66666
Q ss_pred eccchhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCccccccCCCC
Q 003258 207 MEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLE---IDLAFARAGFAQWMDGVCPILSSQSH 283 (835)
Q Consensus 207 iep~~~v~lnn~~~~l~~~e~~ee~~il~~L~~~i~~~~~~l~~~~~~l~~---lD~l~a~a~~a~~~~~~~P~~~~~~~ 283 (835)
.+.. .+....+.++.+..++-++++..+|...........+.-++ ++-+.+... ..+|.-....
T Consensus 239 ~~~r------~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~------~~~~~~~~~~- 305 (530)
T COG0488 239 LEQK------AERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLA------EERPVEEGKP- 305 (530)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhh------hccccccccc-
Confidence 6552 22222222233334556677777777766555554333343 443333211 1122211110
Q ss_pred CCCcceeeEccccCCccccccccccccccCCCCCCCCCCCCCeEEEeeeeeecCCc-ee--ccceeecCCceEEEEEcCC
Q 003258 284 VSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPN 360 (835)
Q Consensus 284 ~~~~~~i~l~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~ls~~y~~~-~v--~isl~l~~g~~~~~I~GpN 360 (835)
..+.+...+++ .|+.++.++|++++|++. .+ ++||.+.+| +.++|+|||
T Consensus 306 ----~~~~f~~~~~~-----------------------~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g-~riaiiG~N 357 (530)
T COG0488 306 ----LAFRFPPPGKR-----------------------LGKLVLEFENVSKGYDGGRLLLKDLSFRIDRG-DRIAIVGPN 357 (530)
T ss_pred ----ceeeccCCccc-----------------------CCCeeEEEeccccccCCCceeecCceEEecCC-CEEEEECCC
Confidence 01233333331 134678899999999664 55 999999999 999999999
Q ss_pred CCChhhHHhhH-Hhhhhh---------cccceeecCCCCC---CchH---------------HHHHHHHcCCc-ccccCC
Q 003258 361 TGGKTASMKTL-GLASLM---------SKAGLYLPAKNHP---RLPW---------------FDLILADIGDH-QSLEQN 411 (835)
Q Consensus 361 GsGKSTlLK~i-Gli~~m---------a~~G~~vP~~~~~---~i~~---------------~d~i~~~ig~~-~~~~~~ 411 (835)
|+|||||||+| |.+... .+.| |.+|+... ...+ +...+.+++.. +...++
T Consensus 358 G~GKSTLlk~l~g~~~~~~G~v~~g~~v~ig-yf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~ 436 (530)
T COG0488 358 GAGKSTLLKLLAGELGPLSGTVKVGETVKIG-YFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKP 436 (530)
T ss_pred CCCHHHHHHHHhhhcccCCceEEeCCceEEE-EEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCc
Confidence 99999999999 444322 0122 33333210 0012 22345566654 456899
Q ss_pred cccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCC
Q 003258 412 LSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA 489 (835)
Q Consensus 412 lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~ 489 (835)
+.+|||||+ |+.+++.++.+|+|||||||||+||+.+..+|..++..| .+|||+||||.+ +..+|.+++.+.+
T Consensus 437 v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHDr~Fl~~va~~i~~~~~- 511 (530)
T COG0488 437 VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHDRYFLDRVATRIWLVED- 511 (530)
T ss_pred hhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcceEEEEcC-
Confidence 999999999 999999999999999999999999999999999988888 999999999998 6789999999988
Q ss_pred ceeecccc
Q 003258 490 ATEFSLET 497 (835)
Q Consensus 490 ~v~~~~~~ 497 (835)
.+....++
T Consensus 512 ~~~~~~g~ 519 (530)
T COG0488 512 KVEEFEGG 519 (530)
T ss_pred ceeEcCCC
Confidence 66555444
No 29
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=1.9e-28 Score=250.06 Aligned_cols=167 Identities=21% Similarity=0.306 Sum_probs=139.5
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-----------------------hc
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------------------MS 378 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-----------------------ma 378 (835)
..+++++|+++||++.| ++||++.+| ++++|+||+|+|||||||+| ||+.+ ..
T Consensus 7 ~~I~vr~v~~~fG~~~Ild~v~l~V~~G-ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 7 PLIEVRGVTKSFGDRVILDGVDLDVPRG-EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred ceEEEeeeeeecCCEEEecCceeeecCC-cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 47899999999999988 999999999 99999999999999999999 55432 11
Q ss_pred ccceeecCCC--CCCchHHHHH----------------------HHHcCCccc-ccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 379 KAGLYLPAKN--HPRLPWFDLI----------------------LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 379 ~~G~~vP~~~--~~~i~~~d~i----------------------~~~ig~~~~-~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
++| .++|.+ ...+++++++ +..+|+... .++.+|.|||||+ |+++|++++.+|
T Consensus 86 r~G-vlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdP 164 (263)
T COG1127 86 RMG-VLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDP 164 (263)
T ss_pred hee-EEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCC
Confidence 233 334443 1234445543 556788777 8999999999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+|+++||||+||||.....+.. ++..|.+ -+.|++++|||.+ +..+||++..+.++++.+.
T Consensus 165 ell~~DEPtsGLDPI~a~~~~~-LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~ 227 (263)
T COG1127 165 ELLFLDEPTSGLDPISAGVIDE-LIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE 227 (263)
T ss_pred CEEEecCCCCCCCcchHHHHHH-HHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEe
Confidence 9999999999999999998888 5555654 5889999999976 8889999999999999876
No 30
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.95 E-value=3.6e-26 Score=273.51 Aligned_cols=172 Identities=17% Similarity=0.203 Sum_probs=134.6
Q ss_pred CCCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------c---ccceeecCCCC-
Q 003258 323 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S---KAGLYLPAKNH- 389 (835)
Q Consensus 323 g~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------a---~~G~~vP~~~~- 389 (835)
|+.+++++||++.|+++++ ++||++.+| ++++|+||||||||||||+| |++.+- . .+| |+|+...
T Consensus 316 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~-y~~q~~~~ 393 (635)
T PRK11147 316 GKIVFEMENVNYQIDGKQLVKDFSAQVQRG-DKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVA-YFDQHRAE 393 (635)
T ss_pred CCceEEEeeeEEEECCeEEEcCcEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEE-EEeCcccc
Confidence 3468999999999988665 999999999 99999999999999999999 554321 1 122 4555321
Q ss_pred --CCchHHH-------------------HHHHHcCCc-ccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCH
Q 003258 390 --PRLPWFD-------------------LILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (835)
Q Consensus 390 --~~i~~~d-------------------~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp 446 (835)
..+++++ .++..++.. +..++++++|||||+ |++++++++.+|++|||||||+|||+
T Consensus 394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~ 473 (635)
T PRK11147 394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV 473 (635)
T ss_pred cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 1112222 234455664 457889999999999 89999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccccc-CCceeeccccccc
Q 003258 447 SEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE-NAATEFSLETLRP 500 (835)
Q Consensus 447 ~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~-n~~v~~~~~~l~~ 500 (835)
.....|...+.++ ++|+|++|||.+ +..+|++++.+. +|.+..+.+++..
T Consensus 474 ~~~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 474 ETLELLEELLDSY----QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred HHHHHHHHHHHhC----CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 9998888855443 579999999987 667999999997 7988777666553
No 31
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.1e-27 Score=243.38 Aligned_cols=163 Identities=23% Similarity=0.335 Sum_probs=137.5
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------cc-------cceeecCC
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SK-------AGLYLPAK 387 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a~-------~G~~vP~~ 387 (835)
.++.++++++.|++..+ ++||++.+| ++++|+||+|||||||||+| ||..+- ++ --.+++|+
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~G-EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~ 80 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKG-EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE 80 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc
Confidence 36789999999998666 999999999 99999999999999999999 454331 11 01244444
Q ss_pred CCCCchH------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCC
Q 003258 388 NHPRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (835)
Q Consensus 388 ~~~~i~~------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~ 442 (835)
. +-+|| ...+++.+|+.+..+++++.|||||+ |+++|++++.+|+++||||||+
T Consensus 81 ~-~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFg 159 (248)
T COG1116 81 D-ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFG 159 (248)
T ss_pred C-cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 3 33333 44568889999999999999999999 8999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCC
Q 003258 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA 489 (835)
Q Consensus 443 glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~ 489 (835)
.||...+..+.+.+++-+.+.+.|++++|||.+ -..++|+++.+.++
T Consensus 160 ALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 160 ALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999898888888999999999976 55688999888874
No 32
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=2.5e-27 Score=257.57 Aligned_cols=167 Identities=25% Similarity=0.349 Sum_probs=138.3
Q ss_pred eEEEeeeeeecC-Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------h------------cccce
Q 003258 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M------------SKAGL 382 (835)
Q Consensus 326 ~l~~~~ls~~y~-~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------m------------a~~G~ 382 (835)
++.+.||++.|+ ++.+ ++||++.+| ++++|+||||||||||||++ |++.+ . .+. .
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~G-ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~i-g 81 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPG-EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI-G 81 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhhe-E
Confidence 567899999999 5665 999999999 99999999999999999999 55532 1 122 3
Q ss_pred eecCCCC--CCch---------------------HHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEe
Q 003258 383 YLPAKNH--PRLP---------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (835)
Q Consensus 383 ~vP~~~~--~~i~---------------------~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLD 438 (835)
|+|+... ..++ .+++++..+|+.+..++.+++||+||+ |+.+|.+++.+|+|+|||
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLD 161 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILD 161 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 5666541 0111 245678888888766888999999999 899999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHHhcCC-cEEEEEecchh-HHhhhcccccccCCceeecc
Q 003258 439 EIGSGTDPSEGVALATSILQYLRDRV-GLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (835)
Q Consensus 439 Ep~~glDp~~~~aL~~all~~l~~~~-~~viitTH~~e-l~~~~~~~~~~~n~~v~~~~ 495 (835)
|||+||||..+..+.. ++..+.+.+ .|||+|||+++ +..+||++..+.+|.+.++.
T Consensus 162 EPt~GLDp~~~~~~~~-~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g 219 (293)
T COG1131 162 EPTSGLDPESRREIWE-LLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEG 219 (293)
T ss_pred CCCcCCCHHHHHHHHH-HHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeC
Confidence 9999999999999999 666666666 79999999986 77789999999999998864
No 33
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.7e-27 Score=235.11 Aligned_cols=159 Identities=18% Similarity=0.293 Sum_probs=135.7
Q ss_pred eEEEeeeeeecCCce--e-ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCC-----------
Q 003258 326 EMTVGSLSKGISDFP--V-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPR----------- 391 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~--v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~----------- 391 (835)
|+++.+++|+|++.+ + ++||+++.| ++++|.||||+||||+||+| .++..|.+|.+.
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~G-ei~GlLG~NGAGKTT~LRmi--------atlL~P~~G~v~idg~d~~~~p~ 71 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEG-EITGLLGENGAGKTTLLRMI--------ATLLIPDSGKVTIDGVDTVRDPS 71 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccc-eEEEEEcCCCCCchhHHHHH--------HHhccCCCceEEEeecccccChH
Confidence 788999999999854 2 999999999 99999999999999999999 444455444211
Q ss_pred ------------------ch------H---------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCC
Q 003258 392 ------------------LP------W---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 392 ------------------i~------~---------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~ 431 (835)
++ + .+++...+++.+.+++....||-||+ ++.+|++++++
T Consensus 72 ~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~ 151 (245)
T COG4555 72 FVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD 151 (245)
T ss_pred HHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcC
Confidence 11 1 12334566777889999999999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|++++|||||+|||......+.+ ++..+++.|.+|||+||.++ +..+||+++.+++|.+.+.
T Consensus 152 P~i~vlDEP~sGLDi~~~r~~~d-fi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~ 214 (245)
T COG4555 152 PSILVLDEPTSGLDIRTRRKFHD-FIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLE 214 (245)
T ss_pred CCeEEEcCCCCCccHHHHHHHHH-HHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEc
Confidence 99999999999999999999999 88888888999999999976 7889999999999998765
No 34
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.94 E-value=7.2e-27 Score=258.83 Aligned_cols=169 Identities=20% Similarity=0.266 Sum_probs=138.0
Q ss_pred CCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------h-----------cccce
Q 003258 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M-----------SKAGL 382 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------m-----------a~~G~ 382 (835)
..|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ . .+.-.
T Consensus 39 ~~~i~i~nl~k~y~~~~~l~~is~~i~~G-ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 117 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKAVVNGLSFTVASG-ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG 117 (340)
T ss_pred ceeEEEEEEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence 357999999999998755 999999999 99999999999999999999 55432 1 11123
Q ss_pred eecCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEe
Q 003258 383 YLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (835)
Q Consensus 383 ~vP~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLD 438 (835)
|+|+.... .+.+ ++.++..+|+.+..++.+++||+||+ |+.+|++++.+|+++|||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLD 197 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD 197 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 56665421 1222 12345667777778999999999999 899999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 439 Ep~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|||+||||..+..+.. ++..+.+.|.|||++||+++ +..+|+++..+.+|++.++
T Consensus 198 EPt~gLD~~~r~~l~~-~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~ 253 (340)
T PRK13536 198 EPTTGLDPHARHLIWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE 253 (340)
T ss_pred CCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999 45556666899999999987 6689999999999998765
No 35
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.94 E-value=8e-27 Score=255.37 Aligned_cols=168 Identities=20% Similarity=0.247 Sum_probs=137.4
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------------------ccccee
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLY 383 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------------------a~~G~~ 383 (835)
.|++++||+|.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.-.|
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~G-ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRG-ECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 48999999999987655 999999999 99999999999999999999 554321 111236
Q ss_pred ecCCCCC--CchHH---------------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeC
Q 003258 384 LPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (835)
Q Consensus 384 vP~~~~~--~i~~~---------------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDE 439 (835)
+|+.... .+++. +.++..+++.+..++.+++||+||+ |+++|++++.+|+++||||
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDE 164 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE 164 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 6665421 12221 2345566777778899999999999 8999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 440 p~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||+||||..+..+.. ++..+.+.|.|+|++||+++ +..+|+++..+.+|++.+.
T Consensus 165 Pt~gLD~~~~~~l~~-~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~ 219 (306)
T PRK13537 165 PTTGLDPQARHLMWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAE 219 (306)
T ss_pred CCcCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999 55556767899999999987 6689999999999998765
No 36
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=6.6e-27 Score=239.76 Aligned_cols=160 Identities=21% Similarity=0.268 Sum_probs=134.4
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC--------------
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------------- 389 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~-------------- 389 (835)
||+++||||.|+++.+ ++||+++.| ++++++||+||||||+||+| .++.-|.+|.
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~g-ef~vliGpSGsGKTTtLkMI--------NrLiept~G~I~i~g~~i~~~d~~ 71 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEG-EFLVLIGPSGSGKTTTLKMI--------NRLIEPTSGEILIDGEDISDLDPV 71 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCC-eEEEEECCCCCcHHHHHHHH--------hcccCCCCceEEECCeecccCCHH
Confidence 7899999999998766 999999999 99999999999999999999 3333333331
Q ss_pred ----------------CCchH---------------------HHHHHHHcCCc--ccccCCcccchHHHH-HHHHHHHHc
Q 003258 390 ----------------PRLPW---------------------FDLILADIGDH--QSLEQNLSTFSGHIS-RIVDILELV 429 (835)
Q Consensus 390 ----------------~~i~~---------------------~d~i~~~ig~~--~~~~~~lstfSgg~~-rl~~~~~la 429 (835)
+.+++ .++++..+|++ +..+++++.|||||+ |+-.+++++
T Consensus 72 ~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred HHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 11111 34567778886 578999999999998 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
.+|+++||||||+.+||..+..|-.-+.+--.+.+.|+||+|||++ -..+++++..+..|.+...
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~ 217 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQY 217 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEe
Confidence 9999999999999999999999999777665667999999999987 5579999999999987643
No 37
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.94 E-value=1.8e-26 Score=239.98 Aligned_cols=163 Identities=15% Similarity=0.219 Sum_probs=129.8
Q ss_pred eEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh----------------------c
Q 003258 326 EMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------S 378 (835)
Q Consensus 326 ~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m----------------------a 378 (835)
|++++|+++.|++ +.+ ++||++.+| ++++|+||||||||||||+| |++.+- .
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKG-EMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLR 79 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHH
Confidence 5789999999964 334 999999999 99999999999999999999 554320 0
Q ss_pred ccceeecCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcE
Q 003258 379 KAGLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (835)
Q Consensus 379 ~~G~~vP~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~L 434 (835)
+.-.|+|+.... .+++ +.+++..+|+.+..++.+++|||||+ |++++++++.+|++
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL 159 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 112355655311 1111 12345667787788899999999999 89999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCc
Q 003258 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (835)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~ 490 (835)
+||||||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|.
T Consensus 160 lllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 160 LLADEPTGNLDPELSRDIMR-LFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGR 215 (216)
T ss_pred EEEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999999 55556666889999999987 566899998888775
No 38
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=2.1e-26 Score=237.74 Aligned_cols=165 Identities=19% Similarity=0.244 Sum_probs=131.8
Q ss_pred eEEEeeeeeecCCc----ee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhh-hh-------h--------------
Q 003258 326 EMTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLA-SL-------M-------------- 377 (835)
Q Consensus 326 ~l~~~~ls~~y~~~----~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli-~~-------m-------------- 377 (835)
|++++||++.|+.. .+ ++||++.+| ++++|+||+||||||||+++|.+ .+ .
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~G-e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAG-EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHH
Confidence 46789999988542 23 999999999 99999999999999999999533 21 1
Q ss_pred --cccceeecCCCC--CCchH---------------------HHHHHHHcCCccccc-CCcccchHHHH-HHHHHHHHcC
Q 003258 378 --SKAGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLE-QNLSTFSGHIS-RIVDILELVS 430 (835)
Q Consensus 378 --a~~G~~vP~~~~--~~i~~---------------------~d~i~~~ig~~~~~~-~~lstfSgg~~-rl~~~~~la~ 430 (835)
.+.-.|++|... ..++. ...++..+|+.+... ++++.|||||+ |+++|++++.
T Consensus 80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~ 159 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN 159 (226)
T ss_pred HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence 111235555542 12222 233456678887776 88999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCce
Q 003258 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT 491 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v 491 (835)
+|++||.||||.+||+..+..+...+.+.-.+.|.|+|++|||.+++.+|++.+.+.+|.+
T Consensus 160 ~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 160 NPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220 (226)
T ss_pred CCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCee
Confidence 9999999999999999999999995544445668999999999999999999999999973
No 39
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.1e-26 Score=238.91 Aligned_cols=166 Identities=20% Similarity=0.194 Sum_probs=131.1
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c----------ccceeecC
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S----------KAGLYLPA 386 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a----------~~G~~vP~ 386 (835)
++++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+- . +.-.++|+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPG-EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 357899999987655 999999999 99999999999999999999 554321 0 11235565
Q ss_pred CCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCC
Q 003258 387 KNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (835)
Q Consensus 387 ~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~ 442 (835)
.... .+++ +.+++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~ 159 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLS 159 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 5311 1111 12345667777778899999999999 8999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 443 glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
|||+.....+...+.+...+.+.++|++||+.+ +..+|++++.+.+|.+..
T Consensus 160 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 160 ALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999999554433335889999999987 678999999999987753
No 40
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.94 E-value=2.3e-26 Score=251.57 Aligned_cols=168 Identities=20% Similarity=0.230 Sum_probs=136.1
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------------------ccccee
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLY 383 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------------------a~~G~~ 383 (835)
.|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...|
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARG-ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 57999999999988655 999999999 99999999999999999999 665321 111235
Q ss_pred ecCCCCC--CchHH---------------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeC
Q 003258 384 LPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (835)
Q Consensus 384 vP~~~~~--~i~~~---------------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDE 439 (835)
+|+.... .+++. +.++..+|+.+..++.+++|||||+ |+.++++++.+|+++||||
T Consensus 82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 161 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDE 161 (303)
T ss_pred EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 6665321 11222 2345566777778899999999999 8999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 440 p~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||+||||.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 Pt~gLD~~~~~~l~~-~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~ 216 (303)
T TIGR01288 162 PTTGLDPHARHLIWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE 216 (303)
T ss_pred CCcCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999 44555666899999999987 6679999999999988654
No 41
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=2e-26 Score=234.80 Aligned_cols=167 Identities=21% Similarity=0.337 Sum_probs=138.0
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc---------ccceeecC
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS---------KAGLYLPA 386 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma---------~~G~~vP~ 386 (835)
++++++|+|+||++.+ ++||.+++| ++++++||||+||||++++| |++.+ .+ ++| |.|-
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G-~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIG-yLPE 79 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPG-EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG-YLPE 79 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCC-eEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcc-cChh
Confidence 5789999999999776 999999999 99999999999999999999 44432 11 122 3443
Q ss_pred CCC--CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCC
Q 003258 387 KNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (835)
Q Consensus 387 ~~~--~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~ 442 (835)
+.. ..+.+ .+.++.+++......+++.+||-|++ ++.++.+++++|.|||||||+|
T Consensus 80 ERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFS 159 (300)
T COG4152 80 ERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFS 159 (300)
T ss_pred hhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCcc
Confidence 321 12222 23457778888888999999999988 7999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeecc
Q 003258 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (835)
Q Consensus 443 glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~~ 495 (835)
||||.....|-.++.+ +++.|+|||++||.++ ...+||+...+..|...++.
T Consensus 160 GLDPVN~elLk~~I~~-lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G 212 (300)
T COG4152 160 GLDPVNVELLKDAIFE-LKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYG 212 (300)
T ss_pred CCChhhHHHHHHHHHH-HHhcCCEEEEecchHHHHHHHhhhhheecCCceEEec
Confidence 9999999999996655 7888999999999988 88999999999999887763
No 42
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.93 E-value=3.2e-26 Score=236.27 Aligned_cols=161 Identities=22% Similarity=0.241 Sum_probs=129.1
Q ss_pred EeeeeeecCC-cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh----------------cccceeecCCC
Q 003258 329 VGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYLPAKN 388 (835)
Q Consensus 329 ~~~ls~~y~~-~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m----------------a~~G~~vP~~~ 388 (835)
++|+++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.-.|+|+..
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAG-EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 5789999986 554 999999999 99999999999999999999 554321 01123556653
Q ss_pred C---CCchH-----------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHH
Q 003258 389 H---PRLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (835)
Q Consensus 389 ~---~~i~~-----------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~ 447 (835)
. ...++ +.+++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+|||+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 160 (205)
T cd03226 81 DYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYK 160 (205)
T ss_pred hhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHH
Confidence 1 11111 23456777888888999999999999 899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCce
Q 003258 448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAAT 491 (835)
Q Consensus 448 ~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v 491 (835)
....+.. ++..+.+.+.++|++||+.+ +..+|++++.+.+|++
T Consensus 161 ~~~~l~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 161 NMERVGE-LIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred HHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999988 55556556889999999987 5678999999988865
No 43
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.93 E-value=4.7e-26 Score=243.35 Aligned_cols=170 Identities=17% Similarity=0.209 Sum_probs=137.3
Q ss_pred CCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------cccceeecC
Q 003258 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLPA 386 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------a~~G~~vP~ 386 (835)
..+|+++||+++|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.-.|+|+
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~G-e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q 88 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAG-QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ 88 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence 468999999999987655 999999999 99999999999999999999 554321 111235565
Q ss_pred CCCC--CchH---------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHh
Q 003258 387 KNHP--RLPW---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (835)
Q Consensus 387 ~~~~--~i~~---------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~ 448 (835)
.... ...+ +.+++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+|||+..
T Consensus 89 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~ 168 (257)
T PRK11247 89 DARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168 (257)
T ss_pred CccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 5311 0111 23456677888888999999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 449 GVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 449 ~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
...+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|.+..+
T Consensus 169 ~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~ 215 (257)
T PRK11247 169 RIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLD 215 (257)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 999999555544556889999999987 5679999999999988654
No 44
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.93 E-value=4.5e-26 Score=237.17 Aligned_cols=166 Identities=22% Similarity=0.311 Sum_probs=132.9
Q ss_pred eEEEeeeeeecCCc----ee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------------------ccc
Q 003258 326 EMTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKA 380 (835)
Q Consensus 326 ~l~~~~ls~~y~~~----~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------------------a~~ 380 (835)
|++++|+++.|++. ++ ++||++.+| ++++|+||||||||||||+| |+..+- .+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPG-EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRR 79 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhh
Confidence 57899999999875 45 999999999 99999999999999999999 554321 011
Q ss_pred ceeecCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEE
Q 003258 381 GLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (835)
Q Consensus 381 G~~vP~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlL 436 (835)
-.++|+.... .+++ +++++..+|+.+.+++.+.+|||||+ |++++++++.+|+++|
T Consensus 80 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ill 159 (218)
T cd03266 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLL 159 (218)
T ss_pred EEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 2355555311 1111 22356677887788999999999999 8999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
|||||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 160 lDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 160 LDEPTTGLDVMATRALRE-FIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred EcCCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 999999999999999999 44555666889999999987 677999999999988753
No 45
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=5.1e-26 Score=237.31 Aligned_cols=167 Identities=23% Similarity=0.276 Sum_probs=132.5
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c-----------ccceeec
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-----------KAGLYLP 385 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a-----------~~G~~vP 385 (835)
++++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+. . +.-.|+|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRG-EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 368899999987666 999999999 99999999999999999999 654321 0 1123556
Q ss_pred CCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCC
Q 003258 386 AKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (835)
Q Consensus 386 ~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~ 441 (835)
+.... .+++ ++.++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt 159 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 55311 1111 23346667887778899999999999 899999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+|||+.....+...+.+...+.+.++|++||+.+ +..+|++++.+.+|.+...
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 213 (220)
T cd03265 160 IGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAE 213 (220)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999554443334889999999987 6678999999999988643
No 46
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.93 E-value=4.6e-26 Score=237.07 Aligned_cols=162 Identities=21% Similarity=0.273 Sum_probs=128.1
Q ss_pred EEEeeeeeecCC----cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh----------------------
Q 003258 327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (835)
Q Consensus 327 l~~~~ls~~y~~----~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m---------------------- 377 (835)
++++||++.|++ +.+ ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G-~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKG-EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCC-CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence 357899999976 445 999999999 99999999999999999999 554320
Q ss_pred -cccceeecCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 378 -SKAGLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 378 -a~~G~~vP~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
.+.-.|+|+.... .+++ ++.++..+|+....++.+.+|||||+ |++++++++.+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (218)
T cd03255 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP 159 (218)
T ss_pred HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCC
Confidence 1112355554310 1111 23456677887778899999999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCc
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAA 490 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~el~~~~~~~~~~~n~~ 490 (835)
+++||||||+|||+.....+...+ ..+.+ .+.|+|++||+.+...+|++++.+.+|.
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l-~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~ 217 (218)
T cd03255 160 KIILADEPTGNLDSETGKEVMELL-RELNKEAGTTIVVVTHDPELAEYADRIIELRDGK 217 (218)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHH-HHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCc
Confidence 999999999999999999999944 45554 5889999999987555899998888875
No 47
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.93 E-value=5.6e-26 Score=235.81 Aligned_cols=162 Identities=17% Similarity=0.217 Sum_probs=128.2
Q ss_pred eEEEeeeeeecC-Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh----------------------hcc
Q 003258 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------MSK 379 (835)
Q Consensus 326 ~l~~~~ls~~y~-~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~----------------------ma~ 379 (835)
|++++|+++.|+ +..+ ++||++.+| ++++|+||||||||||||+| |++.+ +.+
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G-~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKG-EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 578999999994 5444 999999999 99999999999999999999 55431 011
Q ss_pred cceeecCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 380 AGLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 380 ~G~~vP~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
.-.|+|+.... .+++ +.+++..+|+.+..++.+++|||||+ |++++++++.+|+++
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 159 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLL 159 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 12355655311 1111 12345667777778899999999999 899999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCC
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA 489 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~ 489 (835)
||||||+|+|+.....+...+. .+.+.+.|+|++||+.+ +..+|++++.+.+|
T Consensus 160 lLDEPt~~LD~~~~~~l~~~l~-~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 160 LADEPTGNLDPDLSERILDLLK-RLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred EEeCCcccCCHHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHhcCEEEEecCC
Confidence 9999999999999999999444 45556899999999987 66789998888776
No 48
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=6.1e-26 Score=236.72 Aligned_cols=166 Identities=21% Similarity=0.251 Sum_probs=130.8
Q ss_pred EEEeeeeeecCC----cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------cccceeec
Q 003258 327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLP 385 (835)
Q Consensus 327 l~~~~ls~~y~~----~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------a~~G~~vP 385 (835)
++++|+++.|++ +.+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~ 79 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEG-EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEe
Confidence 357899999986 455 999999999 99999999999999999999 554321 11123556
Q ss_pred CCCC--CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCC
Q 003258 386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (835)
Q Consensus 386 ~~~~--~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~ 441 (835)
+... ..+++ +..++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt 159 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPF 159 (220)
T ss_pred cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 5431 11111 22345667777778899999999999 899999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccccc--CCceee
Q 003258 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE--NAATEF 493 (835)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~--n~~v~~ 493 (835)
+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+. +|.+..
T Consensus 160 ~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 160 SALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 9999999999999555443455889999999987 678999999998 687653
No 49
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.93 E-value=7.5e-26 Score=229.04 Aligned_cols=154 Identities=24% Similarity=0.343 Sum_probs=130.6
Q ss_pred EeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCC----------------
Q 003258 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP---------------- 390 (835)
Q Consensus 329 ~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~---------------- 390 (835)
++|+++.|++..+ ++||++.+| ++++|+||||+||||||++| +|+..|.+|..
T Consensus 2 ~~~l~~~~~~~~~l~~~~~~i~~G-~~~~l~G~nGsGKStLl~~i--------~G~~~~~~G~v~~~g~~~~~~~~~~~~ 72 (180)
T cd03214 2 VENLSVGYGGRTVLDDLSLSIEAG-EIVGILGPNGAGKSTLLKTL--------AGLLKPSSGEILLDGKDLASLSPKELA 72 (180)
T ss_pred eeEEEEEECCeeeEeeeEEEECCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 6789999987555 999999999 99999999999999999999 66655555421
Q ss_pred -CchHHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcC-CcEE
Q 003258 391 -RLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLA 467 (835)
Q Consensus 391 -~i~~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~-~~~v 467 (835)
.++++.+++..+|+.+.+++.+.+||+||+ |++++++++.+|+++||||||+|+|+.....+.. ++..+.++ +.|+
T Consensus 73 ~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~-~l~~~~~~~~~ti 151 (180)
T cd03214 73 RKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE-LLRRLARERGKTV 151 (180)
T ss_pred HHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHhcCCEE
Confidence 233444567888998888999999999999 8999999999999999999999999999999999 44555554 7899
Q ss_pred EEEecchh-HHhhhcccccccCCcee
Q 003258 468 VVTTHYAD-LSCLKDKDTRFENAATE 492 (835)
Q Consensus 468 iitTH~~e-l~~~~~~~~~~~n~~v~ 492 (835)
|++||+.+ +..+|++.+.+.+|++.
T Consensus 152 ii~sh~~~~~~~~~d~~~~l~~g~i~ 177 (180)
T cd03214 152 VMVLHDLNLAARYADRVILLKDGRIV 177 (180)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999987 45899999999988764
No 50
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=7e-26 Score=238.65 Aligned_cols=166 Identities=19% Similarity=0.227 Sum_probs=132.0
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh----------------------cccc
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKAG 381 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m----------------------a~~G 381 (835)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.-
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRG-EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 357899999987655 999999999 99999999999999999999 554321 0112
Q ss_pred eeecCCCCC--CchH----------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEE
Q 003258 382 LYLPAKNHP--RLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (835)
Q Consensus 382 ~~vP~~~~~--~i~~----------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlL 436 (835)
.++|+.... .+++ +.+++..+|+.+..++.+++|||||+ |++++++++.+|+++|
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll 159 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL 159 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 356665311 1111 12345667777778899999999999 8999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 437 IDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|||||+|||+.....+... +..+.+ .+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 160 lDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~ 218 (235)
T cd03261 160 YDEPTAGLDPIASGVIDDL-IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAE 218 (235)
T ss_pred ecCCcccCCHHHHHHHHHH-HHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEe
Confidence 9999999999999999994 445554 5889999999987 6678999999999988654
No 51
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=8.2e-26 Score=237.70 Aligned_cols=168 Identities=17% Similarity=0.173 Sum_probs=133.4
Q ss_pred eEEEeeeeeecCCc----ee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------------------
Q 003258 326 EMTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (835)
Q Consensus 326 ~l~~~~ls~~y~~~----~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------------- 377 (835)
|++++|+++.|+++ ++ ++||++.+| ++++|+||||||||||||+| |++.+.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKG-EIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRK 79 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHH
Confidence 57899999999865 45 999999999 99999999999999999999 554321
Q ss_pred -cccceeecCCCCC--CchHH---------------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 378 -SKAGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 378 -a~~G~~vP~~~~~--~i~~~---------------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
.+...|+|+.... .+++. .+++..+|+.+..++.+++||+||+ |++++++++.+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (233)
T cd03258 80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP 159 (233)
T ss_pred HHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 1112356665421 11222 2345566777778899999999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (233)
T cd03258 160 KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE 222 (233)
T ss_pred CEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999555433344889999999987 5678999999999988643
No 52
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.93 E-value=7.4e-26 Score=234.73 Aligned_cols=166 Identities=14% Similarity=0.192 Sum_probs=131.0
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c----------ccceeecC
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S----------KAGLYLPA 386 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a----------~~G~~vP~ 386 (835)
++++|+++.|+++.+ ++||++.+| ++++|+||||+|||||||+| |++.+- . +.-.++|+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADG-EFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 357899999987665 999999999 99999999999999999999 554321 0 01235555
Q ss_pred CCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCC
Q 003258 387 KNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (835)
Q Consensus 387 ~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~ 442 (835)
.... .+++ ++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~ 159 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLS 159 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 4311 1111 12346667777778999999999999 7999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 443 glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
|||+.....+...+.+...+.+.|+|++||+.+ +..+|+++..+.+|.+..
T Consensus 160 ~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 160 NLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 999999999999554433345889999999987 677899999999887653
No 53
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.93 E-value=6.7e-26 Score=234.29 Aligned_cols=164 Identities=23% Similarity=0.280 Sum_probs=131.5
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----------------cccceeecC
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 386 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-----------------a~~G~~vP~ 386 (835)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+. .+.-.++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKG-EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 357899999987665 999999999 99999999999999999999 554320 011235666
Q ss_pred CCCC--CchH-----------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCH
Q 003258 387 KNHP--RLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (835)
Q Consensus 387 ~~~~--~i~~-----------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp 446 (835)
.... ..++ ++.++..+|+.+..++.+.+|||||+ |++++++++.+|+++||||||+|||+
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 159 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP 159 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence 5321 1112 23345667777788899999999999 79999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCcee
Q 003258 447 SEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (835)
Q Consensus 447 ~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~ 492 (835)
.....+.. ++..+.+.+.++|++||+.+ +..+|++++.+.+|++.
T Consensus 160 ~~~~~l~~-~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~ 205 (208)
T cd03268 160 DGIKELRE-LILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLI 205 (208)
T ss_pred HHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 99999998 55555556889999999988 55789999999998765
No 54
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=7.5e-26 Score=234.29 Aligned_cols=165 Identities=19% Similarity=0.278 Sum_probs=130.8
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------------cccceeecCCC
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------SKAGLYLPAKN 388 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m---------------a~~G~~vP~~~ 388 (835)
++++|+++.|+++.+ ++||++.+| ++++|+|||||||||||++| |+..+- ...-.|+|+..
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKG-EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 357899999987655 899999999 99999999999999999999 554321 01123556553
Q ss_pred CC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCC
Q 003258 389 HP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (835)
Q Consensus 389 ~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~gl 444 (835)
.. .+++ +.+++..+|+....++.+.+||+||+ |++++++++.+|+++||||||+|+
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~L 159 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 11 1111 22345666777778889999999999 799999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
|+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|.+..
T Consensus 160 D~~~~~~~~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 160 DPVNVELLKD-VIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred CHHHHHHHHH-HHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 9999999999 45556666889999999987 567899999999987653
No 55
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=9.8e-26 Score=240.71 Aligned_cols=167 Identities=16% Similarity=0.179 Sum_probs=131.8
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c-------ccceeecCCC
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-------KAGLYLPAKN 388 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a-------~~G~~vP~~~ 388 (835)
|++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- . ....|+|+..
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~ 79 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESG-ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE 79 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC
Confidence 5789999999987655 999999999 99999999999999999999 655321 0 0113555553
Q ss_pred CC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCC
Q 003258 389 HP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (835)
Q Consensus 389 ~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~gl 444 (835)
.. ..++ +..++..+|+....++.+++|||||+ |++++++++.+|+++||||||+||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~L 159 (255)
T PRK11248 80 GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGAL 159 (255)
T ss_pred ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 11 1111 23446667777778899999999999 899999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccC--Cceee
Q 003258 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN--AATEF 493 (835)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n--~~v~~ 493 (835)
|+.....+...+.+...+.|+|+|++||+.+ +..+|++++.+.+ |.+..
T Consensus 160 D~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~ 211 (255)
T PRK11248 160 DAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211 (255)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence 9999999999554433445889999999987 6679999999874 77654
No 56
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.93 E-value=8.3e-26 Score=234.00 Aligned_cols=159 Identities=23% Similarity=0.271 Sum_probs=125.9
Q ss_pred EeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cccceee
Q 003258 329 VGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYL 384 (835)
Q Consensus 329 ~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G~~v 384 (835)
++|+++.|++ +.+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.-.|+
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G-~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKG-EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 5789999976 555 999999999 99999999999999999999 554321 0112356
Q ss_pred cCCCC---CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeC
Q 003258 385 PAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (835)
Q Consensus 385 P~~~~---~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDE 439 (835)
|+... ...++ +.+++..+|+...+++.++.|||||+ |++++++++.+|+++||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 160 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE 160 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 66531 11121 12345667777778899999999999 8999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCC
Q 003258 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA 489 (835)
Q Consensus 440 p~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~ 489 (835)
||+|||+.....+...+ ..+.+.+.++|++||+.+ +..+|++++.+.+|
T Consensus 161 Pt~~LD~~~~~~~~~~l-~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 161 PTAGLDPAGRRELLELL-KKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred CcccCCHHHHHHHHHHH-HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999955 445555889999999987 56689999888776
No 57
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.93 E-value=1e-25 Score=236.72 Aligned_cols=165 Identities=22% Similarity=0.284 Sum_probs=132.4
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------c-cccee
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S-KAGLY 383 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a-~~G~~ 383 (835)
++++||++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+- . +.-.|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQG-EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 357899999987655 999999999 99999999999999999999 554320 0 11235
Q ss_pred ecCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeC
Q 003258 384 LPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (835)
Q Consensus 384 vP~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDE 439 (835)
+|+.... .+++ ++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 159 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 5655311 1111 22345666777778899999999999 7999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 440 p~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 160 Pt~~LD~~~~~~~~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 213 (232)
T cd03218 160 PFAGVDPIAVQDIQK-IIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLA 213 (232)
T ss_pred CcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 999999999999999 55566666889999999986 788999999999998764
No 58
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.93 E-value=1.3e-25 Score=236.93 Aligned_cols=167 Identities=20% Similarity=0.216 Sum_probs=133.1
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c-----------ccceee
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-----------KAGLYL 384 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a-----------~~G~~v 384 (835)
|++++|++++|+++.+ ++||++.+| ++++|+|||||||||||++| |+..+- . +...|+
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~ 79 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPG-EFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVV 79 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEe
Confidence 5789999999987665 999999999 99999999999999999999 554321 0 112355
Q ss_pred cCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCC
Q 003258 385 PAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (835)
Q Consensus 385 P~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp 440 (835)
|+.... ..++ +..++..+|+.+.+++.+++|||||+ |++++++++.+|+++|||||
T Consensus 80 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 159 (236)
T TIGR03864 80 FQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEP 159 (236)
T ss_pred CCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 655311 1111 12345667777778899999999999 89999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHHHHh-cCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 441 GSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 441 ~~glDp~~~~aL~~all~~l~-~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
|+|||+.....+...+. .+. +.+.|+|++||+.+....|++++.+.+|.+...
T Consensus 160 ~~~LD~~~~~~l~~~l~-~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~ 213 (236)
T TIGR03864 160 TVGLDPASRAAIVAHVR-ALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLAD 213 (236)
T ss_pred ccCCCHHHHHHHHHHHH-HHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEe
Confidence 99999999999999554 455 458899999999885556999999999987644
No 59
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=9.3e-26 Score=236.54 Aligned_cols=168 Identities=20% Similarity=0.238 Sum_probs=135.6
Q ss_pred CeEEEeeeeeecCCc-ee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------------ccc
Q 003258 325 SEMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKA 380 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~-~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------------a~~ 380 (835)
.|+.++++++.|++. .+ ++|+++.+| +.++|+||||||||||++++ ||+.+- .+.
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~G-e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKG-ERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 478899999999765 44 999999999 99999999999999999999 443221 011
Q ss_pred ceeecCCCCCCc---hH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 381 GLYLPAKNHPRL---PW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 381 G~~vP~~~~~~i---~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
-.++.+.+...+ ++ ++.++..+|+.+..++.+.+|||||+ |+++|..++.+|.++
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~il 160 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEIL 160 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEE
Confidence 112333321111 00 34567888999999999999999999 899999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhcC-CcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~-~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||||||+||||..+..+.. ++..|... |.|+|++|||++ +..+|++.+.+.+|.+..+
T Consensus 161 iLDEPta~LD~~~~~~l~~-~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~ 220 (235)
T COG1122 161 LLDEPTAGLDPKGRRELLE-LLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILAD 220 (235)
T ss_pred EEcCCCCCCCHHHHHHHHH-HHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeec
Confidence 9999999999999999999 66666655 689999999988 6778999999999988655
No 60
>PRK10908 cell division protein FtsE; Provisional
Probab=99.93 E-value=1.3e-25 Score=234.66 Aligned_cols=165 Identities=13% Similarity=0.136 Sum_probs=131.0
Q ss_pred eEEEeeeeeec-CCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------h---------------cc
Q 003258 326 EMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M---------------SK 379 (835)
Q Consensus 326 ~l~~~~ls~~y-~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------m---------------a~ 379 (835)
|++++|+++.| ++..+ ++||++.+| ++++|+||||||||||||+| |+..+ . .+
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPG-EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 57899999999 55554 999999999 99999999999999999999 55431 0 01
Q ss_pred cceeecCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 380 AGLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 380 ~G~~vP~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
.-.|+|+.... ...+ +..++..+|+.+.+++.+++||+||+ |++++++++.+|+++
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVL 159 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 12356665321 1111 12345667777778899999999999 899999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCcee
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~ 492 (835)
||||||+|||+.....+.. ++..+.+.+.++|++||+.+ +..+|++++.+.+|.+.
T Consensus 160 llDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 160 LADEPTGNLDDALSEGILR-LFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred EEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 9999999999999999998 45555656889999999987 56789999999888763
No 61
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.4e-25 Score=232.53 Aligned_cols=166 Identities=17% Similarity=0.251 Sum_probs=131.3
Q ss_pred EEEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c----------ccceeecCCC
Q 003258 327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S----------KAGLYLPAKN 388 (835)
Q Consensus 327 l~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a----------~~G~~vP~~~ 388 (835)
+.++|+++.|++..+++||++.+| ++++|+||||||||||||+| |+..+- . +...|+|+..
T Consensus 1 i~~~~l~~~~~~~~~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 79 (211)
T cd03298 1 VRLDKIRFSYGEQPMHFDLTFAQG-EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQEN 79 (211)
T ss_pred CEEEeEEEEeCCEecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEeccc
Confidence 357899999987666999999999 99999999999999999999 554321 0 1123555553
Q ss_pred CC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCC
Q 003258 389 HP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (835)
Q Consensus 389 ~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~gl 444 (835)
.. .+++ +..++..+|+....++.+.+||+||+ |++++++++.+|+++||||||+|+
T Consensus 80 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~L 159 (211)
T cd03298 80 NLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAAL 159 (211)
T ss_pred ccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 11 0111 23345666777778899999999999 899999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
|+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|.+..
T Consensus 160 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 160 DPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 9999999999555443445899999999987 567899999999988753
No 62
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.5e-25 Score=236.77 Aligned_cols=167 Identities=19% Similarity=0.213 Sum_probs=133.1
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c----------ccceeec
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S----------KAGLYLP 385 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a----------~~G~~vP 385 (835)
+++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- . +.-.|+|
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSG-ELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 4789999999987665 999999999 99999999999999999999 554321 0 1123555
Q ss_pred CCCCC--CchH-------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEE
Q 003258 386 AKNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (835)
Q Consensus 386 ~~~~~--~i~~-------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLL 437 (835)
+.... .+++ ++.++..+|+....++.+++||+||+ |++++++++.+|+++||
T Consensus 81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 160 (239)
T cd03296 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLL 160 (239)
T ss_pred cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 55311 1111 12345666777778899999999999 89999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 438 DEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||||+|||+.....+.. ++..+.+ .+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 161 DEP~~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (239)
T cd03296 161 DEPFGALDAKVRKELRR-WLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218 (239)
T ss_pred cCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 99999999999999999 4555554 4889999999987 6788999999999987643
No 63
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.4e-25 Score=241.50 Aligned_cols=167 Identities=17% Similarity=0.189 Sum_probs=133.5
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------------------cccc
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAG 381 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m---------------------a~~G 381 (835)
||+++||+++|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+- .+..
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLS-PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 6889999999987655 999999999 99999999999999999999 554320 0112
Q ss_pred eeecCCCCC---CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEE
Q 003258 382 LYLPAKNHP---RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (835)
Q Consensus 382 ~~vP~~~~~---~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlL 436 (835)
.++|+.... ...+ ++.++..+|+.+..++.+++|||||+ |++++++++.+|+++|
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lll 159 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLL 159 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 356665310 0011 12345566777777889999999999 8999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|||||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 160 LDEPt~~LD~~~~~~l~~-~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~ 217 (271)
T PRK13638 160 LDEPTAGLDPAGRTQMIA-IIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTH 217 (271)
T ss_pred EeCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999998 55555556889999999987 5578999999999988654
No 64
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.93 E-value=1.5e-25 Score=244.97 Aligned_cols=166 Identities=19% Similarity=0.294 Sum_probs=135.4
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------------------cccceee
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYL 384 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------------------a~~G~~v 384 (835)
+++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.-.|+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~G-ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~ 80 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKG-RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence 4789999999987665 999999999 99999999999999999999 554321 1112356
Q ss_pred cCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCC
Q 003258 385 PAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (835)
Q Consensus 385 P~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp 440 (835)
|+.... .+++ +++++..+|+.+..++.+++||+||+ |+.++++++.+|+++|||||
T Consensus 81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEP 160 (301)
T TIGR03522 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEP 160 (301)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 665311 1111 23446667888888999999999999 89999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 441 ~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|+||||.....+.. ++..+.+ +.|+|++||+++ +..+|+++..+.+|.+.+.
T Consensus 161 t~gLD~~~~~~l~~-~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~ 213 (301)
T TIGR03522 161 TTGLDPNQLVEIRN-VIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIVAD 213 (301)
T ss_pred cccCCHHHHHHHHH-HHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999 5555665 689999999987 7789999999999998764
No 65
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.93 E-value=1.4e-25 Score=252.78 Aligned_cols=167 Identities=22% Similarity=0.275 Sum_probs=137.4
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------ccccee
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G~~ 383 (835)
||+++||+++|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+. ++.-.+
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~G-eiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREG-SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCC-CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 7899999999998766 999999999 99999999999999999999 665321 111235
Q ss_pred ecCCCCC--CchH-------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 384 LPAKNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 384 vP~~~~~--~i~~-------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
+|+.... .+++ +++++..+|+.+..++++.+|||||+ |+.++++++.+|+++
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iL 161 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVL 161 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 5665321 1111 33456777888888999999999999 899999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el-~~~~~~~~~~~n~~v~~~ 494 (835)
||||||+|||+.....+.. ++..+.+.+.|+|++||+.++ ..+|++++.+.+|++..+
T Consensus 162 LLDEPtsgLD~~~~~~l~~-lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~ 220 (402)
T PRK09536 162 LLDEPTASLDINHQVRTLE-LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAA 220 (402)
T ss_pred EEECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999998 666666668899999999884 579999999999988654
No 66
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.93 E-value=2.1e-25 Score=220.09 Aligned_cols=167 Identities=16% Similarity=0.226 Sum_probs=135.4
Q ss_pred eEEEeeeeeecCCce-e--ccceeecCCceEEEEEcCCCCChhhHHhhH--------Hhhhh---------------hc-
Q 003258 326 EMTVGSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL--------GLASL---------------MS- 378 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~-v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i--------Gli~~---------------ma- 378 (835)
||+++||+|.|++.+ . ++||++++| +++-|+||+|+|||||||+| |.+.+ +.
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~G-ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKG-EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCc-eEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 688999999997655 3 999999999 99999999999999999999 22211 11
Q ss_pred ccceeecCCCC--CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcE
Q 003258 379 KAGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (835)
Q Consensus 379 ~~G~~vP~~~~--~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~L 434 (835)
++| .|+|+.. ...++ +..++..+|+.+..+..+++||||++ |+++|++.+++|.+
T Consensus 80 ~IG-vVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~v 158 (223)
T COG2884 80 QIG-VVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAV 158 (223)
T ss_pred eee-eEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCe
Confidence 222 3333321 01112 23457888999999999999999988 89999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeecc
Q 003258 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (835)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~~ 495 (835)
||.||||.+|||.....|+. +++.+...|.||+++|||.+ +..+..+.+.+.+|.+..+.
T Consensus 159 LlADEPTGNLDp~~s~~im~-lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 159 LLADEPTGNLDPDLSWEIMR-LFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred EeecCCCCCCChHHHHHHHH-HHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999 88889999999999999998 45577777888999887653
No 67
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.93 E-value=1.7e-25 Score=231.98 Aligned_cols=162 Identities=22% Similarity=0.258 Sum_probs=128.5
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------------------cccce
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAGL 382 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m---------------------a~~G~ 382 (835)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G-~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKG-EVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 357899999987665 999999999 99999999999999999999 554320 11123
Q ss_pred eecCCCCC--CchHH----------------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEE
Q 003258 383 YLPAKNHP--RLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (835)
Q Consensus 383 ~vP~~~~~--~i~~~----------------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLL 437 (835)
|+|+.... .+++. ..++..+|+...+++.+.+||+||+ |++++++++.+|+++||
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 159 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLF 159 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 55655311 11211 2345566777778899999999999 79999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCc
Q 003258 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (835)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~ 490 (835)
||||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|.
T Consensus 160 DEP~~~LD~~~~~~l~~-~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 160 DEPTSALDPELVGEVLD-VMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred eCCccCCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999998 55556556889999999987 567999998888775
No 68
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=1.8e-25 Score=236.26 Aligned_cols=167 Identities=21% Similarity=0.240 Sum_probs=133.8
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------------------cccc
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAG 381 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m---------------------a~~G 381 (835)
|++++|+++.|++..+ ++||++.+| ++++|+||||+||||||++| |++.+- .+.-
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQG-EVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 5789999999987655 999999999 99999999999999999999 554321 0112
Q ss_pred eeecCCCCC--CchH----------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEE
Q 003258 382 LYLPAKNHP--RLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (835)
Q Consensus 382 ~~vP~~~~~--~i~~----------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlL 436 (835)
.|+|+.... .+.+ +.+++..+|+...+++.+++||+||+ |++++++++.+|+++|
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 159 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLML 159 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 355554311 1111 12345667777778899999999999 8999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|||||+|+|+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 160 lDEP~~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (240)
T PRK09493 160 FDEPTSALDPELRHEVLK-VMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAED 217 (240)
T ss_pred EcCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 999999999999999999 55556666899999999987 5578999999999988643
No 69
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.5e-25 Score=226.71 Aligned_cols=169 Identities=22% Similarity=0.305 Sum_probs=139.7
Q ss_pred CeEEEeeeeeec-CCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-----------------------h
Q 003258 325 SEMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------------------M 377 (835)
Q Consensus 325 ~~l~~~~ls~~y-~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-----------------------m 377 (835)
.||+++||++.| +++.. ++||+|++| ++++|+||+|+|||||||+| |++.+ .
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~G-E~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQG-EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCC-cEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 479999999999 55554 999999999 99999999999999999999 54422 3
Q ss_pred cccceeecCCCC--CCchHHH-----------------------------HHHHHcCCcccccCCcccchHHHH-HHHHH
Q 003258 378 SKAGLYLPAKNH--PRLPWFD-----------------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDI 425 (835)
Q Consensus 378 a~~G~~vP~~~~--~~i~~~d-----------------------------~i~~~ig~~~~~~~~lstfSgg~~-rl~~~ 425 (835)
+++| ++.+..+ .++.++. ..++++|+.+...+..++||||++ |+++|
T Consensus 81 ~~iG-mIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIA 159 (258)
T COG3638 81 RDIG-MIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIA 159 (258)
T ss_pred Hhce-eEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHH
Confidence 4556 3444431 1111111 247888999999999999999988 89999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeecc
Q 003258 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFSL 495 (835)
Q Consensus 426 ~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el-~~~~~~~~~~~n~~v~~~~ 495 (835)
++++++|.++|.|||++.|||.....++..+.+--.+.|.|+|++.|+.++ ..||++++.+.+|++.||.
T Consensus 160 RaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 160 RALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred HHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 999999999999999999999999999995555445668999999999995 5699999999999999983
No 70
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.93 E-value=1.8e-25 Score=247.57 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=134.3
Q ss_pred eEEEeeeeeecCC----cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------------------
Q 003258 326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (835)
Q Consensus 326 ~l~~~~ls~~y~~----~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------------- 377 (835)
||+++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |+..+-
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~G-ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAG-QIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 6889999999952 233 999999999 99999999999999999999 554320
Q ss_pred -cccceeecCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 378 -SKAGLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 378 -a~~G~~vP~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
.+.-.++|+.... ..++ +.+++..+|+.+..++++++|||||+ |++++++++.+|
T Consensus 80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P 159 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 159 (343)
T ss_pred HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence 1122456665421 1112 22456778888889999999999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
++|||||||++|||.....+.. ++..+.+ .|.|+|++||+++ +..+|+++..+.+|++..
T Consensus 160 ~iLLlDEPts~LD~~t~~~i~~-lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~ 221 (343)
T TIGR02314 160 KVLLCDEATSALDPATTQSILE-LLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE 221 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999 5556654 4899999999988 568999999999998764
No 71
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.93 E-value=2.3e-25 Score=239.65 Aligned_cols=169 Identities=19% Similarity=0.173 Sum_probs=134.2
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh----------------------cc
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SK 379 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m----------------------a~ 379 (835)
.||+++||++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+- .+
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 6 NLVDMRGVSFTRGNRCIFDNISLTVPRG-KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred ceEEEeCeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 47899999999987665 999999999 99999999999999999999 554320 11
Q ss_pred cceeecCCCCC--CchHHH----------------------HHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcE
Q 003258 380 AGLYLPAKNHP--RLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (835)
Q Consensus 380 ~G~~vP~~~~~--~i~~~d----------------------~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~L 434 (835)
...|+|+.... .+.+.+ .++..+|+.+..++.+++|||||+ |++++++++.+|++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l 164 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDL 164 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 12356665321 112212 235566777778899999999999 89999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+||||||+|||+.....+...+.+...+.|.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 165 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~ 225 (269)
T PRK11831 165 IMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAH 225 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEe
Confidence 99999999999999999999554433344889999999976 6778999999999987654
No 72
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.8e-25 Score=248.34 Aligned_cols=168 Identities=15% Similarity=0.156 Sum_probs=133.8
Q ss_pred eEEEeeeeeecC----Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------------------
Q 003258 326 EMTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (835)
Q Consensus 326 ~l~~~~ls~~y~----~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------------- 377 (835)
||+++||+++|+ +..+ ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~G-ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAG-EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRK 79 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHH
Confidence 688999999997 2344 999999999 99999999999999999999 554321
Q ss_pred -cccceeecCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 378 -SKAGLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 378 -a~~G~~vP~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
.+.-.|+|+.... .+++ +..++..+|+.+..++.+++|||||+ |++++++++.+|
T Consensus 80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p 159 (343)
T PRK11153 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNP 159 (343)
T ss_pred HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 1122366665421 1122 12345667888888999999999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++||||||+|||+.....+...+.+...+.|.|+|++||+++ +..+|++++.+.+|.+..+
T Consensus 160 ~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 160 KVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999444433445889999999987 5679999999999987643
No 73
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.93 E-value=2.4e-25 Score=232.17 Aligned_cols=164 Identities=21% Similarity=0.231 Sum_probs=128.6
Q ss_pred eEEEeeeeeecCC----cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------h--------------
Q 003258 326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M-------------- 377 (835)
Q Consensus 326 ~l~~~~ls~~y~~----~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------m-------------- 377 (835)
+++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |+..+ .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKG-EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHH
Confidence 3678999999964 234 999999999 99999999999999999999 55321 0
Q ss_pred -c-ccceeecCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCC
Q 003258 378 -S-KAGLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 378 -a-~~G~~vP~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~ 431 (835)
. +.-.|+|+.... .+++ +.+++..+|+.+..++.+++|||||+ |++++++++.+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 159 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQ 159 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence 0 112466665311 1111 22345667777778899999999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHh-cCCcEEEEEecchhHHhhhcccccccCCce
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLSCLKDKDTRFENAAT 491 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~-~~~~~viitTH~~el~~~~~~~~~~~n~~v 491 (835)
|+++||||||+|||+.....+... +..+. +.+.|+|++||+.+....+++++.+.+|++
T Consensus 160 p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i 219 (221)
T TIGR02211 160 PSLVLADEPTGNLDNNNAKIIFDL-MLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQL 219 (221)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEe
Confidence 999999999999999999999994 44554 458899999999886666788888888765
No 74
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.6e-25 Score=233.94 Aligned_cols=168 Identities=19% Similarity=0.258 Sum_probs=134.1
Q ss_pred eEEEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c----------ccceeecCC
Q 003258 326 EMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S----------KAGLYLPAK 387 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a----------~~G~~vP~~ 387 (835)
|++++||+++|++...++||++.+| ++++|+||||||||||||+| |+..+. . ....|+|+.
T Consensus 1 ~l~~~~l~~~~~~~~~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 79 (232)
T PRK10771 1 MLKLTDITWLYHHLPMRFDLTVERG-ERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQE 79 (232)
T ss_pred CeEEEEEEEEECCccceeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecc
Confidence 5789999999987666999999999 99999999999999999999 554321 0 112355655
Q ss_pred CCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCC
Q 003258 388 NHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (835)
Q Consensus 388 ~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~g 443 (835)
... .+++ +..++..+|+...+++.+.+||+||+ |++++++++.+|+++||||||+|
T Consensus 80 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~g 159 (232)
T PRK10771 80 NNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSA 159 (232)
T ss_pred cccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 311 1111 22345667777778999999999999 89999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 444 lDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||+.....+...+.+...+.++|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 160 LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~ 211 (232)
T PRK10771 160 LDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWD 211 (232)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999555444445889999999988 5678999999999987643
No 75
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.93 E-value=3.3e-25 Score=232.35 Aligned_cols=167 Identities=19% Similarity=0.236 Sum_probs=131.2
Q ss_pred CeEEEeeeeeecCCc-----ee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------------
Q 003258 325 SEMTVGSLSKGISDF-----PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 377 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~-----~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------- 377 (835)
.|++++||++.|++. .+ ++||++.+| ++++|+||||+|||||||+| |+..+.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRG-ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 589999999999752 33 999999999 99999999999999999999 554320
Q ss_pred ---cccceeecCCCCC--CchHH---------------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcC
Q 003258 378 ---SKAGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (835)
Q Consensus 378 ---a~~G~~vP~~~~~--~i~~~---------------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~ 430 (835)
.+.-.++|+.... .++.. .+++..+|+.+..++.+++||+||+ |+.++++++.
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 0112355655311 11222 2345566777778899999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCcee
Q 003258 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATE 492 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~ 492 (835)
+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+....|++.+.+.+|++.
T Consensus 164 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQ 225 (228)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999955443344588999999998866679999889888764
No 76
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.92 E-value=2.9e-25 Score=236.04 Aligned_cols=167 Identities=21% Similarity=0.206 Sum_probs=133.7
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------------
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 377 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------------------------- 377 (835)
|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPG-EVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 6899999999987655 999999999 99999999999999999999 554320
Q ss_pred --cccceeecCCCCC--CchH----------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcC
Q 003258 378 --SKAGLYLPAKNHP--RLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (835)
Q Consensus 378 --a~~G~~vP~~~~~--~i~~----------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~ 430 (835)
.....|+|+.... ..+. +..++..+|+....++.+++|||||+ |++++++++.
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~ 161 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM 161 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc
Confidence 0112355655311 1111 12335556777777899999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+|+++||||||+|||+.....+.. ++..+.+.+.++|++||+.+ +..+|++++.+.+|.+...
T Consensus 162 ~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (250)
T PRK11264 162 RPEVILFDEPTSALDPELVGEVLN-TIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQ 225 (250)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 999999999999999999999999 55556666889999999987 5678999999999987643
No 77
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.92 E-value=2.1e-25 Score=231.32 Aligned_cols=162 Identities=15% Similarity=0.174 Sum_probs=127.0
Q ss_pred EEEeeeeeecCC-cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh----------------------ccc
Q 003258 327 MTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKA 380 (835)
Q Consensus 327 l~~~~ls~~y~~-~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m----------------------a~~ 380 (835)
++++|+++.|++ +.+ ++||++.+| ++++|+|||||||||||++| |+..+- .+.
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAG-EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 357899999964 344 999999999 99999999999999999999 554320 011
Q ss_pred ceeecCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEE
Q 003258 381 GLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (835)
Q Consensus 381 G~~vP~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlL 436 (835)
-.++|+.... .+++ +..++..+|+.+..++.+.+||+||+ |++++++++.+|+++|
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILI 159 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEE
Confidence 2355655311 1111 12345666777778889999999999 7999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCc
Q 003258 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (835)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~ 490 (835)
|||||+|||+.....+...+ ..+.+.+.|+|++||+.+ +..+|++++.+.+|+
T Consensus 160 lDEPt~~LD~~~~~~~~~~l-~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 160 ADEPTGNLDPDTTWEIMNLL-KKINKAGTTVVVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred EeCCCCcCCHHHHHHHHHHH-HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999944 455656889999999987 556899998888775
No 78
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.92 E-value=2e-25 Score=218.51 Aligned_cols=161 Identities=20% Similarity=0.286 Sum_probs=141.3
Q ss_pred eEEEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCc-------------
Q 003258 326 EMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL------------- 392 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i------------- 392 (835)
|+.+++|.++|+..+..+|+.++.| ++++|+||+|+||||||+.| +|+..|++|...+
T Consensus 1 ~l~L~~V~~~y~~~~~~fdl~v~~g-e~vAi~GpSGaGKSTLLnLI--------AGF~~P~~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 1 MLALDDVRFSYGHLPMRFDLTVPAG-EIVAILGPSGAGKSTLLNLI--------AGFETPASGEILINGVDHTASPPAER 71 (231)
T ss_pred CccccceEEeeCcceEEEEEeecCC-cEEEEECCCCccHHHHHHHH--------HhccCCCCceEEEcCeecCcCCcccC
Confidence 5678899999998888999999999 99999999999999999999 8888887772111
Q ss_pred ---------------hH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 393 ---------------PW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 393 ---------------~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
++ ++.+...+|+....++.+.+||||++ |+++++.+..+.+++
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~Pil 151 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPIL 151 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeE
Confidence 11 45678899999999999999999999 899999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeecc
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~~ 495 (835)
|||||++.|||.-+..+...+.+...+++.|++++||..+ ...++++.+.+.+|.+....
T Consensus 152 LLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g 212 (231)
T COG3840 152 LLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQG 212 (231)
T ss_pred EecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeec
Confidence 9999999999999999998566655677899999999976 88899999999999998753
No 79
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.92 E-value=2.6e-25 Score=231.99 Aligned_cols=165 Identities=22% Similarity=0.253 Sum_probs=129.5
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------------ccccee
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------------a~~G~~ 383 (835)
|+++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |++.+- .+.-.|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEG-EIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 357899999987655 999999999 99999999999999999999 554320 111235
Q ss_pred ecCCCCC--CchHH-------------------HHHHHHc-CCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCC
Q 003258 384 LPAKNHP--RLPWF-------------------DLILADI-GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (835)
Q Consensus 384 vP~~~~~--~i~~~-------------------d~i~~~i-g~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp 440 (835)
+|+.... .+++. ..++..+ +..+..++.+.+|||||+ |++++++++.+|+++|||||
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 159 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP 159 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 5655311 11121 1234444 355667889999999999 89999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 441 ~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
|+|||+.....+... +..+.+.++|+|++||+.+ +..+|++++.+.+|++..
T Consensus 160 t~~LD~~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (222)
T cd03224 160 SEGLAPKIVEEIFEA-IRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVL 212 (222)
T ss_pred cccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE
Confidence 999999999999994 4455656889999999987 578999999999998764
No 80
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.92 E-value=4.5e-25 Score=233.42 Aligned_cols=167 Identities=19% Similarity=0.204 Sum_probs=131.8
Q ss_pred eEEEeeeeeecC-Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh----------------------cc
Q 003258 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SK 379 (835)
Q Consensus 326 ~l~~~~ls~~y~-~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m----------------------a~ 379 (835)
|+.++||++.|+ +..+ ++||++.+| ++++|+||||||||||||+| |+..+. .+
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPG-EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 578999999997 6555 999999999 99999999999999999999 554320 11
Q ss_pred cceeecCCCCC--CchH-----------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHH
Q 003258 380 AGLYLPAKNHP--RLPW-----------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILE 427 (835)
Q Consensus 380 ~G~~vP~~~~~--~i~~-----------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~ 427 (835)
...|+|+.... .+++ +.+++..+|+....++.+++|||||+ |++++++
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 159 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARA 159 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 12356655311 1111 12345566777778899999999999 8999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|.+..
T Consensus 160 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 226 (243)
T TIGR02315 160 LAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVF 226 (243)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 999999999999999999999999998444433445889999999987 557999999999988764
No 81
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.1e-25 Score=232.55 Aligned_cols=167 Identities=19% Similarity=0.199 Sum_probs=131.1
Q ss_pred CeEEEeeeeeecCC----cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------h-------------
Q 003258 325 SEMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M------------- 377 (835)
Q Consensus 325 ~~l~~~~ls~~y~~----~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------m------------- 377 (835)
.|++++||++.|++ .++ ++||++.+| ++++|+||||||||||||+| |++.+ .
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEG-EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 57899999999964 234 999999999 99999999999999999999 66432 0
Q ss_pred ---cccceeecCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcC
Q 003258 378 ---SKAGLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (835)
Q Consensus 378 ---a~~G~~vP~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~ 430 (835)
.+.-.|+|+.... .+++ +.+++..+|+.+..++.+.+|||||+ |++++++++.
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~ 162 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVN 162 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 0112356665311 1111 22446677887778899999999999 7999999999
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHh-cCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 431 RESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~-~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
+|+++||||||+|||+.....+.. ++..+. +.|.|+|++||+.+....+++.+.+.+|++..
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~ 225 (233)
T PRK11629 163 NPRLVLADEPTGNLDARNADSIFQ-LLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTA 225 (233)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEE
Confidence 999999999999999999999998 555554 45889999999988555556777788887754
No 82
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3e-25 Score=247.46 Aligned_cols=168 Identities=18% Similarity=0.210 Sum_probs=135.8
Q ss_pred eEEEeeeeeec-CCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c----------ccceee
Q 003258 326 EMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S----------KAGLYL 384 (835)
Q Consensus 326 ~l~~~~ls~~y-~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a----------~~G~~v 384 (835)
|++++||++.| ++..+ ++||++.+| ++++|+||||||||||||+| |+..+- . +...|+
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~G-e~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 81 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADG-EFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMV 81 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCC-CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 68899999999 66555 999999999 99999999999999999999 554321 0 112355
Q ss_pred cCCCC--CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCC
Q 003258 385 PAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (835)
Q Consensus 385 P~~~~--~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp 440 (835)
|++.. ..+++ +++++..+|+.+..++.+.+|||||+ |++++++++.+|+++|||||
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP 161 (356)
T PRK11650 82 FQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEP 161 (356)
T ss_pred eCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 65531 11122 23456677888889999999999999 89999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 441 ~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|++||+..+..+...+.+...+.+.|+|++|||.+ ...+||++..+.+|++...
T Consensus 162 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~ 216 (356)
T PRK11650 162 LSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQI 216 (356)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEE
Confidence 99999999999999555544445899999999976 7789999999999988644
No 83
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.4e-25 Score=234.34 Aligned_cols=167 Identities=20% Similarity=0.266 Sum_probs=134.0
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------------cccce
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 382 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------------a~~G~ 382 (835)
|++++|+++.|+++.+ ++||++.+| ++++|+||||+||||||++| |+..+- .+.-.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSG-EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 6889999999987665 999999999 99999999999999999999 554321 01123
Q ss_pred eecCCCCC--CchH----------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEE
Q 003258 383 YLPAKNHP--RLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (835)
Q Consensus 383 ~vP~~~~~--~i~~----------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLL 437 (835)
|+|+.... .+++ ++.++..+|+.+..++.+.+|||||+ |++++++++.+|+++||
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILL 161 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 55655311 1122 22345556666667889999999999 79999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||||+|+|+.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 DEPt~~LD~~~~~~l~~-~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~ 218 (241)
T PRK10895 162 DEPFAGVDPISVIDIKR-IIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH 218 (241)
T ss_pred cCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEee
Confidence 99999999999999988 55666667899999999985 7789999999999988653
No 84
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.9e-25 Score=238.53 Aligned_cols=167 Identities=16% Similarity=0.115 Sum_probs=134.3
Q ss_pred eEEEeeeeeecC-Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cccce
Q 003258 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (835)
Q Consensus 326 ~l~~~~ls~~y~-~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G~ 382 (835)
+++++|+++.|+ +..+ ++||++.+| ++++|+|||||||||||++| |++.+. .+.-.
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEG-SKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 688999999996 4444 999999999 99999999999999999999 554321 01123
Q ss_pred eecCCCC---CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEE
Q 003258 383 YLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (835)
Q Consensus 383 ~vP~~~~---~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLL 437 (835)
|+|+... ...++ +..++..+|+....++.+.+|||||+ |++++++++.+|+++||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llll 162 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVL 162 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 5666531 11111 23345667887788999999999999 89999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 003258 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (835)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el-~~~~~~~~~~~n~~v~~~ 494 (835)
||||+|||+.....+.. ++..+.+.|+|+|++||+++. ..+|++++.+.+|.+..+
T Consensus 163 DEPt~~LD~~~~~~l~~-~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~ 219 (274)
T PRK13647 163 DEPMAYLDPRGQETLME-ILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAE 219 (274)
T ss_pred ECCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999 555565568999999999884 579999999999988754
No 85
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.92 E-value=5.5e-25 Score=231.74 Aligned_cols=166 Identities=20% Similarity=0.240 Sum_probs=131.9
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------------ccccee
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------------a~~G~~ 383 (835)
++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. ...-.|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPG-EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 357899999987655 999999999 99999999999999999999 554321 011235
Q ss_pred ecCCCCC--CchH-------------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHc
Q 003258 384 LPAKNHP--RLPW-------------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV 429 (835)
Q Consensus 384 vP~~~~~--~i~~-------------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la 429 (835)
+|+.... .+.+ +.+++..+|+....++.+++|||||+ |++++++++
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 159 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA 159 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHh
Confidence 6665310 0111 22345667777778899999999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
.+|+++||||||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 160 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 160 TDPKLLLLDEPAAGLNPEETEELAE-LIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEee
Confidence 9999999999999999999999999 44555556889999999987 5678999999999987643
No 86
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.5e-25 Score=235.42 Aligned_cols=167 Identities=17% Similarity=0.219 Sum_probs=133.7
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------ccccee
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G~~ 383 (835)
|++++|++++|+++.+ ++||++.+| ++++|+|||||||||||++| |++.+- .+.-.|
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTG-KITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 6889999999987665 999999999 99999999999999999999 554320 111235
Q ss_pred ecCCCCC--CchH-------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 384 LPAKNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 384 vP~~~~~--~i~~-------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
+|+.... .+++ +..++..+|+....++.+.+|||||+ |++++++++.+|+++
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 160 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVV 160 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 5655311 1111 12334556777778899999999999 899999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||||||+|+|+.....+...+ ..+.+.+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 161 llDEP~~~LD~~~~~~l~~~l-~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 219 (255)
T PRK11231 161 LLDEPTTYLDINHQVELMRLM-RELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQ 219 (255)
T ss_pred EEcCCcccCCHHHHHHHHHHH-HHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEE
Confidence 999999999999999999944 456656889999999987 6789999999999987643
No 87
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.92 E-value=3.2e-25 Score=230.04 Aligned_cols=159 Identities=24% Similarity=0.335 Sum_probs=126.4
Q ss_pred EeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------h-------cccceeecCCCCC-
Q 003258 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M-------SKAGLYLPAKNHP- 390 (835)
Q Consensus 329 ~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------m-------a~~G~~vP~~~~~- 390 (835)
++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ . .+...|+|+....
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPG-EFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred cccceeEECCEEeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 5789999987655 999999999 99999999999999999999 65432 1 1112356655311
Q ss_pred ---CchH-------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCC
Q 003258 391 ---RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (835)
Q Consensus 391 ---~i~~-------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~ 441 (835)
..+. +.+++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 160 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF 160 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 0111 22345666777778899999999999 899999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCC
Q 003258 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA 489 (835)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~ 489 (835)
+|||+.....+...+.+ +.+.+.|+|++||+.+ +..+|++++.+.++
T Consensus 161 ~~LD~~~~~~l~~~l~~-~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 161 AGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred ccCCHHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc
Confidence 99999999999995554 5556889999999987 56789999888775
No 88
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.8e-25 Score=247.99 Aligned_cols=168 Identities=20% Similarity=0.240 Sum_probs=135.4
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----------------cccceeec
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-----------------a~~G~~vP 385 (835)
+++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+.-.|+|
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEG-EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 5789999999987665 999999999 99999999999999999999 554321 01123566
Q ss_pred CCCC--CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCC
Q 003258 386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (835)
Q Consensus 386 ~~~~--~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~ 441 (835)
+... ..+++ +.+++..+|+.+..++.+++|||||+ |++++++++.+|++|||||||
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt 161 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 6531 11122 22346677888888999999999999 899999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+|||+..+..+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 162 s~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~ 215 (369)
T PRK11000 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV 215 (369)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999555444445889999999987 6779999999999988644
No 89
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.92 E-value=4.1e-25 Score=230.25 Aligned_cols=165 Identities=23% Similarity=0.321 Sum_probs=130.2
Q ss_pred EEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------------------ccccee
Q 003258 327 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLY 383 (835)
Q Consensus 327 l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------------------a~~G~~ 383 (835)
|+++||++.|++ +++ ++||++.+| ++++|+||||||||||||+| |+..+. .+.-.+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKG-EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 357899999976 555 999999999 99999999999999999999 554321 011235
Q ss_pred ecCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeC
Q 003258 384 LPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (835)
Q Consensus 384 vP~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDE 439 (835)
+|+.... ..++ +++++..+|+.+..++.+++||+||+ |++++++++.+|+++||||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 159 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE 159 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 5554311 1111 22345667777778899999999999 8999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 440 p~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 160 P~~~LD~~~~~~l~~-~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 213 (220)
T cd03263 160 PTSGLDPASRRAIWD-LILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCI 213 (220)
T ss_pred CCCCCCHHHHHHHHH-HHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 999999999999999 5555555 589999999988 5578999999999987654
No 90
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.7e-25 Score=237.91 Aligned_cols=167 Identities=20% Similarity=0.188 Sum_probs=133.0
Q ss_pred eEEEeeeeeecC-Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------------cccc
Q 003258 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAG 381 (835)
Q Consensus 326 ~l~~~~ls~~y~-~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------------a~~G 381 (835)
|++++||++.|+ +..+ ++||++.+| ++++|+||||+|||||||+| |++.+. ....
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKG-EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 578999999995 3434 999999999 99999999999999999999 554321 0112
Q ss_pred eeecCCCC---CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEE
Q 003258 382 LYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (835)
Q Consensus 382 ~~vP~~~~---~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlL 436 (835)
.++|+... ...++ +..++..+|+....++.+..||+||+ |+.++++++.+|+++|
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLI 159 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 35555431 11111 22345567777788899999999999 8999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
|||||+|||+.....+.. ++..+.+.|.|+|++||+.+....|+++..+.+|.+...
T Consensus 160 LDEPt~gLD~~~~~~l~~-~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~ 216 (274)
T PRK13644 160 FDEVTSMLDPDSGIAVLE-RIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLE 216 (274)
T ss_pred EeCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999998 555566668999999999886577999999999988654
No 91
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.92 E-value=3.4e-25 Score=241.35 Aligned_cols=183 Identities=21% Similarity=0.294 Sum_probs=145.9
Q ss_pred eEEEeeeeeecCCc-ee-ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCC---------------
Q 003258 326 EMTVGSLSKGISDF-PV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN--------------- 388 (835)
Q Consensus 326 ~l~~~~ls~~y~~~-~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~--------------- 388 (835)
+++++||+|.||+. .+ ++|+++.+| ++++|+||||||||||||+| +|+..|.+|
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~G-ef~vllGPSGcGKSTlLr~I--------AGLe~~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDG-EFVVLLGPSGCGKSTLLRMI--------AGLEEPTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCCceEEECCEECCCCChh
Confidence 68899999999997 66 999999999 99999999999999999999 555444444
Q ss_pred -------------CCCchHHH---------------------HHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCc
Q 003258 389 -------------HPRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (835)
Q Consensus 389 -------------~~~i~~~d---------------------~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~ 433 (835)
.+.+++++ ++...+++++.+++++++|||||+ |++++++++.+|+
T Consensus 74 ~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~ 153 (338)
T COG3839 74 KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPK 153 (338)
T ss_pred HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCC
Confidence 12333333 446677889999999999999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecch-hHHhhhcccccccCCceeecccccccchhcccCCCCCc
Q 003258 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-DLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDS 512 (835)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~-el~~~~~~~~~~~n~~v~~~~~~l~~~Y~l~~g~~~~s 512 (835)
++|||||.|+||..-+..+..-+.+.-.+.+.|+|++|||. |...+++++..+.+|.+.-. ++-...|. ..
T Consensus 154 v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~-g~p~ely~-------~P 225 (338)
T COG3839 154 VFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQV-GTPLELYE-------RP 225 (338)
T ss_pred EEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeec-CChHHHhh-------Cc
Confidence 99999999999999999988855553344588999999995 56679999999988877543 22223332 22
Q ss_pred hHHHHHHHcCCCH
Q 003258 513 NALNIAKSIGFDR 525 (835)
Q Consensus 513 ~a~~ia~~~g~~~ 525 (835)
....+|...|.|+
T Consensus 226 ~n~fVA~FiG~p~ 238 (338)
T COG3839 226 ANLFVAGFIGSPP 238 (338)
T ss_pred cchhhhhhcCChh
Confidence 3356788888775
No 92
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.92 E-value=4.4e-25 Score=245.80 Aligned_cols=168 Identities=21% Similarity=0.240 Sum_probs=137.7
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----------------cccceeec
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-----------------a~~G~~vP 385 (835)
+|+++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...++|
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKG-EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 6899999999988665 899999999 99999999999999999999 554321 11123556
Q ss_pred CCCC--CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCC
Q 003258 386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (835)
Q Consensus 386 ~~~~--~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~ 441 (835)
++.. ..+++ +++++..+|+.+..++.+.+|||||+ |++++++++.+|+++|||||+
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~ 162 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL 162 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 5531 11122 33456777888889999999999999 899999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++||+..+..+...+.+...+.+.|+|++|||.+ ...+|+++..+.+|.+...
T Consensus 163 s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~ 216 (353)
T TIGR03265 163 SALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQV 216 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999665554556899999999987 5689999999999988654
No 93
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.9e-25 Score=233.23 Aligned_cols=168 Identities=20% Similarity=0.230 Sum_probs=131.8
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh--------------------hcccc
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSKAG 381 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~--------------------ma~~G 381 (835)
.|++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+ ..+.-
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQG-EIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 47899999999987655 999999999 99999999999999999999 55432 01112
Q ss_pred eeecCCCCC--CchHHH-------------------HHHHHc-CCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEe
Q 003258 382 LYLPAKNHP--RLPWFD-------------------LILADI-GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (835)
Q Consensus 382 ~~vP~~~~~--~i~~~d-------------------~i~~~i-g~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLD 438 (835)
.|+|+.... .+++++ .++..+ +..+..++.+++||+||+ |++++++++.+|+++|||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlD 162 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD 162 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEc
Confidence 355554311 112222 223334 345556788999999999 899999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 439 Ep~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|||+|+|+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 163 EPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (237)
T PRK11614 163 EPSLGLAPIIIQQIFD-TIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLE 218 (237)
T ss_pred CccccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEee
Confidence 9999999999999998 55556666899999999986 7889999999999987644
No 94
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.92 E-value=6.3e-25 Score=234.85 Aligned_cols=168 Identities=18% Similarity=0.188 Sum_probs=133.4
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------ccccee
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G~~ 383 (835)
|++++|+++.|+++.+ ++||++.+| ++++|+|||||||||||++| |++.+- .+.-.|
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPG-EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 6889999999987655 999999999 99999999999999999999 554321 011235
Q ss_pred ecCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHc------CCCc
Q 003258 384 LPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV------SRES 433 (835)
Q Consensus 384 vP~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la------~~~~ 433 (835)
+|+.... .+++ +..++..+|+.+..++.+.+|||||+ |++++++++ .+|+
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~ 160 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPR 160 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence 5655321 1111 22345667777778899999999999 899999999 5999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 161 WLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEee
Confidence 999999999999999999999555443266889999999987 5679999999999987643
No 95
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=1.4e-25 Score=222.76 Aligned_cols=168 Identities=23% Similarity=0.333 Sum_probs=142.8
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hcccc-
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG- 381 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~~G- 381 (835)
+++.++|+.|+|+++.| ++||++.+| +++++.||||+||||.+.++ |++.+ .|+.|
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~G-EiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSG-EIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCC-cEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 46889999999998776 999999999 99999999999999999998 66543 23444
Q ss_pred eeecCCCCC--CchH-----------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 382 LYLPAKNHP--RLPW-----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 382 ~~vP~~~~~--~i~~-----------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
.|.||+.+. .+++ .+.++..+++.+..+++-.+||||++ |+-+|++++.+|+++
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fi 161 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFI 161 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEE
Confidence 366766521 1222 33556777777888899999999999 788999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecc-hhHHhhhcccccccCCceeec
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY-ADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~-~el~~~~~~~~~~~n~~v~~~ 494 (835)
||||||+|.||..-..|-. ++.+|.++|.-|++|-|. .|...+||+.+.+..|++.+.
T Consensus 162 LLDEPFAGVDPiaV~dIq~-iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~ 220 (243)
T COG1137 162 LLDEPFAGVDPIAVIDIQR-IIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAE 220 (243)
T ss_pred EecCCccCCCchhHHHHHH-HHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEec
Confidence 9999999999999999998 999999999999999999 568889999999999998765
No 96
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.92 E-value=3.6e-25 Score=242.08 Aligned_cols=158 Identities=22% Similarity=0.291 Sum_probs=126.3
Q ss_pred ecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c-----------ccceeecCCCCC--C
Q 003258 335 GISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-----------KAGLYLPAKNHP--R 391 (835)
Q Consensus 335 ~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a-----------~~G~~vP~~~~~--~ 391 (835)
.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+. + +.-.++|+.... .
T Consensus 2 ~y~~~~~l~~vs~~i~~G-e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREG-EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred eeCCeeEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 4555444 999999999 99999999999999999999 665321 0 112356665311 1
Q ss_pred chH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhH
Q 003258 392 LPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (835)
Q Consensus 392 i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~ 449 (835)
+++ ++.++..+|+.+..++.+++|||||+ |++++++++.+|++|||||||+||||...
T Consensus 81 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 160 (302)
T TIGR01188 81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160 (302)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 111 23456777888888999999999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 450 ~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
..+.. ++..+.+.|.|+|++||+++ +..+|+++..+.+|++...
T Consensus 161 ~~l~~-~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~ 205 (302)
T TIGR01188 161 RAIWD-YIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAE 205 (302)
T ss_pred HHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999 55556666899999999987 6679999999999988754
No 97
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.92 E-value=7e-25 Score=229.54 Aligned_cols=166 Identities=17% Similarity=0.173 Sum_probs=129.1
Q ss_pred eEEEeeeeeecCCc----ee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------------------
Q 003258 326 EMTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (835)
Q Consensus 326 ~l~~~~ls~~y~~~----~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------------- 377 (835)
|++++||++.|++. .+ ++||++.+| ++++|+|||||||||||++| |++.+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKG-ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKI 79 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHH
Confidence 57889999999764 44 999999999 99999999999999999999 554320
Q ss_pred -cccceeecCCCC----CCchHHH-----------------------HHHHHcCCc-ccccCCcccchHHHH-HHHHHHH
Q 003258 378 -SKAGLYLPAKNH----PRLPWFD-----------------------LILADIGDH-QSLEQNLSTFSGHIS-RIVDILE 427 (835)
Q Consensus 378 -a~~G~~vP~~~~----~~i~~~d-----------------------~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~~~ 427 (835)
.+.-.|+|+... ..+++.+ .++..+++. ...++.+.+|||||+ |++++++
T Consensus 80 ~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 159 (228)
T cd03257 80 RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA 159 (228)
T ss_pred hhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHH
Confidence 011235555531 0111111 234556664 467889999999999 8999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCcee
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~ 492 (835)
++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|.+.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEE
Confidence 999999999999999999999999999555543444889999999988 45689999999998764
No 98
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=5e-25 Score=232.27 Aligned_cols=166 Identities=16% Similarity=0.212 Sum_probs=134.4
Q ss_pred eEEEeeeeeecCCc----e--e-ccceeecCCceEEEEEcCCCCChhhHHhhHHhh-h-------h--------------
Q 003258 326 EMTVGSLSKGISDF----P--V-PIDIKVECETRVVVITGPNTGGKTASMKTLGLA-S-------L-------------- 376 (835)
Q Consensus 326 ~l~~~~ls~~y~~~----~--v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli-~-------~-------------- 376 (835)
||++++|+|.|... + + ++||++++| ++++|+|++|+|||||+|++..+ . +
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~G-eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKG-EIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCC-cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHH
Confidence 68899999999761 2 2 899999999 99999999999999999999221 1 1
Q ss_pred --hcccceeecCCCC--CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcC
Q 003258 377 --MSKAGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (835)
Q Consensus 377 --ma~~G~~vP~~~~--~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~ 430 (835)
..+.| .+++..+ ..-++ +..++..+|+.+..+++++.|||||| |+++|++++.
T Consensus 80 ~~R~~IG-MIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~ 158 (339)
T COG1135 80 QLRQKIG-MIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALAN 158 (339)
T ss_pred HHHhhcc-EEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhc
Confidence 01122 3333321 00111 33457889999999999999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHh-cCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 431 RESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~-~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+|.+||.|||||+|||.....|.. ++..+. +.|.|++++||.++ ++.+|++...+++|.+...
T Consensus 159 ~P~iLL~DEaTSALDP~TT~sIL~-LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~ 223 (339)
T COG1135 159 NPKILLCDEATSALDPETTQSILE-LLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEE 223 (339)
T ss_pred CCCEEEecCccccCChHHHHHHHH-HHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEe
Confidence 999999999999999999999999 555555 55889999999999 7889999999999988654
No 99
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.7e-25 Score=244.58 Aligned_cols=169 Identities=15% Similarity=0.154 Sum_probs=136.2
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c----------ccceee
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S----------KAGLYL 384 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a----------~~G~~v 384 (835)
.+|+++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- . +.-.++
T Consensus 5 ~~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 5 NFVVLKNITKRFGSNTVIDNLNLTIKQG-TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred cEEEEEeEEEEECCeEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 58999999999987664 899999999 99999999999999999999 554321 0 111245
Q ss_pred cCCCC--CCchHH---------------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCC
Q 003258 385 PAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (835)
Q Consensus 385 P~~~~--~~i~~~---------------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp 440 (835)
|++.. ..+++. ++++..+|+.+..++.+++|||||+ |++++++++.+|+++|||||
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP 163 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP 163 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 55431 112222 2345667888888999999999999 89999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 441 ~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++||+..+..+...+.+...+.+.|+|++|||.+ ...+||++..+.+|.+...
T Consensus 164 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~ 218 (351)
T PRK11432 164 LSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQI 218 (351)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999555444455899999999987 5689999999999988754
No 100
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.92 E-value=2e-25 Score=222.42 Aligned_cols=150 Identities=21% Similarity=0.240 Sum_probs=120.5
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchH--------HH
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW--------FD 396 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~--------~d 396 (835)
++++|+++.|++.++ ++||++.+| ++++|+||||+||||||++| +|...|..|...+.. .+
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i--------~G~~~~~~G~v~~~g~~~~~~~~~~ 71 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRG-EVHALLGENGAGKSTLMKIL--------SGLYKPDSGEILVDGKEVSFASPRD 71 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCCeEEEECCEECCcCCHHH
Confidence 357899999987666 999999999 99999999999999999999 887777776332211 11
Q ss_pred HHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003258 397 LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (835)
Q Consensus 397 ~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e 475 (835)
.....++ .+..||+||+ |++++++++.+|+++||||||+|||+.....+.. ++..+.+.+.|+|++||+.+
T Consensus 72 ~~~~~i~-------~~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~-~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 72 ARRAGIA-------MVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK-VIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred HHhcCeE-------EEEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHH
Confidence 1111111 1223999999 8999999999999999999999999999999999 44455666889999999987
Q ss_pred -HHhhhcccccccCCceee
Q 003258 476 -LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 476 -l~~~~~~~~~~~n~~v~~ 493 (835)
+..+|++.+.+.+|++.+
T Consensus 144 ~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 144 EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHhCCEEEEEECCEEEe
Confidence 678899999999887653
No 101
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=5.7e-25 Score=225.85 Aligned_cols=160 Identities=23% Similarity=0.337 Sum_probs=137.3
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC-------------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------------- 389 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~------------- 389 (835)
.++++++|+++||+-.+ ++||++.+| ++++|+||||+||||++++| .|+|.|..|.
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~G-ei~~LIGPNGAGKTTlfNli--------tG~~~P~~G~v~~~G~~it~l~p 73 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPG-EIVGLIGPNGAGKTTLFNLI--------TGFYKPSSGTVIFRGRDITGLPP 73 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCC-eEEEEECCCCCCceeeeeee--------cccccCCCceEEECCcccCCCCH
Confidence 46789999999999665 999999999 99999999999999999999 8888887762
Q ss_pred ------------------CCchHHHH---------------------------------HHHHcCCcccccCCcccchHH
Q 003258 390 ------------------PRLPWFDL---------------------------------ILADIGDHQSLEQNLSTFSGH 418 (835)
Q Consensus 390 ------------------~~i~~~d~---------------------------------i~~~ig~~~~~~~~lstfSgg 418 (835)
..++++++ ++..+|+.+..+...++||+|
T Consensus 74 ~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG 153 (250)
T COG0411 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYG 153 (250)
T ss_pred HHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChh
Confidence 11222222 355678888999999999999
Q ss_pred HH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 419 IS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 419 ~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++ ++.++++++++|.|||||||.+|++|.+...++. ++..+.+ .|.|++++-||+. +..+||+++.+..|.+.++
T Consensus 154 ~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~-~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAe 231 (250)
T COG0411 154 QQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE-LIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE 231 (250)
T ss_pred HhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCccc
Confidence 88 6888899999999999999999999999999999 6666776 5689999999999 6679999999999988765
No 102
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.92 E-value=5.6e-25 Score=229.93 Aligned_cols=166 Identities=19% Similarity=0.228 Sum_probs=132.2
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c--------ccceeecCCC
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S--------KAGLYLPAKN 388 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a--------~~G~~vP~~~ 388 (835)
++++|+++.|+++.+ ++||++.+| ++++|+||||+||||||++| |++.+. . +.-.++|+..
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKN-SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 357899999987665 999999999 99999999999999999999 554321 0 1122455543
Q ss_pred CC--CchHH-----------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHh
Q 003258 389 HP--RLPWF-----------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (835)
Q Consensus 389 ~~--~i~~~-----------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~ 448 (835)
.. .++.. ..++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||+|+|+..
T Consensus 80 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~ 159 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG 159 (223)
T ss_pred CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHH
Confidence 11 11222 2345667887788899999999999 7999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 449 GVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 449 ~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
...+.. ++..+.+.+.++|++||+.+ +..+|++++.+.+|.+...
T Consensus 160 ~~~l~~-~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~ 205 (223)
T TIGR03740 160 IQELRE-LIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQ 205 (223)
T ss_pred HHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEe
Confidence 999999 44455666889999999988 5579999999999987654
No 103
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.4e-24 Score=231.53 Aligned_cols=168 Identities=16% Similarity=0.252 Sum_probs=133.7
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cccc-
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG- 381 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G- 381 (835)
.|++++|+++.|++..+ ++||++.+| ++++|+|||||||||||++| |++.+- .+.+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQ-EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCC-eEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 48999999999987655 999999999 99999999999999999999 554320 0112
Q ss_pred eeecCCCCC--CchHH------------------------------------HHHHHHcCCcccccCCcccchHHHH-HH
Q 003258 382 LYLPAKNHP--RLPWF------------------------------------DLILADIGDHQSLEQNLSTFSGHIS-RI 422 (835)
Q Consensus 382 ~~vP~~~~~--~i~~~------------------------------------d~i~~~ig~~~~~~~~lstfSgg~~-rl 422 (835)
.|+|+.... .+++. ..++..+|+.+..++++.+||+||+ |+
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 162 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRL 162 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHH
Confidence 245655311 11111 2234556777778899999999999 89
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 423 ~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++++++.+|+++||||||+|||+.....+.. ++..+.+ .+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 163 EIARCMVTQPEILMLDEPAAGLNPKETKELDE-LIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH-HHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEec
Confidence 99999999999999999999999999999998 5555555 4889999999987 5678999999999988643
No 104
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=8e-25 Score=231.14 Aligned_cols=166 Identities=20% Similarity=0.261 Sum_probs=130.3
Q ss_pred EEEeeeeeecCC-cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh----------------------ccc
Q 003258 327 MTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKA 380 (835)
Q Consensus 327 l~~~~ls~~y~~-~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m----------------------a~~ 380 (835)
++++||+++|++ +.+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPG-EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 357899999986 555 999999999 99999999999999999999 554320 011
Q ss_pred ceeecCCCCC--CchH-----------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHH
Q 003258 381 GLYLPAKNHP--RLPW-----------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILEL 428 (835)
Q Consensus 381 G~~vP~~~~~--~i~~-----------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~l 428 (835)
-.|+|+.... .+++ +..++..+|+....++.+.+|||||+ |+++++++
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence 2356655311 1111 12335566777778899999999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHh-cCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 429 a~~~~LlLLDEp~~glDp~~~~aL~~all~~l~-~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+.+|+++||||||+|||+.....+.. ++..+. +.|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 160 MQQPKLILADEPVASLDPASSRQVMD-LLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD 226 (241)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 99999999999999999999999999 444554 45889999999987 5569999999999987643
No 105
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.92 E-value=5.5e-25 Score=240.89 Aligned_cols=160 Identities=21% Similarity=0.297 Sum_probs=137.9
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC-------------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------------- 389 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~------------- 389 (835)
..++++||+|.||+..+ ++|+++.+| ++++|+||+||||||+||+| +|+.-|.+|.
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~G-ef~~lLGPSGcGKTTlLR~I--------AGfe~p~~G~I~l~G~~i~~lpp 74 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKG-EFVTLLGPSGCGKTTLLRMI--------AGFEQPSSGEILLDGEDITDVPP 74 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCC-cEEEEECCCCCCHHHHHHHH--------hCCCCCCCceEEECCEECCCCCh
Confidence 46889999999997665 899999999 99999999999999999999 5555555541
Q ss_pred ---------------CCchH----------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCC
Q 003258 390 ---------------PRLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 390 ---------------~~i~~----------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~ 431 (835)
+.+++ +.+++..+++.+..+++++.|||||+ |+++|++++.+
T Consensus 75 ~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~ 154 (352)
T COG3842 75 EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPE 154 (352)
T ss_pred hhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcC
Confidence 22223 33457778889999999999999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
|.++|||||.++||..-+..+...+.+...+.|.|+|++|||.+ -..++|++..+.+|.++-
T Consensus 155 P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q 217 (352)
T COG3842 155 PKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQ 217 (352)
T ss_pred cchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceee
Confidence 99999999999999999999999787777788999999999976 556899999999998763
No 106
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.92 E-value=1e-24 Score=230.73 Aligned_cols=166 Identities=22% Similarity=0.210 Sum_probs=132.0
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------------cccce
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 382 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------------a~~G~ 382 (835)
|++++|+++.|++..+ ++||++.+| ++++|+||||+|||||||+| |+..+- .+.-.
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPG-ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 6889999999987655 999999999 99999999999999999999 554321 01112
Q ss_pred eecCCCCC--CchH-----------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcC
Q 003258 383 YLPAKNHP--RLPW-----------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (835)
Q Consensus 383 ~vP~~~~~--~i~~-----------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~ 430 (835)
|+|+.... .+++ ++.++..+|+....++.+++|||||+ |++++++++.
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~ 160 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQ 160 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 44544310 0111 22345667777778899999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 ~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 161 DPKLLLLDEPVAGMTDEETEKTAE-LLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred CCCEEEecCCccCCCHHHHHHHHH-HHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEee
Confidence 999999999999999999999999 4445555 689999999987 5679999999999987643
No 107
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=7.7e-25 Score=224.69 Aligned_cols=169 Identities=18% Similarity=0.187 Sum_probs=136.3
Q ss_pred CeEEEeeeeeecCCce----e--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------------
Q 003258 325 SEMTVGSLSKGISDFP----V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 377 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~----v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------- 377 (835)
.|++++|+++.|+... + ++||++.+| ++++|+|++|||||||.+++ |+...-
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~G-e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERG-ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCC-CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence 4789999999998765 4 999999999 99999999999999999999 444320
Q ss_pred cccceeecCCCCCCchH-----------------------HHHHHHHcCCcc-cccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 378 SKAGLYLPAKNHPRLPW-----------------------FDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 378 a~~G~~vP~~~~~~i~~-----------------------~d~i~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
.+.--+|+|++...+.. ..+++..+|+.. .+++.+..|||||+ |+++|++++.+|
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P 160 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP 160 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC
Confidence 11112344444222211 245677788764 57899999999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++|+||||++||+.-.+.+.+.+.+.-.+++.|.|++|||.. +..+|+++..+.+|.+...
T Consensus 161 klLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 161 KLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred CEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEe
Confidence 9999999999999999999999555554567889999999988 6679999999999988654
No 108
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1e-24 Score=234.17 Aligned_cols=169 Identities=15% Similarity=0.190 Sum_probs=134.7
Q ss_pred CCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cccc
Q 003258 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G 381 (835)
+.+++++||++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+..+. .+..
T Consensus 9 ~~~l~i~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 9 DTTFALRNVSFRVPGRTLLHPLSLTFPAG-KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred CceEEEeeEEEEECCEEEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 468999999999987655 999999999 99999999999999999999 654321 0112
Q ss_pred eeecCCCCC--CchH-------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCc
Q 003258 382 LYLPAKNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (835)
Q Consensus 382 ~~vP~~~~~--~i~~-------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~ 433 (835)
.|+|+.... .+.+ ++.++..+|+.+.+++.+.+|||||+ |++++++++.+|+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ 167 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSR 167 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 355654210 1111 23345667777778899999999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 434 LVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++||||||+|||+.....+.. ++..+.+ .+.++|++||+.+ +..+|++++.+.+|++...
T Consensus 168 lllLDEPt~~LD~~~~~~~~~-~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~ 229 (265)
T PRK10575 168 CLLLDEPTSALDIAHQVDVLA-LVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQ 229 (265)
T ss_pred EEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 999999999999999999999 4445544 4889999999987 5679999999999987643
No 109
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=8.4e-25 Score=237.48 Aligned_cols=167 Identities=15% Similarity=0.130 Sum_probs=133.1
Q ss_pred eEEEeeeeeecCC-----c-ee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------------
Q 003258 326 EMTVGSLSKGISD-----F-PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 377 (835)
Q Consensus 326 ~l~~~~ls~~y~~-----~-~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------- 377 (835)
++.++||++.|++ + .+ ++||++.+| ++++|+||||+|||||||+| |++.+-
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEG-SFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 4789999999974 2 33 999999999 99999999999999999999 554320
Q ss_pred ---cccceeecCCCC---CCchHH---------------------HHHHHHcCCc-ccccCCcccchHHHH-HHHHHHHH
Q 003258 378 ---SKAGLYLPAKNH---PRLPWF---------------------DLILADIGDH-QSLEQNLSTFSGHIS-RIVDILEL 428 (835)
Q Consensus 378 ---a~~G~~vP~~~~---~~i~~~---------------------d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~~~l 428 (835)
.+.-.++|+... ....+. ..++..+|+. ...++.+++|||||+ |+++++++
T Consensus 81 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 011235666531 111222 2345667776 567899999999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 429 a~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+.+|+++||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQ-LFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999988 55666666899999999988 5689999999999988654
No 110
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.1e-24 Score=230.66 Aligned_cols=167 Identities=17% Similarity=0.199 Sum_probs=132.1
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------ccccee
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G~~ 383 (835)
+++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGG-AIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 5789999999987655 999999999 99999999999999999999 554321 011235
Q ss_pred ecCCCCC-CchH-----------------HHHHHHHcCCc-ccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCC
Q 003258 384 LPAKNHP-RLPW-----------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (835)
Q Consensus 384 vP~~~~~-~i~~-----------------~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~g 443 (835)
+|+.... ...+ +..++..+|+. +..++.+..|||||+ |++++++++.+|+++||||||+|
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 161 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSA 161 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 5555310 0011 23356667775 467889999999999 89999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 444 TDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 444 lDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||+.....+.. ++..+.+ .|.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 162 LD~~~~~~l~~-~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (241)
T PRK14250 162 LDPTSTEIIEE-LIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEY 213 (241)
T ss_pred CCHHHHHHHHH-HHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999988 4445554 5899999999987 5679999999999987643
No 111
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=9.9e-25 Score=235.99 Aligned_cols=167 Identities=19% Similarity=0.211 Sum_probs=133.4
Q ss_pred eEEEeeeeeecCC---c-ee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------ccc
Q 003258 326 EMTVGSLSKGISD---F-PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (835)
Q Consensus 326 ~l~~~~ls~~y~~---~-~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~ 380 (835)
|++++||++.|++ . .+ ++||++.+| ++++|+||||||||||||+| |++.+. .+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQG-EWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 7889999999964 2 33 999999999 99999999999999999999 554321 011
Q ss_pred ceeecCCCC---CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 381 GLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 381 G~~vP~~~~---~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
..++|+... ...++ +..++..+|+.+..++.+.+|||||+ |++++++++.+|+++
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lL 162 (279)
T PRK13650 83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKII 162 (279)
T ss_pred ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 235555431 11111 23456677888888999999999999 899999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
||||||+|||+.....+.. ++..+.+ .|.|+|++||+.+...+|++++.+.+|++..+
T Consensus 163 lLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~ 221 (279)
T PRK13650 163 ILDEATSMLDPEGRLELIK-TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVEST 221 (279)
T ss_pred EEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999998 5555554 58999999999885578999999999988754
No 112
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=8.9e-25 Score=237.39 Aligned_cols=167 Identities=17% Similarity=0.151 Sum_probs=133.3
Q ss_pred eEEEeeeeeecCCc------ee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------------
Q 003258 326 EMTVGSLSKGISDF------PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 377 (835)
Q Consensus 326 ~l~~~~ls~~y~~~------~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------- 377 (835)
|++++||++.|++. .+ ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~G-e~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKG-SYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCC-CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccH
Confidence 68899999999732 33 999999999 99999999999999999999 554321
Q ss_pred ---cccceeecCCCC---CCchH---------------------HHHHHHHcCCc-ccccCCcccchHHHH-HHHHHHHH
Q 003258 378 ---SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILEL 428 (835)
Q Consensus 378 ---a~~G~~vP~~~~---~~i~~---------------------~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~~~l 428 (835)
.+...++|+... ...++ +..++..+|+. +..++.+.+|||||+ |+++++++
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 011235665431 01111 22345666775 467899999999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 429 a~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+.+|+++||||||+|||+..+..+.. ++..+.+.|.|||++|||++ +..+|++++.+.+|.+.++
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~-~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~ 225 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQ-LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISC 225 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999998 66667666899999999988 5579999999999998765
No 113
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=9.6e-25 Score=238.78 Aligned_cols=167 Identities=16% Similarity=0.160 Sum_probs=134.5
Q ss_pred eEEEeeeeeecCCc------ee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------------
Q 003258 326 EMTVGSLSKGISDF------PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 377 (835)
Q Consensus 326 ~l~~~~ls~~y~~~------~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------- 377 (835)
+|+++||++.|++. .+ ++||++.+| ++++|+|||||||||||++| |++.+.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~G-e~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQG-EFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccc
Confidence 37899999999752 34 999999999 99999999999999999999 554320
Q ss_pred -----------------------cccceeecCCCCCC---chH---------------------HHHHHHHcCCc-cccc
Q 003258 378 -----------------------SKAGLYLPAKNHPR---LPW---------------------FDLILADIGDH-QSLE 409 (835)
Q Consensus 378 -----------------------a~~G~~vP~~~~~~---i~~---------------------~d~i~~~ig~~-~~~~ 409 (835)
.+.-.|+|+..... ..+ +.+++..+|+. +..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 01113666652111 111 23456777885 6789
Q ss_pred CCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccccc
Q 003258 410 QNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE 487 (835)
Q Consensus 410 ~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~ 487 (835)
+++.+|||||+ |+++|++++.+|+++||||||+|||+.....+.. ++..+.+.|.|+|++|||.+ +..+|++++.+.
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~ 239 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILE-IFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFK 239 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEE
Confidence 99999999999 8999999999999999999999999999999998 55666667899999999987 678999999999
Q ss_pred CCceeec
Q 003258 488 NAATEFS 494 (835)
Q Consensus 488 n~~v~~~ 494 (835)
+|.+..+
T Consensus 240 ~G~i~~~ 246 (305)
T PRK13651 240 DGKIIKD 246 (305)
T ss_pred CCEEEEE
Confidence 9988755
No 114
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.1e-24 Score=235.76 Aligned_cols=168 Identities=19% Similarity=0.158 Sum_probs=134.0
Q ss_pred CeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------ccc
Q 003258 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (835)
Q Consensus 325 ~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~ 380 (835)
.|++++||++.|++ +++ ++||++.+| ++++|+||||+||||||++| |++.+- .+.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEG-EWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 47899999999974 334 999999999 99999999999999999999 554321 111
Q ss_pred ceeecCCCC---CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 381 GLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 381 G~~vP~~~~---~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
-.|+|+... ....+ +.+++..+|+.+.+++.+.+|||||+ |++++++++.+|+||
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 162 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDII 162 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 235555421 11111 23456667888889999999999999 899999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
||||||+|||+.....|.. ++..+.+ .+.|+|++||+++....|+++..+.+|.+..+
T Consensus 163 lLDEPt~gLD~~~~~~l~~-~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~ 221 (279)
T PRK13635 163 ILDEATSMLDPRGRREVLE-TVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEE 221 (279)
T ss_pred EEeCCcccCCHHHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 9999999999999999999 5555555 48899999999886567999999999988654
No 115
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.92 E-value=4.6e-25 Score=231.05 Aligned_cols=163 Identities=17% Similarity=0.230 Sum_probs=126.9
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhccccee--------ecCCC---CCCc
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLY--------LPAKN---HPRL 392 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma~~G~~--------vP~~~---~~~i 392 (835)
+.++|++++|+++++ ++||++.+| ++++|+||||||||||+++| |++.+- .|.. .+... ...+
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~~~~~~~~~~~~~ 99 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRG-ERIGLIGRNGAGKSTLLRLLAGIYPPD--SGTVTVRGRVSSLLGLGGGFNPEL 99 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEchhhcccccCCCCC
Confidence 567899999998876 999999999 99999999999999999999 444321 1100 00000 0011
Q ss_pred hH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHH
Q 003258 393 PW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 450 (835)
Q Consensus 393 ~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~ 450 (835)
++ +..++..+|+.+..++.++.|||||+ |++++++++.+|+++||||||+|||+....
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~ 179 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQE 179 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 11 12344556777778899999999999 799999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 451 ALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 451 aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
.+...+.+ +.+.+.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 180 ~~~~~l~~-~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 180 KCQRRLRE-LLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred HHHHHHHH-HHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99995554 4455889999999987 567899999999887653
No 116
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=1.1e-24 Score=226.66 Aligned_cols=163 Identities=23% Similarity=0.225 Sum_probs=128.4
Q ss_pred CCCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------h---------ccccee
Q 003258 323 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M---------SKAGLY 383 (835)
Q Consensus 323 g~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------m---------a~~G~~ 383 (835)
+..|+.++|++++|+++.+ ++||++.+| ++++|+||||||||||||+| |+..+ . .+...|
T Consensus 8 ~~~~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 8 APPLLAAHALAFSRNEEPVFGPLDFHVDAG-EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred CcceEEEeeEEEecCCceeeecceEEECCC-CEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 3468999999999987655 999999999 99999999999999999999 55432 1 011235
Q ss_pred ecCCCCC--CchHH------------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCC
Q 003258 384 LPAKNHP--RLPWF------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (835)
Q Consensus 384 vP~~~~~--~i~~~------------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~ 442 (835)
+|+.... .++.. ..++..+|+....++.+.+||+||+ |++++++++.+|+++||||||+
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYA 166 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 5544311 11222 2345566777778899999999999 8999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccccc
Q 003258 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE 487 (835)
Q Consensus 443 glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~ 487 (835)
|||+.....+.. ++..+.+.++|+|++||+.+ +..+|++.+.+.
T Consensus 167 ~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~ 211 (214)
T PRK13543 167 NLDLEGITLVNR-MISAHLRGGGAALVTTHGAYAAPPVRTRMLTLE 211 (214)
T ss_pred cCCHHHHHHHHH-HHHHHHhCCCEEEEEecChhhhhhhcceEEEEe
Confidence 999999999988 55555666899999999987 667888876654
No 117
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.92 E-value=9.8e-25 Score=232.46 Aligned_cols=166 Identities=20% Similarity=0.256 Sum_probs=131.1
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c-ccceeecCCCCC--C
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-KAGLYLPAKNHP--R 391 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a-~~G~~vP~~~~~--~ 391 (835)
.|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- . ..-.|+|+.... .
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~G-e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~ 81 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPG-KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTT 81 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccc
Confidence 37899999999987665 999999999 99999999999999999999 554331 1 112355655311 1
Q ss_pred c--hH--------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHH
Q 003258 392 L--PW--------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALAT 454 (835)
Q Consensus 392 i--~~--------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~ 454 (835)
+ .+ +..++..+|+.+.+++++.+||+||+ |++++++++.+|+++||||||+|||+.....+..
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 161 (251)
T PRK09544 82 LPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYD 161 (251)
T ss_pred cChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 1 11 22346677888888999999999999 8999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCcee
Q 003258 455 SILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (835)
Q Consensus 455 all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~ 492 (835)
.+.+...+.+.|+|++||+.+ +..+|++++.+.+ .+.
T Consensus 162 ~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~ 199 (251)
T PRK09544 162 LIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HIC 199 (251)
T ss_pred HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceE
Confidence 554433334889999999987 5678999888865 443
No 118
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=8.3e-25 Score=226.65 Aligned_cols=163 Identities=21% Similarity=0.333 Sum_probs=129.0
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------------------cccceeec
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------------------a~~G~~vP 385 (835)
++++|+++.|++..+ ++||++.+| +++|+|||||||||||++| |++.+. .+.-.++|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG--MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC--cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 357899999987655 999999997 8999999999999999999 554320 11123566
Q ss_pred CCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCC
Q 003258 386 AKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (835)
Q Consensus 386 ~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~ 441 (835)
+.... .+++ ++.++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 158 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 65421 1111 12345566777777899999999999 899999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..++++++.+.+|.+..
T Consensus 159 ~~LD~~~~~~l~~-~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 159 AGLDPEERIRFRN-LLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred ccCCHHHHHHHHH-HHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999998 5566665 489999999988 557899999999987653
No 119
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.92 E-value=8.2e-25 Score=229.67 Aligned_cols=166 Identities=25% Similarity=0.267 Sum_probs=129.3
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------------ccccee
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 383 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------------a~~G~~ 383 (835)
|+++||++.|+++++ ++||++.+| ++++|+|||||||||||++| |++.+. .+.-.|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKG-EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 357899999987665 999999999 99999999999999999999 554321 111235
Q ss_pred ecCCCCC--CchHH------------------HHHHHHcC-CcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCC
Q 003258 384 LPAKNHP--RLPWF------------------DLILADIG-DHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (835)
Q Consensus 384 vP~~~~~--~i~~~------------------d~i~~~ig-~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~ 441 (835)
+|+.... .+.+. +.++..++ ..+..++.+++|||||+ |++++++++.+|+++||||||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt 159 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 6665421 11221 22333343 34567889999999999 899999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 442 SGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+|||+.....+...+.+ +.+ .+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 160 ~~LD~~~~~~l~~~l~~-~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~ 213 (230)
T TIGR03410 160 EGIQPSIIKDIGRVIRR-LRAEGGMAILLVEQYLDFARELADRYYVMERGRVVAS 213 (230)
T ss_pred ccCCHHHHHHHHHHHHH-HHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999995554 554 4889999999987 5568999999999987643
No 120
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.1e-24 Score=236.48 Aligned_cols=166 Identities=15% Similarity=0.177 Sum_probs=133.0
Q ss_pred EEEeeeeeecCC-----cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------------------
Q 003258 327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (835)
Q Consensus 327 l~~~~ls~~y~~-----~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------------- 377 (835)
++++||++.|++ ..+ ++||++.+| ++++|+|||||||||||++| |++.+-
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDG-EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 789999999974 234 999999999 99999999999999999999 554321
Q ss_pred cccceeecCCCC---CCchH---------------------HHHHHHHcCCc--ccccCCcccchHHHH-HHHHHHHHcC
Q 003258 378 SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDH--QSLEQNLSTFSGHIS-RIVDILELVS 430 (835)
Q Consensus 378 a~~G~~vP~~~~---~~i~~---------------------~d~i~~~ig~~--~~~~~~lstfSgg~~-rl~~~~~la~ 430 (835)
.+...|+|+... ...++ +..++..+|+. ...++.++.|||||+ |++++++++.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 112246777531 11122 23456667886 567899999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+|++|||||||+|||+.....+.. ++..+.+ .|.|+|++||+++ +..+|+++..+.+|.+..+
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~ 226 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILN-KIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQ 226 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999 5555554 4889999999987 4579999999999988754
No 121
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=9.8e-25 Score=231.00 Aligned_cols=166 Identities=20% Similarity=0.210 Sum_probs=130.8
Q ss_pred EEEeeeeeecCC-cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------ccccee
Q 003258 327 MTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (835)
Q Consensus 327 l~~~~ls~~y~~-~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G~~ 383 (835)
++++||++.|++ ..+ ++||++.+| ++++|+||||+|||||||+| |+..+- ...-.|
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKG-EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 357899999987 554 999999999 99999999999999999999 554321 011235
Q ss_pred ecCCCCC--CchH---------------------HHHHHHHcCCcc--cccCCcccchHHHH-HHHHHHHHcCCCcEEEE
Q 003258 384 LPAKNHP--RLPW---------------------FDLILADIGDHQ--SLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (835)
Q Consensus 384 vP~~~~~--~i~~---------------------~d~i~~~ig~~~--~~~~~lstfSgg~~-rl~~~~~la~~~~LlLL 437 (835)
+|+.... .+++ +.+++..+|+.. ..++.+++||+||+ |++++++++.+|+++||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 159 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLM 159 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 5655311 1122 223456677764 67889999999999 89999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 438 DEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||||+|+|+.....+.. ++..+.+ .+.++|++||+.+ +..+|++++.+.+|++...
T Consensus 160 DEPt~~LD~~~~~~l~~-~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (242)
T cd03295 160 DEPFGALDPITRDQLQE-EFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQV 217 (242)
T ss_pred cCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999998 4445544 4889999999987 6789999999999988643
No 122
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.4e-24 Score=229.78 Aligned_cols=167 Identities=16% Similarity=0.163 Sum_probs=133.5
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------h------------------
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M------------------ 377 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------m------------------ 377 (835)
|+.++|+++.|+++.+ ++||++.+| ++++|+||||+|||||||+| |+..+ .
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQG-ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 5789999999987665 999999999 99999999999999999999 55421 0
Q ss_pred cccceeecCCCCC--CchHH----------------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 378 SKAGLYLPAKNHP--RLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 378 a~~G~~vP~~~~~--~i~~~----------------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
.+.-.|+|+.... .+++. ..++..+|+...+++.+..|||||+ |++++++++.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEP 160 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 0112356655311 11222 2234556777778899999999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++||||||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 161 ~llilDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 161 QVLLFDEPTAALDPEITAQIVS-IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred CEEEEcCCCCcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999998 55566666899999999987 5578999999999988654
No 123
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.92 E-value=1e-24 Score=243.39 Aligned_cols=168 Identities=18% Similarity=0.218 Sum_probs=135.3
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhc-------------------ccce
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------------------KAGL 382 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma-------------------~~G~ 382 (835)
+.++++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+-. +.-.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 4 GGIRIDHLRVAYGANTVLDDLSLEIEAG-ELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred eEEEEEEEEEEECCeEEEeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEE
Confidence 45889999999987655 999999999 99999999999999999999 5544322 0012
Q ss_pred eecCCCC--CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEe
Q 003258 383 YLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (835)
Q Consensus 383 ~vP~~~~--~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLD 438 (835)
++|+... ..+++ ++.++..+|+.+..++.+.+|||||+ |++++++++.+|+++|||
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLD 162 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLD 162 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4444431 11111 23456777888889999999999999 899999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHHhcC--CcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 439 EIGSGTDPSEGVALATSILQYLRDR--VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 439 Ep~~glDp~~~~aL~~all~~l~~~--~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||++|||+..+..+...+. .+.+. |.|+|++|||.+ ...+|+++..+.+|.+...
T Consensus 163 EP~s~LD~~~r~~l~~~l~-~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~ 220 (362)
T TIGR03258 163 EPLSALDANIRANMREEIA-ALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAH 220 (362)
T ss_pred CccccCCHHHHHHHHHHHH-HHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999554 45544 789999999987 5679999999999988654
No 124
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=233.20 Aligned_cols=168 Identities=17% Similarity=0.180 Sum_probs=135.0
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc------------ccce
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS------------KAGL 382 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma------------~~G~ 382 (835)
.+|.++||+++|++..+ ++||++.+| ++++|+|||||||||||++| |+..+ .. ..-.
T Consensus 6 ~~l~i~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVAENLTVEIPDG-HFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred cEEEEEEEEEEECCEEEeeecceEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 58999999999987655 999999999 99999999999999999999 55432 10 1123
Q ss_pred eecCCCCCC--chH-------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcE
Q 003258 383 YLPAKNHPR--LPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (835)
Q Consensus 383 ~vP~~~~~~--i~~-------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~L 434 (835)
|+|+..... ..+ ++.++..+|+.+..++.+++|||||+ |++++++++.+|++
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 164 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAI 164 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCE
Confidence 556553110 111 22345566777778999999999999 89999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 435 VLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+||||||+|||+.....+...+. .+.+ .+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 165 lllDEPt~gLD~~~~~~l~~~L~-~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (265)
T PRK10253 165 MLLDEPTTWLDISHQIDLLELLS-ELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQ 225 (265)
T ss_pred EEEeCccccCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999554 4554 5889999999987 7789999999999987654
No 125
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.92 E-value=1.1e-24 Score=244.08 Aligned_cols=169 Identities=17% Similarity=0.191 Sum_probs=136.8
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----------------cccceee
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYL 384 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-----------------a~~G~~v 384 (835)
.+|+++|+++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+- .+...++
T Consensus 13 ~~L~l~~l~~~~~~~~~l~~vsl~i~~G-e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 91 (375)
T PRK09452 13 PLVELRGISKSFDGKEVISNLDLTINNG-EFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTV 91 (375)
T ss_pred ceEEEEEEEEEECCeEEEeeeEEEEeCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 57999999999987665 899999999 99999999999999999999 554331 0112345
Q ss_pred cCCCC--CCchHH---------------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCC
Q 003258 385 PAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (835)
Q Consensus 385 P~~~~--~~i~~~---------------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp 440 (835)
|+... ..++++ ++++..+|+.+..++.+++|||||+ |++++++++.+|+++|||||
T Consensus 92 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP 171 (375)
T PRK09452 92 FQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDES 171 (375)
T ss_pred ecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 55531 112222 3346667888889999999999999 89999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 441 ~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++||+..+..+...+.+...+.+.|+|++|||.+ ...++|++..+.+|++...
T Consensus 172 ~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~ 226 (375)
T PRK09452 172 LSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD 226 (375)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999555544456899999999977 5679999999999998643
No 126
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=1.3e-24 Score=224.37 Aligned_cols=151 Identities=22% Similarity=0.245 Sum_probs=118.4
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhc------------------ccceee
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------KAGLYL 384 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma------------------~~G~~v 384 (835)
|++++|+++.|++..+ ++||++.+| ++++|+||||+|||||+++| |+..+.. +.-.++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~ 79 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAG-ELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYL 79 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEe
Confidence 5789999999987655 999999999 99999999999999999999 5543210 011233
Q ss_pred cCCCC--CCchH------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCC
Q 003258 385 PAKNH--PRLPW------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (835)
Q Consensus 385 P~~~~--~~i~~------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~g 443 (835)
|+... ..+++ ++.++..+|+.+..++++++||+||+ |++++++++.+|+++||||||+|
T Consensus 80 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 159 (204)
T PRK13538 80 GHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTA 159 (204)
T ss_pred CCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 33321 01111 23456667887778899999999999 89999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh
Q 003258 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC 478 (835)
Q Consensus 444 lDp~~~~aL~~all~~l~~~~~~viitTH~~el~~ 478 (835)
+|+.....+.. ++..+.+.+.|+|++||+.+...
T Consensus 160 LD~~~~~~l~~-~l~~~~~~~~tiii~sh~~~~i~ 193 (204)
T PRK13538 160 IDKQGVARLEA-LLAQHAEQGGMVILTTHQDLPVA 193 (204)
T ss_pred CCHHHHHHHHH-HHHHHHHCCCEEEEEecChhhhc
Confidence 99999999998 55555566889999999987443
No 127
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.8e-24 Score=217.04 Aligned_cols=165 Identities=19% Similarity=0.244 Sum_probs=131.5
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhh---------------------------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLAS--------------------------- 375 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~--------------------------- 375 (835)
..++++||++.||++.+ ++|+.++++ .+++|+||+|||||||||++..+.
T Consensus 6 ~~~~~~~l~~yYg~~~aL~~i~l~i~~~-~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 6 PAIEVRDLNLYYGDKHALKDINLDIPKN-KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred ceeEecceeEEECchhhhccCceeccCC-ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 35789999999998776 999999999 999999999999999999993221
Q ss_pred -hhcccceeecCCC-CCCchHHHHHHHH---------------------cC----CcccccCCcccchHHHH-HHHHHHH
Q 003258 376 -LMSKAGLYLPAKN-HPRLPWFDLILAD---------------------IG----DHQSLEQNLSTFSGHIS-RIVDILE 427 (835)
Q Consensus 376 -~ma~~G~~vP~~~-~~~i~~~d~i~~~---------------------ig----~~~~~~~~lstfSgg~~-rl~~~~~ 427 (835)
+..+.| .|++.+ +..++++|+|..- .. ..|.++++...|||||+ |+++|++
T Consensus 85 ~lRr~vG-MVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARa 163 (253)
T COG1117 85 ELRRRVG-MVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARA 163 (253)
T ss_pred HHHHHhe-eeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHH
Confidence 122344 344443 2335566665211 11 12567788889999999 8999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
+|.+|++||||||||+|||.+...|.+ ++..|++ .-|||+|||.+. -.+++|...+|.+|.+.-
T Consensus 164 lAv~PeVlLmDEPtSALDPIsT~kIEe-Li~eLk~-~yTIviVTHnmqQAaRvSD~taFf~~G~LvE 228 (253)
T COG1117 164 LAVKPEVLLMDEPTSALDPISTLKIEE-LITELKK-KYTIVIVTHNMQQAARVSDYTAFFYLGELVE 228 (253)
T ss_pred HhcCCcEEEecCcccccCchhHHHHHH-HHHHHHh-ccEEEEEeCCHHHHHHHhHhhhhhcccEEEE
Confidence 999999999999999999999999999 6666774 689999999987 677999999999887653
No 128
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.4e-24 Score=225.55 Aligned_cols=164 Identities=21% Similarity=0.258 Sum_probs=128.6
Q ss_pred EEEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----------------------cccce
Q 003258 327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGL 382 (835)
Q Consensus 327 l~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-----------------------a~~G~ 382 (835)
+++ ||+|+|+++.+++||++.+ ++++|+||||+||||||++| |++.+- .+...
T Consensus 2 ~~~-~l~~~~~~~~~~vsl~i~~--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 2 LCV-DIEKRLPDFTLKIDFDLNE--EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred cee-eeeEecCCeeeCceEEEcc--eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 344 8999999987799999987 79999999999999999999 554321 01123
Q ss_pred eecCCCCC--CchH-------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCC
Q 003258 383 YLPAKNHP--RLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (835)
Q Consensus 383 ~vP~~~~~--~i~~-------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp 440 (835)
|+|+.... .+++ +.+++..+|+....++.+++|||||+ |+.++++++.+|+++|||||
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 158 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEP 158 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 55555311 1111 22345667777778899999999999 89999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 441 ~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
|+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++.+.+.+|.+..
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 159 FSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999554443344889999999987 567999999999987753
No 129
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.92 E-value=1.3e-24 Score=227.61 Aligned_cols=165 Identities=17% Similarity=0.191 Sum_probs=129.7
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhh-----hhh-----------c---------
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA-----SLM-----------S--------- 378 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli-----~~m-----------a--------- 378 (835)
|+++||++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+. .+- .
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKG-EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 357899999987665 999999999 99999999999999999999 776 321 0
Q ss_pred -ccceeecCCCCC-CchH----------------------HHHHHHHcCCcccccCC--cccchHHHH-HHHHHHHHcCC
Q 003258 379 -KAGLYLPAKNHP-RLPW----------------------FDLILADIGDHQSLEQN--LSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 379 -~~G~~vP~~~~~-~i~~----------------------~d~i~~~ig~~~~~~~~--lstfSgg~~-rl~~~~~la~~ 431 (835)
+.-.|+|+.... .+++ +..++..+|+.+..++. +.+|||||+ |++++++++.+
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE 159 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence 112356665311 1111 12345566776666666 499999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|+++||||||+|||+.....+.. ++..+.+. .|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 160 p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 160 PEVLLLDEPTSALDPISTAKIEE-LIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred CCEEEEeCCCccCCHHHHHHHHH-HHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999999998 45555555 89999999987 5679999999999987643
No 130
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.92 E-value=1.7e-24 Score=226.84 Aligned_cols=163 Identities=23% Similarity=0.220 Sum_probs=128.2
Q ss_pred CCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cccc
Q 003258 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G 381 (835)
+.|++++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+- .+..
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAG-EFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 357999999999987665 999999999 99999999999999999999 554321 1112
Q ss_pred eeecCCCCC-CchH-------------------HHHHHHHcCCc-ccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeC
Q 003258 382 LYLPAKNHP-RLPW-------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (835)
Q Consensus 382 ~~vP~~~~~-~i~~-------------------~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDE 439 (835)
.|+|+.... ..++ +..++..+|+. ...++++.+||+||+ |++++++++.+|+++||||
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDE 163 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 355554310 0011 23456667775 467899999999999 8999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccccc
Q 003258 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (835)
Q Consensus 440 p~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~ 487 (835)
||+|||+.....+...+.+...+.+.++|++||+.+....|++.+.+.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~ 211 (225)
T PRK10247 164 ITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQ 211 (225)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEe
Confidence 999999999999999555544456889999999988556788888774
No 131
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.92 E-value=1.9e-24 Score=230.86 Aligned_cols=168 Identities=18% Similarity=0.191 Sum_probs=133.3
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------------------------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------ 377 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------------------------ 377 (835)
++++++||++.|+++.+ ++||++.+| ++++|+||||+||||||++| |++.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAG-DVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 57899999999987655 999999999 99999999999999999999 554321
Q ss_pred --------cccceeecCCCCC--CchHHH----------------------HHHHHcCCcccc-cCCcccchHHHH-HHH
Q 003258 378 --------SKAGLYLPAKNHP--RLPWFD----------------------LILADIGDHQSL-EQNLSTFSGHIS-RIV 423 (835)
Q Consensus 378 --------a~~G~~vP~~~~~--~i~~~d----------------------~i~~~ig~~~~~-~~~lstfSgg~~-rl~ 423 (835)
.+.-.|+|+.... .+.+++ .++..+|+.... ++.+++|||||+ |++
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~ 162 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVS 162 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 0112355555311 112222 235556666554 788999999999 899
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 424 ~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++++++.+|+++||||||+|||+.....+.. ++..+.+.|+++|++||+.+ +..+|++++.+.+|++...
T Consensus 163 laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 163 IARALAMEPEVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999 55566666899999999987 5568999999999987643
No 132
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.92 E-value=1.5e-24 Score=225.26 Aligned_cols=166 Identities=18% Similarity=0.225 Sum_probs=131.2
Q ss_pred EEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----------------cccceeecCCCC
Q 003258 328 TVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAKNH 389 (835)
Q Consensus 328 ~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-----------------a~~G~~vP~~~~ 389 (835)
+++||++.|++...++||++.+| ++++|+||||+|||||+|+| |++.+. .+...|+|+...
T Consensus 2 ~~~~l~~~~~~~~~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~ 80 (213)
T TIGR01277 2 ALDKVRYEYEHLPMEFDLNVADG-EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80 (213)
T ss_pred eEEeeeEEeCCcceeeEEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCc
Confidence 57899999986445999999999 99999999999999999999 554321 112335666531
Q ss_pred C--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCC
Q 003258 390 P--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (835)
Q Consensus 390 ~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glD 445 (835)
. .+++ +.+++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||+|+|
T Consensus 81 ~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 160 (213)
T TIGR01277 81 LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALD 160 (213)
T ss_pred cCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 1 1111 22345667777778899999999999 8999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 446 PSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 446 p~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+.....+...+.+...+.+.|+|++||+.+ +..+|++.+.+.+|.+...
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~ 210 (213)
T TIGR01277 161 PLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVV 210 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEe
Confidence 999999999555443445889999999987 5678999999999887543
No 133
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.6e-24 Score=234.64 Aligned_cols=169 Identities=18% Similarity=0.170 Sum_probs=134.7
Q ss_pred CCeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhc--------------------
Q 003258 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------------------- 378 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma-------------------- 378 (835)
++|++++|+++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |+..+-.
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~G-e~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRG-SWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence 368999999999964 233 999999999 99999999999999999999 6653211
Q ss_pred --ccceeecCCCC---CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCC
Q 003258 379 --KAGLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 379 --~~G~~vP~~~~---~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~ 431 (835)
+...|+|+... ....+ ++.++..+|+.+..++.+++||+||+ |++++++++.+
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~ 161 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVE 161 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 11235555421 11111 23346667888888999999999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
|+++||||||+|||+.....+...+ ..+.+ .|.|||++||+.+...+|++++.+.+|.+..+
T Consensus 162 P~llllDEPt~gLD~~~~~~l~~~l-~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~ 224 (282)
T PRK13640 162 PKIIILDESTSMLDPAGKEQILKLI-RKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQ 224 (282)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999955 45554 48899999999886678999999999988754
No 134
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.92 E-value=1.6e-24 Score=241.33 Aligned_cols=168 Identities=16% Similarity=0.205 Sum_probs=135.2
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c----------ccceeec
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S----------KAGLYLP 385 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a----------~~G~~vP 385 (835)
+|+++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- . +.-.|+|
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSG-QMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 5789999999987655 999999999 99999999999999999999 554321 0 1123556
Q ss_pred CCCC--CCchH-------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEE
Q 003258 386 AKNH--PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (835)
Q Consensus 386 ~~~~--~~i~~-------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLL 437 (835)
++.. ..+++ +.+++..+|+.+..++++.+|||||+ |++++++++.+|+++||
T Consensus 81 Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLL 160 (353)
T PRK10851 81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL 160 (353)
T ss_pred cCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5531 01111 22356677888888999999999999 89999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||||+|||+..+..+...+.+...+.+.|+|++|||.+ ...+|+++..+.+|.+...
T Consensus 161 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~ 218 (353)
T PRK10851 161 DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQA 218 (353)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999555543445889999999987 6789999999999988654
No 135
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.7e-24 Score=233.85 Aligned_cols=167 Identities=16% Similarity=0.143 Sum_probs=132.7
Q ss_pred eEEEeeeeeecC-Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c------------ccce
Q 003258 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S------------KAGL 382 (835)
Q Consensus 326 ~l~~~~ls~~y~-~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a------------~~G~ 382 (835)
|++++||+++|+ +..+ ++||++.+| ++++|+||||||||||||+| |+..+- . +.-.
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRN-SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 688999999995 4434 999999999 99999999999999999999 554321 0 1123
Q ss_pred eecCCCC---CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEE
Q 003258 383 YLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (835)
Q Consensus 383 ~vP~~~~---~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLL 437 (835)
++|+... ...++ ++.++..+|+.+.+++.+..||+||+ |+.++++++.+|+++||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llil 161 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVL 161 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 5555431 11111 23345666787788999999999999 89999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 438 DEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||||+|||+.....+.. ++..+.+ .+.|+|++||+.+ +..+|++++.+.+|.+..+
T Consensus 162 DEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~ 219 (277)
T PRK13652 162 DEPTAGLDPQGVKELID-FLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAY 219 (277)
T ss_pred eCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEE
Confidence 99999999999999999 4444554 4899999999987 5579999999999988754
No 136
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.5e-24 Score=241.94 Aligned_cols=167 Identities=19% Similarity=0.259 Sum_probs=134.4
Q ss_pred eEEEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c----------------ccc
Q 003258 326 EMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S----------------KAG 381 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a----------------~~G 381 (835)
||++ ||+++|++..+++||++.+| ++++|+||||||||||||+| |++.+- . +.-
T Consensus 1 ~l~~-~l~k~~~~~~~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i 78 (352)
T PRK11144 1 MLEL-NFKQQLGDLCLTVNLTLPAQ-GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRI 78 (352)
T ss_pred CeEE-EEEEEeCCEEEEEEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCE
Confidence 5777 99999998767999999999 99999999999999999999 554321 0 111
Q ss_pred eeecCCCC--CCchH---------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCC
Q 003258 382 LYLPAKNH--PRLPW---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (835)
Q Consensus 382 ~~vP~~~~--~~i~~---------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~g 443 (835)
.|+|+... ..+++ +++++..+|+.+..++.+.+|||||+ |++++++++.+|+++||||||+|
T Consensus 79 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~ 158 (352)
T PRK11144 79 GYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred EEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 24555531 11122 33456778888888999999999999 89999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 444 lDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||+..+..+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 159 LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~ 210 (352)
T PRK11144 159 LDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAF 210 (352)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999555443444889999999987 6789999999999987643
No 137
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.8e-24 Score=235.25 Aligned_cols=166 Identities=16% Similarity=0.152 Sum_probs=132.1
Q ss_pred EEEeeeeeecCC-----cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c-------------
Q 003258 327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S------------- 378 (835)
Q Consensus 327 l~~~~ls~~y~~-----~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a------------- 378 (835)
++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+- .
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSG-SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 789999999974 234 999999999 99999999999999999999 554321 0
Q ss_pred ---ccceeecCCCC---CCchH---------------------HHHHHHHcCCc-ccccCCcccchHHHH-HHHHHHHHc
Q 003258 379 ---KAGLYLPAKNH---PRLPW---------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (835)
Q Consensus 379 ---~~G~~vP~~~~---~~i~~---------------------~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~~~la 429 (835)
+...|+|+... ...++ ++.++..+|+. ...++++.+|||||+ |++++++++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 11236666531 01111 23345677876 456889999999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
.+|++|||||||+|||+.....+.. ++..+.+ .|.|||++||+.+ +..+|++++.+.+|.+..+
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~-~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~ 227 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMME-MFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ 227 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999 4555554 5899999999987 5679999999999998765
No 138
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.91 E-value=6.4e-24 Score=245.60 Aligned_cols=166 Identities=21% Similarity=0.244 Sum_probs=127.1
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc--ccceeecCCCCCC-
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS--KAGLYLPAKNHPR- 391 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma--~~G~~vP~~~~~~- 391 (835)
.||.++|+++.|+++.+ ++++++.+| +.++|+|+||+|||||||+| |...+ .. +. .++||.....
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G-~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v-~~l~Q~~~~~~ 79 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPG-ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRV-GYLSQEPPLDP 79 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCC-CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceE-EEeCCCCCcCC
Confidence 37899999999999887 999999999 99999999999999999999 33221 10 11 1333332111
Q ss_pred -chHHH---------------------------------------------------HHHHHcCCcccccCCcccchHHH
Q 003258 392 -LPWFD---------------------------------------------------LILADIGDHQSLEQNLSTFSGHI 419 (835)
Q Consensus 392 -i~~~d---------------------------------------------------~i~~~ig~~~~~~~~lstfSgg~ 419 (835)
.++++ .++..+|+.+. ++++++||||+
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~ 158 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGW 158 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHH
Confidence 01111 22334555555 89999999999
Q ss_pred H-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeecccc
Q 003258 420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLET 497 (835)
Q Consensus 420 ~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~~~~ 497 (835)
+ |+++|.++..+|++|||||||||||.....-| -+||.+..+|+|+||||.+ |..+|++++.+.+|.+..+.++
T Consensus 159 r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WL----e~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gn 234 (530)
T COG0488 159 RRRVALARALLEEPDLLLLDEPTNHLDLESIEWL----EDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGN 234 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHH----HHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCC
Confidence 9 99999999999999999999999999765544 4566555669999999998 7889999999999877665444
No 139
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2e-24 Score=233.06 Aligned_cols=167 Identities=19% Similarity=0.182 Sum_probs=133.0
Q ss_pred eEEEeeeeeecCC-cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------------------ccc
Q 003258 326 EMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKA 380 (835)
Q Consensus 326 ~l~~~~ls~~y~~-~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m---------------------a~~ 380 (835)
|+.++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKG-EMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 5789999999963 434 999999999 99999999999999999999 554321 111
Q ss_pred ceeecCCCC---CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 381 GLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 381 G~~vP~~~~---~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
..|+|+... ....+ +..++..+|+.+..++.+.+|||||+ |+.++++++.+|+++
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 159 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEII 159 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 236666531 11111 22345667777778899999999999 799999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||||||+|+|+.....+...+ ..+.+.+.|+|++||+.+ +..+|++++.+.+|.+..+
T Consensus 160 llDEPt~gLD~~~~~~l~~~l-~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~ 218 (275)
T PRK13639 160 VLDEPTSGLDPMGASQIMKLL-YDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKE 218 (275)
T ss_pred EEeCCCcCCCHHHHHHHHHHH-HHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999944 555556899999999988 5568999999999988654
No 140
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.91 E-value=1.7e-24 Score=232.74 Aligned_cols=169 Identities=17% Similarity=0.147 Sum_probs=131.1
Q ss_pred CeEEEeeeeeecCC---------cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------------
Q 003258 325 SEMTVGSLSKGISD---------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------- 377 (835)
Q Consensus 325 ~~l~~~~ls~~y~~---------~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------- 377 (835)
.||+++||+++|++ .++ ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREG-QTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCC-CEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 48999999999962 234 999999999 99999999999999999999 555321
Q ss_pred ----cccceeecCCCC----CCch----------------------HHHHHHHHcCCc-ccccCCcccchHHHH-HHHHH
Q 003258 378 ----SKAGLYLPAKNH----PRLP----------------------WFDLILADIGDH-QSLEQNLSTFSGHIS-RIVDI 425 (835)
Q Consensus 378 ----a~~G~~vP~~~~----~~i~----------------------~~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~ 425 (835)
.+...|+|+... ..+. .+.+++..+|+. +..++.+++||+||+ |++++
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 111235565431 0000 022346667773 556778899999999 89999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 426 ~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~ 231 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVER 231 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence 99999999999999999999999999999555533345889999999987 5568999999999987643
No 141
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.91 E-value=1.4e-24 Score=223.77 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=120.5
Q ss_pred EeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----------------------cccce
Q 003258 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGL 382 (835)
Q Consensus 329 ~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-----------------------a~~G~ 382 (835)
++||++.|+++.+ ++||++.+| ++++|+||||+|||||||++ |++.+- .+...
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKG-KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 3689999987655 999999999 99999999999999999999 554320 01123
Q ss_pred eecCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEe
Q 003258 383 YLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (835)
Q Consensus 383 ~vP~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLD 438 (835)
++|+.... ..++ +..++..+|+.+..++.+.+||+||+ |++++++++.+|+++|||
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllD 159 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILAD 159 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 44444211 1111 22356677887788999999999999 899999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccc
Q 003258 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 484 (835)
Q Consensus 439 Ep~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~ 484 (835)
|||+|||+.....+... +..+.+.+.++|++||+.++..+|++++
T Consensus 160 EPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~sh~~~~~~~~d~i~ 204 (206)
T TIGR03608 160 EPTGSLDPKNRDEVLDL-LLELNDEGKTIIIVTHDPEVAKQADRVI 204 (206)
T ss_pred CCcCCCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHhhcCEEE
Confidence 99999999999999994 4555556889999999988666777654
No 142
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.91 E-value=2e-24 Score=230.57 Aligned_cols=166 Identities=17% Similarity=0.184 Sum_probs=133.1
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cccceee
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYL 384 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G~~v 384 (835)
|.++|+++.|++..+ ++||++.+| ++++|+||||+|||||||+| |++.+- .+.-.|+
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPG-SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 468999999987666 999999999 99999999999999999999 554320 1112356
Q ss_pred cCCCCC--CchH-------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEE
Q 003258 385 PAKNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (835)
Q Consensus 385 P~~~~~--~i~~-------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlL 436 (835)
|+.... .+++ +.+++..+|+.+..++.++.||+||+ |++++++++.+|+++|
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLL 160 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 655311 1111 12345566777778899999999999 8999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|||||+|+|+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|.+..+
T Consensus 161 lDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (256)
T TIGR03873 161 LDEPTNHLDVRAQLETLA-LVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAA 218 (256)
T ss_pred EcCccccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEe
Confidence 999999999999999999 55566666889999999988 5579999999999988654
No 143
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.91 E-value=4e-24 Score=229.09 Aligned_cols=169 Identities=20% Similarity=0.254 Sum_probs=135.0
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhc-----------------------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS----------------------- 378 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma----------------------- 378 (835)
.||+++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+-.
T Consensus 3 ~~l~~~nl~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHHG-EMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred cEEEEeeEEEEeCCeEEEecceEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 47899999999987665 999999999 99999999999999999999 6654310
Q ss_pred ----ccceeecCCCCC--CchH-----------------------------HHHHHHHcCCcccccCCcccchHHHH-HH
Q 003258 379 ----KAGLYLPAKNHP--RLPW-----------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RI 422 (835)
Q Consensus 379 ----~~G~~vP~~~~~--~i~~-----------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl 422 (835)
+...|+|+.... .+++ +..++..+|+.+..++.+.+||+||+ |+
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 161 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRV 161 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHH
Confidence 012355655310 1111 12345557777778999999999999 89
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 423 ~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++++++.+|++|||||||+|||+.....+...+.+...+.|.|+|++||+.+ +..+|++++.+.+|.+..+
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 162 AIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYD 234 (262)
T ss_pred HHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999554433345889999999988 5789999999999987644
No 144
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.91 E-value=2.3e-24 Score=228.88 Aligned_cols=166 Identities=19% Similarity=0.259 Sum_probs=130.6
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------c------------------
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S------------------ 378 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------a------------------ 378 (835)
|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- +
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKN-QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCC-CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 5789999999987655 999999999 99999999999999999999 665321 0
Q ss_pred --ccceeecCCCCC-CchHHH----------------------HHHHHcCCc----ccccCCcccchHHHH-HHHHHHHH
Q 003258 379 --KAGLYLPAKNHP-RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (835)
Q Consensus 379 --~~G~~vP~~~~~-~i~~~d----------------------~i~~~ig~~----~~~~~~lstfSgg~~-rl~~~~~l 428 (835)
+.-.|+|+.... ....++ .++..+|+. +..++.+.+|||||+ |+++++++
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 112245544210 011222 234455665 567888999999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 429 a~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (247)
T TIGR00972 160 AVEPEVLLLDEPTSALDPIATGKIEE-LIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEY 224 (247)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999998 5555555 489999999987 6789999999999987643
No 145
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.1e-24 Score=242.20 Aligned_cols=170 Identities=14% Similarity=0.158 Sum_probs=138.5
Q ss_pred CCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c----------cccee
Q 003258 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S----------KAGLY 383 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a----------~~G~~ 383 (835)
..||+++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- . +...+
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKG-EIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 457999999999987655 899999999 99999999999999999999 554321 0 11235
Q ss_pred ecCCCC--CCchHH---------------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeC
Q 003258 384 LPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (835)
Q Consensus 384 vP~~~~--~~i~~~---------------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDE 439 (835)
+|++.. ..+++. ..++..+|+.+..++.+.+|||||+ |++++++++.+|+++||||
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDE 175 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE 175 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 665541 112222 2446667888888999999999999 8999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 440 p~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|+++||+..+..+...+.+.+.+.+.|+|++|||.+ ...+||+++.+.+|++...
T Consensus 176 P~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~ 231 (377)
T PRK11607 176 PMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQI 231 (377)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEE
Confidence 999999999999998676666667899999999987 5689999999999988654
No 146
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.6e-24 Score=235.69 Aligned_cols=170 Identities=16% Similarity=0.163 Sum_probs=134.5
Q ss_pred CCCeEEEeeeeeecCCc------ee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------h----------
Q 003258 323 ENSEMTVGSLSKGISDF------PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M---------- 377 (835)
Q Consensus 323 g~~~l~~~~ls~~y~~~------~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------m---------- 377 (835)
+..+|+++||++.|++. .+ ++||++.+| ++++|+||||||||||+|+| |+..+ .
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKN-KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 34689999999999742 33 999999999 99999999999999999999 55322 1
Q ss_pred ------------------cccceeecCCCC---CCchH---------------------HHHHHHHcCCc-ccccCCccc
Q 003258 378 ------------------SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDH-QSLEQNLST 414 (835)
Q Consensus 378 ------------------a~~G~~vP~~~~---~~i~~---------------------~d~i~~~ig~~-~~~~~~lst 414 (835)
.+.-.++|+... ...++ +..++..+|+. ...++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 176 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFG 176 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCccc
Confidence 011135555431 00111 22345667775 567889999
Q ss_pred chHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCcee
Q 003258 415 FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (835)
Q Consensus 415 fSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~ 492 (835)
|||||+ |++++++++.+|++|||||||+|||+.....+.. ++..+.+++.|+|++||+.+ +..+|++++.+.+|.+.
T Consensus 177 LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~-~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~ 255 (320)
T PRK13631 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ-LILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255 (320)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 999999 8999999999999999999999999999999998 55556666899999999988 66899999999999987
Q ss_pred ec
Q 003258 493 FS 494 (835)
Q Consensus 493 ~~ 494 (835)
.+
T Consensus 256 ~~ 257 (320)
T PRK13631 256 KT 257 (320)
T ss_pred Ee
Confidence 65
No 147
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.5e-24 Score=233.26 Aligned_cols=168 Identities=17% Similarity=0.142 Sum_probs=134.7
Q ss_pred CeEEEeeeeeecC-Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------------------cc
Q 003258 325 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SK 379 (835)
Q Consensus 325 ~~l~~~~ls~~y~-~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m---------------------a~ 379 (835)
.|++++|+++.|+ ++.+ ++||++.+| ++++|+||||+|||||||+| |++.+. ..
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKG-EVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4889999999996 4544 999999999 99999999999999999999 554321 01
Q ss_pred cceeecCCCC---CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcE
Q 003258 380 AGLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (835)
Q Consensus 380 ~G~~vP~~~~---~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~L 434 (835)
...|+|+... ....+ ++.++..+|+....++.+..||+||+ |+.++++++.+|++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~l 162 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 162 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 1246666531 11111 23346677887788999999999999 89999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 435 VLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+||||||+|||+.....+...+ ..+.+ .|.|+|++||+.+ +..+|+++..+.+|.+..+
T Consensus 163 LilDEPt~gLD~~~~~~l~~~l-~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~ 223 (283)
T PRK13636 163 LVLDEPTAGLDPMGVSEIMKLL-VEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQ 223 (283)
T ss_pred EEEeCCccCCCHHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999944 45554 4889999999988 4569999999999988654
No 148
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.91 E-value=2.4e-24 Score=224.54 Aligned_cols=163 Identities=18% Similarity=0.199 Sum_probs=124.6
Q ss_pred EEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cccce
Q 003258 327 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (835)
Q Consensus 327 l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G~ 382 (835)
++++|+++.|++ ..+ ++||++.+| ++++|+||||+||||||++| |+..+- .....
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G-~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAG-EKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 678999999975 334 999999999 99999999999999999999 554321 01123
Q ss_pred eecCCCCC-CchHHH---------------HHHHHcCCcccccC-----------CcccchHHHH-HHHHHHHHcCCCcE
Q 003258 383 YLPAKNHP-RLPWFD---------------LILADIGDHQSLEQ-----------NLSTFSGHIS-RIVDILELVSRESL 434 (835)
Q Consensus 383 ~vP~~~~~-~i~~~d---------------~i~~~ig~~~~~~~-----------~lstfSgg~~-rl~~~~~la~~~~L 434 (835)
++|+.... ...+.+ .++..+++.+.+++ .+.+|||||+ |+.++++++.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 55655311 012222 23444555544444 3469999999 89999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCcee
Q 003258 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATE 492 (835)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~ 492 (835)
+||||||+|||+.....+...+ ..+.+. .|+|++||+.++..+|++++.+.+|.+.
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l-~~~~~~-~tii~~sH~~~~~~~~d~v~~l~~g~i~ 217 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERL-RQLLGD-KTLIIITHRPSLLDLVDRIIVMDSGRIV 217 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHH-HHhcCC-CEEEEEeCCHHHHHhCCEEEEEeCCeEe
Confidence 9999999999999999999954 445554 8999999999866899999999998764
No 149
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.7e-24 Score=232.67 Aligned_cols=168 Identities=17% Similarity=0.147 Sum_probs=134.0
Q ss_pred CeEEEeeeeeecCC------cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------------------
Q 003258 325 SEMTVGSLSKGISD------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------ 377 (835)
Q Consensus 325 ~~l~~~~ls~~y~~------~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------------------ 377 (835)
.|++++|+++.|++ +.+ ++||++.+| ++++|+|||||||||||++| |++.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKG-EFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHH
Confidence 47899999999963 234 999999999 99999999999999999999 554321
Q ss_pred --cccceeecCCCC---CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcC
Q 003258 378 --SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (835)
Q Consensus 378 --a~~G~~vP~~~~---~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~ 430 (835)
.+...|+|+... ....+ ++.++..+|+.+..++.+.+||+||+ |++++++++.
T Consensus 82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~ 161 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM 161 (280)
T ss_pred HHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 112235666531 00011 23446677888888999999999999 7999999999
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+|+++||||||+|||+.....+.. ++..+.+ .|.|+|++||+.+....|++++.+.+|.+..+
T Consensus 162 ~p~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~ 225 (280)
T PRK13633 162 RPECIIFDEPTAMLDPSGRREVVN-TIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVME 225 (280)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEe
Confidence 999999999999999999999998 5555554 58999999999886556999999999987654
No 150
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.91 E-value=2.7e-24 Score=227.35 Aligned_cols=166 Identities=22% Similarity=0.269 Sum_probs=127.6
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhh--hh-------------------hccc-c
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SL-------------------MSKA-G 381 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli--~~-------------------ma~~-G 381 (835)
|+++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+. .+ ..+. -
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKG-EIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 357899999987665 999999999 99999999999999999999 663 11 0112 1
Q ss_pred eeecCCCCC--CchH----------------------------HHHHHHHcCCcc-cccCCcc-cchHHHH-HHHHHHHH
Q 003258 382 LYLPAKNHP--RLPW----------------------------FDLILADIGDHQ-SLEQNLS-TFSGHIS-RIVDILEL 428 (835)
Q Consensus 382 ~~vP~~~~~--~i~~----------------------------~d~i~~~ig~~~-~~~~~ls-tfSgg~~-rl~~~~~l 428 (835)
.|+|+.... .++. +..++..+|+.+ ..++.+. .|||||+ |+++++++
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al 159 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA 159 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence 355655311 0000 123345566653 4567776 5999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhH-Hhh-hcccccccCCceeec
Q 003258 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCL-KDKDTRFENAATEFS 494 (835)
Q Consensus 429 a~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el-~~~-~~~~~~~~n~~v~~~ 494 (835)
+.+|+++||||||+|||+.....+.. ++..+.+.+.|+|++||+.+. ..+ |++++.+.+|++...
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 160 LLEPKLAILDEIDSGLDIDALKIVAE-GINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEe
Confidence 99999999999999999999999998 445556668899999999884 456 799999999987654
No 151
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.5e-24 Score=233.28 Aligned_cols=165 Identities=17% Similarity=0.114 Sum_probs=131.4
Q ss_pred EEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----------------------cccc
Q 003258 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAG 381 (835)
Q Consensus 328 ~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-----------------------a~~G 381 (835)
.++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+..
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREG-EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 35689999988766 999999999 99999999999999999999 554321 0112
Q ss_pred eeecCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEE
Q 003258 382 LYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (835)
Q Consensus 382 ~~vP~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLL 437 (835)
.|+|+.... .+++ +.+++..+|+.+.+++.+++||+||+ |++++++++.+|++|||
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 356655311 1111 22345667887788999999999999 89999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
||||+|||+.....+...+.+...+.|.|+|++||+.+ +..+|++++.+.+|.+..
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 241 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQ 241 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999554443445889999999987 578999999999998764
No 152
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.91 E-value=3.6e-24 Score=229.91 Aligned_cols=168 Identities=16% Similarity=0.172 Sum_probs=131.6
Q ss_pred eEEEeeeeeecCC---------cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh----------------
Q 003258 326 EMTVGSLSKGISD---------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------- 377 (835)
Q Consensus 326 ~l~~~~ls~~y~~---------~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m---------------- 377 (835)
|++++||++.|++ +.+ ++||++.+| ++++|+|||||||||||++| |+..+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 80 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEG-ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDR 80 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCH
Confidence 6889999999952 334 999999999 99999999999999999999 554320
Q ss_pred ------cccceeecCCCC----CCchH----------------------HHHHHHHcCCc-ccccCCcccchHHHH-HHH
Q 003258 378 ------SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIV 423 (835)
Q Consensus 378 ------a~~G~~vP~~~~----~~i~~----------------------~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~ 423 (835)
.+.-.|+|+... ..+.+ +..++..+|+. ...++.+..|||||+ |++
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~ 160 (265)
T TIGR02769 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN 160 (265)
T ss_pred HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH
Confidence 112345666531 11111 12345667775 567889999999999 899
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 424 ~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++++++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++.+.+.+|.+...
T Consensus 161 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 161 IARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999555544445889999999988 5568999999999987643
No 153
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.4e-24 Score=230.55 Aligned_cols=168 Identities=15% Similarity=0.085 Sum_probs=132.7
Q ss_pred CeEEEeeeeeecCCc--ee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------ccc
Q 003258 325 SEMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~--~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~ 380 (835)
.|++++|+++.|++. .+ ++||++.+| ++++|+|||||||||||++| |++.+. .+.
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~G-e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKG-QWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 478999999999752 23 999999999 99999999999999999999 554321 011
Q ss_pred ceeecCCCC---CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 381 GLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 381 G~~vP~~~~---~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
-.|+|+... ....+ +..++..+|+.+..++.+..||+||+ |++++++++.+|+++
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 164 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVI 164 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 235555431 00001 22445667877788899999999999 899999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
||||||+|||+.....+...+. .+.+ .+.|+|++||+.+....|++++.+.+|.+..+
T Consensus 165 lLDEPt~~LD~~~~~~l~~~L~-~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~ 223 (269)
T PRK13648 165 ILDEATSMLDPDARQNLLDLVR-KVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKE 223 (269)
T ss_pred EEeCCcccCCHHHHHHHHHHHH-HHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEe
Confidence 9999999999999999999554 4544 48899999999875556999999999988654
No 154
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=3e-24 Score=222.17 Aligned_cols=159 Identities=19% Similarity=0.202 Sum_probs=121.8
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc---------ccceeecC
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS---------KAGLYLPA 386 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma---------~~G~~vP~ 386 (835)
|++++||++.|++..+ ++||++.+| ++++|+||||||||||+++| |+..+ .. ....|+|+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAG-EALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence 6889999999987655 999999999 99999999999999999999 55321 10 01124443
Q ss_pred CCCC--CchH-----------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCH
Q 003258 387 KNHP--RLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (835)
Q Consensus 387 ~~~~--~i~~-----------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp 446 (835)
.... ...+ +.+++..+|+.+..++++.+||+||+ |++++++++.+|+++||||||+|+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 160 (207)
T PRK13539 81 RNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160 (207)
T ss_pred CCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 3211 1111 23345666777677889999999999 89999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccccc
Q 003258 447 SEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (835)
Q Consensus 447 ~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~ 487 (835)
.....+.. ++..+.+++.|+|++||+.+.... +..+.+.
T Consensus 161 ~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~ 199 (207)
T PRK13539 161 AAVALFAE-LIRAHLAQGGIVIAATHIPLGLPG-ARELDLG 199 (207)
T ss_pred HHHHHHHH-HHHHHHHCCCEEEEEeCCchhhcc-CcEEeec
Confidence 99999998 445555568999999999875443 5554443
No 155
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.91 E-value=4e-24 Score=227.77 Aligned_cols=169 Identities=20% Similarity=0.191 Sum_probs=132.8
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc----------------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS---------------- 378 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma---------------- 378 (835)
.|++++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+ ..
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPG-EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 47899999999987555 999999999 99999999999999999999 55321 00
Q ss_pred -----ccceeecCCCC----CCchH----------------------HHHHHHHcCCc-ccccCCcccchHHHH-HHHHH
Q 003258 379 -----KAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDI 425 (835)
Q Consensus 379 -----~~G~~vP~~~~----~~i~~----------------------~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~ 425 (835)
+.-.++|+... ..+.. +..++..+|+. ...++.++.|||||+ |++++
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la 160 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA 160 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence 11245565531 01111 12345666775 467889999999999 89999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 426 ~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++++.+|+++||||||+|||+.....+...+.+...+.+.++|++||+.+ +..+|++++.+.+|.+...
T Consensus 161 ral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 161 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 99999999999999999999999999999555544455899999999988 4568999999999987643
No 156
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.1e-24 Score=231.14 Aligned_cols=168 Identities=20% Similarity=0.195 Sum_probs=132.5
Q ss_pred CeEEEeeeeeecC--Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------ccc
Q 003258 325 SEMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (835)
Q Consensus 325 ~~l~~~~ls~~y~--~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~ 380 (835)
.|+.++|+++.|+ ++.+ ++||++.+| ++++|+|||||||||||++| |+..+. .+.
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEG-EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 5899999999995 3344 999999999 99999999999999999999 554321 111
Q ss_pred ceeecCCCC---CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 381 GLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 381 G~~vP~~~~---~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
-.|+|+... ...++ +.+++..+|+...+++.+.+|||||+ |++++++++.+|+++
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 164 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEII 164 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 235665531 11122 22345667777778999999999999 899999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhcC-CcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~-~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
||||||+|||+.....+...+. .+.+. +.|+|++||+.+...+|++++.+.+|.+...
T Consensus 165 lLDEP~~gLD~~~~~~l~~~l~-~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~ 223 (271)
T PRK13632 165 IFDESTSMLDPKGKREIKKIMV-DLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQ 223 (271)
T ss_pred EEeCCcccCCHHHHHHHHHHHH-HHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999998554 45544 5899999999885568999999999987643
No 157
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.91 E-value=2.6e-24 Score=250.39 Aligned_cols=167 Identities=17% Similarity=0.146 Sum_probs=135.0
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c------------cccee
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S------------KAGLY 383 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a------------~~G~~ 383 (835)
||+++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- . +.-.+
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAG-DSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 6899999999987655 999999999 99999999999999999999 554320 0 00124
Q ss_pred ecCCCCC----------CchH-------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeC
Q 003258 384 LPAKNHP----------RLPW-------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (835)
Q Consensus 384 vP~~~~~----------~i~~-------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDE 439 (835)
+|+.... .+.+ ++.++..+|+.+..++.+++|||||+ |++++++++.+|+++||||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 161 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDE 161 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 4443210 0111 23457778888888999999999999 8999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 440 p~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 Pt~~LD~~~~~~l~~-~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 216 (490)
T PRK10938 162 PFDGLDVASRQQLAE-LLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAET 216 (490)
T ss_pred CcccCCHHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEe
Confidence 999999999999999 55556666889999999987 6789999999999987653
No 158
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.91 E-value=2.6e-24 Score=251.42 Aligned_cols=167 Identities=19% Similarity=0.237 Sum_probs=136.6
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c------------cc-c
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S------------KA-G 381 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a------------~~-G 381 (835)
.|++++||++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+- . +. -
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 10 PLLCARSISKQYSGVEVLKGIDFTLHAG-EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred ceEEEEeEEEEeCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 47999999999988665 999999999 99999999999999999999 665321 0 11 1
Q ss_pred eeecCCCCC--CchH-----------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCC
Q 003258 382 LYLPAKNHP--RLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (835)
Q Consensus 382 ~~vP~~~~~--~i~~-----------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~ 441 (835)
.|+|+.... .+.+ +..++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt 168 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPT 168 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 366665311 1112 23456777888888999999999999 899999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
+|||+.....+.. ++..+.+.|.++|++||+.+ +..+|++++.+.+|.+..
T Consensus 169 ~~LD~~~~~~l~~-~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~ 220 (510)
T PRK15439 169 ASLTPAETERLFS-RIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIAL 220 (510)
T ss_pred CCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999 55556666899999999987 667999999999998754
No 159
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.91 E-value=3.4e-24 Score=230.86 Aligned_cols=168 Identities=19% Similarity=0.173 Sum_probs=132.3
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------c---------------
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------S--------------- 378 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m---------a--------------- 378 (835)
||+++|++++|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+- +
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPG-RVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 5789999999987665 999999999 99999999999999999999 665432 0
Q ss_pred ---ccceeecCCCC--CCchHH-------------------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHH
Q 003258 379 ---KAGLYLPAKNH--PRLPWF-------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILE 427 (835)
Q Consensus 379 ---~~G~~vP~~~~--~~i~~~-------------------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~ 427 (835)
+...++|+... ..+.+. ..++..+|+....++.+++|||||+ |++++++
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 159 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARV 159 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 11235555431 111222 2344556676677889999999999 8999999
Q ss_pred Hc---------CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 428 LV---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 428 la---------~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++ .+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++.+.+.+|.+...
T Consensus 160 l~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 160 LAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH 236 (272)
T ss_pred HhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence 99 5999999999999999999999999554433334889999999987 5579999999999987643
No 160
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.6e-24 Score=232.79 Aligned_cols=169 Identities=12% Similarity=0.107 Sum_probs=132.0
Q ss_pred CeEEEeeeeeecCCc------ee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c-----------
Q 003258 325 SEMTVGSLSKGISDF------PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S----------- 378 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~------~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a----------- 378 (835)
++++++||++.|+++ .+ ++||++.+| ++++|+||||||||||||+| |++.+. .
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKN-KVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 578999999999764 23 999999999 99999999999999999999 554321 0
Q ss_pred ------ccceeecCCCCC---CchH---------------------HHHHHHHcCCc-ccccCCcccchHHHH-HHHHHH
Q 003258 379 ------KAGLYLPAKNHP---RLPW---------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDIL 426 (835)
Q Consensus 379 ------~~G~~vP~~~~~---~i~~---------------------~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~~ 426 (835)
+.-.|+|+.... ...+ ++.++..+++. +..++.+++|||||+ |+++++
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 112356665310 1111 12345556663 467889999999999 899999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 427 ~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++.+|+++||||||+|||+.....+...+.+...+.++|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999998554443445889999999987 6789999999999987644
No 161
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.5e-24 Score=231.73 Aligned_cols=166 Identities=20% Similarity=0.168 Sum_probs=130.5
Q ss_pred EEEeeeeeecCC-----cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c-------------
Q 003258 327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S------------- 378 (835)
Q Consensus 327 l~~~~ls~~y~~-----~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a------------- 378 (835)
++++||++.|++ .++ ++||++.+| ++++|+||||||||||||+| |++.+- .
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDG-SYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 789999999974 234 999999999 99999999999999999999 664321 0
Q ss_pred ---ccceeecCCCC---CCchHH---------------------HHHHHHcCCc-ccccCCcccchHHHH-HHHHHHHHc
Q 003258 379 ---KAGLYLPAKNH---PRLPWF---------------------DLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (835)
Q Consensus 379 ---~~G~~vP~~~~---~~i~~~---------------------d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~~~la 429 (835)
+.-.|+|+... ....+. +.++..+|+. ...++.+++|||||+ |++++++++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 161 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 11236666531 111111 2334556776 356889999999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
.+|+++||||||+|||+.....+...+ ..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLF-KKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999944 555556889999999987 5679999999999987654
No 162
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.91 E-value=3.9e-24 Score=227.80 Aligned_cols=167 Identities=17% Similarity=0.175 Sum_probs=131.1
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------------------
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------- 377 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------------- 377 (835)
++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+-
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAG-EKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 357899999987555 999999999 99999999999999999999 554320
Q ss_pred ------cccceeecCCCCC--CchH----------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHH
Q 003258 378 ------SKAGLYLPAKNHP--RLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDIL 426 (835)
Q Consensus 378 ------a~~G~~vP~~~~~--~i~~----------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~ 426 (835)
.+.-.++|+.... ..++ +.+++..+|+.+.+++.+++|||||+ |+++++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 159 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR 159 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence 1112345554311 1111 12345566777778889999999999 899999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 427 ~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T TIGR03005 160 ALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ 228 (252)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999998555544445889999999987 5579999999999987643
No 163
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.91 E-value=4.1e-24 Score=220.15 Aligned_cols=157 Identities=22% Similarity=0.276 Sum_probs=122.2
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------------------cccceeec
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------------------a~~G~~vP 385 (835)
++++||++.|+++.+ ++||++.+| ++++|+||||+||||||++| |+..+- .+...|+|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAG-EALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 357899999987665 999999999 99999999999999999999 554321 01122444
Q ss_pred CCCCC--CchH---------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHH
Q 003258 386 AKNHP--RLPW---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (835)
Q Consensus 386 ~~~~~--~i~~---------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~ 447 (835)
+.... ..++ ++.++..+|+....++.+.+||+||+ |++++++++.+|+++||||||+|+|+.
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 159 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159 (201)
T ss_pred cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 43211 1112 33456677887778899999999999 899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccc
Q 003258 448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTR 485 (835)
Q Consensus 448 ~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~ 485 (835)
....+...+ ..+.+.+.|+|++||+.. +..++++...
T Consensus 160 ~~~~l~~~l-~~~~~~g~tiii~sH~~~~~~~~~~~~~~ 197 (201)
T cd03231 160 GVARFAEAM-AGHCARGGMVVLTTHQDLGLSEAGARELD 197 (201)
T ss_pred HHHHHHHHH-HHHHhCCCEEEEEecCchhhhhccceeEe
Confidence 999999844 445666889999999865 6667766543
No 164
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=4.8e-24 Score=224.40 Aligned_cols=166 Identities=16% Similarity=0.157 Sum_probs=132.1
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhc-----------------ccceeecC
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------KAGLYLPA 386 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma-----------------~~G~~vP~ 386 (835)
+.++|+++.|+++.+ ++||++.+| ++++|+||||+|||||||+| |++.+-+ +.-.++|+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEG-EFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 357899999987666 999999999 99999999999999999999 5543210 11134555
Q ss_pred CCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCC
Q 003258 387 KNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (835)
Q Consensus 387 ~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~ 442 (835)
.... .+++ ++.++..+|+...+++.+..||+||+ |++++++++.+|+++||||||+
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~ 159 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLG 159 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 4311 1111 22345667888888999999999999 8999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 443 GTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 443 glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|+|+.....+...+.+ +.+ .++|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 160 gLD~~~~~~l~~~l~~-~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~ 212 (232)
T cd03300 160 ALDLKLRKDMQLELKR-LQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQI 212 (232)
T ss_pred cCCHHHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence 9999999999995554 554 4899999999987 5789999999999987654
No 165
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.91 E-value=3.8e-24 Score=249.67 Aligned_cols=167 Identities=18% Similarity=0.188 Sum_probs=135.5
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------h-------------cccc
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M-------------SKAG 381 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------m-------------a~~G 381 (835)
.|++++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+ . .+.-
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPG-RVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 47899999999987655 999999999 99999999999999999999 55432 1 0112
Q ss_pred eeecCCCC--CCchH-------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCc
Q 003258 382 LYLPAKNH--PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (835)
Q Consensus 382 ~~vP~~~~--~~i~~-------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~ 433 (835)
.|+|+... ..+++ +..++..+|+.+..++.+++|||||+ |++++++++.+|+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 161 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESK 161 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 35565421 00111 23456677888788899999999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
++||||||+|||+.....+.. ++..+.+.+.|+|++|||.+ +..+|++++.+.+|++..
T Consensus 162 lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~ 221 (501)
T PRK10762 162 VIIMDEPTDALTDTETESLFR-VIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA 221 (501)
T ss_pred EEEEeCCcCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 999999999999999999998 55566666889999999987 678999999999998754
No 166
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.4e-24 Score=226.54 Aligned_cols=166 Identities=17% Similarity=0.238 Sum_probs=133.8
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------------------cccc
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAG 381 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m---------------------a~~G 381 (835)
||.++|+++.|++... ++++.|..| ++++++|||||||||+|++| ||..+- .+.|
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~G-e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSG-ELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCC-cEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 6788999999988665 899999999 99999999999999999999 444321 0112
Q ss_pred eeecCCC--CCCchHH-----------------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 382 LYLPAKN--HPRLPWF-----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 382 ~~vP~~~--~~~i~~~-----------------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
|+.++. ...++++ .+++..+.+++..++++..|||||+ |+++|++++.+|++|
T Consensus 81 -fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vL 159 (345)
T COG1118 81 -FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVL 159 (345)
T ss_pred -EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeE
Confidence 333321 1122223 3446667778888999999999999 899999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
|||||+++||..-+..|-.-+.+...+.|.|++++|||.+ ...+|++++.+.+|.++.
T Consensus 160 LLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieq 218 (345)
T COG1118 160 LLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ 218 (345)
T ss_pred eecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeee
Confidence 9999999999999999988565554555999999999976 667999999999998764
No 167
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=4.3e-24 Score=219.75 Aligned_cols=155 Identities=18% Similarity=0.193 Sum_probs=121.7
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hccccee
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLY 383 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~~G~~ 383 (835)
|+.++|+++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+ ..+. .|
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i-~~ 78 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAG-GLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQL-CF 78 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhhe-EE
Confidence 5789999999987666 999999999 99999999999999999999 55422 0112 24
Q ss_pred ecCCCCC--CchH----------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCC
Q 003258 384 LPAKNHP--RLPW----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (835)
Q Consensus 384 vP~~~~~--~i~~----------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~gl 444 (835)
+|+.... .+++ ++.++..+++.+..++.+.+||+||+ |++++++++.+|+++||||||+|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~L 158 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVAL 158 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccc
Confidence 5544211 1222 23345566776667888999999999 899999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccc
Q 003258 445 DPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD 483 (835)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~ 483 (835)
|+.....+...+.+ +.+.+.|+|++||+.+...-||..
T Consensus 159 D~~~~~~l~~~l~~-~~~~~~tiii~sh~~~~~~~~d~~ 196 (200)
T PRK13540 159 DELSLLTIITKIQE-HRAKGGAVLLTSHQDLPLNKADYE 196 (200)
T ss_pred CHHHHHHHHHHHHH-HHHcCCEEEEEeCCchhccccchh
Confidence 99999999995554 566688999999998866556543
No 168
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.3e-24 Score=229.44 Aligned_cols=166 Identities=19% Similarity=0.259 Sum_probs=131.4
Q ss_pred eEEEeeeeeecC-Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh----------------cccceeec
Q 003258 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYLP 385 (835)
Q Consensus 326 ~l~~~~ls~~y~-~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m----------------a~~G~~vP 385 (835)
+++++||++.|+ ++.+ ++||++.+| ++++|+||||||||||||+| |++.+. ...-.|+|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~ 84 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGG-SIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVP 84 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEec
Confidence 688999999995 4545 999999999 99999999999999999999 665321 01123566
Q ss_pred CCCCC----C--------c------h-----------HHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 386 AKNHP----R--------L------P-----------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 386 ~~~~~----~--------i------~-----------~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
+.... . + + .+..++..+|+....++.+.+|||||+ |++++++++.+|+++
T Consensus 85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 164 (272)
T PRK15056 85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVI 164 (272)
T ss_pred cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 55210 0 0 0 123456777888788999999999999 899999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++.+.+ +|.+...
T Consensus 165 llDEPt~~LD~~~~~~l~~-~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~ 222 (272)
T PRK15056 165 LLDEPFTGVDVKTEARIIS-LLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLAS 222 (272)
T ss_pred EEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence 9999999999999999999 55556666889999999986 67889987655 7877543
No 169
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.91 E-value=7.1e-24 Score=226.64 Aligned_cols=169 Identities=19% Similarity=0.170 Sum_probs=133.5
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh----------------h--------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M-------- 377 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~----------------m-------- 377 (835)
.|++++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+ +
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPG-EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 47899999999987655 999999999 99999999999999999999 55421 1
Q ss_pred ----cccceeecCCCCC----CchH----------------------HHHHHHHcCCc-ccccCCcccchHHHH-HHHHH
Q 003258 378 ----SKAGLYLPAKNHP----RLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDI 425 (835)
Q Consensus 378 ----a~~G~~vP~~~~~----~i~~----------------------~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~ 425 (835)
.+...|+|+.... .+.. +++++..+|+. ...++.+++|||||+ |+++|
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~la 163 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIA 163 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHH
Confidence 0112466665410 1111 12345667775 367899999999999 89999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 003258 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (835)
Q Consensus 426 ~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el-~~~~~~~~~~~n~~v~~~ 494 (835)
++++.+|+++||||||+|||+.....+...+.+...+.|.|+|++||+.+. ..+|++++.+.+|++...
T Consensus 164 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 164 RNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 999999999999999999999999999995554434458899999999884 568999999999988643
No 170
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.6e-24 Score=240.41 Aligned_cols=151 Identities=17% Similarity=0.154 Sum_probs=121.5
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----------------------cccceeecCCCCC--CchH-
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGLYLPAKNHP--RLPW- 394 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-----------------------a~~G~~vP~~~~~--~i~~- 394 (835)
++||++.+| ++++|+||||||||||||+| |++.+- .+.-.|+|+.... .+++
T Consensus 46 ~isl~i~~G-ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~ 124 (400)
T PRK10070 46 DASLAIEEG-EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVL 124 (400)
T ss_pred eEEEEEcCC-CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHH
Confidence 999999999 99999999999999999999 555321 0122466766421 1111
Q ss_pred --------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHH
Q 003258 395 --------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALA 453 (835)
Q Consensus 395 --------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~ 453 (835)
+.+++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+||||..+..+.
T Consensus 125 enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~ 204 (400)
T PRK10070 125 DNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQ 204 (400)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHH
Confidence 22346677888888999999999999 899999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 454 TSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 454 ~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
..+.+...+.+.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 205 ~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~ 245 (400)
T PRK10070 205 DELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ 245 (400)
T ss_pred HHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEe
Confidence 9555443445889999999987 567999999999998754
No 171
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=7.2e-24 Score=213.18 Aligned_cols=152 Identities=25% Similarity=0.356 Sum_probs=112.9
Q ss_pred EEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchH-----H-HHHH
Q 003258 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW-----F-DLIL 399 (835)
Q Consensus 328 ~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~-----~-d~i~ 399 (835)
+++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ +|...|.+|...+.. . ....
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~i~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~~~~ 72 (173)
T cd03230 2 EVRNLSKRYGKKTALDDISLTVEKG-EIYGLLGPNGAGKTTLIKII--------LGLLKPDSGEIKVLGKDIKKEPEEVK 72 (173)
T ss_pred EEEEEEEEECCeeeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHH--------hCCCCCCCeEEEECCEEcccchHhhh
Confidence 57899999987555 999999999 99999999999999999999 554444444211100 0 0000
Q ss_pred HHcCC-cc--------cccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEE
Q 003258 400 ADIGD-HQ--------SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV 469 (835)
Q Consensus 400 ~~ig~-~~--------~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~vii 469 (835)
..++. .+ .+...+. ||+||+ |++++++++.+|+++||||||+|||+.....+.. ++..+.++|.++|+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~~~-LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~g~tiii 150 (173)
T cd03230 73 RRIGYLPEEPSLYENLTVRENLK-LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWE-LLRELKKEGKTILL 150 (173)
T ss_pred ccEEEEecCCccccCCcHHHHhh-cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHCCCEEEE
Confidence 11110 00 0011111 999999 7999999999999999999999999999999999 45555555889999
Q ss_pred Eecchh-HHhhhcccccccCCc
Q 003258 470 TTHYAD-LSCLKDKDTRFENAA 490 (835)
Q Consensus 470 tTH~~e-l~~~~~~~~~~~n~~ 490 (835)
+||+.+ +..+|++.+.+.+|.
T Consensus 151 ~th~~~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 151 SSHILEEAERLCDRVAILNNGR 172 (173)
T ss_pred ECCCHHHHHHhCCEEEEEeCCC
Confidence 999987 556899998888775
No 172
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=6e-24 Score=230.66 Aligned_cols=166 Identities=15% Similarity=0.195 Sum_probs=131.8
Q ss_pred EEEeeeeeecCC-----cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------------------
Q 003258 327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (835)
Q Consensus 327 l~~~~ls~~y~~-----~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------------- 377 (835)
++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQG-KYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 789999999963 124 999999999 99999999999999999999 554321
Q ss_pred --cccceeecCCCC-CCc--hH---------------------HHHHHHHcCCc-ccccCCcccchHHHH-HHHHHHHHc
Q 003258 378 --SKAGLYLPAKNH-PRL--PW---------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (835)
Q Consensus 378 --a~~G~~vP~~~~-~~i--~~---------------------~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~~~la 429 (835)
.+.-.++|+... ..+ ++ +..++..+|+. +..++.+.+|||||+ |++++++++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 011236666531 111 11 22446667876 567889999999999 799999999
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
.+|++|||||||+|||+.....+.. ++..+.+ .|.|+|++||+.+ +..+|+++..+.+|.+...
T Consensus 162 ~~p~illlDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~ 227 (286)
T PRK13646 162 MNPDIIVLDEPTAGLDPQSKRQVMR-LLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQ 227 (286)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999 5555654 5899999999987 5679999999999988754
No 173
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.91 E-value=6.2e-24 Score=213.66 Aligned_cols=152 Identities=22% Similarity=0.285 Sum_probs=114.7
Q ss_pred EEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchH-------H
Q 003258 327 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW-------F 395 (835)
Q Consensus 327 l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~-------~ 395 (835)
++++|+++.|++ ..+ ++||++.+| ++++|+||||+||||||++| +|...|..|...+.. .
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~ 71 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPG-ESLAIIGPSGSGKSTLARLI--------LGLLRPTSGRVRLDGADISQWDP 71 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCC-CEEEEECCCCCCHHHHHHHH--------HhccCCCCCeEEECCEEcccCCH
Confidence 357899999975 333 999999999 99999999999999999999 666555555222110 0
Q ss_pred HHHHHHcCC---c-----ccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcE
Q 003258 396 DLILADIGD---H-----QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL 466 (835)
Q Consensus 396 d~i~~~ig~---~-----~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~ 466 (835)
..+...++. . ..+..++ ||+||+ |++++++++.+|+++||||||+|||+.....+.. ++..+.+.+.|
T Consensus 72 ~~~~~~i~~~~q~~~~~~~tv~~~l--LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~~~~t 148 (173)
T cd03246 72 NELGDHVGYLPQDDELFSGSIAENI--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ-AIAALKAAGAT 148 (173)
T ss_pred HHHHhheEEECCCCccccCcHHHHC--cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHH-HHHHHHhCCCE
Confidence 011111111 0 0111111 999999 8999999999999999999999999999999999 55555666889
Q ss_pred EEEEecchhHHhhhcccccccCCc
Q 003258 467 AVVTTHYADLSCLKDKDTRFENAA 490 (835)
Q Consensus 467 viitTH~~el~~~~~~~~~~~n~~ 490 (835)
+|++||+.+...+|++++.+.+|.
T Consensus 149 ii~~sh~~~~~~~~d~v~~l~~G~ 172 (173)
T cd03246 149 RIVIAHRPETLASADRILVLEDGR 172 (173)
T ss_pred EEEEeCCHHHHHhCCEEEEEECCC
Confidence 999999988667899988888775
No 174
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.91 E-value=5.4e-24 Score=222.16 Aligned_cols=164 Identities=22% Similarity=0.308 Sum_probs=128.9
Q ss_pred EEEeeeeeecCC----cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh----------------------
Q 003258 327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (835)
Q Consensus 327 l~~~~ls~~y~~----~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m---------------------- 377 (835)
++++|+++.|++ ..+ ++||++.+| ++++|+||||+|||||+++| |+..+-
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G-~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPG-EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 678999999974 334 999999999 99999999999999999999 543220
Q ss_pred cccceeecCCCCC--Cch----------------------HHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 378 SKAGLYLPAKNHP--RLP----------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 378 a~~G~~vP~~~~~--~i~----------------------~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
.+...++|+.... .++ .+..++..+|+.+..++.+.+||+||+ |+.++++++.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p 160 (220)
T TIGR02982 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP 160 (220)
T ss_pred HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 0112345544310 011 133456677887788999999999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCce
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT 491 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v 491 (835)
+++|||||++|+|+.....+...+.+...+.+.|+|++||++++..+|+++..+.+|.+
T Consensus 161 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 161 KLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999995444433458999999999987789999988887753
No 175
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.91 E-value=6.3e-24 Score=222.38 Aligned_cols=164 Identities=12% Similarity=0.159 Sum_probs=125.8
Q ss_pred CCeEEEeeeeeecCC---cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------c
Q 003258 324 NSEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S 378 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~---~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a 378 (835)
.+|++++|+++.|++ ..+ ++||++.+| ++++|+||||+||||||++| |++.+- .
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPG-EVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 478999999999974 234 999999999 99999999999999999999 554321 0
Q ss_pred ccceeecCCCCC-CchHH------------------------HHHHHHc--CCcccccCCcccchHHHH-HHHHHHHHcC
Q 003258 379 KAGLYLPAKNHP-RLPWF------------------------DLILADI--GDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (835)
Q Consensus 379 ~~G~~vP~~~~~-~i~~~------------------------d~i~~~i--g~~~~~~~~lstfSgg~~-rl~~~~~la~ 430 (835)
+.-.++|+.... ..++. ..++..+ |....++..+.+|||||+ |++++++++.
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 112344544310 00111 1223334 566667888999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCc
Q 003258 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA 490 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~ 490 (835)
+|+++||||||+|||+.....+...+.+ +.+ +.|+|++||+.++...|++++.+.+|.
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~ 225 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYD-WPE-RRTVLVIAHRLSTVERADQILVLDGGR 225 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHH-HcC-CCEEEEEECCHHHHHhCCEEEEecCCc
Confidence 9999999999999999999999995554 555 589999999988656799888888765
No 176
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.91 E-value=4e-24 Score=225.69 Aligned_cols=159 Identities=20% Similarity=0.260 Sum_probs=121.9
Q ss_pred eecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------------------cccceeec-CCCC--
Q 003258 334 KGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP-AKNH-- 389 (835)
Q Consensus 334 ~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------------------a~~G~~vP-~~~~-- 389 (835)
+.|+++++ ++||++.+| ++++|+|||||||||||++| |++.+- .+...|+| +...
T Consensus 29 ~~~~~~~il~~vs~~i~~G-e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 29 RKYREVEALKGISFTIEKG-EIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred cccCCeeeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence 44555555 999999999 99999999999999999999 554321 01123444 3221
Q ss_pred CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHH
Q 003258 390 PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (835)
Q Consensus 390 ~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~ 447 (835)
..++. +..++..+|+.+..++.+.+||+||+ |+.++++++.+|+++||||||+|||+.
T Consensus 108 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 187 (236)
T cd03267 108 WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV 187 (236)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 11111 12335556777778889999999999 799999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 448 ~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
....+...+.+...+.++|+|++||+.+ +..+|++++.+.+|.+..
T Consensus 188 ~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 188 AQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 9999999555443445789999999987 568999999999988753
No 177
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=4.4e-24 Score=215.76 Aligned_cols=153 Identities=23% Similarity=0.342 Sum_probs=114.4
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchH---------H
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW---------F 395 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~---------~ 395 (835)
++++|+++.|+++.+ ++||++.+| ++++|+||||+|||||||+| +|.+.|.+|...+.. .
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G-~~~~i~G~nGsGKSTLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAG-EIVALLGPSGSGKSTLLRCI--------AGLEEPDSGSILIDGEDLTDLEDEL 71 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCceEEEECCEEccccchhH
Confidence 357899999987655 999999999 99999999999999999999 665555554221100 0
Q ss_pred HHHHHHcCC---------cccccCCccc-chHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcC-
Q 003258 396 DLILADIGD---------HQSLEQNLST-FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR- 463 (835)
Q Consensus 396 d~i~~~ig~---------~~~~~~~lst-fSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~- 463 (835)
......++. ...+...+.. ||+||+ |+.++++++.+|+++||||||+|+|+.....+.. ++..+.+.
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~-~l~~~~~~~ 150 (178)
T cd03229 72 PPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRA-LLKSLQAQL 150 (178)
T ss_pred HHHhhcEEEEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhc
Confidence 111111110 0111222222 999999 8999999999999999999999999999999999 55555655
Q ss_pred CcEEEEEecchh-HHhhhcccccccCC
Q 003258 464 VGLAVVTTHYAD-LSCLKDKDTRFENA 489 (835)
Q Consensus 464 ~~~viitTH~~e-l~~~~~~~~~~~n~ 489 (835)
+.|+|++||+.+ +..+|++++.+.+|
T Consensus 151 ~~tiii~sH~~~~~~~~~d~i~~l~~g 177 (178)
T cd03229 151 GITVVLVTHDLDEAARLADRVVVLRDG 177 (178)
T ss_pred CCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 789999999987 45589988887765
No 178
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.91 E-value=5.7e-24 Score=224.58 Aligned_cols=166 Identities=18% Similarity=0.216 Sum_probs=132.5
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----------------cccceeecC
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 386 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-----------------a~~G~~vP~ 386 (835)
++++|+++.|+++.+ ++||++.+| ++++|+||||+|||||||+| |++.+. .+...|+|+
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTG-SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 357899999987666 999999999 99999999999999999999 554321 011235555
Q ss_pred CCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCC
Q 003258 387 KNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (835)
Q Consensus 387 ~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~ 442 (835)
.... ..++ +++++..+++.+..++.+..||+||+ |++++++++.+|+++|||||++
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~ 159 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFG 159 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 5311 0111 23456677777778899999999999 7999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHHHHhcC-CcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 443 GTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 443 glDp~~~~aL~~all~~l~~~-~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|+|+.....+...+. .+.+. ++|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 160 ~LD~~~~~~~~~~l~-~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~ 212 (237)
T TIGR00968 160 ALDAKVRKELRSWLR-KLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQI 212 (237)
T ss_pred cCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence 999999999999444 45554 789999999988 5789999999999988643
No 179
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.91 E-value=6.8e-24 Score=225.15 Aligned_cols=166 Identities=22% Similarity=0.237 Sum_probs=124.0
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhh--hhh-------------------c-cc
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM-------------------S-KA 380 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli--~~m-------------------a-~~ 380 (835)
|++++||++.|+++++ ++||++.+| ++++|+|||||||||||++| |+. .+. . ..
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPG-EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 5789999999987655 999999999 99999999999999999999 663 111 0 01
Q ss_pred ceeecCCCCCCch-------------------------------HHHHHHHHcCCc-ccccCCcc-cchHHHH-HHHHHH
Q 003258 381 GLYLPAKNHPRLP-------------------------------WFDLILADIGDH-QSLEQNLS-TFSGHIS-RIVDIL 426 (835)
Q Consensus 381 G~~vP~~~~~~i~-------------------------------~~d~i~~~ig~~-~~~~~~ls-tfSgg~~-rl~~~~ 426 (835)
-.++|+... .++ .++.++..+++. +..++.++ .|||||+ |+++++
T Consensus 80 i~~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lar 158 (248)
T PRK09580 80 IFMAFQYPV-EIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 158 (248)
T ss_pred eEEEecCch-hccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHH
Confidence 123444321 000 011223333442 23445554 7999999 899999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh-h-hcccccccCCceeec
Q 003258 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-L-KDKDTRFENAATEFS 494 (835)
Q Consensus 427 ~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~-~-~~~~~~~~n~~v~~~ 494 (835)
+++.+|+++||||||+|||+.....+.. ++..+.+.++|+|++||+.++.. + +++++.+.+|++...
T Consensus 159 al~~~p~illLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 159 MAVLEPELCILDESDSGLDIDALKIVAD-GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEe
Confidence 9999999999999999999999999998 55567777899999999988554 4 788888888887543
No 180
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.6e-24 Score=255.14 Aligned_cols=164 Identities=21% Similarity=0.207 Sum_probs=126.4
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------ccc-ceeecCCCC----C
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKA-GLYLPAKNH----P 390 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a~~-G~~vP~~~~----~ 390 (835)
||.++||+++|+++.+ ++||+|.+| ++++|+||||||||||||+| |++.+- ... ..++|+... .
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~G-e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~ 79 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPG-QKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQP 79 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCC
Confidence 6789999999998766 999999999 99999999999999999999 554321 000 012333210 0
Q ss_pred CchH---------------------------------------------HHHHHHHcCCc-ccccCCcccchHHHH-HHH
Q 003258 391 RLPW---------------------------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIV 423 (835)
Q Consensus 391 ~i~~---------------------------------------------~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~ 423 (835)
.+++ +..++..+|+. ...++++++|||||+ |++
T Consensus 80 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~ 159 (638)
T PRK10636 80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLN 159 (638)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHH
Confidence 0110 11234556665 467889999999999 899
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 424 ~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++++++.+|++|||||||+|||+.....|...+.+ .+++||++|||.+ +..+|++++.+.+|.+..+
T Consensus 160 LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~----~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~ 227 (638)
T PRK10636 160 LAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKS----YQGTLILISHDRDFLDPIVDKIIHIEQQSLFEY 227 (638)
T ss_pred HHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEe
Confidence 99999999999999999999999998877763333 3679999999987 6779999999999987543
No 181
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.6e-24 Score=225.82 Aligned_cols=168 Identities=22% Similarity=0.308 Sum_probs=130.4
Q ss_pred CCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------c----------------
Q 003258 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S---------------- 378 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------a---------------- 378 (835)
..|++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- +
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 5 EAIIETENLNLFYTDFKALNNINIKILKN-SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred CceEEEeeeEEEeCCceeecceeeEEcCC-CEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 468999999999987655 999999999 99999999999999999999 665421 0
Q ss_pred ----ccceeecCCCCC-CchHHHHH----------------------HHHcCC----cccccCCcccchHHHH-HHHHHH
Q 003258 379 ----KAGLYLPAKNHP-RLPWFDLI----------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDIL 426 (835)
Q Consensus 379 ----~~G~~vP~~~~~-~i~~~d~i----------------------~~~ig~----~~~~~~~lstfSgg~~-rl~~~~ 426 (835)
+...|+|+.... ..++++++ +..+++ .+..++.+++|||||+ |+++++
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lar 163 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIAR 163 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHH
Confidence 012345554311 12222222 233333 2345778899999999 899999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 427 ~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 164 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 230 (254)
T PRK14273 164 TLAIEPNVILMDEPTSALDPISTGKIEELII-NLKE-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEE 230 (254)
T ss_pred HHHcCCCEEEEeCCCcccCHHHHHHHHHHHH-HHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999554 4554 689999999988 5678999999999988654
No 182
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=6.1e-24 Score=248.26 Aligned_cols=168 Identities=15% Similarity=0.169 Sum_probs=136.4
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh---h-------------------cc
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---M-------------------SK 379 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~---m-------------------a~ 379 (835)
.|++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ - .+
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAG-EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 48999999999987665 999999999 99999999999999999999 66642 0 01
Q ss_pred cceeecCCCC--CCchH------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 380 AGLYLPAKNH--PRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 380 ~G~~vP~~~~--~~i~~------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
.-.|+|+... ..+++ +..++..+|+.+..++.+++|||||+ |+++|++++.+|
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p 162 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence 1235555431 00111 23456677887778999999999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++||||||+|||+.....+.. ++..+.+.+.++|++||+.+ +..+|++++.+.+|++...
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~ 224 (506)
T PRK13549 163 RLLILDEPTASLTESETAVLLD-IIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGT 224 (506)
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeee
Confidence 9999999999999999999999 55555666889999999987 6679999999999987654
No 183
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.91 E-value=8.3e-24 Score=227.49 Aligned_cols=168 Identities=16% Similarity=0.153 Sum_probs=131.2
Q ss_pred eEEEeeeeeecC---------Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh----------------
Q 003258 326 EMTVGSLSKGIS---------DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------- 377 (835)
Q Consensus 326 ~l~~~~ls~~y~---------~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m---------------- 377 (835)
||+++||++.|+ ++.+ ++||++.+| ++++|+||||||||||||+| |+..+-
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSG-ETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 688999999997 3444 999999999 99999999999999999999 554320
Q ss_pred ------cccceeecCCCCC----CchH----------------------HHHHHHHcCCc-ccccCCcccchHHHH-HHH
Q 003258 378 ------SKAGLYLPAKNHP----RLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIV 423 (835)
Q Consensus 378 ------a~~G~~vP~~~~~----~i~~----------------------~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~ 423 (835)
.+...|+|+.... .... ++.++..+|+. +..++.+..||+||+ |++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 0112355554310 0111 23345666775 567889999999999 899
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 424 ~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++++++.+|++|||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence 9999999999999999999999999999998555443345889999999987 5569999999999987644
No 184
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=8.6e-24 Score=227.26 Aligned_cols=169 Identities=19% Similarity=0.263 Sum_probs=130.4
Q ss_pred CCCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh----------------------
Q 003258 323 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 377 (835)
Q Consensus 323 g~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m---------------------- 377 (835)
+..|+.++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+.
T Consensus 18 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 18 KEHILEVKDLSIYYGEKRAVNDISMDIEKH-AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred CCceEEEEEEEEEeCCceeeeceEEEEcCC-CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 4568999999999987665 999999999 99999999999999999999 654200
Q ss_pred ----cccceeecCCCCC-CchHHHHH----------------------HHHcCCc----ccccCCcccchHHHH-HHHHH
Q 003258 378 ----SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDI 425 (835)
Q Consensus 378 ----a~~G~~vP~~~~~-~i~~~d~i----------------------~~~ig~~----~~~~~~lstfSgg~~-rl~~~ 425 (835)
.+.-.|+|+.... ..+.++++ +..++.. ...++.+++|||||+ |++++
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~la 176 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIA 176 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHH
Confidence 0112355554311 01222222 2333332 235688999999999 89999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 426 ~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++++.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 177 ral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 244 (268)
T PRK14248 177 RTLAMKPAVLLLDEPASALDPISNAKIEE-LITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEY 244 (268)
T ss_pred HHHhCCCCEEEEcCCCcccCHHHHHHHHH-HHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999988 5555555 589999999987 6779999999999988654
No 185
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7.7e-24 Score=247.62 Aligned_cols=168 Identities=17% Similarity=0.196 Sum_probs=136.0
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------h------------c-ccc
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M------------S-KAG 381 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------m------------a-~~G 381 (835)
.|++++|++++|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+ . . +.-
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPG-EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 47899999999987665 999999999 99999999999999999999 65432 0 0 112
Q ss_pred eeecCCCC--CCchH----------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcC
Q 003258 382 LYLPAKNH--PRLPW----------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (835)
Q Consensus 382 ~~vP~~~~--~~i~~----------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~ 430 (835)
.|+|+... ..+.+ +..++..+|+.+..++.+++|||||+ |++++++++.
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~ 162 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML 162 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 35665531 00111 22346677887788999999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+|+++||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|.+.+.
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~ 226 (510)
T PRK09700 163 DAKVIIMDEPTSSLTNKEVDYLFL-IMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCS 226 (510)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeee
Confidence 999999999999999999999999 55566666899999999987 6679999999999987543
No 186
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.1e-23 Score=220.83 Aligned_cols=166 Identities=14% Similarity=0.142 Sum_probs=124.0
Q ss_pred eEEEeeeeeecCC-cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cccce
Q 003258 326 EMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (835)
Q Consensus 326 ~l~~~~ls~~y~~-~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G~ 382 (835)
.++++|+++.|++ +.+ ++||++.+| ++++|+||||||||||||+| |++.+. ...-.
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPG-ETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 4679999999974 334 999999999 99999999999999999999 554321 11123
Q ss_pred eecCCCCC-CchHHHH---------------HHHHcC-----------CcccccCCcccchHHHH-HHHHHHHHcCCCcE
Q 003258 383 YLPAKNHP-RLPWFDL---------------ILADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (835)
Q Consensus 383 ~vP~~~~~-~i~~~d~---------------i~~~ig-----------~~~~~~~~lstfSgg~~-rl~~~~~la~~~~L 434 (835)
|+|+.... ...+.++ .+..++ ......+.+..||+||+ |+.++++++.+|++
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 55554310 0011111 112222 22334456789999999 89999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+||||||+|||+.....+...+ ..+.+ +.|+|++||+.+....|++++.+.+|.+...
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l-~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEAL-EKLMK-GRTSIIIAHRLSTIKNADKILVLDDGKIIEE 218 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHH-HHhcC-CCEEEEEecCHHHHhhCCEEEEEeCCeEEEe
Confidence 9999999999999999999844 45554 7899999999886567999999999987653
No 187
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=9.5e-24 Score=225.69 Aligned_cols=167 Identities=18% Similarity=0.224 Sum_probs=130.5
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh------h------------------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M------------------ 377 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------m------------------ 377 (835)
.+++++|+++.|+++.+ ++||++.+| ++++|+|||||||||||++| |+..+ -
T Consensus 11 ~~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 11 PQIKVENLNLWYGEKQALKNVSMQIPKN-SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eeEEEeeeEEEeCCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 47899999999987655 999999999 99999999999999999999 66532 0
Q ss_pred --cccceeecCCCCC-CchHH---------------------HHHHHHcCCc----ccccCCcccchHHHH-HHHHHHHH
Q 003258 378 --SKAGLYLPAKNHP-RLPWF---------------------DLILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (835)
Q Consensus 378 --a~~G~~vP~~~~~-~i~~~---------------------d~i~~~ig~~----~~~~~~lstfSgg~~-rl~~~~~l 428 (835)
.+...|+|+.... ..+.. .+++..+|+. +.+++.+.+|||||+ |+++++++
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 169 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTL 169 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHH
Confidence 0112355554311 11211 2234445542 345788999999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 429 a~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+.+|+++||||||+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 170 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 170 AVKPKIILFDEPTSALDPISTARIED-LIMNLKK-DYTIVIVTHNMQQAARISDYTGFFLMGELIEF 234 (258)
T ss_pred HcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999998 4545554 789999999987 5678999999999987654
No 188
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.90 E-value=1.5e-23 Score=212.55 Aligned_cols=144 Identities=23% Similarity=0.216 Sum_probs=114.2
Q ss_pred CCeEEEeeeeeecCCcee-ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCC------------
Q 003258 324 NSEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP------------ 390 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~------------ 390 (835)
..|++++|+++.| .+ ++||++.+| ++++|+||||+|||||||+| +|...|.+|..
T Consensus 2 ~~~l~~~~l~~~~---~l~~vs~~i~~G-~~~~i~G~nGsGKSTLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~ 69 (182)
T cd03215 2 EPVLEVRGLSVKG---AVRDVSFEVRAG-EIVGIAGLVGNGQTELAEAL--------FGLRPPASGEITLDGKPVTRRSP 69 (182)
T ss_pred CcEEEEeccEEEe---eecceEEEEcCC-cEEEEECCCCCCHHHHHHHH--------hCCCCCCCceEEECCEECCccCH
Confidence 4589999999999 44 999999999 99999999999999999999 44443433311
Q ss_pred ----------------------CchHHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHH
Q 003258 391 ----------------------RLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (835)
Q Consensus 391 ----------------------~i~~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~ 447 (835)
.+...+++... ..||+||+ |++++++++.+|+++||||||+|+|+.
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~-----------~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~ 138 (182)
T cd03215 70 RDAIRAGIAYVPEDRKREGLVLDLSVAENIALS-----------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVG 138 (182)
T ss_pred HHHHhCCeEEecCCcccCcccCCCcHHHHHHHH-----------hhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHH
Confidence 11122222110 01999999 799999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCce
Q 003258 448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAAT 491 (835)
Q Consensus 448 ~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v 491 (835)
....+...+ ..+.+.+.|+|++||+.+ +..+|++++.+.+|.+
T Consensus 139 ~~~~l~~~l-~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 139 AKAEIYRLI-RELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHH-HHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999944 555556889999999976 7789999998888753
No 189
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=9.7e-24 Score=224.78 Aligned_cols=167 Identities=20% Similarity=0.240 Sum_probs=129.1
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh-----h-----------h--------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-----L-----------M-------- 377 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~-----~-----------m-------- 377 (835)
++|+++||++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+.. + +
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 5 PKMEARGLSFFYGDFQALHDISLEFEQN-QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred cEEEEeeeEEEECCeeeecceeEEEeCC-CEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 57899999999987655 999999999 99999999999999999999 6642 0 0
Q ss_pred --cccceeecCCCCC-CchHHHHH----------------------HHHcCCcc----cccCCcccchHHHH-HHHHHHH
Q 003258 378 --SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDHQ----SLEQNLSTFSGHIS-RIVDILE 427 (835)
Q Consensus 378 --a~~G~~vP~~~~~-~i~~~d~i----------------------~~~ig~~~----~~~~~lstfSgg~~-rl~~~~~ 427 (835)
.+...|+|+.... ..++.+++ +..+|+.+ ..++.+.+|||||+ |++++++
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 163 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARA 163 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHH
Confidence 0112355655311 01222222 33344422 35678899999999 8999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 164 l~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 164 LAVEPEVLLMDEPASALDPIATQKIEELI-HELKA-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhc-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999844 45554 689999999987 5689999999999987643
No 190
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.90 E-value=1.2e-23 Score=224.51 Aligned_cols=168 Identities=14% Similarity=0.180 Sum_probs=130.9
Q ss_pred eEEEeeeeeecCCcee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh----h-----------------cccce
Q 003258 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----M-----------------SKAGL 382 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~----m-----------------a~~G~ 382 (835)
+++++||+++|+...+ ++||++.+| ++++|+||||+|||||||+| |+..+ - .+...
T Consensus 4 ~l~~~~l~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 4 QIELRNIALQAAQPLVHGVSLTLQRG-RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EEEEeCeEEEeccceecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 6889999999943334 999999999 99999999999999999999 66543 0 01123
Q ss_pred eecCCCCCC----chH-------------------HHHHHHHcCCcc---cccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 383 YLPAKNHPR----LPW-------------------FDLILADIGDHQ---SLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 383 ~vP~~~~~~----i~~-------------------~d~i~~~ig~~~---~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
|+|+..... ..+ +..++..+|+.. .+++.+.+||+||+ |++++++++.+|+++
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lL 162 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFI 162 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 566653111 111 122355566654 36788999999999 899999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||||||+|||+.....+...+.+...+.|.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 163 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~ 222 (254)
T PRK10418 163 IADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQ 222 (254)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999998554443445889999999987 5578999999999988643
No 191
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.90 E-value=8.1e-24 Score=241.68 Aligned_cols=167 Identities=15% Similarity=0.104 Sum_probs=131.0
Q ss_pred CCeEEEeeeeeecCCc---ee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhcccce--------eecCCC-
Q 003258 324 NSEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGL--------YLPAKN- 388 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~---~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma~~G~--------~vP~~~- 388 (835)
..|++++||++.|++. .+ ++||++.+| ++++|+||||+||||||++| |++.+- .|. +++...
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~G-EivgIiGpNGSGKSTLLkiLaGLl~P~--sGeI~I~G~~~~i~~~~~ 95 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEG-EIVGIIGLNGSGKSTLSNLIAGVTMPN--KGTVDIKGSAALIAISSG 95 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCC-CEEEEEcCCCCCHHHHHHHHhCCCCCC--ceEEEECCEeeeEEeccc
Confidence 3589999999999873 33 999999999 99999999999999999999 554321 110 000000
Q ss_pred -CCCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCC
Q 003258 389 -HPRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (835)
Q Consensus 389 -~~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glD 445 (835)
...+++ ++.++..+|+.+.+++.+.+|||||+ |++++++++.+|++|||||||+|||
T Consensus 96 l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD 175 (549)
T PRK13545 96 LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGD 175 (549)
T ss_pred cCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCC
Confidence 001111 12345667777788999999999999 8999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 446 PSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 446 p~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+.....+... +..+.+.|+|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 176 ~~sr~~Llel-L~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~ 224 (549)
T PRK13545 176 QTFTKKCLDK-MNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEY 224 (549)
T ss_pred HHHHHHHHHH-HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999984 4556667899999999987 6678999999999987643
No 192
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=7.7e-24 Score=216.98 Aligned_cols=155 Identities=14% Similarity=0.178 Sum_probs=119.7
Q ss_pred eEEEeeeeeecCCcee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c--------ccceeecCCC
Q 003258 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S--------KAGLYLPAKN 388 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a--------~~G~~vP~~~ 388 (835)
|+.++|++++|+++.+ ++||++.+| ++++|+|||||||||||++| |+..+- . +.-.++|+..
T Consensus 1 ~l~~~~l~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFDLSITFLPS-AITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred CeEEEEeeEEECCcEEEEEEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCc
Confidence 5789999999987666 999999999 99999999999999999999 554321 0 0112344332
Q ss_pred CC--CchHH----------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhH
Q 003258 389 HP--RLPWF----------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (835)
Q Consensus 389 ~~--~i~~~----------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~ 449 (835)
.. ..++. ..++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||+|+|+...
T Consensus 80 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~ 159 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENR 159 (195)
T ss_pred CCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 11 11111 2334566777778899999999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchhHHhhhcc
Q 003258 450 VALATSILQYLRDRVGLAVVTTHYADLSCLKDK 482 (835)
Q Consensus 450 ~aL~~all~~l~~~~~~viitTH~~el~~~~~~ 482 (835)
..+...+ ....+.+.|+|++||+.+....++.
T Consensus 160 ~~l~~~l-~~~~~~~~tiii~sh~~~~i~~~~~ 191 (195)
T PRK13541 160 DLLNNLI-VMKANSGGIVLLSSHLESSIKSAQI 191 (195)
T ss_pred HHHHHHH-HHHHhCCCEEEEEeCCccccchhhe
Confidence 9998844 4455668999999999875555553
No 193
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.1e-23 Score=224.00 Aligned_cols=166 Identities=16% Similarity=0.239 Sum_probs=130.1
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh------hc------------------
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------MS------------------ 378 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------ma------------------ 378 (835)
+++++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+ -+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDN-TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 5889999999987655 999999999 99999999999999999999 76531 00
Q ss_pred ccceeecCCCC--CCchHHHH-----------------------HHHHcCCc----ccccCCcccchHHHH-HHHHHHHH
Q 003258 379 KAGLYLPAKNH--PRLPWFDL-----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (835)
Q Consensus 379 ~~G~~vP~~~~--~~i~~~d~-----------------------i~~~ig~~----~~~~~~lstfSgg~~-rl~~~~~l 428 (835)
..-.|+|+... ..+++.++ ++..+|+. ...++.+.+|||||+ |+++++++
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 161 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARAL 161 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 11135565531 11222222 23344543 246788999999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 429 a~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+.+|+++||||||+|+|+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 162 ~~~p~lllLDEP~~~LD~~~~~~l~~~l-~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14247 162 AFQPEVLLADEPTANLDPENTAKIESLF-LELKK-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEW 226 (250)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEE
Confidence 9999999999999999999999999955 44554 789999999988 5679999999999987653
No 194
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.90 E-value=7.3e-24 Score=236.60 Aligned_cols=163 Identities=20% Similarity=0.219 Sum_probs=130.3
Q ss_pred eeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----------------------cccceeecC
Q 003258 331 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGLYLPA 386 (835)
Q Consensus 331 ~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-----------------------a~~G~~vP~ 386 (835)
||++.|++..+++||++.+| ++++|+||||||||||||+| |+..+- .+.-.++|+
T Consensus 4 ~l~~~~~~~~~~isl~i~~G-ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q 82 (354)
T TIGR02142 4 RFSKRLGDFSLDADFTLPGQ-GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQ 82 (354)
T ss_pred EEEEEECCEEEEEEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEec
Confidence 78999988667999999999 99999999999999999999 654321 011235555
Q ss_pred CCCC--CchH-------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCC
Q 003258 387 KNHP--RLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (835)
Q Consensus 387 ~~~~--~i~~-------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~gl 444 (835)
.... .+++ +++++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+||
T Consensus 83 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 83 EARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred CCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 5311 1122 23456677888888999999999999 899999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 213 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAA 213 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEE
Confidence 9999999999555443444889999999987 5678999999999987643
No 195
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1e-23 Score=221.79 Aligned_cols=164 Identities=15% Similarity=0.169 Sum_probs=124.0
Q ss_pred EEEeeeeeecCCc--ee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cccce
Q 003258 327 MTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (835)
Q Consensus 327 l~~~~ls~~y~~~--~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G~ 382 (835)
++++|+++.|++. .+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAG-ETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 3578999999764 34 999999999 99999999999999999999 554321 01123
Q ss_pred eecCCCC-CCchHHHHH------------------------HHHc--CCcccccCCcccchHHHH-HHHHHHHHcCCCcE
Q 003258 383 YLPAKNH-PRLPWFDLI------------------------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (835)
Q Consensus 383 ~vP~~~~-~~i~~~d~i------------------------~~~i--g~~~~~~~~lstfSgg~~-rl~~~~~la~~~~L 434 (835)
|+|+... ...++.+++ +..+ |.....++.+.+||+||+ |+.++++++.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 4554431 011222221 1111 334445677889999999 89999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
+||||||+|||+.....+.. ++..+.+ +.++|++||+.+....|++++.+.+|++..
T Consensus 160 llLDEP~~~LD~~~~~~l~~-~l~~~~~-~~tii~~sh~~~~~~~~d~v~~l~~G~i~~ 216 (234)
T cd03251 160 LILDEATSALDTESERLVQA-ALERLMK-NRTTFVIAHRLSTIENADRIVVLEDGKIVE 216 (234)
T ss_pred EEEeCccccCCHHHHHHHHH-HHHHhcC-CCEEEEEecCHHHHhhCCEEEEecCCeEee
Confidence 99999999999999999998 5555554 789999999988556699999999998764
No 196
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.2e-23 Score=227.37 Aligned_cols=167 Identities=15% Similarity=0.120 Sum_probs=131.6
Q ss_pred eEEEeeeeeecCCc---ee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------ccc
Q 003258 326 EMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (835)
Q Consensus 326 ~l~~~~ls~~y~~~---~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~ 380 (835)
|++++||++.|++. .+ ++||++.+| ++++|+||||+||||||++| |+..+. .+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKG-EWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 78999999999742 23 999999999 99999999999999999999 554321 111
Q ss_pred ceeecCCCC---CCchHH---------------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 381 GLYLPAKNH---PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 381 G~~vP~~~~---~~i~~~---------------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
..|+|+... ....+. +.++..+|+.+..++++.+|||||+ |++++++++.+|+++
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ll 162 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEII 162 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 235565531 111222 2344556777778889999999999 799999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
||||||+|||+.....+.. ++..+.+ .|.|+|++||+.+....|++++.+.+|.+...
T Consensus 163 llDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~ 221 (277)
T PRK13642 163 ILDESTSMLDPTGRQEIMR-VIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKE 221 (277)
T ss_pred EEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999 4445555 48999999999886667999999999987643
No 197
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.90 E-value=1e-23 Score=222.46 Aligned_cols=165 Identities=16% Similarity=0.097 Sum_probs=124.0
Q ss_pred EEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cccce
Q 003258 327 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (835)
Q Consensus 327 l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G~ 382 (835)
++++|+++.|++ .++ ++||++.+| ++++|+||||+||||||++| |+..+. .+.-.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPG-EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 357899999963 334 999999999 99999999999999999999 554321 01123
Q ss_pred eecCCCCC-CchHHHHH---------------HHHc-----------CCcccccCCcccchHHHH-HHHHHHHHcCCCcE
Q 003258 383 YLPAKNHP-RLPWFDLI---------------LADI-----------GDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (835)
Q Consensus 383 ~vP~~~~~-~i~~~d~i---------------~~~i-----------g~~~~~~~~lstfSgg~~-rl~~~~~la~~~~L 434 (835)
|+|+.... ..++.+++ +... +....+++.+.+|||||+ |++++++++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 55655311 01111211 1111 223334667899999999 79999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+||||||+|||+.....+...+. .+.+ +.|+|++||+.+....|++++.+.+|.+..+
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~-~~~~-~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~ 217 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMH-DICA-GRTVIIIAHRLSTVKNADRIIVMEKGRIVEQ 217 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHH-HhcC-CCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999554 4554 7899999999886567999999999988654
No 198
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.6e-23 Score=224.27 Aligned_cols=168 Identities=20% Similarity=0.214 Sum_probs=130.4
Q ss_pred CCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh----------------h-------
Q 003258 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M------- 377 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~----------------m------- 377 (835)
.++++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ +
T Consensus 11 ~~~l~~~~l~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFHALKNINLDIAKN-QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeCCeEEeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 468999999999987655 999999999 99999999999999999999 66531 0
Q ss_pred ---cccceeecCCCCC-CchHHH----------------------HHHHHcCCc----ccccCCcccchHHHH-HHHHHH
Q 003258 378 ---SKAGLYLPAKNHP-RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDIL 426 (835)
Q Consensus 378 ---a~~G~~vP~~~~~-~i~~~d----------------------~i~~~ig~~----~~~~~~lstfSgg~~-rl~~~~ 426 (835)
.+...|+|+.... ..+..+ +++..+|+. ...++.+.+|||||+ |+++++
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 169 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIAR 169 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 0112245554310 112222 233444542 346788899999999 899999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 427 ~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 170 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~-~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 170 GIAIRPEVLLLDEPCSALDPISTGRIEELIT-ELKQ-DYTVVIVTHNMQQAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHCCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999988444 4554 689999999987 5679999999999988654
No 199
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.90 E-value=1e-23 Score=216.54 Aligned_cols=147 Identities=22% Similarity=0.227 Sum_probs=115.5
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c-----------ccceeec
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-----------KAGLYLP 385 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a-----------~~G~~vP 385 (835)
++++|+++.|++..+ ++||++.+| ++++|+||||+|||||||+| |+..+- . +.-.|+|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAG-EALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 357899999987665 999999999 99999999999999999999 554321 0 1123455
Q ss_pred CCCCC--CchH-----------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCC
Q 003258 386 AKNHP--RLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (835)
Q Consensus 386 ~~~~~--~i~~-----------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glD 445 (835)
+.... .+++ +..++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||+|||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 159 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 54211 1111 23345667777778899999999999 8999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003258 446 PSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (835)
Q Consensus 446 p~~~~aL~~all~~l~~~~~~viitTH~~e 475 (835)
+.....+...+.+ +.+.+.|+|++||+..
T Consensus 160 ~~~~~~l~~~l~~-~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 160 KAGVALLAGLLRA-HLARGGIVLLTTHQDL 188 (198)
T ss_pred HHHHHHHHHHHHH-HHhCCCEEEEEEcccc
Confidence 9999999985554 5566889999999863
No 200
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.9e-23 Score=230.57 Aligned_cols=167 Identities=21% Similarity=0.194 Sum_probs=132.9
Q ss_pred eEEEeeeeeecCCc-----ee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh------------------h---
Q 003258 326 EMTVGSLSKGISDF-----PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------M--- 377 (835)
Q Consensus 326 ~l~~~~ls~~y~~~-----~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------------------m--- 377 (835)
+|+++||++.|++. .+ ++||++.+| ++++|+||||||||||+++| |++.. +
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~G-e~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQG-EVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 58899999999762 34 999999999 99999999999999999999 77641 0
Q ss_pred --c----ccceeecCCCCC----CchH----------------------HHHHHHHcCCcc---cccCCcccchHHHH-H
Q 003258 378 --S----KAGLYLPAKNHP----RLPW----------------------FDLILADIGDHQ---SLEQNLSTFSGHIS-R 421 (835)
Q Consensus 378 --a----~~G~~vP~~~~~----~i~~----------------------~d~i~~~ig~~~---~~~~~lstfSgg~~-r 421 (835)
. +...++|++... .+.+ +.+++..+|+.+ .+++++.+|||||+ |
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR 161 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR 161 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence 0 123567776421 1111 223466677753 46789999999999 8
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchhH-HhhhcccccccCCceeec
Q 003258 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (835)
Q Consensus 422 l~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~el-~~~~~~~~~~~n~~v~~~ 494 (835)
++++++++.+|+|||+||||+|||+.....+.. ++..+.+ .|.|+|++|||+++ ..+|+++..+.+|.+...
T Consensus 162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~-lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIE-LLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999 4445554 68999999999884 579999999999987643
No 201
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.5e-23 Score=224.16 Aligned_cols=169 Identities=20% Similarity=0.252 Sum_probs=130.9
Q ss_pred CCCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh------hc---------------
Q 003258 323 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------MS--------------- 378 (835)
Q Consensus 323 g~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------ma--------------- 378 (835)
++.|++++|+++.|+++.+ ++||++.+| ++++|+|||||||||||++| |++.+ -+
T Consensus 9 ~~~~l~i~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 9 KQEVYQINGMNLWYGQHHALKNINLSIPEN-EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred CCceEEEeeEEEEECCeeeEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 3568999999999987655 999999999 99999999999999999999 66531 01
Q ss_pred -----ccceeecCCCCC-CchHHH----------------------HHHHHcCCc----ccccCCcccchHHHH-HHHHH
Q 003258 379 -----KAGLYLPAKNHP-RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDI 425 (835)
Q Consensus 379 -----~~G~~vP~~~~~-~i~~~d----------------------~i~~~ig~~----~~~~~~lstfSgg~~-rl~~~ 425 (835)
+.-.|+|+.... ...+++ .++..+|+. +.+++.+.+||+||+ |++++
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~la 167 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIA 167 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 011345554311 001111 223445553 245788899999999 89999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 426 ~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++++.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 168 ral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 235 (259)
T PRK14274 168 RALATNPDVLLMDEPTSALDPVSTRKIEE-LILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVEC 235 (259)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999988 4445555 689999999987 5679999999999988654
No 202
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.2e-23 Score=220.49 Aligned_cols=167 Identities=20% Similarity=0.224 Sum_probs=129.3
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhh---hh---hc-----------------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA---SL---MS----------------- 378 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli---~~---ma----------------- 378 (835)
.|++++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+. .. -+
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEK-SVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCC-CEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 47899999999987655 999999999 99999999999999999999 542 11 00
Q ss_pred ---ccceeecCCCCC-CchHH----------------------HHHHHHcCCc----ccccCCcccchHHHH-HHHHHHH
Q 003258 379 ---KAGLYLPAKNHP-RLPWF----------------------DLILADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (835)
Q Consensus 379 ---~~G~~vP~~~~~-~i~~~----------------------d~i~~~ig~~----~~~~~~lstfSgg~~-rl~~~~~ 427 (835)
+...|+|+.... ..++. +.++..+|+. +..++.+.+|||||+ |++++++
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARA 160 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHH
Confidence 112355555311 01111 2234445553 245778899999999 8999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++.+|+++||||||+|||+.....+...+. .+.+ ++|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~ 226 (250)
T PRK14245 161 MAVSPSVLLMDEPASALDPISTAKVEELIH-ELKK-DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEY 226 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999554 4554 789999999987 5689999999999988644
No 203
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.7e-23 Score=224.98 Aligned_cols=169 Identities=17% Similarity=0.215 Sum_probs=131.4
Q ss_pred CCCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-----h-c---------------
Q 003258 323 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M-S--------------- 378 (835)
Q Consensus 323 g~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-----m-a--------------- 378 (835)
..++|+++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ . +
T Consensus 16 ~~~~l~~~nl~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 16 TEIKMRARDVSVFYGEKQALFDVDLDIPEK-TVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CCceEEEEeEEEEECCEEEEEEEEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 3468999999999987655 999999999 99999999999999999999 77642 0 0
Q ss_pred -----ccceeecCCCCC-CchHHH-----------------------HHHHHcCCcc----cccCCcccchHHHH-HHHH
Q 003258 379 -----KAGLYLPAKNHP-RLPWFD-----------------------LILADIGDHQ----SLEQNLSTFSGHIS-RIVD 424 (835)
Q Consensus 379 -----~~G~~vP~~~~~-~i~~~d-----------------------~i~~~ig~~~----~~~~~lstfSgg~~-rl~~ 424 (835)
+.-.|+|+.... ..+.++ .++..+|+.. ..++.+.+|||||+ |+++
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 174 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCI 174 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence 111355554311 011222 2344455532 35678899999999 8999
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 425 ~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++++.+|++|||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 175 aral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~ 243 (267)
T PRK14235 175 ARAIAVSPEVILMDEPCSALDPIATAKVEE-LIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEV 243 (267)
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999998 5555555 689999999987 5678999999999988643
No 204
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.3e-23 Score=245.19 Aligned_cols=167 Identities=17% Similarity=0.171 Sum_probs=134.3
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------------cccc
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAG 381 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------------a~~G 381 (835)
.|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.-
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAG-QVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 47899999999987655 999999999 99999999999999999999 654320 0112
Q ss_pred eeecCCCC--CCchH------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcE
Q 003258 382 LYLPAKNH--PRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (835)
Q Consensus 382 ~~vP~~~~--~~i~~------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~L 434 (835)
.|+|+... ..+++ +..++..+|+....++.+++|||||+ |++++++++.+|++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l 161 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARV 161 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 35665431 01111 22345667777777899999999999 89999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
+||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|.+..
T Consensus 162 llLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 162 IAFDEPTSSLSAREIEQLFR-VIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred EEEcCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999998 55556667899999999987 567899999999998754
No 205
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.90 E-value=2.3e-23 Score=221.76 Aligned_cols=169 Identities=19% Similarity=0.247 Sum_probs=128.8
Q ss_pred CCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhh--hhh-------------------cc
Q 003258 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM-------------------SK 379 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli--~~m-------------------a~ 379 (835)
+.|++++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+. .+. .+
T Consensus 5 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 5 KPILEIKNLHASVNENEILKGLNLSINKG-EIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred CceEEEEeEEEEeCCEEeeecceeEEcCC-cEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 358999999999987555 999999999 99999999999999999999 652 110 01
Q ss_pred cc-eeecCCCCC--CchH----------------------------HHHHHHHcCCc-ccccCCcc-cchHHHH-HHHHH
Q 003258 380 AG-LYLPAKNHP--RLPW----------------------------FDLILADIGDH-QSLEQNLS-TFSGHIS-RIVDI 425 (835)
Q Consensus 380 ~G-~~vP~~~~~--~i~~----------------------------~d~i~~~ig~~-~~~~~~ls-tfSgg~~-rl~~~ 425 (835)
.| .++|+.... .+.. +..++..+|+. ...++.+. .|||||+ |++++
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 163 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEIL 163 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHH
Confidence 11 234443210 0000 12345556665 34667776 5999999 89999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh-h-hcccccccCCceeec
Q 003258 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-L-KDKDTRFENAATEFS 494 (835)
Q Consensus 426 ~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~-~-~~~~~~~~n~~v~~~ 494 (835)
++++.+|+++||||||+|||+.....+.. ++..+.+.+.|+|++||+.++.. + |++++.+.+|.+...
T Consensus 164 ~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 164 QMALLDSELAILDETDSGLDIDALKIIAE-GINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999998 45455566899999999988554 5 788888999988654
No 206
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.6e-23 Score=231.18 Aligned_cols=169 Identities=15% Similarity=0.096 Sum_probs=133.1
Q ss_pred CeEEEeeeeeecCC----------ce-e-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------
Q 003258 325 SEMTVGSLSKGISD----------FP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------- 377 (835)
Q Consensus 325 ~~l~~~~ls~~y~~----------~~-v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------- 377 (835)
.+|+++||++.|+. .. + ++||+|.+| ++++|+|+||||||||+++| |++.+-
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERG-KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 47899999999962 22 3 999999999 99999999999999999999 554320
Q ss_pred --------cccceeecCCCCC----CchH----------------------HHHHHHHcCCc-ccccCCcccchHHHH-H
Q 003258 378 --------SKAGLYLPAKNHP----RLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-R 421 (835)
Q Consensus 378 --------a~~G~~vP~~~~~----~i~~----------------------~d~i~~~ig~~-~~~~~~lstfSgg~~-r 421 (835)
...-.++|++... .+.+ +.+++..+|+. +..++.+.+|||||+ |
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 0112466666410 1111 23446677775 467899999999999 8
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccccCCceeec
Q 003258 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (835)
Q Consensus 422 l~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~-~~~~~~~~~~n~~v~~~ 494 (835)
++++++++.+|+|||+||||++||+.....+...+.+...+.|.|+|++|||+.+. .+|+++..+.+|.+...
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~ 236 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK 236 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999955544344589999999998854 68999999999988644
No 207
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.90 E-value=1.5e-23 Score=231.71 Aligned_cols=169 Identities=17% Similarity=0.155 Sum_probs=132.6
Q ss_pred CCeEEEeeeeeecCC-------------ce-e-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh----------
Q 003258 324 NSEMTVGSLSKGISD-------------FP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------- 377 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~-------------~~-v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m---------- 377 (835)
..+|+++||++.|+. .. + ++||+|.+| ++++|+|+||||||||+|+| |++.+-
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEG-ETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 357899999999962 22 3 999999999 99999999999999999999 554320
Q ss_pred ------------cccceeecCCCC----CCchHHH-----------------------HHHHHcCCc-ccccCCcccchH
Q 003258 378 ------------SKAGLYLPAKNH----PRLPWFD-----------------------LILADIGDH-QSLEQNLSTFSG 417 (835)
Q Consensus 378 ------------a~~G~~vP~~~~----~~i~~~d-----------------------~i~~~ig~~-~~~~~~lstfSg 417 (835)
...-.++|++.. ..+.+.+ +++..+|+. +..++++..|||
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 112346676631 1122222 235566663 457899999999
Q ss_pred HHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchhH-HhhhcccccccCCceeec
Q 003258 418 HIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (835)
Q Consensus 418 g~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~el-~~~~~~~~~~~n~~v~~~ 494 (835)
||+ |+++|++++.+|+|||+||||+|||+..+..+.. ++..+.+ .+.|+|++|||+++ ..+|+++..+.+|.+...
T Consensus 165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~ 243 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVN-LLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL 243 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999 8999999999999999999999999999999999 5555554 58999999999885 468999999999987643
No 208
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.90 E-value=7.8e-24 Score=217.92 Aligned_cols=158 Identities=22% Similarity=0.242 Sum_probs=117.8
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccce--eecCCCCCCc--------hH
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGL--YLPAKNHPRL--------PW 394 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~--~vP~~~~~~i--------~~ 394 (835)
+.++|+++.|++..+ ++||++.+| ++++|+||||+|||||||+| +|. +.|..|...+ ..
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~p~~G~i~~~g~~~~~~~~ 71 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKG-EVHALMGPNGSGKSTLAKTI--------MGHPKYEVTEGEILFKGEDITDLPP 71 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCC-cEEEEECCCCCCHHHHHHHH--------hCCCcCCCCccEEEECCEECCcCCH
Confidence 357899999987655 999999999 99999999999999999999 333 1233221100 00
Q ss_pred HHH-------------HHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHH
Q 003258 395 FDL-------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460 (835)
Q Consensus 395 ~d~-------------i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l 460 (835)
... .+..+...+.+......||+||+ |++++++++.+|+++||||||+|+|+.....+...+. .+
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~-~~ 150 (200)
T cd03217 72 EERARLGIFLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVIN-KL 150 (200)
T ss_pred HHHhhCcEEEeecChhhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH-HH
Confidence 000 00000011112333468999999 8999999999999999999999999999999988454 56
Q ss_pred hcCCcEEEEEecchhHHh--hhcccccccCCceeec
Q 003258 461 RDRVGLAVVTTHYADLSC--LKDKDTRFENAATEFS 494 (835)
Q Consensus 461 ~~~~~~viitTH~~el~~--~~~~~~~~~n~~v~~~ 494 (835)
.+.+.|+|++||+.+... +|++.+.+.+|.+...
T Consensus 151 ~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~ 186 (200)
T cd03217 151 REEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKS 186 (200)
T ss_pred HHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEE
Confidence 666889999999988655 7999999999987654
No 209
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.90 E-value=2.2e-23 Score=210.61 Aligned_cols=156 Identities=21% Similarity=0.224 Sum_probs=117.8
Q ss_pred EEEeeeeeecCCc--ee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchH-----H-H
Q 003258 327 MTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW-----F-D 396 (835)
Q Consensus 327 l~~~~ls~~y~~~--~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~-----~-d 396 (835)
++++|+++.|++. ++ ++||++.+| ++++|+||||+|||||||++ +|+..|.+|...+.. . .
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~ 71 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQG-EKIALLGRSGSGKSTLLQLL--------TGDLKPQQGEITLDGVPVSDLEK 71 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCC-CEEEEECCCCCCHHHHHHHH--------hccCCCCCCEEEECCEEHHHHHH
Confidence 3578999999764 34 999999999 99999999999999999999 666555555322110 0 0
Q ss_pred HHHHHcCC-cc-------cccCC-cccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcE
Q 003258 397 LILADIGD-HQ-------SLEQN-LSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL 466 (835)
Q Consensus 397 ~i~~~ig~-~~-------~~~~~-lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~ 466 (835)
.+-..++. .+ .+..+ +.+||+||+ |+.++++++.+|+++||||||+|||+.....+...+ ..+. ++.|
T Consensus 72 ~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l-~~~~-~~~t 149 (178)
T cd03247 72 ALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI-FEVL-KDKT 149 (178)
T ss_pred HHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH-HHHc-CCCE
Confidence 01111110 00 11111 788999999 799999999999999999999999999999999944 4555 4789
Q ss_pred EEEEecchhHHhhhcccccccCCceee
Q 003258 467 AVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 467 viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
+|++||+.++...|++.+.+.+|.+..
T Consensus 150 ii~~sh~~~~~~~~d~~~~l~~g~i~~ 176 (178)
T cd03247 150 LIWITHHLTGIEHMDKILFLENGKIIM 176 (178)
T ss_pred EEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 999999988666799998888887653
No 210
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.90 E-value=1.7e-23 Score=220.74 Aligned_cols=165 Identities=15% Similarity=0.128 Sum_probs=122.6
Q ss_pred EEEeeeeeecCC---cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cccc
Q 003258 327 MTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (835)
Q Consensus 327 l~~~~ls~~y~~---~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G 381 (835)
++++|+++.|++ .++ ++||++.+| ++++|+|||||||||||++| |++.+. .+.-
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPG-KTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQI 79 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCC-CEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhE
Confidence 357899999964 233 899999999 99999999999999999999 554321 0112
Q ss_pred eeecCCCCC-CchHHHHH---------------HHHc-----------CCcccccCCcccchHHHH-HHHHHHHHcCCCc
Q 003258 382 LYLPAKNHP-RLPWFDLI---------------LADI-----------GDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (835)
Q Consensus 382 ~~vP~~~~~-~i~~~d~i---------------~~~i-----------g~~~~~~~~lstfSgg~~-rl~~~~~la~~~~ 433 (835)
.|+|+.... ..++.+++ .... +.....+..+..|||||+ |+.++++++.+|+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 80 GLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 344544210 01111111 1111 223345667889999999 7999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
++||||||+|||+.....+.. ++..+. .+.++|++||+.+...+|++++.+.+|.+..+
T Consensus 160 llllDEP~~gLD~~~~~~l~~-~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~ 218 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQE-ALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQ 218 (238)
T ss_pred EEEEeCccccCCHHHHHHHHH-HHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEe
Confidence 999999999999999999999 445555 68899999999886568999999999987653
No 211
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.3e-23 Score=209.19 Aligned_cols=150 Identities=21% Similarity=0.307 Sum_probs=111.5
Q ss_pred EEEeeeeeecCCc--ee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchH-------H
Q 003258 327 MTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW-------F 395 (835)
Q Consensus 327 l~~~~ls~~y~~~--~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~-------~ 395 (835)
++++|+++.|++. .+ ++||++.+| ++++|+||||+|||||||+| +|+..|.+|...+.. .
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G-~~~~l~G~nGsGKstLl~~i--------~G~~~~~~G~i~~~g~~~~~~~~ 71 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPG-EKVAIVGPSGSGKSTLLKLL--------LRLYDPTSGEILIDGVDLRDLDL 71 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCC-CEEEEECCCCCCHHHHHHHH--------HcCCCCCCCEEEECCEEhhhcCH
Confidence 3578999999764 34 999999999 99999999999999999999 665555554221110 0
Q ss_pred HHHHHHcCC---c-----ccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcE
Q 003258 396 DLILADIGD---H-----QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL 466 (835)
Q Consensus 396 d~i~~~ig~---~-----~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~ 466 (835)
......++. . ..+..++ ||+||+ |+.++++++.+|+++||||||+|||+.....+.. ++..+.+ +.+
T Consensus 72 ~~~~~~i~~~~~~~~~~~~t~~e~l--LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~~~-~~t 147 (171)
T cd03228 72 ESLRKNIAYVPQDPFLFSGTIRENI--LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE-ALRALAK-GKT 147 (171)
T ss_pred HHHHhhEEEEcCCchhccchHHHHh--hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHH-HHHHhcC-CCE
Confidence 001111110 0 0111111 999999 7999999999999999999999999999999999 5555554 689
Q ss_pred EEEEecchhHHhhhcccccccCC
Q 003258 467 AVVTTHYADLSCLKDKDTRFENA 489 (835)
Q Consensus 467 viitTH~~el~~~~~~~~~~~n~ 489 (835)
+|++||+.+....|++.+.+.+|
T Consensus 148 ii~~sh~~~~~~~~d~~~~l~~g 170 (171)
T cd03228 148 VIVIAHRLSTIRDADRIIVLDDG 170 (171)
T ss_pred EEEEecCHHHHHhCCEEEEEcCC
Confidence 99999998855558888877765
No 212
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.7e-23 Score=224.55 Aligned_cols=169 Identities=20% Similarity=0.248 Sum_probs=130.7
Q ss_pred CCCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh--h--------------h------
Q 003258 323 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L--------------M------ 377 (835)
Q Consensus 323 g~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~--~--------------m------ 377 (835)
+..++.++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+.. . +
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSK-YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 4568999999999987655 999999999 99999999999999999999 7642 1 0
Q ss_pred ----cccceeecCCCCCC-chHHH----------------------HHHHHcCC----cccccCCcccchHHHH-HHHHH
Q 003258 378 ----SKAGLYLPAKNHPR-LPWFD----------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDI 425 (835)
Q Consensus 378 ----a~~G~~vP~~~~~~-i~~~d----------------------~i~~~ig~----~~~~~~~lstfSgg~~-rl~~~ 425 (835)
.+.-.|+|+..... .++++ .++..+|+ .+..++.+++|||||+ |++++
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 194 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA 194 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHH
Confidence 01123555553110 01111 22334444 2456788999999999 89999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 426 ~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++++.+|+++||||||+|||+.....+.. ++..+.. +.++|++||+.+ +..+|++++.+.+|.+..+
T Consensus 195 raL~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~ 262 (286)
T PRK14275 195 RTLAVEPEILLLDEPTSALDPKATAKIED-LIQELRG-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEH 262 (286)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999 4455554 589999999987 5679999999999988654
No 213
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.8e-23 Score=219.82 Aligned_cols=167 Identities=24% Similarity=0.312 Sum_probs=128.9
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------------------------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------ 377 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------------------------ 377 (835)
+++.++||++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+..+.
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 2 GKISVKDLDLFYGDFQALKKINLDIEEN-QVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred CeEEEEEEEEEECCceeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 46889999999987655 999999999 99999999999999999999 654310
Q ss_pred --cccceeecCCCCC-CchHHHHH----------------------HHHcCCc----ccccCCcccchHHHH-HHHHHHH
Q 003258 378 --SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (835)
Q Consensus 378 --a~~G~~vP~~~~~-~i~~~d~i----------------------~~~ig~~----~~~~~~lstfSgg~~-rl~~~~~ 427 (835)
.+...|+|+.... ..+.++++ +..++.. ...++++.+||+||+ |++++++
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARA 160 (250)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 0112355555311 12233322 2233322 234678899999999 8999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 161 l~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~ 226 (250)
T PRK14240 161 LAVEPEVLLMDEPTSALDPISTLKIEELI-QELKK-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEF 226 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhc-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEe
Confidence 99999999999999999999999998844 44554 789999999987 6788999999999988654
No 214
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.9e-23 Score=220.37 Aligned_cols=167 Identities=23% Similarity=0.237 Sum_probs=130.8
Q ss_pred EEEeeeeeecCCcee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhc-----------------ccceeecCC
Q 003258 327 MTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------KAGLYLPAK 387 (835)
Q Consensus 327 l~~~~ls~~y~~~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma-----------------~~G~~vP~~ 387 (835)
|.++|+++.|++..+ ++||++.+| ++++|+||||+||||||+++ |+..+-+ +.-.++|+.
T Consensus 1 l~~~~l~~~~~~~~l~~is~~i~~G-e~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 1 LKVENLSKDWKEFKLKNVSLEVERG-DYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred CeeEeEEEEeCCceeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 357899999987545 999999999 99999999999999999999 5543210 112345544
Q ss_pred CCCC--chH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCC
Q 003258 388 NHPR--LPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (835)
Q Consensus 388 ~~~~--i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~g 443 (835)
.... +.+ +..++..+|+...+++.+.+||+||+ |++++++++.+|+++||||||+|
T Consensus 80 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~g 159 (235)
T cd03299 80 YALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSA 159 (235)
T ss_pred CccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCccc
Confidence 3111 111 12345667787788999999999999 89999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 444 lDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+|+.....+...+.+...+.++|+|++||+.+ +..+|+++..+.+|.+...
T Consensus 160 LD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~ 211 (235)
T cd03299 160 LDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211 (235)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999555443344899999999987 5678999999999987643
No 215
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.1e-23 Score=222.19 Aligned_cols=167 Identities=20% Similarity=0.208 Sum_probs=129.7
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh------hc-----------------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------MS----------------- 378 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------ma----------------- 378 (835)
.+|+++||++.|++..+ ++||++.+| ++++|+||||+||||||++| |++.+ -+
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQN-GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 37889999999987655 999999999 99999999999999999999 77542 00
Q ss_pred ---ccceeecCCCCC--CchHHH-----------------------HHHHHcCCc----ccccCCcccchHHHH-HHHHH
Q 003258 379 ---KAGLYLPAKNHP--RLPWFD-----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDI 425 (835)
Q Consensus 379 ---~~G~~vP~~~~~--~i~~~d-----------------------~i~~~ig~~----~~~~~~lstfSgg~~-rl~~~ 425 (835)
+.-.|+|+.... .+++.+ +++..+|+. ...++.+.+|||||+ |++++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIA 161 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHH
Confidence 011345554311 112222 223344542 345778899999999 89999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 426 ~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++++.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 162 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 229 (253)
T PRK14267 162 RALAMKPKILLMDEPTANIDPVGTAKIEELLF-ELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEV 229 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999554 4554 589999999987 5779999999999988653
No 216
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.90 E-value=2.8e-23 Score=217.21 Aligned_cols=159 Identities=19% Similarity=0.245 Sum_probs=121.9
Q ss_pred eEEEeeeeeecCC-------cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------h--c--------
Q 003258 326 EMTVGSLSKGISD-------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M--S-------- 378 (835)
Q Consensus 326 ~l~~~~ls~~y~~-------~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------m--a-------- 378 (835)
|++++||++.|++ ..+ ++||++.+| ++++|+|||||||||||++| |++.+ . .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~ 79 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAG-ECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhc
Confidence 5789999999962 234 999999999 99999999999999999999 55322 1 0
Q ss_pred ----------ccceeecCCCCC--CchH---------------------HHHHHHHcCCccc-ccCCcccchHHHH-HHH
Q 003258 379 ----------KAGLYLPAKNHP--RLPW---------------------FDLILADIGDHQS-LEQNLSTFSGHIS-RIV 423 (835)
Q Consensus 379 ----------~~G~~vP~~~~~--~i~~---------------------~d~i~~~ig~~~~-~~~~lstfSgg~~-rl~ 423 (835)
+...|+|+.... .+.. +.+++..+|+.+. .++.+.+||+||+ |++
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~ 159 (224)
T TIGR02324 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVN 159 (224)
T ss_pred CHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHH
Confidence 112355665311 0111 1234556676654 4778999999999 899
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccc
Q 003258 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRF 486 (835)
Q Consensus 424 ~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~-~~~~~~~~~ 486 (835)
++++++.+|+++||||||+|+|+.....+.. ++..+.+.++|+|++||+.++. .+|++++.+
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 160 IARGFIADYPILLLDEPTASLDAANRQVVVE-LIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999999999999999999999999 4555666689999999998854 688877654
No 217
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.3e-23 Score=221.16 Aligned_cols=166 Identities=17% Similarity=0.150 Sum_probs=129.9
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh----------------------hccc
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------MSKA 380 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~----------------------ma~~ 380 (835)
+++++|+++.|+++.+ ++||++.+| ++++|+||||+|||||||+| |++.. ..+.
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQN-KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 5789999999987655 999999999 99999999999999999999 66421 0011
Q ss_pred ceeecCCCCC-CchH-----------------------HHHHHHHcCCc----ccccCCcccchHHHH-HHHHHHHHcCC
Q 003258 381 GLYLPAKNHP-RLPW-----------------------FDLILADIGDH----QSLEQNLSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 381 G~~vP~~~~~-~i~~-----------------------~d~i~~~ig~~----~~~~~~lstfSgg~~-rl~~~~~la~~ 431 (835)
-.|+|+.... ...+ +..++..+|+. +..++.+..||+||+ |++++++++.+
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 160 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK 160 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 2355655311 0111 12345556663 345778899999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|+++||||||+|+|+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 p~lllLDEP~~~LD~~~~~~l~~~l-~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 222 (246)
T PRK14269 161 PKLLLLDEPTSALDPISSGVIEELL-KELSH-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEF 222 (246)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHH-HHHhC-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEE
Confidence 9999999999999999999998844 44554 789999999987 6679999999999988643
No 218
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.2e-23 Score=219.16 Aligned_cols=167 Identities=16% Similarity=0.257 Sum_probs=129.7
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh--h--------------h--------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L--------------M-------- 377 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~--~--------------m-------- 377 (835)
+.++++|++++|++..+ ++||++.+| ++++|+||||||||||||+| |+.. + .
T Consensus 3 ~~l~~~nl~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFGKNHAVKDVSMDFPEN-SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeCCeeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 56899999999987655 999999999 99999999999999999999 7653 1 0
Q ss_pred --cccceeecCCCCC--CchHHH----------------------HHHHHcCCc----ccccCCcccchHHHH-HHHHHH
Q 003258 378 --SKAGLYLPAKNHP--RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDIL 426 (835)
Q Consensus 378 --a~~G~~vP~~~~~--~i~~~d----------------------~i~~~ig~~----~~~~~~lstfSgg~~-rl~~~~ 426 (835)
.+...|+|+.... .+++.+ .++..+|+. +..++.+.+||+||+ |+++++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 161 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR 161 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence 0112355665311 112222 223345543 245678899999999 799999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 427 ~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++.+|+++||||||+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..+|++...+.+|.+...
T Consensus 162 al~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14256 162 TIAVKPEVILMDEPASALDPISTLKIEE-LIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVEC 228 (252)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999998 5555655 579999999987 5679999999999987643
No 219
>PLN03073 ABC transporter F family; Provisional
Probab=99.90 E-value=1.2e-22 Score=244.38 Aligned_cols=163 Identities=17% Similarity=0.195 Sum_probs=129.2
Q ss_pred CCeEEEeeeeeecCC-cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhc---------ccceeecCCCCC
Q 003258 324 NSEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS---------KAGLYLPAKNHP 390 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~-~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma---------~~G~~vP~~~~~ 390 (835)
..+++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+.. +.| |+|+....
T Consensus 506 ~~~L~~~~ls~~y~~~~~il~~vsl~i~~G-e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~ig-yv~Q~~~~ 583 (718)
T PLN03073 506 PPIISFSDASFGYPGGPLLFKNLNFGIDLD-SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMA-VFSQHHVD 583 (718)
T ss_pred CceEEEEeeEEEeCCCCeeEeccEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEE-EEeccccc
Confidence 358999999999964 434 999999999 99999999999999999999 6654311 122 45554211
Q ss_pred Cch-------------------HHHHHHHHcCCcc-cccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhH
Q 003258 391 RLP-------------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (835)
Q Consensus 391 ~i~-------------------~~d~i~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~ 449 (835)
.+. .+..++..+|+.+ ..++++++|||||+ |++++++++.+|++|||||||+|||+...
T Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~ 663 (718)
T PLN03073 584 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAV 663 (718)
T ss_pred cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 110 1234566778764 57889999999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCcee
Q 003258 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (835)
Q Consensus 450 ~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~ 492 (835)
..+...+.++ ++|+|++|||.+ +..+|++++.+.+|.+.
T Consensus 664 ~~l~~~L~~~----~gtvIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 664 EALIQGLVLF----QGGVLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred HHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 8887755443 459999999987 66789999999999876
No 220
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=4.2e-24 Score=211.63 Aligned_cols=167 Identities=18% Similarity=0.203 Sum_probs=133.9
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhh--------------------hcc----
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASL--------------------MSK---- 379 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~--------------------ma~---- 379 (835)
|++++||+|.|+++.| ++|+.+++| .+..|+||||+||||||-+++-+.. +|+
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g-~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKG-GITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCC-ceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 6889999999999887 999999999 9999999999999999999932211 111
Q ss_pred ------------------cceeecCCCCC---CchHHHHHHHHcCCcccccCCcccchHHHHHHHH-HHHHcCCCcEEEE
Q 003258 380 ------------------AGLYLPAKNHP---RLPWFDLILADIGDHQSLEQNLSTFSGHISRIVD-ILELVSRESLVLI 437 (835)
Q Consensus 380 ------------------~G~~vP~~~~~---~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~-~~~la~~~~LlLL 437 (835)
.|-|.-..|.. ....+++.+..+++++.-++++.+|||||++.++ |+.++++.+.+||
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlL 159 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLL 159 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEe
Confidence 12221111110 1113667788889999999999999999995555 5889999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHHh-cCCcEEEEEecchhHHh-hhcccccccCCceeec
Q 003258 438 DEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLSC-LKDKDTRFENAATEFS 494 (835)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~-~~~~~viitTH~~el~~-~~~~~~~~~n~~v~~~ 494 (835)
|||.++||......++. +++.+. +.|.|++++-||.+++. |+|+++.+.||.+...
T Consensus 160 DEPLNNLDmkHsv~iMk-~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~ 217 (252)
T COG4604 160 DEPLNNLDMKHSVQIMK-ILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQ 217 (252)
T ss_pred cCcccccchHHHHHHHH-HHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEec
Confidence 99999999999999999 555554 56999999999999765 9999999999988653
No 221
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.90 E-value=2.2e-23 Score=215.03 Aligned_cols=161 Identities=18% Similarity=0.153 Sum_probs=120.1
Q ss_pred EEEeeeeeecCCc-----ee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hcccceeecCCCC-C
Q 003258 327 MTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MSKAGLYLPAKNH-P 390 (835)
Q Consensus 327 l~~~~ls~~y~~~-----~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma~~G~~vP~~~~-~ 390 (835)
++++||++.|++. .+ ++||++++| ++++|+||||+||||||++| |+..+ ..+. .|+|+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G-~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i-~~~~q~~~l~ 78 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKG-ELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSI-AYVSQEPWIQ 78 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEE-EEEecCchhc
Confidence 3578999999763 34 999999999 99999999999999999999 44432 1112 34555531 0
Q ss_pred CchHHHH--------------HHHHcCC-----------cccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCC
Q 003258 391 RLPWFDL--------------ILADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (835)
Q Consensus 391 ~i~~~d~--------------i~~~ig~-----------~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~gl 444 (835)
..+.+++ ....++. .........+||+||+ |++++++++.+|+++||||||+||
T Consensus 79 ~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~L 158 (204)
T cd03250 79 NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAV 158 (204)
T ss_pred cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 1111121 1222222 2234566789999999 899999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCC
Q 003258 445 DPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENA 489 (835)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~ 489 (835)
|+.....+...++..+.+.+.|+|++||+.+....|++++.+.+|
T Consensus 159 D~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G 203 (204)
T cd03250 159 DAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203 (204)
T ss_pred CHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCC
Confidence 999999888866665555588999999998855558888877765
No 222
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.2e-23 Score=220.65 Aligned_cols=167 Identities=19% Similarity=0.230 Sum_probs=129.4
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh------hc-----------------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------MS----------------- 378 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------ma----------------- 378 (835)
.|++++|+++.|+++.+ ++||++.+| ++++|+||||+|||||||+| |+..+ -+
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINLPIYEN-KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 57899999999987655 999999999 99999999999999999999 66432 00
Q ss_pred ---ccceeecCCCCC-CchHHHH----------------------HHHHcCCc----ccccCCcccchHHHH-HHHHHHH
Q 003258 379 ---KAGLYLPAKNHP-RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (835)
Q Consensus 379 ---~~G~~vP~~~~~-~i~~~d~----------------------i~~~ig~~----~~~~~~lstfSgg~~-rl~~~~~ 427 (835)
+.-.|+|+.... ....+++ ++..+|+. +..++.+..||+||+ |++++++
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 161 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIART 161 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 112355555310 1122222 23344432 345788999999999 8999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++.+|+++||||||+|||+.....+.. ++..+.+ +.++|++||+.+ +..+|++++.+.+|.+...
T Consensus 162 l~~~p~llllDEP~~~LD~~~~~~l~~-~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~ 227 (251)
T PRK14270 162 IAVKPDVILMDEPTSALDPISTLKIED-LMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEF 227 (251)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEe
Confidence 999999999999999999999999988 4444555 589999999987 5778999999999988654
No 223
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.90 E-value=4.1e-23 Score=211.66 Aligned_cols=158 Identities=24% Similarity=0.307 Sum_probs=118.8
Q ss_pred eEEEeeeeeecCC------cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhh--hhhc----------------
Q 003258 326 EMTVGSLSKGISD------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLMS---------------- 378 (835)
Q Consensus 326 ~l~~~~ls~~y~~------~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli--~~ma---------------- 378 (835)
.++++||++.|++ ..+ ++||++.+| ++++|+||||+|||||||+| |+. .+..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~G-e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 81 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPG-ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR 81 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhh
Confidence 4789999999975 444 999999999 99999999999999999999 444 2210
Q ss_pred ccceeecCCCCC--CchHHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHH
Q 003258 379 KAGLYLPAKNHP--RLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS 455 (835)
Q Consensus 379 ~~G~~vP~~~~~--~i~~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~a 455 (835)
....++|+.... .+.+.+++... ....+||+||+ |++++++++.+|+++||||||+|||+.....+..
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~~i~~~--------~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~- 152 (194)
T cd03213 82 KIIGYVPQDDILHPTLTVRETLMFA--------AKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMS- 152 (194)
T ss_pred heEEEccCcccCCCCCcHHHHHHHH--------HHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-
Confidence 001233333211 12233332210 01128999999 7999999999999999999999999999999998
Q ss_pred HHHHHhcCCcEEEEEecchh--HHhhhcccccccCCceee
Q 003258 456 ILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 456 ll~~l~~~~~~viitTH~~e--l~~~~~~~~~~~n~~v~~ 493 (835)
++..+.+++.|+|++||+.+ +..+|+++..+.+|++..
T Consensus 153 ~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 153 LLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIY 192 (194)
T ss_pred HHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence 55556666899999999974 667899999999987753
No 224
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.90 E-value=2.6e-23 Score=216.84 Aligned_cols=166 Identities=16% Similarity=0.129 Sum_probs=124.7
Q ss_pred eEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cccc
Q 003258 326 EMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (835)
Q Consensus 326 ~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G 381 (835)
.++++|+++.|++ +++ ++||++.+| ++++|+||||+||||||++| |+..+. .+.-
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPG-EKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 3678999999964 234 999999999 99999999999999999999 543221 1112
Q ss_pred eeecCCCCC-CchHH--------------HHHHHHcCCcccc-----------cCCcccchHHHH-HHHHHHHHcCCCcE
Q 003258 382 LYLPAKNHP-RLPWF--------------DLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRESL 434 (835)
Q Consensus 382 ~~vP~~~~~-~i~~~--------------d~i~~~ig~~~~~-----------~~~lstfSgg~~-rl~~~~~la~~~~L 434 (835)
.|+|+.... ...+. ..++..+++.+.+ +..++.||+||+ |++++++++.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 355554310 01111 2223444444333 468899999999 79999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+||||||+|||+.....+...+ ..+.+ +.|+|++||+.+....|++.+.+.+|.+...
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l-~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~ 218 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTI-REAFK-DCTVLTIAHRLDTIIDSDRILVLDKGRVVEF 218 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHH-HHhcC-CCEEEEEeCCHHHHhhCCEEEEEECCeEEec
Confidence 9999999999999999999944 44554 5899999999886566999999999887543
No 225
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.9e-23 Score=223.24 Aligned_cols=176 Identities=19% Similarity=0.269 Sum_probs=134.4
Q ss_pred CCCCCCCCCCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------------
Q 003258 316 NPLKSDVENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------- 377 (835)
Q Consensus 316 ~~~~~~~g~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------- 377 (835)
.|..++....++.++||+++|+++.+ ++||++.+| ++++|+||||+|||||||+| |++.+.
T Consensus 11 ~~~~~~~~~~~l~i~nl~~~~~~~~il~~vs~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~ 89 (276)
T PRK14271 11 GAADVDAAAPAMAAVNLTLGFAGKTVLDQVSMGFPAR-AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRS 89 (276)
T ss_pred CCccccccCcEEEEeeEEEEECCEEEeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEE
Confidence 34444444568899999999987665 999999999 99999999999999999999 765420
Q ss_pred ----------cccceeecCCCCC-CchHHH----------------------HHHHHcCCcc----cccCCcccchHHHH
Q 003258 378 ----------SKAGLYLPAKNHP-RLPWFD----------------------LILADIGDHQ----SLEQNLSTFSGHIS 420 (835)
Q Consensus 378 ----------a~~G~~vP~~~~~-~i~~~d----------------------~i~~~ig~~~----~~~~~lstfSgg~~ 420 (835)
.....|+|+.... ....++ .++..+|+.. .+++.+.+||+||+
T Consensus 90 i~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~ 169 (276)
T PRK14271 90 IFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQ 169 (276)
T ss_pred ccccchhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHH
Confidence 0112355554310 112222 2234445432 35677899999999
Q ss_pred -HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 421 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 421 -rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|++++++++.+|+++||||||+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~ 243 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEE-FIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEE 243 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 8999999999999999999999999999999998 5555555 489999999987 5789999999999987643
No 226
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.90 E-value=1.5e-23 Score=233.55 Aligned_cols=158 Identities=16% Similarity=0.116 Sum_probs=126.3
Q ss_pred ecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----------------------cccceeecCCC
Q 003258 335 GISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGLYLPAKN 388 (835)
Q Consensus 335 ~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-----------------------a~~G~~vP~~~ 388 (835)
.|+++.+ ++||++++| ++++|+||||||||||||+| |++.+- .+...|+|+..
T Consensus 2 ~~~~~~~l~~vs~~i~~G-ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKG-EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred ccCCceeEEeeEEEEcCC-CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 3444444 999999999 99999999999999999999 555320 12234666654
Q ss_pred CC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCC
Q 003258 389 HP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (835)
Q Consensus 389 ~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~gl 444 (835)
.. .+++ +.+++..+|+....++.+++|||||+ |++++++++.+|+++||||||++|
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saL 160 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 21 1122 22446777888889999999999999 899999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
||..+..+...+.+...+.+.|+|++|||.+ ...+|+++..+.+|.+..
T Consensus 161 D~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~ 210 (363)
T TIGR01186 161 DPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ 210 (363)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe
Confidence 9999999999665543455899999999987 578999999999998754
No 227
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.7e-23 Score=218.76 Aligned_cols=168 Identities=20% Similarity=0.253 Sum_probs=129.0
Q ss_pred CCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh--hh---------------------
Q 003258 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--LM--------------------- 377 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~--~m--------------------- 377 (835)
+.|++++||++.|+++.+ ++||++.+| ++++|+|||||||||||++| |+.. +.
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 3 KKIITSSDVHLFYGKFEALKGIDLDFNQN-EITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred cceEEEEeEEEEECCeeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 458999999999987655 999999999 99999999999999999999 6542 10
Q ss_pred ---cccceeecCCCCC-CchHHHHH----------------------HHHcCC----cccccCCcccchHHHH-HHHHHH
Q 003258 378 ---SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDIL 426 (835)
Q Consensus 378 ---a~~G~~vP~~~~~-~i~~~d~i----------------------~~~ig~----~~~~~~~lstfSgg~~-rl~~~~ 426 (835)
.+.-.|+|+.... ...+.+++ +..++. .+..++.+.+||+||+ |+++++
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lar 161 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIAR 161 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHH
Confidence 0112355655311 11222222 222332 2345678899999999 899999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 427 ~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 162 VLAVKPDVILLDEPTSALDPISSTQIENML-LELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999844 44555 489999999988 5678999999999988654
No 228
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.90 E-value=4.3e-23 Score=206.33 Aligned_cols=150 Identities=19% Similarity=0.239 Sum_probs=114.2
Q ss_pred EEEeeeeeecCC-cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c-ccceeecCCCC-CCch
Q 003258 327 MTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-KAGLYLPAKNH-PRLP 393 (835)
Q Consensus 327 l~~~~ls~~y~~-~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a-~~G~~vP~~~~-~~i~ 393 (835)
++++|+++.|++ +.+ ++||++.+| ++++|+|||||||||||+++ |++.+- . +.-.|+|+... ...+
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~t 79 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPG-DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGT 79 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcccccc
Confidence 357899999953 344 999999999 99999999999999999999 444321 0 11124444431 1112
Q ss_pred HHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEec
Q 003258 394 WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH 472 (835)
Q Consensus 394 ~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH 472 (835)
..+++.. + ....||+||+ |++++++++.+|+++||||||+|+|+.....+...+.+. +.|+|++||
T Consensus 80 v~~nl~~--~-------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh 146 (166)
T cd03223 80 LREQLIY--P-------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGH 146 (166)
T ss_pred HHHHhhc--c-------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeC
Confidence 3333321 0 5789999999 899999999999999999999999999999998855443 689999999
Q ss_pred chhHHhhhcccccccCCc
Q 003258 473 YADLSCLKDKDTRFENAA 490 (835)
Q Consensus 473 ~~el~~~~~~~~~~~n~~ 490 (835)
+.++..+|++.+.+.++.
T Consensus 147 ~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 147 RPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred ChhHHhhCCEEEEEcCCC
Confidence 988777899888776653
No 229
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.7e-23 Score=218.90 Aligned_cols=165 Identities=15% Similarity=0.148 Sum_probs=122.1
Q ss_pred EEEeeeeeecC-Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------ccccee
Q 003258 327 MTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 383 (835)
Q Consensus 327 l~~~~ls~~y~-~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G~~ 383 (835)
++++|+++.|+ +..+ ++||++.+| ++++|+||||+||||||++| |+..+- .+.-.|
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAG-KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 35789999995 3434 999999999 99999999999999999999 554321 011234
Q ss_pred ecCCCC-CCchHHHHH---------------HHHcCC-----------cccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 384 LPAKNH-PRLPWFDLI---------------LADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 384 vP~~~~-~~i~~~d~i---------------~~~ig~-----------~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
+|+... ....+.+++ +...+. ...+++.+.+||+||+ |++++++++.+|+++
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 454431 011112211 111122 2223456789999999 899999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
||||||+|||+.....+.. ++..+.+ +.++|++||+.+....|++.+.+.+|.+...
T Consensus 160 llDEP~~~LD~~~~~~l~~-~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~ 216 (236)
T cd03253 160 LLDEATSALDTHTEREIQA-ALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVER 216 (236)
T ss_pred EEeCCcccCCHHHHHHHHH-HHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999998 5555666 8899999999886667999999999987643
No 230
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=1.7e-23 Score=216.66 Aligned_cols=145 Identities=21% Similarity=0.291 Sum_probs=124.7
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchH---------------------------
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW--------------------------- 394 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~--------------------------- 394 (835)
++||+|++| .+++++||||+||||+||++ .|...|.+|.+.+..
T Consensus 42 disf~IP~G-~ivgflGaNGAGKSTtLKmL--------TGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd 112 (325)
T COG4586 42 DISFEIPKG-EIVGFLGANGAGKSTTLKML--------TGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD 112 (325)
T ss_pred eeeeecCCC-cEEEEEcCCCCcchhhHHHH--------hCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeee
Confidence 999999999 99999999999999999999 776666666322210
Q ss_pred ------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhH
Q 003258 395 ------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (835)
Q Consensus 395 ------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~ 449 (835)
.+.+-+.++++..+..++..||-||| |..++++++++|.+|+|||||-|||...+
T Consensus 113 lp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq 192 (325)
T COG4586 113 LPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ 192 (325)
T ss_pred chhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHH
Confidence 11122344566778899999999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeecc
Q 003258 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (835)
Q Consensus 450 ~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~~ 495 (835)
.+|.+.+-++-.++++||+.||||+. +..+|++++.+.+|.+.||.
T Consensus 193 ~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg 239 (325)
T COG4586 193 ANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDG 239 (325)
T ss_pred HHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecc
Confidence 99999888887788999999999976 99999999999999999973
No 231
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.90 E-value=4.3e-23 Score=220.58 Aligned_cols=177 Identities=15% Similarity=0.065 Sum_probs=129.9
Q ss_pred cCCCCCCCCCCCCCeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------
Q 003258 312 SSNSNPLKSDVENSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------- 377 (835)
Q Consensus 312 ~~~~~~~~~~~g~~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------- 377 (835)
+||+...... ++++++|++++|++ ..+ ++||++.+| ++++|+||||+|||||||+| |++.+.
T Consensus 8 ~~~~~~~~~~---~~i~~~~l~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~ 83 (257)
T cd03288 8 SSNSGLVGLG---GEIKIHDLCVRYENNLKPVLKHVKAYIKPG-QKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGI 83 (257)
T ss_pred CCCcccccCC---ceEEEEEEEEEeCCCCCcceeEEEEEEcCC-CEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCE
Confidence 3555555433 68999999999976 334 999999999 99999999999999999999 554321
Q ss_pred ----------cccceeecCCCCC-CchH--------------HHHHHHHc-----------CCcccccCCcccchHHHH-
Q 003258 378 ----------SKAGLYLPAKNHP-RLPW--------------FDLILADI-----------GDHQSLEQNLSTFSGHIS- 420 (835)
Q Consensus 378 ----------a~~G~~vP~~~~~-~i~~--------------~d~i~~~i-----------g~~~~~~~~lstfSgg~~- 420 (835)
.+.-.|+|+.... ...+ +..++... |++..+.....+||+||+
T Consensus 84 ~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~q 163 (257)
T cd03288 84 DISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQ 163 (257)
T ss_pred EhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHH
Confidence 1112345554310 0000 11112222 233334456679999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 421 rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
|++++++++.+|+++||||||+|+|+.....+...+ ..+.+ +.|+|++||+.+....|++++.+.+|.+..+
T Consensus 164 rl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l-~~~~~-~~tiii~sh~~~~~~~~dri~~l~~G~i~~~ 235 (257)
T cd03288 164 LFCLARAFVRKSSILIMDEATASIDMATENILQKVV-MTAFA-DRTVVTIAHRVSTILDADLVLVLSRGILVEC 235 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHhcC-CCEEEEEecChHHHHhCCEEEEEECCEEEEe
Confidence 899999999999999999999999999998888844 44544 7899999999886666999999999988644
No 232
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=5.4e-23 Score=210.33 Aligned_cols=158 Identities=20% Similarity=0.200 Sum_probs=119.8
Q ss_pred eEEEeeeeeecCC----cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhccc-----------------c
Q 003258 326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKA-----------------G 381 (835)
Q Consensus 326 ~l~~~~ls~~y~~----~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma~~-----------------G 381 (835)
+++++|+++.|++ +.+ ++||++.+| ++++|+||||+|||||||+| |+..+-... -
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i 81 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPG-TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRST 81 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhce
Confidence 6789999999974 444 999999999 99999999999999999999 442110001 1
Q ss_pred eeecCCCC--CCchHHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHH
Q 003258 382 LYLPAKNH--PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458 (835)
Q Consensus 382 ~~vP~~~~--~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~ 458 (835)
.|+|+... ..+++.+++.... ....|||||+ |++++++++.+|+++||||||+|+|+.....+.. ++.
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~--------~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~-~l~ 152 (192)
T cd03232 82 GYVEQQDVHSPNLTVREALRFSA--------LLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVR-FLK 152 (192)
T ss_pred EEecccCccccCCcHHHHHHHHH--------HHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHH-HHH
Confidence 23444321 1123344432100 0118999999 8999999999999999999999999999999999 555
Q ss_pred HHhcCCcEEEEEecchh--HHhhhcccccccC-Cceee
Q 003258 459 YLRDRVGLAVVTTHYAD--LSCLKDKDTRFEN-AATEF 493 (835)
Q Consensus 459 ~l~~~~~~viitTH~~e--l~~~~~~~~~~~n-~~v~~ 493 (835)
.+.+.+.|+|++||+.+ +..+|++++.+.+ |.+.+
T Consensus 153 ~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~ 190 (192)
T cd03232 153 KLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVY 190 (192)
T ss_pred HHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEe
Confidence 56666899999999986 4788999999988 87764
No 233
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.9e-23 Score=219.94 Aligned_cols=167 Identities=17% Similarity=0.205 Sum_probs=129.0
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh--h----h------------------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L----M------------------ 377 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~--~----m------------------ 377 (835)
.|++++||++.|+++.+ ++||++.+| ++++|+|||||||||||++| |+.. + -
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPN-EITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 47899999999987655 999999999 99999999999999999999 6532 1 0
Q ss_pred --cccceeecCCCCC-CchHHHHH----------------------HHHcCCc----ccccCCcccchHHHH-HHHHHHH
Q 003258 378 --SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (835)
Q Consensus 378 --a~~G~~vP~~~~~-~i~~~d~i----------------------~~~ig~~----~~~~~~lstfSgg~~-rl~~~~~ 427 (835)
.+...|+|+.... ..++.+++ +..++.. +..++.+.+||+||+ |++++++
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARV 162 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 0112355655311 12233332 2233321 235678899999999 8999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14239 163 LATSPKIILLDEPTSALDPISAGKIEE-TLLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEY 228 (252)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHH-HHHHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999998 4455554 589999999987 6789999999999988654
No 234
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.3e-23 Score=221.47 Aligned_cols=166 Identities=19% Similarity=0.256 Sum_probs=127.0
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh------hc------------------
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------MS------------------ 378 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------ma------------------ 378 (835)
+++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+ -+
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPR-SVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 6889999999987655 999999999 99999999999999999999 66531 00
Q ss_pred --ccceeecCCCCC--CchHHH----------------------HHHHHcCC----cccccCCcccchHHHH-HHHHHHH
Q 003258 379 --KAGLYLPAKNHP--RLPWFD----------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDILE 427 (835)
Q Consensus 379 --~~G~~vP~~~~~--~i~~~d----------------------~i~~~ig~----~~~~~~~lstfSgg~~-rl~~~~~ 427 (835)
+...++|+.... .+++++ +++..+|+ .+..++.+.+|||||+ |++++++
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARA 162 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 112244444211 112222 22334454 2456788899999999 8999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccccc------CCceeec
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE------NAATEFS 494 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~------n~~v~~~ 494 (835)
++.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+. +|.+...
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 163 IAVEPDVLLMDEPCSALDPISTLAIED-LINELKQ-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 999999999999999999999999988 4445554 589999999987 567999998886 5766543
No 235
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.3e-23 Score=244.66 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=126.9
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------cccceeecCCCCC--C
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------SKAGLYLPAKNHP--R 391 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m---------a~~G~~vP~~~~~--~ 391 (835)
||+++|+++.|+++++ ++||++.+| ++++|+||||||||||||+| |++.+- ... .|+|+.... .
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i-~~~~q~~~~~~~ 78 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGG-NRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERL-GKLRQDQFAFEE 78 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEE-EEEeccCCcCCC
Confidence 5789999999987665 999999999 99999999999999999999 655321 112 245554211 0
Q ss_pred chH-----------------------------------------------------HHHHHHHcCCcccc-cCCcccchH
Q 003258 392 LPW-----------------------------------------------------FDLILADIGDHQSL-EQNLSTFSG 417 (835)
Q Consensus 392 i~~-----------------------------------------------------~d~i~~~ig~~~~~-~~~lstfSg 417 (835)
+++ +..++..+|+.+.. ++.+++|||
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 158 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAP 158 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCH
Confidence 111 12345556665433 467899999
Q ss_pred HHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCcee
Q 003258 418 HIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (835)
Q Consensus 418 g~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~ 492 (835)
||+ |+++|++++.+|++|||||||+|||+.....|...+. +.+.|||++|||.+ +..+|++++.+.+|.+.
T Consensus 159 Gq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~ 231 (530)
T PRK15064 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN----ERNSTMIIISHDRHFLNSVCTHMADLDYGELR 231 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH----hCCCeEEEEeCCHHHHHhhcceEEEEeCCEEE
Confidence 999 8999999999999999999999999999998887443 34889999999987 67899999999998874
No 236
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.8e-23 Score=222.25 Aligned_cols=168 Identities=17% Similarity=0.215 Sum_probs=131.0
Q ss_pred CCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-----h------------------
Q 003258 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M------------------ 377 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-----m------------------ 377 (835)
..++.++||+++|+++.+ ++||++.+| ++++|+||||||||||||+| |+..+ -
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDMQFEKN-KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 457889999999987665 999999999 99999999999999999999 66531 0
Q ss_pred ---cccceeecCCCCC-CchHHHH----------------------HHHHcCCc----ccccCCcccchHHHH-HHHHHH
Q 003258 378 ---SKAGLYLPAKNHP-RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDIL 426 (835)
Q Consensus 378 ---a~~G~~vP~~~~~-~i~~~d~----------------------i~~~ig~~----~~~~~~lstfSgg~~-rl~~~~ 426 (835)
.+...|+|+.... ..++.++ ++..+++. +.+++.+.+||+||+ |+++++
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~lar 176 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIAR 176 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHH
Confidence 1112456665311 1122222 23344442 346788999999999 899999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 427 ~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++.+|+++||||||+|||+.....+.. ++..+.+ +.++|++||+.+ +..+|+++..+.+|++...
T Consensus 177 al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 177 AIAVKPDILLMDEPASALDPISTMQLEE-TMFELKK-NYTIIIVTHNMQQAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhc-CCEEEEEecCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999998 4455554 689999999987 5689999999999988644
No 237
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.89 E-value=2.2e-23 Score=244.34 Aligned_cols=166 Identities=20% Similarity=0.219 Sum_probs=131.4
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhh--hhh-c----------------------
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM-S---------------------- 378 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli--~~m-a---------------------- 378 (835)
|+++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++ .+- +
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEG-EVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 468899999987655 999999999 99999999999999999999 774 110 0
Q ss_pred -----------------------------ccceeecCCC-C--CCchH---------------------HHHHHHHcCCc
Q 003258 379 -----------------------------KAGLYLPAKN-H--PRLPW---------------------FDLILADIGDH 405 (835)
Q Consensus 379 -----------------------------~~G~~vP~~~-~--~~i~~---------------------~d~i~~~ig~~ 405 (835)
+.-.++|+.. . ..+.. +..++..+|+.
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 0013555541 1 11111 22346677887
Q ss_pred ccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccc
Q 003258 406 QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKD 483 (835)
Q Consensus 406 ~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~ 483 (835)
+..++.+++|||||+ |+++|++++.+|+++||||||+|||+.....+...+.+...+.|.|||++|||.+ +..+|+++
T Consensus 160 ~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i 239 (520)
T TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA 239 (520)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 778899999999999 8999999999999999999999999999999999444443556899999999988 56799999
Q ss_pred ccccCCceee
Q 003258 484 TRFENAATEF 493 (835)
Q Consensus 484 ~~~~n~~v~~ 493 (835)
+.+.+|.+..
T Consensus 240 ~~l~~G~i~~ 249 (520)
T TIGR03269 240 IWLENGEIKE 249 (520)
T ss_pred EEEeCCEEee
Confidence 9999987754
No 238
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.7e-23 Score=219.91 Aligned_cols=166 Identities=17% Similarity=0.165 Sum_probs=128.9
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-----h--------------------
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M-------------------- 377 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-----m-------------------- 377 (835)
|++++|+++.|++..+ ++||++.+| ++++|+||||+||||||++| |+..+ .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKN-QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCC-CEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 7899999999987665 999999999 99999999999999999999 66431 0
Q ss_pred -cccceeecCCCC-CCchHHHH----------------------HHHHcCCcc----cccCCcccchHHHH-HHHHHHHH
Q 003258 378 -SKAGLYLPAKNH-PRLPWFDL----------------------ILADIGDHQ----SLEQNLSTFSGHIS-RIVDILEL 428 (835)
Q Consensus 378 -a~~G~~vP~~~~-~~i~~~d~----------------------i~~~ig~~~----~~~~~lstfSgg~~-rl~~~~~l 428 (835)
.+...|+|+... ...+..++ .+..+|..+ ..++.+.+||+||+ |+++++++
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al 161 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL 161 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence 111234555431 01122222 123334432 35778899999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 429 a~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+.+|+++||||||+|||+.....+...+.+ +.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~-~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14262 162 AVEPEVILLDEPTSALDPIATQRIEKLLEE-LSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEY 226 (250)
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHH-Hhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999885544 555 689999999987 6789999999999988654
No 239
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.6e-23 Score=208.29 Aligned_cols=167 Identities=20% Similarity=0.230 Sum_probs=133.3
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hccccee
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLY 383 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~~G~~ 383 (835)
||+++||+++..++.+ +++|++.+| ++++|+||||+|||||||.+ |-+.+ ||+.-..
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pG-ev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPG-EVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCC-cEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 6889999999987776 999999999 99999999999999999999 22211 2222223
Q ss_pred ecCCCCCCchH-------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcC------C
Q 003258 384 LPAKNHPRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS------R 431 (835)
Q Consensus 384 vP~~~~~~i~~-------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~------~ 431 (835)
.|+.....|+| .+++++..+......+..-+||||++ |+.+++.+++ .
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~ 159 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPS 159 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCC
Confidence 33332222221 34567777888888899999999998 8888876653 3
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccccCCceeec
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~-~~~~~~~~~~n~~v~~~ 494 (835)
+..++|||||+.||+.....+.. +...|...|+.|+++-||.++. .|||+++.+.+|++...
T Consensus 160 ~r~L~LDEPtsaLDi~HQ~~tl~-laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~ 222 (259)
T COG4559 160 GRWLFLDEPTSALDIAHQHHTLR-LARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIAS 222 (259)
T ss_pred CceEEecCCccccchHHHHHHHH-HHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeec
Confidence 34999999999999999999999 7777888889999999999965 59999999999998754
No 240
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=6.5e-23 Score=226.89 Aligned_cols=167 Identities=13% Similarity=0.142 Sum_probs=131.4
Q ss_pred eEEEeeeeeecC----Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh---------------h------
Q 003258 326 EMTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------M------ 377 (835)
Q Consensus 326 ~l~~~~ls~~y~----~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~---------------m------ 377 (835)
+|+++||++.|+ ...+ ++||+|.+| ++++|+|+||||||||+++| |+... +
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~G-e~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEG-EIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCC-CEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 688999999993 3333 999999999 99999999999999999999 77531 0
Q ss_pred ------cccceeecCCCCCC----chH---------------------------HHHHHHHcCCcc---cccCCcccchH
Q 003258 378 ------SKAGLYLPAKNHPR----LPW---------------------------FDLILADIGDHQ---SLEQNLSTFSG 417 (835)
Q Consensus 378 ------a~~G~~vP~~~~~~----i~~---------------------------~d~i~~~ig~~~---~~~~~lstfSg 417 (835)
.+.-.++|++.... +.+ +.+++..+|+.+ ..++.++.|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 01124677764211 111 123455667753 35788999999
Q ss_pred HHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 418 HIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 418 g~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||+ |++++++++.+|+|||+||||+|||+..+..+.. ++..+.+ .|.|+|++|||++ +..+|+++..+.+|.+...
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFR-LLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 999 8999999999999999999999999999999999 5555655 5899999999988 4579999999999988643
No 241
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.5e-23 Score=219.46 Aligned_cols=166 Identities=18% Similarity=0.262 Sum_probs=128.2
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------c------------------
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S------------------ 378 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------a------------------ 378 (835)
|+.++|+++.|+++.+ ++||++.+| ++++|+||||+|||||||+| |+..+- +
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRG-TVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 6889999999987665 999999999 99999999999999999999 664321 0
Q ss_pred --ccceeecCCCCC--CchHHHHHH----------------------HHcCC----cccccCCcccchHHHH-HHHHHHH
Q 003258 379 --KAGLYLPAKNHP--RLPWFDLIL----------------------ADIGD----HQSLEQNLSTFSGHIS-RIVDILE 427 (835)
Q Consensus 379 --~~G~~vP~~~~~--~i~~~d~i~----------------------~~ig~----~~~~~~~lstfSgg~~-rl~~~~~ 427 (835)
+...|+|+.... .+++.+++. ..++. .+..++.+++|||||+ |++++++
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARA 162 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 012255554311 122333321 12222 1234678899999999 8999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++.+|+++||||||+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 163 l~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 163 LAVEPEILLMDEPTSALDPASTARIED-LMTDLKK-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999 5555654 689999999987 5668999999999988654
No 242
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.5e-23 Score=244.38 Aligned_cols=164 Identities=18% Similarity=0.251 Sum_probs=131.3
Q ss_pred CCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c-ccceeecCCCC---
Q 003258 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-KAGLYLPAKNH--- 389 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a-~~G~~vP~~~~--- 389 (835)
+.|++++||++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+..+. . ..-.|+|+...
T Consensus 317 ~~~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~ 395 (530)
T PRK15064 317 RNALEVENLTKGFDNGPLFKNLNLLLEAG-ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDF 395 (530)
T ss_pred CceEEEEeeEEeeCCceeecCcEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccC
Confidence 458999999999987655 999999999 99999999999999999999 665321 1 11135666531
Q ss_pred -CCchH----------------HHHHHHHcCCc-ccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHH
Q 003258 390 -PRLPW----------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 450 (835)
Q Consensus 390 -~~i~~----------------~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~ 450 (835)
..+++ +..++..+|+. +..++++++|||||+ |++++++++.+|+++||||||+|||+....
T Consensus 396 ~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 475 (530)
T PRK15064 396 ENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIE 475 (530)
T ss_pred CCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 01222 22345667773 567899999999999 899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCcee
Q 003258 451 ALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (835)
Q Consensus 451 aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~ 492 (835)
.+...+.++ ++|+|++|||.+ +..+|++++.+.+|.+.
T Consensus 476 ~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 476 SLNMALEKY----EGTLIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred HHHHHHHHC----CCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 998854443 569999999987 56789999999998876
No 243
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.89 E-value=2e-23 Score=203.94 Aligned_cols=140 Identities=20% Similarity=0.213 Sum_probs=113.4
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCC
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGD 404 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~ 404 (835)
++++|+++.|++..+ ++||++.+| ++++|+||||+|||||++++ +|...|.+|...+...
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~~G~i~~~~~--------- 62 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPG-DRIGLVGRNGAGKSTLLKLI--------AGELEPDEGIVTWGST--------- 62 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCC-CEEEEECCCCCCHHHHHHHH--------cCCCCCCceEEEECCe---------
Confidence 357899999987555 999999999 99999999999999999999 8888887774333210
Q ss_pred cccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcc
Q 003258 405 HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDK 482 (835)
Q Consensus 405 ~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~ 482 (835)
..-..+..||+||+ |++++++++.+|+++|||||++|+|+.....+...+ ..+ +.|+|++||+.+ +..+|++
T Consensus 63 --~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l-~~~---~~til~~th~~~~~~~~~d~ 136 (144)
T cd03221 63 --VKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL-KEY---PGTVILVSHDRYFLDQVATK 136 (144)
T ss_pred --EEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHc---CCEEEEEECCHHHHHHhCCE
Confidence 00111223999999 899999999999999999999999999999998844 433 579999999987 5578899
Q ss_pred cccccCCc
Q 003258 483 DTRFENAA 490 (835)
Q Consensus 483 ~~~~~n~~ 490 (835)
.+.+.+|+
T Consensus 137 v~~l~~g~ 144 (144)
T cd03221 137 IIELEDGK 144 (144)
T ss_pred EEEEeCCC
Confidence 88887763
No 244
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.9e-23 Score=219.91 Aligned_cols=166 Identities=19% Similarity=0.269 Sum_probs=128.1
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh------hc------------------
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------MS------------------ 378 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------ma------------------ 378 (835)
+++++|+++.|++..+ ++||++.+| ++++|+||||+|||||||+| |++.. -+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEK-ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 6889999999987655 899999999 99999999999999999999 66531 00
Q ss_pred --ccceeecCCCCC-CchHHH----------------------HHHHHcCCc----ccccCCcccchHHHH-HHHHHHHH
Q 003258 379 --KAGLYLPAKNHP-RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (835)
Q Consensus 379 --~~G~~vP~~~~~-~i~~~d----------------------~i~~~ig~~----~~~~~~lstfSgg~~-rl~~~~~l 428 (835)
+...++|+.... ..++.+ .++..+++. ...++.+.+|||||+ |+++++++
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral 162 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARAL 162 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHH
Confidence 011244444210 112222 223344542 345788999999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 429 a~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14251 163 AVRPKVVLLDEPTSALDPISSSEIEETLM-ELKH-QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA 227 (251)
T ss_pred hcCCCEEEecCCCccCCHHHHHHHHHHHH-HHHc-CCeEEEEECCHHHHHhhcCEEEEEECCEEEEe
Confidence 99999999999999999999999988554 4554 689999999987 5778999999999988643
No 245
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=5e-23 Score=219.13 Aligned_cols=167 Identities=17% Similarity=0.205 Sum_probs=128.5
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------c-----------------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S----------------- 378 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------a----------------- 378 (835)
++++++||++.|+++.+ ++||++.+| ++++|+|||||||||||++| |++.+- +
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPER-QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 47889999999987655 999999999 99999999999999999999 665431 0
Q ss_pred ---ccceeecCCCCC-CchHHHH----------------------HHHHcCCc----ccccCCcccchHHHH-HHHHHHH
Q 003258 379 ---KAGLYLPAKNHP-RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (835)
Q Consensus 379 ---~~G~~vP~~~~~-~i~~~d~----------------------i~~~ig~~----~~~~~~lstfSgg~~-rl~~~~~ 427 (835)
+.-.|+|+.... ...+.++ ++..+++. +..++.+.+||+||+ |++++++
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara 161 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARV 161 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 112345554310 0111121 12233432 345788999999999 8999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++.+|+++||||||+|||+.....+.. ++..+. .+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 162 l~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14249 162 LAIEPEVILMDEPCSALDPVSTMRIEE-LMQELK-QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEY 227 (251)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEe
Confidence 999999999999999999999999998 555555 4789999999987 5678999999999987643
No 246
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=6.4e-23 Score=221.34 Aligned_cols=164 Identities=18% Similarity=0.291 Sum_probs=126.1
Q ss_pred CCCCCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------c-------------
Q 003258 321 DVENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S------------- 378 (835)
Q Consensus 321 ~~g~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------a------------- 378 (835)
..+..||+++||++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+..+. +
T Consensus 15 ~~~~~~l~~~nl~~~~~~~~~l~~vs~~i~~G-e~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 15 NPDHSVFEVEGVKVFYGGFLALVDVHLKIPAK-KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred CCCCceEEEeeEEEEeCCeEEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 345569999999999987655 999999999 99999999999999999999 664210 0
Q ss_pred -------ccceeecCCCCC-CchHHHHH--------------------HHHcCC----cccccCCcccchHHHH-HHHHH
Q 003258 379 -------KAGLYLPAKNHP-RLPWFDLI--------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDI 425 (835)
Q Consensus 379 -------~~G~~vP~~~~~-~i~~~d~i--------------------~~~ig~----~~~~~~~lstfSgg~~-rl~~~ 425 (835)
..-.|+|+.... ...+++++ +..++. .+..++++++|||||+ |++++
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 173 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA 173 (274)
T ss_pred chhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence 111355655311 01222222 223333 2345788899999999 89999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccccc
Q 003258 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE 487 (835)
Q Consensus 426 ~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~ 487 (835)
++++.+|++|||||||+|||+.....+...+.+ +.+ +.++|++||+.+ +..+|++.+.+.
T Consensus 174 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~-~~~-~~tiii~sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 174 RAIAMKPDVLLMDEPCSALDPISTRQVEELCLE-LKE-QYTIIMVTHNMQQASRVADWTAFFN 234 (274)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHH-Hhc-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 999999999999999999999999999995554 554 689999999987 667999999887
No 247
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.89 E-value=2.8e-23 Score=218.45 Aligned_cols=152 Identities=18% Similarity=0.219 Sum_probs=119.2
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------cc-------cceeecCCCCC--CchHH---------
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SK-------AGLYLPAKNHP--RLPWF--------- 395 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a~-------~G~~vP~~~~~--~i~~~--------- 395 (835)
++||++.+| ++++|+||||||||||+|+| |++.+- .+ ...++|+.... .++..
T Consensus 3 ~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~ 81 (230)
T TIGR01184 3 GVNLTIQQG-EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR 81 (230)
T ss_pred ceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence 578999999 99999999999999999999 554321 00 01355554311 11221
Q ss_pred --------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHH
Q 003258 396 --------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460 (835)
Q Consensus 396 --------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l 460 (835)
..++..+|+.+..++.+++|||||+ |+.++++++.+|+++||||||+|||+.....+...+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 161 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW 161 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 2335556777778899999999999 8999999999999999999999999999999999555544
Q ss_pred hcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 461 RDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 461 ~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
.+.+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 162 ~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~ 196 (230)
T TIGR01184 162 EEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANI 196 (230)
T ss_pred HhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecc
Confidence 445889999999987 5789999999999988644
No 248
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.89 E-value=2.7e-23 Score=248.73 Aligned_cols=162 Identities=20% Similarity=0.195 Sum_probs=122.6
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------ccc-ceeecCCCCC-C-c
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKA-GLYLPAKNHP-R-L 392 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a~~-G~~vP~~~~~-~-i 392 (835)
||.++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- ... -.++|+.... . .
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~G-e~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~ 81 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDN-ERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEG 81 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCC
Confidence 6899999999988766 999999999 99999999999999999999 554321 000 0122221100 0 0
Q ss_pred hH-------------------------------------------------------HHHHHHHcCCcccccCCcccchH
Q 003258 393 PW-------------------------------------------------------FDLILADIGDHQSLEQNLSTFSG 417 (835)
Q Consensus 393 ~~-------------------------------------------------------~d~i~~~ig~~~~~~~~lstfSg 417 (835)
.+ +..++..+|+. .++.+++|||
T Consensus 82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSg 159 (635)
T PRK11147 82 TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSG 159 (635)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCH
Confidence 00 11123334443 3788999999
Q ss_pred HHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 418 HIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 418 g~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||+ |++++++++.+|+||||||||+|||+.....|...+.++ +++||++|||.+ +..+|++++.+.+|.+..+
T Consensus 160 GekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~ 234 (635)
T PRK11147 160 GWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDRSFIRNMATRIVDLDRGKLVSY 234 (635)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEe
Confidence 999 899999999999999999999999999998887744333 469999999987 6679999999999887643
No 249
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.9e-23 Score=221.61 Aligned_cols=164 Identities=16% Similarity=0.254 Sum_probs=126.2
Q ss_pred CCCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-----h-----------------
Q 003258 323 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M----------------- 377 (835)
Q Consensus 323 g~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-----m----------------- 377 (835)
+..|++++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |++.+ .
T Consensus 10 ~~~~l~i~nl~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 10 KNIIISLQNVTISYGTFEAVKNVFCDIPRG-KVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CCceEEEEeEEEEECCEEEEcceEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 4568999999999987655 999999999 99999999999999999999 66431 0
Q ss_pred ----cccceeecCCCCC-CchHHH--------------------HHHHHcCC----cccccCCcccchHHHH-HHHHHHH
Q 003258 378 ----SKAGLYLPAKNHP-RLPWFD--------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDILE 427 (835)
Q Consensus 378 ----a~~G~~vP~~~~~-~i~~~d--------------------~i~~~ig~----~~~~~~~lstfSgg~~-rl~~~~~ 427 (835)
.+.-.|+|+.... ..++.+ +++..++. .+..++.+.+||+||+ |++++++
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~lara 168 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIART 168 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHH
Confidence 0112355655310 001111 12333433 2346778899999999 8999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCC
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA 489 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~ 489 (835)
++.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.++
T Consensus 169 l~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~~ 229 (269)
T PRK14259 169 IAIEPEVILMDEPCSALDPISTLKIEE-TMHELKK-NFTIVIVTHNMQQAVRVSDMTAFFNAE 229 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEecc
Confidence 999999999999999999999999998 4455554 689999999987 67899999888863
No 250
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=5.5e-23 Score=223.05 Aligned_cols=169 Identities=17% Similarity=0.220 Sum_probs=129.0
Q ss_pred CCCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh----------------h------
Q 003258 323 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M------ 377 (835)
Q Consensus 323 g~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~----------------m------ 377 (835)
|..+++++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+ +
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPEN-QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 4568999999999987655 999999999 99999999999999999999 66531 0
Q ss_pred ----cccceeecCCCCC-CchHHH--------------------HHHHHcCCc----ccccCCcccchHHHH-HHHHHHH
Q 003258 378 ----SKAGLYLPAKNHP-RLPWFD--------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (835)
Q Consensus 378 ----a~~G~~vP~~~~~-~i~~~d--------------------~i~~~ig~~----~~~~~~lstfSgg~~-rl~~~~~ 427 (835)
.+.-.|+|+.... ...+.+ .++..+|+. +.+++.+++|||||+ |++++++
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAra 194 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARA 194 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHH
Confidence 0112355555310 012222 233445543 346788999999999 8999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccc-cccCCceeec
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDT-RFENAATEFS 494 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~-~~~n~~v~~~ 494 (835)
++.+|++|||||||+|||+.....+.. ++..+.+ +.++|++||+.+ +..+|++.+ .+.+|++..+
T Consensus 195 L~~~p~lLLLDEPts~LD~~~~~~l~~-~L~~~~~-~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 195 IAPDPEVILMDEPASALDPVATSKIED-LIEELAE-EYTVVIVTHNMQQAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred HHcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHhc-CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEe
Confidence 999999999999999999999999998 4445555 379999999987 467899865 4588887643
No 251
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.89 E-value=4.3e-23 Score=216.21 Aligned_cols=166 Identities=20% Similarity=0.276 Sum_probs=128.6
Q ss_pred eEEEeeeeeecCCc----ee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh---hhc----------------c
Q 003258 326 EMTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---LMS----------------K 379 (835)
Q Consensus 326 ~l~~~~ls~~y~~~----~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~---~ma----------------~ 379 (835)
.+.++|+++.|.+. .+ ++||++.+| ++++|+||||||||||||+| |+.. +.. +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESG-QVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCC-eEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcc
Confidence 35678999999653 34 899999999 99999999999999999999 6655 211 1
Q ss_pred cceeecCCCCC--CchHHHH-------------------------HHHHcCCcccccCCcccchHHHH-HHHHHHHHcCC
Q 003258 380 AGLYLPAKNHP--RLPWFDL-------------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 380 ~G~~vP~~~~~--~i~~~d~-------------------------i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~ 431 (835)
...++|+.... .+++.++ ++..+++....++.++.||+||+ |++++++++.+
T Consensus 82 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 161 (226)
T cd03234 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD 161 (226)
T ss_pred cEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhC
Confidence 12355554311 1122211 34444555566788999999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecch--hHHhhhcccccccCCceee
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA--DLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~--el~~~~~~~~~~~n~~v~~ 493 (835)
|+++||||||+|||+.....+...+ ..+.+.+.|+|++||+. ++..+|++++.+.+|++..
T Consensus 162 p~illlDEP~~gLD~~~~~~~~~~l-~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 162 PKVLILDEPTSGLDSFTALNLVSTL-SQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHH-HHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 9999999999999999999999944 44555688999999996 5888999999999988754
No 252
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.9e-23 Score=221.85 Aligned_cols=170 Identities=20% Similarity=0.224 Sum_probs=130.2
Q ss_pred CCCCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh-----hh-c--------------
Q 003258 322 VENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-----LM-S-------------- 378 (835)
Q Consensus 322 ~g~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~-----~m-a-------------- 378 (835)
.+..|++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++. .- +
T Consensus 20 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 20 PKKVVFDTQNLNLWYGEDHALKNINLDIHEN-EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred CCceEEEEeeeEEEECCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 35568999999999987555 999999999 99999999999999999999 7653 10 0
Q ss_pred ------ccceeecCCCCC-CchHHHHHH----------------------HHcC----CcccccCCcccchHHHH-HHHH
Q 003258 379 ------KAGLYLPAKNHP-RLPWFDLIL----------------------ADIG----DHQSLEQNLSTFSGHIS-RIVD 424 (835)
Q Consensus 379 ------~~G~~vP~~~~~-~i~~~d~i~----------------------~~ig----~~~~~~~~lstfSgg~~-rl~~ 424 (835)
+.-.|+|+.... ..++.+++. ..++ ..+.+++++..|||||+ |+++
T Consensus 99 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~l 178 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCI 178 (271)
T ss_pred cHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHH
Confidence 112355555311 012223221 1121 22335678899999999 8999
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 425 ~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++++.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 179 araL~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 179 ARCLAIEPDVILMDEPTSALDPISTLKVEE-LVQELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEY 247 (271)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999 4455555 689999999987 5679999999999988654
No 253
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.4e-23 Score=241.10 Aligned_cols=163 Identities=18% Similarity=0.172 Sum_probs=130.9
Q ss_pred EeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc-------------ccceeec
Q 003258 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS-------------KAGLYLP 385 (835)
Q Consensus 329 ~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma-------------~~G~~vP 385 (835)
++|++++|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+ .. +.-.|+|
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~G-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPH-SIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 3689999987655 999999999 99999999999999999999 66532 11 1123566
Q ss_pred CCCCC--CchH------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEe
Q 003258 386 AKNHP--RLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (835)
Q Consensus 386 ~~~~~--~i~~------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLD 438 (835)
+.... .+++ +.+++..+|+....++.+++|||||+ |+++|++++.+|+++|||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD 159 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 65310 1111 23446667777778899999999999 899999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 439 Ep~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
|||+|||+.....|.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|.+..
T Consensus 160 EPt~~LD~~~~~~l~~-~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~ 214 (491)
T PRK10982 160 EPTSSLTEKEVNHLFT-IIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIA 214 (491)
T ss_pred CCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999 55566767899999999987 667999999999998754
No 254
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.7e-23 Score=218.70 Aligned_cols=168 Identities=23% Similarity=0.259 Sum_probs=130.4
Q ss_pred CCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhc----------------------
Q 003258 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS---------------------- 378 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma---------------------- 378 (835)
.+++.++|++++|+++.+ ++||++.+| ++++|+||||+||||||++| |+..+-.
T Consensus 8 ~~~i~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 8 EDVFNISRLYLYINDKAILKDITIKIPNN-SIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hhheeeeeEEEecCCceeEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 358899999999998776 999999999 99999999999999999999 5543210
Q ss_pred ---ccceeecCCCCC--CchHHH----------------------HHHHHcCCc----ccccCCcccchHHHH-HHHHHH
Q 003258 379 ---KAGLYLPAKNHP--RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDIL 426 (835)
Q Consensus 379 ---~~G~~vP~~~~~--~i~~~d----------------------~i~~~ig~~----~~~~~~lstfSgg~~-rl~~~~ 426 (835)
+...|+|+.... .+++.+ .++..+|+. +..++.+..||+||+ |+++++
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 166 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIAR 166 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHH
Confidence 112355554311 112222 223445553 245678899999999 899999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 427 ~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++.+|+++||||||+|||+.....+...+ ..+.+ ++|+|++||+.+ +..+|++.+.+.+|.+...
T Consensus 167 al~~~P~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~ 233 (257)
T PRK14246 167 ALALKPKVLLMDEPTSMIDIVNSQAIEKLI-TELKN-EIAIVIVSHNPQQVARVADYVAFLYNGELVEW 233 (257)
T ss_pred HHHcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999944 55554 689999999988 4579999999999887654
No 255
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.89 E-value=6.5e-23 Score=210.74 Aligned_cols=161 Identities=17% Similarity=0.213 Sum_probs=128.0
Q ss_pred CCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC------------
Q 003258 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------------ 389 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~------------ 389 (835)
..+|+++||+..|+++.+ ++|.++++| +.++|+|||||||||||+++ +|.+.|.++.
T Consensus 29 ~~li~l~~v~v~r~gk~iL~~isW~V~~g-e~W~I~G~NGsGKTTLL~ll--------~~~~~pssg~~~~~G~~~G~~~ 99 (257)
T COG1119 29 EPLIELKNVSVRRNGKKILGDLSWQVNPG-EHWAIVGPNGAGKTTLLSLL--------TGEHPPSSGDVTLLGRRFGKGE 99 (257)
T ss_pred cceEEecceEEEECCEeeccccceeecCC-CcEEEECCCCCCHHHHHHHH--------hcccCCCCCceeeeeeeccCCc
Confidence 356999999999999988 999999999 99999999999999999999 4433333220
Q ss_pred -----------------------------------CCchH------------HHHHHHHcCCcccccCCcccchHHHH-H
Q 003258 390 -----------------------------------PRLPW------------FDLILADIGDHQSLEQNLSTFSGHIS-R 421 (835)
Q Consensus 390 -----------------------------------~~i~~------------~d~i~~~ig~~~~~~~~lstfSgg~~-r 421 (835)
..+++ ...++..+|.....+++..+||-||+ |
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rr 179 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRR 179 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHH
Confidence 01111 23457788888899999999999999 5
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcC--CcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR--VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 422 l~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~--~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+-++++++.+|.|||||||++|+|...+..+...+ ..+... +.++|++||+.+ +-...++...+.+|.+...
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l-~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~ 254 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRL-EELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQ 254 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHH-HHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeec
Confidence 66669999999999999999999999999999844 445443 568999999976 5555666777777776543
No 256
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.89 E-value=4e-23 Score=241.05 Aligned_cols=168 Identities=13% Similarity=0.129 Sum_probs=133.5
Q ss_pred CeEEEeeeeeecC---Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-h-------c------------
Q 003258 325 SEMTVGSLSKGIS---DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-M-------S------------ 378 (835)
Q Consensus 325 ~~l~~~~ls~~y~---~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-m-------a------------ 378 (835)
.|++++|+++.|+ +..+ ++||++.+| ++++|+||||||||||||+| |++.+ . .
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~ 334 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRG-EILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAI 334 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCC-cEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 4788999999993 3334 999999999 99999999999999999999 66542 0 0
Q ss_pred -ccceeecCCCC-----C--------Cch------------------HHHHHHHHcCCcc-cccCCcccchHHHH-HHHH
Q 003258 379 -KAGLYLPAKNH-----P--------RLP------------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVD 424 (835)
Q Consensus 379 -~~G~~vP~~~~-----~--------~i~------------------~~d~i~~~ig~~~-~~~~~lstfSgg~~-rl~~ 424 (835)
+.-.|+|+... . .++ .+.+++..+++.+ ..++.+.+|||||+ |+++
T Consensus 335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l 414 (500)
T TIGR02633 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVL 414 (500)
T ss_pred hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHH
Confidence 01135555420 0 000 1234567778864 57899999999999 8999
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 425 ~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|++++.+|+++||||||+|||+.....+.. ++..+.+.|.|+|++|||.+ +..+|++++.+.+|.+.++
T Consensus 415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 484 (500)
T TIGR02633 415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYK-LINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGD 484 (500)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999998 56667777899999999987 6789999999999987654
No 257
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.89 E-value=6.1e-23 Score=220.18 Aligned_cols=150 Identities=15% Similarity=0.129 Sum_probs=115.5
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhcc----cc--eeecCCC--CCCchHHH----------------
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK----AG--LYLPAKN--HPRLPWFD---------------- 396 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma~----~G--~~vP~~~--~~~i~~~d---------------- 396 (835)
++||++.+| ++++|+|||||||||||++| |++.+-.- .| .+.++.. ...+++++
T Consensus 42 ~is~~i~~G-e~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~ 120 (264)
T PRK13546 42 DISLKAYEG-DVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEI 120 (264)
T ss_pred eeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHH
Confidence 899999999 99999999999999999999 44432100 00 0111111 01112222
Q ss_pred -----HHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEE
Q 003258 397 -----LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT 470 (835)
Q Consensus 397 -----~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viit 470 (835)
.++..+++.+.+++.+.+||+||+ |++++++++.+|+++||||||+|||+.....+...+ ..+.+.+.|+|++
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L-~~~~~~g~tiIii 199 (264)
T PRK13546 121 KAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKI-YEFKEQNKTIFFV 199 (264)
T ss_pred HHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH-HHHHHCCCEEEEE
Confidence 234455677778889999999999 899999999999999999999999999999999954 4456668999999
Q ss_pred ecchh-HHhhhcccccccCCceee
Q 003258 471 THYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 471 TH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
||+.+ +..+|++++.+.+|.+..
T Consensus 200 sH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 200 SHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred cCCHHHHHHHcCEEEEEECCEEEE
Confidence 99987 567899999999998754
No 258
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.9e-23 Score=241.45 Aligned_cols=168 Identities=14% Similarity=0.136 Sum_probs=133.9
Q ss_pred CeEEEeeeeeecC---Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-h-------c------------
Q 003258 325 SEMTVGSLSKGIS---DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-M-------S------------ 378 (835)
Q Consensus 325 ~~l~~~~ls~~y~---~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-m-------a------------ 378 (835)
.|++++||+++|+ +..+ ++||++.+| ++++|+||||||||||||+| |++.+ . .
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~ 336 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRG-EILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI 336 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCC-cEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 4788999999993 3334 899999999 99999999999999999999 66541 0 0
Q ss_pred -ccceeecCCCC-----CCchH--------------------------HHHHHHHcCCc-ccccCCcccchHHHH-HHHH
Q 003258 379 -KAGLYLPAKNH-----PRLPW--------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVD 424 (835)
Q Consensus 379 -~~G~~vP~~~~-----~~i~~--------------------------~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~ 424 (835)
..-.|+|+... ..+++ +++++..+|+. +..++.+.+|||||+ |+.+
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHH
Confidence 11235665520 01111 23456667775 467899999999999 8999
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 425 ~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|++++.+|+++||||||+|||+.....+.. ++..+.+.|.|||++|||.+ +..+|++.+.+.+|++.++
T Consensus 417 A~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 417 AKCLLLNPKILILDEPTRGIDVGAKYEIYK-LINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGD 486 (506)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHH-HHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999998 55667677899999999987 6789999999999988654
No 259
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.89 E-value=5.7e-23 Score=239.19 Aligned_cols=170 Identities=16% Similarity=0.181 Sum_probs=131.9
Q ss_pred CCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh------------h---------cc
Q 003258 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------M---------SK 379 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------------m---------a~ 379 (835)
..|++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+... . .+
T Consensus 258 ~~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPG-EHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred CceEEEeceEEEECCeeEEeeceEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 358899999999987655 999999999 99999999999999999999 65431 0 00
Q ss_pred cceeecCCCCC--C--ch-------------------------HHHHHHHHcCCcc-cccCCcccchHHHH-HHHHHHHH
Q 003258 380 AGLYLPAKNHP--R--LP-------------------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILEL 428 (835)
Q Consensus 380 ~G~~vP~~~~~--~--i~-------------------------~~d~i~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~l 428 (835)
.-.|+|+.... . .. .++.++..+|+.+ ..++++++|||||+ |+++++++
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al 416 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRAL 416 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHH
Confidence 11234433100 0 00 1234566678876 78899999999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCC-cEEEEEecchhHH-h-hhcccccccCCceeecc
Q 003258 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV-GLAVVTTHYADLS-C-LKDKDTRFENAATEFSL 495 (835)
Q Consensus 429 a~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~-~~viitTH~~el~-~-~~~~~~~~~n~~v~~~~ 495 (835)
+.+|+++||||||+|||+.....+.. ++..+.+.+ +|+|++|||.+.. . +|++.+.+.+|++..+.
T Consensus 417 ~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 417 VKHPTLLILDEPLQGLDPLNRQLVRR-FVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHH-HHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 99999999999999999999999999 444555554 5799999998744 4 58889999999876553
No 260
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.89 E-value=4.8e-23 Score=240.40 Aligned_cols=166 Identities=17% Similarity=0.199 Sum_probs=131.9
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh---hc-------------------cc
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---MS-------------------KA 380 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~---ma-------------------~~ 380 (835)
+++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ -+ +.
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~G-e~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPG-ECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 4689999999987665 999999999 99999999999999999999 66542 00 11
Q ss_pred ceeecCCCC--CCchH-------------------------HHHHHHHcCCcccc-cCCcccchHHHH-HHHHHHHHcCC
Q 003258 381 GLYLPAKNH--PRLPW-------------------------FDLILADIGDHQSL-EQNLSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 381 G~~vP~~~~--~~i~~-------------------------~d~i~~~ig~~~~~-~~~lstfSgg~~-rl~~~~~la~~ 431 (835)
-.|+|+... ..+++ +..++..+|+.... ++.+++|||||+ |+++|++++.+
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~ 159 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQ 159 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhC
Confidence 235666531 01111 22345566665544 577999999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
|+++||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|.+..
T Consensus 160 p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~ 221 (500)
T TIGR02633 160 ARLLILDEPSSSLTEKETEILLD-IIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVA 221 (500)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEee
Confidence 99999999999999999999999 55556777889999999987 667999999999988754
No 261
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.89 E-value=2.1e-23 Score=210.47 Aligned_cols=144 Identities=24% Similarity=0.228 Sum_probs=112.8
Q ss_pred eeeeeecCCcee-ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccc
Q 003258 330 GSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSL 408 (835)
Q Consensus 330 ~~ls~~y~~~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~ 408 (835)
.||++.|++..+ ..++++.+| ++++|+||||+|||||||+| +|+..|.+|...+... .++ ..
T Consensus 4 ~~l~~~~~~~~~l~~~~~i~~G-e~~~l~G~nGsGKSTLl~~l--------~Gl~~p~~G~i~~~g~-----~i~---~~ 66 (177)
T cd03222 4 PDCVKRYGVFFLLVELGVVKEG-EVIGIVGPNGTGKTTAVKIL--------AGQLIPNGDNDEWDGI-----TPV---YK 66 (177)
T ss_pred CCeEEEECCEEEEccCcEECCC-CEEEEECCCCChHHHHHHHH--------HcCCCCCCcEEEECCE-----EEE---EE
Confidence 578999988776 445899999 99999999999999999999 8888888775433210 011 01
Q ss_pred cCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccc
Q 003258 409 EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRF 486 (835)
Q Consensus 409 ~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~ 486 (835)
.+... ||+||+ |++++++++.+|+++||||||+|+|+.....+...+.+...+.+.++|++||+.+ +..+|++.+.+
T Consensus 67 ~q~~~-LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 145 (177)
T cd03222 67 PQYID-LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVF 145 (177)
T ss_pred cccCC-CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEE
Confidence 11111 999999 8999999999999999999999999999999999555543333489999999987 55689988877
Q ss_pred cCCce
Q 003258 487 ENAAT 491 (835)
Q Consensus 487 ~n~~v 491 (835)
.++..
T Consensus 146 ~~~~~ 150 (177)
T cd03222 146 EGEPG 150 (177)
T ss_pred cCCCc
Confidence 76543
No 262
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.1e-23 Score=217.65 Aligned_cols=166 Identities=17% Similarity=0.249 Sum_probs=128.2
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------c------------------
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S------------------ 378 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------a------------------ 378 (835)
+++++|+++.|+++.+ ++||++.+| ++++|+||||+|||||||+| |+..+- +
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPAR-QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 5889999999987665 999999999 99999999999999999999 665420 0
Q ss_pred -ccceeecCCCCC-CchHHHHH----------------------HHHcCCc----ccccCCcccchHHHH-HHHHHHHHc
Q 003258 379 -KAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILELV 429 (835)
Q Consensus 379 -~~G~~vP~~~~~-~i~~~d~i----------------------~~~ig~~----~~~~~~lstfSgg~~-rl~~~~~la 429 (835)
+.-.|+|+.... ..+..+++ +..+|.. +..++.+.+||+||+ |++++++++
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 161 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIA 161 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHH
Confidence 112355554311 11222222 2223332 245678899999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
.+|+++||||||+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 162 ~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~ 225 (249)
T PRK14253 162 MEPDVILMDEPTSALDPIATHKIEE-LMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEH 225 (249)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999 5555665 589999999987 5778999999999988653
No 263
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=9.9e-23 Score=218.25 Aligned_cols=169 Identities=20% Similarity=0.224 Sum_probs=128.3
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------c-----------------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S----------------- 378 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------a----------------- 378 (835)
++++++|+++.|++..+ ++||++.+| ++++|+||||+||||||++| |+..+- +
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQS-KVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCC-cEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 47899999999987554 999999999 99999999999999999999 665421 1
Q ss_pred ---ccceeecCCCC-CCchHHHH----------------------HHHHcCCc----ccccCCcccchHHHH-HHHHHHH
Q 003258 379 ---KAGLYLPAKNH-PRLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (835)
Q Consensus 379 ---~~G~~vP~~~~-~~i~~~d~----------------------i~~~ig~~----~~~~~~lstfSgg~~-rl~~~~~ 427 (835)
+...++|+... ....+.++ ++..+++. ...++.+.+|||||+ |++++++
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 164 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARA 164 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 01123344321 01122222 22334432 235678899999999 8999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccC-----Cceeec
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN-----AATEFS 494 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n-----~~v~~~ 494 (835)
++.+|+++||||||+|+|+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+ |.+...
T Consensus 165 l~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 165 LAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 999999999999999999999999999555433345889999999987 6779999999998 887654
No 264
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.89 E-value=1.1e-22 Score=210.12 Aligned_cols=163 Identities=15% Similarity=0.116 Sum_probs=123.9
Q ss_pred CCeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cc
Q 003258 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK 379 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~ 379 (835)
.+.++++|+++.|++ ..+ ++||++.+| ++++|+||||+|||||||+| |+..+- .+
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPDLPPVLKNVSFKVKAG-EKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCCCcccccCceEEECCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 357899999999975 234 999999999 99999999999999999999 554310 11
Q ss_pred cceeecCCCCC-CchHHHHH-----------HHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCH
Q 003258 380 AGLYLPAKNHP-RLPWFDLI-----------LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (835)
Q Consensus 380 ~G~~vP~~~~~-~i~~~d~i-----------~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp 446 (835)
.-.|+|+.... ...+.+++ ...++ ++.++.+||+||+ |++++++++.+|+++||||||+|||+
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~ 158 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDY 158 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCH
Confidence 12355555311 11222222 11121 4678899999999 89999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 447 SEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 447 ~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
.....+...+. .+.+ +.|+|++||+.+....|++.+.+.+|.+..
T Consensus 159 ~~~~~l~~~l~-~~~~-~~tiii~th~~~~~~~~d~v~~l~~g~i~~ 203 (207)
T cd03369 159 ATDALIQKTIR-EEFT-NSTILTIAHRLRTIIDYDKILVMDAGEVKE 203 (207)
T ss_pred HHHHHHHHHHH-HhcC-CCEEEEEeCCHHHHhhCCEEEEEECCEEEe
Confidence 99999988444 4444 789999999988555689999999988754
No 265
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.89 E-value=5.4e-23 Score=241.55 Aligned_cols=168 Identities=17% Similarity=0.192 Sum_probs=132.5
Q ss_pred CeEEEeeeeeecCC----cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------c-------------
Q 003258 325 SEMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S------------- 378 (835)
Q Consensus 325 ~~l~~~~ls~~y~~----~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------a------------- 378 (835)
.|++++|+++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+- +
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~G-e~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAG-ETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCC-CEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 58999999999963 334 999999999 99999999999999999999 766420 0
Q ss_pred ---------ccceeecCCCCC----CchH----------------------HHHHHHHcCCcc---cccCCcccchHHHH
Q 003258 379 ---------KAGLYLPAKNHP----RLPW----------------------FDLILADIGDHQ---SLEQNLSTFSGHIS 420 (835)
Q Consensus 379 ---------~~G~~vP~~~~~----~i~~----------------------~d~i~~~ig~~~---~~~~~lstfSgg~~ 420 (835)
+.-.++|+.... ...+ +++++..+|+.+ ..++.+++|||||+
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~ 162 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence 112356665310 0111 123455567754 35889999999999
Q ss_pred -HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 421 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 421 -rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|+++|++++.+|+++||||||+||||.....+.. ++..+.+ .+.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~ 238 (529)
T PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQ-LLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQ 238 (529)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH-HHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEe
Confidence 8999999999999999999999999999999999 5555654 4889999999987 5679999999999987644
No 266
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.89 E-value=1e-22 Score=225.19 Aligned_cols=169 Identities=18% Similarity=0.195 Sum_probs=131.9
Q ss_pred CCeEEEeeeeeecCC----c-ee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------
Q 003258 324 NSEMTVGSLSKGISD----F-PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------- 377 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~----~-~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------------------- 377 (835)
..+++++||++.|+. . .+ ++||++.+| ++++|+|+||||||||+++| |++..-
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~G-e~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAG-ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCC-CEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 458999999999942 2 23 999999999 99999999999999999999 666321
Q ss_pred -------cccceeecCCCCC----CchH----------------------HHHHHHHcCCcc---cccCCcccchHHHH-
Q 003258 378 -------SKAGLYLPAKNHP----RLPW----------------------FDLILADIGDHQ---SLEQNLSTFSGHIS- 420 (835)
Q Consensus 378 -------a~~G~~vP~~~~~----~i~~----------------------~d~i~~~ig~~~---~~~~~lstfSgg~~- 420 (835)
.+.-.++|++... .+.+ +.+++..+|+.+ .++++++.|||||+
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~Q 168 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQ 168 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHH
Confidence 0122466766411 1111 123355566643 34678999999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchhH-HhhhcccccccCCceeec
Q 003258 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (835)
Q Consensus 421 rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~el-~~~~~~~~~~~n~~v~~~ 494 (835)
|++++++++.+|+|||+||||+|||+..+..+.. ++..+.+ .+.|+|++|||..+ ..+||++..+.+|.+...
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMT-LLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 8999999999999999999999999999999999 4445544 58899999999885 568999999999988654
No 267
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=9.8e-23 Score=205.39 Aligned_cols=146 Identities=27% Similarity=0.320 Sum_probs=114.0
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH----HhhhhhcccceeecCCCCCCchHH--HHHHHHcCCcc-cccCCccc
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL----GLASLMSKAGLYLPAKNHPRLPWF--DLILADIGDHQ-SLEQNLST 414 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i----Gli~~ma~~G~~vP~~~~~~i~~~--d~i~~~ig~~~-~~~~~lst 414 (835)
++||++.+| ++++|+||||||||||||++ |-+.+. |. .+......+.++ .+++..+++.. .+++++++
T Consensus 13 ~isl~i~~G-~~~~l~G~nG~GKSTLl~~il~~~G~v~~~---~~-~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~ 87 (176)
T cd03238 13 NLDVSIPLN-VLVVVTGVSGSGKSTLVNEGLYASGKARLI---SF-LPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLST 87 (176)
T ss_pred ceEEEEcCC-CEEEEECCCCCCHHHHHHHHhhcCCcEEEC---Cc-ccccccccEEEEhHHHHHHHcCCCccccCCCcCc
Confidence 899999999 99999999999999999998 111110 10 011000011111 34678888876 48899999
Q ss_pred chHHHH-HHHHHHHHcCC--CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCce
Q 003258 415 FSGHIS-RIVDILELVSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT 491 (835)
Q Consensus 415 fSgg~~-rl~~~~~la~~--~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v 491 (835)
||+||+ |++++++++.+ |+++||||||+|+|+.....+...+ ..+.+.|.++|++||+.+...+|++++.+.+|..
T Consensus 88 LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l-~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVI-KGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 999999 89999999999 9999999999999999999999955 4455578999999999987678999888877655
Q ss_pred ee
Q 003258 492 EF 493 (835)
Q Consensus 492 ~~ 493 (835)
..
T Consensus 167 ~~ 168 (176)
T cd03238 167 KS 168 (176)
T ss_pred CC
Confidence 43
No 268
>PRK13409 putative ATPase RIL; Provisional
Probab=99.89 E-value=6.4e-23 Score=242.46 Aligned_cols=163 Identities=25% Similarity=0.260 Sum_probs=130.7
Q ss_pred CeEEEeeeeeecCCcee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhc------ccceeecCCCCC--CchH
Q 003258 325 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNHP--RLPW 394 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma------~~G~~vP~~~~~--~i~~ 394 (835)
.+++++|+++.|++..+ ++++++.+| ++++|+||||+|||||||+| |++.+.. ..-.|+|+.... .+++
T Consensus 339 ~~l~~~~ls~~~~~~~l~~~s~~i~~G-eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv 417 (590)
T PRK13409 339 TLVEYPDLTKKLGDFSLEVEGGEIYEG-EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTV 417 (590)
T ss_pred eEEEEcceEEEECCEEEEecceEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcH
Confidence 57889999999987555 889999999 99999999999999999999 6654321 012356665321 1111
Q ss_pred ----------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHH
Q 003258 395 ----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSIL 457 (835)
Q Consensus 395 ----------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all 457 (835)
.++++..+|+.+..++++++|||||+ |+++|++++.+|+++||||||+|||+..+..+...+.
T Consensus 418 ~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~ 497 (590)
T PRK13409 418 EDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIR 497 (590)
T ss_pred HHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 23456778888888999999999999 8999999999999999999999999999999999554
Q ss_pred HHHhcCCcEEEEEecchh-HHhhhcccccccC
Q 003258 458 QYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (835)
Q Consensus 458 ~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n 488 (835)
+...+.+.|+|++|||.+ +..+|++++.+.+
T Consensus 498 ~l~~~~g~tviivsHD~~~~~~~aDrvivl~~ 529 (590)
T PRK13409 498 RIAEEREATALVVDHDIYMIDYISDRLMVFEG 529 (590)
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 443445889999999987 5668999888765
No 269
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.89 E-value=8.4e-23 Score=239.44 Aligned_cols=169 Identities=18% Similarity=0.214 Sum_probs=131.5
Q ss_pred CeEEEeeeeeecCC-----cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh------h--c----------
Q 003258 325 SEMTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M--S---------- 378 (835)
Q Consensus 325 ~~l~~~~ls~~y~~-----~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------m--a---------- 378 (835)
.|++++||+++|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+ + .
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEG-EIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 47889999999942 334 999999999 99999999999999999999 66421 1 1
Q ss_pred --------ccceeecCCCC--CCchHH--------------------HHHHHHcCCcc-----cccCCcccchHHHH-HH
Q 003258 379 --------KAGLYLPAKNH--PRLPWF--------------------DLILADIGDHQ-----SLEQNLSTFSGHIS-RI 422 (835)
Q Consensus 379 --------~~G~~vP~~~~--~~i~~~--------------------d~i~~~ig~~~-----~~~~~lstfSgg~~-rl 422 (835)
+.-.|+|+... ..+.++ ..++..+|+.+ ..++++++|||||+ |+
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv 436 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRV 436 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHH
Confidence 01136666531 111221 12355667753 46899999999999 89
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 423 ~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++++++.+|++|||||||+|||+.....+...+.+...+.|.++|++|||.+ +..+|++++.+.+|.+...
T Consensus 437 ~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 509 (520)
T TIGR03269 437 ALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKI 509 (520)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999554433445899999999987 6679999999999987653
No 270
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.89 E-value=9.8e-23 Score=238.35 Aligned_cols=166 Identities=16% Similarity=0.199 Sum_probs=133.3
Q ss_pred CeEEEeeeeeecCCcee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc-------------ccce
Q 003258 325 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS-------------KAGL 382 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma-------------~~G~ 382 (835)
.|++++|+++.|+. .+ ++||++.+| ++++|+||||||||||||+| |++.+ .. +.-.
T Consensus 264 ~~l~~~~l~~~~~~-~l~~isl~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 341 (510)
T PRK09700 264 TVFEVRNVTSRDRK-KVRDISFSVCRG-EILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341 (510)
T ss_pred cEEEEeCccccCCC-cccceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE
Confidence 47899999998753 44 999999999 99999999999999999999 66432 11 1123
Q ss_pred eecCCC---C--CCchH------------------------------HHHHHHHcCCc-ccccCCcccchHHHH-HHHHH
Q 003258 383 YLPAKN---H--PRLPW------------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDI 425 (835)
Q Consensus 383 ~vP~~~---~--~~i~~------------------------------~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~ 425 (835)
|+|+.. . ..+++ +++++..+|+. +..++++++|||||+ |+.+|
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lA 421 (510)
T PRK09700 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLIS 421 (510)
T ss_pred EccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHH
Confidence 667641 0 00011 23456778886 678999999999999 89999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 426 ~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
++++.+|++|||||||+|||+.....+.. ++..+.+.|.|+|++|||.+ +..+|++++.+.+|.+..
T Consensus 422 ral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 422 KWLCCCPEVIIFDEPTRGIDVGAKAEIYK-VMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred HHHhcCCCEEEECCCCCCcCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999 55556666899999999987 678999999999998754
No 271
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.8e-22 Score=208.20 Aligned_cols=164 Identities=18% Similarity=0.190 Sum_probs=120.9
Q ss_pred eEEEeeeeeecC----Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh---hh-c----------------
Q 003258 326 EMTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---LM-S---------------- 378 (835)
Q Consensus 326 ~l~~~~ls~~y~----~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~---~m-a---------------- 378 (835)
.+.++||+|.|+ ++.+ ++||++.+| ++++|+|||||||||||++| |+.. +- +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPG-EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCC-cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 467899999995 3344 999999999 99999999999999999999 6554 10 0
Q ss_pred -ccceeecCCCC--CCchHHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHH
Q 003258 379 -KAGLYLPAKNH--PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALAT 454 (835)
Q Consensus 379 -~~G~~vP~~~~--~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~ 454 (835)
+.-.++|+... ..+++.+++...... ..++.+..||+||+ |++++++++.+|+++||||||+|+|+.....+..
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~--~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~ 159 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC--KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILK 159 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh--ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHH
Confidence 00124444321 123344444221111 16788899999999 7999999999999999999999999999999999
Q ss_pred HHHHHHhc-CCcEEEEE-ecch-hHHhhhcccccccCCceee
Q 003258 455 SILQYLRD-RVGLAVVT-THYA-DLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 455 all~~l~~-~~~~viit-TH~~-el~~~~~~~~~~~n~~v~~ 493 (835)
.+. .+.+ .+.++|++ ||+. ++..+|++.+.+.+|.+..
T Consensus 160 ~l~-~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~ 200 (202)
T cd03233 160 CIR-TMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIY 200 (202)
T ss_pred HHH-HHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEe
Confidence 554 4544 35665555 5554 4778999999999998753
No 272
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.9e-22 Score=215.00 Aligned_cols=167 Identities=16% Similarity=0.194 Sum_probs=128.0
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------c-----------------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S----------------- 378 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------a----------------- 378 (835)
.||.++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |+..+. +
T Consensus 5 ~~i~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 5 IILSTKNLNLWYGEKHALYDITISIPKN-RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred ceEEEeeeEEEECCeeeeeeeEEEECCC-cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 47899999999987665 999999999 99999999999999999999 553210 0
Q ss_pred ---ccceeecCCCCCC-chHHH----------------------HHHHHcCCc----ccccCCcccchHHHH-HHHHHHH
Q 003258 379 ---KAGLYLPAKNHPR-LPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDILE 427 (835)
Q Consensus 379 ---~~G~~vP~~~~~~-i~~~d----------------------~i~~~ig~~----~~~~~~lstfSgg~~-rl~~~~~ 427 (835)
+...|+|+..... .++.+ +++..+++. ..+++.+..||+||+ |++++++
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 163 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIART 163 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHH
Confidence 1123455543110 11111 122333432 235788899999999 8999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 164 l~~~p~lllLDEP~~gLD~~~~~~l~~-~l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14261 164 LAVNPEVILMDEPCSALDPIATAKIED-LIEDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEF 229 (253)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEc
Confidence 999999999999999999999999988 4455555 589999999987 5579999999999987643
No 273
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.2e-22 Score=218.90 Aligned_cols=168 Identities=18% Similarity=0.210 Sum_probs=129.6
Q ss_pred CCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh------hc----------------
Q 003258 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------MS---------------- 378 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------ma---------------- 378 (835)
.++++++|+++.|+++.+ ++||++.+| ++++|+|||||||||||++| |+..+ -+
T Consensus 23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~G-e~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQALFDISMRIPKN-RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CcEEEEEEEEEEECCeeEeeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 468999999999987655 999999999 99999999999999999999 66431 00
Q ss_pred ----ccceeecCCCCC-CchHHHH----------------------HHHHcCCc----ccccCCcccchHHHH-HHHHHH
Q 003258 379 ----KAGLYLPAKNHP-RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDIL 426 (835)
Q Consensus 379 ----~~G~~vP~~~~~-~i~~~d~----------------------i~~~ig~~----~~~~~~lstfSgg~~-rl~~~~ 426 (835)
+.-.|+|+.... ..++.++ ++..+++. ...++.+.+||+||+ |+++++
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 181 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIAR 181 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHH
Confidence 111355554310 0122222 22333443 235678899999999 899999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 427 ~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++.+|+++||||||+|||+.....+...+. .+.+ +.++|++||+.+ +..+|++++.+.+|.+..+
T Consensus 182 al~~~p~lllLDEPt~gLD~~~~~~l~~~L~-~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 182 AIAIEPEVLLLDEPTSALDPISTLKIEELIT-ELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred HHHCCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEec
Confidence 9999999999999999999999999988554 4555 689999999987 5679999999999988654
No 274
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.89 E-value=1.1e-22 Score=240.28 Aligned_cols=161 Identities=17% Similarity=0.197 Sum_probs=126.6
Q ss_pred CeEEEeeeeeecC-Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------cccceeecCCCCC-
Q 003258 325 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------SKAGLYLPAKNHP- 390 (835)
Q Consensus 325 ~~l~~~~ls~~y~-~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m---------a~~G~~vP~~~~~- 390 (835)
.||+++||++.|+ ++.+ ++||++.+| ++++|+||||||||||||+| |++.+. ... .|+|+....
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~G-e~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i-~~v~Q~~~~~ 82 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPG-AKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKV-GYLPQEPQLD 82 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEE-EEEecCCCCC
Confidence 4899999999998 6655 999999999 99999999999999999999 665431 112 366666421
Q ss_pred -CchHHHHH---------------------------------------------------------HHHcCCcccccCCc
Q 003258 391 -RLPWFDLI---------------------------------------------------------LADIGDHQSLEQNL 412 (835)
Q Consensus 391 -~i~~~d~i---------------------------------------------------------~~~ig~~~~~~~~l 412 (835)
.+++++++ +..+|+. ..++.+
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~ 161 (556)
T PRK11819 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKV 161 (556)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCch
Confidence 22333322 1223332 357889
Q ss_pred ccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCc
Q 003258 413 STFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (835)
Q Consensus 413 stfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~ 490 (835)
++|||||+ |++++++++.+|+++||||||+|||+.....+.. ++..+ +.|+|++||+.+ +..+|++++.+.+|.
T Consensus 162 ~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~-~L~~~---~~tviiisHd~~~~~~~~d~i~~l~~g~ 237 (556)
T PRK11819 162 TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQ-FLHDY---PGTVVAVTHDRYFLDNVAGWILELDRGR 237 (556)
T ss_pred hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHH-HHHhC---CCeEEEEeCCHHHHHhhcCeEEEEeCCE
Confidence 99999999 8999999999999999999999999999998888 44433 469999999987 667899999999987
Q ss_pred ee
Q 003258 491 TE 492 (835)
Q Consensus 491 v~ 492 (835)
+.
T Consensus 238 i~ 239 (556)
T PRK11819 238 GI 239 (556)
T ss_pred EE
Confidence 65
No 275
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.88 E-value=8.7e-23 Score=240.86 Aligned_cols=164 Identities=22% Similarity=0.288 Sum_probs=128.9
Q ss_pred CCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------cc--cceeecCCCC---
Q 003258 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SK--AGLYLPAKNH--- 389 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------a~--~G~~vP~~~~--- 389 (835)
+.|++++|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+. .. .-.|+|+...
T Consensus 320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~ 398 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPG-GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALD 398 (552)
T ss_pred CeEEEEeeEEEEECCeeeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccC
Confidence 458999999999987655 999999999 99999999999999999999 665331 11 1135666521
Q ss_pred CCchHH-------------------HHHHHHcCCcc-cccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHh
Q 003258 390 PRLPWF-------------------DLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (835)
Q Consensus 390 ~~i~~~-------------------d~i~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~ 448 (835)
..++++ ..++..+|+.. ..++.+++|||||+ |++++++++.+|+++||||||+|||+..
T Consensus 399 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~ 478 (552)
T TIGR03719 399 PNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478 (552)
T ss_pred CCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 111221 23456677754 46899999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCC-cee
Q 003258 449 GVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA-ATE 492 (835)
Q Consensus 449 ~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~-~v~ 492 (835)
...|...+.+ + ++++|++|||.+ +..+|++++.+.++ .+.
T Consensus 479 ~~~l~~~l~~-~---~~~viivsHd~~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 479 LRALEEALLE-F---AGCAVVISHDRWFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred HHHHHHHHHH-C---CCeEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence 9999985544 3 348999999987 66789999888764 544
No 276
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.88 E-value=8.6e-23 Score=239.84 Aligned_cols=168 Identities=17% Similarity=0.181 Sum_probs=132.0
Q ss_pred CeEEEeeeeeecC-----------Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh------hh-------
Q 003258 325 SEMTVGSLSKGIS-----------DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS------LM------- 377 (835)
Q Consensus 325 ~~l~~~~ls~~y~-----------~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~------~m------- 377 (835)
.|++++|+++.|+ ++.+ ++||++.+| ++++|+||||||||||||+| |++. +.
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPG-ETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEcccc
Confidence 4788999999995 2344 999999999 99999999999999999999 6542 10
Q ss_pred --------cccceeecCCCC----CCchH-----------------------HHHHHHHcCCc-ccccCCcccchHHHH-
Q 003258 378 --------SKAGLYLPAKNH----PRLPW-----------------------FDLILADIGDH-QSLEQNLSTFSGHIS- 420 (835)
Q Consensus 378 --------a~~G~~vP~~~~----~~i~~-----------------------~d~i~~~ig~~-~~~~~~lstfSgg~~- 420 (835)
.+.-.|+|+... ..+.+ +.+++..+|+. ...++++++|||||+
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q 432 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQ 432 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHH
Confidence 111236666531 01111 12345667776 467899999999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 421 rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|++++++++.+|+++||||||+|||+.....+...+. .+.+ .+.|+|++|||.+ +..+|++++.+.+|.+...
T Consensus 433 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 507 (529)
T PRK15134 433 RIAIARALILKPSLIILDEPTSSLDKTVQAQILALLK-SLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQ 507 (529)
T ss_pred HHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHH-HHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEE
Confidence 8999999999999999999999999999999999444 4554 5889999999987 6679999999999987643
No 277
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.6e-22 Score=217.13 Aligned_cols=161 Identities=18% Similarity=0.277 Sum_probs=123.1
Q ss_pred CCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-----h-c----------------
Q 003258 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M-S---------------- 378 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-----m-a---------------- 378 (835)
..||+++||++.|++..+ ++||++.+| ++++|+||||+|||||||+| |+..+ . +
T Consensus 8 ~~~l~i~~v~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 8 ETVLRTENLNVYYGSFLAVKNVWLDIPKN-QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred ceEEEEeeeEEEECCEEEeecceEEEcCC-CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 458999999999987655 999999999 99999999999999999999 66431 0 0
Q ss_pred ----ccceeecCCCCC-CchHHHHH--------------------HHHcCCc----ccccCCcccchHHHH-HHHHHHHH
Q 003258 379 ----KAGLYLPAKNHP-RLPWFDLI--------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (835)
Q Consensus 379 ----~~G~~vP~~~~~-~i~~~d~i--------------------~~~ig~~----~~~~~~lstfSgg~~-rl~~~~~l 428 (835)
+.-.|+|+.... ..++++++ +..++.. +..++.+.+|||||+ |+++++++
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral 166 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAI 166 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 011344544210 01222222 2333332 235678889999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccccc
Q 003258 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE 487 (835)
Q Consensus 429 a~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~ 487 (835)
+.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.
T Consensus 167 ~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 167 AVQPEVILMDEPCSALDPISTLRIEE-LMHELKE-QYTIIIVTHNMQQAARVSDMTAFFN 224 (264)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999998 5555555 479999999987 778999998887
No 278
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.1e-22 Score=243.03 Aligned_cols=169 Identities=15% Similarity=0.115 Sum_probs=134.0
Q ss_pred CCeEEEeeeeeecCC-----------ce-e-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc----
Q 003258 324 NSEMTVGSLSKGISD-----------FP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS---- 378 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~-----------~~-v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma---- 378 (835)
..|++++||++.|+. .. + ++||++.+| ++++|+||||||||||||+| |++.+ ..
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~ 389 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPG-ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID 389 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence 458999999999961 23 3 999999999 99999999999999999999 66532 11
Q ss_pred -----------ccceeecCCCC----CCchH----------------------HHHHHHHcCCc-ccccCCcccchHHHH
Q 003258 379 -----------KAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS 420 (835)
Q Consensus 379 -----------~~G~~vP~~~~----~~i~~----------------------~d~i~~~ig~~-~~~~~~lstfSgg~~ 420 (835)
+.-.|+|+... ..+.+ +.+++..+|+. ...++++++|||||+
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqr 469 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQR 469 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHH
Confidence 11246777631 11111 12346667875 567899999999999
Q ss_pred -HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 421 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 421 -rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|+++|++++.+|+||||||||+|||+.....+.. ++..+.+ .|.|+|++|||++ +..+|++++.+.+|++...
T Consensus 470 QRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~-ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~ 545 (623)
T PRK10261 470 QRICIARALALNPKVIIADEAVSALDVSIRGQIIN-LLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEI 545 (623)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 8999999999999999999999999999999999 4444544 5889999999987 5679999999999988643
No 279
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.4e-22 Score=215.81 Aligned_cols=164 Identities=18% Similarity=0.245 Sum_probs=127.3
Q ss_pred EEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh------h--------------------c
Q 003258 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M--------------------S 378 (835)
Q Consensus 328 ~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------m--------------------a 378 (835)
+++||++.|+++.+ ++||++.+| ++++|+||||||||||+|+| |+..+ - .
T Consensus 7 ~~~~l~~~~~~~~~l~~is~~i~~G-e~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 7 SVKNLNLWYGSKQILFDINLDIYKR-EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EeeeEEEEECCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 57899999987655 999999999 99999999999999999999 66531 0 0
Q ss_pred ccceeecCCCCC-CchHHH-----------------------HHHHHcCCcc----cccCCcccchHHHH-HHHHHHHHc
Q 003258 379 KAGLYLPAKNHP-RLPWFD-----------------------LILADIGDHQ----SLEQNLSTFSGHIS-RIVDILELV 429 (835)
Q Consensus 379 ~~G~~vP~~~~~-~i~~~d-----------------------~i~~~ig~~~----~~~~~lstfSgg~~-rl~~~~~la 429 (835)
+.-.|+|+.... ...+.+ .++..+|+.. .+++.+..||+||+ |++++++++
T Consensus 86 ~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 165 (251)
T PRK14244 86 AKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA 165 (251)
T ss_pred hhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence 112356665311 001111 2345556543 35678899999999 799999999
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 229 (251)
T PRK14244 166 VKPTMLLMDEPCSALDPVATNVIEN-LIQELKK-NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEY 229 (251)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence 9999999999999999999999988 5545554 789999999987 5678999999999988653
No 280
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=1.5e-22 Score=206.58 Aligned_cols=168 Identities=25% Similarity=0.345 Sum_probs=134.8
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hcccc-
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG- 381 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~~G- 381 (835)
.|++++||+..||...+ ++||++++| ++++|+||||+|||||||+| |++.. .++.|
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~G-eiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERG-EIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 48899999999998666 999999999 99999999999999999999 55543 12233
Q ss_pred eeecCCCC--CCchH--------------------HHHHHHHcC-CcccccCCcccchHHHH-HHHHHHHHcCCCcEEEE
Q 003258 382 LYLPAKNH--PRLPW--------------------FDLILADIG-DHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (835)
Q Consensus 382 ~~vP~~~~--~~i~~--------------------~d~i~~~ig-~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLL 437 (835)
.|+|+... +.+++ .+.+|+.+- +.+..++.-.+||||++ .++++++++.+|.|+||
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLL 160 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLL 160 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEe
Confidence 35565431 22222 333444443 34567789999999999 58888999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHHhcC-CcEEEEEecchhH-HhhhcccccccCCceeec
Q 003258 438 DEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (835)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~-~~~viitTH~~el-~~~~~~~~~~~n~~v~~~ 494 (835)
|||+.||-|.-...|.. ++..+++. +.||+++-++... ..++|+.+.+.+|.+.+.
T Consensus 161 DEPs~GLaP~iv~~I~~-~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~ 218 (237)
T COG0410 161 DEPSEGLAPKIVEEIFE-AIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLS 218 (237)
T ss_pred cCCccCcCHHHHHHHHH-HHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEe
Confidence 99999999999999999 66667754 6799999999875 469999999999999876
No 281
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.88 E-value=9.3e-23 Score=216.91 Aligned_cols=162 Identities=19% Similarity=0.295 Sum_probs=126.6
Q ss_pred EEeeeeeecCCcee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh------h------------cccceeecCC
Q 003258 328 TVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M------------SKAGLYLPAK 387 (835)
Q Consensus 328 ~~~~ls~~y~~~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------m------------a~~G~~vP~~ 387 (835)
+++||+++ . .+ ++||++.+| ++++|+|||||||||||++| |+... . .+.-.|+|+.
T Consensus 2 ~~~~l~~~--~-~l~~vsl~i~~G-ei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 77 (248)
T PRK03695 2 QLNDVAVS--T-RLGPLSAEVRAG-EILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQ 77 (248)
T ss_pred cccccchh--c-eecceEEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEeccc
Confidence 35677775 1 34 999999999 99999999999999999999 55421 0 0112356655
Q ss_pred CCC--CchH--------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcC-------CCcEEEE
Q 003258 388 NHP--RLPW--------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS-------RESLVLI 437 (835)
Q Consensus 388 ~~~--~i~~--------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~-------~~~LlLL 437 (835)
... .++. +++++..+|+.+..++.+.+||+||+ |++++++++. +|+++||
T Consensus 78 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 78 QTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred CccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 310 1111 34556777888788999999999999 7999999986 6799999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 158 DEPt~~LD~~~~~~l~~-~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~ 214 (248)
T PRK03695 158 DEPMNSLDVAQQAALDR-LLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLAS 214 (248)
T ss_pred cCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999998 55556666889999999987 7789999999999988643
No 282
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.88 E-value=8.4e-23 Score=208.30 Aligned_cols=133 Identities=23% Similarity=0.252 Sum_probs=105.1
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------------------cccceeecCCCC---CCchH--
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAGLYLPAKNH---PRLPW-- 394 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m---------------------a~~G~~vP~~~~---~~i~~-- 394 (835)
++||++.+| ++++|+||||||||||||+| |+..+- .+.-.++|+... ....+
T Consensus 10 ~vsl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~ 88 (190)
T TIGR01166 10 GLNFAAERG-EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQ 88 (190)
T ss_pred ceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHH
Confidence 899999999 99999999999999999999 554320 011235666531 11111
Q ss_pred -------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHH
Q 003258 395 -------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALAT 454 (835)
Q Consensus 395 -------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~ 454 (835)
++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||+|||+.....+..
T Consensus 89 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~ 168 (190)
T TIGR01166 89 DVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA 168 (190)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 22345667787788999999999999 8999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEecchhH
Q 003258 455 SILQYLRDRVGLAVVTTHYADL 476 (835)
Q Consensus 455 all~~l~~~~~~viitTH~~el 476 (835)
. +..+.+.+.++|++||+.++
T Consensus 169 ~-l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 169 I-LRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred H-HHHHHHcCCEEEEEeecccc
Confidence 4 55556668899999999763
No 283
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.88 E-value=1.4e-22 Score=211.06 Aligned_cols=162 Identities=17% Similarity=0.166 Sum_probs=120.9
Q ss_pred EEeeeeeecCC-cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----------------------ccc
Q 003258 328 TVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKA 380 (835)
Q Consensus 328 ~~~~ls~~y~~-~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-----------------------a~~ 380 (835)
.+.|+.+.|++ ..+ ++||++.+| ++++|+|||||||||||++| |++.+. .+.
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTG-QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 36788999974 334 999999999 99999999999999999999 554320 011
Q ss_pred ceeecCCCCC-CchHHH--------------HHHHHcCCcc-----------cccCCcccchHHHH-HHHHHHHHcCCCc
Q 003258 381 GLYLPAKNHP-RLPWFD--------------LILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRES 433 (835)
Q Consensus 381 G~~vP~~~~~-~i~~~d--------------~i~~~ig~~~-----------~~~~~lstfSgg~~-rl~~~~~la~~~~ 433 (835)
-.|+|+.... ..+..+ .++..+++.. .++..+.+||+||+ |++++++++.+|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 1245555310 112222 2223333322 13457889999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHH-HHHHHhcCCcEEEEEecchhHHhhhcccccccCCc
Q 003258 434 LVLIDEIGSGTDPSEGVALATS-ILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA 490 (835)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~a-ll~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~ 490 (835)
++||||||+|||+.....+... ++..+.+.+.|+|++||+.+....|++.+.+.+|+
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999999999884 77777777899999999988656788887777663
No 284
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.88 E-value=1.3e-22 Score=239.58 Aligned_cols=164 Identities=21% Similarity=0.272 Sum_probs=129.0
Q ss_pred CCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------cc--cceeecCCC-C--
Q 003258 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SK--AGLYLPAKN-H-- 389 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------a~--~G~~vP~~~-~-- 389 (835)
+.|++++||++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+. .. .-.|+|+.. .
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~ 400 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPG-GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALD 400 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcC
Confidence 358999999999987665 999999999 99999999999999999999 655321 11 113666653 1
Q ss_pred CCchHHH-------------------HHHHHcCCcc-cccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHh
Q 003258 390 PRLPWFD-------------------LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (835)
Q Consensus 390 ~~i~~~d-------------------~i~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~ 448 (835)
..+++++ .++..+|+.. ..++.+++|||||+ |++++++++.+|+++||||||+|||+..
T Consensus 401 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 480 (556)
T PRK11819 401 PNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVET 480 (556)
T ss_pred CCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 1122222 3455677753 56889999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccC-Ccee
Q 003258 449 GVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN-AATE 492 (835)
Q Consensus 449 ~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n-~~v~ 492 (835)
...|...+.+ + ++++|++|||.+ +..+|++++.+.+ |.+.
T Consensus 481 ~~~l~~~l~~-~---~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 481 LRALEEALLE-F---PGCAVVISHDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred HHHHHHHHHh-C---CCeEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence 9999985544 3 348999999987 6678999988876 5544
No 285
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.88 E-value=9e-23 Score=228.49 Aligned_cols=163 Identities=17% Similarity=0.153 Sum_probs=129.6
Q ss_pred eeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc--------------------cc
Q 003258 331 SLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS--------------------KA 380 (835)
Q Consensus 331 ~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma--------------------~~ 380 (835)
++.+.|+...+ ++||++.+| ++++|+||||||||||||+| |++.+ .. +.
T Consensus 29 ~~~~~~g~~~~l~~vsf~i~~G-ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 29 EILDETGLVVGVANASLDIEEG-EICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHhhCCEEEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 46677776654 999999999 99999999999999999999 54421 11 11
Q ss_pred ceeecCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEE
Q 003258 381 GLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (835)
Q Consensus 381 G~~vP~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlL 436 (835)
-.|+|+.... .+++ +.+++..+|+.+..++++..|||||+ |+.++++++.+|+++|
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILL 187 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILL 187 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2356655411 1112 22346677888888999999999999 8999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|||||+||||..+..+...+.+...+.+.|+|++|||.+ +..+|+++..+.+|.+...
T Consensus 188 lDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~ 246 (382)
T TIGR03415 188 MDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQH 246 (382)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999666544445899999999987 5689999999999987643
No 286
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.88 E-value=2e-22 Score=237.77 Aligned_cols=163 Identities=17% Similarity=0.180 Sum_probs=125.7
Q ss_pred CeEEEeeeeeecC-Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------cccceeecCCCCC--
Q 003258 325 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------SKAGLYLPAKNHP-- 390 (835)
Q Consensus 325 ~~l~~~~ls~~y~-~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------a~~G~~vP~~~~~-- 390 (835)
.|++++||+++|+ ++++ ++||++.+| ++++|+||||||||||||+| |++.+. ...-.|+|+....
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~G-e~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPG-AKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 4899999999997 6555 999999999 99999999999999999999 565331 0112356665421
Q ss_pred CchHHHHHH---------------------------------------------------------HHcCCcccccCCcc
Q 003258 391 RLPWFDLIL---------------------------------------------------------ADIGDHQSLEQNLS 413 (835)
Q Consensus 391 ~i~~~d~i~---------------------------------------------------------~~ig~~~~~~~~ls 413 (835)
.+++.+++. ..+|+. ..+++++
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~ 160 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDADVT 160 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccCchh
Confidence 223333221 112222 2477899
Q ss_pred cchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCce
Q 003258 414 TFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAAT 491 (835)
Q Consensus 414 tfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v 491 (835)
+|||||+ |++++++++.+|+++||||||+|||+.....|...+.++ ++++|++||+.+ +..+|++++.+.+|.+
T Consensus 161 ~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~~~~~~~d~v~~l~~g~i 236 (552)
T TIGR03719 161 KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRYFLDNVAGWILELDRGRG 236 (552)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEEEECCEE
Confidence 9999999 899999999999999999999999999999888844332 469999999987 6678999999999876
Q ss_pred ee
Q 003258 492 EF 493 (835)
Q Consensus 492 ~~ 493 (835)
..
T Consensus 237 ~~ 238 (552)
T TIGR03719 237 IP 238 (552)
T ss_pred EE
Confidence 53
No 287
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.5e-22 Score=214.89 Aligned_cols=167 Identities=20% Similarity=0.226 Sum_probs=127.2
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh------hc-----------------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------MS----------------- 378 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------ma----------------- 378 (835)
++++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+ -+
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRN-KVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 47899999999987655 999999999 99999999999999999999 66431 00
Q ss_pred ---ccceeecCCCCC-CchHHH----------------------HHHHHcCC----cccccCCcccchHHHH-HHHHHHH
Q 003258 379 ---KAGLYLPAKNHP-RLPWFD----------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDILE 427 (835)
Q Consensus 379 ---~~G~~vP~~~~~-~i~~~d----------------------~i~~~ig~----~~~~~~~lstfSgg~~-rl~~~~~ 427 (835)
..-.++|+.... ..+..+ +++..+|+ .+..++.+.+||+||+ |++++++
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 164 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA 164 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 011244544310 112222 22333444 2346778899999999 8999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccccc-----CCceeec
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE-----NAATEFS 494 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~-----n~~v~~~ 494 (835)
++.+|+++||||||+|+|+.....+...+.+ +.+ +.|+|++||+.+ +..+|++.+.+. +|.+...
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 165 LAIKPKVLLMDEPCSALDPIATMKVEELIHS-LRS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHH-Hhc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 9999999999999999999999999995554 555 589999999987 677999998886 4776543
No 288
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.88 E-value=3.7e-22 Score=215.16 Aligned_cols=165 Identities=17% Similarity=0.159 Sum_probs=128.8
Q ss_pred eEEEeeeeeecC--Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh------------------hcccce
Q 003258 326 EMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGL 382 (835)
Q Consensus 326 ~l~~~~ls~~y~--~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------------------ma~~G~ 382 (835)
.|+++|+++.|. +..+ ++||+|.+| ++++|+||||+||||||++| |++.. +.+...
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~G-e~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPG-QRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEE
Confidence 478999999994 3444 999999999 99999999999999999999 66421 112234
Q ss_pred eecCCCCCCc--hH--------------HHHHHHHcCCcccccCCccc-----------chHHHH-HHHHHHHHcCCCcE
Q 003258 383 YLPAKNHPRL--PW--------------FDLILADIGDHQSLEQNLST-----------FSGHIS-RIVDILELVSRESL 434 (835)
Q Consensus 383 ~vP~~~~~~i--~~--------------~d~i~~~ig~~~~~~~~lst-----------fSgg~~-rl~~~~~la~~~~L 434 (835)
++|+... .+ ++ +.+.+..+|+...+++.+.. ||+||+ |++++++++.+|++
T Consensus 81 ~v~q~~~-lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 81 VIPQKVF-IFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EECCCcc-cchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 6676652 11 11 22335566766666665654 999999 89999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+||||||+|+|+.....+...+.+ +. .++|+|++||+++....|++++.+.+|.+...
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~-~~-~~~tii~isH~~~~i~~~dri~vl~~G~i~~~ 217 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQ-AF-ADCTVILSEHRIEAMLECQRFLVIEENKVRQY 217 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHH-hc-CCCEEEEEECCHHHHHhCCEEEEecCCeEeec
Confidence 999999999999999999985554 43 37899999999986667999999999988754
No 289
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.9e-22 Score=218.45 Aligned_cols=169 Identities=18% Similarity=0.216 Sum_probs=128.2
Q ss_pred CCCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh----------------h------
Q 003258 323 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M------ 377 (835)
Q Consensus 323 g~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~----------------m------ 377 (835)
+..||.++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+... .
T Consensus 42 ~~~~l~i~nl~~~~~~~~iL~~is~~i~~G-e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 42 GDAKLSVEDLDVYYGDDHALKGVSMDIPEK-SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CCceEEEEEEEEEeCCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 3468999999999987655 999999999 99999999999999999999 66531 0
Q ss_pred ----cccceeecCCCCC-CchHHHHH----------------------------------HHHcCCc----ccccCCccc
Q 003258 378 ----SKAGLYLPAKNHP-RLPWFDLI----------------------------------LADIGDH----QSLEQNLST 414 (835)
Q Consensus 378 ----a~~G~~vP~~~~~-~i~~~d~i----------------------------------~~~ig~~----~~~~~~lst 414 (835)
.+...|+|+.... ..++++++ +..+++. ...++.+.+
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 200 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALG 200 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcccc
Confidence 0112355655310 01222222 2233332 244678899
Q ss_pred chHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccc-ccccCCce
Q 003258 415 FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKD-TRFENAAT 491 (835)
Q Consensus 415 fSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~-~~~~n~~v 491 (835)
|||||+ |++++++++.+|+||||||||+|||+.....+.. ++..+.+ +.++|++||+.+ +..+|+++ +.+.+|.+
T Consensus 201 LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~-~L~~~~~-~~tiiivtH~~~~i~~~~d~i~~~l~~G~i 278 (305)
T PRK14264 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIED-LIEELAE-EYTVVVVTHNMQQAARISDQTAVFLTGGEL 278 (305)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEecCCEE
Confidence 999999 8999999999999999999999999999999988 4555555 489999999987 56789986 45688887
Q ss_pred eec
Q 003258 492 EFS 494 (835)
Q Consensus 492 ~~~ 494 (835)
..+
T Consensus 279 ~~~ 281 (305)
T PRK14264 279 VEY 281 (305)
T ss_pred EEe
Confidence 654
No 290
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.6e-22 Score=241.51 Aligned_cols=168 Identities=14% Similarity=0.175 Sum_probs=133.4
Q ss_pred CCeEEEeeeeeecCC----cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc-----------
Q 003258 324 NSEMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS----------- 378 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~----~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma----------- 378 (835)
..||+++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+ ..
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~G-e~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRG-ETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 458999999999963 233 999999999 99999999999999999999 55432 00
Q ss_pred ---------------ccceeecCCC----CCCchHH----------------------HHHHHHcCCcc---cccCCccc
Q 003258 379 ---------------KAGLYLPAKN----HPRLPWF----------------------DLILADIGDHQ---SLEQNLST 414 (835)
Q Consensus 379 ---------------~~G~~vP~~~----~~~i~~~----------------------d~i~~~ig~~~---~~~~~lst 414 (835)
+.-.++|+.. ...+++. .+++..+|+.+ .+++++++
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~ 168 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence 0113566653 1112221 23456677743 47899999
Q ss_pred chHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCce
Q 003258 415 FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAAT 491 (835)
Q Consensus 415 fSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v 491 (835)
|||||+ |+++|++++.+|+||||||||+|||+.....+.+ ++..+.+ .|.|+|++|||.+ +..+|++++.+.+|.+
T Consensus 169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~-ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i 247 (623)
T PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ-LIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 247 (623)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCee
Confidence 999999 8999999999999999999999999999999999 6666764 4899999999987 6789999999999988
Q ss_pred ee
Q 003258 492 EF 493 (835)
Q Consensus 492 ~~ 493 (835)
..
T Consensus 248 ~~ 249 (623)
T PRK10261 248 VE 249 (623)
T ss_pred cc
Confidence 64
No 291
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4.8e-22 Score=213.43 Aligned_cols=168 Identities=17% Similarity=0.209 Sum_probs=129.2
Q ss_pred CCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----------------------
Q 003258 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------- 377 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m----------------------- 377 (835)
.++|.++|+++.|+++.+ ++||++.+| ++++|+|||||||||||++| |+..+.
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINMMVHEK-QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 468999999999987665 999999999 99999999999999999999 665310
Q ss_pred -----cccceeecCCCCC-CchHHHH----------------------HHHHcCC----cccccCCcccchHHHH-HHHH
Q 003258 378 -----SKAGLYLPAKNHP-RLPWFDL----------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVD 424 (835)
Q Consensus 378 -----a~~G~~vP~~~~~-~i~~~d~----------------------i~~~ig~----~~~~~~~lstfSgg~~-rl~~ 424 (835)
.+.-.|+|+.... ..++.++ ++..++. .+..++...+||+||+ |+++
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 172 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCI 172 (265)
T ss_pred CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHH
Confidence 0111355654310 0111111 2223333 2345678899999999 8999
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 425 ~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+++++.+|+++||||||+|+|+.....+.. ++..+.. +.|+|++||+.+ +..+|++++.+.+|.+..+
T Consensus 173 aral~~~p~llllDEPt~gLD~~~~~~l~~-~l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 173 ARALATDPEILLFDEPTSALDPIATASIEE-LISDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEF 241 (265)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999998 4455555 689999999987 5579999999999987644
No 292
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.5e-22 Score=198.65 Aligned_cols=144 Identities=22% Similarity=0.349 Sum_probs=111.7
Q ss_pred EeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchH-------HHHHH
Q 003258 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW-------FDLIL 399 (835)
Q Consensus 329 ~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~-------~d~i~ 399 (835)
++|+++.|.+..+ ++|+++.+| ++++|+||||+||||||++| +|...|..|...+.. ...+.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g-~~~~i~G~nGsGKStll~~l--------~g~~~~~~G~i~~~~~~~~~~~~~~~~ 72 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAG-EIVALVGPNGSGKSTLLRAI--------AGLLKPTSGEILIDGKDIAKLPLEELR 72 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCccEEEECCEEcccCCHHHHH
Confidence 5688899976555 999999999 99999999999999999999 777777666332221 01111
Q ss_pred HHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HH
Q 003258 400 ADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LS 477 (835)
Q Consensus 400 ~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~ 477 (835)
..++. +..||+||+ |+.++++++.+|+++||||||+|+|+.....+...+.+ +.+.+.++|++||+.+ +.
T Consensus 73 ~~i~~-------~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~-~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 73 RRIGY-------VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE-LAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred hceEE-------EeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH-HHHCCCEEEEEeCCHHHHH
Confidence 11111 112999999 78999999999999999999999999999999995554 4444789999999987 55
Q ss_pred hhhcccccccCC
Q 003258 478 CLKDKDTRFENA 489 (835)
Q Consensus 478 ~~~~~~~~~~n~ 489 (835)
.+|++.+.+.++
T Consensus 145 ~~~d~i~~l~~g 156 (157)
T cd00267 145 LAADRVIVLKDG 156 (157)
T ss_pred HhCCEEEEEeCc
Confidence 567888877664
No 293
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=6e-22 Score=210.69 Aligned_cols=166 Identities=21% Similarity=0.261 Sum_probs=126.6
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh----------------h---------
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M--------- 377 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~----------------m--------- 377 (835)
++.++||++.|+++.+ ++||++.+| ++++|+||||+||||||++| |+... .
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKN-SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 5789999999987655 999999999 99999999999999999999 65420 0
Q ss_pred -cccceeecCCCCC-CchHHHH----------------------HHHHcCCc----ccccCCcccchHHHH-HHHHHHHH
Q 003258 378 -SKAGLYLPAKNHP-RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 428 (835)
Q Consensus 378 -a~~G~~vP~~~~~-~i~~~d~----------------------i~~~ig~~----~~~~~~lstfSgg~~-rl~~~~~l 428 (835)
.+...|+|+.... ..+..++ ++..+|+. ...++....||+||+ |+++++++
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 0112355555311 0111121 22333432 234678899999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 429 a~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+.+|+++||||||+|+|+.....+...+. .+.+ +.|+|++||+.+ +..+++++..+.+|++..+
T Consensus 162 ~~~p~llllDEP~~gLD~~~~~~l~~~l~-~~~~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~ 226 (250)
T PRK14266 162 AVSPEVILMDEPCSALDPISTTKIEDLIH-KLKE-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIES 226 (250)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEe
Confidence 99999999999999999999999988554 4554 789999999987 6778888888899988654
No 294
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.4e-22 Score=198.84 Aligned_cols=154 Identities=21% Similarity=0.323 Sum_probs=131.5
Q ss_pred eEEEeeeeeecCCce--e--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC------------
Q 003258 326 EMTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------------ 389 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~--v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~------------ 389 (835)
|+.+++++.+|.+++ + ++|+++.+| +.++++||+||||||||+++ +|+..|+.|.
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~g-e~vv~lGpSGcGKTTLLnl~--------AGf~~P~~G~i~l~~r~i~gPg 73 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASG-ELVVVLGPSGCGKTTLLNLI--------AGFVTPSRGSIQLNGRRIEGPG 73 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCC-CEEEEEcCCCccHHHHHHHH--------hcCcCcccceEEECCEeccCCC
Confidence 567889999998877 3 999999999 99999999999999999999 5655555542
Q ss_pred ----------CCchH------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcE
Q 003258 390 ----------PRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (835)
Q Consensus 390 ----------~~i~~------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~L 434 (835)
.-+|| .++++..+|+++.-++.+-.|||||+ |+-++++++.+|.+
T Consensus 74 aergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~ 153 (259)
T COG4525 74 AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQL 153 (259)
T ss_pred ccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcce
Confidence 22333 33557888999999999999999999 89999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhcccccccC
Q 003258 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRFEN 488 (835)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~-~~~~~~~~~n 488 (835)
+|||||+..+|.-.++.+-..+++.+...|..++++||+.+.+- ++++.+.+..
T Consensus 154 LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp 208 (259)
T COG4525 154 LLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSP 208 (259)
T ss_pred EeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecC
Confidence 99999999999999999999999999999999999999987554 6677666654
No 295
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.2e-22 Score=234.34 Aligned_cols=166 Identities=12% Similarity=0.151 Sum_probs=129.9
Q ss_pred CeEEEeeeeeecCCcee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc-------------ccce
Q 003258 325 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS-------------KAGL 382 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma-------------~~G~ 382 (835)
.+|+++|+++.|. ..+ ++||++.+| ++++|+||||||||||||+| |+..+ .. +.-.
T Consensus 249 ~~i~~~~l~~~~~-~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 326 (491)
T PRK10982 249 VILEVRNLTSLRQ-PSIRDVSFDLHKG-EILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA 326 (491)
T ss_pred cEEEEeCcccccC-cccceeeEEEeCC-cEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence 4788999998852 234 999999999 99999999999999999999 55432 10 0022
Q ss_pred eecCCCC-----CCchH---------------------------HHHHHHHcCCc-ccccCCcccchHHHH-HHHHHHHH
Q 003258 383 YLPAKNH-----PRLPW---------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILEL 428 (835)
Q Consensus 383 ~vP~~~~-----~~i~~---------------------------~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~~~l 428 (835)
|+|+... ..+.+ +..++..+++. +..++++++|||||+ |+.+++++
T Consensus 327 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al 406 (491)
T PRK10982 327 LVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWL 406 (491)
T ss_pred EcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHH
Confidence 4554310 00110 12345556664 467999999999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 429 a~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
+.+|++|||||||+|+|+.....+.. ++..+.+.+.|+|++|||.+ +..+|++++.+.+|.+..
T Consensus 407 ~~~p~illLDEPt~gLD~~~~~~~~~-~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 407 LTQPEILMLDEPTRGIDVGAKFEIYQ-LIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAG 471 (491)
T ss_pred hcCCCEEEEcCCCcccChhHHHHHHH-HHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999 55667777899999999987 667999999999998764
No 296
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.87 E-value=5.3e-22 Score=221.27 Aligned_cols=162 Identities=24% Similarity=0.279 Sum_probs=133.7
Q ss_pred CCCeEEEeeeeeecCCce-e--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC------CCch
Q 003258 323 ENSEMTVGSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------PRLP 393 (835)
Q Consensus 323 g~~~l~~~~ls~~y~~~~-v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~------~~i~ 393 (835)
|.+.+.+.|++|+|.+.+ + +++|-++.+ ..++++||||+|||||||++ +|...|..|. ..++
T Consensus 386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~-srvAlVGPNG~GKsTLlKl~--------~gdl~p~~G~vs~~~H~~~~ 456 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLD-SRVALVGPNGAGKSTLLKLI--------TGDLQPTIGMVSRHSHNKLP 456 (614)
T ss_pred CCCeEEEeccccCCCCcchhhhhhhcccCcc-cceeEecCCCCchhhhHHHH--------hhccccccccccccccccch
Confidence 346788999999998764 3 889999999 88999999999999999999 4444444431 2222
Q ss_pred -------------------------------HHHHHHHHcCCc-ccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCC
Q 003258 394 -------------------------------WFDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 440 (835)
Q Consensus 394 -------------------------------~~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp 440 (835)
.+..++.++|+. +....++++||+||+ |+.++..+...|.|||||||
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEP 536 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEP 536 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCC
Confidence 134567778877 677889999999999 89999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeecccc
Q 003258 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLET 497 (835)
Q Consensus 441 ~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~~~~ 497 (835)
|+|||+....++++||-++ .+++|++|||.. +..++++++.+.|+.+....+.
T Consensus 537 tnhLDi~tid~laeaiNe~----~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 537 TNHLDIETIDALAEAINEF----PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred CcCCCchhHHHHHHHHhcc----CCceeeeechhhHHHHHHHHhHhhccCceeecCcc
Confidence 9999999999999977766 899999999987 7789999999999987765443
No 297
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.87 E-value=2.8e-22 Score=213.01 Aligned_cols=143 Identities=22% Similarity=0.207 Sum_probs=109.6
Q ss_pred eeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------cccceeecCCCCC--CchH-----------------HHH
Q 003258 345 IKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKAGLYLPAKNHP--RLPW-----------------FDL 397 (835)
Q Consensus 345 l~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a~~G~~vP~~~~~--~i~~-----------------~d~ 397 (835)
+++.+| ++++|+||||||||||||+| |++.+- ...-.++|+.... ..++ ..+
T Consensus 20 ~~i~~G-e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 98 (246)
T cd03237 20 GSISES-EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTE 98 (246)
T ss_pred CCcCCC-CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHH
Confidence 345578 99999999999999999999 554321 1112355554311 1111 233
Q ss_pred HHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-
Q 003258 398 ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD- 475 (835)
Q Consensus 398 i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e- 475 (835)
++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||++||+..+..+...+.+...+.+.++|++||+.+
T Consensus 99 ~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~ 178 (246)
T cd03237 99 IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIM 178 (246)
T ss_pred HHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 55667777778899999999999 8999999999999999999999999999999999555544455889999999987
Q ss_pred HHhhhcccccccC
Q 003258 476 LSCLKDKDTRFEN 488 (835)
Q Consensus 476 l~~~~~~~~~~~n 488 (835)
+..+|++++.+.+
T Consensus 179 ~~~~~d~i~~l~~ 191 (246)
T cd03237 179 IDYLADRLIVFEG 191 (246)
T ss_pred HHHhCCEEEEEcC
Confidence 5568998887754
No 298
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.87 E-value=3.1e-22 Score=210.39 Aligned_cols=152 Identities=14% Similarity=0.168 Sum_probs=117.9
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh----h-c----------------ccceeecCCCC----CCchH-
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----M-S----------------KAGLYLPAKNH----PRLPW- 394 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~----m-a----------------~~G~~vP~~~~----~~i~~- 394 (835)
++||++.+| ++++|+||||+|||||||+| |++.+ - + +.-.++|++.. ..+..
T Consensus 4 ~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~ 82 (230)
T TIGR02770 4 DLNLSLKRG-EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMG 82 (230)
T ss_pred ceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHH
Confidence 678999999 99999999999999999999 77653 1 0 11235555531 11111
Q ss_pred --------------------HHHHHHHcCCc---ccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHH
Q 003258 395 --------------------FDLILADIGDH---QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 450 (835)
Q Consensus 395 --------------------~d~i~~~ig~~---~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~ 450 (835)
+.+++..+|+. ...++.+++||+||+ |++++++++.+|+++||||||+|+|+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~ 162 (230)
T TIGR02770 83 NHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQA 162 (230)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHH
Confidence 12335555665 456889999999999 899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 451 ALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 451 aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
.+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 163 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 207 (230)
T TIGR02770 163 RVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVER 207 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999555443335889999999987 5679999999999988643
No 299
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.87 E-value=3.3e-22 Score=233.80 Aligned_cols=164 Identities=18% Similarity=0.237 Sum_probs=130.3
Q ss_pred CCeEEEeeeeeecCCcee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc-------------ccc
Q 003258 324 NSEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS-------------KAG 381 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma-------------~~G 381 (835)
..|++++|+++. .+ ++||++.+| ++++|+||||||||||||+| |++.+ .. ..-
T Consensus 266 ~~~l~~~~l~~~----~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 266 APVLTVEDLTGE----GFRNISLEVRAG-EILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred CceEEEeCCCCC----CccceeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 357889999852 34 899999999 99999999999999999999 66432 11 112
Q ss_pred eeecCCC-----CCCchH------------------------HHHHHHHcCCc-ccccCCcccchHHHH-HHHHHHHHcC
Q 003258 382 LYLPAKN-----HPRLPW------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVS 430 (835)
Q Consensus 382 ~~vP~~~-----~~~i~~------------------------~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~~~la~ 430 (835)
.|+|+.. ...+++ +++++..+|+. ...++++++|||||+ |+.++++++.
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~ 420 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEA 420 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhh
Confidence 4666541 000111 23456677886 678999999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
+|+||||||||+|||+.....+.. ++..+.+.|.++|++|||.+ +..+|++++.+.+|++..
T Consensus 421 ~p~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~ 483 (510)
T PRK15439 421 SPQLLIVDEPTRGVDVSARNDIYQ-LIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISG 483 (510)
T ss_pred CCCEEEECCCCcCcChhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999 55556666899999999987 667999999999998764
No 300
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.87 E-value=3.7e-22 Score=256.84 Aligned_cols=169 Identities=21% Similarity=0.244 Sum_probs=137.5
Q ss_pred CCeEEEeeeeeecCC--ce-e-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc-----------cc
Q 003258 324 NSEMTVGSLSKGISD--FP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS-----------KA 380 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~--~~-v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma-----------~~ 380 (835)
..+++++||+|.|++ +. + ++||.+.+| ++++|+||||||||||||+| |++.+ .+ +.
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~G-Ei~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPG-ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCC-cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhh
Confidence 458999999999985 33 3 999999999 99999999999999999999 55432 10 11
Q ss_pred ceeecCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEE
Q 003258 381 GLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (835)
Q Consensus 381 G~~vP~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlL 436 (835)
-.|+|+.... .++. ++.++..+|+.+..++.+++|||||+ |+++|++++.+|++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLL 2093 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVL 2093 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2366765311 1111 22346677888888999999999999 7999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|||||+|+||..+..+.. ++..+.+.|.+||+|||+++ ...+|+++..+.+|++...
T Consensus 2094 LDEPTsGLDp~sr~~l~~-lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~ 2151 (2272)
T TIGR01257 2094 LDEPTTGMDPQARRMLWN-TIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCL 2151 (2272)
T ss_pred EECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999 55666666899999999987 6679999999999988754
No 301
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.87 E-value=8.9e-22 Score=222.87 Aligned_cols=159 Identities=19% Similarity=0.235 Sum_probs=136.4
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC-------------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------------- 389 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~------------- 389 (835)
..++++|++|+|++..+ ++||++.+| ++++|+|.||+|||||+|+| +|.|.|.+|.
T Consensus 7 ~ll~~~~i~K~FggV~AL~~v~l~v~~G-EV~aL~GeNGAGKSTLmKiL--------sGv~~p~~G~I~~~G~~~~~~sp 77 (500)
T COG1129 7 PLLELRGISKSFGGVKALDGVSLTVRPG-EVHALLGENGAGKSTLMKIL--------SGVYPPDSGEILIDGKPVAFSSP 77 (500)
T ss_pred ceeeeecceEEcCCceeeccceeEEeCc-eEEEEecCCCCCHHHHHHHH--------hCcccCCCceEEECCEEccCCCH
Confidence 36789999999998665 999999999 99999999999999999999 7777777762
Q ss_pred ------------------CCchHH-------------------------HHHHHHcCCcccccCCcccchHHHHH-HHHH
Q 003258 390 ------------------PRLPWF-------------------------DLILADIGDHQSLEQNLSTFSGHISR-IVDI 425 (835)
Q Consensus 390 ------------------~~i~~~-------------------------d~i~~~ig~~~~~~~~lstfSgg~~r-l~~~ 425 (835)
..+++. .+++..+|.....+..+.+||.+++| +.+|
T Consensus 78 ~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 78 RDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred HHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHH
Confidence 111111 23466777755689999999999997 5666
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 426 ~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
++++.++.+|||||||+.|+..+...|.. ++..|+++|.++|++||.++ +..+||++..+.+|...-
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~-~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFD-LIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence 99999999999999999999999999999 88889999999999999975 889999999999997653
No 302
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.87 E-value=1e-21 Score=212.60 Aligned_cols=168 Identities=17% Similarity=0.098 Sum_probs=124.3
Q ss_pred CCCeEEEeeeeeecCCcee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------cccceeecCCCCC-Cc
Q 003258 323 ENSEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKAGLYLPAKNHP-RL 392 (835)
Q Consensus 323 g~~~l~~~~ls~~y~~~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a~~G~~vP~~~~~-~i 392 (835)
+...|+++|+++. +...+ ++||++.+| ++++|+|||||||||||++| |++.+. ... .|+|+.... ..
T Consensus 36 ~~~~l~i~nls~~-~~~vL~~vs~~i~~G-e~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i-~yv~q~~~l~~~ 112 (282)
T cd03291 36 DDNNLFFSNLCLV-GAPVLKNINLKIEKG-EMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRI-SFSSQFSWIMPG 112 (282)
T ss_pred CCCeEEEEEEEEe-cccceeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE-EEEeCccccccc
Confidence 3457899999986 33334 999999999 99999999999999999999 554332 111 245554310 01
Q ss_pred hHHHHH--------------HHHcCCcc-----------cccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCH
Q 003258 393 PWFDLI--------------LADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (835)
Q Consensus 393 ~~~d~i--------------~~~ig~~~-----------~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp 446 (835)
++.+++ +..+++.. .+....+.||+||+ |++++++++.+|+++||||||+|||+
T Consensus 113 tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~ 192 (282)
T cd03291 113 TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192 (282)
T ss_pred CHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 222221 22223222 12334579999999 89999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 447 SEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 447 ~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
.....+...++..+.+ +.++|++||+.+....|++++.+.+|.+.+.
T Consensus 193 ~~~~~l~~~ll~~~~~-~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 193 FTEKEIFESCVCKLMA-NKTRILVTSKMEHLKKADKILILHEGSSYFY 239 (282)
T ss_pred HHHHHHHHHHHHHhhC-CCEEEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence 9999888766666554 6899999999886678999999999987654
No 303
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6.4e-22 Score=231.00 Aligned_cols=164 Identities=16% Similarity=0.148 Sum_probs=127.1
Q ss_pred eEEEeeeeeecCCcee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc-------------cccee
Q 003258 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS-------------KAGLY 383 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma-------------~~G~~ 383 (835)
.+.++|+++. ..+ ++||++.+| ++++|+||||||||||||+| |++.+ .. +.-.|
T Consensus 257 ~l~~~~~~~~---~~l~~isl~i~~G-e~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 332 (501)
T PRK11288 257 RLRLDGLKGP---GLREPISFSVRAG-EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIML 332 (501)
T ss_pred EEEEeccccC---CcccceeEEEeCC-cEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEE
Confidence 4556677632 234 999999999 99999999999999999999 66432 11 01124
Q ss_pred ecCCCC-----CCchH---------------------------HHHHHHHcCCc-ccccCCcccchHHHH-HHHHHHHHc
Q 003258 384 LPAKNH-----PRLPW---------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 429 (835)
Q Consensus 384 vP~~~~-----~~i~~---------------------------~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~~~la 429 (835)
+|+... ..++. +..++..+|+. +..++++.+|||||+ |+.++++++
T Consensus 333 ~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~ 412 (501)
T PRK11288 333 CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLS 412 (501)
T ss_pred cCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHc
Confidence 555420 00111 22455667773 678999999999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
.+|+||||||||+|||+.....+.. ++..+.+.|.++|++|||.+ +..+|++.+.+.+|.+.+.
T Consensus 413 ~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~ 477 (501)
T PRK11288 413 EDMKVILLDEPTRGIDVGAKHEIYN-VIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGE 477 (501)
T ss_pred cCCCEEEEcCCCCCCCHhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999 55556777899999999987 6689999999999987653
No 304
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.87 E-value=7.3e-22 Score=210.78 Aligned_cols=155 Identities=20% Similarity=0.233 Sum_probs=118.0
Q ss_pred eeeeeecCCce-e--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhc-cc--------------c---------
Q 003258 330 GSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-KA--------------G--------- 381 (835)
Q Consensus 330 ~~ls~~y~~~~-v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma-~~--------------G--------- 381 (835)
.+|+++|++.. + ++++ +.+| ++++|+||||||||||||+| |+..+-. +. |
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~G-e~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREG-QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCC-CEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 47899997643 3 8884 8899 99999999999999999999 4432110 00 0
Q ss_pred --------eeecCCCCCCch------------------HHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcE
Q 003258 382 --------LYLPAKNHPRLP------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (835)
Q Consensus 382 --------~~vP~~~~~~i~------------------~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~L 434 (835)
.++|+.. ..++ .+.+++..+|+.+..++.+.+||+||+ |+.++++++.+|++
T Consensus 82 ~~~~~~~i~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~i 160 (255)
T cd03236 82 LLEGDVKVIVKPQYV-DLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADF 160 (255)
T ss_pred hhhcccceeeecchh-ccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 1122211 0010 133456777888788899999999999 79999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccC
Q 003258 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (835)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n 488 (835)
+||||||+|+|+.....+.+ ++..+.+.++++|++||+.+ +..+|+++..+.+
T Consensus 161 lllDEPts~LD~~~~~~l~~-~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~ 214 (255)
T cd03236 161 YFFDEPSSYLDIKQRLNAAR-LIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYG 214 (255)
T ss_pred EEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECC
Confidence 99999999999999999998 55666666899999999988 5558998877743
No 305
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.9e-21 Score=214.79 Aligned_cols=168 Identities=18% Similarity=0.245 Sum_probs=129.6
Q ss_pred CCeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh----------------------
Q 003258 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------- 376 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~---------------------- 376 (835)
.+++.++|+++.|.+ ..+ ++||++.+| ++++|+|||||||||||++| |+..+
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~G-e~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRN-KVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 468999999999953 334 999999999 99999999999999999999 66531
Q ss_pred ----hcccceeecCCCCC-CchHHHH----------------------HHHHcCC----cccccCCcccchHHHH-HHHH
Q 003258 377 ----MSKAGLYLPAKNHP-RLPWFDL----------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVD 424 (835)
Q Consensus 377 ----ma~~G~~vP~~~~~-~i~~~d~----------------------i~~~ig~----~~~~~~~lstfSgg~~-rl~~ 424 (835)
+.+.-.++|+.... ..++.++ ++..+++ ...++.+..+|||||+ |+++
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 01122356666421 1112222 2333443 2346788999999999 8999
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 425 ~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|++++.+|++|||||||+|+|+.....+.. ++..+.+ ++|+|++||+++ +..+|++++.+.+|.+...
T Consensus 237 ARAl~~~p~IlLLDEPts~LD~~~~~~i~~-~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 237 ARAIALEPEVLLMDEPTSALDPIATAKIEE-LILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999888 4455555 689999999988 5678999999999988643
No 306
>PLN03073 ABC transporter F family; Provisional
Probab=99.87 E-value=9.3e-22 Score=236.73 Aligned_cols=165 Identities=19% Similarity=0.151 Sum_probs=122.9
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh-hhcccc--eeecCCCC-CCchH---
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-LMSKAG--LYLPAKNH-PRLPW--- 394 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~-~ma~~G--~~vP~~~~-~~i~~--- 394 (835)
.+|.++|+++.|+++.+ ++||+|..| ++++|+||||||||||||+| |... .....| .++++... ..++.
T Consensus 176 ~~I~i~nls~~y~~~~ll~~isl~i~~G-e~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~ 254 (718)
T PLN03073 176 KDIHMENFSISVGGRDLIVDASVTLAFG-RHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC 254 (718)
T ss_pred eeEEEceEEEEeCCCEEEECCEEEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence 57999999999987766 999999999 99999999999999999999 4210 000001 12222100 00000
Q ss_pred ---------------------------------------------------------------------HHHHHHHcCCc
Q 003258 395 ---------------------------------------------------------------------FDLILADIGDH 405 (835)
Q Consensus 395 ---------------------------------------------------------------------~d~i~~~ig~~ 405 (835)
+..++..+|+.
T Consensus 255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~ 334 (718)
T PLN03073 255 VLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFT 334 (718)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCC
Confidence 01123333442
Q ss_pred -ccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcc
Q 003258 406 -QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDK 482 (835)
Q Consensus 406 -~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~ 482 (835)
...++++++|||||+ |++++++++.+|++|||||||+|||+.....|...+.+ .+.|+|++|||.+ +..+|++
T Consensus 335 ~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~----~~~tviivsHd~~~l~~~~d~ 410 (718)
T PLN03073 335 PEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK----WPKTFIVVSHAREFLNTVVTD 410 (718)
T ss_pred hHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH----cCCEEEEEECCHHHHHHhCCE
Confidence 335788999999999 89999999999999999999999999998888774433 3789999999987 6678999
Q ss_pred cccccCCceeec
Q 003258 483 DTRFENAATEFS 494 (835)
Q Consensus 483 ~~~~~n~~v~~~ 494 (835)
++.+.+|.+..+
T Consensus 411 i~~l~~g~i~~~ 422 (718)
T PLN03073 411 ILHLHGQKLVTY 422 (718)
T ss_pred EEEEECCEEEEe
Confidence 999999887543
No 307
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.87 E-value=4.9e-22 Score=197.92 Aligned_cols=128 Identities=34% Similarity=0.464 Sum_probs=106.6
Q ss_pred eccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcc----------cceeecCCCCCCchHHHHHHHHcCCcccccC
Q 003258 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSK----------AGLYLPAKNHPRLPWFDLILADIGDHQSLEQ 410 (835)
Q Consensus 341 v~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~----------~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~ 410 (835)
+++++.+.++ .+.+|||||||||||+|++++++..+++ .|+++|+.. ..+ ++..++
T Consensus 12 ~~~~i~~~~~-~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~-----i~~~~~------- 77 (162)
T cd03227 12 VPNDVTFGEG-SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVS-AEL-----IFTRLQ------- 77 (162)
T ss_pred eccEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeE-EEE-----ehheee-------
Confidence 5778888777 7999999999999999999999999998 888888775 333 333333
Q ss_pred CcccchHHHH-HHHHHHHHcC----CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccc
Q 003258 411 NLSTFSGHIS-RIVDILELVS----RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR 485 (835)
Q Consensus 411 ~lstfSgg~~-rl~~~~~la~----~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~ 485 (835)
+|+||+ ++.++++++. +|+++|||||++||||.++..+..++.+++.+ ++++|++||+.++...+++.+.
T Consensus 78 ----lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~~~d~~~~ 152 (162)
T cd03227 78 ----LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAELADKLIH 152 (162)
T ss_pred ----ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHhhhhEEE
Confidence 899998 5666666543 88999999999999999999999988888777 8899999999998888877655
Q ss_pred cc
Q 003258 486 FE 487 (835)
Q Consensus 486 ~~ 487 (835)
+.
T Consensus 153 l~ 154 (162)
T cd03227 153 IK 154 (162)
T ss_pred EE
Confidence 43
No 308
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=5.7e-22 Score=193.65 Aligned_cols=167 Identities=20% Similarity=0.271 Sum_probs=137.0
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhh--------h--------hcccceeecCC
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLAS--------L--------MSKAGLYLPAK 387 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~--------~--------ma~~G~~vP~~ 387 (835)
.+.++|+.|.||..-| .+|+.-..| +++.|+|.+||||||||+||.++- + ....|-.+|++
T Consensus 6 ~l~v~dlHK~~G~~eVLKGvSL~A~~G-dVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 6 ALEVEDLHKRYGEHEVLKGVSLQANAG-DVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred ceehhHHHhhcccchhhcceeeecCCC-CEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 5778999999998777 999999999 999999999999999999995432 1 22344555554
Q ss_pred CC-------------------CCchH----------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHH
Q 003258 388 NH-------------------PRLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDI 425 (835)
Q Consensus 388 ~~-------------------~~i~~----------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~ 425 (835)
.. +.+++ ...++..+|+.+..+.++..||||++ |++++
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA 164 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence 30 11111 12347788999999999999999998 89999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhcccccccCCceeec
Q 003258 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRFENAATEFS 494 (835)
Q Consensus 426 ~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~-~~~~~~~~~n~~v~~~ 494 (835)
++++.+|.++|+||||+.|||+--..+.. ++..|.+.|.|.+++||.+.+++ .+.+++.+.+|.++-.
T Consensus 165 RaLameP~vmLFDEPTSALDPElVgEVLk-v~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~ 233 (256)
T COG4598 165 RALAMEPEVMLFDEPTSALDPELVGEVLK-VMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEE 233 (256)
T ss_pred HHHhcCCceEeecCCcccCCHHHHHHHHH-HHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceeccc
Confidence 99999999999999999999999888888 88889999999999999998765 7778888888877643
No 309
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.86 E-value=8.3e-22 Score=230.04 Aligned_cols=164 Identities=15% Similarity=0.196 Sum_probs=128.9
Q ss_pred CeEEEeeeeeecCCcee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc-------------ccce
Q 003258 325 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS-------------KAGL 382 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma-------------~~G~ 382 (835)
.+++++|+++. .+ ++||++.+| ++++|+||||||||||||+| |++.+ .. +.-.
T Consensus 256 ~~l~~~~l~~~----~l~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 330 (501)
T PRK10762 256 VRLKVDNLSGP----GVNDVSFTLRKG-EILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV 330 (501)
T ss_pred cEEEEeCcccC----CcccceEEEcCC-cEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE
Confidence 35677888752 34 899999999 99999999999999999999 56432 11 1124
Q ss_pred eecCCCC-----CCchH---------------------------HHHHHHHcCCc-ccccCCcccchHHHH-HHHHHHHH
Q 003258 383 YLPAKNH-----PRLPW---------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILEL 428 (835)
Q Consensus 383 ~vP~~~~-----~~i~~---------------------------~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~~~l 428 (835)
|+|+... ..+.+ +++++..+|+. ...++++.+|||||+ |+.+|+++
T Consensus 331 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al 410 (501)
T PRK10762 331 YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGL 410 (501)
T ss_pred EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 6666521 00111 23456667874 568999999999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 429 a~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+.+|+++||||||+|||+.....+.. ++..+.+.|.|+|++|||.+ +..+|++++.+.+|.+...
T Consensus 411 ~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 476 (501)
T PRK10762 411 MTRPKVLILDEPTRGVDVGAKKEIYQ-LINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGE 476 (501)
T ss_pred hhCCCEEEEcCCCCCCCHhHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999 55556666899999999987 6789999999999987643
No 310
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.6e-21 Score=209.07 Aligned_cols=166 Identities=16% Similarity=0.161 Sum_probs=126.2
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh------h------------------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M------------------ 377 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------m------------------ 377 (835)
..+.++++++.|++..+ ++||++.+| ++++|+||||+|||||||+| |++.+ -
T Consensus 7 ~~~~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 7 IVMDCKLDKIFYGNFMAVRDSHVPIRKN-EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred ceEEEEeEEEEeCCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 35678899999988655 999999999 99999999999999999999 66532 0
Q ss_pred --cccceeecCCCCC-CchHHH--------------------HHHHHcCCcc----cccCCcccchHHHH-HHHHHHHHc
Q 003258 378 --SKAGLYLPAKNHP-RLPWFD--------------------LILADIGDHQ----SLEQNLSTFSGHIS-RIVDILELV 429 (835)
Q Consensus 378 --a~~G~~vP~~~~~-~i~~~d--------------------~i~~~ig~~~----~~~~~lstfSgg~~-rl~~~~~la 429 (835)
.+...|+|+.... .+..++ .++..+++.. ..++....||+||+ |++++++++
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~ 165 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIA 165 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 0112355555311 122222 2344445432 33567789999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccccc--------CCceee
Q 003258 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE--------NAATEF 493 (835)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~--------n~~v~~ 493 (835)
.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+. +|.+..
T Consensus 166 ~~p~llllDEPtsgLD~~~~~~l~~~l-~~~~~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~ 236 (261)
T PRK14263 166 TEPEVLLLDEPCSALDPIATRRVEELM-VELKK-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE 236 (261)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhc-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE
Confidence 999999999999999999999999955 45554 689999999987 678999998885 666654
No 311
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.86 E-value=1.2e-21 Score=190.23 Aligned_cols=167 Identities=23% Similarity=0.317 Sum_probs=132.0
Q ss_pred eEEEeeeeeecCC----cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhh-------hh---------------
Q 003258 326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA-------SL--------------- 376 (835)
Q Consensus 326 ~l~~~~ls~~y~~----~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli-------~~--------------- 376 (835)
+|+++++++..+. -.| ++++.+.+| +.++|+||+||||||||-.+ ||- .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~G-e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRG-ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCC-ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 3455566555432 123 899999999 99999999999999999998 332 11
Q ss_pred -hcccceeecCCCC----------CCch-------------HHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCC
Q 003258 377 -MSKAGLYLPAKNH----------PRLP-------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 377 -ma~~G~~vP~~~~----------~~i~-------------~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~ 431 (835)
.+..-.||+++.. +.+| .....+..+|+.+.+..++.+||||++ |++++++++..
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~ 164 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGR 164 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCC
Confidence 1112224444431 1111 123568899999999999999999988 89999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
|.+++.||||.+||...+..+++.+...-.+.|.|.+++|||..+..-|++.+.+.+|.++-
T Consensus 165 P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 165 PDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred CCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 99999999999999999999999777766788999999999999999999999999998753
No 312
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.86 E-value=1.5e-21 Score=203.00 Aligned_cols=148 Identities=16% Similarity=0.127 Sum_probs=111.0
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhccccee-------ecCC--C--CCCchHHHHH-----------
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLY-------LPAK--N--HPRLPWFDLI----------- 398 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma~~G~~-------vP~~--~--~~~i~~~d~i----------- 398 (835)
++||++++| ++++|+||||||||||||+| |++.+- .|.. ++.. . ...+++.+++
T Consensus 5 ~vs~~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~~~--sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 5 KTDFVMGYH-EHIGILAAPGSGKTTLTRLLCGLDAPD--EGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCccCC--CCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 789999999 99999999999999999999 443221 1110 0100 0 0111222222
Q ss_pred -------HHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEE
Q 003258 399 -------LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT 470 (835)
Q Consensus 399 -------~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viit 470 (835)
+..+++....++.++.||+||+ |++++++++.+|+++|||||++++|+.....+...+.+.+.+ .++|++
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~--~~ii~v 159 (213)
T PRK15177 82 DEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQ--KGLIVL 159 (213)
T ss_pred HHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhC--CcEEEE
Confidence 1223344456788999999999 899999999999999999999999999999988866666543 579999
Q ss_pred ecchh-HHhhhcccccccCCceeec
Q 003258 471 THYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 471 TH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||+++ +..+|++.+.+.+|++.+.
T Consensus 160 sH~~~~~~~~~d~i~~l~~G~i~~~ 184 (213)
T PRK15177 160 THNPRLIKEHCHAFGVLLHGKITMC 184 (213)
T ss_pred ECCHHHHHHhcCeeEEEECCeEEEe
Confidence 99987 5579999999999988764
No 313
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.86 E-value=2.4e-21 Score=220.74 Aligned_cols=169 Identities=17% Similarity=0.161 Sum_probs=137.1
Q ss_pred CeEEEeeeeeecCCc-----ee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------------
Q 003258 325 SEMTVGSLSKGISDF-----PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 377 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~-----~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------- 377 (835)
.+++++||++.|... .| ++||++.+| ++++|+|.+||||||+.++| |++..-
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~G-E~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPG-EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCC-cEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 378999999999542 34 999999999 99999999999999999998 665431
Q ss_pred -------cccceeecCCCCCCchH--------------------------HHHHHHHcCCcccccC--CcccchHHHH-H
Q 003258 378 -------SKAGLYLPAKNHPRLPW--------------------------FDLILADIGDHQSLEQ--NLSTFSGHIS-R 421 (835)
Q Consensus 378 -------a~~G~~vP~~~~~~i~~--------------------------~d~i~~~ig~~~~~~~--~lstfSgg~~-r 421 (835)
+..-.++||+....+.. ..++|..+|+.+.... ++..|||||+ |
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQR 162 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQR 162 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHH
Confidence 12234667765322221 2245778888776655 9999999999 8
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 422 l~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+.+|++++.+|+|||+||||++||+.....|.+++.+...+.|.++|++|||++ +..+||++..+.+|.+...
T Consensus 163 v~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~ 236 (539)
T COG1123 163 VMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET 236 (539)
T ss_pred HHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe
Confidence 999999999999999999999999999999999555555577999999999999 6779999999999987654
No 314
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.86 E-value=1.5e-21 Score=251.24 Aligned_cols=168 Identities=23% Similarity=0.302 Sum_probs=136.0
Q ss_pred CCeEEEeeeeeecC--Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------------------ccc
Q 003258 324 NSEMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKA 380 (835)
Q Consensus 324 ~~~l~~~~ls~~y~--~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------------------a~~ 380 (835)
...++++||++.|+ ++.+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~G-ei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~ 1004 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYEN-QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQS 1004 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCC-cEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhc
Confidence 34799999999995 3444 999999999 99999999999999999999 665321 111
Q ss_pred ceeecCCCC--CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEE
Q 003258 381 GLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (835)
Q Consensus 381 G~~vP~~~~--~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlL 436 (835)
-.++|+... ..+++ +++++..+|+.+..++.+++|||||+ |+++|++++.+|++||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLL 1084 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 235666541 11111 23457778888888999999999999 8999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|||||+|+||..+..+.. ++..+. .|.+||+|||+++ ...+||++..+.+|.+...
T Consensus 1085 LDEPTSGLDp~sr~~l~~-lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~ 1141 (2272)
T TIGR01257 1085 LDEPTSGVDPYSRRSIWD-LLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCS 1141 (2272)
T ss_pred EECCCcCCCHHHHHHHHH-HHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999 555555 4889999999987 5569999999999987654
No 315
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.2e-21 Score=195.32 Aligned_cols=168 Identities=23% Similarity=0.269 Sum_probs=134.4
Q ss_pred CeEEEeeeeeecCCc-ee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh---------------------hcc
Q 003258 325 SEMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSK 379 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~-~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~---------------------ma~ 379 (835)
.|++++||+.+-.++ .+ ++|+++..| ++.+|+||||||||||.++| |.-.| .|+
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~G-EvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEG-EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCC-cEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 378999999999874 66 999999999 99999999999999999999 33221 367
Q ss_pred cceeecCCCCCCchH---------------------------HHHHHHHcCCcc-cccCCcc-cchHHHH-HHHHHHHHc
Q 003258 380 AGLYLPAKNHPRLPW---------------------------FDLILADIGDHQ-SLEQNLS-TFSGHIS-RIVDILELV 429 (835)
Q Consensus 380 ~G~~vP~~~~~~i~~---------------------------~d~i~~~ig~~~-~~~~~ls-tfSgg~~-rl~~~~~la 429 (835)
.|+|+..+.++.++. +...++.+++.. .+++++. .||||++ |.-++..++
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~ 160 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL 160 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh
Confidence 777765444344432 122345556554 6788887 5999999 677777889
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhh--cccccccCCceeec
Q 003258 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK--DKDTRFENAATEFS 494 (835)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~--~~~~~~~n~~v~~~ 494 (835)
.+|+++|||||-||||...-..++. .++.+.+.+..++++|||..+..+. |....+.+|.+...
T Consensus 161 lePkl~ILDE~DSGLDIdalk~V~~-~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~s 226 (251)
T COG0396 161 LEPKLAILDEPDSGLDIDALKIVAE-GINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKS 226 (251)
T ss_pred cCCCEEEecCCCcCccHHHHHHHHH-HHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEec
Confidence 9999999999999999999999998 7777888899999999999987766 67777888888765
No 316
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.85 E-value=3.3e-21 Score=205.99 Aligned_cols=165 Identities=18% Similarity=0.193 Sum_probs=131.7
Q ss_pred EEEeeeeeecCC-----cee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh-h-h--------------------
Q 003258 327 MTVGSLSKGISD-----FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-L-M-------------------- 377 (835)
Q Consensus 327 l~~~~ls~~y~~-----~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~-~-m-------------------- 377 (835)
++++||+..|.. +.| ++||++.+| ++++|+|.+||||||+.+.| |++. . .
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~G-E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKG-EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCC-cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 578999999853 234 999999999 99999999999999999998 7664 1 1
Q ss_pred ------cccceeecCCCCCCchH---------------------------HHHHHHHcCCcc---cccCCcccchHHHH-
Q 003258 378 ------SKAGLYLPAKNHPRLPW---------------------------FDLILADIGDHQ---SLEQNLSTFSGHIS- 420 (835)
Q Consensus 378 ------a~~G~~vP~~~~~~i~~---------------------------~d~i~~~ig~~~---~~~~~lstfSgg~~- 420 (835)
++--.++||++...+.. ..+++..+|+.+ .++.++..|||||+
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 11223566654211111 123456677664 56899999999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 421 rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
|+.+|++++.+|+|||.||||++||...++.+.. +++.+.+ .|.++|++|||+. +..+||++..+..|.+.-
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~-Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE 234 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILD-LLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVE 234 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEE
Confidence 8999999999999999999999999999999999 6666665 7899999999998 678999999998887754
No 317
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.85 E-value=3.4e-21 Score=227.18 Aligned_cols=168 Identities=17% Similarity=0.183 Sum_probs=127.5
Q ss_pred CeEEEeeeeeecCC-cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hcccc
Q 003258 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (835)
Q Consensus 325 ~~l~~~~ls~~y~~-~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~~G 381 (835)
+.++++||+|+|++ .++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+.-
T Consensus 321 ~~i~~~~v~f~y~~~~~~l~~i~~~i~~G-~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 399 (547)
T PRK10522 321 QTLELRNVTFAYQDNGFSVGPINLTIKRG-ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLF 399 (547)
T ss_pred ceEEEEEEEEEeCCCCeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhhe
Confidence 36899999999964 334 999999999 99999999999999999999 33321 00111
Q ss_pred eeecCCCCCCc-------------hHHHHHHHHcCCcccccCC-----cccchHHHH-HHHHHHHHcCCCcEEEEeCCCC
Q 003258 382 LYLPAKNHPRL-------------PWFDLILADIGDHQSLEQN-----LSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (835)
Q Consensus 382 ~~vP~~~~~~i-------------~~~d~i~~~ig~~~~~~~~-----lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~ 442 (835)
.++|++.. .+ ..+...+..+|....+..+ -..|||||+ |++++++++.+|+++||||||+
T Consensus 400 ~~v~q~~~-lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts 478 (547)
T PRK10522 400 SAVFTDFH-LFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAA 478 (547)
T ss_pred EEEecChh-HHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 23444321 00 0122334455555443321 358999999 8999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 443 glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
++|+.....+...+.+.+...+.|+|++||+.+....||+++.+++|++...
T Consensus 479 ~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 479 DQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 9999999999887776665557899999999988889999999999987643
No 318
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.85 E-value=2.4e-21 Score=230.98 Aligned_cols=160 Identities=21% Similarity=0.271 Sum_probs=129.5
Q ss_pred CCeEEEeeeeeecCCc--ee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchH-----
Q 003258 324 NSEMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW----- 394 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~--~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~----- 394 (835)
.|.++++||+|+|+.. .+ ++|+++++| +.++|+|+||||||||+|.+ .|++.|..|...++.
T Consensus 469 ~g~I~~~nvsf~y~~~~~~vL~~isL~I~~G-e~vaIvG~SGsGKSTL~KLL--------~gly~p~~G~I~~dg~dl~~ 539 (709)
T COG2274 469 QGEIEFENVSFRYGPDDPPVLEDLSLEIPPG-EKVAIVGRSGSGKSTLLKLL--------LGLYKPQQGRILLDGVDLND 539 (709)
T ss_pred CceEEEEEEEEEeCCCCcchhhceeEEeCCC-CEEEEECCCCCCHHHHHHHH--------hcCCCCCCceEEECCEeHHh
Confidence 3679999999999764 34 999999999 99999999999999999999 666666666322211
Q ss_pred ------------------------H------------HHH---HHHcC-----------CcccccCCcccchHHHH-HHH
Q 003258 395 ------------------------F------------DLI---LADIG-----------DHQSLEQNLSTFSGHIS-RIV 423 (835)
Q Consensus 395 ------------------------~------------d~i---~~~ig-----------~~~~~~~~lstfSgg~~-rl~ 423 (835)
. +++ ....| .+-.+...-+.|||||| |++
T Consensus 540 i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrla 619 (709)
T COG2274 540 IDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLA 619 (709)
T ss_pred cCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHH
Confidence 1 112 11222 23344566788999999 899
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 424 ~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+|+++..+|++||||||||+||+.....+...+.+... |+|+|++||.......||+++.++.|++..+
T Consensus 620 lARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~ 688 (709)
T COG2274 620 LARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRLSTIRSADRIIVLDQGKIVEQ 688 (709)
T ss_pred HHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccchHhhhccEEEEccCCceecc
Confidence 99999999999999999999999999999886666532 5899999999999999999999999998765
No 319
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.85 E-value=2.5e-21 Score=202.62 Aligned_cols=147 Identities=20% Similarity=0.250 Sum_probs=114.8
Q ss_pred eeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c-------ccceeecCCCCC----CchH-----------
Q 003258 345 IKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-------KAGLYLPAKNHP----RLPW----------- 394 (835)
Q Consensus 345 l~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a-------~~G~~vP~~~~~----~i~~----------- 394 (835)
|++.+| ++++|+||||||||||||+| |+..+- . +.-.|+|+.... .+..
T Consensus 1 l~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 1 LSADKG-ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred CccCCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 457789 99999999999999999999 554321 1 112455654311 0111
Q ss_pred --------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHH
Q 003258 395 --------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459 (835)
Q Consensus 395 --------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~ 459 (835)
+..++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||+|||+.....+... +..
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~-l~~ 158 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTEL-FIE 158 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH
Confidence 22345667777778899999999999 89999999999999999999999999999999995 455
Q ss_pred HhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 460 LRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 460 l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+.+.+.|+|++||+.+ +..+|++++.+ +|++...
T Consensus 159 ~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~ 193 (223)
T TIGR03771 159 LAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIAD 193 (223)
T ss_pred HHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence 6666889999999987 66789999888 7877643
No 320
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.85 E-value=3.5e-21 Score=227.41 Aligned_cols=160 Identities=18% Similarity=0.248 Sum_probs=127.4
Q ss_pred CeEEEeeeeeecCCc-----ee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCch----
Q 003258 325 SEMTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP---- 393 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~-----~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~---- 393 (835)
+.++++||+|+|++. ++ ++||++++| ++++|+||||||||||++++ +|++.|.+|...+.
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G-~~~aivG~sGsGKSTl~~ll--------~g~~~p~~G~i~~~g~~i 406 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQG-DIVFIVGENGCGKSTLAKLF--------CGLYIPQEGEILLDGAAV 406 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCC-cEEEEECCCCCCHHHHHHHH--------hCCCCCCCcEEEECCEEC
Confidence 468999999999752 34 999999999 99999999999999999999 44444444311000
Q ss_pred -------------------------------------HHHHHHHHcCCcccccC------CcccchHHHH-HHHHHHHHc
Q 003258 394 -------------------------------------WFDLILADIGDHQSLEQ------NLSTFSGHIS-RIVDILELV 429 (835)
Q Consensus 394 -------------------------------------~~d~i~~~ig~~~~~~~------~lstfSgg~~-rl~~~~~la 429 (835)
-+.+++...++.+.+.. ....|||||+ |++++++++
T Consensus 407 ~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall 486 (555)
T TIGR01194 407 SADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWL 486 (555)
T ss_pred CCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHH
Confidence 01234555565554432 1368999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
.+|+++||||||+++|+.....+.+.+++.+...+.|+|++||+.+....||+++.+++|++..
T Consensus 487 ~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 487 EDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550 (555)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999988777666556899999999998778999999999998753
No 321
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=5e-21 Score=186.06 Aligned_cols=160 Identities=23% Similarity=0.240 Sum_probs=123.3
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC-------------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------------- 389 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~------------- 389 (835)
+.+.+.++|+.|+...- ++||.+.+| ++++|+|.+||||||||++| ++-..|+.+.
T Consensus 5 PLL~V~~lsk~Yg~~~gc~~vsF~l~PG-eVLgiVGESGSGKtTLL~~i--------s~rl~p~~G~v~Y~~r~~~~~dl 75 (258)
T COG4107 5 PLLSVSGLSKLYGPGKGCRDVSFDLYPG-EVLGIVGESGSGKTTLLKCI--------SGRLTPDAGTVTYRMRDGQPRDL 75 (258)
T ss_pred cceeehhhhhhhCCCcCccccceeecCC-cEEEEEecCCCcHHhHHHHH--------hcccCCCCCeEEEEcCCCCchhH
Confidence 45678899999987543 999999999 99999999999999999999 3333333331
Q ss_pred ----------------------------------CCchH---------HH-------HHHHHcCCc-ccccCCcccchHH
Q 003258 390 ----------------------------------PRLPW---------FD-------LILADIGDH-QSLEQNLSTFSGH 418 (835)
Q Consensus 390 ----------------------------------~~i~~---------~d-------~i~~~ig~~-~~~~~~lstfSgg 418 (835)
..++- +. ..+..+.++ +.++..+.+||||
T Consensus 76 ~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGG 155 (258)
T COG4107 76 YTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGG 155 (258)
T ss_pred hhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchH
Confidence 01100 11 123333332 4577889999999
Q ss_pred HH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhcccccccCCceee
Q 003258 419 IS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRFENAATEF 493 (835)
Q Consensus 419 ~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~-~~~~~~~~~n~~v~~ 493 (835)
|+ |+.+++.+.+.|.|++|||||.|||..-.+.|...+-....+-+..++++|||..+.. ++++...+..|.+..
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 99 8999999999999999999999999999999999444444566889999999999766 677777788887753
No 322
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.85 E-value=2.9e-21 Score=220.11 Aligned_cols=171 Identities=16% Similarity=0.133 Sum_probs=135.4
Q ss_pred CCCeEEEeeeeeecCC------------cee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------ccc-
Q 003258 323 ENSEMTVGSLSKGISD------------FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKA- 380 (835)
Q Consensus 323 g~~~l~~~~ls~~y~~------------~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a~~- 380 (835)
+..+++++||++.|.. +.| ++||++.+| ++++|+|++||||||+.|+| ||+.+- ++-
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~G-E~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~ 355 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREG-ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL 355 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccc
Confidence 4568899999999973 113 999999999 99999999999999999999 454331 000
Q ss_pred -------------ceeecCCCCCCc----hH----------------------HHHHHHHcCCcc-cccCCcccchHHHH
Q 003258 381 -------------GLYLPAKNHPRL----PW----------------------FDLILADIGDHQ-SLEQNLSTFSGHIS 420 (835)
Q Consensus 381 -------------G~~vP~~~~~~i----~~----------------------~d~i~~~ig~~~-~~~~~lstfSgg~~ 420 (835)
-..++++..+.+ ++ ++.++..+|+.. .+++++..|||||+
T Consensus 356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQr 435 (539)
T COG1123 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQR 435 (539)
T ss_pred ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchh
Confidence 001111111111 11 345577888876 58999999999999
Q ss_pred -HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 421 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 421 -rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|+++|++++.+|.+|++|||++.||+.....+.+.+.+...+.|.|.||+|||+. +..+||++..+.+|.+...
T Consensus 436 QRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~ 511 (539)
T COG1123 436 QRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE 511 (539)
T ss_pred HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe
Confidence 8999999999999999999999999999999999666655667999999999998 6779999999999987654
No 323
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.9e-21 Score=215.72 Aligned_cols=164 Identities=18% Similarity=0.242 Sum_probs=128.6
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCC---------C---C
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN---------H---P 390 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~---------~---~ 390 (835)
.-|.+.+++..||++.+ .-++++..| +.++|+||||+|||||||+|+--.+ .|+++|++- . +
T Consensus 79 ~Di~~~~fdLa~G~k~LL~~a~L~L~~G-rRYGLvGrNG~GKsTLLRaia~~~v---~~f~veqE~~g~~t~~~~~~l~~ 154 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGGKILLNKANLTLSRG-RRYGLVGRNGIGKSTLLRAIANGQV---SGFHVEQEVRGDDTEALQSVLES 154 (582)
T ss_pred cceeeeeeeeeecchhhhcCCceeeecc-cccceeCCCCCcHHHHHHHHHhcCc---CccCchhheeccchHHHhhhhhc
Confidence 35788899999998876 888999999 8999999999999999999944221 344444331 0 0
Q ss_pred Cc-------------------hHHHHHHHHcCCcc-cccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhH
Q 003258 391 RL-------------------PWFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (835)
Q Consensus 391 ~i-------------------~~~d~i~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~ 449 (835)
.. .++++++.-+|..+ -..++..+||||.+ |+++|+++..+|+|||||||||+||..
T Consensus 155 D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~-- 232 (582)
T KOG0062|consen 155 DTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVV-- 232 (582)
T ss_pred cHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhH--
Confidence 00 01233566777664 56789999999999 999999999999999999999999995
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeeccc
Q 003258 450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLE 496 (835)
Q Consensus 450 ~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~~~ 496 (835)
+++| +-.||...+.|+|+||||.. |..+|..++.+++-++.++.+
T Consensus 233 -av~W-Le~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkG 278 (582)
T KOG0062|consen 233 -AVAW-LENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKG 278 (582)
T ss_pred -HHHH-HHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcC
Confidence 5667 77788888899999999988 778998888887766554433
No 324
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=4.6e-21 Score=202.05 Aligned_cols=143 Identities=21% Similarity=0.233 Sum_probs=122.6
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC-------------------------------C
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------------------------------P 390 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~-------------------------------~ 390 (835)
++||+++.| ++++|+|-+|||||||++++ .++..|..|. .
T Consensus 46 ~~sl~v~~G-eIfViMGLSGSGKSTLvR~~--------NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 46 DASLDVEEG-EIFVIMGLSGSGKSTLVRLL--------NRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred cceeeecCC-eEEEEEecCCCCHHHHHHHH--------hccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 789999999 99999999999999999999 4444444331 1
Q ss_pred CchH------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCC
Q 003258 391 RLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (835)
Q Consensus 391 ~i~~------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glD 445 (835)
-+|+ ..+.+..+|+.+..++++..|||||+ |+-+|++++++|+++|||||+|.||
T Consensus 117 LlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALD 196 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALD 196 (386)
T ss_pred cccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcC
Confidence 1111 23457888999999999999999999 8999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 446 PSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 446 p~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
|.-+..+-.-+++.-.+-+.|++|+|||++ -.++.+++..+++|.+.-
T Consensus 197 PLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ 245 (386)
T COG4175 197 PLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQ 245 (386)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEE
Confidence 999999999888877777899999999987 557999999999998864
No 325
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.85 E-value=6.7e-21 Score=224.62 Aligned_cols=167 Identities=24% Similarity=0.251 Sum_probs=126.1
Q ss_pred CeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------ccc
Q 003258 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (835)
Q Consensus 325 ~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~ 380 (835)
+.++++|++++|++ +++ ++||++++| +.++|+||||||||||+|++ |+..+- .+.
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G-~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAG-EALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence 46899999999954 344 999999999 99999999999999999999 443221 112
Q ss_pred ceeecCCCCC-CchHHHHH------------------------HHHc--CCcccccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 381 GLYLPAKNHP-RLPWFDLI------------------------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 381 G~~vP~~~~~-~i~~~d~i------------------------~~~i--g~~~~~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
-.++|++... .-++.+++ +..+ |.+..+.....+|||||+ |++++++++.+|
T Consensus 394 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~ 473 (544)
T TIGR01842 394 IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP 473 (544)
T ss_pred eEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 2355555310 00111221 1222 223345556788999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
+++||||||+|+|+.....+.+.+. .+...+.|+|++||+.+....||+++.+.+|++..
T Consensus 474 ~ililDEpts~LD~~~~~~i~~~l~-~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~ 533 (544)
T TIGR01842 474 KLVVLDEPNSNLDEEGEQALANAIK-ALKARGITVVVITHRPSLLGCVDKILVLQDGRIAR 533 (544)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHH-HHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999988554 44445789999999998778899999999998764
No 326
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.84 E-value=7.8e-21 Score=211.29 Aligned_cols=157 Identities=20% Similarity=0.258 Sum_probs=136.3
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCC-------------
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP------------- 390 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~------------- 390 (835)
.+++.+++|.|++... ++||++.+| ++.+|+|.||+|||||||++ .|+|.|.+|..
T Consensus 4 ~l~~~~itK~f~~~~And~V~l~v~~G-eIHaLLGENGAGKSTLm~iL--------~G~~~P~~GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDVSLSVKKG-EIHALLGENGAGKSTLMKIL--------FGLYQPDSGEIRVDGKEVRIKSPR 74 (501)
T ss_pred eEEEeccEEEcCCEEecCceeeeecCC-cEEEEeccCCCCHHHHHHHH--------hCcccCCcceEEECCEEeccCCHH
Confidence 5788999999996444 899999999 99999999999999999999 88888877721
Q ss_pred ------------------CchH------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHH
Q 003258 391 ------------------RLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILE 427 (835)
Q Consensus 391 ------------------~i~~------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~ 427 (835)
.+++ +..+..++|+.=+.+..++.||.|++ |+.++.+
T Consensus 75 dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 75 DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred HHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHH
Confidence 1111 23445667777888999999999988 7888899
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCcee
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~ 492 (835)
+..++++|||||||+-|-|.+...|.. +++.|.+.|++||++||-++ +..+||+...+..|++.
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~-~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvv 219 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFE-ILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEE
Confidence 999999999999999999999999999 88899999999999999965 88899999999999865
No 327
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.84 E-value=8.7e-21 Score=225.67 Aligned_cols=166 Identities=14% Similarity=0.131 Sum_probs=124.5
Q ss_pred CeEEEeeeeeecCC-cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cccc
Q 003258 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (835)
Q Consensus 325 ~~l~~~~ls~~y~~-~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G 381 (835)
+.++++||+++|++ +.+ ++|+++++| +.++|+||||||||||+|++ |+..+- .+.-
T Consensus 333 ~~I~~~~vsf~y~~~~~iL~~inl~i~~G-~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 411 (588)
T PRK13657 333 GAVEFDDVSFSYDNSRQGVEDVSFEAKPG-QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI 411 (588)
T ss_pred CeEEEEEEEEEeCCCCceecceeEEECCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 35889999999964 445 999999999 99999999999999999999 333220 1122
Q ss_pred eeecCCCCC-CchHHH---------------HHHHHcCCc-----------ccccCCcccchHHHH-HHHHHHHHcCCCc
Q 003258 382 LYLPAKNHP-RLPWFD---------------LILADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSRES 433 (835)
Q Consensus 382 ~~vP~~~~~-~i~~~d---------------~i~~~ig~~-----------~~~~~~lstfSgg~~-rl~~~~~la~~~~ 433 (835)
.|+|++... .-++.+ .++...|+. ..+......|||||+ |+++|++++.+|+
T Consensus 412 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~ 491 (588)
T PRK13657 412 AVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPP 491 (588)
T ss_pred EEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 355555310 001111 122223322 223344567999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
++||||||++||+.....+...+.+ +. .++|+|++||+.+....+|+++.+++|++..
T Consensus 492 iliLDEpts~LD~~t~~~i~~~l~~-~~-~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~ 549 (588)
T PRK13657 492 ILILDEATSALDVETEAKVKAALDE-LM-KGRTTFIIAHRLSTVRNADRILVFDNGRVVE 549 (588)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHH-Hh-cCCEEEEEEecHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999886654 33 3689999999999888999999999998763
No 328
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.84 E-value=7e-21 Score=230.35 Aligned_cols=164 Identities=16% Similarity=0.189 Sum_probs=124.5
Q ss_pred CeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hccc
Q 003258 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (835)
Q Consensus 325 ~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~~ 380 (835)
+.++++||+|+|++ +++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~G-e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 528 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPG-EFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ 528 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhc
Confidence 46899999999953 344 999999999 99999999999999999999 33322 0112
Q ss_pred ceeecCCCCCCc--hHH--------------HHHHHHcCCccc-----------ccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 381 GLYLPAKNHPRL--PWF--------------DLILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 381 G~~vP~~~~~~i--~~~--------------d~i~~~ig~~~~-----------~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
-.++|++.. -+ ++. .+++...|+.+. +...-+.|||||+ |+++|++++.+|
T Consensus 529 i~~v~Q~~~-lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p 607 (686)
T TIGR03797 529 LGVVLQNGR-LMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP 607 (686)
T ss_pred cEEEccCCc-cCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 234555431 00 111 222333343332 3334578999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+++||||||+++|+.....+...+.+. ++|+|++||..+....+|+++.+++|++..+
T Consensus 608 ~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~ 665 (686)
T TIGR03797 608 RILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQ 665 (686)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHHcCCEEEEEECCEEEEE
Confidence 999999999999999999988865543 6799999999998788999999999988644
No 329
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.84 E-value=9.1e-21 Score=224.76 Aligned_cols=166 Identities=18% Similarity=0.175 Sum_probs=127.0
Q ss_pred CeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------ccc
Q 003258 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (835)
Q Consensus 325 ~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~ 380 (835)
+.++++||+++|++ +++ ++||++++| +.++|+||||||||||+|++ |+..+- .+.
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G-~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 415 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAG-EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA 415 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence 46899999999964 334 999999999 99999999999999999999 333210 111
Q ss_pred ceeecCCCCC-CchH---------------HHHHHHHcCCcccccC----------CcccchHHHH-HHHHHHHHcCCCc
Q 003258 381 GLYLPAKNHP-RLPW---------------FDLILADIGDHQSLEQ----------NLSTFSGHIS-RIVDILELVSRES 433 (835)
Q Consensus 381 G~~vP~~~~~-~i~~---------------~d~i~~~ig~~~~~~~----------~lstfSgg~~-rl~~~~~la~~~~ 433 (835)
-.++|++... .-++ +.+.+...|..+.+++ ....|||||+ |+++|++++.+|+
T Consensus 416 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ 495 (574)
T PRK11160 416 ISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAP 495 (574)
T ss_pred eeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 2345544310 0001 2233455565554443 5677999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
++||||||+++|+.+...+..++.+. . +++|+|++||+.+....||+++.+++|++..
T Consensus 496 ililDE~ts~lD~~t~~~i~~~l~~~-~-~~~tviiitHr~~~~~~~d~i~~l~~G~i~~ 553 (574)
T PRK11160 496 LLLLDEPTEGLDAETERQILELLAEH-A-QNKTVLMITHRLTGLEQFDRICVMDNGQIIE 553 (574)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEecChhHHHhCCEEEEEeCCeEEE
Confidence 99999999999999999999966554 3 3789999999998777899999999998764
No 330
>PRK13409 putative ATPase RIL; Provisional
Probab=99.84 E-value=8.4e-21 Score=224.51 Aligned_cols=153 Identities=21% Similarity=0.193 Sum_probs=117.9
Q ss_pred eeeeecCCc-ee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-cc--------------cc----------
Q 003258 331 SLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-SK--------------AG---------- 381 (835)
Q Consensus 331 ~ls~~y~~~-~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-a~--------------~G---------- 381 (835)
+++++||+. ++ +++ .+.+| ++++|+||||+|||||||+| |++.+- +. .|
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~G-ev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEG-KVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred CceEEecCCceeEecCC-cCCCC-CEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 488999863 33 888 78999 99999999999999999999 443211 00 00
Q ss_pred -------eeecCCCCCCc------------------hHHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 382 -------LYLPAKNHPRL------------------PWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 382 -------~~vP~~~~~~i------------------~~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
.+.|+.. ..+ .-+++++..+|+....++.+++|||||+ |++++++++.+|+++
T Consensus 156 ~~~~~~~~~~~q~~-~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~ll 234 (590)
T PRK13409 156 YNGEIKVVHKPQYV-DLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFY 234 (590)
T ss_pred hccCcceeecccch-hhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 1112211 000 0123456778888888999999999999 899999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccC
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n 488 (835)
||||||+|||+.....+.. ++..+.+ +.++|++||+.+ +..+++++..+.+
T Consensus 235 lLDEPts~LD~~~~~~l~~-~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 235 FFDEPTSYLDIRQRLNVAR-LIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred EEECCCCCCCHHHHHHHHH-HHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999 6666777 899999999987 6678888866643
No 331
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=5.9e-21 Score=196.61 Aligned_cols=144 Identities=19% Similarity=0.229 Sum_probs=123.1
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCc------------------hH---------
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL------------------PW--------- 394 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i------------------~~--------- 394 (835)
++||++.+| +.++|+|+||||||||||+| +|.+.|.+|...+ +.
T Consensus 45 disf~i~~G-e~vGiiG~NGaGKSTLlkli--------aGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~ 115 (249)
T COG1134 45 DISFEIYKG-ERVGIIGHNGAGKSTLLKLI--------AGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGL 115 (249)
T ss_pred CceEEEeCC-CEEEEECCCCCcHHHHHHHH--------hCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHH
Confidence 999999999 99999999999999999999 9999998873211 11
Q ss_pred ------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHh
Q 003258 395 ------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 461 (835)
Q Consensus 395 ------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~ 461 (835)
++.|.+.-.+.+.+++++.++|.||+ |++++.+...+|+++||||..+--|+.-...-.. .+..+.
T Consensus 116 ~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~-rl~e~~ 194 (249)
T COG1134 116 ILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLE-RLNELV 194 (249)
T ss_pred HhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHH-HHHHHH
Confidence 33444444566789999999999999 9999999999999999999999999998888777 444455
Q ss_pred cCCcEEEEEecchh-HHhhhcccccccCCceeecc
Q 003258 462 DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (835)
Q Consensus 462 ~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~~ 495 (835)
+++.|+|++||+++ ++.+|++.+.+++|.+.+..
T Consensus 195 ~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G 229 (249)
T COG1134 195 EKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEG 229 (249)
T ss_pred HcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcC
Confidence 55799999999987 88999999999999998763
No 332
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.84 E-value=9.5e-21 Score=227.17 Aligned_cols=168 Identities=20% Similarity=0.273 Sum_probs=135.5
Q ss_pred CeEEEeeeeeecCC----cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------------
Q 003258 325 SEMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 377 (835)
Q Consensus 325 ~~l~~~~ls~~y~~----~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------- 377 (835)
.|++++|+++.|++ ..+ ++||++.+| ++++|+||||+|||||||+| |+..+-
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 81 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAG-EMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALA 81 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHH
Confidence 37899999999953 233 999999999 99999999999999999999 554320
Q ss_pred ---cccceeecCCCCC--CchHH---------------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcC
Q 003258 378 ---SKAGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (835)
Q Consensus 378 ---a~~G~~vP~~~~~--~i~~~---------------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~ 430 (835)
.+...|+|+.... .++.. ..++..+|+.+..++.+.+||+||+ |+.++++++.
T Consensus 82 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~ 161 (648)
T PRK10535 82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN 161 (648)
T ss_pred HHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 1123466665421 11211 2345567777788999999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+|+++|||||++|||+.....+.. +++.+.+.+.|+|++||+.++...|++.+.+.+|++...
T Consensus 162 ~P~lLllDEP~~gLD~~s~~~l~~-ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~ 224 (648)
T PRK10535 162 GGQVILADEPTGALDSHSGEEVMA-ILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRN 224 (648)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEee
Confidence 999999999999999999999999 566666668999999999997778999999999988654
No 333
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=7.8e-21 Score=187.83 Aligned_cols=139 Identities=22% Similarity=0.253 Sum_probs=112.9
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCC-------------
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP------------- 390 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~------------- 390 (835)
|++.+|++...+..++ +++|++.+| +++.|+||||+|||||||+| +|+.-|.+|.+
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~G-e~~~i~G~NG~GKTtLLRil--------aGLl~p~~G~v~~~~~~i~~~~~~ 72 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAG-EALQITGPNGAGKTTLLRIL--------AGLLRPDAGEVYWQGEPIQNVRES 72 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCC-CEEEEECCCCCcHHHHHHHH--------HcccCCCCCeEEecCCCCccchhh
Confidence 3556777777777666 999999999 99999999999999999999 66666655521
Q ss_pred ----------------CchHH------------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 391 ----------------RLPWF------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 391 ----------------~i~~~------------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
.++.+ .+.++.+|+....+.++.+||.||+ |+++++..+..++|.
T Consensus 73 ~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLW 152 (209)
T COG4133 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLW 152 (209)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCce
Confidence 11112 2346778888889999999999998 899999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~ 474 (835)
|||||++++|....+.+...+..+ ..+|+.||+|||..
T Consensus 153 iLDEP~taLDk~g~a~l~~l~~~H-~~~GGiVllttHq~ 190 (209)
T COG4133 153 ILDEPFTALDKEGVALLTALMAAH-AAQGGIVLLTTHQP 190 (209)
T ss_pred eecCcccccCHHHHHHHHHHHHHH-hcCCCEEEEecCCc
Confidence 999999999998888887755554 55588999999984
No 334
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=4.1e-21 Score=185.97 Aligned_cols=147 Identities=27% Similarity=0.345 Sum_probs=119.9
Q ss_pred CCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC-------------------------
Q 003258 337 SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------------------------- 389 (835)
Q Consensus 337 ~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~------------------------- 389 (835)
++..+ ++||.+.+| +.++||||+|||||||||+++.+ ..|.+|.
T Consensus 14 ~~a~il~~isl~v~~G-e~iaitGPSG~GKStllk~va~L--------isp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q 84 (223)
T COG4619 14 GDAKILNNISLSVRAG-EFIAITGPSGCGKSTLLKIVASL--------ISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQ 84 (223)
T ss_pred CCCeeecceeeeecCC-ceEEEeCCCCccHHHHHHHHHhc--------cCCCCceEEEcCccccccChHHHHHHHHHHHc
Confidence 34444 999999999 99999999999999999999433 2222221
Q ss_pred ------------CCchH-----------HHHHHHHcCCccc-ccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCC
Q 003258 390 ------------PRLPW-----------FDLILADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (835)
Q Consensus 390 ------------~~i~~-----------~d~i~~~ig~~~~-~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~gl 444 (835)
..+|+ +-..+++++..++ +.+.+..||||++ |+++++.+..-|.++||||||+.|
T Consensus 85 ~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 85 TPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred CccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 11121 3456778887664 5788999999999 899999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCcee
Q 003258 445 DPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATE 492 (835)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~viitTH~~el-~~~~~~~~~~~n~~v~ 492 (835)
|+.....+...+..+..++...++-+|||.+- .+.+++.+.+..|+..
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 99999999998888888889999999999874 6789999888887653
No 335
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.84 E-value=7.7e-21 Score=230.90 Aligned_cols=164 Identities=18% Similarity=0.200 Sum_probs=125.1
Q ss_pred CeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hccc
Q 003258 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (835)
Q Consensus 325 ~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~~ 380 (835)
+.++++||+|+|++ +++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~G-e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPG-QRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 46899999999974 344 999999999 99999999999999999999 44321 0112
Q ss_pred ceeecCCCCCCc--hHHH---------------HHHHHcCCc-----------ccccCCcccchHHHH-HHHHHHHHcCC
Q 003258 381 GLYLPAKNHPRL--PWFD---------------LILADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 381 G~~vP~~~~~~i--~~~d---------------~i~~~ig~~-----------~~~~~~lstfSgg~~-rl~~~~~la~~ 431 (835)
-.++|++.. -+ ++.+ +++...|.. ..+...-..|||||+ |+++|++++.+
T Consensus 555 i~~v~Q~~~-lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~ 633 (710)
T TIGR03796 555 VAMVDQDIF-LFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN 633 (710)
T ss_pred eeEEecCCh-hhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhC
Confidence 235555531 00 0111 222223332 233445578999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
|+++||||||++||+.....+.+.+.+ .++|+|++||..+....||+++.+++|++...
T Consensus 634 p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~ 692 (710)
T TIGR03796 634 PSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQR 692 (710)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999998886654 48999999999998888999999999988754
No 336
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=1e-20 Score=181.81 Aligned_cols=165 Identities=17% Similarity=0.244 Sum_probs=133.9
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhccccee---------------------
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLY--------------------- 383 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~--------------------- 383 (835)
|.++++++.||...+ +++++.+.| +.++++||+|+|||||++++.|+-. ...|-.
T Consensus 3 irv~~in~~yg~~q~lfdi~l~~~~g-etlvllgpsgagkssllr~lnlle~-p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 3 IQLNGINCFYGAHQALFDITLDCPEG-ETLVLLGPSGAGKSSLLRVLNLLEM-PRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred eEEcccccccccchheeeeeecCCCC-CEEEEECCCCCchHHHHHHHHHHhC-CCCCeEEecccccccccCccHHHHHHH
Confidence 678999999998665 899999999 9999999999999999999966532 112211
Q ss_pred ------ecCCC--CCCchHH----------------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 384 ------LPAKN--HPRLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 384 ------vP~~~--~~~i~~~----------------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
+++.- .+.+.++ .+++.++.+.+..++.+-.||||++ |++++++++.+|
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkp 160 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEP 160 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCC
Confidence 11110 0111111 2457778888999999999999998 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccccCCceeec
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 494 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~-~~~~~~~~~~n~~v~~~ 494 (835)
.++|+||||+.|||+-...+.. |++.|...|.|-+++||..++. ..+.+++.+++|++...
T Consensus 161 qvllfdeptaaldpeitaqvv~-iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~ 222 (242)
T COG4161 161 QVLLFDEPTAALDPEITAQIVS-IIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred cEEeecCcccccCHHHHHHHHH-HHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEee
Confidence 9999999999999999999988 8888999999999999998854 58899999999988654
No 337
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.84 E-value=9.1e-21 Score=225.23 Aligned_cols=165 Identities=15% Similarity=0.162 Sum_probs=124.1
Q ss_pred CeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------ccc
Q 003258 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (835)
Q Consensus 325 ~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~ 380 (835)
+.++++||+++|++ +++ ++|+++++| +.++|+||||||||||+|+| |+..+- .+.
T Consensus 340 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G-~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAG-KTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred CeEEEEEEEEecCCCCCccccCceEEeCCC-CEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh
Confidence 35899999999964 344 999999999 99999999999999999999 444321 112
Q ss_pred ceeecCCCCCCc--hHHHH----------------HHHHcCCccc-----------ccCCcccchHHHH-HHHHHHHHcC
Q 003258 381 GLYLPAKNHPRL--PWFDL----------------ILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVS 430 (835)
Q Consensus 381 G~~vP~~~~~~i--~~~d~----------------i~~~ig~~~~-----------~~~~lstfSgg~~-rl~~~~~la~ 430 (835)
-.++|++.. -+ ++-++ .+...|..+. +...-..|||||+ |+++|++++.
T Consensus 419 i~~v~Q~~~-lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~ 497 (582)
T PRK11176 419 VALVSQNVH-LFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_pred ceEEccCce-eecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 235555531 00 01112 2222332221 2223366999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
+|+++||||||+++|+.....+..++.+ +.+ ++|+|++||+.+....||+++.+++|.+..
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~-~~~-~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e 558 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDE-LQK-NRTSLVIAHRLSTIEKADEILVVEDGEIVE 558 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHH-HhC-CCEEEEEecchHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999986655 333 689999999999888899999999988754
No 338
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=9.8e-21 Score=198.50 Aligned_cols=159 Identities=18% Similarity=0.131 Sum_probs=134.1
Q ss_pred CeEEEeeeeeecCC----------cee-ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCch
Q 003258 325 SEMTVGSLSKGISD----------FPV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP 393 (835)
Q Consensus 325 ~~l~~~~ls~~y~~----------~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~ 393 (835)
.+++++||++.|.. +.| ++||++.+| ++++|+|.+||||||+-|+| .|+..|++|...+.
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~g-e~~glVGESG~GKSTlgr~i--------~~L~~pt~G~i~f~ 73 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEG-ETLGLVGESGCGKSTLGRLI--------LGLEEPTSGEILFE 73 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCC-CEEEEEecCCCCHHHHHHHH--------HcCcCCCCceEEEc
Confidence 46889999998842 123 899999999 99999999999999999999 88888887743322
Q ss_pred --------------HHHHHHHHcCCcc-cccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHH
Q 003258 394 --------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSIL 457 (835)
Q Consensus 394 --------------~~d~i~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all 457 (835)
.+.+++..+|... .+.+++..|||||+ |+.+|++++.+|+++++|||++.||...++.+.. ++
T Consensus 74 g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIln-LL 152 (268)
T COG4608 74 GKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILN-LL 152 (268)
T ss_pred CcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHH-HH
Confidence 2456688888765 78999999999999 8999999999999999999999999999999999 55
Q ss_pred HHHh-cCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 458 QYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 458 ~~l~-~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
..+. +.|.+.+|+|||.. ...+++++..+..|.+.-
T Consensus 153 ~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE 190 (268)
T COG4608 153 KDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVE 190 (268)
T ss_pred HHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeE
Confidence 5565 45889999999998 556889888888887653
No 339
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.84 E-value=1.3e-20 Score=223.82 Aligned_cols=166 Identities=14% Similarity=0.125 Sum_probs=124.5
Q ss_pred CeEEEeeeeeecCC-cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cccc
Q 003258 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (835)
Q Consensus 325 ~~l~~~~ls~~y~~-~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G 381 (835)
+.++++||+++|++ +.+ ++||++++| +.++|+||||||||||++++ |+..+. .+.-
T Consensus 333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~G-~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 411 (585)
T TIGR01192 333 GAVEFRHITFEFANSSQGVFDVSFEAKAG-QTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSI 411 (585)
T ss_pred CeEEEEEEEEECCCCCccccceeEEEcCC-CEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 46899999999975 334 999999999 99999999999999999999 443221 1112
Q ss_pred eeecCCCCC-CchHHHHH---------------HHHc-----------CCcccccCCcccchHHHH-HHHHHHHHcCCCc
Q 003258 382 LYLPAKNHP-RLPWFDLI---------------LADI-----------GDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (835)
Q Consensus 382 ~~vP~~~~~-~i~~~d~i---------------~~~i-----------g~~~~~~~~lstfSgg~~-rl~~~~~la~~~~ 433 (835)
.++|++... .-++.+++ +... |.+..+......|||||+ |++++++++.+|+
T Consensus 412 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ 491 (585)
T TIGR01192 412 ATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAP 491 (585)
T ss_pred EEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 345555310 00111111 1111 222334456678999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
++||||||+|||+.....+...+.+ +. .+.|+|++||+.+....||+++.+++|++..
T Consensus 492 ililDEpts~LD~~~~~~i~~~l~~-~~-~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~ 549 (585)
T TIGR01192 492 ILVLDEATSALDVETEARVKNAIDA-LR-KNRTTFIIAHRLSTVRNADLVLFLDQGRLIE 549 (585)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHH-Hh-CCCEEEEEEcChHHHHcCCEEEEEECCEEEE
Confidence 9999999999999999999885544 43 3789999999998777899999999998764
No 340
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.1e-20 Score=211.38 Aligned_cols=158 Identities=18% Similarity=0.176 Sum_probs=131.3
Q ss_pred eEEEeeeeeecCCce--e--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchH-------
Q 003258 326 EMTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW------- 394 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~--v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~------- 394 (835)
.++++||+|+|.+.. + ++||++.+| +.++|+|++||||||++.++ +|.+.|++|...+..
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~G-EkvAIlG~SGsGKSTllqLl--------~~~~~~~~G~i~~~g~~~~~l~ 406 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQG-EKVAILGRSGSGKSTLLQLL--------AGAWDPQQGSITLNGVEIASLD 406 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCC-CeEEEECCCCCCHHHHHHHH--------HhccCCCCCeeeECCcChhhCC
Confidence 789999999997654 4 999999999 99999999999999999999 888888777322210
Q ss_pred -------------------------------------HHHHHHHcCCcc-----------cccCCcccchHHHH-HHHHH
Q 003258 395 -------------------------------------FDLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDI 425 (835)
Q Consensus 395 -------------------------------------~d~i~~~ig~~~-----------~~~~~lstfSgg~~-rl~~~ 425 (835)
+-.++..+|+++ .+...-..|||||+ |++++
T Consensus 407 ~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlA 486 (573)
T COG4987 407 EQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALA 486 (573)
T ss_pred hhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHH
Confidence 112355555543 33445578999999 89999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 426 ~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+.+.++.+++||||||.||||..-..+...+.+++. |+|+|++||+.--...+|+++.++||++...
T Consensus 487 R~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le~~drIivl~~Gkiie~ 553 (573)
T COG4987 487 RALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLERMDRIIVLDNGKIIEE 553 (573)
T ss_pred HHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccccHhhcCEEEEEECCeeeec
Confidence 999999999999999999999999999996776655 7899999999988889999999999988765
No 341
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.84 E-value=1.5e-20 Score=223.57 Aligned_cols=164 Identities=15% Similarity=0.165 Sum_probs=122.9
Q ss_pred CeEEEeeeeeec-CCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hcccc
Q 003258 325 SEMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (835)
Q Consensus 325 ~~l~~~~ls~~y-~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~~G 381 (835)
+.++++||++.| +++++ ++||++++| +.++|+||||||||||++++ |+. + +.+.-
T Consensus 348 ~~i~~~~vsf~~~~~~~vL~~i~l~i~~G-~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i 425 (588)
T PRK11174 348 VTIEAEDLEILSPDGKTLAGPLNFTLPAG-QRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHL 425 (588)
T ss_pred ceEEEEeeEEeccCCCeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhhe
Confidence 358999999755 45555 999999999 99999999999999999999 333 1 01112
Q ss_pred eeecCCCCCCc--hHHH---------------HHHHHc-----------CCcccccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 382 LYLPAKNHPRL--PWFD---------------LILADI-----------GDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 382 ~~vP~~~~~~i--~~~d---------------~i~~~i-----------g~~~~~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
.++||+.. -+ ++.+ +.+... |.+..+...-..|||||+ |+++|++++.+|
T Consensus 426 ~~v~Q~~~-LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~ 504 (588)
T PRK11174 426 SWVGQNPQ-LPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC 504 (588)
T ss_pred EEecCCCc-CCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 34555431 00 0111 122222 223334445567999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
+++||||||++||+.....+..++.+. . .+.|+|++||..+....||+++.+++|++..
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~~~-~-~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e 563 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALNAA-S-RRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQ 563 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHH-h-CCCEEEEEecChHHHHhCCEEEEEeCCeEee
Confidence 999999999999999999999866543 3 3689999999999888899999999998753
No 342
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=6.1e-21 Score=188.97 Aligned_cols=158 Identities=22% Similarity=0.259 Sum_probs=132.3
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCC------------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP------------ 390 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~------------ 390 (835)
..++++||+++|++... ++||.+.+| +.-+|+||||+||||+|.+| +|-..|+.|..
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~G-elr~lIGpNGAGKTT~mD~I--------tGKtrp~~G~v~f~g~~dl~~~~ 74 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPG-ELRVLIGPNGAGKTTLMDVI--------TGKTRPQEGEVLFDGDTDLTKLP 74 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCC-eEEEEECCCCCCceeeeeee--------cccCCCCcceEEEcCchhhccCC
Confidence 46789999999998654 999999999 99999999999999999999 55544544310
Q ss_pred --------------------CchH-----------------------------HHHHHHHcCCcccccCCcccchHHHHH
Q 003258 391 --------------------RLPW-----------------------------FDLILADIGDHQSLEQNLSTFSGHISR 421 (835)
Q Consensus 391 --------------------~i~~-----------------------------~d~i~~~ig~~~~~~~~lstfSgg~~r 421 (835)
.+++ ++.+++.+|+.+..+...+.||-|++|
T Consensus 75 e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQ 154 (249)
T COG4674 75 EHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQ 154 (249)
T ss_pred HHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhh
Confidence 0011 456788899999999999999999995
Q ss_pred -HHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 422 -IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 422 -l~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
+-+.+.++++|.|+|||||.+|+--.+....++ ++..++. .++++++-||++ +..+++++..++.|++..
T Consensus 155 wLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~tae-Ll~~la~-~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~ 226 (249)
T COG4674 155 WLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAE-LLKSLAG-KHSILVVEHDMGFVREIADKVTVLHEGSVLA 226 (249)
T ss_pred hhhhheeeccCCcEEEecCccCCCcHHHHHHHHH-HHHHHhc-CceEEEEeccHHHHHHhhheeEEEeccceee
Confidence 666688999999999999999999999999999 7777776 579999999999 667999998888887753
No 343
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.83 E-value=1.9e-20 Score=226.97 Aligned_cols=165 Identities=18% Similarity=0.197 Sum_probs=124.5
Q ss_pred CeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hccc
Q 003258 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (835)
Q Consensus 325 ~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~~ 380 (835)
+.++++||+|+|++ +++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G-~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~ 540 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPG-EKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhc
Confidence 46899999999964 334 999999999 99999999999999999999 33321 0112
Q ss_pred ceeecCCCCCCc--hHH---------------HHHHHHcCCcc-----------cccCCcccchHHHH-HHHHHHHHcCC
Q 003258 381 GLYLPAKNHPRL--PWF---------------DLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 381 G~~vP~~~~~~i--~~~---------------d~i~~~ig~~~-----------~~~~~lstfSgg~~-rl~~~~~la~~ 431 (835)
-.++|++.. -+ ++. .+++...|..+ .+...-..|||||+ |+++|++++.+
T Consensus 541 i~~v~Q~~~-lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~ 619 (694)
T TIGR03375 541 IGYVPQDPR-LFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD 619 (694)
T ss_pred cEEECCChh-hhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 234444431 00 111 12233333322 23344568999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
|+++||||||+++|+.....+.+.+.+. .+ ++|+|++||+.+....||+++.+++|++..
T Consensus 620 p~iliLDE~Ts~LD~~te~~i~~~l~~~-~~-~~T~iiItHrl~~~~~~D~iivl~~G~i~e 679 (694)
T TIGR03375 620 PPILLLDEPTSAMDNRSEERFKDRLKRW-LA-GKTLVLVTHRTSLLDLVDRIIVMDNGRIVA 679 (694)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHH-hC-CCEEEEEecCHHHHHhCCEEEEEeCCEEEe
Confidence 9999999999999999999999966543 33 689999999999888999999999998764
No 344
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.83 E-value=1.8e-20 Score=223.10 Aligned_cols=165 Identities=16% Similarity=0.166 Sum_probs=124.4
Q ss_pred CeEEEeeeeeecCC-cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cccc
Q 003258 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (835)
Q Consensus 325 ~~l~~~~ls~~y~~-~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G 381 (835)
+.++++|+++.|++ .++ ++||++++| +.++|+||||||||||+|++ |+..+- .+.-
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~G-e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i 417 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSR-GFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 45889999999964 344 999999999 99999999999999999999 333220 1112
Q ss_pred eeecCCCCCCch--H--------------HHHHHHHcCCcc-----------cccCCcccchHHHH-HHHHHHHHcCCCc
Q 003258 382 LYLPAKNHPRLP--W--------------FDLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRES 433 (835)
Q Consensus 382 ~~vP~~~~~~i~--~--------------~d~i~~~ig~~~-----------~~~~~lstfSgg~~-rl~~~~~la~~~~ 433 (835)
.++||+.. -++ + +.+++...|+.+ .+...-..|||||+ |+++|++++.+|+
T Consensus 418 ~~v~Q~~~-lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~ 496 (592)
T PRK10790 418 AMVQQDPV-VLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQ 496 (592)
T ss_pred EEEccCCc-cccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 34454431 110 1 122333344332 23334467999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
++||||||+++|+.....+...+.+ +.. ++|+|++||+.+....||+++.+++|++..
T Consensus 497 illlDEpts~LD~~t~~~i~~~l~~-~~~-~~tvIivtHr~~~l~~~D~ii~l~~G~i~~ 554 (592)
T PRK10790 497 ILILDEATANIDSGTEQAIQQALAA-VRE-HTTLVVIAHRLSTIVEADTILVLHRGQAVE 554 (592)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH-HhC-CCEEEEEecchHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999886654 433 689999999999888899999999998864
No 345
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.3e-20 Score=209.11 Aligned_cols=167 Identities=16% Similarity=0.163 Sum_probs=135.1
Q ss_pred CCeEEEeeeeeecCCce-e--ccceeecCCceEEEEEcCCCCChhhHHhhH-------Hhhhh------------hcccc
Q 003258 324 NSEMTVGSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-------GLASL------------MSKAG 381 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~-v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-------Gli~~------------ma~~G 381 (835)
++.|+++||+++|+++. | ++||++++| +.++|+|+|||||||+||++ |-+.+ +.++-
T Consensus 349 ~~~I~F~dV~f~y~~k~~iL~gvsf~I~kG-ekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGPKRKVLKGVSFTIPKG-EKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred CCcEEEEeeEEEeCCCCceecceeEEecCC-CEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhe
Confidence 35699999999998766 6 999999999 99999999999999999999 33332 34566
Q ss_pred eeecCCCCCCch--H------------HH---HHHHHcCCccccc-----------CCcccchHHHH-HHHHHHHHcCCC
Q 003258 382 LYLPAKNHPRLP--W------------FD---LILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 382 ~~vP~~~~~~i~--~------------~d---~i~~~ig~~~~~~-----------~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
.++||+.. -+. + ++ ++....|+.|.+. ..--.|||||+ |++++++++.+|
T Consensus 428 g~VPQd~~-LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda 506 (591)
T KOG0057|consen 428 GVVPQDSV-LFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA 506 (591)
T ss_pred eEeCCccc-ccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC
Confidence 79999972 221 1 22 2233445544433 34457999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+++++|||||+||..+-..|...+.. ...+.|+|++-|++.+..-+|+++.+.||.+...
T Consensus 507 ~Il~~DEaTS~LD~~TE~~i~~~i~~--~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~ 566 (591)
T KOG0057|consen 507 PILLLDEATSALDSETEREILDMIMD--VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEY 566 (591)
T ss_pred CeEEecCcccccchhhHHHHHHHHHH--hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEe
Confidence 99999999999999999999997777 3447899999999999999999999999998654
No 346
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.83 E-value=2e-20 Score=221.76 Aligned_cols=165 Identities=13% Similarity=0.144 Sum_probs=125.6
Q ss_pred CeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------ccc
Q 003258 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (835)
Q Consensus 325 ~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~ 380 (835)
+.++++||+++|++ .++ ++|+++++| +.++|+||||+|||||+|++ |+..+- .+.
T Consensus 329 ~~i~~~~v~f~y~~~~~~il~~inl~i~~G-~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~ 407 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRDRPALDSISLVIEPG-ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ 407 (571)
T ss_pred CeEEEEEEEEEcCCCCCccccCeeEEecCC-CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhh
Confidence 45889999999964 444 999999999 99999999999999999999 554321 112
Q ss_pred ceeecCCCCC---------------Cc--hHHHHHHHHcCCccc-----------ccCCcccchHHHH-HHHHHHHHcCC
Q 003258 381 GLYLPAKNHP---------------RL--PWFDLILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 381 G~~vP~~~~~---------------~i--~~~d~i~~~ig~~~~-----------~~~~lstfSgg~~-rl~~~~~la~~ 431 (835)
-.|+|+++.. .. .-+.+++...|+.+. +...-..|||||+ |+++|++++.+
T Consensus 408 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~ 487 (571)
T TIGR02203 408 VALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD 487 (571)
T ss_pred ceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 2466665410 00 012223334443322 2233457999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCcee
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATE 492 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~ 492 (835)
|+++||||||+++|+.....|...+.+ +. .++|+|++||+..+...||+++.+++|++.
T Consensus 488 ~~illLDEpts~LD~~~~~~i~~~L~~-~~-~~~tiIiitH~~~~~~~~D~ii~l~~g~i~ 546 (571)
T TIGR02203 488 APILILDEATSALDNESERLVQAALER-LM-QGRTTLVIAHRLSTIEKADRIVVMDDGRIV 546 (571)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHH-Hh-CCCEEEEEehhhHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999886654 33 368999999999988999999999998765
No 347
>PLN03211 ABC transporter G-25; Provisional
Probab=99.83 E-value=1.5e-20 Score=225.03 Aligned_cols=165 Identities=17% Similarity=0.223 Sum_probs=129.5
Q ss_pred EEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----------------cccceeecCC
Q 003258 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAK 387 (835)
Q Consensus 328 ~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-----------------a~~G~~vP~~ 387 (835)
..+|+++.|+++.+ ++|+++.+| ++++|+|||||||||||++| |+...- .+.-.|+|++
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~G-e~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASPG-EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcc
Confidence 35678899987766 999999999 99999999999999999999 554321 0112466665
Q ss_pred CCC--CchH------------------------HHHHHHHcCCcccc-----cCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 388 NHP--RLPW------------------------FDLILADIGDHQSL-----EQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 388 ~~~--~i~~------------------------~d~i~~~ig~~~~~-----~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
... .+++ ++.++..+|+.+.. ++....|||||+ |++++++++.+|+++
T Consensus 149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL 228 (659)
T PLN03211 149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 228 (659)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence 411 1111 23345566665543 345778999999 899999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh--HHhhhcccccccCCceeec
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e--l~~~~~~~~~~~n~~v~~~ 494 (835)
||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..++|++..+.+|++.+.
T Consensus 229 lLDEPtsgLD~~~~~~l~~-~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~ 288 (659)
T PLN03211 229 ILDEPTSGLDATAAYRLVL-TLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFF 288 (659)
T ss_pred EEeCCCCCcCHHHHHHHHH-HHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEE
Confidence 9999999999999999999 55566767899999999975 6789999999999998765
No 348
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.83 E-value=2.5e-20 Score=223.86 Aligned_cols=159 Identities=15% Similarity=0.164 Sum_probs=121.6
Q ss_pred CCeEEEeeeeeecC-Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhc--------ccceeecCCCCCC
Q 003258 324 NSEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNHPR 391 (835)
Q Consensus 324 ~~~l~~~~ls~~y~-~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma--------~~G~~vP~~~~~~ 391 (835)
.++++++||++.|+ ++.+ ++||++.+| ++++|+||||||||||+|+| |+..+-. ..-.++|++....
T Consensus 449 ~~~i~~~nv~~~~~~~~~il~~isl~i~~G-e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~ 527 (659)
T TIGR00954 449 DNGIKFENIPLVTPNGDVLIESLSFEVPSG-NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMT 527 (659)
T ss_pred CCeEEEEeeEEECCCCCeeeecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCC
Confidence 35799999999995 4344 999999999 99999999999999999999 5543211 1124667664100
Q ss_pred -chH----------------------HHHHHHHcCCcccccCC---------cccchHHHH-HHHHHHHHcCCCcEEEEe
Q 003258 392 -LPW----------------------FDLILADIGDHQSLEQN---------LSTFSGHIS-RIVDILELVSRESLVLID 438 (835)
Q Consensus 392 -i~~----------------------~d~i~~~ig~~~~~~~~---------lstfSgg~~-rl~~~~~la~~~~LlLLD 438 (835)
-++ +.+++..+|+.+.++++ ..+|||||+ |+++|++++.+|+++|||
T Consensus 528 ~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLD 607 (659)
T TIGR00954 528 LGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILD 607 (659)
T ss_pred CcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 011 22345555665544443 378999999 899999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccccc
Q 003258 439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (835)
Q Consensus 439 Ep~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~ 487 (835)
|||+|+|+.....+...+.+ .+.|+|++||+.++..+||+++.+.
T Consensus 608 Epts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 608 ECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKSLWKYHEYLLYMD 652 (659)
T ss_pred CCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchHHHHhCCEEEEEe
Confidence 99999999998888774433 3889999999999888899887764
No 349
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.83 E-value=2.7e-20 Score=220.63 Aligned_cols=167 Identities=11% Similarity=0.103 Sum_probs=123.6
Q ss_pred CeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------ccc
Q 003258 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (835)
Q Consensus 325 ~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~ 380 (835)
+.+.++|++++|++ .++ ++|+++++| +.++|+||||||||||++++ |+..+- .+.
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G-~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 390 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTLKPG-QMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSR 390 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEECCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhh
Confidence 35889999999964 334 999999999 99999999999999999999 443220 111
Q ss_pred ceeecCCCCC-CchHHH---------------HHHHHcCCc-----------ccccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 381 GLYLPAKNHP-RLPWFD---------------LILADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 381 G~~vP~~~~~-~i~~~d---------------~i~~~ig~~-----------~~~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
-.++|++... .-++.+ .++...+.. ..+......|||||+ |+++|++++.+|
T Consensus 391 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~ 470 (569)
T PRK10789 391 LAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNA 470 (569)
T ss_pred eEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 2344444310 001111 222222322 223345568999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+++||||||+++|+.....+...+.+ +. .+.|+|++||+.+....+|+++.+.+|++...
T Consensus 471 ~illlDEpts~LD~~~~~~i~~~l~~-~~-~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~ 530 (569)
T PRK10789 471 EILILDDALSAVDGRTEHQILHNLRQ-WG-EGRTVIISAHRLSALTEASEILVMQHGHIAQR 530 (569)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHH-Hh-CCCEEEEEecchhHHHcCCEEEEEeCCEEEEe
Confidence 99999999999999999999986554 43 47899999999987778999999999887643
No 350
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.83 E-value=2.8e-20 Score=225.87 Aligned_cols=166 Identities=17% Similarity=0.187 Sum_probs=126.0
Q ss_pred CeEEEeeeeeecCC-cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hcccc
Q 003258 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (835)
Q Consensus 325 ~~l~~~~ls~~y~~-~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~~G 381 (835)
+.++++||+|+|++ +++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+.-
T Consensus 472 ~~I~~~~vsf~y~~~~~iL~~isl~i~~G-~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 550 (708)
T TIGR01193 472 GDIVINDVSYSYGYGSNILSDISLTIKMN-SKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFI 550 (708)
T ss_pred CcEEEEEEEEEcCCCCcceeceeEEECCC-CEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence 46899999999963 444 999999999 99999999999999999999 44332 11122
Q ss_pred eeecCCCCC---------Cc------h--HHHHHHHHcCCc-----------ccccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 382 LYLPAKNHP---------RL------P--WFDLILADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 382 ~~vP~~~~~---------~i------~--~~d~i~~~ig~~-----------~~~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
.++|++... .+ + -+.+++...|.. -.+...-..|||||+ |+++|++++.+|
T Consensus 551 ~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p 630 (708)
T TIGR01193 551 NYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDS 630 (708)
T ss_pred EEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCC
Confidence 356655310 00 0 011222222322 223445678999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+++||||||+++|+.....+...+.+ + .++|+|++||+.+....||+++.+++|.+...
T Consensus 631 ~iliLDE~Ts~LD~~te~~i~~~L~~-~--~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 631 KVLILDESTSNLDTITEKKIVNNLLN-L--QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQ 689 (708)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHH-h--cCCEEEEEecchHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999886665 3 37899999999998889999999999987643
No 351
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.83 E-value=4.7e-20 Score=193.59 Aligned_cols=150 Identities=24% Similarity=0.310 Sum_probs=109.1
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHH-hhH---Hhhhhh--------ccc-ceeec--------------CCC----CC
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASM-KTL---GLASLM--------SKA-GLYLP--------------AKN----HP 390 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlL-K~i---Gli~~m--------a~~-G~~vP--------------~~~----~~ 390 (835)
++||++.+| ++++|+||||||||||+ .++ |-+.+. ... +++.| +.. ..
T Consensus 13 ~vsl~i~~G-e~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (226)
T cd03270 13 NVDVDIPRN-KLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKTTSRNP 91 (226)
T ss_pred cceeecCCC-cEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCCCCCCC
Confidence 999999999 99999999999999996 332 211100 000 01111 111 01
Q ss_pred --Cch-------HH------------HHHHHHcCCcc-cccCCcccchHHHH-HHHHHHHHcCCC--cEEEEeCCCCCCC
Q 003258 391 --RLP-------WF------------DLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTD 445 (835)
Q Consensus 391 --~i~-------~~------------d~i~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~~~--~LlLLDEp~~glD 445 (835)
.++ ++ .+.+..+|+.+ ..++++++|||||+ |++++++++.+| +++||||||+|+|
T Consensus 92 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD 171 (226)
T cd03270 92 RSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLH 171 (226)
T ss_pred CccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCC
Confidence 111 11 12344556665 47899999999999 899999999987 5999999999999
Q ss_pred HHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccc------cCCceee
Q 003258 446 PSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF------ENAATEF 493 (835)
Q Consensus 446 p~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~------~n~~v~~ 493 (835)
+.....+... +..+.+.|.|+|++||+.++..+|+++..+ .+|.+..
T Consensus 172 ~~~~~~l~~~-l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 172 PRDNDRLIET-LKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVA 224 (226)
T ss_pred HHHHHHHHHH-HHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEe
Confidence 9999999994 555666789999999999877799999998 6666554
No 352
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.83 E-value=3e-20 Score=220.47 Aligned_cols=167 Identities=14% Similarity=0.164 Sum_probs=125.3
Q ss_pred CeEEEeeeeeecCC---cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cc
Q 003258 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK 379 (835)
Q Consensus 325 ~~l~~~~ls~~y~~---~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~ 379 (835)
+.++++||+++|++ +.+ ++||++++| +.++|+||||||||||+|++ |+..+- .+
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~G-e~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 414 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPG-ETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCC-CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHH
Confidence 35889999999964 334 999999999 99999999999999999999 444321 11
Q ss_pred cceeecCCCCC-CchHHH---------------HHHHHcC-----------CcccccCCcccchHHHH-HHHHHHHHcCC
Q 003258 380 AGLYLPAKNHP-RLPWFD---------------LILADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 380 ~G~~vP~~~~~-~i~~~d---------------~i~~~ig-----------~~~~~~~~lstfSgg~~-rl~~~~~la~~ 431 (835)
.-.++|++... .-++.+ ..+...| ++..+......|||||+ |++++++++.+
T Consensus 415 ~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~ 494 (576)
T TIGR02204 415 RMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKD 494 (576)
T ss_pred hceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 22355555410 001111 2222222 22234455678999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
|+++||||||+++|+.....+...+.+ +. .+.|+|++||+.+....+|+++.+.+|++...
T Consensus 495 ~~ililDEpts~lD~~~~~~i~~~l~~-~~-~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~ 555 (576)
T TIGR02204 495 APILLLDEATSALDAESEQLVQQALET-LM-KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQ 555 (576)
T ss_pred CCeEEEeCcccccCHHHHHHHHHHHHH-Hh-CCCEEEEEecchHHHHhCCEEEEEECCEEEee
Confidence 999999999999999999888885544 43 37899999999998888999999999987643
No 353
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.82 E-value=4.6e-20 Score=223.48 Aligned_cols=166 Identities=16% Similarity=0.152 Sum_probs=125.9
Q ss_pred CeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hccc
Q 003258 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (835)
Q Consensus 325 ~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~~ 380 (835)
+.++++||+++|++ +.+ ++||++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G-~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~ 532 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPG-EFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ 532 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHh
Confidence 46899999999953 334 999999999 99999999999999999999 44322 0112
Q ss_pred ceeecCCCCCCc--hH---------------HHHHHHHcC-----------CcccccCCcccchHHHH-HHHHHHHHcCC
Q 003258 381 GLYLPAKNHPRL--PW---------------FDLILADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 381 G~~vP~~~~~~i--~~---------------~d~i~~~ig-----------~~~~~~~~lstfSgg~~-rl~~~~~la~~ 431 (835)
-.++|++.. -+ ++ +.+++...| .+..+......|||||+ |++++++++.+
T Consensus 533 i~~v~q~~~-lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~ 611 (694)
T TIGR01846 533 MGVVLQENV-LFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGN 611 (694)
T ss_pred CeEEccCCe-ehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 235555531 00 01 112222223 23334456678999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
|+++||||||+++|+.....+...+.+. . .++|+|++||+.+....||+++.+.+|++...
T Consensus 612 ~~ililDEpts~LD~~~~~~i~~~l~~~-~-~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~ 672 (694)
T TIGR01846 612 PRILIFDEATSALDYESEALIMRNMREI-C-RGRTVIIIAHRLSTVRACDRIIVLEKGQIAES 672 (694)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHH-h-CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999966554 3 47899999999987778999999999988654
No 354
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=5.8e-20 Score=208.73 Aligned_cols=166 Identities=18% Similarity=0.217 Sum_probs=124.3
Q ss_pred eEEEeeeeeecCCc-ee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hcccce
Q 003258 326 EMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGL 382 (835)
Q Consensus 326 ~l~~~~ls~~y~~~-~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~~G~ 382 (835)
.+..+|+++.|++. ++ ++|+++++| +.++|+||||||||||+..| |+... ..+.-.
T Consensus 320 ei~~~~l~~~y~~g~~~l~~l~~t~~~g-~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 320 EISLENLSFRYPDGKPALSDLNLTIKAG-QLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred eeeecceEEecCCCCcccCCceeEecCC-cEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 45567999999764 44 999999999 99999999999999999999 33331 001123
Q ss_pred eecCCCCCCc-hH---------------HHHHHHHcCC----------cccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 383 YLPAKNHPRL-PW---------------FDLILADIGD----------HQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 383 ~vP~~~~~~i-~~---------------~d~i~~~ig~----------~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
++|+++...- ++ +.+++...|+ +-.+..+-+.|||||+ |+++++++..+++++
T Consensus 399 ~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~ 478 (559)
T COG4988 399 WVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLL 478 (559)
T ss_pred eeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 4444431000 00 1222333333 3334455667999999 899999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
|+||||+|+|.++-..+..++.+ +.+ +.|+|++||+.+...-+|+++.+++|.+...
T Consensus 479 llDEpTA~LD~etE~~i~~~l~~-l~~-~ktvl~itHrl~~~~~~D~I~vld~G~l~~~ 535 (559)
T COG4988 479 LLDEPTAHLDAETEQIILQALQE-LAK-QKTVLVITHRLEDAADADRIVVLDNGRLVEQ 535 (559)
T ss_pred EecCCccCCCHhHHHHHHHHHHH-HHh-CCeEEEEEcChHHHhcCCEEEEecCCceecc
Confidence 99999999999999888885555 444 4899999999998889999999999988654
No 355
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.82 E-value=4.3e-20 Score=224.03 Aligned_cols=165 Identities=16% Similarity=0.143 Sum_probs=123.0
Q ss_pred CeEEEeeeeeecCC---cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hcc
Q 003258 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (835)
Q Consensus 325 ~~l~~~~ls~~y~~---~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~ 379 (835)
+.++++||+|+|++ +++ ++||++++| +.++|+||||||||||+|+| |+..+ +.+
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~G-e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPG-EVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 56899999999964 344 999999999 99999999999999999999 44332 111
Q ss_pred cceeecCCCCC-CchH---------------HHHHHHHcCCcc-----------cccCCcccchHHHH-HHHHHHHHcCC
Q 003258 380 AGLYLPAKNHP-RLPW---------------FDLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 380 ~G~~vP~~~~~-~i~~---------------~d~i~~~ig~~~-----------~~~~~lstfSgg~~-rl~~~~~la~~ 431 (835)
.-.++||+... .-++ +.+++...+..+ .+...-..|||||+ |+++|++++.+
T Consensus 556 ~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~ 635 (711)
T TIGR00958 556 QVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRK 635 (711)
T ss_pred hceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 22355655410 0001 222333333332 23334467999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
|+++||||||+++|+.....+.+ . ....+.|+|++||+.+....+|+++.+++|++...
T Consensus 636 p~ILILDEpTSaLD~~te~~i~~-~---~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~ 694 (711)
T TIGR00958 636 PRVLILDEATSALDAECEQLLQE-S---RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEM 694 (711)
T ss_pred CCEEEEEccccccCHHHHHHHHH-h---hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999988777766 1 22347899999999998888999999999988643
No 356
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.82 E-value=4.8e-20 Score=216.64 Aligned_cols=158 Identities=18% Similarity=0.238 Sum_probs=116.9
Q ss_pred CeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hccc
Q 003258 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (835)
Q Consensus 325 ~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~~ 380 (835)
+.++++||+|+|++ +++ ++|+++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 319 ~~i~~~~v~f~y~~~~~~il~~i~l~i~~G-~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPG-ERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred CeEEEEEEEEECCCCCcccccceeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 35899999999975 234 999999999 99999999999999999999 43322 0111
Q ss_pred ceeecCCCCC-CchH---------------HHHHHHHcCCccc-----------ccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 381 GLYLPAKNHP-RLPW---------------FDLILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 381 G~~vP~~~~~-~i~~---------------~d~i~~~ig~~~~-----------~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
-.++|++... .-++ +...+...+..+. +.....+|||||+ |++++++++.+|
T Consensus 398 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 398 IAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred eEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 2345555310 0011 2223333343322 2334578999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccc
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR 485 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~ 485 (835)
+++||||||+++|+.....+.+.+.+ +. .++|+|++||+.+....||+++.
T Consensus 478 ~ililDE~ts~lD~~~~~~i~~~l~~-~~-~~~t~i~itH~~~~~~~~d~i~~ 528 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVTEALRA-LA-QGRTVLLVTHRLALAERADRIVV 528 (529)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHH-hc-CCCEEEEEecCHHHHHhCCEEEe
Confidence 99999999999999999999986655 33 47899999999987777887653
No 357
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.81 E-value=3.4e-20 Score=204.88 Aligned_cols=139 Identities=17% Similarity=0.119 Sum_probs=108.2
Q ss_pred EEcCCCCChhhHHhhH-Hhhhhh-----------------cccceeecCCCC--CCchH---------------------
Q 003258 356 ITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAKNH--PRLPW--------------------- 394 (835)
Q Consensus 356 I~GpNGsGKSTlLK~i-Gli~~m-----------------a~~G~~vP~~~~--~~i~~--------------------- 394 (835)
|+||||||||||||+| |+..+. .+.-.|+|+... ..+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999 554321 011235565531 11122
Q ss_pred HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 003258 395 FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 395 ~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~ 473 (835)
++.++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 22346667887788999999999999 89999999999999999999999999999999995555444558999999999
Q ss_pred hh-HHhhhcccccccCCceeec
Q 003258 474 AD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 474 ~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
.+ +..+|+++..+.+|++...
T Consensus 161 ~~e~~~~~d~i~vl~~G~i~~~ 182 (325)
T TIGR01187 161 QEEAMTMSDRIAIMRKGKIAQI 182 (325)
T ss_pred HHHHHHhCCEEEEEECCEEEEE
Confidence 87 6779999999999988643
No 358
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.81 E-value=8.8e-20 Score=203.68 Aligned_cols=157 Identities=22% Similarity=0.308 Sum_probs=122.5
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchH----------
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW---------- 394 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~---------- 394 (835)
+.++|+++.|.+..+ +..|++.+| +.++|+|||||||||+|++| .|..+|......+-.
T Consensus 76 vk~~sls~s~~g~~l~kd~~~El~~g-~rygLiG~nG~Gkst~L~~i--------~~~e~P~p~~~d~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 76 VKIESLSLSFHGVELIKDVTLELNRG-RRYGLIGPNGSGKSTFLRAI--------AGREVPIPEHIDFYLLSREIEPSEK 146 (614)
T ss_pred ceeeeeeeccCCceeeeeeeEEecCC-ceEEEEcCCCCcHhHHHHHH--------hcCCCCCCcccchhhhcccCCCchH
Confidence 568899999987665 999999999 99999999999999999999 777777654211100
Q ss_pred -----------------------------------HH-------------------HHHHHcCC-cccccCCcccchHHH
Q 003258 395 -----------------------------------FD-------------------LILADIGD-HQSLEQNLSTFSGHI 419 (835)
Q Consensus 395 -----------------------------------~d-------------------~i~~~ig~-~~~~~~~lstfSgg~ 419 (835)
++ +++..+|. ...+.+.+..||||+
T Consensus 147 ~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 147 QAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchH
Confidence 00 11222222 234678899999999
Q ss_pred H-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCc-EEEEEecchh-HHhhhcccccccCCceeeccc
Q 003258 420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTTHYAD-LSCLKDKDTRFENAATEFSLE 496 (835)
Q Consensus 420 ~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~-~viitTH~~e-l~~~~~~~~~~~n~~v~~~~~ 496 (835)
+ |+++++++..+|+||||||||+|||+....- +-+||.+... ++++++|+.+ +..+|.+++.+.++...++.+
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~w----Lee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~G 302 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVW----LEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEG 302 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHH----HHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecC
Confidence 8 9999999999999999999999999975544 4456666566 8999999998 788999999998887665543
No 359
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=1.2e-19 Score=182.58 Aligned_cols=161 Identities=14% Similarity=0.225 Sum_probs=127.5
Q ss_pred eEEEeeeeeecCC-----cee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCC--------
Q 003258 326 EMTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP-------- 390 (835)
Q Consensus 326 ~l~~~~ls~~y~~-----~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~-------- 390 (835)
|+.+.|+.+-|.. +++ .+++++..| +++.|+|.||+|||||+++| +|-..|.+|..
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g-~FvtViGsNGAGKSTlln~i--------aG~l~~t~G~I~Idg~dVt 71 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEG-DFVTVIGSNGAGKSTLLNAI--------AGDLKPTSGQILIDGVDVT 71 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCC-ceEEEEcCCCccHHHHHHHh--------hCccccCCceEEECceecc
Confidence 3445555555532 223 899999999 99999999999999999999 66555555521
Q ss_pred ------------------------CchHHHH---------------------------HHHH--cCCcccccCCcccchH
Q 003258 391 ------------------------RLPWFDL---------------------------ILAD--IGDHQSLEQNLSTFSG 417 (835)
Q Consensus 391 ------------------------~i~~~d~---------------------------i~~~--ig~~~~~~~~lstfSg 417 (835)
.+++.++ -++. .|++..++.++.-|||
T Consensus 72 k~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSG 151 (263)
T COG1101 72 KKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSG 151 (263)
T ss_pred cCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccc
Confidence 1222222 2222 3566788899999999
Q ss_pred HHHH-HHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeecc
Q 003258 418 HISR-IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 495 (835)
Q Consensus 418 g~~r-l~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~~ 495 (835)
||+| ++++++.+++|.++||||-|+.|||.....++..--+...+.+.|.+++||.++ -..|.++.+.+++|.+..|.
T Consensus 152 GQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 152 GQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred hHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 9995 889999999999999999999999999999999776766777889999999987 56799999999999998874
No 360
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=4.4e-20 Score=191.77 Aligned_cols=162 Identities=23% Similarity=0.350 Sum_probs=131.9
Q ss_pred eeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------hcccceeecCCC--------
Q 003258 331 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------MSKAGLYLPAKN-------- 388 (835)
Q Consensus 331 ~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------ma~~G~~vP~~~-------- 388 (835)
|+.+.+|+..+.++|.++.. .+++|.|++|+||||++++| ||+.+ .+..|.++|...
T Consensus 5 ~~~~~lG~~~l~a~~~~p~~-GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQ 83 (352)
T COG4148 5 NFRQRLGNFALDANFTLPAR-GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83 (352)
T ss_pred ehhhhcCceEEEEeccCCCC-ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEee
Confidence 34556666667889998874 69999999999999999999 56543 122333333322
Q ss_pred --C-----------------CCchHHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHh
Q 003258 389 --H-----------------PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (835)
Q Consensus 389 --~-----------------~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~ 448 (835)
. +....||++...+|++..+++.+++||||++ |+++.+++++.|.|+|||||.+.||..-
T Consensus 84 DARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 84 DARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred ccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 0 0112389999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC-CcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 449 GVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 449 ~~aL~~all~~l~~~-~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
...|.- .++.|.+. +.-|+.+||.++ +.++|++++.++||++...
T Consensus 164 K~Eilp-ylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~ 210 (352)
T COG4148 164 KREILP-YLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKAS 210 (352)
T ss_pred hhHHHH-HHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEec
Confidence 999998 77777754 678999999975 8999999999999998754
No 361
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.80 E-value=2.2e-19 Score=211.05 Aligned_cols=146 Identities=22% Similarity=0.240 Sum_probs=108.4
Q ss_pred CeEEEeeeeeecCC-cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc-----------ccce
Q 003258 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS-----------KAGL 382 (835)
Q Consensus 325 ~~l~~~~ls~~y~~-~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma-----------~~G~ 382 (835)
+.++++||+|+|++ +++ ++||++++| +.++|+||||||||||+|++ |+..+ -+ +.-.
T Consensus 333 ~~I~~~~vsf~Y~~~~~vL~~isl~i~~G-~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~ 411 (529)
T TIGR02868 333 PTLELRDLSFGYPGSPPVLDGVSLDLPPG-ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRIS 411 (529)
T ss_pred ceEEEEEEEEecCCCCceeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheE
Confidence 45899999999975 344 999999999 99999999999999999999 44322 10 1223
Q ss_pred eecCCCCCCc--hH---------------HHHHHHHcCCcccc-----------cCCcccchHHHH-HHHHHHHHcCCCc
Q 003258 383 YLPAKNHPRL--PW---------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRES 433 (835)
Q Consensus 383 ~vP~~~~~~i--~~---------------~d~i~~~ig~~~~~-----------~~~lstfSgg~~-rl~~~~~la~~~~ 433 (835)
++||+.. -+ ++ +.+++...+..+.+ ...-..|||||+ |+++|++++.+|+
T Consensus 412 ~V~Q~~~-lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ 490 (529)
T TIGR02868 412 VFAQDAH-LFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAP 490 (529)
T ss_pred EEccCcc-cccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCC
Confidence 5666641 11 11 22233333433322 233467999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 003258 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~ 474 (835)
++||||||+++|+.....+...+.+. ..++|+|++||+.
T Consensus 491 iliLDE~TSaLD~~te~~I~~~l~~~--~~~~TvIiItHrl 529 (529)
T TIGR02868 491 ILLLDEPTEHLDAGTESELLEDLLAA--LSGKTVVVITHHL 529 (529)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHh--cCCCEEEEEecCC
Confidence 99999999999999999999866643 3368999999973
No 362
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=4e-19 Score=169.26 Aligned_cols=152 Identities=18% Similarity=0.191 Sum_probs=124.0
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh---------------------hccc
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSKA 380 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~---------------------ma~~ 380 (835)
+|+.++||+.+.++..+ ++|++|.+| +++-|+||+||||||||.-+ |.+.. -.|.
T Consensus 1 ~~l~l~nvsl~l~g~cLLa~~n~Tia~G-eivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~ 79 (213)
T COG4136 1 GMLCLKNVSLRLPGSCLLANVNFTIAKG-EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQI 79 (213)
T ss_pred CceeeeeeeecCCCceEEEeeeEEecCC-cEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhe
Confidence 47889999999988877 899999999 99999999999999999987 44321 1233
Q ss_pred ceeecCCC--CCCc--------------------hHHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEE
Q 003258 381 GLYLPAKN--HPRL--------------------PWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (835)
Q Consensus 381 G~~vP~~~--~~~i--------------------~~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLL 437 (835)
|.. .++. ...+ ...+..++++|+....++.+.|+|||++ |+++.+++...|.++||
T Consensus 80 GiL-FQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLL 158 (213)
T COG4136 80 GIL-FQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLL 158 (213)
T ss_pred eee-ecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeee
Confidence 321 1111 0011 1245568899999999999999999999 99999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh
Q 003258 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC 478 (835)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~ 478 (835)
|||++.||..-+....+-+...+...|.-+|.+|||++-..
T Consensus 159 DEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 159 DEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 99999999999999988888888888999999999976433
No 363
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.78 E-value=8.8e-19 Score=207.69 Aligned_cols=165 Identities=18% Similarity=0.225 Sum_probs=124.8
Q ss_pred CeEEEeeeeeecC-Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh--------------------hccc
Q 003258 325 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSKA 380 (835)
Q Consensus 325 ~~l~~~~ls~~y~-~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~--------------------ma~~ 380 (835)
+.++++||+|+|+ ++++ ++||++++| +.++|+||+||||||+++.+ ++..+ ..+.
T Consensus 327 ~~I~f~~vsf~y~~~~~vl~~is~~i~~G-e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 327 GSIEFENVSFSYPGKKPVLKDISFSIEPG-EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred CeEEEEEEEEEcCCCCccccCceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhc
Confidence 4589999999998 4555 899999999 99999999999999999999 22221 1223
Q ss_pred ceeecCCCCCCc--hHHHH---------------H---------HHHc--CCcccccCCcccchHHHH-HHHHHHHHcCC
Q 003258 381 GLYLPAKNHPRL--PWFDL---------------I---------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 381 G~~vP~~~~~~i--~~~d~---------------i---------~~~i--g~~~~~~~~lstfSgg~~-rl~~~~~la~~ 431 (835)
+ ++||+.. -+ ++.++ . +..+ |.+..+...-+.|||||+ |+++|++++.+
T Consensus 406 ~-~V~Qd~~-LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~ 483 (567)
T COG1132 406 G-IVSQDPL-LFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN 483 (567)
T ss_pred c-EEcccce-eecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 3 5555531 11 01111 1 1222 233344455678999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
|+++||||||+++|+..-..+.+++.+ +. ++.|+|+++|.......||+++.+++|++...
T Consensus 484 ~~ILILDEaTSalD~~tE~~I~~~l~~-l~-~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~ 544 (567)
T COG1132 484 PPILILDEATSALDTETEALIQDALKK-LL-KGRTTLIIAHRLSTIKNADRIIVLDNGRIVER 544 (567)
T ss_pred CCEEEEeccccccCHHhHHHHHHHHHH-Hh-cCCEEEEEeccHhHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999997764 44 35699999999886666999999999996543
No 364
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.78 E-value=6.6e-19 Score=225.97 Aligned_cols=170 Identities=16% Similarity=0.208 Sum_probs=133.5
Q ss_pred CCCeEEEeeeeeecC----Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh---hh---------------
Q 003258 323 ENSEMTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---LM--------------- 377 (835)
Q Consensus 323 g~~~l~~~~ls~~y~----~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~---~m--------------- 377 (835)
|..+++++||++.|+ ++.+ ++|+.+.+| ++++|+|||||||||||++| |++. +-
T Consensus 756 ~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~G-e~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~ 834 (1394)
T TIGR00956 756 GEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPG-TLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834 (1394)
T ss_pred CCceEEEEeeEEEecCCCCCcEeeeCCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhh
Confidence 344789999999984 3344 999999999 99999999999999999999 5543 11
Q ss_pred cccceeecCCCC--CCch------------------------HHHHHHHHcCCcccccCCcc----cchHHHH-HHHHHH
Q 003258 378 SKAGLYLPAKNH--PRLP------------------------WFDLILADIGDHQSLEQNLS----TFSGHIS-RIVDIL 426 (835)
Q Consensus 378 a~~G~~vP~~~~--~~i~------------------------~~d~i~~~ig~~~~~~~~ls----tfSgg~~-rl~~~~ 426 (835)
.+.-.|+|++.. ..++ .+++++..+|+.+..++.++ .|||||+ |+++++
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGV 914 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHH
Confidence 111246676531 0111 13456677787777777776 7999999 899999
Q ss_pred HHcCCCc-EEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh--HHhhhcccccccCC-ceeec
Q 003258 427 ELVSRES-LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENA-ATEFS 494 (835)
Q Consensus 427 ~la~~~~-LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e--l~~~~~~~~~~~n~-~v~~~ 494 (835)
+++.+|+ +|||||||+|||+.....+.. +++.+.+.|.|||+|||+.. +...+|+...+.+| ++.+.
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~-~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~ 985 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICK-LMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYF 985 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEE
Confidence 9999996 999999999999999999998 66667777899999999986 34678999999887 77654
No 365
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.78 E-value=8.2e-19 Score=225.45 Aligned_cols=164 Identities=12% Similarity=0.108 Sum_probs=121.6
Q ss_pred eEEEeeeeeecCCc---ee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------------cc
Q 003258 326 EMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SK 379 (835)
Q Consensus 326 ~l~~~~ls~~y~~~---~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------------a~ 379 (835)
.|+++||+|.|++. ++ ++||++++| ++++|+||||||||||+++| |+..+- .+
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~G-e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~ 460 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEG-KTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRS 460 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCC-CEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHH
Confidence 58999999999752 34 999999999 99999999999999999999 443210 01
Q ss_pred cceeecCCCCC-CchHHHHHH-----------------------------------------------------------
Q 003258 380 AGLYLPAKNHP-RLPWFDLIL----------------------------------------------------------- 399 (835)
Q Consensus 380 ~G~~vP~~~~~-~i~~~d~i~----------------------------------------------------------- 399 (835)
.-.++|++... ..++.+++.
T Consensus 461 ~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 540 (1466)
T PTZ00265 461 KIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKN 540 (1466)
T ss_pred hccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccc
Confidence 11245554310 001122221
Q ss_pred -------------HHcCCccc-----------ccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHH
Q 003258 400 -------------ADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALAT 454 (835)
Q Consensus 400 -------------~~ig~~~~-----------~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~ 454 (835)
..+++.+. +....+.|||||+ |+++|++++.+|++|||||||++||+.....+..
T Consensus 541 ~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~ 620 (1466)
T PTZ00265 541 YQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQK 620 (1466)
T ss_pred cccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 11222211 2456789999999 8999999999999999999999999999999988
Q ss_pred HHHHHHhcCCcEEEEEecchhHHhhhcccccccCCc
Q 003258 455 SILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA 490 (835)
Q Consensus 455 all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~ 490 (835)
++.+...+.|.|+|++||+.+....||+++.+.+|+
T Consensus 621 ~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 621 TINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRE 656 (1466)
T ss_pred HHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCc
Confidence 555443335889999999998778999999998864
No 366
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.77 E-value=1.7e-18 Score=178.11 Aligned_cols=137 Identities=18% Similarity=0.174 Sum_probs=102.4
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh--------------h------------hcccceeecCCCCCCch-
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--------------L------------MSKAGLYLPAKNHPRLP- 393 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~--------------~------------ma~~G~~vP~~~~~~i~- 393 (835)
++++++.+| +++|+||||+||||||++| |++. + .++. .++|+.....++
T Consensus 15 ~~~l~~~~g--~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~vfq~~~~~~~~ 91 (197)
T cd03278 15 KTTIPFPPG--LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEV-TLTFDNSDGRYSI 91 (197)
T ss_pred CeeeecCCC--cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEE-EEEEEcCCCceeE
Confidence 577888887 8999999999999999999 4431 0 0112 245554422221
Q ss_pred ----HHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHc----CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCC
Q 003258 394 ----WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV 464 (835)
Q Consensus 394 ----~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la----~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~ 464 (835)
-+++++.. .+..++.+.+||+||+ |++++++++ .+|+++|||||++|+|+.....+.. ++..+.+ +
T Consensus 92 ~~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~-~l~~~~~-~ 166 (197)
T cd03278 92 ISQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFAR-LLKEFSK-E 166 (197)
T ss_pred EehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHH-HHHHhcc-C
Confidence 13444544 4456788999999999 788888765 5779999999999999999999999 5555655 6
Q ss_pred cEEEEEecchhHHhhhcccccc
Q 003258 465 GLAVVTTHYADLSCLKDKDTRF 486 (835)
Q Consensus 465 ~~viitTH~~el~~~~~~~~~~ 486 (835)
.++|++||++++..+|++.+.+
T Consensus 167 ~tiIiitH~~~~~~~~d~v~~~ 188 (197)
T cd03278 167 TQFIVITHRKGTMEAADRLYGV 188 (197)
T ss_pred CEEEEEECCHHHHhhcceEEEE
Confidence 8999999999876788877654
No 367
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.77 E-value=4.3e-18 Score=189.31 Aligned_cols=162 Identities=25% Similarity=0.312 Sum_probs=128.1
Q ss_pred CCCeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchH----
Q 003258 323 ENSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW---- 394 (835)
Q Consensus 323 g~~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~---- 394 (835)
.++.+.++++++.=.+ +++ +++|.+.+| +.++|+||+|||||||.|++ .|...|.+|.+++..
T Consensus 331 P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G-~~lgIIGPSgSGKSTLaR~l--------vG~w~p~~G~VRLDga~l~ 401 (580)
T COG4618 331 PQGALSVERLTAAPPGQKKPILKGISFALQAG-EALGIIGPSGSGKSTLARLL--------VGIWPPTSGSVRLDGADLR 401 (580)
T ss_pred CCceeeEeeeeecCCCCCCcceecceeEecCC-ceEEEECCCCccHHHHHHHH--------HcccccCCCcEEecchhhh
Confidence 3467888888885533 233 999999999 99999999999999999999 555555554322211
Q ss_pred ------------------------HHHHHHHcC---------------------------CcccccCCcccchHHHH-HH
Q 003258 395 ------------------------FDLILADIG---------------------------DHQSLEQNLSTFSGHIS-RI 422 (835)
Q Consensus 395 ------------------------~d~i~~~ig---------------------------~~~~~~~~lstfSgg~~-rl 422 (835)
+.+-.++++ -+-.+-..-++|||||| |+
T Consensus 402 qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRI 481 (580)
T COG4618 402 QWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRI 481 (580)
T ss_pred cCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHH
Confidence 111122222 12234456689999999 89
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 423 ~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
.+++++-.+|.||+||||-++||...-.+|+.+|+. ++.+|+|+|++||-..+...+|++..+++|.+..+
T Consensus 482 aLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~-~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~F 552 (580)
T COG4618 482 ALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILA-AKARGGTVVVIAHRPSALASVDKILVLQDGRIAAF 552 (580)
T ss_pred HHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHH-HHHcCCEEEEEecCHHHHhhcceeeeecCChHHhc
Confidence 999999999999999999999999999999997766 67889999999999999999999999999988754
No 368
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=8.7e-19 Score=194.83 Aligned_cols=156 Identities=19% Similarity=0.226 Sum_probs=122.7
Q ss_pred CeEEEeeeeeecCCce--e--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCC------CCCchH
Q 003258 325 SEMTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN------HPRLPW 394 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~--v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~------~~~i~~ 394 (835)
+.+++.+|+|.|.... + .+++.++.. ..++++|+||.||||++|++ .|-.-|..+ ...+.+
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~-sRi~~vg~ng~gkst~lKi~--------~~~l~~~rgi~~~~~r~ri~~ 431 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESD-SRISRVGENGDGKSTLLKIL--------KGDLTPTRGIVGRHPRLRIKY 431 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchh-hhhheeccCchhHHHHHHHH--------hccCCcccceeeecccceecc
Confidence 4567888999995433 3 666666666 67899999999999999999 332222222 112221
Q ss_pred ------------------------------HHHHHHHcCCcc-cccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCC
Q 003258 395 ------------------------------FDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (835)
Q Consensus 395 ------------------------------~d~i~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~ 442 (835)
+..-+.++|+.. ...+++.+|||||+ |+++|.....+|.||+||||||
T Consensus 432 f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTN 511 (582)
T KOG0062|consen 432 FAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTN 511 (582)
T ss_pred hhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCc
Confidence 223366777654 45677899999999 9999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 443 glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
+||.++-.+|+.|+-.+ ++.||++|||.+ +..+|...|.+++|.|.-
T Consensus 512 hLD~dsl~AL~~Al~~F----~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 512 HLDRDSLGALAKALKNF----NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cccHHHHHHHHHHHHhc----CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 99999999999987776 899999999988 667999999999999864
No 369
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.76 E-value=2.2e-18 Score=221.59 Aligned_cols=166 Identities=14% Similarity=0.167 Sum_probs=122.8
Q ss_pred CeEEEeeeeeecCC---cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------------------
Q 003258 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 377 (835)
Q Consensus 325 ~~l~~~~ls~~y~~---~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------------- 377 (835)
+.++++||+|+|++ .+| ++||++++| +.++|+||+||||||++++| |+..+.
T Consensus 1164 g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G-~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSK-KTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred ceEEEEEEEEECCCCCCCccccCeeEEEcCC-CEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 46899999999963 345 999999999 99999999999999999999 444320
Q ss_pred ----------------------------------------------------cccceeecCCCCCCc--hHHHH------
Q 003258 378 ----------------------------------------------------SKAGLYLPAKNHPRL--PWFDL------ 397 (835)
Q Consensus 378 ----------------------------------------------------a~~G~~vP~~~~~~i--~~~d~------ 397 (835)
.+.-.+|||+.. -+ ++.++
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~-LF~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPM-LFNMSIYENIKFGKE 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCc-cccccHHHHHhcCCC
Confidence 001123444421 00 11122
Q ss_pred ---------HHHHcCCcc-----------cccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHH
Q 003258 398 ---------ILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSI 456 (835)
Q Consensus 398 ---------i~~~ig~~~-----------~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~al 456 (835)
+....+..+ .+...-..|||||+ |+++|++++.+|++|||||||++||+.....+..++
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 222223222 22334567999999 899999999999999999999999999999898866
Q ss_pred HHHHhcCCcEEEEEecchhHHhhhcccccccC----Ccee
Q 003258 457 LQYLRDRVGLAVVTTHYADLSCLKDKDTRFEN----AATE 492 (835)
Q Consensus 457 l~~l~~~~~~viitTH~~el~~~~~~~~~~~n----~~v~ 492 (835)
.+.....+.|+|++||.......||+++.+.+ |++.
T Consensus 1402 ~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv 1441 (1466)
T PTZ00265 1402 VDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFV 1441 (1466)
T ss_pred HHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEE
Confidence 55422357899999999998888999999998 7743
No 370
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.76 E-value=1.6e-18 Score=213.98 Aligned_cols=165 Identities=23% Similarity=0.296 Sum_probs=134.3
Q ss_pred CeEEEeeeeeecCCce--e-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh---------------------hcc
Q 003258 325 SEMTVGSLSKGISDFP--V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSK 379 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~--v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~---------------------ma~ 379 (835)
..+.++|+++.|+... | ++++.+++| +++++.||||+||||++|++ |...+ ..+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~g-ecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPG-ECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCC-ceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 4678899999998764 6 999999999 99999999999999999998 33322 111
Q ss_pred cceeecCCCCCCch------------------------HHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcE
Q 003258 380 AGLYLPAKNHPRLP------------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (835)
Q Consensus 380 ~G~~vP~~~~~~i~------------------------~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~L 434 (835)
+| |.||.. +-++ .++.++..+|+....++..+++|||++ |++.+.+++.+|++
T Consensus 642 iG-yCPQ~d-~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~v 719 (885)
T KOG0059|consen 642 LG-YCPQFD-ALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSV 719 (885)
T ss_pred cc-cCCchh-hhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCE
Confidence 22 444442 1110 134556778888899999999999999 79999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
|+||||++|+||..+..+.. ++..+.+.+..+|+|||.++ -..+|++...+.+|++..
T Consensus 720 i~LDEPstGmDP~arr~lW~-ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~c 778 (885)
T KOG0059|consen 720 ILLDEPSTGLDPKARRHLWD-IIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRC 778 (885)
T ss_pred EEecCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEE
Confidence 99999999999999888888 77777776669999999988 566999999999998875
No 371
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.76 E-value=2.3e-18 Score=209.27 Aligned_cols=159 Identities=19% Similarity=0.241 Sum_probs=122.8
Q ss_pred CCCeEEEeeeeeecCCce---e--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCch----
Q 003258 323 ENSEMTVGSLSKGISDFP---V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP---- 393 (835)
Q Consensus 323 g~~~l~~~~ls~~y~~~~---v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~---- 393 (835)
-++.++++||+|+|+.++ + ++||.+++| +.++|+||+||||||+++.+ .++|-|.+|...+.
T Consensus 347 ~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G-~~valVG~SGsGKST~i~LL--------~RfydP~~G~V~idG~di 417 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSG-QTVALVGPSGSGKSTLIQLL--------ARFYDPTSGEVLIDGEDI 417 (1228)
T ss_pred cccceEEEEEEecCCCCCcchhhCCeEEEeCCC-CEEEEECCCCCCHHHHHHHH--------HHhcCCCCceEEEcCccc
Confidence 457899999999998765 3 899999999 99999999999999999999 77777777632221
Q ss_pred -------------------------HHHHHH---------------HHc-----------CCcccccCCcccchHHHH-H
Q 003258 394 -------------------------WFDLIL---------------ADI-----------GDHQSLEQNLSTFSGHIS-R 421 (835)
Q Consensus 394 -------------------------~~d~i~---------------~~i-----------g~~~~~~~~lstfSgg~~-r 421 (835)
+.++|. ... |.+-.+-..--+|||||+ |
T Consensus 418 ~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQR 497 (1228)
T KOG0055|consen 418 RNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQR 497 (1228)
T ss_pred hhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHH
Confidence 111211 000 111111223345999999 8
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCcee
Q 003258 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATE 492 (835)
Q Consensus 422 l~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~ 492 (835)
+++|++++.+|.+|||||||++||+.+...+..|+ +.... |.|+|+++|.+..-+-+|.++.+++|++.
T Consensus 498 IAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~AL-d~~~~-grTTivVaHRLStIrnaD~I~v~~~G~Iv 566 (1228)
T KOG0055|consen 498 IAIARALVRNPKILLLDEATSALDAESERVVQEAL-DKASK-GRTTIVVAHRLSTIRNADKIAVMEEGKIV 566 (1228)
T ss_pred HHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHH-HHhhc-CCeEEEEeeehhhhhccCEEEEEECCEEE
Confidence 99999999999999999999999999988888855 44333 77999999999866669999999999865
No 372
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.1e-18 Score=189.22 Aligned_cols=154 Identities=23% Similarity=0.315 Sum_probs=121.3
Q ss_pred CeEEEeeeeeecCC-cee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC------CCchHH
Q 003258 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------PRLPWF 395 (835)
Q Consensus 325 ~~l~~~~ls~~y~~-~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~------~~i~~~ 395 (835)
+++-+.+|+|+|.+ +++ .++|-|+-. ..++|+||||.||||||+.+ .|-.-|..|. ..+++|
T Consensus 585 PvLGlH~VtFgy~gqkpLFkkldFGiDmd-SRiaIVGPNGVGKSTlLkLL--------~Gkl~P~~GE~RKnhrL~iG~F 655 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQKPLFKKLDFGIDMD-SRIAIVGPNGVGKSTLLKLL--------IGKLDPNDGELRKNHRLRIGWF 655 (807)
T ss_pred CeeecccccccCCCCCchhhccccccccc-ceeEEECCCCccHHHHHHHH--------hcCCCCCcchhhccceeeeech
Confidence 56778999999954 444 888888877 78999999999999999999 8877787762 345666
Q ss_pred HHH-----------------------------HHHcCCcccc-cCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCC
Q 003258 396 DLI-----------------------------LADIGDHQSL-EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (835)
Q Consensus 396 d~i-----------------------------~~~ig~~~~~-~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~gl 444 (835)
++- +-.+|+.... .-.+..||||++ |++++-..+..|++|||||||++|
T Consensus 656 dQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNL 735 (807)
T KOG0066|consen 656 DQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNL 735 (807)
T ss_pred hhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCc
Confidence 532 2334443322 246789999999 999998788999999999999999
Q ss_pred CHHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCce
Q 003258 445 DPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAAT 491 (835)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~viitTH~~el-~~~~~~~~~~~n~~v 491 (835)
|+.+..+|+.||-+| .+.||++|||..+ ...-...+.++|..+
T Consensus 736 DIESIDALaEAIney----~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 736 DIESIDALAEAINEY----NGGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred chhhHHHHHHHHHhc----cCcEEEEecccceeeecCceEEEEccCCh
Confidence 999999999999998 8999999999763 334445566666554
No 373
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.76 E-value=5.8e-18 Score=176.07 Aligned_cols=161 Identities=19% Similarity=0.196 Sum_probs=107.5
Q ss_pred eEEEeeeeeecCCceeccceeec-CCceEEEEEcCCCCChhhHHhhHH-hh-hhh-------------------ccccee
Q 003258 326 EMTVGSLSKGISDFPVPIDIKVE-CETRVVVITGPNTGGKTASMKTLG-LA-SLM-------------------SKAGLY 383 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v~isl~l~-~g~~~~~I~GpNGsGKSTlLK~iG-li-~~m-------------------a~~G~~ 383 (835)
.|+++|+. +|.+. ..++|... +| ++++|+|||||||||+|++|. .+ -.. +..+ +
T Consensus 5 ~i~l~nf~-~y~~~-~~i~~~~~~~~-~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~-~ 80 (213)
T cd03279 5 KLELKNFG-PFREE-QVIDFTGLDNN-GLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVS-F 80 (213)
T ss_pred EEEEECCc-CcCCc-eEEeCCCCCcc-CEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEE-E
Confidence 35677777 54332 23444433 35 799999999999999999992 11 000 0001 1
Q ss_pred ecCCCCC--------Cch--HHHHH--HHHcCCcccccCCcccchHHHH-HHHHHHHHcC----------CCcEEEEeCC
Q 003258 384 LPAKNHP--------RLP--WFDLI--LADIGDHQSLEQNLSTFSGHIS-RIVDILELVS----------RESLVLIDEI 440 (835)
Q Consensus 384 vP~~~~~--------~i~--~~d~i--~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~----------~~~LlLLDEp 440 (835)
+++.... .++ .+.+. +...+....+++++.+||+||+ |++++++++. +|+++|||||
T Consensus 81 ~f~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp 160 (213)
T cd03279 81 TFQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEG 160 (213)
T ss_pred EEEECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCC
Confidence 1111100 001 12221 1222345677899999999999 7888888864 5789999999
Q ss_pred CCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCce
Q 003258 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAAT 491 (835)
Q Consensus 441 ~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v 491 (835)
++|+|+.....+.. ++..+.+.+.|+|++||+++ +..+++....+.+|.+
T Consensus 161 ~~~lD~~~~~~~~~-~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 161 FGTLDPEALEAVAT-ALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred cccCCHHHHHHHHH-HHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 99999999999988 55566666889999999988 5567777777777653
No 374
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.4e-18 Score=197.89 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=125.8
Q ss_pred CCeEEEeeeeeecCCce---e--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCch-----
Q 003258 324 NSEMTVGSLSKGISDFP---V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP----- 393 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~---v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~----- 393 (835)
.|.++++||+|.|+.++ | ++||+|++| ++++|+||||+||||+...+ --+|.|++|...+.
T Consensus 463 ~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pG-e~vALVGPSGsGKSTiasLL--------~rfY~PtsG~IllDG~~i~ 533 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPG-EVVALVGPSGSGKSTIASLL--------LRFYDPTSGRILLDGVPIS 533 (716)
T ss_pred cceEEEEEeeeecCCCCCchhhcCceeeeCCC-CEEEEECCCCCCHHHHHHHH--------HHhcCCCCCeEEECCeehh
Confidence 47899999999997653 4 999999999 99999999999999999999 66666666632211
Q ss_pred ------------------------HHHHHH------------------------HHc--CCcccccCCcccchHHHH-HH
Q 003258 394 ------------------------WFDLIL------------------------ADI--GDHQSLEQNLSTFSGHIS-RI 422 (835)
Q Consensus 394 ------------------------~~d~i~------------------------~~i--g~~~~~~~~lstfSgg~~-rl 422 (835)
+-++|. ..+ |-+-.+...-++|||||| |+
T Consensus 534 ~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRI 613 (716)
T KOG0058|consen 534 DINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRI 613 (716)
T ss_pred hcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHH
Confidence 112221 111 111223455679999999 89
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 423 ~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
++|+++..+|.+|||||-||.||.++-..+.+++-+. .+ +.|||++.|.+...+-|+.+..+++|++...
T Consensus 614 AIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~-~~-~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~ 683 (716)
T KOG0058|consen 614 AIARALLRNPRVLILDEATSALDAESEYLVQEALDRL-MQ-GRTVLVIAHRLSTVRHADQIVVIDKGRVVEM 683 (716)
T ss_pred HHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHh-hc-CCeEEEEehhhhHhhhccEEEEEcCCeEEec
Confidence 9999999999999999999999999888887755443 33 4899999999998889999999999998754
No 375
>PLN03140 ABC transporter G family member; Provisional
Probab=99.75 E-value=5.2e-18 Score=217.30 Aligned_cols=167 Identities=17% Similarity=0.214 Sum_probs=129.0
Q ss_pred eEEEeeeeeecC-------------Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh---------hh---
Q 003258 326 EMTVGSLSKGIS-------------DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---------LM--- 377 (835)
Q Consensus 326 ~l~~~~ls~~y~-------------~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~---------~m--- 377 (835)
.+..+||++... ++.+ ++|+.+.+| ++++|+|||||||||||++| |+.. +.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~G-el~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPG-VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECC-eEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 478899987752 2234 999999999 99999999999999999999 5432 10
Q ss_pred ------cccceeecCCCC--CCchH------------------------HHHHHHHcCCcccccCCc-----ccchHHHH
Q 003258 378 ------SKAGLYLPAKNH--PRLPW------------------------FDLILADIGDHQSLEQNL-----STFSGHIS 420 (835)
Q Consensus 378 ------a~~G~~vP~~~~--~~i~~------------------------~d~i~~~ig~~~~~~~~l-----stfSgg~~ 420 (835)
.+.-.|+|+... ..+++ +++++..+|+.+..++.+ +.|||||+
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence 111236666531 11111 345666777776666664 68999999
Q ss_pred -HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh--HHhhhcccccccC-Cceeec
Q 003258 421 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFEN-AATEFS 494 (835)
Q Consensus 421 -rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e--l~~~~~~~~~~~n-~~v~~~ 494 (835)
|+.++++++.+|+++||||||+|||+.....+.. ++..+.+.|.|||+|||+.. +..++|+...+.+ |++.+.
T Consensus 1026 kRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~-~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 8999999999999999999999999999999998 55667777899999999975 5678999999986 777654
No 376
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.75 E-value=3.6e-18 Score=204.05 Aligned_cols=152 Identities=20% Similarity=0.241 Sum_probs=122.0
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cccceeecCCCC--CCchH-----
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYLPAKNH--PRLPW----- 394 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G~~vP~~~~--~~i~~----- 394 (835)
++|+++.+| ++++|+|||||||||||++| |....- .+.-.|+|++.. ..+++
T Consensus 43 ~vs~~i~~G-e~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~ 121 (617)
T TIGR00955 43 NVSGVAKPG-ELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLM 121 (617)
T ss_pred CCEEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHH
Confidence 999999999 99999999999999999999 544220 011246676641 01111
Q ss_pred -------------------HHHHHHHcCCcccccCCcc------cchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHh
Q 003258 395 -------------------FDLILADIGDHQSLEQNLS------TFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (835)
Q Consensus 395 -------------------~d~i~~~ig~~~~~~~~ls------tfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~ 448 (835)
++.++..+|+.+..+..+. .|||||+ |++++++++.+|++++|||||+|||+..
T Consensus 122 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~ 201 (617)
T TIGR00955 122 FQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFM 201 (617)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHH
Confidence 4556777787766666665 5999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecch--hHHhhhcccccccCCceeecc
Q 003258 449 GVALATSILQYLRDRVGLAVVTTHYA--DLSCLKDKDTRFENAATEFSL 495 (835)
Q Consensus 449 ~~aL~~all~~l~~~~~~viitTH~~--el~~~~~~~~~~~n~~v~~~~ 495 (835)
...+.. +++.+.+.|.|+|++||+. ++..++|+...+.+|++.+..
T Consensus 202 ~~~l~~-~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G 249 (617)
T TIGR00955 202 AYSVVQ-VLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLG 249 (617)
T ss_pred HHHHHH-HHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEEC
Confidence 999999 5556676789999999996 478899999999999988763
No 377
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.75 E-value=6.4e-18 Score=219.10 Aligned_cols=167 Identities=16% Similarity=0.162 Sum_probs=127.6
Q ss_pred CeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------cccceeecCCCCC-C
Q 003258 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKAGLYLPAKNHP-R 391 (835)
Q Consensus 325 ~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a~~G~~vP~~~~~-~ 391 (835)
+.++++|+++.|++ +++ ++||++++| ++++|+|||||||||||++| |++.+. .+ -.|+|++... .
T Consensus 635 ~~i~~~~~~~~~~~~~~~~l~~isl~i~~G-~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-i~yv~Q~~~l~~ 712 (1522)
T TIGR00957 635 NSITVHNATFTWARDLPPTLNGITFSIPEG-ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS-VAYVPQQAWIQN 712 (1522)
T ss_pred CcEEEEEeEEEcCCCCCceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCE-EEEEcCCccccC
Confidence 37999999999974 334 999999999 99999999999999999999 554331 12 2367776421 0
Q ss_pred chH--------------HHHHHHH------c-----CCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCC
Q 003258 392 LPW--------------FDLILAD------I-----GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (835)
Q Consensus 392 i~~--------------~d~i~~~------i-----g~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glD 445 (835)
.++ ++++... + |+...+.....+|||||+ |+++|+++..+|+++||||||+++|
T Consensus 713 ~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD 792 (1522)
T TIGR00957 713 DSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792 (1522)
T ss_pred CcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 011 1222221 1 222345667889999999 8999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHH-hcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 446 PSEGVALATSILQYL-RDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 446 p~~~~aL~~all~~l-~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
+.....+...+.... ..++.|+|++||+.+....||+++.+.+|.+..
T Consensus 793 ~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~ 841 (1522)
T TIGR00957 793 AHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISE 841 (1522)
T ss_pred HHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEe
Confidence 999999998776421 124689999999998777799999999988754
No 378
>PLN03232 ABC transporter C family member; Provisional
Probab=99.74 E-value=6.1e-18 Score=219.01 Aligned_cols=165 Identities=14% Similarity=0.123 Sum_probs=126.3
Q ss_pred CeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hccc
Q 003258 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (835)
Q Consensus 325 ~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~~ 380 (835)
+.|+++||+++|++ +++ ++||++++| +.++|+||+|||||||++++ |++.+ +.+.
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~G-ekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPS-EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhh
Confidence 57999999999953 345 999999999 99999999999999999999 33321 1122
Q ss_pred ceeecCCCCCCch--H--------------HHHHHHHcCCc-----------ccccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 381 GLYLPAKNHPRLP--W--------------FDLILADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 381 G~~vP~~~~~~i~--~--------------~d~i~~~ig~~-----------~~~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
-.++||++. -++ + +.+++...++. ..+...-+.|||||| |+++|++++.+|
T Consensus 1312 i~iVpQdp~-LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~ 1390 (1495)
T PLN03232 1312 LSIIPQSPV-LFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS 1390 (1495)
T ss_pred cEEECCCCe-eeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 346777641 110 0 12233333332 233445578999999 799999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
++|||||||+++|+..-..|..++.+.+ .++|+|++||..+....||+++.+++|++..
T Consensus 1391 ~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE 1449 (1495)
T PLN03232 1391 KILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLNTIIDCDKILVLSSGQVLE 1449 (1495)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999888888665543 3789999999999777799999999998864
No 379
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=6.7e-18 Score=164.01 Aligned_cols=152 Identities=20% Similarity=0.338 Sum_probs=120.0
Q ss_pred eEEEeeeeeec-----CCc--ee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC-------
Q 003258 326 EMTVGSLSKGI-----SDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------- 389 (835)
Q Consensus 326 ~l~~~~ls~~y-----~~~--~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~------- 389 (835)
++.++|++|+| ++. +| ++||++..| +++++-||+|+||||+||++ .|-|.|.+|.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aG-ECvvL~G~SG~GKStllr~L--------YaNY~~d~G~I~v~H~g 74 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAG-ECVVLHGPSGSGKSTLLRSL--------YANYLPDEGQILVRHEG 74 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCc-cEEEeeCCCCCcHHHHHHHH--------HhccCCCCceEEEEeCc
Confidence 46678888877 232 23 899999999 99999999999999999999 6666666652
Q ss_pred ------------------CCchHHH----------------------------------HHHHHcCCcc-cccCCcccch
Q 003258 390 ------------------PRLPWFD----------------------------------LILADIGDHQ-SLEQNLSTFS 416 (835)
Q Consensus 390 ------------------~~i~~~d----------------------------------~i~~~ig~~~-~~~~~lstfS 416 (835)
..++|+. .+++++++.+ ...-.++|||
T Consensus 75 ~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFS 154 (235)
T COG4778 75 EWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFS 154 (235)
T ss_pred chhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccC
Confidence 1222322 2345555443 3456889999
Q ss_pred HHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhccccccc
Q 003258 417 GHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFE 487 (835)
Q Consensus 417 gg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~-~~~~~~~~~~ 487 (835)
||++ |+.+++.++.+-+++||||||+.||...+..+.+ ++..-+.+|+.+|=+=||.+.. .+||+...+.
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVve-li~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVE-LIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHH-HHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 9988 8999999999999999999999999999999998 7777788899999999999865 4788776554
No 380
>PLN03130 ABC transporter C family member; Provisional
Probab=99.74 E-value=6.6e-18 Score=219.04 Aligned_cols=166 Identities=13% Similarity=0.126 Sum_probs=126.9
Q ss_pred CCeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh-------h------------hcc
Q 003258 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-------L------------MSK 379 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~-------~------------ma~ 379 (835)
.|.|+++||+++|++ .+| ++||++++| +.++|+||+|||||||++++ |++. + +.+
T Consensus 1235 ~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~G-ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130 1235 SGSIKFEDVVLRYRPELPPVLHGLSFEISPS-EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred CCcEEEEEEEEEeCCCCCceecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHh
Confidence 357999999999964 245 999999999 99999999999999999999 3322 1 112
Q ss_pred cceeecCCCCCCch--H--------------HHHHHHHcCC-----------cccccCCcccchHHHH-HHHHHHHHcCC
Q 003258 380 AGLYLPAKNHPRLP--W--------------FDLILADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 380 ~G~~vP~~~~~~i~--~--------------~d~i~~~ig~-----------~~~~~~~lstfSgg~~-rl~~~~~la~~ 431 (835)
.-.++||++. -+. + +.+++...++ +..+..+-+.|||||| |+++|++++.+
T Consensus 1314 ~IsiVpQdp~-LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~ 1392 (1622)
T PLN03130 1314 VLGIIPQAPV-LFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392 (1622)
T ss_pred ccEEECCCCc-cccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 2346777651 111 1 1122333333 2334445578999999 79999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
|++|||||||+++|+..-..|..++.+.+ .++|+|+++|..+...-||+++.+++|++..
T Consensus 1393 p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE 1452 (1622)
T PLN03130 1393 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILVLDAGRVVE 1452 (1622)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999888888665543 3789999999999777799999999998864
No 381
>PLN03232 ABC transporter C family member; Provisional
Probab=99.74 E-value=1.3e-17 Score=216.04 Aligned_cols=167 Identities=14% Similarity=0.125 Sum_probs=126.8
Q ss_pred CeEEEeeeeeecCC---cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------cccceeecCCCCC-
Q 003258 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKAGLYLPAKNHP- 390 (835)
Q Consensus 325 ~~l~~~~ls~~y~~---~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a~~G~~vP~~~~~- 390 (835)
+.++++|++|+|++ +++ ++||++++| +.++|+||+|||||||+++| |...+. ...-.|+||+...
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~G-e~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf 691 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVG-SLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIF 691 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccc
Confidence 46899999999964 344 999999999 99999999999999999999 444332 1222466666411
Q ss_pred CchH--------------HHHHHHHcCCcc-----------cccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCC
Q 003258 391 RLPW--------------FDLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (835)
Q Consensus 391 ~i~~--------------~d~i~~~ig~~~-----------~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~gl 444 (835)
.-++ +.+++...++.+ .+..+-.+|||||| |+++|+++..+|+++||||||+++
T Consensus 692 ~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaL 771 (1495)
T PLN03232 692 NATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSAL 771 (1495)
T ss_pred cccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 0011 223333333322 33344568999999 899999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 445 DPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
|+.....+...++..+. .+.|+|++||.......+|+++.+++|++..
T Consensus 772 D~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~ 819 (1495)
T PLN03232 772 DAHVAHQVFDSCMKDEL-KGKTRVLVTNQLHFLPLMDRIILVSEGMIKE 819 (1495)
T ss_pred CHHHHHHHHHHHhhhhh-cCCEEEEEECChhhHHhCCEEEEEeCCEEEE
Confidence 99999988776665443 4789999999998888899999999987753
No 382
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.73 E-value=2.5e-17 Score=175.88 Aligned_cols=95 Identities=29% Similarity=0.273 Sum_probs=81.0
Q ss_pred HHHcCCcc-cccCCcccchHHHH-HHHHHHHHcCC---CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 003258 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 399 ~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~~---~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~ 473 (835)
+..+|+.. .+++.+++|||||+ |+.++++++.+ |+++||||||+|||+.+...+.. ++..+.+.|.|+|++||+
T Consensus 153 L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~-~L~~l~~~g~tvIiitH~ 231 (261)
T cd03271 153 LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLE-VLQRLVDKGNTVVVIEHN 231 (261)
T ss_pred HHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCC
Confidence 45678776 57999999999999 89999999885 79999999999999999999999 566677778999999999
Q ss_pred hhHHhhhcccccc------cCCceeec
Q 003258 474 ADLSCLKDKDTRF------ENAATEFS 494 (835)
Q Consensus 474 ~el~~~~~~~~~~------~n~~v~~~ 494 (835)
+++...|++++.+ .+|++.+.
T Consensus 232 ~~~i~~aD~ii~Lgp~~g~~~G~iv~~ 258 (261)
T cd03271 232 LDVIKCADWIIDLGPEGGDGGGQVVAS 258 (261)
T ss_pred HHHHHhCCEEEEecCCcCCCCCEEEEe
Confidence 9877789998888 56666543
No 383
>PTZ00243 ABC transporter; Provisional
Probab=99.73 E-value=1.1e-17 Score=216.58 Aligned_cols=166 Identities=13% Similarity=0.164 Sum_probs=127.4
Q ss_pred CCeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hcc
Q 003258 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~ 379 (835)
.|.|+++||+++|++ ..+ ++||++.+| +.++|+|++|||||||++++ |+..+ +.+
T Consensus 1306 ~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~G-ekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243 1306 AGSLVFEGVQMRYREGLPLVLRGVSFRIAPR-EKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred CCeEEEEEEEEEeCCCCCceeecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHh
Confidence 367999999999964 334 999999999 99999999999999999999 33321 123
Q ss_pred cceeecCCCCCCch--H--------------HHHHHHHcCCccc-----------ccCCcccchHHHH-HHHHHHHHcCC
Q 003258 380 AGLYLPAKNHPRLP--W--------------FDLILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 380 ~G~~vP~~~~~~i~--~--------------~d~i~~~ig~~~~-----------~~~~lstfSgg~~-rl~~~~~la~~ 431 (835)
.-.++||++. -++ + +.+++...|+.+. +..+-+.|||||+ |+++|++++.+
T Consensus 1385 ~I~iVpQdp~-LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1385 QFSMIPQDPV-LFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred cceEECCCCc-cccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 3346777752 111 1 2233444444332 2334478999999 79999999985
Q ss_pred -CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 432 -ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 432 -~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
|++|||||||+++|+..-..|...+.+.+ .++|+|+++|..+....||+++.+++|.+..
T Consensus 1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE 1524 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLHTVAQYDKIIVMDHGAVAE 1524 (1560)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 89999999999999999999988665543 3689999999999888899999999998764
No 384
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.73 E-value=1.4e-17 Score=215.51 Aligned_cols=164 Identities=18% Similarity=0.129 Sum_probs=120.4
Q ss_pred eEEEeeeeeecCCcee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------cccceeecCCCCC-CchHH
Q 003258 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKAGLYLPAKNHP-RLPWF 395 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a~~G~~vP~~~~~-~i~~~ 395 (835)
.+.++|+++.+. ..+ ++||++++| ++++|+|||||||||||++| |++.+. +. -.|+|+.... ..++.
T Consensus 428 ~~~~~~~s~~~~-~~l~~i~l~i~~G-~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~-iayv~Q~~~l~~~Ti~ 504 (1490)
T TIGR01271 428 GLFFSNFSLYVT-PVLKNISFKLEKG-QLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR-ISFSPQTSWIMPGTIK 504 (1490)
T ss_pred cccccccccccC-cceeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE-EEEEeCCCccCCccHH
Confidence 345556655431 223 999999999 99999999999999999999 555432 11 1366666421 01122
Q ss_pred HHH--------------HHHcC-----------CcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhH
Q 003258 396 DLI--------------LADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (835)
Q Consensus 396 d~i--------------~~~ig-----------~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~ 449 (835)
++| +...+ +...+.....+|||||+ |+++|++++.+|+++|||||++++|+..+
T Consensus 505 eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~ 584 (1490)
T TIGR01271 505 DNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTE 584 (1490)
T ss_pred HHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 222 21111 11224456789999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 450 VALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 450 ~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
..+...++..+.+ +.|+|++||+++....||+++.+.+|.+..
T Consensus 585 ~~i~~~~l~~~~~-~~tvilvtH~~~~~~~ad~ii~l~~g~i~~ 627 (1490)
T TIGR01271 585 KEIFESCLCKLMS-NKTRILVTSKLEHLKKADKILLLHEGVCYF 627 (1490)
T ss_pred HHHHHHHHHHHhc-CCeEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 9999865555543 789999999998667799999999987753
No 385
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.72 E-value=3.7e-17 Score=177.15 Aligned_cols=167 Identities=16% Similarity=0.185 Sum_probs=129.7
Q ss_pred CeEEEeeeeeecC----Cc-ee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhc-------------------
Q 003258 325 SEMTVGSLSKGIS----DF-PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------- 378 (835)
Q Consensus 325 ~~l~~~~ls~~y~----~~-~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma------------------- 378 (835)
..+.++|++..|. .. .| ++||.+..| +.++|+|.+|||||++...| +|+..-+
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~G-EtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAG-ETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCC-CEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 4678999999985 22 23 999999999 99999999999999998887 6654310
Q ss_pred ---------ccceeecCCCCCCchH--------------------------HHHHHHHcCCcc---cccCCcccchHHHH
Q 003258 379 ---------KAGLYLPAKNHPRLPW--------------------------FDLILADIGDHQ---SLEQNLSTFSGHIS 420 (835)
Q Consensus 379 ---------~~G~~vP~~~~~~i~~--------------------------~d~i~~~ig~~~---~~~~~lstfSgg~~ 420 (835)
.-...+++++-..+.. .-+++..+|+.+ .++.++..||||++
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR 163 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence 0011233333222221 113466677654 57889999999999
Q ss_pred -HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHh-cCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 421 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 421 -rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~-~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
|+.++++++++|+|||.||||..||..-.+.|.+ ++..|. +.|..++++|||+. +..++|++..+..|.+.-
T Consensus 164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~-Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILD-LLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHH-HHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee
Confidence 8889999999999999999999999999999999 555554 56899999999998 677999999999887753
No 386
>PLN03130 ABC transporter C family member; Provisional
Probab=99.72 E-value=1.9e-17 Score=214.91 Aligned_cols=167 Identities=15% Similarity=0.146 Sum_probs=128.0
Q ss_pred CeEEEeeeeeecCC---cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhc-------ccceeecCCCCC-
Q 003258 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------KAGLYLPAKNHP- 390 (835)
Q Consensus 325 ~~l~~~~ls~~y~~---~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma-------~~G~~vP~~~~~- 390 (835)
+.++++|++|+|++ +++ ++||++++| +.++|+||+||||||||++| |.+.+.. ..-.|+||++..
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~G-e~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lf 691 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVG-SLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIF 691 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCC-CEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccC
Confidence 46899999999964 344 999999999 99999999999999999999 6655432 122467776511
Q ss_pred Cch--------------HHHHHHHHcCCc-----------ccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCC
Q 003258 391 RLP--------------WFDLILADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (835)
Q Consensus 391 ~i~--------------~~d~i~~~ig~~-----------~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~gl 444 (835)
.-+ .+++++...++. -.+...-.+|||||| |+++|+++..+|+++||||||+++
T Consensus 692 ngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSAL 771 (1622)
T PLN03130 692 NATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL 771 (1622)
T ss_pred CCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 001 123333333332 234445568999999 899999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 445 DPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 445 Dp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
|+..+..+...++..+. ++.|+|++||.......+|+++.+++|.+..
T Consensus 772 D~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e 819 (1622)
T PLN03130 772 DAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRIILVHEGMIKE 819 (1622)
T ss_pred CHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEEEEeCCEEEE
Confidence 99999888765655443 4789999999999888899999999988753
No 387
>PTZ00243 ABC transporter; Provisional
Probab=99.72 E-value=1.4e-17 Score=215.61 Aligned_cols=158 Identities=16% Similarity=0.194 Sum_probs=119.3
Q ss_pred ecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------cccceeecCCCCC-CchHHHH-------
Q 003258 335 GISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP-RLPWFDL------- 397 (835)
Q Consensus 335 ~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------a~~G~~vP~~~~~-~i~~~d~------- 397 (835)
.++++++ ++||++++| ++++|+|||||||||||++| |++.+. ...-.|+|+.... ..++.++
T Consensus 669 ~~~~~~iL~~isl~i~~G-~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~ 747 (1560)
T PTZ00243 669 ELEPKVLLRDVSVSVPRG-KLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEE 747 (1560)
T ss_pred ccCCceeEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChh
Confidence 3444444 999999999 99999999999999999999 554432 1122467776421 1111111
Q ss_pred -------H---------HHHc--CCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHH
Q 003258 398 -------I---------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458 (835)
Q Consensus 398 -------i---------~~~i--g~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~ 458 (835)
+ +..+ |+...+.....+|||||+ |+++|++++.+|+++|||||+++||+..+..+...++.
T Consensus 748 ~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~ 827 (1560)
T PTZ00243 748 DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFL 827 (1560)
T ss_pred hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 1 1122 455556788999999999 89999999999999999999999999998888765543
Q ss_pred HHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 459 YLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 459 ~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
... .+.|+|++||+.++...||+++.+.+|.+.+.
T Consensus 828 ~~~-~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~ 862 (1560)
T PTZ00243 828 GAL-AGKTRVLATHQVHVVPRADYVVALGDGRVEFS 862 (1560)
T ss_pred Hhh-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence 333 37899999999997788999999999987643
No 388
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.72 E-value=4.2e-17 Score=176.73 Aligned_cols=170 Identities=17% Similarity=0.130 Sum_probs=130.7
Q ss_pred CCCeEEEeeeeeecCC------------cee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh------hhc----
Q 003258 323 ENSEMTVGSLSKGISD------------FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS------LMS---- 378 (835)
Q Consensus 323 g~~~l~~~~ls~~y~~------------~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~------~ma---- 378 (835)
+...+++++|...|.- +.| ++||++.+| +.++|+|.+|||||||=.++ +|+. +.+
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~g-qTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~ 351 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRG-QTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDID 351 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCC-CeEEEEecCCCCcchHHHHHHhhcCcCceEEECCcccc
Confidence 3457889998887731 123 899999999 99999999999999998877 3332 211
Q ss_pred -----------ccceeecCCCCCCc----hH-----------------------HHHHHHHcCCc-ccccCCcccchHHH
Q 003258 379 -----------KAGLYLPAKNHPRL----PW-----------------------FDLILADIGDH-QSLEQNLSTFSGHI 419 (835)
Q Consensus 379 -----------~~G~~vP~~~~~~i----~~-----------------------~d~i~~~ig~~-~~~~~~lstfSgg~ 419 (835)
.---.|+++++..+ .+ +-..+..+|++ ...++++..||||+
T Consensus 352 ~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQ 431 (534)
T COG4172 352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQ 431 (534)
T ss_pred ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcch
Confidence 01113344432222 21 22346667765 46789999999999
Q ss_pred H-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 420 ~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+ |+++|++++.+|.+++||||||.||..-...+.+ ++..|.+ .+.+-+|+|||+. +..+|++++.+.+|++...
T Consensus 432 RQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~-LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~ 508 (534)
T COG4172 432 RQRIAIARALILKPELILLDEPTSALDRSVQAQVLD-LLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ 508 (534)
T ss_pred hhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHH-HHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeee
Confidence 9 8999999999999999999999999999999999 6666654 5779999999988 6789999999999998754
No 389
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.72 E-value=2.4e-17 Score=213.76 Aligned_cols=166 Identities=10% Similarity=0.054 Sum_probs=126.7
Q ss_pred CCeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hcc
Q 003258 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 379 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~ 379 (835)
.+.++++||+++|++ .++ ++||++++| +.++|+||+|||||||++++ ++..+ +.+
T Consensus 1282 ~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~G-ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~ 1360 (1522)
T TIGR00957 1282 RGRVEFRNYCLRYREDLDLVLRHINVTIHGG-EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360 (1522)
T ss_pred CCcEEEEEEEEEeCCCCcccccceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHh
Confidence 367999999999964 334 999999999 99999999999999999999 33321 122
Q ss_pred cceeecCCCCCCch--H--------------HHHHHHHcCCc-----------ccccCCcccchHHHH-HHHHHHHHcCC
Q 003258 380 AGLYLPAKNHPRLP--W--------------FDLILADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 380 ~G~~vP~~~~~~i~--~--------------~d~i~~~ig~~-----------~~~~~~lstfSgg~~-rl~~~~~la~~ 431 (835)
.-.++||++. -++ + +.+++...++. ..+..+-+.|||||+ |+++|++++.+
T Consensus 1361 ~i~iVpQdp~-LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957 1361 KITIIPQDPV-LFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred cCeEECCCCc-ccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence 3346777751 111 0 11233333332 233344577999999 79999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
|++|||||||+++|+..-..+..++.+.+ .++|+|+++|..+....+|+++.+++|++..
T Consensus 1440 ~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE 1499 (1522)
T TIGR00957 1440 TKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAE 1499 (1522)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999888888555443 3689999999999777899999999998764
No 390
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.72 E-value=4.1e-17 Score=211.12 Aligned_cols=166 Identities=17% Similarity=0.185 Sum_probs=128.3
Q ss_pred CCeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh------------------hccc
Q 003258 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKA 380 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------------------ma~~ 380 (835)
.+.|+++||+++|++ .++ ++||++.+| +.++|+|++|||||||+++| |+... +.+.
T Consensus 1215 ~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~G-ekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~ 1293 (1490)
T TIGR01271 1215 GGQMDVQGLTAKYTEAGRAVLQDLSFSVEGG-QRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKA 1293 (1490)
T ss_pred CCeEEEEEEEEEeCCCCcceeeccEEEEcCC-CEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhc
Confidence 367999999999964 445 999999999 99999999999999999999 55421 1222
Q ss_pred ceeecCCCCCCch--H--------------HHHHHHHcCCccc-----------ccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 381 GLYLPAKNHPRLP--W--------------FDLILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 381 G~~vP~~~~~~i~--~--------------~d~i~~~ig~~~~-----------~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
-.++||++. -++ + +.+++...++.+. +...-..|||||+ ++++|++++.+|
T Consensus 1294 is~IpQdp~-LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~ 1372 (1490)
T TIGR01271 1294 FGVIPQKVF-IFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKA 1372 (1490)
T ss_pred eEEEeCCCc-cCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCC
Confidence 347788762 111 1 2233444544332 2333457999999 799999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
++|||||||+++|+..-..|...+.+.+ .++|+|++||..+....+|+++.+++|++..
T Consensus 1373 ~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1373 KILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVEALLECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999888888665543 3689999999999777899999999998763
No 391
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.71 E-value=6.2e-17 Score=171.35 Aligned_cols=77 Identities=25% Similarity=0.232 Sum_probs=65.2
Q ss_pred ccCCcccchHHHH-HHHHHHHHc----CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcc
Q 003258 408 LEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK 482 (835)
Q Consensus 408 ~~~~lstfSgg~~-rl~~~~~la----~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~ 482 (835)
.+..+.+||+||+ |++++++++ .+|+++||||||+|+||.....+...+ ..+.+ +.++|++||..++..+|++
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l-~~~~~-~~~ii~~~h~~~~~~~~d~ 229 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMI-KELSD-GAQFITTTFRPELLEVADK 229 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHH-HHHhC-CCEEEEEecCHHHHhhCCE
Confidence 3578899999999 899998885 468999999999999999999998844 45555 7889999999888889998
Q ss_pred cccc
Q 003258 483 DTRF 486 (835)
Q Consensus 483 ~~~~ 486 (835)
.+.+
T Consensus 230 i~~l 233 (243)
T cd03272 230 FYGV 233 (243)
T ss_pred EEEE
Confidence 8764
No 392
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.71 E-value=1.9e-17 Score=172.13 Aligned_cols=150 Identities=17% Similarity=0.157 Sum_probs=102.3
Q ss_pred EEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhh------hhh-cccceeecCCCCC-------
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLA------SLM-SKAGLYLPAKNHP------- 390 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli------~~m-a~~G~~vP~~~~~------- 390 (835)
|+++|.. .|++..+ ++++ ++++|+||||+||||+|++|-.+ .+. .+.| ++|..+..
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~------~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~-~~~~~~~~~~~~~~~ 77 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHK------SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLS-DLIHNSAGHPNLDSC 77 (212)
T ss_pred EEEECcc-cCCCCeeeccCCC------CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHH-HHhcCCCCCCCCceE
Confidence 3455554 5655444 5554 58999999999999999998322 000 1111 12222100
Q ss_pred C-chHH-------------------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHc----CCCcEEEEeC
Q 003258 391 R-LPWF-------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV----SRESLVLIDE 439 (835)
Q Consensus 391 ~-i~~~-------------------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la----~~~~LlLLDE 439 (835)
. .-+| ..+...+++.+..++.++.||+||+ |+.++++++ .+|++++|||
T Consensus 78 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDE 157 (212)
T cd03274 78 SVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDE 157 (212)
T ss_pred EEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcC
Confidence 0 0001 1222334455566778999999999 788888775 3579999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccc
Q 003258 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 486 (835)
Q Consensus 440 p~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~ 486 (835)
||+|+||.....+.. ++..+.+ +.++|++||+.++..+||+++.+
T Consensus 158 Pt~gLD~~~~~~l~~-~l~~~~~-~~~~iivs~~~~~~~~~d~v~~~ 202 (212)
T cd03274 158 IDAALDFRNVSIVAN-YIKERTK-NAQFIVISLRNNMFELADRLVGI 202 (212)
T ss_pred CCcCCCHHHHHHHHH-HHHHHcC-CCEEEEEECcHHHHHhCCEEEEE
Confidence 999999999999998 5555654 67899999998888999988765
No 393
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.70 E-value=4.4e-17 Score=175.91 Aligned_cols=159 Identities=19% Similarity=0.281 Sum_probs=132.1
Q ss_pred eEEEeeeeeecCCc--ee-ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCch---------
Q 003258 326 EMTVGSLSKGISDF--PV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP--------- 393 (835)
Q Consensus 326 ~l~~~~ls~~y~~~--~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~--------- 393 (835)
.++++|+.+.|... .+ |+|+++.+| +++-|+|.||||||||++.+ .|+|.|++|...+.
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikrG-elvFliG~NGsGKST~~~LL--------tGL~~PqsG~I~ldg~pV~~e~l 392 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKRG-ELVFLIGGNGSGKSTLAMLL--------TGLYQPQSGEILLDGKPVSAEQL 392 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEecC-cEEEEECCCCCcHHHHHHHH--------hcccCCCCCceeECCccCCCCCH
Confidence 57899999999754 34 999999999 99999999999999999999 99999999843321
Q ss_pred -----HHHHHHHHcC-------Ccc---------------------cccCC--cccchHHHH-HHHHHHHHcCCCcEEEE
Q 003258 394 -----WFDLILADIG-------DHQ---------------------SLEQN--LSTFSGHIS-RIVDILELVSRESLVLI 437 (835)
Q Consensus 394 -----~~d~i~~~ig-------~~~---------------------~~~~~--lstfSgg~~-rl~~~~~la~~~~LlLL 437 (835)
.|..||++.. .++ .-+.. .-.||.||+ |++++.+++.+++++++
T Consensus 393 edYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~ 472 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVL 472 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEe
Confidence 2444444432 111 11223 346899999 99999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
||=.+.-||.-+..+..-++-.+++.|+||+.+|||-.-...||+...+.||.+.-
T Consensus 473 DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e 528 (546)
T COG4615 473 DEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528 (546)
T ss_pred ehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceee
Confidence 99999999999999999999999999999999999977777899999999998753
No 394
>PRK04946 hypothetical protein; Provisional
Probab=99.70 E-value=1.9e-17 Score=165.85 Aligned_cols=74 Identities=26% Similarity=0.338 Sum_probs=69.8
Q ss_pred CceeeccccHHHHHHHHHHHHHcc--CCCCcEEEEecccchHHHHHHHHHhhcCCCcccccCCCCCCC--ceEEEEEC
Q 003258 762 NSLDLRGMRVEEASHQLDIALACW--ESRSVLFVIHGMGTGVVKERVLEILRNHPRVAKYEQESPMNY--GCTVAYIK 835 (835)
Q Consensus 762 ~~ldlrG~r~eEA~~~vd~~ld~a--~g~~~v~IiHG~GtG~Lr~~v~~~L~~~p~V~~f~~~~~~~~--G~Tvv~~~ 835 (835)
.+|||+|||+|||..+|+.||++| .|+..|.||||+|+|+||+.|+.||++||+|..|+.|++.+| |+|+|.|+
T Consensus 96 ~~LDLhG~~~eeA~~~L~~fl~~a~~~g~r~v~IIHGkG~gvLk~~V~~wL~q~~~V~af~~A~~~~GG~GA~~VlLk 173 (181)
T PRK04946 96 LFLDLHGLTQLQAKQELGALIAACRKEHVFCACVMHGHGKHILKQQTPLWLAQHPDVMAFHQAPKEWGGDAALLVLIE 173 (181)
T ss_pred eEEECCCCCHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCHhHHHHHHHHHHcCCchhheeeccCcccCCceEEEEEEe
Confidence 589999999999999999999997 799999999999999999999999999999999999999875 68888874
No 395
>PLN03140 ABC transporter G family member; Provisional
Probab=99.68 E-value=4.8e-17 Score=208.50 Aligned_cols=151 Identities=18% Similarity=0.224 Sum_probs=117.7
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh----------c---------ccceeecCCCC--CCchH-----
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------S---------KAGLYLPAKNH--PRLPW----- 394 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m----------a---------~~G~~vP~~~~--~~i~~----- 394 (835)
++|+.+.+| ++++|+||||||||||||+| |++..- + +.-.|+|+... ..+++
T Consensus 183 ~vs~~i~~G-e~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~ 261 (1470)
T PLN03140 183 DASGIIKPS-RMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLD 261 (1470)
T ss_pred CCeEEEeCC-eEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHH
Confidence 999999999 99999999999999999999 554321 0 11235555420 01111
Q ss_pred --------------------------------------------------HHHHHHHcCCcccc-----cCCcccchHHH
Q 003258 395 --------------------------------------------------FDLILADIGDHQSL-----EQNLSTFSGHI 419 (835)
Q Consensus 395 --------------------------------------------------~d~i~~~ig~~~~~-----~~~lstfSgg~ 419 (835)
.+.++..+|+.+.. +..+..+||||
T Consensus 262 f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGe 341 (1470)
T PLN03140 262 FSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQ 341 (1470)
T ss_pred HHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCccc
Confidence 23455667776533 45678999999
Q ss_pred H-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecch--hHHhhhcccccccCCceeec
Q 003258 420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYA--DLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 420 ~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~--el~~~~~~~~~~~n~~v~~~ 494 (835)
+ |+.++.+++.+|++++|||||+|||+.....+.. ++..+.+ .|.|+|++||+. ++..++|+++.+.+|++.+.
T Consensus 342 rkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~-~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~ 419 (1470)
T PLN03140 342 KKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVK-CLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQ 419 (1470)
T ss_pred ceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHH-HHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEe
Confidence 9 8999999999999999999999999999999999 4455544 588999999984 57889999999999998775
No 396
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.68 E-value=3e-17 Score=160.14 Aligned_cols=165 Identities=18% Similarity=0.235 Sum_probs=119.6
Q ss_pred eEEEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh------------------hcccceeecC
Q 003258 326 EMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGLYLPA 386 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------------------ma~~G~~vP~ 386 (835)
++.++||+.+- +..|+|.++..| +++-++|||||||||||-.+ |++.. +|+.-.|..+
T Consensus 3 l~qln~v~~~t--RL~plS~qv~aG-e~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQ 79 (248)
T COG4138 3 LMQLNDVAEST--RLGPLSGEVRAG-EILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQ 79 (248)
T ss_pred eeeeccccccc--cccccccccccc-eEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhh
Confidence 34555554432 233999999999 99999999999999999888 44432 1111111111
Q ss_pred CC--CCCch----------------HHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHc-------CCCcEEEEeCC
Q 003258 387 KN--HPRLP----------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV-------SRESLVLIDEI 440 (835)
Q Consensus 387 ~~--~~~i~----------------~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la-------~~~~LlLLDEp 440 (835)
.. ...++ .+++|...+++.|.+.+.++.||||+= |+.++.... ....|+|+|||
T Consensus 80 qq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP 159 (248)
T COG4138 80 QQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEP 159 (248)
T ss_pred ccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCC
Confidence 10 11122 245667778899999999999999986 666664332 13359999999
Q ss_pred CCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 441 ~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
.++||.....+|-. ++..+...|.+||+++||.+ ..+-+++.+.+..|.+...
T Consensus 160 ~~~LDvAQ~~aLdr-ll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~ 213 (248)
T COG4138 160 MNSLDVAQQSALDR-LLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLAS 213 (248)
T ss_pred CcchhHHHHHHHHH-HHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEee
Confidence 99999998887766 88889999999999999987 6678899988888877544
No 397
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.68 E-value=6.3e-17 Score=167.33 Aligned_cols=142 Identities=19% Similarity=0.131 Sum_probs=96.6
Q ss_pred cceeecCCceEEEEEcCCCCChhhHHhhHH-----hhhhhc-----------------ccceeecCCC-CC------Cch
Q 003258 343 IDIKVECETRVVVITGPNTGGKTASMKTLG-----LASLMS-----------------KAGLYLPAKN-HP------RLP 393 (835)
Q Consensus 343 isl~l~~g~~~~~I~GpNGsGKSTlLK~iG-----li~~ma-----------------~~G~~vP~~~-~~------~i~ 393 (835)
.++++.+| +++|+||||+||||||++|. ....-. ..+ ++++.. .. .+.
T Consensus 16 ~~l~~~~g--~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~-~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 16 SEIEFFSP--LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVK-LAFENANGKKYTITRSLA 92 (204)
T ss_pred eEEecCCC--eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEE-EEEEeCCCCEEEEEEEhh
Confidence 34556666 89999999999999999983 221100 001 111111 00 112
Q ss_pred HHHHHHHH--cCCcccccCCcccchHHHHH-------HHHHHHHcCCCcEEEEeCCCCCCCHHhHH-HHHHHHHHHHhcC
Q 003258 394 WFDLILAD--IGDHQSLEQNLSTFSGHISR-------IVDILELVSRESLVLIDEIGSGTDPSEGV-ALATSILQYLRDR 463 (835)
Q Consensus 394 ~~d~i~~~--ig~~~~~~~~lstfSgg~~r-------l~~~~~la~~~~LlLLDEp~~glDp~~~~-aL~~all~~l~~~ 463 (835)
+++++... -.....+++.+++||+||++ ++++++++.+|+++|||||+++||+.... .+.. ++..+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~-~l~~~~~~ 171 (204)
T cd03240 93 ILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAE-IIEERKSQ 171 (204)
T ss_pred HhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHH-HHHHHHhc
Confidence 33333110 00122447789999999995 45667889999999999999999999999 8888 55556554
Q ss_pred -CcEEEEEecchhHHhhhcccccccC
Q 003258 464 -VGLAVVTTHYADLSCLKDKDTRFEN 488 (835)
Q Consensus 464 -~~~viitTH~~el~~~~~~~~~~~n 488 (835)
+.++|++||+.++...|++++.+..
T Consensus 172 ~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 172 KNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred cCCEEEEEEecHHHHhhCCEEEEEee
Confidence 7899999999987778887776643
No 398
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.67 E-value=1.1e-16 Score=205.54 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=117.9
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh-----h----------h-------cccceeecCCCC--CCchH--
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-----L----------M-------SKAGLYLPAKNH--PRLPW-- 394 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~-----~----------m-------a~~G~~vP~~~~--~~i~~-- 394 (835)
++|+.+.+| ++++|+||||||||||||+| |+.. . + .+.-.|+|+... ..+++
T Consensus 79 ~vs~~i~~G-e~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E 157 (1394)
T TIGR00956 79 PMDGLIKPG-ELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGE 157 (1394)
T ss_pred CCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHH
Confidence 899999999 99999999999999999999 5531 0 0 001235565431 00110
Q ss_pred ---------------------------HHHHHHHcCCcccccCC-----cccchHHHH-HHHHHHHHcCCCcEEEEeCCC
Q 003258 395 ---------------------------FDLILADIGDHQSLEQN-----LSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (835)
Q Consensus 395 ---------------------------~d~i~~~ig~~~~~~~~-----lstfSgg~~-rl~~~~~la~~~~LlLLDEp~ 441 (835)
.+.++..+|+.+..++. +..|||||| |+.++++++.+|++++|||||
T Consensus 158 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPT 237 (1394)
T TIGR00956 158 TLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNAT 237 (1394)
T ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCC
Confidence 13356667887665544 567999999 899999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecch--hHHhhhcccccccCCceeec
Q 003258 442 SGTDPSEGVALATSILQYLRD-RVGLAVVTTHYA--DLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~-~~~~viitTH~~--el~~~~~~~~~~~n~~v~~~ 494 (835)
+|||+.....+.. +++.+.+ .|.|+|++||+. ++..++|++..+.+|++.+.
T Consensus 238 sgLD~~~~~~i~~-~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~ 292 (1394)
T TIGR00956 238 RGLDSATALEFIR-ALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYF 292 (1394)
T ss_pred CCcCHHHHHHHHH-HHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEE
Confidence 9999999999999 5566665 588999999995 47789999999999998765
No 399
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.67 E-value=2.6e-16 Score=167.48 Aligned_cols=76 Identities=12% Similarity=0.092 Sum_probs=64.5
Q ss_pred CCcccchHHHH-HHHHHHHHcC----CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccc
Q 003258 410 QNLSTFSGHIS-RIVDILELVS----RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 484 (835)
Q Consensus 410 ~~lstfSgg~~-rl~~~~~la~----~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~ 484 (835)
+++.+||+||+ +++++++++. +|+++|||||++|+|+.....+.. ++..+.+.|.++|++||+.++..+||+.+
T Consensus 151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~-~i~~~~~~g~~vi~isH~~~~~~~~d~i~ 229 (247)
T cd03275 151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVAS-YIREQAGPNFQFIVISLKEEFFSKADALV 229 (247)
T ss_pred hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHH-HHHHhccCCcEEEEEECCHHHHhhCCeEE
Confidence 34589999999 7888888865 489999999999999999999998 55556666889999999988888898886
Q ss_pred cc
Q 003258 485 RF 486 (835)
Q Consensus 485 ~~ 486 (835)
.+
T Consensus 230 ~~ 231 (247)
T cd03275 230 GV 231 (247)
T ss_pred EE
Confidence 65
No 400
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.67 E-value=1.6e-16 Score=156.06 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=127.3
Q ss_pred EEEeeeeeecCC----------cee-ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC------
Q 003258 327 MTVGSLSKGISD----------FPV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------ 389 (835)
Q Consensus 327 l~~~~ls~~y~~----------~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~------ 389 (835)
++++|++|.|.. ..| ++||+++.| +.++|+|.||||||||.|++ +|...|.+|.
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~-QTlaiIG~NGSGKSTLakMl--------aGmi~PTsG~il~n~~ 75 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREG-QTLAIIGENGSGKSTLAKML--------AGMIEPTSGEILINDH 75 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCC-cEEEEEccCCCcHhHHHHHH--------hcccCCCCceEEECCc
Confidence 457788877632 123 999999999 99999999999999999999 5555555541
Q ss_pred ----------------------CCchH-----------------------HHHH---HHHcCC-cccccCCcccchHHHH
Q 003258 390 ----------------------PRLPW-----------------------FDLI---LADIGD-HQSLEQNLSTFSGHIS 420 (835)
Q Consensus 390 ----------------------~~i~~-----------------------~d~i---~~~ig~-~~~~~~~lstfSgg~~ 420 (835)
..+.. -.+| +..+|+ .+..+-++..||.|++
T Consensus 76 ~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QK 155 (267)
T COG4167 76 PLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQK 155 (267)
T ss_pred cccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhH
Confidence 11111 1122 344554 3667889999999999
Q ss_pred -HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 421 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 421 -rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|+++++++.-+|+++|.||..++||...+..|.+.+++.-.+.|...|.+|.+.- ++.++|.++.++.|.|...
T Consensus 156 QRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~ 231 (267)
T COG4167 156 QRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVER 231 (267)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeec
Confidence 8999999999999999999999999999999999777766667888899998876 8889999999999988755
No 401
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.67 E-value=4.4e-16 Score=165.97 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=66.4
Q ss_pred ccccCCcccchHHHH-HHHHHHHHc----CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhh
Q 003258 406 QSLEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK 480 (835)
Q Consensus 406 ~~~~~~lstfSgg~~-rl~~~~~la----~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~ 480 (835)
+..+..+.+||+||+ +++++++++ .+|+++||||||+|+|+.....+.. ++..+.+ |.++|++||+.++...|
T Consensus 158 ~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~-~l~~~~~-g~~ii~iSH~~~~~~~~ 235 (251)
T cd03273 158 GVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGR-MIKTHFK-GSQFIVVSLKEGMFNNA 235 (251)
T ss_pred HhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHcC-CCEEEEEECCHHHHHhC
Confidence 344578999999999 788888776 6789999999999999999999998 4444544 78999999998888889
Q ss_pred cccccc
Q 003258 481 DKDTRF 486 (835)
Q Consensus 481 ~~~~~~ 486 (835)
|+++.+
T Consensus 236 d~v~~~ 241 (251)
T cd03273 236 NVLFRT 241 (251)
T ss_pred CEEEEE
Confidence 988764
No 402
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.65 E-value=7.3e-16 Score=183.12 Aligned_cols=151 Identities=23% Similarity=0.338 Sum_probs=124.8
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh----------h---------hcccceeecCCCCCCch--------
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS----------L---------MSKAGLYLPAKNHPRLP-------- 393 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~----------~---------ma~~G~~vP~~~~~~i~-------- 393 (835)
+++..+.+| ++++|+||.||||||||+++ |... + +.++-.||+|+. .-++
T Consensus 48 ~vsg~~~~G-el~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD-~l~~~LTV~EtL 125 (613)
T KOG0061|consen 48 GVSGTAKPG-ELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDD-VLLPTLTVRETL 125 (613)
T ss_pred CcEEEEecC-eEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccc-cccccccHHHHH
Confidence 999999999 99999999999999999999 2221 1 112334677664 1111
Q ss_pred -------------------HHHHHHHHcCCcccccCCcc-----cchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHh
Q 003258 394 -------------------WFDLILADIGDHQSLEQNLS-----TFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 448 (835)
Q Consensus 394 -------------------~~d~i~~~ig~~~~~~~~ls-----tfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~ 448 (835)
.+++++..+|+.+-.+..++ .+||||+ |++++..++++|+++++||||+|||...
T Consensus 126 ~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~s 205 (613)
T KOG0061|consen 126 RFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFS 205 (613)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhh
Confidence 26778899999877777776 4999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecch--hHHhhhcccccccCCceeecc
Q 003258 449 GVALATSILQYLRDRVGLAVVTTHYA--DLSCLKDKDTRFENAATEFSL 495 (835)
Q Consensus 449 ~~aL~~all~~l~~~~~~viitTH~~--el~~~~~~~~~~~n~~v~~~~ 495 (835)
...+.. +++.+++.|+|||+|=|.+ ++-.+-|+...+.+|.+.|..
T Consensus 206 A~~vv~-~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 206 ALQVVQ-LLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred HHHHHH-HHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 999999 6666777799999999996 488899999999999988874
No 403
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.64 E-value=1.8e-15 Score=155.73 Aligned_cols=143 Identities=17% Similarity=0.139 Sum_probs=94.3
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhh--------------hcccce------eecCCCC--C-CchHH--H
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASL--------------MSKAGL------YLPAKNH--P-RLPWF--D 396 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~--------------ma~~G~------~vP~~~~--~-~i~~~--d 396 (835)
+.++.+.+| +.+|+||||+||||+|.+|.+... +-+.|. ..+..+. . ..... +
T Consensus 14 ~~~l~f~~g--l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 91 (198)
T cd03276 14 HLQIEFGPR--VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQD 91 (198)
T ss_pred eeEEecCCC--eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHH
Confidence 456666666 789999999999999999843210 000010 0111100 0 01111 2
Q ss_pred HHHHHcCCcccccCCcccchHHHH-HHHHHHHH----cCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc--CCcEEEE
Q 003258 397 LILADIGDHQSLEQNLSTFSGHIS-RIVDILEL----VSRESLVLIDEIGSGTDPSEGVALATSILQYLRD--RVGLAVV 469 (835)
Q Consensus 397 ~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~l----a~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~--~~~~vii 469 (835)
++...+...+..++++.+||+||+ ++++++++ +.+|+++|||||++|+|+.....+...+.+...+ .+.++|+
T Consensus 92 ~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii 171 (198)
T cd03276 92 MARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFI 171 (198)
T ss_pred HHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 222223335567889999999999 78888777 6899999999999999999999999966665444 2358999
Q ss_pred EecchhHHhhhcccccc
Q 003258 470 TTHYADLSCLKDKDTRF 486 (835)
Q Consensus 470 tTH~~el~~~~~~~~~~ 486 (835)
+||+++...-.|++-.+
T Consensus 172 ~th~~~~i~~~d~v~~~ 188 (198)
T cd03276 172 TPQDISGLASSDDVKVF 188 (198)
T ss_pred ECCcccccccccceeEE
Confidence 99998744333544333
No 404
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.64 E-value=7.7e-16 Score=169.08 Aligned_cols=153 Identities=24% Similarity=0.310 Sum_probs=116.8
Q ss_pred CeEEEeeeeeecCCceecc-ceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC--------------
Q 003258 325 SEMTVGSLSKGISDFPVPI-DIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------------- 389 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v~i-sl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~-------------- 389 (835)
.+++-.++++.||+..+.+ .=++..| ++++++||||-|||||.|++ +|...|.++.
T Consensus 341 ~lv~y~~~~k~~g~F~L~V~~G~i~~g-EvigilGpNgiGKTTFvk~L--------AG~ikPdeg~~~~~~vSyKPQyI~ 411 (591)
T COG1245 341 TLVEYPDLKKTYGDFKLEVEEGEIYDG-EVIGILGPNGIGKTTFVKLL--------AGVIKPDEGSEEDLKVSYKPQYIS 411 (591)
T ss_pred eeeecchheeecCceEEEecCCeeecc-eEEEEECCCCcchHHHHHHH--------hccccCCCCCCccceEeecceeec
Confidence 3455566777777644322 1234556 99999999999999999999 6666666541
Q ss_pred CCch-------------------HHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhH
Q 003258 390 PRLP-------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (835)
Q Consensus 390 ~~i~-------------------~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~ 449 (835)
+... +..+++.-+.+++.+++.+..||||+. |++++.+++.+.+|+|||||.++||.+.+
T Consensus 412 ~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 412 PDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred CCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 1100 122445556677889999999999987 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchhHHh-hhcccccc
Q 003258 450 VALATSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRF 486 (835)
Q Consensus 450 ~aL~~all~~l~~~~~~viitTH~~el~~-~~~~~~~~ 486 (835)
...+.+|-....+.+.+.+++-||..+.. ++|+.+.|
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF 529 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVF 529 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEE
Confidence 99999777777777899999999987554 55555444
No 405
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.63 E-value=3e-16 Score=151.02 Aligned_cols=100 Identities=27% Similarity=0.486 Sum_probs=73.0
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hcccceeecCCCC--CCch------
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLYLPAKNH--PRLP------ 393 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~~G~~vP~~~~--~~i~------ 393 (835)
++|+++.+| ++++|+|||||||||||++| |+..+ ..+.-.++|+... ..+.
T Consensus 3 ~v~~~i~~g-~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~ 81 (137)
T PF00005_consen 3 NVSLEIKPG-EIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENES 81 (137)
T ss_dssp EEEEEEETT-SEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHH
T ss_pred ceEEEEcCC-CEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 578999999 99999999999999999999 44332 1112223444421 1111
Q ss_pred --HHHHHHHHcCCcccccCCc----ccchHHHH-HHHHHHHHcCCCcEEEEeCCCC
Q 003258 394 --WFDLILADIGDHQSLEQNL----STFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (835)
Q Consensus 394 --~~d~i~~~ig~~~~~~~~l----stfSgg~~-rl~~~~~la~~~~LlLLDEp~~ 442 (835)
.+..++..++..+..+..+ +.||+||+ |++++++++.+|+++||||||+
T Consensus 82 ~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 82 DERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 1344666777655444444 99999999 8999999999999999999996
No 406
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.63 E-value=1e-15 Score=168.61 Aligned_cols=167 Identities=18% Similarity=0.229 Sum_probs=123.5
Q ss_pred CCeEEEeeeeeecC-Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH--------Hhhhh------------hccc
Q 003258 324 NSEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL--------GLASL------------MSKA 380 (835)
Q Consensus 324 ~~~l~~~~ls~~y~-~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i--------Gli~~------------ma~~ 380 (835)
+|.++++||+|.|. +++| ++||++.+| +.++|+||+|+||||+|+.+ |-|.+ +.+.
T Consensus 535 ~G~i~fsnvtF~Y~p~k~vl~disF~v~pG-ktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~ 613 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDPGKPVLSDISFTVQPG-KTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSS 613 (790)
T ss_pred CCeEEEEEeEEecCCCCceeecceEEecCC-cEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHh
Confidence 57899999999995 4555 999999999 99999999999999999998 44333 2222
Q ss_pred ceeecCCCCCCch--HH------------H---------HHHHHc-CCccc----ccCCcccchHHHH-HHHHHHHHcCC
Q 003258 381 GLYLPAKNHPRLP--WF------------D---------LILADI-GDHQS----LEQNLSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 381 G~~vP~~~~~~i~--~~------------d---------~i~~~i-g~~~~----~~~~lstfSgg~~-rl~~~~~la~~ 431 (835)
...||++. .-+. ++ + +|..++ +..+- +-..--.||||++ |++.|+..+..
T Consensus 614 IGVVPQDt-vLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~ 692 (790)
T KOG0056|consen 614 IGVVPQDT-VLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKA 692 (790)
T ss_pred cCcccCcc-eeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcC
Confidence 33688875 1111 00 1 112111 11111 1122346899999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
|++++|||.|+.||...-.+|..++.+ +.. +.|.|++.|.....--||.+..+.||.+...
T Consensus 693 P~iIlLDEATSALDT~tER~IQaaL~r-lca-~RTtIVvAHRLSTivnAD~ILvi~~G~IvEr 753 (790)
T KOG0056|consen 693 PSIILLDEATSALDTNTERAIQAALAR-LCA-NRTTIVVAHRLSTIVNADLILVISNGRIVER 753 (790)
T ss_pred CcEEEEcchhhhcCCccHHHHHHHHHH-Hhc-CCceEEEeeeehheecccEEEEEeCCeEeec
Confidence 999999999999999999999885554 444 5688999999887777899999999987643
No 407
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.62 E-value=1.6e-15 Score=184.83 Aligned_cols=166 Identities=16% Similarity=0.227 Sum_probs=124.0
Q ss_pred CCeEEEeeeeeecCCce---e--ccceeecCCceEEEEEcCCCCChhhHHhhH--------Hhhhh-------------h
Q 003258 324 NSEMTVGSLSKGISDFP---V--PIDIKVECETRVVVITGPNTGGKTASMKTL--------GLASL-------------M 377 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~---v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i--------Gli~~-------------m 377 (835)
.|.++++||+|.|+.++ | ++|+++..| +.++|+||+||||||.+-+| |-+.+ .
T Consensus 985 ~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~G-qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 985 KGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAG-QTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred eeEEEEeeeEeeCCCCCCchhhcCCcEEecCC-CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHH
Confidence 35699999999997654 3 999999999 99999999999999999988 22221 1
Q ss_pred cccceeecCCCCCCc--hHHHHHHHH---------------------c-----CCcccccCCcccchHHHH-HHHHHHHH
Q 003258 378 SKAGLYLPAKNHPRL--PWFDLILAD---------------------I-----GDHQSLEQNLSTFSGHIS-RIVDILEL 428 (835)
Q Consensus 378 a~~G~~vP~~~~~~i--~~~d~i~~~---------------------i-----g~~~~~~~~lstfSgg~~-rl~~~~~l 428 (835)
.++| .|.|++ .-+ ++.++|.-- + |.+-.+-..-..|||||+ |+++|+++
T Consensus 1064 ~~i~-lVsQEP-~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAi 1141 (1228)
T KOG0055|consen 1064 KQIG-LVSQEP-VLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAI 1141 (1228)
T ss_pred Hhcc-eeccCc-hhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHH
Confidence 2222 344443 111 112222110 0 112223345678999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 429 a~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+.+|++|||||-||.||.++-..+-+|+ +.... |.|+|+++|.+..-.-||.+..+.||.+...
T Consensus 1142 lRnPkILLLDEATSALDseSErvVQeAL-d~a~~-gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1142 LRNPKILLLDEATSALDSESERVVQEAL-DRAME-GRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred HcCCCeeeeeccchhhhhhhHHHHHHHH-HHhhc-CCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 9999999999999999999988888854 44444 7899999999998889999999999988654
No 408
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=4.4e-15 Score=161.49 Aligned_cols=163 Identities=18% Similarity=0.228 Sum_probs=117.6
Q ss_pred EEEeeeeeecCCc--eeccceeecCCceEEEEEcCCCCChhhHHhhHHhhh--hhcc-----cceeecCCCCCCch----
Q 003258 327 MTVGSLSKGISDF--PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLAS--LMSK-----AGLYLPAKNHPRLP---- 393 (835)
Q Consensus 327 l~~~~ls~~y~~~--~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~--~ma~-----~G~~vP~~~~~~i~---- 393 (835)
|.++|.+.+-.++ +|+.|+.|-.| +.++++||||-|||||||-||--. +-.. |---+-+...+.+.
T Consensus 265 IKiEnF~ISA~Gk~LFvnA~L~Iv~G-RRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~ 343 (807)
T KOG0066|consen 265 IKIENFDISAQGKLLFVNASLTIVYG-RRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLK 343 (807)
T ss_pred ceeeeeeeecccceeeeccceEEEec-ceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHH
Confidence 5566666666444 45899999999 899999999999999999994311 1001 11111111111110
Q ss_pred -----------------------------------------------HHHHHHHHcCCcc-cccCCcccchHHHH-HHHH
Q 003258 394 -----------------------------------------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVD 424 (835)
Q Consensus 394 -----------------------------------------------~~d~i~~~ig~~~-~~~~~lstfSgg~~-rl~~ 424 (835)
-..+|++-+|.+. ..+++...||||.+ |+++
T Consensus 344 aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSL 423 (807)
T KOG0066|consen 344 ADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSL 423 (807)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhH
Confidence 0224566666543 45678889999999 9999
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 425 ~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++++...|.||+|||||+|||.. ++.| +-.||.-...|++|+|||.. +..+|..++.+.+..+.++
T Consensus 424 ARALflEPTLLMLDEPTNHLDLN---AVIW-LdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyY 490 (807)
T KOG0066|consen 424 ARALFLEPTLLMLDEPTNHLDLN---AVIW-LDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYY 490 (807)
T ss_pred HHHHhcCceeeeecCCccccccc---eeee-hhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhh
Confidence 99999999999999999999986 4555 66777777899999999976 7789998888877766554
No 409
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.60 E-value=8.2e-15 Score=179.51 Aligned_cols=95 Identities=28% Similarity=0.250 Sum_probs=80.3
Q ss_pred HHHcCCcc-cccCCcccchHHHH-HHHHHHHHcC---CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 003258 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVS---RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 399 ~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~---~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~ 473 (835)
+..+|+.. .+++++++|||||+ |+.++++++. +|+|+||||||+|||+.+...|.. ++..+.+.|.|+|++||+
T Consensus 812 L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~-~L~~l~~~G~TVIvi~H~ 890 (924)
T TIGR00630 812 LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLE-VLQRLVDQGNTVVVIEHN 890 (924)
T ss_pred HHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCC
Confidence 45667765 47899999999999 8999998886 589999999999999999999999 555567778999999999
Q ss_pred hhHHhhhcccccc------cCCceeec
Q 003258 474 ADLSCLKDKDTRF------ENAATEFS 494 (835)
Q Consensus 474 ~el~~~~~~~~~~------~n~~v~~~ 494 (835)
+++...|++++.+ .+|++.+.
T Consensus 891 ~~~i~~aD~ii~Lgp~~G~~gG~iv~~ 917 (924)
T TIGR00630 891 LDVIKTADYIIDLGPEGGDGGGTIVAS 917 (924)
T ss_pred HHHHHhCCEEEEecCCccCCCCEEEEe
Confidence 9876789999888 56776654
No 410
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.58 E-value=1.4e-14 Score=177.92 Aligned_cols=95 Identities=26% Similarity=0.252 Sum_probs=81.2
Q ss_pred HHHcCCcc-cccCCcccchHHHH-HHHHHHHHcCCC---cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 003258 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE---SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 399 ~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~~~---~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~ 473 (835)
+..+|+.. .+++.+++|||||+ |+.++++++.+| +++||||||+|||+.+...|.. ++..+.+.|.|+|++||+
T Consensus 814 L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~-~L~~l~~~G~TVIiitH~ 892 (943)
T PRK00349 814 LVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLE-VLHRLVDKGNTVVVIEHN 892 (943)
T ss_pred HHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecC
Confidence 45567765 57899999999999 899999999998 9999999999999999999999 556677778999999999
Q ss_pred hhHHhhhcccccc------cCCceeec
Q 003258 474 ADLSCLKDKDTRF------ENAATEFS 494 (835)
Q Consensus 474 ~el~~~~~~~~~~------~n~~v~~~ 494 (835)
.++...|++++.+ .+|.+.+.
T Consensus 893 ~~~i~~aD~ii~Lgp~~G~~~G~Iv~~ 919 (943)
T PRK00349 893 LDVIKTADWIIDLGPEGGDGGGEIVAT 919 (943)
T ss_pred HHHHHhCCEEEEecCCcCCCCCEEEEe
Confidence 9876789999888 46666554
No 411
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.55 E-value=1.5e-14 Score=144.71 Aligned_cols=167 Identities=17% Similarity=0.242 Sum_probs=123.9
Q ss_pred CCCeEEEeeeeeecCC-cee--ccceeecCCceEEEEEcCCCCChhhHHhhH--------Hhhhhhcccce---------
Q 003258 323 ENSEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL--------GLASLMSKAGL--------- 382 (835)
Q Consensus 323 g~~~l~~~~ls~~y~~-~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i--------Gli~~ma~~G~--------- 382 (835)
++..|++.++.|.|.. .++ ++|+.++.| ..+.++|.||+|||||||++ |.+.++++.-+
T Consensus 10 ~~~aievsgl~f~y~~~dP~~~Dfnldlp~g-sRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVSDPIFFDFNLDLPAG-SRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred ccceEEEeccEEecccCCceEEEEeeccCCC-ceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 3567999999999953 233 899999999 88999999999999999999 22222221110
Q ss_pred -----------------eecCCCCCCchHHHHHHHHcCCc-------------ccccCCcccchHHHH-HHHHHHHHcCC
Q 003258 383 -----------------YLPAKNHPRLPWFDLILADIGDH-------------QSLEQNLSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 383 -----------------~vP~~~~~~i~~~d~i~~~ig~~-------------~~~~~~lstfSgg~~-rl~~~~~la~~ 431 (835)
-+|-.+ .++ ...++..+|-. -++.-.+...|-||+ |+.+++.++.+
T Consensus 89 dl~YLGgeW~~~~~~agevplq~--D~s-ae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~P 165 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEVPLQG--DIS-AEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKP 165 (291)
T ss_pred ceeEecccccccccccccccccc--ccc-HHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccc
Confidence 111111 112 12222222211 123446678899999 78888999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 493 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~ 493 (835)
=.++||||.|-.||...+..|.+-+-+..-.+|+||+.+||..+ +.....+.+.+.+|++..
T Consensus 166 fkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 166 FKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred eeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 99999999999999999999999666666778999999999987 999999999999998764
No 412
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.54 E-value=4e-14 Score=163.98 Aligned_cols=160 Identities=21% Similarity=0.232 Sum_probs=121.4
Q ss_pred CCeEEEeeeeeecCCce--e-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hcc-cceeecCCCCCC
Q 003258 324 NSEMTVGSLSKGISDFP--V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MSK-AGLYLPAKNHPR 391 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~--v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma~-~G~~vP~~~~~~ 391 (835)
+.++.++|++..-++.. + +++|.+++| +.+.|+||||||||||+|+| ||=.+ -+. .-+|+|+.+...
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G-~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p 468 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPG-ERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLP 468 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCC-CEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCC
Confidence 46889999999886533 3 999999999 99999999999999999999 33221 112 246788876321
Q ss_pred ch------------------HHHHHHHHcCCccccc------CCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCH
Q 003258 392 LP------------------WFDLILADIGDHQSLE------QNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (835)
Q Consensus 392 i~------------------~~d~i~~~ig~~~~~~------~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp 446 (835)
-+ -+.+++..+|+.+.++ .=-..||+|++ |+++|+.+.++|++++|||-|+++|+
T Consensus 469 ~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe 548 (604)
T COG4178 469 QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548 (604)
T ss_pred CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence 11 1335667777664332 22357999988 89999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccc
Q 003258 447 SEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 486 (835)
Q Consensus 447 ~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~ 486 (835)
.....+...+.+.|- ++|+|.++|-..+..+.+....+
T Consensus 549 ~~e~~l~q~l~~~lp--~~tvISV~Hr~tl~~~h~~~l~l 586 (604)
T COG4178 549 ETEDRLYQLLKEELP--DATVISVGHRPTLWNFHSRQLEL 586 (604)
T ss_pred HHHHHHHHHHHhhCC--CCEEEEeccchhhHHHHhhheee
Confidence 999999886665433 68999999998887776654443
No 413
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.54 E-value=4.5e-14 Score=180.27 Aligned_cols=89 Identities=25% Similarity=0.276 Sum_probs=77.9
Q ss_pred HHHHcCCccc-ccCCcccchHHHH-HHHHHHHHc---CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEec
Q 003258 398 ILADIGDHQS-LEQNLSTFSGHIS-RIVDILELV---SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH 472 (835)
Q Consensus 398 i~~~ig~~~~-~~~~lstfSgg~~-rl~~~~~la---~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH 472 (835)
++..+|+... +++.+.+|||||+ |+.++++++ .+|+++||||||+|||+.+...|.. ++..+.+.|.|+|++||
T Consensus 792 ~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~-lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 792 ALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIY-VLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEeC
Confidence 3556788765 7999999999999 799998886 6999999999999999999999999 56667777899999999
Q ss_pred chhHHhhhccccccc
Q 003258 473 YADLSCLKDKDTRFE 487 (835)
Q Consensus 473 ~~el~~~~~~~~~~~ 487 (835)
++++..++|+++.+.
T Consensus 871 dl~~i~~aDrVi~L~ 885 (1809)
T PRK00635 871 NMHVVKVADYVLELG 885 (1809)
T ss_pred CHHHHHhCCEEEEEc
Confidence 998668999998885
No 414
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.53 E-value=6.3e-14 Score=141.89 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=84.4
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhhcccc------e------eecCCCCCCchH-HHHHHHHcCCcccccCCcccchHH
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLMSKAG------L------YLPAKNHPRLPW-FDLILADIGDHQSLEQNLSTFSGH 418 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~ma~~G------~------~vP~~~~~~i~~-~d~i~~~ig~~~~~~~~lstfSgg 418 (835)
.+.+|+||||+|||++|..|.+...-.... + .-+....+.+.+ |++.+..+ .... ...+ ||+|
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~-~~~~-~~~~--LS~G 98 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLV-LQGK-VEQI--LSGG 98 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEe-cCCc-Cccc--CCHH
Confidence 388999999999999999995542210000 0 000000000000 11100000 0001 1112 9999
Q ss_pred HH-HHHHHHHHc----CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccccc
Q 003258 419 IS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (835)
Q Consensus 419 ~~-rl~~~~~la----~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~ 487 (835)
|+ ++.++++++ .+|+++|+|||++++|+.....+... +..+.+.+.++|++||+.++...+++.+.+.
T Consensus 99 e~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~-L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~ 171 (178)
T cd03239 99 EKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDM-IKEMAKHTSQFIVITLKKEMFENADKLIGVL 171 (178)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEECCHHHHhhCCeEEEEE
Confidence 99 788887764 68999999999999999999999984 4455555789999999998777888776654
No 415
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.53 E-value=3.9e-14 Score=155.85 Aligned_cols=123 Identities=26% Similarity=0.319 Sum_probs=102.3
Q ss_pred CCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCC-------------------------------------
Q 003258 349 CETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPR------------------------------------- 391 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~------------------------------------- 391 (835)
+| ++++|+||||-||||.+|++ +|-.+|.-+...
T Consensus 99 ~G-~V~GilG~NGiGKsTalkIL--------aGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QY 169 (591)
T COG1245 99 PG-KVVGILGPNGIGKSTALKIL--------AGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQY 169 (591)
T ss_pred CC-cEEEEEcCCCccHHHHHHHH--------hCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHH
Confidence 56 99999999999999999999 666666544110
Q ss_pred ---------------------chHHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhH
Q 003258 392 ---------------------LPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (835)
Q Consensus 392 ---------------------i~~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~ 449 (835)
-+.+|.+...+++...+++.++.||||+. |++++.+++.+.+++++|||++-||..++
T Consensus 170 Vd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qR 249 (591)
T COG1245 170 VDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQR 249 (591)
T ss_pred HHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHH
Confidence 01256667788888999999999999987 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchhHHh-hhc
Q 003258 450 VALATSILQYLRDRVGLAVVTTHYADLSC-LKD 481 (835)
Q Consensus 450 ~aL~~all~~l~~~~~~viitTH~~el~~-~~~ 481 (835)
...+. +++.|.+.+.+||++-||+.+.. ++|
T Consensus 250 l~~ar-~Irel~~~~k~ViVVEHDLavLD~lsD 281 (591)
T COG1245 250 LNAAR-VIRELAEDGKYVIVVEHDLAVLDYLSD 281 (591)
T ss_pred HHHHH-HHHHHhccCCeEEEEechHHHHHHhhh
Confidence 99999 55666666899999999988444 444
No 416
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=99.50 E-value=2.9e-14 Score=126.17 Aligned_cols=72 Identities=35% Similarity=0.486 Sum_probs=61.8
Q ss_pred eeeccccHHHHHHHHHHHHHcc--CCCCcEEEEeccc----chHHHHHHHHHh---hcCCCcccccCCCCCC--CceEEE
Q 003258 764 LDLRGMRVEEASHQLDIALACW--ESRSVLFVIHGMG----TGVVKERVLEIL---RNHPRVAKYEQESPMN--YGCTVA 832 (835)
Q Consensus 764 ldlrG~r~eEA~~~vd~~ld~a--~g~~~v~IiHG~G----tG~Lr~~v~~~L---~~~p~V~~f~~~~~~~--~G~Tvv 832 (835)
|||+||+++||+..|+.||+.+ .+...++||||+| +|+||++|++|| ..+|.|..|+.+++.. .|+|+|
T Consensus 1 iDLHG~~~~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~Lk~~V~~~L~~~~~~~~v~~~~~~~~~~g~~G~~~V 80 (83)
T PF01713_consen 1 IDLHGLTVEEALRALEEFLDEARQRGIRELRIITGKGNHSKGGVLKRAVRRWLEEGYQYEEVLAYRDAEPEDGNSGATIV 80 (83)
T ss_dssp EE-TTS-HHHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSHHHHHHHHHHHHTHCCTTEEEEEE--CCCTGGGEEEE
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCcHHHHHHHHHHhhhccchhheeeecCCCCCCCeEEEE
Confidence 7999999999999999999996 7889999999999 999999999999 8899999999999987 489999
Q ss_pred EEC
Q 003258 833 YIK 835 (835)
Q Consensus 833 ~~~ 835 (835)
+||
T Consensus 81 ~lk 83 (83)
T PF01713_consen 81 YLK 83 (83)
T ss_dssp EE-
T ss_pred EeC
Confidence 987
No 417
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.50 E-value=6e-14 Score=146.09 Aligned_cols=82 Identities=16% Similarity=0.119 Sum_probs=59.4
Q ss_pred ccCCcccchHHHHHHHHHH-----HHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCC-cEEEEEecchh-HHhhh
Q 003258 408 LEQNLSTFSGHISRIVDIL-----ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV-GLAVVTTHYAD-LSCLK 480 (835)
Q Consensus 408 ~~~~lstfSgg~~rl~~~~-----~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~-~~viitTH~~e-l~~~~ 480 (835)
...++.+||+||+++..+. .++.+|+++|+|||++|+||.....+...+.+...+.+ .++|++||+.. ...++
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~ 199 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYH 199 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCccc
Confidence 4667889999999654432 23589999999999999999999999985555433324 57999999963 55555
Q ss_pred c--ccccccCC
Q 003258 481 D--KDTRFENA 489 (835)
Q Consensus 481 ~--~~~~~~n~ 489 (835)
+ ++..+.+|
T Consensus 200 ~~~~v~~l~~g 210 (213)
T cd03277 200 EKMTVLCVYNG 210 (213)
T ss_pred CceEEEEEecC
Confidence 4 33344444
No 418
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.44 E-value=4.2e-13 Score=167.45 Aligned_cols=169 Identities=15% Similarity=0.208 Sum_probs=132.5
Q ss_pred CCCeEEEeeeeeecCC---c-ee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh----ccc--ceeecCCCCC
Q 003258 323 ENSEMTVGSLSKGISD---F-PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----SKA--GLYLPAKNHP 390 (835)
Q Consensus 323 g~~~l~~~~ls~~y~~---~-~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m----a~~--G~~vP~~~~~ 390 (835)
++..++++|.+++.+. . .+ ++||++++| +.++|+||-|||||+||.+| |-+..+ .-. -.|+||.+-.
T Consensus 515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G-~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI 593 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSESPEPTLKDINFEIKKG-QLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWI 593 (1381)
T ss_pred CCceEEEeeeeEecCCCCCcccccceeEEecCC-CEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHh
Confidence 4456889999998864 1 23 999999999 99999999999999999998 554432 111 2478877511
Q ss_pred ---C------ch------HHHHHHHHc-----------CCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCC
Q 003258 391 ---R------LP------WFDLILADI-----------GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (835)
Q Consensus 391 ---~------i~------~~d~i~~~i-----------g~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~g 443 (835)
. ++ .+++++... ||.-.+-.+--+|||||| |+++|++.-.+.+++|||-|.+.
T Consensus 594 ~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSA 673 (1381)
T KOG0054|consen 594 QNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSA 673 (1381)
T ss_pred hCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchh
Confidence 1 11 144444333 333345567789999999 99999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 444 lDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
+|...+..|.+.++.-+.+ +.|+|++||..++...+|.++.++||++..
T Consensus 674 VDahvg~~if~~ci~~~L~-~KT~ILVTHql~~L~~ad~Iivl~~G~I~~ 722 (1381)
T KOG0054|consen 674 VDAHVGKHIFEECIRGLLR-GKTVILVTHQLQFLPHADQIIVLKDGKIVE 722 (1381)
T ss_pred hhHhhhHHHHHHHHHhhhc-CCEEEEEeCchhhhhhCCEEEEecCCeEec
Confidence 9999999999988855444 689999999988888999999999998854
No 419
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.44 E-value=9.9e-14 Score=169.36 Aligned_cols=151 Identities=18% Similarity=0.223 Sum_probs=115.3
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH------Hhhhh-hcccceeec------------CCC--CCCc--------
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL------GLASL-MSKAGLYLP------------AKN--HPRL-------- 392 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i------Gli~~-ma~~G~~vP------------~~~--~~~i-------- 392 (835)
+++=-+.+| ...+|+|++|+||||||+++ |.+.- |.=.|.+.+ |.. .+.+
T Consensus 809 ~V~G~~kPG-~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~f 887 (1391)
T KOG0065|consen 809 NVSGAFKPG-VLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRF 887 (1391)
T ss_pred cCceEecCC-ceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHH
Confidence 888888999 89999999999999999999 22210 000233333 221 0011
Q ss_pred ----------------hHHHHHHHHcCCcccccCCccc----chHHHH-HHHHHHHHcCCC-cEEEEeCCCCCCCHHhHH
Q 003258 393 ----------------PWFDLILADIGDHQSLEQNLST----FSGHIS-RIVDILELVSRE-SLVLIDEIGSGTDPSEGV 450 (835)
Q Consensus 393 ----------------~~~d~i~~~ig~~~~~~~~lst----fSgg~~-rl~~~~~la~~~-~LlLLDEp~~glDp~~~~ 450 (835)
.++++++..+++++..+.-+.. ||.+|| |+.++..++.+| +||+|||||+|||.....
T Consensus 888 SA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~ 967 (1391)
T KOG0065|consen 888 SAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAA 967 (1391)
T ss_pred HHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHH
Confidence 2477888888888766655555 999999 788889999999 899999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecchh--HHhhhcccccccCC-ceeec
Q 003258 451 ALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENA-ATEFS 494 (835)
Q Consensus 451 aL~~all~~l~~~~~~viitTH~~e--l~~~~~~~~~~~n~-~v~~~ 494 (835)
.++. +++.+.+.|.|||+|-|.+. +-..-|+...++.| .+.+.
T Consensus 968 ~i~~-~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~ 1013 (1391)
T KOG0065|consen 968 IVMR-FLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYF 1013 (1391)
T ss_pred HHHH-HHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEe
Confidence 9988 88889999999999999965 66677888777655 44443
No 420
>smart00463 SMR Small MutS-related domain.
Probab=99.43 E-value=2.1e-13 Score=119.78 Aligned_cols=74 Identities=35% Similarity=0.406 Sum_probs=69.0
Q ss_pred CceeeccccHHHHHHHHHHHHHcc--CCC-CcEEEEecccchHH--HHHHHHHhhcCCCcccccCCCCCCCceEEEEEC
Q 003258 762 NSLDLRGMRVEEASHQLDIALACW--ESR-SVLFVIHGMGTGVV--KERVLEILRNHPRVAKYEQESPMNYGCTVAYIK 835 (835)
Q Consensus 762 ~~ldlrG~r~eEA~~~vd~~ld~a--~g~-~~v~IiHG~GtG~L--r~~v~~~L~~~p~V~~f~~~~~~~~G~Tvv~~~ 835 (835)
++|||+||+++||+..|+.||+++ .+. ..++||||+|+|.+ +..|+.+|.+++.|.+|+++++.+.|+++|+++
T Consensus 2 ~~lDLHG~~~~eA~~~l~~~l~~~~~~~~~~~~~II~G~G~~s~~g~~~i~~~l~~~l~~~~~~~~~~~~~G~~~v~l~ 80 (80)
T smart00463 2 WSLDLHGLTVEEALTALDKFLNNARLKGLEQKLVIITGKGKHSLGGKSGVKPALKEHLRVESFRFAEEGNSGVLVVKLK 80 (80)
T ss_pred CeEEcCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEcccCCCccchhhHHHHHHhchhhcccccCCCCCCeEEEEEeC
Confidence 479999999999999999999996 677 79999999999999 999999999999999999999877899999974
No 421
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.42 E-value=1.6e-12 Score=147.17 Aligned_cols=159 Identities=19% Similarity=0.183 Sum_probs=116.5
Q ss_pred CCeEEEeeeeeecCC-cee---ccceeecCCceEEEEEcCCCCChhhHHhhHHhh-hhh-------c----ccceeecCC
Q 003258 324 NSEMTVGSLSKGISD-FPV---PIDIKVECETRVVVITGPNTGGKTASMKTLGLA-SLM-------S----KAGLYLPAK 387 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~-~~v---~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli-~~m-------a----~~G~~vP~~ 387 (835)
+.++++++|+..-++ ..+ ++|++++.| +-+.|+||||||||+|||++|-+ ... + +--+|+||.
T Consensus 431 Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g-~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQr 509 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNGDLLIENLSLEVPSG-QNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQR 509 (659)
T ss_pred cceEEeeeeeecCCCCCceeeeeeeeEecCC-CeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCC
Confidence 457889999987754 333 799999999 89999999999999999999433 221 1 224788988
Q ss_pred CCCCchH-----------------------HH---------HHHHHcCC-cc-cccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 388 NHPRLPW-----------------------FD---------LILADIGD-HQ-SLEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 388 ~~~~i~~-----------------------~d---------~i~~~ig~-~~-~~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
+...++- +. +++.+.|- ++ ....=..+||+|++ |+++|+.+.++|
T Consensus 510 PYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kP 589 (659)
T KOG0060|consen 510 PYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKP 589 (659)
T ss_pred CCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCC
Confidence 7433321 11 23334432 22 33334578999887 999999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccccc
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~ 487 (835)
.+.+|||-|+++|.+.-.++... +.+.|.|.|-++|...+..+=+....+.
T Consensus 590 k~AiLDE~TSAv~~dvE~~~Yr~----~r~~giT~iSVgHRkSL~kfHd~~L~~~ 640 (659)
T KOG0060|consen 590 KFAILDECTSAVTEDVEGALYRK----CREMGITFISVGHRKSLWKFHDYVLRMD 640 (659)
T ss_pred ceEEeechhhhccHHHHHHHHHH----HHHcCCeEEEeccHHHHHhhhhEEEEec
Confidence 99999999999999877777663 3445999999999988887655554443
No 422
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.41 E-value=1.2e-12 Score=163.38 Aligned_cols=168 Identities=17% Similarity=0.186 Sum_probs=130.9
Q ss_pred CCCCeEEEeeeeeecCCc--ee--ccceeecCCceEEEEEcCCCCChhhHHhhH--------Hhhhh------------h
Q 003258 322 VENSEMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL--------GLASL------------M 377 (835)
Q Consensus 322 ~g~~~l~~~~ls~~y~~~--~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i--------Gli~~------------m 377 (835)
+.+|.|+++|++.+|... .| ++||++.+| +.++|+|..|||||||+.++ |-|.+ +
T Consensus 1134 P~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~-eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1134 PSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPG-EKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred CCCCeEEEEEeEEEeCCCCcchhcCceEEEcCC-ceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHH
Confidence 356889999999999653 44 999999999 99999999999999999998 33332 1
Q ss_pred cccceeecCCCC-------CCchHHHH--------HHHHc-----------CCcccccCCcccchHHHHH-HHHHHHHcC
Q 003258 378 SKAGLYLPAKNH-------PRLPWFDL--------ILADI-----------GDHQSLEQNLSTFSGHISR-IVDILELVS 430 (835)
Q Consensus 378 a~~G~~vP~~~~-------~~i~~~d~--------i~~~i-----------g~~~~~~~~lstfSgg~~r-l~~~~~la~ 430 (835)
...-..+||++. ..+.+|++ .++.. |++..+..+-+.||.|||| ++++++++.
T Consensus 1213 RsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr 1292 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR 1292 (1381)
T ss_pred HhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc
Confidence 122247898861 12222221 12222 3445566677889999996 899999999
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCcee
Q 003258 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATE 492 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~ 492 (835)
++.+++|||.|++.|+..-..|-..|.+.++ +||||.+-|..+-..-+|++..+++|.+.
T Consensus 1293 ~skILvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl~TVmd~DrVlVld~G~v~ 1352 (1381)
T KOG0054|consen 1293 KSKILVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRLNTVMDSDRVLVLDAGRVV 1352 (1381)
T ss_pred cCCEEEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeeccchhhhcCeEEEeeCCeEe
Confidence 9999999999999999987777777777666 68999999999877779999999999875
No 423
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.40 E-value=1.4e-12 Score=148.63 Aligned_cols=163 Identities=18% Similarity=0.199 Sum_probs=119.6
Q ss_pred EEEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------------cccceeec
Q 003258 327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLYLP 385 (835)
Q Consensus 327 l~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------------a~~G~~vP 385 (835)
++++|++..- .+-++||++.+| ++++|.|-=|+|+|-++++| |.-... ..--.|+|
T Consensus 264 l~v~~l~~~~--~~~dvSf~vr~G-EIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~ 340 (500)
T COG1129 264 LEVRNLSGGG--KVRDVSFTVRAG-EILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVP 340 (500)
T ss_pred EEEecCCCCC--ceeCceeEEeCC-cEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCC
Confidence 3444444331 233899999999 99999999999999999999 422110 01112444
Q ss_pred CCCC-----CCchHHHH--------------------------HHHHcCCc-ccccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 386 AKNH-----PRLPWFDL--------------------------ILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 386 ~~~~-----~~i~~~d~--------------------------i~~~ig~~-~~~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
-+.. ..+++.++ ....++.. .+.++.+++||||-+ ++.+++-++.+|
T Consensus 341 EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p 420 (500)
T COG1129 341 EDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDP 420 (500)
T ss_pred cccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCC
Confidence 3320 11111111 22223221 467799999999976 799999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecch-hHHhhhcccccccCCceee
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-DLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~-el~~~~~~~~~~~n~~v~~ 493 (835)
++|||||||+|.|.-....|.. ++..|.+.|.+||++|-++ |+..+||+++.|.+|.+.-
T Consensus 421 ~vLilDEPTRGIDVGAK~eIy~-li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 421 KVLILDEPTRGIDVGAKAEIYR-LIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred CEEEECCCCcCcccchHHHHHH-HHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999999 8888888899888888775 5888999999999998763
No 424
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.40 E-value=9.9e-13 Score=143.30 Aligned_cols=146 Identities=21% Similarity=0.297 Sum_probs=109.0
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-HhhhhhcccceeecCCCC-----------------CCc---hHHHHH--
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNH-----------------PRL---PWFDLI-- 398 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma~~G~~vP~~~~-----------------~~i---~~~d~i-- 398 (835)
++||++.+| ++++|+|++|+||||+|++| |....... -.|.|.+|. +.+ .+.+++
T Consensus 401 ~vNL~ikpG-dvvaVvGqSGaGKttllRmi~G~~~~~~e-e~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s 478 (593)
T COG2401 401 NLNLEIKPG-DVVAVVGQSGAGKTTLLRMILGAQKGRGE-EKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRS 478 (593)
T ss_pred ceeeEecCC-CeEEEEecCCCCcchHHHHHHHHhhcccc-cccCCCCCceeccccchhhccCcccccccCchhHHHHHhh
Confidence 899999999 99999999999999999999 33322111 013344431 122 133444
Q ss_pred -----------HHHcCCccc--ccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCC
Q 003258 399 -----------LADIGDHQS--LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV 464 (835)
Q Consensus 399 -----------~~~ig~~~~--~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~ 464 (835)
+.+.|+.+. .-...+.||.||+ |..+|..++.+|++++.||.+++||+.+...++..+-+...+.+
T Consensus 479 ~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~g 558 (593)
T COG2401 479 KTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAG 558 (593)
T ss_pred ccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhC
Confidence 444444442 3468899999999 99999999999999999999999999999999998887777889
Q ss_pred cEEEEEecchhHHh-h-hcccccccCC
Q 003258 465 GLAVVTTHYADLSC-L-KDKDTRFENA 489 (835)
Q Consensus 465 ~~viitTH~~el~~-~-~~~~~~~~n~ 489 (835)
.|++++||..++.. + -|..+.+.-|
T Consensus 559 iTlivvThrpEv~~AL~PD~li~vgYg 585 (593)
T COG2401 559 ITLIVVTHRPEVGNALRPDTLILVGYG 585 (593)
T ss_pred CeEEEEecCHHHHhccCCceeEEeecc
Confidence 99999999999554 4 3444444333
No 425
>PF05192 MutS_III: MutS domain III C-terminus.; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A ....
Probab=99.39 E-value=1.7e-12 Score=133.02 Aligned_cols=169 Identities=28% Similarity=0.312 Sum_probs=131.9
Q ss_pred CchHHHhhcCCCCCCCHHHHHHHHHHHHHHHH--HH-hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 003258 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--MM-QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (835)
Q Consensus 1 mG~~~l~~~~l~p~~~~~~i~~~l~~~~e~~~--~~-~~~~~~l~~~~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~ 77 (835)
||+++|+.|+++|+.|.++|+.+++.++++.. .+ .....+|.+++|+++++.++..|.. ++.+|..+..++..+..
T Consensus 33 ~Gkr~L~~~l~~P~~d~~~I~~R~~~v~~~~~n~~~~~~~~~~l~~~~di~~~l~~l~~~~~-~~~~~~~l~~~l~~~~~ 111 (204)
T PF05192_consen 33 MGKRLLRSWLLQPLTDIEEIEKRQDAVEEFLQNEELREELRSILKKIPDIERILKRLRSGRA-SPQDLLKLYKTLRSIIE 111 (204)
T ss_dssp HHHHHHHHHHHS-BS-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC-SHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhhhHhhhhhhhhhccchHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999996 22 3344578899999999999988875 89999999999999999
Q ss_pred HHHHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003258 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVA 157 (835)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~i~~~id~~~~~i~d~aS~~L~~lR~~~~~~~~~l~~~l~~~~ 157 (835)
+++++..... ..|.|..+...+++++.+.+.|.++||++.. ..+..+
T Consensus 112 i~~~~~~~~~-------~~~~L~~l~~~l~~~~~l~~~i~~~id~~~~-~~~~~~------------------------- 158 (204)
T PF05192_consen 112 IKKLLSERLE-------SSPLLRKLLSSLPDFSELLDEIESTIDEDKS-LAIREQ------------------------- 158 (204)
T ss_dssp HHHHHHCTSS-------STHHHHHHHHHHCSHHHHHHHHHHHBHTS-C-CHCTTS-------------------------
T ss_pred HHHHHHhhcc-------cHHHHHHHHHhcccHHHHHHHHHHHHhcCcH-HHHhcc-------------------------
Confidence 9998653211 1256777777777788888888888887521 110000
Q ss_pred HHHHHhcCCCCcceeeccCcEEEEEecccccCCCCcEEEEEccCCcEEEeccchhhhhhHHHHHHhHHHHHHHHHHHHHH
Q 003258 158 AQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLL 237 (835)
Q Consensus 158 ~~~~~~~~~~~~~i~~r~~r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~iep~~~v~lnn~~~~l~~~e~~ee~~il~~L 237 (835)
.+| +. +..++.+|+.+|
T Consensus 159 -----------~~I--~~--------------------------------------------------~~~~~~~i~~~L 175 (204)
T PF05192_consen 159 -----------DII--RD--------------------------------------------------INDEEQRILREL 175 (204)
T ss_dssp -----------SSB--ST--------------------------------------------------HHHHHHHHHHHH
T ss_pred -----------cHH--HH--------------------------------------------------HHHHHHHHHHHH
Confidence 000 00 567788999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 003258 238 TAEIAKSEREIKYLMDRVLEIDLAFARAG 266 (835)
Q Consensus 238 ~~~i~~~~~~l~~~~~~l~~lD~l~a~a~ 266 (835)
+..|..+.+.+..+.+++++||+++|+|+
T Consensus 176 ~~~i~~~~~~l~~~~~~i~eLD~l~s~A~ 204 (204)
T PF05192_consen 176 TNEIRKYSPELRELSEAIAELDVLISFAK 204 (204)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999985
No 426
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.7e-12 Score=142.18 Aligned_cols=166 Identities=15% Similarity=0.194 Sum_probs=121.1
Q ss_pred CeEEEeeeeeecCC-cee--ccceeecCCceEEEEEcCCCCChhhHHhhH--------Hhhhh------------hcccc
Q 003258 325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL--------GLASL------------MSKAG 381 (835)
Q Consensus 325 ~~l~~~~ls~~y~~-~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i--------Gli~~------------ma~~G 381 (835)
+.+.+.+++|.|.. +++ +++|+++.| +.++|+||.|+||||+++.+ |-+.+ +.++.
T Consensus 261 g~v~F~~V~F~y~~~r~iL~~isf~i~~g-~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aI 339 (497)
T COG5265 261 GAVAFINVSFAYDPRRPILNGISFTIPLG-KTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAI 339 (497)
T ss_pred ceEEEEEEEeeccccchhhcCccccccCc-cEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHh
Confidence 56778999999965 444 999999999 99999999999999999999 43332 22334
Q ss_pred eeecCCCCCCchH--HH------------HH------------HHHc--CCcccccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 382 LYLPAKNHPRLPW--FD------------LI------------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 382 ~~vP~~~~~~i~~--~d------------~i------------~~~i--g~~~~~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
..+|++. +-+.- +. ++ +..+ |..--+-..--.+|||++ |++.++.++.+|
T Consensus 340 g~VPQDt-vLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p 418 (497)
T COG5265 340 GIVPQDT-VLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNP 418 (497)
T ss_pred CcCcccc-eehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCC
Confidence 4677764 21110 00 00 1110 000111122236899999 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
++++|||.||.||...-.+|..++-+ .. .|.|.+++-|.+....-||.++.++||.+...
T Consensus 419 ~il~~deatsaldt~te~~iq~~l~~-~~-~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 419 PILILDEATSALDTHTEQAIQAALRE-VS-AGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred CEEEEehhhhHhhhhHHHHHHHHHHH-Hh-CCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 99999999999999999988885544 33 47899999999887677899999999987643
No 427
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=3.8e-12 Score=137.76 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=61.8
Q ss_pred ccchHHHH-HHHHHHHHc--C--CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccccc
Q 003258 413 STFSGHIS-RIVDILELV--S--RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (835)
Q Consensus 413 stfSgg~~-rl~~~~~la--~--~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~ 487 (835)
.+||+||+ |++++++.+ . +|+++|||||++|+|+.....+...+.+ +.. +.++|++||+..+..+|++.+.+.
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~-~~~-~~tii~isH~~~~~~~~d~~~~l~ 246 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKE-LSR-SHQVLCITHLPQVAAMADNHFLVE 246 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHH-HhC-CCEEEEEechHHHHHhcCcEEEEE
Confidence 35999999 788776533 3 9999999999999999999999995544 444 689999999998888999888776
Q ss_pred CC
Q 003258 488 NA 489 (835)
Q Consensus 488 n~ 489 (835)
++
T Consensus 247 ~~ 248 (276)
T cd03241 247 KE 248 (276)
T ss_pred Ee
Confidence 65
No 428
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.33 E-value=1.7e-10 Score=129.25 Aligned_cols=155 Identities=18% Similarity=0.156 Sum_probs=109.0
Q ss_pred EEEeeeeeecCC-ce-e-ccceeecCCceEEEEEcCCCCChhhHHhhHH-hhhh--------hcccceeecCCCCCCchH
Q 003258 327 MTVGSLSKGISD-FP-V-PIDIKVECETRVVVITGPNTGGKTASMKTLG-LASL--------MSKAGLYLPAKNHPRLPW 394 (835)
Q Consensus 327 l~~~~ls~~y~~-~~-v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~iG-li~~--------ma~~G~~vP~~~~~~i~~ 394 (835)
|.++|+..--++ .+ | .++|.+++| ..+.||||||||||+|++++| |-.+ --+.-+|+||.+....+-
T Consensus 482 I~lenIpvItP~~~vvv~~Ltf~i~~G-~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gt 560 (728)
T KOG0064|consen 482 IILENIPVITPAGDVLVPKLTFQIEPG-MHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGT 560 (728)
T ss_pred eEEecCceeccCcceeecceeEEecCC-ceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCc
Confidence 556676654432 22 3 789999999 889999999999999999994 4322 223346788876433221
Q ss_pred -----------------------HHHHHHHcCCc---------ccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCC
Q 003258 395 -----------------------FDLILADIGDH---------QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (835)
Q Consensus 395 -----------------------~d~i~~~ig~~---------~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~ 441 (835)
...|+..+.++ +.+..=-..||||++ |+..|+.+-++|...+|||-|
T Consensus 561 lRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcT 640 (728)
T KOG0064|consen 561 LRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECT 640 (728)
T ss_pred ccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhh
Confidence 11222222222 112222346899999 899999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccc
Q 003258 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 486 (835)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~ 486 (835)
+...++.-..+.++.-.+ |.+.|-+||...+..+-.+...+
T Consensus 641 sAvsidvE~~i~~~ak~~----gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 641 SAVSIDVEGKIFQAAKDA----GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred cccccchHHHHHHHHHhc----CceEEEeecCccHHHHHHHHHhc
Confidence 999998877777755444 89999999999887765554443
No 429
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.26 E-value=3.4e-11 Score=154.41 Aligned_cols=89 Identities=27% Similarity=0.151 Sum_probs=76.6
Q ss_pred HHHcCCcc-cccCCcccchHHHH-HHHHHHHHcCC---CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 003258 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 399 ~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~~---~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~ 473 (835)
+.++|+.- .+-++.+|||||+. |+.++..+..+ +.|+||||||.||++.+...|.. ++..|.+.|.|||++.|+
T Consensus 1683 L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~-~l~~L~~~g~tvivieH~ 1761 (1809)
T PRK00635 1683 LIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV-QLRTLVSLGHSVIYIDHD 1761 (1809)
T ss_pred HHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH-HHHHHHhcCCeEEEEeCC
Confidence 45566553 46789999999998 89999888654 78999999999999999999999 788899999999999999
Q ss_pred hhHHhhhcccccccC
Q 003258 474 ADLSCLKDKDTRFEN 488 (835)
Q Consensus 474 ~el~~~~~~~~~~~n 488 (835)
.++...||.++-+..
T Consensus 1762 ~~~i~~aD~iidlgp 1776 (1809)
T PRK00635 1762 PALLKQADYLIEMGP 1776 (1809)
T ss_pred HHHHHhCCEEEEcCC
Confidence 998888998887654
No 430
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.25 E-value=5e-11 Score=139.54 Aligned_cols=87 Identities=26% Similarity=0.271 Sum_probs=73.9
Q ss_pred HHHcCCcc-cccCCcccchHHHH-HHHHHHHHcC---CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 003258 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVS---RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 399 ~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~---~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~ 473 (835)
+.++|+.- .+-++..|||||+. |+.+|..+.. ...|+||||||.||-+.+-..|.. ++..|.+.|-|||++-|.
T Consensus 806 L~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~-VL~rLvd~GnTViVIEHN 884 (935)
T COG0178 806 LVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLE-VLHRLVDKGNTVIVIEHN 884 (935)
T ss_pred HHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecc
Confidence 45556542 35688999999998 8999977654 559999999999999999999999 888899999999999999
Q ss_pred hhHHhhhcccccc
Q 003258 474 ADLSCLKDKDTRF 486 (835)
Q Consensus 474 ~el~~~~~~~~~~ 486 (835)
+++...||.++-+
T Consensus 885 LdVIk~AD~IIDL 897 (935)
T COG0178 885 LDVIKTADWIIDL 897 (935)
T ss_pred cceEeecCEEEEc
Confidence 9988888877655
No 431
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.16 E-value=3.9e-11 Score=120.02 Aligned_cols=72 Identities=35% Similarity=0.482 Sum_probs=66.3
Q ss_pred CceeeccccHHHHHHHHHHHHHcc--CCCCcEEEEeccc-----chHHHHHHHHHhhcCCCcccccCCCCCCCceEEEE
Q 003258 762 NSLDLRGMRVEEASHQLDIALACW--ESRSVLFVIHGMG-----TGVVKERVLEILRNHPRVAKYEQESPMNYGCTVAY 833 (835)
Q Consensus 762 ~~ldlrG~r~eEA~~~vd~~ld~a--~g~~~v~IiHG~G-----tG~Lr~~v~~~L~~~p~V~~f~~~~~~~~G~Tvv~ 833 (835)
..|||.|||.+||-.+|..||-.| .|+.-|.|||||| +|+||+.|..||..||.|..|..+++..||.+-+|
T Consensus 97 ~~LDLHG~tq~eAr~~L~~Fi~~a~~~~~rcv~VihGkG~s~g~~~vLK~~Vp~WL~qhp~V~a~~~a~~~hGG~GAly 175 (184)
T COG2840 97 ARLDLHGLTQEEARQELGAFIARARAEGLRCVLVIHGKGRSKGSKPVLKSQVPRWLTQHPDVLAFHQAPRRHGGDGALY 175 (184)
T ss_pred eeeeccCCCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCcCCCCchhHHHHHHHHHHhChHHHhhcccchhcCCceEEE
Confidence 479999999999999999999997 7899999999999 99999999999999999999999999987654444
No 432
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.15 E-value=7e-11 Score=118.84 Aligned_cols=146 Identities=14% Similarity=0.206 Sum_probs=106.8
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh---------------------------hhcccceeecCCCCCCch
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---------------------------LMSKAGLYLPAKNHPRLP 393 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~---------------------------~ma~~G~~vP~~~~~~i~ 393 (835)
.+|+++..| ++-+++|.+|||||-..|.| |.+. +.++-...+++++.+-+.
T Consensus 25 ~v~ltlnEG-Ei~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLD 103 (330)
T COG4170 25 RVSMTLNEG-EIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLD 103 (330)
T ss_pred eeeeeeccc-eeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcC
Confidence 899999999 99999999999999999999 3321 011211222222211111
Q ss_pred H------------------------H-------HHHHHHcCCcc---cccCCcccchHHHH-HHHHHHHHcCCCcEEEEe
Q 003258 394 W------------------------F-------DLILADIGDHQ---SLEQNLSTFSGHIS-RIVDILELVSRESLVLID 438 (835)
Q Consensus 394 ~------------------------~-------d~i~~~ig~~~---~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLD 438 (835)
. | -.++.++|+.+ -...++..|.-|+- ++.++++++..|.|+|.|
T Consensus 104 PS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIAD 183 (330)
T COG4170 104 PSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIAD 183 (330)
T ss_pred hHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEecc
Confidence 0 1 13466777654 34567778887776 688889999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCC
Q 003258 439 EIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENA 489 (835)
Q Consensus 439 Ep~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~ 489 (835)
|||+.++|.....+.. ++..+.+ .|.++++++||.. +...|+++-.+--|
T Consensus 184 EPTN~~e~~Tq~QifR-LLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCG 235 (330)
T COG4170 184 EPTNSMEPTTQAQIFR-LLSRLNQNSNTTILLISHDLQMISQWADKINVLYCG 235 (330)
T ss_pred CCCcccCccHHHHHHH-HHHHhhccCCceEEEEcccHHHHHHHhhheEEEEec
Confidence 9999999999999999 6666665 4778999999976 77889887665443
No 433
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.15 E-value=2.6e-10 Score=119.02 Aligned_cols=71 Identities=21% Similarity=0.222 Sum_probs=50.4
Q ss_pred cchHHHH-HHHHHHH----HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccc
Q 003258 414 TFSGHIS-RIVDILE----LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 486 (835)
Q Consensus 414 tfSgg~~-rl~~~~~----la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~ 486 (835)
.|||||+ .+++++. ...+.+++|||||.++||+.....++. ++..+.+ ++-+|++||...+...++..+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~-~l~~~~~-~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLAD-LLKELSK-QSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHH-HHHHHTT-TSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc-ccccccc-ccccccccccccccccccccccc
Confidence 9999999 5555533 346778999999999999999999998 4455543 47899999999988888877654
No 434
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.11 E-value=1.6e-10 Score=124.69 Aligned_cols=76 Identities=22% Similarity=0.171 Sum_probs=53.7
Q ss_pred CcccchHHHH-HHHHHHHHc---------CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecc-hhHHhh
Q 003258 411 NLSTFSGHIS-RIVDILELV---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY-ADLSCL 479 (835)
Q Consensus 411 ~lstfSgg~~-rl~~~~~la---------~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~-~el~~~ 479 (835)
..+.+|+||+ ++.++++++ .+|+++|||||+++|||.....+...+.+. + .++++||+ ..+..+
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~~~~~~~ 254 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTDLADFDAL 254 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCCchhccch
Confidence 3556899999 677776653 799999999999999999999887744332 3 34555554 556666
Q ss_pred h---cccccccCCce
Q 003258 480 K---DKDTRFENAAT 491 (835)
Q Consensus 480 ~---~~~~~~~n~~v 491 (835)
| .+++.+.+|.+
T Consensus 255 ~~~~~~i~~l~~g~i 269 (270)
T cd03242 255 WLRRAQIFRVDAGTL 269 (270)
T ss_pred hccCccEEEEeCcEE
Confidence 6 44555666553
No 435
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.04 E-value=4.8e-10 Score=138.02 Aligned_cols=95 Identities=24% Similarity=0.214 Sum_probs=82.0
Q ss_pred HHHcCCccc-ccCCcccchHHHH-HHHHHHHHcCCC--cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 003258 399 LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 399 ~~~ig~~~~-~~~~lstfSgg~~-rl~~~~~la~~~--~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~ 474 (835)
+.++|+... +++.+++|||||+ |+.++.+++.+| .++||||||+||||.+...|.. ++..+.+.|.|||++||+.
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~-~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIN-TLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHH-HHHHHHhCCCEEEEEECCH
Confidence 556777654 7899999999999 899999998875 8999999999999999999999 6667788899999999999
Q ss_pred hHHhhhcccccc------cCCceeec
Q 003258 475 DLSCLKDKDTRF------ENAATEFS 494 (835)
Q Consensus 475 el~~~~~~~~~~------~n~~v~~~ 494 (835)
++...||+++.+ .+|.+.+.
T Consensus 550 ~~i~~aD~vi~LgpgaG~~~G~Iv~~ 575 (924)
T TIGR00630 550 ETIRAADYVIDIGPGAGIHGGEVVAS 575 (924)
T ss_pred HHHhhCCEEEEecccccCCCCEEeec
Confidence 866799999999 67777654
No 436
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.02 E-value=1.9e-09 Score=121.15 Aligned_cols=169 Identities=19% Similarity=0.257 Sum_probs=127.7
Q ss_pred CCCCeEEEeeeeeecCC--cee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc------------
Q 003258 322 VENSEMTVGSLSKGISD--FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS------------ 378 (835)
Q Consensus 322 ~g~~~l~~~~ls~~y~~--~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma------------ 378 (835)
.|...+++++|+..-.. ..+ ++||++..| ++++|.|-.|-|-+.|+..| |+-.. ..
T Consensus 253 pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~G-EIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~ 331 (501)
T COG3845 253 PGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAG-EIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRER 331 (501)
T ss_pred CCCeEEEEeeeEeecCCCCceeeeeeeEEecC-cEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHH
Confidence 35678999999987644 334 999999999 99999999999999999999 44311 00
Q ss_pred -ccc-eeecCCCC-----CCchHHHH----------------------------HHHHcCCc-ccccCCcccchHHHH-H
Q 003258 379 -KAG-LYLPAKNH-----PRLPWFDL----------------------------ILADIGDH-QSLEQNLSTFSGHIS-R 421 (835)
Q Consensus 379 -~~G-~~vP~~~~-----~~i~~~d~----------------------------i~~~ig~~-~~~~~~lstfSgg~~-r 421 (835)
..| .|+|.+.. ..++.+++ +...++.. .+...+..+||||.+ +
T Consensus 332 r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK 411 (501)
T COG3845 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQK 411 (501)
T ss_pred HhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceeh
Confidence 011 23443320 11222222 23333332 455677899999977 7
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCcee
Q 003258 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (835)
Q Consensus 422 l~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~ 492 (835)
+.+++.+..+|+|||+..||.|+|....+.+...+++ +.+.|+.|+++|-+++ +..+||++..+.+|.+.
T Consensus 412 ~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e-~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~ 482 (501)
T COG3845 412 LILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLE-LRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482 (501)
T ss_pred hhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHH-HHhcCCEEEEEehhHHHHHHhhheeeeeeCCcee
Confidence 9999999999999999999999999999999997776 5777899999999976 88999999999999875
No 437
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.00 E-value=7.5e-10 Score=136.62 Aligned_cols=95 Identities=25% Similarity=0.216 Sum_probs=82.1
Q ss_pred HHHcCCccc-ccCCcccchHHHH-HHHHHHHHcCCC--cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 003258 399 LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 399 ~~~ig~~~~-~~~~lstfSgg~~-rl~~~~~la~~~--~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~ 474 (835)
+..+|+... +++.+.+|||||+ |+.++.+++.+| .++||||||+||||.+...|.. ++..+.+.|.|||++||+.
T Consensus 473 L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~-~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 473 LVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIE-TLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred hhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCH
Confidence 566777754 7999999999999 799999998886 8999999999999999999999 6666788899999999998
Q ss_pred hHHhhhcccccc------cCCceeec
Q 003258 475 DLSCLKDKDTRF------ENAATEFS 494 (835)
Q Consensus 475 el~~~~~~~~~~------~n~~v~~~ 494 (835)
+....||+++.+ .+|.+.+.
T Consensus 552 ~~i~~aD~vi~LgpgaG~~~G~iv~~ 577 (943)
T PRK00349 552 DTIRAADYIVDIGPGAGVHGGEVVAS 577 (943)
T ss_pred HHHHhCCEEEEeccccCCCCCEEeec
Confidence 866679999988 67776553
No 438
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.99 E-value=6.8e-10 Score=121.86 Aligned_cols=136 Identities=21% Similarity=0.298 Sum_probs=104.0
Q ss_pred ccceeecCC----ceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchH-----------------------
Q 003258 342 PIDIKVECE----TRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW----------------------- 394 (835)
Q Consensus 342 ~isl~l~~g----~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~----------------------- 394 (835)
+..+.+..| .++++.+|.||.|||||++++ +|...|..+ ..+|.
T Consensus 354 ~F~L~i~~GefsdSeiivmlgEngtgkTTfi~ml--------ag~~~pd~~-~e~p~lnVSykpqkispK~~~tvR~ll~ 424 (592)
T KOG0063|consen 354 DFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRML--------AGRLKPDEG-GEIPVLNVSYKPQKISPKREGTVRQLLH 424 (592)
T ss_pred eEEEEEeecccCCceeEEEEccCCcchhHHHHHH--------hcCCCCCcc-CcccccceeccccccCccccchHHHHHH
Confidence 455555443 489999999999999999999 665444443 11111
Q ss_pred ------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHh
Q 003258 395 ------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 461 (835)
Q Consensus 395 ------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~ 461 (835)
+.+++.-+-.++.+++.+-+||||+. |+++++.+-.+.+++|+|||.+-+|.+.+..-+.-+-+++.
T Consensus 425 ~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfil 504 (592)
T KOG0063|consen 425 TKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFIL 504 (592)
T ss_pred HHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHH
Confidence 22233344556788999999999987 89999999999999999999999999999888886777777
Q ss_pred cCCcEEEEEecchhHHh-hhcccccc
Q 003258 462 DRVGLAVVTTHYADLSC-LKDKDTRF 486 (835)
Q Consensus 462 ~~~~~viitTH~~el~~-~~~~~~~~ 486 (835)
..+.|-+++-||.-+.. ++++++.+
T Consensus 505 hakktafvVEhdfImaTYladrvivf 530 (592)
T KOG0063|consen 505 HAKKTAFVVEHDFIMATYLADRVIVF 530 (592)
T ss_pred hccchhhhhhhHHHHHHhhcceeEEE
Confidence 77889999999977664 56666544
No 439
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.93 E-value=4.9e-09 Score=104.39 Aligned_cols=69 Identities=22% Similarity=0.246 Sum_probs=59.6
Q ss_pred cCCcccchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh
Q 003258 409 EQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC 478 (835)
Q Consensus 409 ~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~ 478 (835)
...+...|-|+-=+.++..-.++.-+.|||||-++|.|.-+..|+. ++..+.+.|+-+||+||..-+..
T Consensus 124 ~~sLh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella-~l~~la~sGaQ~IiATHSPiLlA 192 (233)
T COG3910 124 GRSLHHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLA-ILRDLADSGAQIIIATHSPILLA 192 (233)
T ss_pred CcchhhhccchHHHHHHHHHhccCceEEecCccccCCHHHHHHHHH-HHHHHHhcCCeEEEEecChhhee
Confidence 3457788888888888877788899999999999999999999887 88889999999999999976544
No 440
>PRK13695 putative NTPase; Provisional
Probab=98.90 E-value=2.2e-09 Score=108.10 Aligned_cols=133 Identities=19% Similarity=0.204 Sum_probs=80.4
Q ss_pred EEEEEcCCCCChhhHHhhH-Hhhhh--hcccceeecCCC---CCCch--H---H---HHHHHHcCC--cccccCCcccch
Q 003258 353 VVVITGPNTGGKTASMKTL-GLASL--MSKAGLYLPAKN---HPRLP--W---F---DLILADIGD--HQSLEQNLSTFS 416 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i-Gli~~--ma~~G~~vP~~~---~~~i~--~---~---d~i~~~ig~--~~~~~~~lstfS 416 (835)
.++|+|+||+|||||++.+ +.+.. ...+| +..... ....+ . . ...+...+. .+.+.+....+|
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ls 80 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGG-FYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNLE 80 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE-EEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEehH
Confidence 4789999999999999987 22211 00011 111100 00000 0 0 011222221 223445567788
Q ss_pred HHHH-HHHHHHHHcCCCcEEEEeCCCC--CCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCce
Q 003258 417 GHIS-RIVDILELVSRESLVLIDEIGS--GTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT 491 (835)
Q Consensus 417 gg~~-rl~~~~~la~~~~LlLLDEp~~--glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v 491 (835)
+.++ ....+...+.+|+++|+|||+. ++|+.....|.. +.+.+.++|+|+|+..+..+++++..+.++.+
T Consensus 81 gle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~-----~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i 153 (174)
T PRK13695 81 DLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEE-----VLDSEKPVIATLHRRSVHPFVQEIKSRPGGRV 153 (174)
T ss_pred HHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHH-----HHhCCCeEEEEECchhhHHHHHHHhccCCcEE
Confidence 8888 5666666778999999999643 555444443333 22458899999999878888888888877755
No 441
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.90 E-value=5.3e-09 Score=112.63 Aligned_cols=113 Identities=20% Similarity=0.222 Sum_probs=66.7
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCC-----CchHHH---HHHHHc-CCcc-cccCCcccchHHHH-
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP-----RLPWFD---LILADI-GDHQ-SLEQNLSTFSGHIS- 420 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~-----~i~~~d---~i~~~i-g~~~-~~~~~lstfSgg~~- 420 (835)
.-++|+||||+||||||+++ +|...|..|.. .+..++ ++...+ +..| .+....+.|-+-.+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l--------~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~ 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDL--------ARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKA 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHH--------hCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHH
Confidence 46899999999999999999 77777765522 222222 232222 1121 12222233333222
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhh
Q 003258 421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK 480 (835)
Q Consensus 421 rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~ 480 (835)
.-...+..+.+|+++|+|||++. ....++++.+. .|.++|+|||+..+..++
T Consensus 184 ~~~~~~i~~~~P~villDE~~~~-------e~~~~l~~~~~-~G~~vI~ttH~~~~~~~~ 235 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGRE-------EDVEALLEALH-AGVSIIATAHGRDVEDLY 235 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcH-------HHHHHHHHHHh-CCCEEEEEechhHHHHHH
Confidence 11122334579999999999742 22333555554 589999999987664443
No 442
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.75 E-value=2.2e-08 Score=101.22 Aligned_cols=119 Identities=16% Similarity=0.118 Sum_probs=78.5
Q ss_pred EEEEcCCCCChhhHHhhHHhhhh-hcccceeecCCCCCCchHHHHHHH----------HcCCcccccCCcccchHHHHH-
Q 003258 354 VVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILA----------DIGDHQSLEQNLSTFSGHISR- 421 (835)
Q Consensus 354 ~~I~GpNGsGKSTlLK~iGli~~-ma~~G~~vP~~~~~~i~~~d~i~~----------~ig~~~~~~~~lstfSgg~~r- 421 (835)
++|.||.|+|||||.-.+..-.. .+...+|+..+.+ ..-+.+.+. ..|.....+..+..+|+++.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~--~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~ 79 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES--PEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC--HHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence 68999999999999887733222 2234455554431 111222222 233334556777788888765
Q ss_pred ----HHHH--HHHcCCCcEEEEeCCCCCCC---HHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003258 422 ----IVDI--LELVSRESLVLIDEIGSGTD---PSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (835)
Q Consensus 422 ----l~~~--~~la~~~~LlLLDEp~~glD---p~~~~aL~~all~~l~~~~~~viitTH~~e 475 (835)
+..+ .....+|+++++|||++.+| +.....+.. ++..+.+.|.++|+++|...
T Consensus 80 ~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~-l~~~l~~~g~tvi~v~~~~~ 141 (187)
T cd01124 80 RLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRR-LLFALKRFGVTTLLTSEQSG 141 (187)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHH-HHHHHHHCCCEEEEEecccc
Confidence 1222 22456899999999999999 666666655 77778878999999999865
No 443
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.74 E-value=5.9e-08 Score=102.44 Aligned_cols=132 Identities=12% Similarity=0.225 Sum_probs=76.0
Q ss_pred EEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhH-HhhH-HhhhhhcccceeecCCCCCCchHHHHHHHHcCCc
Q 003258 328 TVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTAS-MKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDH 405 (835)
Q Consensus 328 ~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTl-LK~i-Gli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~ 405 (835)
.++++.+.+++ -+++| ++++|+||||+||||| ++.+ +++ -....+.|+..+.. .-.+..++ ..+|..
T Consensus 9 ~~~~ld~~l~g-------gi~~g-~~~~i~G~~G~GKTtl~~~~~~~~~-~~g~~~~yi~~e~~-~~~~~~~~-~~~g~~ 77 (230)
T PRK08533 9 SRDELHKRLGG-------GIPAG-SLILIEGDESTGKSILSQRLAYGFL-QNGYSVSYVSTQLT-TTEFIKQM-MSLGYD 77 (230)
T ss_pred EEeeeehhhCC-------CCCCC-cEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEeCCCC-HHHHHHHH-HHhCCc
Confidence 34455555443 25778 8999999999999999 4655 322 22334456665442 22223332 334431
Q ss_pred c--c--------ccCCcccchHHHH---HHHHHHHH--cCCCcEEEEeCCCCCC----CHHhHHHHHHHHHHHHhcCCcE
Q 003258 406 Q--S--------LEQNLSTFSGHIS---RIVDILEL--VSRESLVLIDEIGSGT----DPSEGVALATSILQYLRDRVGL 466 (835)
Q Consensus 406 ~--~--------~~~~lstfSgg~~---rl~~~~~l--a~~~~LlLLDEp~~gl----Dp~~~~aL~~all~~l~~~~~~ 466 (835)
- . +.-. ..+|+... .+..++.. ..+|+++++|||++++ |+.....+.. ++..+.+.|.+
T Consensus 78 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~-~l~~l~~~g~t 155 (230)
T PRK08533 78 INKKLISGKLLYIPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMA-FFKRISSLNKV 155 (230)
T ss_pred hHHHhhcCcEEEEEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHH-HHHHHHhCCCE
Confidence 1 0 1111 12343322 23333332 3579999999999999 7776777766 66777777776
Q ss_pred EEEEec
Q 003258 467 AVVTTH 472 (835)
Q Consensus 467 viitTH 472 (835)
+++|+|
T Consensus 156 vi~t~~ 161 (230)
T PRK08533 156 IILTAN 161 (230)
T ss_pred EEEEec
Confidence 665544
No 444
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.72 E-value=2.6e-08 Score=103.15 Aligned_cols=65 Identities=29% Similarity=0.315 Sum_probs=46.5
Q ss_pred CcccchHHHHHH-HHHHHHcC--CC-cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhH
Q 003258 411 NLSTFSGHISRI-VDILELVS--RE-SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL 476 (835)
Q Consensus 411 ~lstfSgg~~rl-~~~~~la~--~~-~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el 476 (835)
+++.+|.|++++ .++..+.. .. .++++|||-+||.|.....|.. ++..+...+.-+|+|||...+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~-~l~~~~~~~~QviitTHSp~i 301 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIE-LLKELSKKNIQVIITTHSPFI 301 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHH-HHHHTGGGSSEEEEEES-GGG
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHH-HHHhhCccCCEEEEeCccchh
Confidence 456679999976 55544333 33 8999999999999999999987 555555557789999999764
No 445
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.61 E-value=1.5e-07 Score=111.93 Aligned_cols=115 Identities=19% Similarity=0.264 Sum_probs=83.4
Q ss_pred ccchHHHH-HHHHHHHHcCC----CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccccc
Q 003258 413 STFSGHIS-RIVDILELVSR----ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487 (835)
Q Consensus 413 stfSgg~~-rl~~~~~la~~----~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~ 487 (835)
.++||||+ |+.++++++.. |+++|||||++|+|+.....+.. ++..+.+ +.+||++||++.+..+|++++.+.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~-~l~~l~~-~~~vi~iTH~~~~~~~ad~~~~l~ 516 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAK-KLAQLSE-RHQVLCVTHLPQVAAHADAHFKVE 516 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhc-CCEEEEEEChHHHHHhcCeEEEEE
Confidence 58999999 89999887664 68999999999999999999998 5555664 789999999999888999998887
Q ss_pred CCceeecccccccchhcccCCCCCchHHHHHHHcC-C--CHHHHHHHHHHH
Q 003258 488 NAATEFSLETLRPTYRILWGSTGDSNALNIAKSIG-F--DRKIIQRAQKLV 535 (835)
Q Consensus 488 n~~v~~~~~~l~~~Y~l~~g~~~~s~a~~ia~~~g-~--~~~ii~~A~~~~ 535 (835)
++.. ...+...... ..+...-.+||+++| . .+..+..|++.+
T Consensus 517 k~~~--~~~t~s~i~~----L~~~~r~~EiArml~G~~~t~~~~~~A~~ll 561 (563)
T TIGR00634 517 KEGL--DGRTATRVRP----LSGEERVAELARMLAGLEKSDLTLAHAQELL 561 (563)
T ss_pred EccC--CCcEEEEEEE----CCccHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 6532 1112111111 123345568999884 2 445566666654
No 446
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.58 E-value=3.1e-07 Score=89.64 Aligned_cols=121 Identities=13% Similarity=0.119 Sum_probs=69.9
Q ss_pred EEEEEcCCCCChhhHHhhH-HhhhhhcccceeecCCCCCCchHHHHH--HHHcCCccc---ccCCcccchHH-HHHHHHH
Q 003258 353 VVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLI--LADIGDHQS---LEQNLSTFSGH-ISRIVDI 425 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i-Gli~~ma~~G~~vP~~~~~~i~~~d~i--~~~ig~~~~---~~~~lstfSgg-~~rl~~~ 425 (835)
+++|+||||+||||+++.+ +........-.|+..+.. ........ +...+..+. ........+.. ..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE-IEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc-hHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence 3689999999999999999 333222223344444431 11111111 111111111 11111222232 2356666
Q ss_pred HHHcCCCcEEEEeCCCCCC----------CHHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003258 426 LELVSRESLVLIDEIGSGT----------DPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (835)
Q Consensus 426 ~~la~~~~LlLLDEp~~gl----------Dp~~~~aL~~all~~l~~~~~~viitTH~~e 475 (835)
.....++.++++|||++-+ ++.....+.. +...+.+.+.++|+++|...
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRE-LLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHH-HHHHHhcCCceEEEEEecCC
Confidence 7778899999999999544 3333444444 77777777899999999864
No 447
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.57 E-value=9.4e-08 Score=105.38 Aligned_cols=122 Identities=20% Similarity=0.232 Sum_probs=93.8
Q ss_pred CCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC----------------------------------CCchH
Q 003258 349 CETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH----------------------------------PRLPW 394 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~----------------------------------~~i~~ 394 (835)
+| ++++++|.||-||||.||.+ +|-..|.-|. ....+
T Consensus 99 pg-~vlglvgtngigkstAlkil--------agk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQy 169 (592)
T KOG0063|consen 99 PG-QVLGLVGTNGIGKSTALKIL--------AGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQY 169 (592)
T ss_pred cc-hhccccccCcccHHHHHHHH--------hCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHH
Confidence 46 89999999999999999999 4444333321 11112
Q ss_pred HHH------------------------HHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhH
Q 003258 395 FDL------------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (835)
Q Consensus 395 ~d~------------------------i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~ 449 (835)
+|+ +...+.+...+++.+..+|||+- |.++|++.....++.++|||.+-||...+
T Consensus 170 vd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQR 249 (592)
T KOG0063|consen 170 VDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQR 249 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHh
Confidence 222 23334445667889999999887 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchhHHhhh
Q 003258 450 VALATSILQYLRDRVGLAVVTTHYADLSCLK 480 (835)
Q Consensus 450 ~aL~~all~~l~~~~~~viitTH~~el~~~~ 480 (835)
...+. .+..+..-+..+|++-||+.+..|.
T Consensus 250 LkaA~-~IRsl~~p~~YiIVVEHDLsVLDyl 279 (592)
T KOG0063|consen 250 LKAAI-TIRSLINPDRYIIVVEHDLSVLDYL 279 (592)
T ss_pred hhHHH-HHHHhhCCCCeEEEEEeechHHHhh
Confidence 99888 5666777678999999999865543
No 448
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.53 E-value=1.5e-07 Score=119.46 Aligned_cols=82 Identities=16% Similarity=0.060 Sum_probs=67.5
Q ss_pred cccccCCcccchHHHH-HHHHHHHHcC----------CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 003258 405 HQSLEQNLSTFSGHIS-RIVDILELVS----------RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 405 ~~~~~~~lstfSgg~~-rl~~~~~la~----------~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~ 473 (835)
.....+++.+|||||+ +++++++++. +|++|||||||+|+|+.....+.. ++..+...|.+|+|+||+
T Consensus 941 ~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~-~l~~l~~~g~~i~iisH~ 1019 (1042)
T TIGR00618 941 YTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIG-ILDAIREGSKMIGIISHV 1019 (1042)
T ss_pred CCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCc
Confidence 3456788999999999 7888877763 799999999999999999999999 556677778899999999
Q ss_pred hhHH-hhhccccccc
Q 003258 474 ADLS-CLKDKDTRFE 487 (835)
Q Consensus 474 ~el~-~~~~~~~~~~ 487 (835)
.++. .+++++.++.
T Consensus 1020 ~~~~~~~~~~i~v~~ 1034 (1042)
T TIGR00618 1020 PEFRERIPHRILVKK 1034 (1042)
T ss_pred HHHHHhhCCEEEEEE
Confidence 9855 4677666553
No 449
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.51 E-value=4.9e-07 Score=103.60 Aligned_cols=141 Identities=16% Similarity=0.096 Sum_probs=92.6
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCc-----hHHHHHHH-HcCCcccccC-----
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL-----PWFDLILA-DIGDHQSLEQ----- 410 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i-----~~~d~i~~-~ig~~~~~~~----- 410 (835)
++ +.+.+| ++++|+|+||+||||||++| +|...|..+...+ .-+.+++. .++.. .+.+
T Consensus 151 ~l-~~i~~G-q~i~I~G~sG~GKStLl~~I--------~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~-~l~r~v~vv 219 (438)
T PRK07721 151 SL-LTVGKG-QRVGIFAGSGVGKSTLMGMI--------ARNTSADLNVIALIGERGREVREFIERDLGPE-GLKRSIVVV 219 (438)
T ss_pred ee-eeecCC-cEEEEECCCCCCHHHHHHHH--------hcccCCCeEEEEEEecCCccHHHHHHhhcChh-hhcCeEEEE
Confidence 56 999999 99999999999999999999 4444333321000 00112211 12221 1222
Q ss_pred CcccchHHHH-HHHHH-HH------HcCCCcEEEEe-----------------CC--CCCCCHHhHHHHHHHHHHHHhc-
Q 003258 411 NLSTFSGHIS-RIVDI-LE------LVSRESLVLID-----------------EI--GSGTDPSEGVALATSILQYLRD- 462 (835)
Q Consensus 411 ~lstfSgg~~-rl~~~-~~------la~~~~LlLLD-----------------Ep--~~glDp~~~~aL~~all~~l~~- 462 (835)
..+.-|..++ +...+ ++ -....=||++| || ++|+||.....+.. +++.+..
T Consensus 220 ~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~-ller~~~~ 298 (438)
T PRK07721 220 ATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPK-LLERTGTN 298 (438)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHH-HHHHhcCC
Confidence 2234445555 32222 21 12344588899 75 78999999998988 7777763
Q ss_pred -CCc-----EEEEEecchhHHhhhcccccccCCceeecc
Q 003258 463 -RVG-----LAVVTTHYADLSCLKDKDTRFENAATEFSL 495 (835)
Q Consensus 463 -~~~-----~viitTH~~el~~~~~~~~~~~n~~v~~~~ 495 (835)
.|. ||++.|||++ ..+|++...+.+|++.++.
T Consensus 299 ~~GsIT~~~TVlv~~hdm~-e~i~d~v~~i~dG~Ivls~ 336 (438)
T PRK07721 299 ASGSITAFYTVLVDGDDMN-EPIADTVRGILDGHFVLDR 336 (438)
T ss_pred CCCCeeeEEEEEEECCCCC-chhhhhEEEecCEEEEEec
Confidence 564 8999999987 4889999999999998764
No 450
>PRK10869 recombination and repair protein; Provisional
Probab=98.51 E-value=4.3e-07 Score=107.49 Aligned_cols=114 Identities=15% Similarity=0.214 Sum_probs=82.4
Q ss_pred cchHHHH-HHHHHHHHcC----CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccC
Q 003258 414 TFSGHIS-RIVDILELVS----RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFEN 488 (835)
Q Consensus 414 tfSgg~~-rl~~~~~la~----~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n 488 (835)
.+||||+ |+.+++.++. +|+++|+|||++|+|+.....++. ++..+.+ +.+||++||++.+..+|++++.+..
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~-~l~~l~~-~~qvi~iTH~~~~~~~ad~~~~v~k 507 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGK-LLRQLGE-STQVMCVTHLPQVAGCGHQHFFVSK 507 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhc-CCEEEEEecCHHHHHhCCEEEEEec
Confidence 7899999 8999988775 689999999999999999999999 6666654 6899999999998899999888765
Q ss_pred CceeecccccccchhcccCCCCCchHHHHHHHcC-C--CHHHHHHHHHHH
Q 003258 489 AATEFSLETLRPTYRILWGSTGDSNALNIAKSIG-F--DRKIIQRAQKLV 535 (835)
Q Consensus 489 ~~v~~~~~~l~~~Y~l~~g~~~~s~a~~ia~~~g-~--~~~ii~~A~~~~ 535 (835)
+.. ...+....- -..+...-.+||+++| . .+..+..|++.+
T Consensus 508 ~~~--~~~t~s~i~----~L~~~~R~~EiARMl~G~~~t~~~~~~A~eLl 551 (553)
T PRK10869 508 ETD--GGMTETHMQ----PLDKKARLQELARLLGGSEVTRNTLANAKELL 551 (553)
T ss_pred ccc--CCeeeEEEE----ECChhHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 431 111111111 1123345568999884 2 455566666654
No 451
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.46 E-value=3.2e-07 Score=113.47 Aligned_cols=151 Identities=21% Similarity=0.250 Sum_probs=114.1
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhh----------hhhc---------ccceeecCCCCCCch--------
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA----------SLMS---------KAGLYLPAKNHPRLP-------- 393 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli----------~~ma---------~~G~~vP~~~~~~i~-------- 393 (835)
|++.-+++| +++.+.||.|||||||||.+ |-. .+.+ +.-.|.++.. ..++
T Consensus 133 ~~sg~~~pg-~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~D-vH~p~lTVreTl 210 (1391)
T KOG0065|consen 133 DISGIIKPG-EMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQD-VHFPELTVRETL 210 (1391)
T ss_pred CcceeEcCC-ceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccc-cccceeEEeehh
Confidence 899999999 99999999999999999999 221 1100 0001222221 1111
Q ss_pred ------------------------HHHHHHHHcCCccccc-----CCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCC
Q 003258 394 ------------------------WFDLILADIGDHQSLE-----QNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 443 (835)
Q Consensus 394 ------------------------~~d~i~~~ig~~~~~~-----~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~g 443 (835)
..|.++..+|+..-.+ ....-.|||+| |+..+-.++.+++++.+||+|+|
T Consensus 211 dFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~G 290 (1391)
T KOG0065|consen 211 DFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRG 290 (1391)
T ss_pred hHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccccc
Confidence 2446677888876544 34567899999 89999889999999999999999
Q ss_pred CCHHhHHHHHHHHHHHHhcCCcEEEEEecch--hHHhhhcccccccCCceeec
Q 003258 444 TDPSEGVALATSILQYLRDRVGLAVVTTHYA--DLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 444 lDp~~~~aL~~all~~l~~~~~~viitTH~~--el~~~~~~~~~~~n~~v~~~ 494 (835)
||....-.++.++...-+-.+.|.+++-|.. +.-.+-|.+..+.+|.+.|.
T Consensus 291 LDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~ 343 (1391)
T KOG0065|consen 291 LDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQ 343 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEe
Confidence 9999999999977666666678888888884 46678889999999988876
No 452
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.44 E-value=3.1e-07 Score=109.24 Aligned_cols=88 Identities=23% Similarity=0.263 Sum_probs=69.6
Q ss_pred HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHc----------CCCcEEEEeCCC-CCCCHHhHHHHHHHHHHHHhc
Q 003258 395 FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV----------SRESLVLIDEIG-SGTDPSEGVALATSILQYLRD 462 (835)
Q Consensus 395 ~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la----------~~~~LlLLDEp~-~glDp~~~~aL~~all~~l~~ 462 (835)
++......|.. ...+.+|||||+ |++++++++ .+|+++|||||| +++|+.....+.. ++..+
T Consensus 452 ~~~~~~~~g~~---~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~-~l~~~-- 525 (562)
T PHA02562 452 FNETIKSRGRE---DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLS-ILDSL-- 525 (562)
T ss_pred hhhHHhcCCCC---ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHH-HHHhC--
Confidence 33444445542 347899999999 788887766 589999999998 7899999999998 55555
Q ss_pred CCcEEEEEecchhHHhhhcccccccC
Q 003258 463 RVGLAVVTTHYADLSCLKDKDTRFEN 488 (835)
Q Consensus 463 ~~~~viitTH~~el~~~~~~~~~~~n 488 (835)
.+.++|++||+.++...+++++.+.+
T Consensus 526 ~~~~iiiish~~~~~~~~d~~~~l~~ 551 (562)
T PHA02562 526 KDTNVFVISHKDHDPQKFDRHLKMEK 551 (562)
T ss_pred CCCeEEEEECchhchhhhhcEEEEEE
Confidence 47899999999887788888877764
No 453
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.44 E-value=1.6e-06 Score=91.61 Aligned_cols=125 Identities=16% Similarity=0.184 Sum_probs=74.4
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhh-hcccceeecCCCCCCchHHHHHHHHcCCc--cccc-----------CCc
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDH--QSLE-----------QNL 412 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~-ma~~G~~vP~~~~~~i~~~d~i~~~ig~~--~~~~-----------~~l 412 (835)
+++| .++.|+||+|+|||||..++..-.+ .+..++|+-.+.. .-.+..+ +..+|.. +.+. ...
T Consensus 22 ~~~g-~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~-~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 22 IPFP-SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT-SKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CcCC-cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC-HHHHHHH-HHHCCCChhHHHhCCCceEEecccccc
Confidence 3567 8999999999999999999843221 3455667766642 2222222 2334321 1110 112
Q ss_pred ccchHHHH-HHHHHHHHcC--CCcEEEEeCCCCCCCHHhHH---HHHHHHHHHHhcCCcEEEEEecchh
Q 003258 413 STFSGHIS-RIVDILELVS--RESLVLIDEIGSGTDPSEGV---ALATSILQYLRDRVGLAVVTTHYAD 475 (835)
Q Consensus 413 stfSgg~~-rl~~~~~la~--~~~LlLLDEp~~glDp~~~~---aL~~all~~l~~~~~~viitTH~~e 475 (835)
+..+.++. .+..+...+. +++++++|||++.+|..... .+.. .+..+.+.++|+++++|...
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~-~l~~l~~~g~tvllt~~~~~ 166 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT-EAKNLVDLGKTILITLHPYA 166 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCc
Confidence 23344555 3444544444 89999999999655543333 3333 24445667889999999754
No 454
>PRK01156 chromosome segregation protein; Provisional
Probab=98.39 E-value=9.1e-07 Score=111.02 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=64.8
Q ss_pred cCCcccchHHHH-HHHHH------HHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCC--cEEEEEecchhHHhh
Q 003258 409 EQNLSTFSGHIS-RIVDI------LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV--GLAVVTTHYADLSCL 479 (835)
Q Consensus 409 ~~~lstfSgg~~-rl~~~------~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~--~~viitTH~~el~~~ 479 (835)
..++..||||++ +++++ .+++.+|++++|||||+|||+.....+...+...+...+ .++|++||++++..+
T Consensus 796 ~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~ 875 (895)
T PRK01156 796 VEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSV 875 (895)
T ss_pred cCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHh
Confidence 357889999998 66654 567789999999999999999999999885544455543 489999999998889
Q ss_pred hccccccc
Q 003258 480 KDKDTRFE 487 (835)
Q Consensus 480 ~~~~~~~~ 487 (835)
|++++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99888775
No 455
>PRK03918 chromosome segregation protein; Provisional
Probab=98.38 E-value=5.5e-07 Score=112.71 Aligned_cols=78 Identities=19% Similarity=0.190 Sum_probs=64.1
Q ss_pred cCCcccchHHHH-HHHHH------HHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhc
Q 003258 409 EQNLSTFSGHIS-RIVDI------LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 481 (835)
Q Consensus 409 ~~~lstfSgg~~-rl~~~------~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~ 481 (835)
..++.+|||||+ +++++ ++++.+|+++||||||+|+|+.....+...+.. +...+.++|++||+.++..+|+
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~-~~~~~~~iiiith~~~~~~~~d 861 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMER-YLRKIPQVIIVSHDEELKDAAD 861 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHH-HHhcCCEEEEEECCHHHHHhCC
Confidence 567889999998 45444 346789999999999999999999999995544 5555789999999999888898
Q ss_pred cccccc
Q 003258 482 KDTRFE 487 (835)
Q Consensus 482 ~~~~~~ 487 (835)
+++.+.
T Consensus 862 ~~~~l~ 867 (880)
T PRK03918 862 YVIRVS 867 (880)
T ss_pred eEEEEE
Confidence 887765
No 456
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.35 E-value=5.2e-06 Score=77.75 Aligned_cols=116 Identities=20% Similarity=0.217 Sum_probs=65.2
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhhcc-cceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHc
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLMSK-AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV 429 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~ma~-~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la 429 (835)
..++|+||+|+||||+++.+........ ..+++..+.......+... ...........++.+. +.....+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALARK 76 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------hhhhhccCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999933222111 1222222211111111111 1112222333344444 444444444
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHH-----HHHHHHhcCCcEEEEEecc
Q 003258 430 SRESLVLIDEIGSGTDPSEGVALAT-----SILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~-----all~~l~~~~~~viitTH~ 473 (835)
..+.++++||+..-.+......... .........+..+|+++|.
T Consensus 77 ~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 77 LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 5579999999999999987766543 1233334446788888884
No 457
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.33 E-value=3.6e-07 Score=100.69 Aligned_cols=123 Identities=11% Similarity=0.072 Sum_probs=70.5
Q ss_pred cceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCc--ccc---cC----Ccc
Q 003258 343 IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDH--QSL---EQ----NLS 413 (835)
Q Consensus 343 isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~--~~~---~~----~ls 413 (835)
+++.+..+ ..++|+|||||||||||+++ ++.+.|..+... ++.... +... ..+ .. ..+
T Consensus 137 l~~~v~~~-~~ili~G~tGsGKTTll~al--------~~~~~~~~~iv~---ied~~E-l~~~~~~~~~l~~~~~~~~~~ 203 (308)
T TIGR02788 137 LRLAIASR-KNIIISGGTGSGKTTFLKSL--------VDEIPKDERIIT---IEDTRE-IFLPHPNYVHLFYSKGGQGLA 203 (308)
T ss_pred HHHHhhCC-CEEEEECCCCCCHHHHHHHH--------HccCCccccEEE---EcCccc-cCCCCCCEEEEEecCCCCCcC
Confidence 44566677 89999999999999999999 665444332111 111111 0000 000 00 001
Q ss_pred cchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCC
Q 003258 414 TFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENA 489 (835)
Q Consensus 414 tfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~ 489 (835)
.++ +. -.+..++..+|+++++|||.. ..+.. +++.+...+..++.|+|........++...+..+
T Consensus 204 ~~~--~~-~~l~~~Lr~~pd~ii~gE~r~-------~e~~~-~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~ 268 (308)
T TIGR02788 204 KVT--PK-DLLQSCLRMRPDRIILGELRG-------DEAFD-FIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKS 268 (308)
T ss_pred ccC--HH-HHHHHHhcCCCCeEEEeccCC-------HHHHH-HHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhc
Confidence 111 11 122245678999999999995 22233 5555554344679999998876666666555443
No 458
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.31 E-value=1.4e-06 Score=99.15 Aligned_cols=144 Identities=10% Similarity=0.091 Sum_probs=86.0
Q ss_pred ceeccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhccccee--ecCCCCCCc-hHHHHHHHHcCCccc-ccCCcc
Q 003258 339 FPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLY--LPAKNHPRL-PWFDLILADIGDHQS-LEQNLS 413 (835)
Q Consensus 339 ~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma~~G~~--vP~~~~~~i-~~~d~i~~~ig~~~~-~~~~ls 413 (835)
+.++..+.+.+| +.++|+|+||+|||||++++ +.... ..|.+ +...+ ..+ .++...+..-|+... +-...+
T Consensus 145 raID~ll~I~~G-qri~I~G~sG~GKTtLl~~Ia~~~~~--~~gvI~~iGerg-~ev~e~~~~~l~~~gl~~tvvv~~ts 220 (432)
T PRK06793 145 KSIDSMLTIGIG-QKIGIFAGSGVGKSTLLGMIAKNAKA--DINVISLVGERG-REVKDFIRKELGEEGMRKSVVVVATS 220 (432)
T ss_pred EEEeccceecCC-cEEEEECCCCCChHHHHHHHhccCCC--CeEEEEeCCCCc-ccHHHHHHHHhhhcccceeEEEEECC
Confidence 345667999999 89999999999999999999 22211 11211 11111 111 122223332232221 335567
Q ss_pred cchHHHH-HHHHHHHHc-------CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccc
Q 003258 414 TFSGHIS-RIVDILELV-------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR 485 (835)
Q Consensus 414 tfSgg~~-rl~~~~~la-------~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~ 485 (835)
+-|.+++ +...+.... .++-||++|+||++.|+. ..+.. .+...-..|-+..+.||...+..-+ -.
T Consensus 221 d~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl-~~~e~p~~G~~~~~~s~l~~L~ERa---g~ 294 (432)
T PRK06793 221 DESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDI-AVKELPIGGKTLLMESYMKKLLERS---GK 294 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHH-HhcCCCCCCeeeeeeccchhHHHHh---cc
Confidence 8889998 665553332 678899999999999996 34443 3333443466777778854443333 22
Q ss_pred ccCCcee
Q 003258 486 FENAATE 492 (835)
Q Consensus 486 ~~n~~v~ 492 (835)
...|++.
T Consensus 295 ~~~GSiT 301 (432)
T PRK06793 295 TQKGSIT 301 (432)
T ss_pred CCCcceE
Confidence 3566664
No 459
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.25 E-value=1.7e-06 Score=109.88 Aligned_cols=70 Identities=20% Similarity=0.078 Sum_probs=61.4
Q ss_pred ccCCcccchHHHH-HHHHHHHHcC--------CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh
Q 003258 408 LEQNLSTFSGHIS-RIVDILELVS--------RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC 478 (835)
Q Consensus 408 ~~~~lstfSgg~~-rl~~~~~la~--------~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~ 478 (835)
..+++.+|||||+ +++++++++. +|+++||||||+++|+.....+.. ++..+.+.|.+|+|+||..++..
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~-~l~~l~~~g~~v~iisH~~~l~~ 1021 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALD-ALDALNASGKTIGVISHVEAMKE 1021 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEecHHHHHH
Confidence 4578999999999 7888888874 899999999999999999999998 67778888999999999877654
No 460
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.23 E-value=1.6e-06 Score=90.05 Aligned_cols=49 Identities=18% Similarity=0.055 Sum_probs=38.3
Q ss_pred cccchHH--HH-HHHHHHHHcCCCcEEEEeCCC-----CCCCHHhHHHHHHHHHHHHh
Q 003258 412 LSTFSGH--IS-RIVDILELVSRESLVLIDEIG-----SGTDPSEGVALATSILQYLR 461 (835)
Q Consensus 412 lstfSgg--~~-rl~~~~~la~~~~LlLLDEp~-----~glDp~~~~aL~~all~~l~ 461 (835)
.|..+|+ ++ ...++..++.+|+++++|||| +|+||.....+.+ ++..++
T Consensus 148 ~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~-~~~~~~ 204 (215)
T PTZ00132 148 ISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEK-ELQAAA 204 (215)
T ss_pred EeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHH-HHHHHh
Confidence 3445554 33 467788899999999999999 9999999999998 444443
No 461
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.20 E-value=2e-06 Score=110.57 Aligned_cols=77 Identities=22% Similarity=0.204 Sum_probs=64.5
Q ss_pred ccCCcccchHHHH-HHHHHHHH----cCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcc
Q 003258 408 LEQNLSTFSGHIS-RIVDILEL----VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK 482 (835)
Q Consensus 408 ~~~~lstfSgg~~-rl~~~~~l----a~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~ 482 (835)
.+..+..|||||+ ++++++++ +.+|+|+|||||++|+|+.....+.. ++..+.. +.++||+||++++..+|++
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~-~~~~~~~-~~~~i~~sh~~~~~~~~d~ 1160 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFAN-LLKEFSK-NTQFIVITHNKGTMEVADQ 1160 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHH-HHHHhcc-CCEEEEEEcChhHHHHhhh
Confidence 4578889999999 77777766 47789999999999999999999988 5555654 4789999999988788988
Q ss_pred cccc
Q 003258 483 DTRF 486 (835)
Q Consensus 483 ~~~~ 486 (835)
++.+
T Consensus 1161 ~~~~ 1164 (1179)
T TIGR02168 1161 LYGV 1164 (1179)
T ss_pred Heee
Confidence 8765
No 462
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.19 E-value=1.8e-05 Score=101.88 Aligned_cols=77 Identities=13% Similarity=0.068 Sum_probs=63.4
Q ss_pred cCCcccchHHHH-HHHHHHHHc----CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccc
Q 003258 409 EQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD 483 (835)
Q Consensus 409 ~~~lstfSgg~~-rl~~~~~la----~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~ 483 (835)
.+.+++|||||+ ++++++.++ .+|+++|||||++|+|+.....+.. ++..+.. ++.+|++||+..+..+|+..
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~-~l~~~~~-~~~~i~~t~~~~~~~~~d~~ 1146 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAK-LIREKAG-EAQFIVVSLRSPMIEYADRA 1146 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHH-HHHHhcC-CCeEEEEECcHHHHHhccee
Confidence 356788999999 677776665 5789999999999999999999998 5555554 47899999998877888888
Q ss_pred cccc
Q 003258 484 TRFE 487 (835)
Q Consensus 484 ~~~~ 487 (835)
+.+.
T Consensus 1147 ~~~~ 1150 (1164)
T TIGR02169 1147 IGVT 1150 (1164)
T ss_pred EeEE
Confidence 7654
No 463
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.19 E-value=2e-06 Score=88.75 Aligned_cols=117 Identities=16% Similarity=0.186 Sum_probs=60.2
Q ss_pred EEEEEcCCCCChhhHHhhH-HhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcCC
Q 003258 353 VVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR 431 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i-Gli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~~ 431 (835)
+++|+||+||||||+++.+ +.+... ..+..+-.+.+..+. .......+. ...+.....+|+.. +..++..+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~-~~~~i~t~e~~~E~~-~~~~~~~i~-q~~vg~~~~~~~~~-----i~~aLr~~ 74 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKN-KTHHILTIEDPIEFV-HESKRSLIN-QREVGLDTLSFENA-----LKAALRQD 74 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc-CCcEEEEEcCCcccc-ccCccceee-ecccCCCccCHHHH-----HHHHhcCC
Confidence 7899999999999999987 222110 111111111111110 000000000 00111122334332 23445678
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccc
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR 485 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~ 485 (835)
|+++++|||. |+..... +++ ....|..++.|+|..+.....++...
T Consensus 75 pd~ii~gEir---d~e~~~~----~l~-~a~~G~~v~~t~Ha~~~~~~~~Rl~~ 120 (198)
T cd01131 75 PDVILVGEMR---DLETIRL----ALT-AAETGHLVMSTLHTNSAAKTIDRIID 120 (198)
T ss_pred cCEEEEcCCC---CHHHHHH----HHH-HHHcCCEEEEEecCCcHHHHHhHHHh
Confidence 9999999995 5554332 333 23458899999999875555555443
No 464
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.16 E-value=5.3e-06 Score=107.80 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=60.2
Q ss_pred cccCCcccchHHHHH-------HHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHh----cCCcEEEEEecchh
Q 003258 407 SLEQNLSTFSGHISR-------IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR----DRVGLAVVTTHYAD 475 (835)
Q Consensus 407 ~~~~~lstfSgg~~r-------l~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~----~~~~~viitTH~~e 475 (835)
......+.|||||++ ++++++++.+|.++||||||+|+|+.....|+..+...+. ..|.++|++||+.+
T Consensus 1192 ~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~ 1271 (1311)
T TIGR00606 1192 TALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED 1271 (1311)
T ss_pred eecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH
Confidence 434455799999995 7788899999999999999999999999999986666543 24789999999987
Q ss_pred -HHhhh
Q 003258 476 -LSCLK 480 (835)
Q Consensus 476 -l~~~~ 480 (835)
+..+|
T Consensus 1272 ~~~~~~ 1277 (1311)
T TIGR00606 1272 FVELLG 1277 (1311)
T ss_pred HHHHHh
Confidence 44555
No 465
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.07 E-value=5.7e-06 Score=103.89 Aligned_cols=79 Identities=24% Similarity=0.209 Sum_probs=66.0
Q ss_pred cCCcccchHHHH-HHHHHHHH------cCC--CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhh
Q 003258 409 EQNLSTFSGHIS-RIVDILEL------VSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (835)
Q Consensus 409 ~~~lstfSgg~~-rl~~~~~l------a~~--~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~ 479 (835)
.+++++||||++ .+++++++ ..+ -++++|||||..||+.....++. +++.+...+.+|+|+||+.++...
T Consensus 810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~-~l~~i~~~~~qiiIISH~eel~e~ 888 (908)
T COG0419 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAE-ILEELLSDGRQIIIISHVEELKER 888 (908)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHH-HHHHHHhcCCeEEEEeChHHHHHh
Confidence 578999999999 55555443 234 58999999999999999999999 667777778999999999999999
Q ss_pred hcccccccC
Q 003258 480 KDKDTRFEN 488 (835)
Q Consensus 480 ~~~~~~~~n 488 (835)
++..+.+..
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 988877653
No 466
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.03 E-value=0.00013 Score=88.66 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=33.5
Q ss_pred eEEEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhHH
Q 003258 326 EMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~iG 372 (835)
.|.+.|+...+|.. .++|....+..+++|+||||+||||+|+++-
T Consensus 5 ~l~l~nf~~~~~~~--~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~ 49 (650)
T TIGR03185 5 QLTLENFGPYRGRQ--TFDLSPSSPKPIILIGGLNGAGKTTLLDAIQ 49 (650)
T ss_pred EEEEeceEEEcCCc--eeeeecCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 35677887666543 4455555554599999999999999999993
No 467
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.88 E-value=2.6e-05 Score=83.26 Aligned_cols=73 Identities=11% Similarity=0.100 Sum_probs=53.7
Q ss_pred cchHHH--------H-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHH-HHHHHHHHHhcCCcEEEEEecchhHHhhhccc
Q 003258 414 TFSGHI--------S-RIVDILELVSRESLVLIDEIGSGTDPSEGVA-LATSILQYLRDRVGLAVVTTHYADLSCLKDKD 483 (835)
Q Consensus 414 tfSgg~--------~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~a-L~~all~~l~~~~~~viitTH~~el~~~~~~~ 483 (835)
.+|||+ + ++..++....++++.+| +|+.+|+.+-.. + +++.+...+.+.|+.||........+.+
T Consensus 129 ~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~---i~~~~~~~~~~~ivls~~la~~~~~paI 203 (249)
T cd01128 129 ILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDV---IFEEFKGTGNMELVLDRRLAERRIFPAI 203 (249)
T ss_pred CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccch---HHHHHhcCCCcEEEEchHHhhCCCCCeE
Confidence 346777 4 78878877789999999 999999644322 3 2466665678999999998777777777
Q ss_pred ccccCCce
Q 003258 484 TRFENAAT 491 (835)
Q Consensus 484 ~~~~n~~v 491 (835)
..+..++.
T Consensus 204 ~vl~s~sr 211 (249)
T cd01128 204 DILKSGTR 211 (249)
T ss_pred EEcCCCCc
Confidence 77777665
No 468
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.86 E-value=3.3e-05 Score=81.96 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=35.6
Q ss_pred cCCCcEEEEeCCCC------CCCHHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 003258 429 VSRESLVLIDEIGS------GTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 429 a~~~~LlLLDEp~~------glDp~~~~aL~~all~~l~~~~~~viitTH~~ 474 (835)
..+|.+|++| |.+ ..|+.....+...+.....+.++++|+++|..
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 5799999999 654 47888888888756555556689999999985
No 469
>PRK02224 chromosome segregation protein; Provisional
Probab=97.84 E-value=2.2e-05 Score=98.44 Aligned_cols=77 Identities=19% Similarity=0.108 Sum_probs=59.1
Q ss_pred CCcccchHHHHH-HHH------HHHHcC-----C-CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCc-EEEEEecchh
Q 003258 410 QNLSTFSGHISR-IVD------ILELVS-----R-ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTTHYAD 475 (835)
Q Consensus 410 ~~lstfSgg~~r-l~~------~~~la~-----~-~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~-~viitTH~~e 475 (835)
..+..||||+++ +++ +..++. . ++++|||||++|+|+.....+.. ++..+...|. +||++||+.+
T Consensus 777 ~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~-~l~~~~~~~~~qviiish~~~ 855 (880)
T PRK02224 777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVD-LVESMRRLGVEQIVVVSHDDE 855 (880)
T ss_pred cChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHH-HHHHHHhcCCCeEEEEECChH
Confidence 356899999984 332 223343 2 26799999999999999999998 6666766554 7999999999
Q ss_pred HHhhhccccccc
Q 003258 476 LSCLKDKDTRFE 487 (835)
Q Consensus 476 l~~~~~~~~~~~ 487 (835)
+...|++++.+.
T Consensus 856 ~~~~ad~~~~~~ 867 (880)
T PRK02224 856 LVGAADDLVRVE 867 (880)
T ss_pred HHHhcCeeEEee
Confidence 778898888774
No 470
>COG4637 Predicted ATPase [General function prediction only]
Probab=97.83 E-value=0.00015 Score=78.13 Aligned_cols=65 Identities=25% Similarity=0.218 Sum_probs=49.5
Q ss_pred cchHHHHH-HHHHHHHc--CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhh
Q 003258 414 TFSGHISR-IVDILELV--SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK 480 (835)
Q Consensus 414 tfSgg~~r-l~~~~~la--~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~ 480 (835)
.||-|..| ++++.++. ..|.+++||||-.+|-|.---+|+.-+-+ ..+. .-||++||-..+....
T Consensus 270 eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~s-Aak~-sQv~VsTHS~rLl~~~ 337 (373)
T COG4637 270 ELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRS-AAKR-SQVIVSTHSPRLLNAV 337 (373)
T ss_pred hccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHH-hhcc-ceEEEEeCCHHHHhhc
Confidence 78988665 66665554 36789999999999999999999884444 3443 3899999998866543
No 471
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.82 E-value=6.2e-05 Score=93.33 Aligned_cols=62 Identities=19% Similarity=0.120 Sum_probs=47.6
Q ss_pred cCCCcEEEEeCCCCCC-CHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HH---------hhhcccccccCCce
Q 003258 429 VSRESLVLIDEIGSGT-DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LS---------CLKDKDTRFENAAT 491 (835)
Q Consensus 429 a~~~~LlLLDEp~~gl-Dp~~~~aL~~all~~l~~~~~~viitTH~~e-l~---------~~~~~~~~~~n~~v 491 (835)
..+|.++++|||..++ ||.....+.. ++..+.+.|++++++||+.+ +. ..|+..+.+.|+.+
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~-~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a 722 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIRE-WLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAA 722 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccc
Confidence 5799999999999999 6887777777 66667778999999999976 32 34555555555543
No 472
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.81 E-value=0.00024 Score=85.46 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=24.9
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~ 473 (835)
.+|+||| +..+|+.....|.. +++. ..+.+++++
T Consensus 267 GvL~LDE-i~~Ld~~~Q~~Ll~-~Le~-----~~v~~~~~~ 300 (615)
T TIGR02903 267 GVLFIDE-IGELDPLLQNKLLK-VLED-----KRVEFSSSY 300 (615)
T ss_pred CeEEEec-cccCCHHHHHHHHH-HHhh-----CeEEeecce
Confidence 4999999 68999998888777 3332 456666654
No 473
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.79 E-value=1.6e-05 Score=81.60 Aligned_cols=92 Identities=17% Similarity=0.226 Sum_probs=57.2
Q ss_pred EEEEEcCCCCChhhHHhhH-Hhh-----hhhcccceeecCCC---------------CCCchHHHHHHHHcCCcccccCC
Q 003258 353 VVVITGPNTGGKTASMKTL-GLA-----SLMSKAGLYLPAKN---------------HPRLPWFDLILADIGDHQSLEQN 411 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i-Gli-----~~ma~~G~~vP~~~---------------~~~i~~~d~i~~~ig~~~~~~~~ 411 (835)
+++|+||+|||||||.++| +++ .++..-.++.+... ...+..+.+.+..+...+.+..+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 4799999999999999999 443 11111111111100 00111233455556666667777
Q ss_pred cccchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCH
Q 003258 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDP 446 (835)
Q Consensus 412 lstfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp 446 (835)
...+|.|++....+ ...++.++|+|.|+.+.++
T Consensus 81 ~~d~~~~~~~~~~~--~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 81 VYDFKTHSRLKETV--TVYPADVIILEGILALYDK 113 (198)
T ss_pred ccccccCcccCCce--ecCCCCEEEEechhhccch
Confidence 77888887632111 4578899999999999987
No 474
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.79 E-value=0.00013 Score=69.02 Aligned_cols=106 Identities=22% Similarity=0.252 Sum_probs=57.8
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhh-hcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcC
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVS 430 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~-ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~ 430 (835)
..+.|+||.|+||||+++.+.-... ....-.++....... .. ......+.. ............
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~-~~--~~~~~~~~~-------------~~~~~~~~~~~~ 83 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE-GL--VVAELFGHF-------------LVRLLFELAEKA 83 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh-hh--HHHHHhhhh-------------hHhHHHHhhccC
Confidence 6899999999999999999932211 000111111111000 00 000000000 122333444567
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-----CCcEEEEEecchh
Q 003258 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRD-----RVGLAVVTTHYAD 475 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-----~~~~viitTH~~e 475 (835)
++.++++||.-.. ++.....+.. ++..+.. .+.++|++|+...
T Consensus 84 ~~~~lilDe~~~~-~~~~~~~~~~-~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 84 KPGVLFIDEIDSL-SRGAQNALLR-VLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CCeEEEEeChhhh-hHHHHHHHHH-HHHhcCceeccCCCeEEEEecCccc
Confidence 8899999998776 5555566666 4444432 4678889988754
No 475
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=97.75 E-value=9.2e-05 Score=88.14 Aligned_cols=89 Identities=26% Similarity=0.258 Sum_probs=74.7
Q ss_pred HHHcCCcc-cccCCcccchHHHH-HHHHHHHHcCC--CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 003258 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 399 ~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~~--~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~ 474 (835)
+.++|+.- .+++...|||||+. |+.+|..+-.+ .=|++||||..||-+.+-..|.. .+..|++.|-|+|+|.||.
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~-tL~~LRDlGNTviVVEHDe 543 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIE-TLKRLRDLGNTVIVVEHDE 543 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHH-HHHHHHhcCCeEEEEecCH
Confidence 45666653 57899999999998 78888665432 35899999999999999999999 7788999999999999999
Q ss_pred hHHhhhcccccccC
Q 003258 475 DLSCLKDKDTRFEN 488 (835)
Q Consensus 475 el~~~~~~~~~~~n 488 (835)
+.-..||+++-+..
T Consensus 544 dti~~AD~iIDiGP 557 (935)
T COG0178 544 DTIRAADHIIDIGP 557 (935)
T ss_pred HHHhhcCEEEeeCC
Confidence 98889998876644
No 476
>PRK09183 transposase/IS protein; Provisional
Probab=97.74 E-value=5e-05 Score=81.75 Aligned_cols=107 Identities=23% Similarity=0.327 Sum_probs=63.3
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccc---eeecCCCCCCchHHHHHHHHcCCcccccCCcccchHH
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAG---LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH 418 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G---~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg 418 (835)
.+++ +..| +.++|+||+|+|||+|+.++|..... .| .|++. ..++..+..... . +
T Consensus 95 ~~~~-i~~~-~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~~~~~---------~~l~~~l~~a~~-~-------~- 152 (259)
T PRK09183 95 SLSF-IERN-ENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVRFTTA---------ADLLLQLSTAQR-Q-------G- 152 (259)
T ss_pred cCCc-hhcC-CeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeH---------HHHHHHHHHHHH-C-------C-
Confidence 4555 7778 88999999999999999999655332 23 22221 112211110000 0 0
Q ss_pred HHHHHHH-HHHcCCCcEEEEeCCCCC-CCHHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 003258 419 ISRIVDI-LELVSRESLVLIDEIGSG-TDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 419 ~~rl~~~-~~la~~~~LlLLDEp~~g-lDp~~~~aL~~all~~l~~~~~~viitTH~~ 474 (835)
++... ......++++++||.+.. .+......|.. ++....+++ .+|+||+..
T Consensus 153 --~~~~~~~~~~~~~dlLiiDdlg~~~~~~~~~~~lf~-li~~r~~~~-s~iiTsn~~ 206 (259)
T PRK09183 153 --RYKTTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQ-VIAKRYEKG-SMILTSNLP 206 (259)
T ss_pred --cHHHHHHHHhcCCCEEEEcccccCCCChHHHHHHHH-HHHHHHhcC-cEEEecCCC
Confidence 11111 122468899999999864 56655556666 665555544 578888874
No 477
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.71 E-value=5e-05 Score=85.05 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCChhhHHhhH-HhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcC
Q 003258 352 RVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVS 430 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i-Gli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~ 430 (835)
..++|+||+||||||+|+.+ +.+.- ...+..+-.+....+. +......+. ...+....-+|.. .+..++-.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~-~~~~~i~tiEdp~E~~-~~~~~~~i~-q~evg~~~~~~~~-----~l~~~lr~ 194 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINK-NAAGHIITIEDPIEYV-HRNKRSLIN-QREVGLDTLSFAN-----ALRAALRE 194 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCc-CCCCEEEEEcCChhhh-ccCccceEE-ccccCCCCcCHHH-----HHHHhhcc
Confidence 68999999999999999997 21110 0111111111111110 000000000 0001111112211 12234568
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccc
Q 003258 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD 483 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~ 483 (835)
+|+++++||+. |+........ ....|..++.|+|-.......++.
T Consensus 195 ~pd~i~vgEir---d~~~~~~~l~-----aa~tGh~v~~T~Ha~~~~~~~~Rl 239 (343)
T TIGR01420 195 DPDVILIGEMR---DLETVELALT-----AAETGHLVFGTLHTNSAAQTIERI 239 (343)
T ss_pred CCCEEEEeCCC---CHHHHHHHHH-----HHHcCCcEEEEEcCCCHHHHHHHH
Confidence 99999999996 7766544333 234488899999986644433333
No 478
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.71 E-value=2.3e-05 Score=79.96 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=24.9
Q ss_pred cceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 343 IDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 343 isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+.+.+..| ..++|+||||||||||++++
T Consensus 18 l~~~v~~g-~~i~I~G~tGSGKTTll~aL 45 (186)
T cd01130 18 LWLAVEAR-KNILISGGTGSGKTTLLNAL 45 (186)
T ss_pred HHHHHhCC-CEEEEECCCCCCHHHHHHHH
Confidence 45567778 89999999999999999999
No 479
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.69 E-value=0.00019 Score=83.23 Aligned_cols=93 Identities=20% Similarity=0.247 Sum_probs=54.0
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhc---ccceeecCCCCCCchHHHHHH---HHcCCcccccCCcccc
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMS---KAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTF 415 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma---~~G~~vP~~~~~~i~~~d~i~---~~ig~~~~~~~~lstf 415 (835)
+.++.++.| .+++++||||+||||++..|+-...+. ....+++++. .+++.++++- ..+|..-......
T Consensus 248 ~~~~~~~~g-~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt-~RigA~EQLr~~AeilGVpv~~~~~~--- 322 (484)
T PRK06995 248 SEDALLDRG-GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS-YRIGGHEQLRIYGKILGVPVHAVKDA--- 322 (484)
T ss_pred CccccccCC-cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc-cchhHHHHHHHHHHHhCCCeeccCCc---
Confidence 344556677 899999999999999999994332221 1223667765 5677666553 2233211100000
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCCCC
Q 003258 416 SGHISRIVDILELVSRESLVLIDEIGSG 443 (835)
Q Consensus 416 Sgg~~rl~~~~~la~~~~LlLLDEp~~g 443 (835)
..+...+.-+.+..++|+|.+|.+
T Consensus 323 ----~Dl~~aL~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 323 ----ADLRLALSELRNKHIVLIDTIGMS 346 (484)
T ss_pred ----hhHHHHHHhccCCCeEEeCCCCcC
Confidence 122233344556688899987644
No 480
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.00046 Score=78.87 Aligned_cols=90 Identities=19% Similarity=0.254 Sum_probs=54.9
Q ss_pred cCCceEEEEEcCCCCChhhHHhhHHhhhhh---cccceeecCCCCCCchHHHHHHH---HcCCcccccCCcccchHHHHH
Q 003258 348 ECETRVVVITGPNTGGKTASMKTLGLASLM---SKAGLYLPAKNHPRLPWFDLILA---DIGDHQSLEQNLSTFSGHISR 421 (835)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLK~iGli~~m---a~~G~~vP~~~~~~i~~~d~i~~---~ig~~~~~~~~lstfSgg~~r 421 (835)
..| .+++++||||+||||+++.|+-..++ ...+.++.++. .+++.++++.. .+|..-..-.. .. .
T Consensus 189 ~~g-~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~-~rigalEQL~~~a~ilGvp~~~v~~------~~-d 259 (420)
T PRK14721 189 EQG-GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDS-YRIGGHEQLRIYGKLLGVSVRSIKD------IA-D 259 (420)
T ss_pred CCC-cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCC-cchhHHHHHHHHHHHcCCceecCCC------HH-H
Confidence 466 89999999999999999988433222 12344566664 67888776532 23332111111 11 2
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHh
Q 003258 422 IVDILELVSRESLVLIDEIGSGTDPSE 448 (835)
Q Consensus 422 l~~~~~la~~~~LlLLDEp~~glDp~~ 448 (835)
+..++..+.+.+++|+|.+ |..+..
T Consensus 260 l~~al~~l~~~d~VLIDTa--Grsqrd 284 (420)
T PRK14721 260 LQLMLHELRGKHMVLIDTV--GMSQRD 284 (420)
T ss_pred HHHHHHHhcCCCEEEecCC--CCCcch
Confidence 3344455678899999976 555543
No 481
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.68 E-value=0.00039 Score=73.03 Aligned_cols=125 Identities=17% Similarity=0.173 Sum_probs=68.7
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhh-hcccceeecCCCCCCchHHHHHHHHcCCc-------------ccc----
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDH-------------QSL---- 408 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~-ma~~G~~vP~~~~~~i~~~d~i~~~ig~~-------------~~~---- 408 (835)
+++| ++++|.||+|+|||||...+..-.+ -...++|+..+... ..+-+....+|.. +.+
T Consensus 17 i~~G-~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~--~~i~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~ 93 (229)
T TIGR03881 17 IPRG-FFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESR--ESIIRQAAQFGMDFEKAIEEGKLVIIDALMKEK 93 (229)
T ss_pred CcCC-eEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCH--HHHHHHHHHhCCCHHHHhhcCCEEEEEcccccc
Confidence 4678 9999999999999999988732111 13344555443311 1111112222211 000
Q ss_pred --cCCcccchHHHH--HHHHHHHHc-CCCcEEEEeCCCCCC--CHHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 003258 409 --EQNLSTFSGHIS--RIVDILELV-SRESLVLIDEIGSGT--DPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 409 --~~~lstfSgg~~--rl~~~~~la-~~~~LlLLDEp~~gl--Dp~~~~aL~~all~~l~~~~~~viitTH~~ 474 (835)
...+..++-.+. ++..+.... .++.++++|-|+.-+ +|.....+...+...+.+.++|+|+++|..
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~ 166 (229)
T TIGR03881 94 EDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYA 166 (229)
T ss_pred ccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 011122343332 333333322 257788899887643 444334455557777788899999999964
No 482
>PRK00064 recF recombination protein F; Reviewed
Probab=97.65 E-value=6.9e-05 Score=84.49 Aligned_cols=79 Identities=19% Similarity=0.133 Sum_probs=56.8
Q ss_pred cCCcccchHHHH-HHHHHHHHc---------CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HH
Q 003258 409 EQNLSTFSGHIS-RIVDILELV---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LS 477 (835)
Q Consensus 409 ~~~lstfSgg~~-rl~~~~~la---------~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~ 477 (835)
......+|.||+ ++.+++.++ .+|+++|||||+++||+.....|...+.+ .++.+++|||+.+ +.
T Consensus 268 ~~~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~----~~~qv~it~~~~~~~~ 343 (361)
T PRK00064 268 LPAADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKG----LGAQVFITTTDLEDLA 343 (361)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhc----cCCEEEEEcCChhhhh
Confidence 455678999999 577777664 78999999999999999999888773332 2468899999865 33
Q ss_pred hhh--cccccccCCce
Q 003258 478 CLK--DKDTRFENAAT 491 (835)
Q Consensus 478 ~~~--~~~~~~~n~~v 491 (835)
.++ .+.+.+.+|.+
T Consensus 344 ~~~~~~~i~~v~~G~i 359 (361)
T PRK00064 344 DLLENAKIFHVEQGKI 359 (361)
T ss_pred hhhccCcEEEEeCCEE
Confidence 333 23445555543
No 483
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.61 E-value=0.0018 Score=73.12 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=38.1
Q ss_pred CeEEEeeeeeecCCc--ee------------ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 325 SEMTVGSLSKGISDF--PV------------PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~--~v------------~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+.+.++||++.|++. .+ ++.+.+.+| +.++|+||.|+||||+++.|
T Consensus 129 ~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~G-q~~~IvG~~g~GKTtL~~~i 188 (415)
T TIGR00767 129 NRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKG-QRGLIVAPPKAGKTVLLQKI 188 (415)
T ss_pred CCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCC-CEEEEECCCCCChhHHHHHH
Confidence 456788888888542 12 677888999 99999999999999999998
No 484
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.59 E-value=5.7e-05 Score=70.05 Aligned_cols=29 Identities=31% Similarity=0.231 Sum_probs=27.8
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+++|.+.+| ++++|+||+|||||||++++
T Consensus 7 ~vsl~i~~g-e~v~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 7 GVLVDVYGK-VGVLITGDSGIGKTELALEL 35 (107)
T ss_pred eeEEEEcCC-EEEEEEcCCCCCHHHHHHHh
Confidence 789999999 99999999999999999998
No 485
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=97.51 E-value=0.0013 Score=58.73 Aligned_cols=88 Identities=20% Similarity=0.247 Sum_probs=66.2
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeecc-CcEEEEEecccccCCCCcEEEEEccCCcEEEec
Q 003258 130 RASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRR-SRMCVGIKASHKYLLPDGIALNVSSSGATYFME 208 (835)
Q Consensus 130 ~aS~~L~~lR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~r~-~r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~ie 208 (835)
+++++|+.+|+.+..+...++.++.+... ..++....+.... .+|+|.|+......+|..|+.-.+..+...|.+
T Consensus 1 g~d~~Ld~~~~~~~~~~~~l~~~~~~~~~----~~~~~~lk~~~~~~~gy~i~v~~~~~~~~p~~~~~~~~~k~~~rf~t 76 (92)
T PF05190_consen 1 GFDEELDELREEYEEIEEELEELLEEIRK----KLGIPSLKLVYIPKRGYLIEVPKSDEKKLPKDFIIVSSTKSGVRFTT 76 (92)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHH----HCT-TTBEEEEETTTEEEEEEETCCGGGSTTTEEEEEEESSEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCCcEEEEEcCceEEEEEEEccccccCCCceEEEEEEcCcEEEEC
Confidence 57999999999999998888888877653 3444344344434 489999999888888889999888777777777
Q ss_pred cchhhhhhHHHHHH
Q 003258 209 PKGAVEFNNMEVRL 222 (835)
Q Consensus 209 p~~~v~lnn~~~~l 222 (835)
| ++..|+.++.++
T Consensus 77 ~-~l~~L~~~~~~~ 89 (92)
T PF05190_consen 77 P-ELKELNEELKEA 89 (92)
T ss_dssp H-HHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHH
Confidence 7 477777776554
No 486
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.51 E-value=0.00061 Score=78.49 Aligned_cols=145 Identities=17% Similarity=0.081 Sum_probs=85.1
Q ss_pred eeccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC-----CCchHHHHHH-HHcCCc---cc-cc
Q 003258 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-----PRLPWFDLIL-ADIGDH---QS-LE 409 (835)
Q Consensus 340 ~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~-----~~i~~~d~i~-~~ig~~---~~-~~ 409 (835)
.++.-+.+.+| +.++|+|+||+||||||++| ++...|..+. ..-.-+..+. ..++-+ .. +-
T Consensus 153 ~iD~l~~i~~G-q~~~I~G~sG~GKStLl~~I--------~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv 223 (440)
T TIGR01026 153 SIDGLLTVGKG-QRIGIFAGSGVGKSTLLGMI--------ARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVV 223 (440)
T ss_pred eeeeccccCCC-cEEEEECCCCCCHHHHHHHH--------hCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEE
Confidence 44444899999 89999999999999999999 3322221110 0000011111 122211 10 11
Q ss_pred CCcccchHHHH-HHHHH-HH------HcCCCcEEEEe-----------------CC--CCCCCHHhHHHHHHHHHHHHhc
Q 003258 410 QNLSTFSGHIS-RIVDI-LE------LVSRESLVLID-----------------EI--GSGTDPSEGVALATSILQYLRD 462 (835)
Q Consensus 410 ~~lstfSgg~~-rl~~~-~~------la~~~~LlLLD-----------------Ep--~~glDp~~~~aL~~all~~l~~ 462 (835)
-..+.=|-.++ +...+ ++ -....-||++| || ..|.||.....+.. +++....
T Consensus 224 ~~~~d~~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~-l~ERag~ 302 (440)
T TIGR01026 224 VATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPR-LLERAGA 302 (440)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHH-HHHHhcc
Confidence 11222233444 22111 11 12344467777 53 45899998888888 7777766
Q ss_pred CCc-------EEEEEecchhHHhhhcccccccCCceeecc
Q 003258 463 RVG-------LAVVTTHYADLSCLKDKDTRFENAATEFSL 495 (835)
Q Consensus 463 ~~~-------~viitTH~~el~~~~~~~~~~~n~~v~~~~ 495 (835)
.+. ||++.+||+ ...+++....+.+|++.++.
T Consensus 303 ~~~GSIT~i~tVl~~~~d~-~dpi~d~~~~i~dG~ivLsr 341 (440)
T TIGR01026 303 SGKGSITAFYTVLVEGDDM-NEPIADSVRGILDGHIVLSR 341 (440)
T ss_pred CCCCeeeEEEEEEccCcCC-CcchhhhhccccceEEEEec
Confidence 555 788899987 34578888889999988764
No 487
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.49 E-value=0.00042 Score=72.88 Aligned_cols=127 Identities=18% Similarity=0.225 Sum_probs=66.8
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhhhc-------ccceeecCCCCCCchHHHHHHHHcCCc-ccccCCc---ccc
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-------KAGLYLPAKNHPRLPWFDLILADIGDH-QSLEQNL---STF 415 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma-------~~G~~vP~~~~~~i~~~d~i~~~ig~~-~~~~~~l---stf 415 (835)
+..| +++.|+||+|+|||||+..+.....+. ...+|+-.++.....-+.+++..++.. +.....+ ..+
T Consensus 16 i~~g-~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 16 IETG-SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 3567 999999999999999999995443332 233455544422223344444444322 1111111 111
Q ss_pred hHHH-----HHHHHHHHHcCCCcEEEEeCCCCCC-----CH---HhHHH----HHHHHHHHHhcCCcEEEEEecch
Q 003258 416 SGHI-----SRIVDILELVSRESLVLIDEIGSGT-----DP---SEGVA----LATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 416 Sgg~-----~rl~~~~~la~~~~LlLLDEp~~gl-----Dp---~~~~a----L~~all~~l~~~~~~viitTH~~ 474 (835)
+..+ ..+...+....++.+|++|=.++-. +. ..+.. ++..+.....+.+++||+|+|-.
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~ 170 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVT 170 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEe
Confidence 2111 1222222222378899999998631 11 23323 23323333346788999988864
No 488
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.48 E-value=6.6e-05 Score=87.91 Aligned_cols=124 Identities=16% Similarity=0.156 Sum_probs=69.0
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhh-h-cccceeecCCCCCCchHHHHHHHHcCCcc--c--------ccC----
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASL-M-SKAGLYLPAKNHPRLPWFDLILADIGDHQ--S--------LEQ---- 410 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~-m-a~~G~~vP~~~~~~i~~~d~i~~~ig~~~--~--------~~~---- 410 (835)
+++| ..++|+||+|+|||||..++..--+ . ...++|+-.+.. .-. +-+-+..+|..- . ++.
T Consensus 18 lp~g-~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~-~~~-l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~ 94 (484)
T TIGR02655 18 LPIG-RSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES-PQD-IIKNARSFGWDLQKLVDEGKLFILDASPDP 94 (484)
T ss_pred CCCC-eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-HHH-HHHHHHHcCCCHHHHhhcCceEEEecCchh
Confidence 4577 8999999999999999998822211 1 356677765541 111 222233333210 0 000
Q ss_pred ----Ccccch--HHHHHHHHHHHHcCCCcEEEEe---CCCCCCCH--HhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003258 411 ----NLSTFS--GHISRIVDILELVSRESLVLID---EIGSGTDP--SEGVALATSILQYLRDRVGLAVVTTHYAD 475 (835)
Q Consensus 411 ----~lstfS--gg~~rl~~~~~la~~~~LlLLD---Ep~~glDp--~~~~aL~~all~~l~~~~~~viitTH~~e 475 (835)
.+..+. .-..++...+. -.++..|++| .+....|. ..+..+.. ++..+.+.|+|+|+|||+.+
T Consensus 95 ~~~~~~~~~~l~~~l~~i~~~ls-~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~-Li~~L~~~g~TvLLtsh~~~ 168 (484)
T TIGR02655 95 EGQDVVGGFDLSALIERINYAIR-KYKAKRVSIDSVTAVFQQYDAVSVVRREIFR-LVARLKQIGVTTVMTTERIE 168 (484)
T ss_pred ccccccccCCHHHHHHHHHHHHH-HhCCcEEEEeehhHhhhhcCchHHHHHHHHH-HHHHHHHCCCEEEEEecCcc
Confidence 011121 11112222221 2467788888 44444444 33455555 77888888999999999864
No 489
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.45 E-value=0.00015 Score=81.91 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=49.2
Q ss_pred ccchHHHH-HHHHHHHHcC---------CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003258 413 STFSGHIS-RIVDILELVS---------RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (835)
Q Consensus 413 stfSgg~~-rl~~~~~la~---------~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e 475 (835)
..+|.||+ .+.+++.++. .|+++|||||+++||+..+..|...+... |..+++|||+.+
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChh
Confidence 46799999 5777788887 89999999999999999998888844332 679999999865
No 490
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.44 E-value=0.00011 Score=61.25 Aligned_cols=29 Identities=31% Similarity=0.529 Sum_probs=23.1
Q ss_pred cceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 343 IDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 343 isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
-++.+.....+++|+||||+||||+|..+
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi 43 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKSTLLDAI 43 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHHHHHHH
Confidence 34555542158999999999999999999
No 491
>PRK04296 thymidine kinase; Provisional
Probab=97.44 E-value=0.00056 Score=70.12 Aligned_cols=127 Identities=19% Similarity=0.147 Sum_probs=67.4
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhh-cc-cceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHc
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLM-SK-AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELV 429 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~m-a~-~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la 429 (835)
.+.+|+||.|+||||++-.+..-... .+ .-++.|.-. .+.+ ...+...+|..-.. ............+.. ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d-~~~~-~~~i~~~lg~~~~~-~~~~~~~~~~~~~~~---~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAID-DRYG-EGKVVSRIGLSREA-IPVSSDTDIFELIEE---EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccc-cccc-CCcEecCCCCcccc-eEeCChHHHHHHHHh---hC
Confidence 68899999999999988766221111 11 122333211 1111 22344455532110 001111111111211 34
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecch-----------hHHhhhcccccccCC
Q 003258 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-----------DLSCLKDKDTRFENA 489 (835)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~-----------el~~~~~~~~~~~n~ 489 (835)
.+.++|++||... ++.. .+.. +++.+...|.+||++.++. .+..+||.+..+..-
T Consensus 77 ~~~dvviIDEaq~-l~~~---~v~~-l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~v 142 (190)
T PRK04296 77 EKIDCVLIDEAQF-LDKE---QVVQ-LAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKAI 142 (190)
T ss_pred CCCCEEEEEcccc-CCHH---HHHH-HHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeEE
Confidence 5678999999943 4332 2333 6667777899999999992 355677776665443
No 492
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.00083 Score=75.66 Aligned_cols=103 Identities=21% Similarity=0.233 Sum_probs=61.7
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhh--c-ccceeecCCCCCCchHHHHHH---HHcCCcccccCCcccc
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLM--S-KAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTF 415 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~m--a-~~G~~vP~~~~~~i~~~d~i~---~~ig~~~~~~~~lstf 415 (835)
..++.+..| .+++|+||||+||||++..|+-...+ . ....++..+. .+++.++++- ..+|..-..-+...+|
T Consensus 129 ~~~~~~~~g-~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~-~R~ga~EqL~~~a~~~gv~~~~~~~~~~l 206 (374)
T PRK14722 129 SEDALMERG-GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDS-YRIGGHEQLRIFGKILGVPVHAVKDGGDL 206 (374)
T ss_pred CCCccccCC-cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccc-ccccHHHHHHHHHHHcCCceEecCCcccH
Confidence 455677888 89999999999999999999543222 1 1223555554 4566666542 2344322222222233
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCCCC-CCHHhHHHHH
Q 003258 416 SGHISRIVDILELVSRESLVLIDEIGSG-TDPSEGVALA 453 (835)
Q Consensus 416 Sgg~~rl~~~~~la~~~~LlLLDEp~~g-lDp~~~~aL~ 453 (835)
..++....+.++||+|.||.. .|......+.
T Consensus 207 -------~~~l~~l~~~DlVLIDTaG~~~~d~~l~e~La 238 (374)
T PRK14722 207 -------QLALAELRNKHMVLIDTIGMSQRDRTVSDQIA 238 (374)
T ss_pred -------HHHHHHhcCCCEEEEcCCCCCcccHHHHHHHH
Confidence 223444567899999999765 4554444443
No 493
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.42 E-value=0.0009 Score=77.69 Aligned_cols=135 Identities=16% Similarity=0.140 Sum_probs=73.8
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHh-hhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHH
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGL-ASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI 425 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGl-i~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~ 425 (835)
+.+| .+++|.|++|+|||||+.++.. +.-.....+|+-.+.. ...+..-..++|....--.-+...+ ...+...
T Consensus 91 i~~G-svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs--~~qi~~ra~rlg~~~~~l~~~~e~~--~~~I~~~ 165 (454)
T TIGR00416 91 IVPG-SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES--LQQIKMRAIRLGLPEPNLYVLSETN--WEQICAN 165 (454)
T ss_pred ccCC-eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC--HHHHHHHHHHcCCChHHeEEcCCCC--HHHHHHH
Confidence 4567 8999999999999999999832 2222223455544431 1112222344554311000111111 1122222
Q ss_pred HHHcCCCcEEEEeCCCCCCC---------HHhHHHHHHHHHHHHhcCCcEEEEEecchh---------HHhhhccccccc
Q 003258 426 LELVSRESLVLIDEIGSGTD---------PSEGVALATSILQYLRDRVGLAVVTTHYAD---------LSCLKDKDTRFE 487 (835)
Q Consensus 426 ~~la~~~~LlLLDEp~~glD---------p~~~~aL~~all~~l~~~~~~viitTH~~e---------l~~~~~~~~~~~ 487 (835)
+ ...+|++|++|-...-.. +.....+...+.++.++.|.|+|+++|... +..++|.++.++
T Consensus 166 i-~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le 244 (454)
T TIGR00416 166 I-EEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFE 244 (454)
T ss_pred H-HhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEe
Confidence 1 235799999998865321 222334444477777788999999999643 334555555544
No 494
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.41 E-value=0.0032 Score=78.64 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC-CCchHH--HHHHHHcCCcccccCCcccchHHHHHHHHHH--
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-PRLPWF--DLILADIGDHQSLEQNLSTFSGHISRIVDIL-- 426 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~-~~i~~~--d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~-- 426 (835)
...+|+||.|+||||+.+.++.-... | .+|..-. ..+-.+ ..+++ | .+....|. .++..++
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i~~---~-~vp~~l~~~~~~~l~l~~l~a--g-----~~~~g~~e---~~lk~~~~~ 265 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRIIN---G-EVPEGLKGRRVLALDMGALVA--G-----AKYRGEFE---ERLKGVLND 265 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHhhc---C-CCchhhCCCEEEEEehhhhhh--c-----cchhhhhH---HHHHHHHHH
Confidence 45789999999999999988543321 2 3443210 111000 11110 0 11122222 2343332
Q ss_pred -HHcCCCcEEEEeCCCCCCCH---HhHHHHHHHHHHHHhcCCcEEEEEecchhHHh
Q 003258 427 -ELVSRESLVLIDEIGSGTDP---SEGVALATSILQYLRDRVGLAVVTTHYADLSC 478 (835)
Q Consensus 427 -~la~~~~LlLLDEp~~glDp---~~~~aL~~all~~l~~~~~~viitTH~~el~~ 478 (835)
.....+.+|++||.-+-... ..+...+..+.-++......+|.+|...+...
T Consensus 266 ~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~ 321 (857)
T PRK10865 266 LAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQ 321 (857)
T ss_pred HHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHH
Confidence 22356789999997322110 11122344344445444457777777766533
No 495
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.40 E-value=0.0053 Score=66.48 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=55.6
Q ss_pred CCceEEEEEcCCCCChhhHHhhHHhh-hhhcccceeecCCCCCCchHHHHHHHH---cCCcccccCCcccchHHHHHHHH
Q 003258 349 CETRVVVITGPNTGGKTASMKTLGLA-SLMSKAGLYLPAKNHPRLPWFDLILAD---IGDHQSLEQNLSTFSGHISRIVD 424 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~iGli-~~ma~~G~~vP~~~~~~i~~~d~i~~~---ig~~~~~~~~lstfSgg~~rl~~ 424 (835)
++ .+++++||||+||||+++.++.. .-......++-+++ .+++.+.++-.. ++..-... .+. ..+..
T Consensus 74 ~~-~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~-~ri~~~~ql~~~~~~~~~~~~~~-----~~~--~~l~~ 144 (270)
T PRK06731 74 EV-QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH-SRIGTVQQLQDYVKTIGFEVIAV-----RDE--AAMTR 144 (270)
T ss_pred CC-CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHHhhhcCceEEec-----CCH--HHHHH
Confidence 55 89999999999999999998432 22222334455554 456666665432 22211111 111 12222
Q ss_pred HH---HHcCCCcEEEEeCCCCC-CCHHhHHHHHH
Q 003258 425 IL---ELVSRESLVLIDEIGSG-TDPSEGVALAT 454 (835)
Q Consensus 425 ~~---~la~~~~LlLLDEp~~g-lDp~~~~aL~~ 454 (835)
++ ....+.+++|+|-||.. .|...-..+..
T Consensus 145 ~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~ 178 (270)
T PRK06731 145 ALTYFKEEARVDYILIDTAGKNYRASETVEEMIE 178 (270)
T ss_pred HHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHH
Confidence 22 22346799999999986 45555555554
No 496
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.40 E-value=0.0012 Score=85.24 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=23.8
Q ss_pred cceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 343 IDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 343 isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+++..+.+ ++++|+||+|.|||||++.+
T Consensus 200 L~l~~~~~-~vvgI~G~gGiGKTTLA~~l 227 (1153)
T PLN03210 200 LHLESEEV-RMVGIWGSSGIGKTTIARAL 227 (1153)
T ss_pred HccccCce-EEEEEEcCCCCchHHHHHHH
Confidence 34455566 89999999999999999999
No 497
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.40 E-value=0.0012 Score=74.63 Aligned_cols=121 Identities=17% Similarity=0.190 Sum_probs=67.6
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhh-hcccceeecCCCCCCchHHHHHHHHcCCcc-cccCCcccchHHHHHHHH
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHISRIVD 424 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~-ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~-~~~~~lstfSgg~~rl~~ 424 (835)
+.+| .++.|.|++|+|||||+.++..... -....+|+..+. ....+..-..++|... .+. ..+... ...+..
T Consensus 79 i~~G-slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE--s~~qi~~Ra~rlg~~~~~l~-l~~e~~--le~I~~ 152 (372)
T cd01121 79 LVPG-SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE--SPEQIKLRADRLGISTENLY-LLAETN--LEDILA 152 (372)
T ss_pred ccCC-eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc--CHHHHHHHHHHcCCCcccEE-EEccCc--HHHHHH
Confidence 4567 8999999999999999999832211 112345554443 1222222244566432 111 011111 112222
Q ss_pred HHHHcCCCcEEEEeCCCCC----CC-----HHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 003258 425 ILELVSRESLVLIDEIGSG----TD-----PSEGVALATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 425 ~~~la~~~~LlLLDEp~~g----lD-----p~~~~aL~~all~~l~~~~~~viitTH~~ 474 (835)
.. ...+|++|++|+...- +| ...-..++..+.+..++.+.++|++.|-.
T Consensus 153 ~i-~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvt 210 (372)
T cd01121 153 SI-EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVT 210 (372)
T ss_pred HH-HhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 11 2358999999997432 22 12223344557777778899999999853
No 498
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.38 E-value=0.00075 Score=72.36 Aligned_cols=127 Identities=13% Similarity=0.204 Sum_probs=60.4
Q ss_pred cceeecCCceEEEEEcCCCCChhhHHhhHH-hhhhhccccee----ecCCCCCCchHHHHHHHHcCCcccccCCcccchH
Q 003258 343 IDIKVECETRVVVITGPNTGGKTASMKTLG-LASLMSKAGLY----LPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG 417 (835)
Q Consensus 343 isl~l~~g~~~~~I~GpNGsGKSTlLK~iG-li~~ma~~G~~----vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSg 417 (835)
++..+..+..+++|+||||+||||+++.+. .+.. .... .+... ....++..+...+|.... ......+-.
T Consensus 35 l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~---~~~~~~~~~~~~~-~~~~~l~~i~~~lG~~~~-~~~~~~~~~ 109 (269)
T TIGR03015 35 LEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ---ERVVAAKLVNTRV-DAEDLLRMVAADFGLETE-GRDKAALLR 109 (269)
T ss_pred HHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC---CCeEEeeeeCCCC-CHHHHHHHHHHHcCCCCC-CCCHHHHHH
Confidence 334445543589999999999999999882 1110 1111 11111 111234455666665421 110000101
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCc-EEEEEecchhH
Q 003258 418 HISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTTHYADL 476 (835)
Q Consensus 418 g~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~-~viitTH~~el 476 (835)
..............+.++++||. -.+++.....|.. +.+.....+. ..|+.|...++
T Consensus 110 ~l~~~l~~~~~~~~~~vliiDe~-~~l~~~~~~~l~~-l~~~~~~~~~~~~vvl~g~~~~ 167 (269)
T TIGR03015 110 ELEDFLIEQFAAGKRALLVVDEA-QNLTPELLEELRM-LSNFQTDNAKLLQIFLVGQPEF 167 (269)
T ss_pred HHHHHHHHHHhCCCCeEEEEECc-ccCCHHHHHHHHH-HhCcccCCCCeEEEEEcCCHHH
Confidence 11111112233556679999994 4567665554443 3333222222 23455555444
No 499
>PRK03918 chromosome segregation protein; Provisional
Probab=97.38 E-value=0.0054 Score=77.14 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=23.0
Q ss_pred ceeecCCceEEEEEcCCCCChhhHHhhHHh
Q 003258 344 DIKVECETRVVVITGPNTGGKTASMKTLGL 373 (835)
Q Consensus 344 sl~l~~g~~~~~I~GpNGsGKSTlLK~iGl 373 (835)
++.+.+| +.+|+||||+||||+|.+|..
T Consensus 18 ~i~f~~g--~~~i~G~nG~GKStil~ai~~ 45 (880)
T PRK03918 18 VVEFDDG--INLIIGQNGSGKSSILEAILV 45 (880)
T ss_pred eEecCCC--cEEEEcCCCCCHHHHHHHHHH
Confidence 4555666 789999999999999999843
No 500
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.38 E-value=0.00095 Score=69.96 Aligned_cols=122 Identities=18% Similarity=0.197 Sum_probs=66.4
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhh-hcccceeecCCCCCCchHHHHHHHHcCCc--ccccC-------Ccccch
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDH--QSLEQ-------NLSTFS 416 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~-ma~~G~~vP~~~~~~i~~~d~i~~~ig~~--~~~~~-------~lstfS 416 (835)
+++| .++.|.|+.|+|||+|.-.+..-.+ ....++|+-.+.+ ..-+-+.+..+|.+ ...+. ....++
T Consensus 13 i~~g-~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~--~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 89 (224)
T TIGR03880 13 FPEG-HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER--EERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFK 89 (224)
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC--HHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHH
Confidence 3567 8999999999999999887732211 2344556655441 11222223334431 11111 111111
Q ss_pred ---HHHH-HHHHHHHHcCCCcEEEEeCCC-----CCCCHHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 003258 417 ---GHIS-RIVDILELVSRESLVLIDEIG-----SGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 417 ---gg~~-rl~~~~~la~~~~LlLLDEp~-----~glDp~~~~aL~~all~~l~~~~~~viitTH~ 473 (835)
..+. .+..+.. -.+++++++|=++ .+.|+..+..+.. ++..+.+.+.|++++||.
T Consensus 90 ~~~~~l~~~~~~~i~-~~~~~~vVIDsls~l~~~~~~~~~~r~~l~~-l~~~lk~~~~tvll~s~~ 153 (224)
T TIGR03880 90 TSLNRIKNELPILIK-ELGASRVVIDPISLLETLFDDDAERRTELFR-FYSSLRETGVTTILTSEA 153 (224)
T ss_pred hhHHHHHHHHHHHHH-HhCCCEEEEcChHHHhhhcCCHHHHHHHHHH-HHHHHHhCCCEEEEEEcc
Confidence 1111 2222211 2357899999433 2333333445554 888888889999999996
Done!