Query 003258
Match_columns 835
No_of_seqs 460 out of 4751
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 18:57:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wb9_A DNA mismatch repair pro 100.0 5.1E-68 1.7E-72 641.8 32.8 481 1-538 302-796 (800)
2 1ewq_A DNA mismatch repair pro 100.0 1.8E-61 6E-66 581.7 38.8 465 1-538 283-762 (765)
3 3thx_B DNA mismatch repair pro 100.0 2.3E-61 8E-66 588.2 36.3 489 1-537 355-876 (918)
4 3thx_A DNA mismatch repair pro 100.0 9.7E-61 3.3E-65 584.4 38.4 496 1-541 337-854 (934)
5 2o8b_B DNA mismatch repair pro 100.0 2.2E-60 7.5E-65 587.8 30.3 491 1-540 431-987 (1022)
6 2pcj_A ABC transporter, lipopr 100.0 8.6E-29 3E-33 257.7 14.9 168 325-494 3-220 (224)
7 1vpl_A ABC transporter, ATP-bi 100.0 2.1E-28 7.3E-33 259.7 15.1 168 325-494 14-227 (256)
8 3gfo_A Cobalt import ATP-bindi 100.0 2E-28 6.8E-33 262.5 14.4 168 325-494 6-225 (275)
9 4g1u_C Hemin import ATP-bindin 100.0 2.5E-28 8.6E-33 260.6 14.9 168 325-494 10-229 (266)
10 3tif_A Uncharacterized ABC tra 100.0 2.3E-28 7.9E-33 256.3 13.9 167 326-494 1-226 (235)
11 2olj_A Amino acid ABC transpor 100.0 4.9E-28 1.7E-32 257.9 15.2 167 326-494 24-240 (263)
12 1ji0_A ABC transporter; ATP bi 99.9 3.3E-28 1.1E-32 255.9 13.3 168 325-494 5-220 (240)
13 3fvq_A Fe(3+) IONS import ATP- 99.9 5.5E-28 1.9E-32 267.2 15.0 168 326-494 4-220 (359)
14 1b0u_A Histidine permease; ABC 99.9 9.3E-28 3.2E-32 255.7 14.5 168 325-494 5-234 (262)
15 1g6h_A High-affinity branched- 99.9 1.4E-27 4.8E-32 253.6 15.8 168 325-494 6-234 (257)
16 3tui_C Methionine import ATP-b 99.9 9.9E-28 3.4E-32 265.3 14.7 170 323-494 21-245 (366)
17 1z47_A CYSA, putative ABC-tran 99.9 1.7E-27 5.7E-32 263.3 14.2 171 323-494 11-227 (355)
18 3rlf_A Maltose/maltodextrin im 99.9 2E-27 6.8E-32 264.4 13.5 168 326-494 3-215 (381)
19 2nq2_C Hypothetical ABC transp 99.9 3.6E-27 1.2E-31 250.0 14.8 163 326-490 4-206 (253)
20 2yyz_A Sugar ABC transporter, 99.9 4.2E-27 1.4E-31 260.7 14.7 168 326-494 3-215 (359)
21 2yz2_A Putative ABC transporte 99.9 4.8E-27 1.6E-31 250.8 14.5 167 326-494 2-219 (266)
22 2d2e_A SUFC protein; ABC-ATPas 99.9 3.8E-27 1.3E-31 249.3 12.5 167 326-494 3-225 (250)
23 2it1_A 362AA long hypothetical 99.9 4.9E-27 1.7E-31 260.4 13.4 168 326-494 3-215 (362)
24 2ihy_A ABC transporter, ATP-bi 99.9 3.9E-27 1.3E-31 253.0 12.2 169 324-494 19-244 (279)
25 3d31_A Sulfate/molybdate ABC t 99.9 6.2E-27 2.1E-31 258.4 14.1 168 326-494 1-209 (348)
26 2onk_A Molybdate/tungstate ABC 99.9 4.3E-27 1.5E-31 247.4 12.2 165 326-494 1-208 (240)
27 2ixe_A Antigen peptide transpo 99.9 7.3E-27 2.5E-31 250.0 12.8 168 325-494 15-237 (271)
28 1v43_A Sugar-binding transport 99.9 7.3E-27 2.5E-31 259.9 12.5 168 326-494 11-223 (372)
29 1mv5_A LMRA, multidrug resista 99.9 9.3E-27 3.2E-31 245.3 12.6 165 326-493 1-217 (243)
30 1g29_1 MALK, maltose transport 99.9 1.4E-26 4.9E-31 257.8 14.0 168 326-494 3-221 (372)
31 2ff7_A Alpha-hemolysin translo 99.9 1.7E-26 5.9E-31 243.9 13.6 166 326-494 7-224 (247)
32 1oxx_K GLCV, glucose, ABC tran 99.9 9.1E-27 3.1E-31 257.8 12.0 168 326-494 3-222 (353)
33 1sgw_A Putative ABC transporte 99.9 1.1E-26 3.8E-31 240.1 11.4 158 325-486 9-206 (214)
34 2zu0_C Probable ATP-dependent 99.9 2.2E-26 7.7E-31 245.7 13.3 169 324-494 18-246 (267)
35 2qi9_C Vitamin B12 import ATP- 99.9 3.6E-26 1.2E-30 241.6 12.7 164 326-494 4-214 (249)
36 2pjz_A Hypothetical protein ST 99.9 4.6E-26 1.6E-30 242.6 13.5 162 326-494 1-207 (263)
37 2pze_A Cystic fibrosis transme 99.9 2E-26 6.8E-31 240.7 9.9 167 325-494 5-210 (229)
38 2cbz_A Multidrug resistance-as 99.9 3.3E-26 1.1E-30 240.3 10.4 165 326-493 3-208 (237)
39 2ghi_A Transport protein; mult 99.9 1.6E-25 5.4E-30 238.3 12.9 167 325-494 16-234 (260)
40 3nh6_A ATP-binding cassette SU 99.9 2.3E-25 7.8E-30 242.0 11.5 167 325-494 52-269 (306)
41 3gd7_A Fusion complex of cysti 99.9 1.7E-24 5.8E-29 242.3 9.4 167 325-494 18-234 (390)
42 2bbs_A Cystic fibrosis transme 99.9 2.2E-24 7.6E-29 232.8 8.7 166 325-494 39-239 (290)
43 3ozx_A RNAse L inhibitor; ATP 99.9 1.4E-23 4.6E-28 244.6 13.3 164 324-488 267-461 (538)
44 1yqt_A RNAse L inhibitor; ATP- 99.9 2.3E-23 7.9E-28 243.1 14.8 164 324-488 285-477 (538)
45 3bk7_A ABC transporter ATP-bin 99.9 4E-23 1.4E-27 243.7 16.7 164 324-488 355-547 (607)
46 3b5x_A Lipid A export ATP-bind 99.9 4E-23 1.4E-27 243.6 14.6 168 324-494 339-559 (582)
47 1yqt_A RNAse L inhibitor; ATP- 99.9 5.8E-23 2E-27 239.7 14.5 156 330-488 25-233 (538)
48 3bk7_A ABC transporter ATP-bin 99.9 1E-22 3.4E-27 240.4 15.7 156 330-488 95-303 (607)
49 2zqe_A MUTS2 protein; alpha/be 99.9 4E-23 1.4E-27 181.0 8.3 75 761-835 4-82 (83)
50 3b60_A Lipid A export ATP-bind 99.9 4.8E-23 1.6E-27 243.0 11.5 168 324-494 339-559 (582)
51 2yl4_A ATP-binding cassette SU 99.9 1.6E-22 5.4E-27 239.2 13.3 167 325-494 339-562 (595)
52 3qf4_B Uncharacterized ABC tra 99.9 1.2E-22 4.3E-27 240.1 12.3 168 324-494 352-570 (598)
53 3qf4_A ABC transporter, ATP-bi 99.9 1.5E-22 5E-27 238.9 12.4 167 325-494 340-558 (587)
54 2iw3_A Elongation factor 3A; a 99.9 7.6E-23 2.6E-27 249.8 10.0 95 396-494 881-979 (986)
55 4a82_A Cystic fibrosis transme 99.9 1.9E-22 6.4E-27 237.7 12.3 167 325-494 338-556 (578)
56 3j16_B RLI1P; ribosome recycli 99.9 6.4E-22 2.2E-26 233.2 14.6 148 331-488 82-296 (608)
57 2iw3_A Elongation factor 3A; a 99.9 1.4E-21 4.7E-26 238.7 16.4 161 326-492 435-624 (986)
58 3j16_B RLI1P; ribosome recycli 99.8 1.8E-21 6.3E-26 229.3 13.6 164 330-493 350-550 (608)
59 3ozx_A RNAse L inhibitor; ATP 99.8 8.6E-21 2.9E-25 221.1 14.6 148 331-489 4-213 (538)
60 3ux8_A Excinuclease ABC, A sub 99.8 2.1E-20 7.1E-25 224.0 14.7 94 399-493 186-289 (670)
61 3g5u_A MCG1178, multidrug resi 99.8 5.7E-20 2E-24 233.9 11.9 168 324-494 1028-1250(1284)
62 3g5u_A MCG1178, multidrug resi 99.8 1.1E-19 3.8E-24 231.3 12.5 167 325-494 386-605 (1284)
63 3qd7_X Uncharacterized protein 99.8 5.8E-20 2E-24 175.6 7.2 76 760-835 46-131 (137)
64 3ux8_A Excinuclease ABC, A sub 99.8 5.5E-19 1.9E-23 211.6 15.2 95 399-494 527-632 (670)
65 4f4c_A Multidrug resistance pr 99.8 7.5E-19 2.6E-23 224.3 12.7 167 324-494 1074-1296(1321)
66 4f4c_A Multidrug resistance pr 99.8 1.1E-18 3.6E-23 222.8 13.1 167 324-493 413-632 (1321)
67 2r6f_A Excinuclease ABC subuni 99.8 4.2E-18 1.4E-22 206.7 16.0 97 397-494 827-934 (972)
68 2vf7_A UVRA2, excinuclease ABC 99.7 7.7E-18 2.6E-22 204.0 17.3 97 397-494 712-819 (842)
69 2ygr_A Uvrabc system protein A 99.7 7.4E-18 2.5E-22 205.2 16.5 97 397-494 845-952 (993)
70 4gp7_A Metallophosphoesterase; 99.7 8E-19 2.7E-23 174.5 6.1 134 342-478 1-163 (171)
71 3pih_A Uvrabc system protein A 99.7 7.8E-18 2.7E-22 205.5 14.1 97 397-494 787-894 (916)
72 4aby_A DNA repair protein RECN 99.7 1.8E-17 6.1E-22 186.9 15.0 83 410-494 290-380 (415)
73 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 3.8E-17 1.3E-21 181.9 14.9 83 409-492 274-363 (365)
74 2npi_A Protein CLP1; CLP1-PCF1 99.7 7.5E-19 2.6E-23 201.0 -3.5 157 324-492 116-329 (460)
75 1e69_A Chromosome segregation 99.6 1E-15 3.5E-20 167.4 14.5 83 408-492 213-302 (322)
76 1ye8_A Protein THEP1, hypothet 99.6 1.9E-16 6.5E-21 158.8 4.9 125 353-482 2-152 (178)
77 2d9i_A NEDD4-binding protein 2 99.6 2.5E-15 8.4E-20 135.5 7.7 71 760-835 7-90 (96)
78 3qkt_A DNA double-strand break 99.6 1.2E-14 4.3E-19 159.9 13.6 78 409-487 243-327 (339)
79 3b85_A Phosphate starvation-in 99.6 1.2E-16 4E-21 164.3 -3.1 122 347-478 19-162 (208)
80 1tq4_A IIGP1, interferon-induc 99.5 1.1E-15 3.6E-20 172.3 -2.2 139 342-484 41-248 (413)
81 1tf7_A KAIC; homohexamer, hexa 99.5 2.2E-14 7.5E-19 167.0 7.6 160 326-490 257-444 (525)
82 2vkc_A NEDD4-binding protein 2 99.5 3.9E-14 1.3E-18 135.5 7.2 70 761-835 53-135 (135)
83 2ehv_A Hypothetical protein PH 99.4 1.3E-13 4.4E-18 143.4 8.6 156 326-487 6-206 (251)
84 2pt7_A CAG-ALFA; ATPase, prote 99.4 1.3E-14 4.5E-19 159.3 -0.9 137 329-490 151-291 (330)
85 2obl_A ESCN; ATPase, hydrolase 99.4 4.7E-14 1.6E-18 155.8 2.9 153 326-494 45-247 (347)
86 3fau_A NEDD4-binding protein 2 99.4 2.6E-13 8.9E-18 118.6 5.3 68 763-835 2-82 (82)
87 1znw_A Guanylate kinase, GMP k 99.4 1.6E-14 5.6E-19 147.5 -3.9 59 427-486 137-201 (207)
88 4a74_A DNA repair and recombin 99.4 1.1E-12 3.6E-17 134.7 8.9 143 346-489 21-200 (231)
89 2v9p_A Replication protein E1; 99.3 8E-15 2.7E-19 158.8 -8.4 140 326-494 101-258 (305)
90 1f2t_B RAD50 ABC-ATPase; DNA d 99.3 2.1E-12 7.2E-17 125.5 8.6 78 408-486 51-135 (148)
91 2w0m_A SSO2452; RECA, SSPF, un 99.3 9E-12 3.1E-16 127.6 13.3 140 346-488 19-191 (235)
92 1nlf_A Regulatory protein REPA 99.3 5.1E-12 1.7E-16 134.9 11.8 126 347-476 27-183 (279)
93 1cr0_A DNA primase/helicase; R 99.3 5.2E-12 1.8E-16 135.8 11.8 148 342-491 27-237 (296)
94 2eyu_A Twitching motility prot 99.3 2.5E-13 8.7E-18 144.2 0.6 125 342-488 19-147 (261)
95 1tf7_A KAIC; homohexamer, hexa 99.3 2.5E-13 8.4E-18 158.2 0.5 154 330-488 16-209 (525)
96 3aez_A Pantothenate kinase; tr 99.3 2.5E-14 8.5E-19 155.9 -7.9 152 324-488 41-244 (312)
97 2dpy_A FLII, flagellum-specifi 99.3 8.3E-13 2.8E-17 150.2 4.0 157 325-494 130-336 (438)
98 3b9q_A Chloroplast SRP recepto 99.3 1.5E-12 5.3E-17 141.0 4.2 122 342-474 92-257 (302)
99 3ec2_A DNA replication protein 99.2 2.1E-12 7.2E-17 128.4 2.1 111 343-474 31-143 (180)
100 2og2_A Putative signal recogni 99.2 4.9E-12 1.7E-16 140.0 5.2 122 342-474 149-314 (359)
101 2cvh_A DNA repair and recombin 99.2 1E-10 3.5E-15 119.1 12.5 140 346-488 16-184 (220)
102 3pih_A Uvrabc system protein A 99.1 6.7E-11 2.3E-15 144.6 10.5 97 397-494 446-552 (916)
103 1z6g_A Guanylate kinase; struc 99.1 1.1E-12 3.8E-17 135.3 -4.9 123 342-475 15-195 (218)
104 2r6f_A Excinuclease ABC subuni 99.1 1.4E-10 4.7E-15 141.3 11.4 95 399-494 488-592 (972)
105 3sop_A Neuronal-specific septi 99.1 2.8E-12 9.5E-17 136.9 -3.5 114 353-475 4-151 (270)
106 2ygr_A Uvrabc system protein A 99.1 1.6E-10 5.5E-15 141.1 10.7 95 399-494 505-609 (993)
107 2vf7_A UVRA2, excinuclease ABC 99.1 2E-10 6.7E-15 139.5 11.3 96 398-494 362-467 (842)
108 3jvv_A Twitching mobility prot 99.1 2.2E-11 7.6E-16 134.8 2.1 124 346-488 119-245 (356)
109 1pzn_A RAD51, DNA repair and r 99.1 4E-10 1.4E-14 124.6 11.9 131 344-475 125-287 (349)
110 2jeo_A Uridine-cytidine kinase 99.0 3.4E-11 1.2E-15 126.1 2.0 122 342-478 17-170 (245)
111 3asz_A Uridine kinase; cytidin 99.0 6.1E-13 2.1E-17 135.5 -11.2 123 348-474 4-161 (211)
112 2i3b_A HCR-ntpase, human cance 99.0 1.7E-11 5.9E-16 123.9 -1.3 129 352-492 2-166 (189)
113 1pui_A ENGB, probable GTP-bind 99.0 3E-10 1E-14 114.7 6.7 135 326-462 3-199 (210)
114 1n0w_A DNA repair protein RAD5 99.0 1.2E-09 4.2E-14 112.8 11.1 127 347-475 21-175 (243)
115 2kjq_A DNAA-related protein; s 99.0 1.1E-09 3.7E-14 106.3 9.1 88 349-473 35-124 (149)
116 2qnr_A Septin-2, protein NEDD5 98.9 8.6E-11 2.9E-15 127.2 -1.0 35 330-371 2-38 (301)
117 2qag_C Septin-7; cell cycle, c 98.9 2.6E-10 8.9E-15 128.7 2.7 130 325-475 10-178 (418)
118 3kta_B Chromosome segregation 98.9 2.4E-09 8.2E-14 106.6 9.1 76 409-486 59-139 (173)
119 3szr_A Interferon-induced GTP- 98.9 2.9E-10 1E-14 134.5 2.3 47 430-476 145-198 (608)
120 2qag_B Septin-6, protein NEDD5 98.9 3.2E-09 1.1E-13 119.7 9.9 146 327-474 17-219 (427)
121 2ewv_A Twitching motility prot 98.8 4.9E-10 1.7E-14 124.9 1.3 121 347-486 133-256 (372)
122 4ad8_A DNA repair protein RECN 98.8 1.9E-09 6.7E-14 125.1 6.0 79 409-489 391-473 (517)
123 1lw7_A Transcriptional regulat 98.8 3E-10 1E-14 126.1 -1.2 144 342-486 160-341 (365)
124 1rj9_A FTSY, signal recognitio 98.7 2.7E-09 9.3E-14 115.6 1.6 118 349-475 101-259 (304)
125 1s96_A Guanylate kinase, GMP k 98.7 1.1E-08 3.7E-13 105.7 5.4 116 345-476 11-142 (219)
126 3lda_A DNA repair protein RAD5 98.7 4.9E-08 1.7E-12 109.6 11.1 127 347-474 175-328 (400)
127 1w1w_A Structural maintenance 98.7 3.1E-08 1.1E-12 112.3 8.9 78 409-487 328-410 (430)
128 1sxj_E Activator 1 40 kDa subu 98.7 4E-08 1.4E-12 107.6 9.2 44 429-475 132-175 (354)
129 1htw_A HI0065; nucleotide-bind 98.6 2.5E-09 8.5E-14 104.9 -1.5 55 329-393 10-66 (158)
130 3auy_A DNA double-strand break 98.6 4.6E-08 1.6E-12 108.7 8.1 76 410-487 276-359 (371)
131 2px0_A Flagellar biosynthesis 98.6 6.3E-07 2.2E-11 96.6 14.9 133 349-493 104-246 (296)
132 2gza_A Type IV secretion syste 98.5 9.8E-09 3.3E-13 113.9 0.3 139 328-488 137-301 (361)
133 2o5v_A DNA replication and rep 98.5 7.1E-08 2.4E-12 106.8 5.7 79 409-494 259-348 (359)
134 2dr3_A UPF0273 protein PH0284; 98.5 9.5E-07 3.3E-11 91.0 13.6 126 346-475 19-174 (247)
135 1ls1_A Signal recognition part 98.4 1.5E-06 5.1E-11 93.7 12.0 132 330-471 80-219 (295)
136 2zr9_A Protein RECA, recombina 98.4 1.6E-06 5.4E-11 95.7 12.3 122 347-474 58-198 (349)
137 2bbw_A Adenylate kinase 4, AK4 98.3 3.7E-08 1.3E-12 102.8 -1.8 31 429-459 162-196 (246)
138 1udx_A The GTP-binding protein 98.3 9.3E-08 3.2E-12 107.8 0.0 133 342-483 149-319 (416)
139 2bdt_A BH3686; alpha-beta prot 98.3 3.7E-08 1.3E-12 98.2 -3.3 49 442-494 126-176 (189)
140 1vma_A Cell division protein F 98.2 4.9E-06 1.7E-10 90.1 12.3 94 342-442 96-197 (306)
141 3e70_C DPA, signal recognition 98.2 3.6E-06 1.2E-10 92.0 10.4 26 348-374 127-153 (328)
142 1sq5_A Pantothenate kinase; P- 98.2 3.1E-07 1.1E-11 99.5 0.8 48 325-374 36-104 (308)
143 1zp6_A Hypothetical protein AT 98.2 7.7E-08 2.6E-12 95.8 -3.8 24 347-371 6-29 (191)
144 2yhs_A FTSY, cell division pro 98.1 8.6E-06 2.9E-10 93.1 12.1 33 342-375 285-318 (503)
145 3hr8_A Protein RECA; alpha and 98.1 2.5E-05 8.4E-10 86.3 14.9 122 347-473 58-197 (356)
146 1odf_A YGR205W, hypothetical 3 98.1 5E-07 1.7E-11 97.1 0.4 97 349-448 30-169 (290)
147 1nij_A Hypothetical protein YJ 98.0 1.8E-06 6E-11 94.0 3.1 20 352-371 5-24 (318)
148 1fnn_A CDC6P, cell division co 98.0 3.2E-05 1.1E-09 85.0 12.9 118 353-476 46-171 (389)
149 2r6a_A DNAB helicase, replicat 97.9 3.4E-05 1.2E-09 87.9 11.2 126 345-472 198-362 (454)
150 3lnc_A Guanylate kinase, GMP k 97.9 3.8E-06 1.3E-10 86.6 2.8 29 342-371 19-47 (231)
151 2xau_A PRE-mRNA-splicing facto 97.9 9.4E-06 3.2E-10 98.5 6.0 132 347-481 106-260 (773)
152 2qm8_A GTPase/ATPase; G protei 97.9 8E-07 2.7E-11 97.6 -3.1 45 326-371 29-75 (337)
153 2ce7_A Cell division protein F 97.8 5.7E-05 1.9E-09 86.5 11.1 107 342-475 43-165 (476)
154 3euj_A Chromosome partition pr 97.8 1.3E-05 4.3E-10 91.9 4.3 41 342-392 22-62 (483)
155 1v5w_A DMC1, meiotic recombina 97.7 8.5E-05 2.9E-09 81.5 10.8 128 347-475 119-275 (343)
156 3tr0_A Guanylate kinase, GMP k 97.7 9.7E-06 3.3E-10 81.2 2.2 27 344-371 1-27 (205)
157 3nwj_A ATSK2; P loop, shikimat 97.7 6.7E-06 2.3E-10 86.5 0.1 46 325-371 16-68 (250)
158 2z4s_A Chromosomal replication 97.6 2.8E-05 9.7E-10 88.3 4.1 102 352-474 131-237 (440)
159 2qby_A CDC6 homolog 1, cell di 97.6 3.1E-05 1E-09 84.7 4.2 120 352-476 46-175 (386)
160 2z43_A DNA repair and recombin 97.6 0.00015 5.3E-09 78.7 9.5 127 347-474 104-258 (324)
161 3kl4_A SRP54, signal recogniti 97.5 0.00029 1E-08 79.6 11.4 121 349-473 96-223 (433)
162 1qhl_A Protein (cell division 97.5 3.3E-06 1.1E-10 87.5 -4.5 50 326-390 9-58 (227)
163 2rcn_A Probable GTPase ENGC; Y 97.5 2.6E-05 8.8E-10 86.1 2.3 96 349-462 214-346 (358)
164 1u94_A RECA protein, recombina 97.5 0.00062 2.1E-08 75.1 13.3 122 347-474 60-200 (356)
165 3kta_A Chromosome segregation 97.5 4.2E-05 1.4E-09 75.3 3.4 28 342-371 19-46 (182)
166 1ni3_A YCHF GTPase, YCHF GTP-b 97.5 1.3E-06 4.6E-11 97.5 -8.7 59 431-492 139-203 (392)
167 1ixz_A ATP-dependent metallopr 97.5 5.9E-05 2E-09 78.5 4.2 40 329-371 28-69 (254)
168 2w58_A DNAI, primosome compone 97.4 4.4E-05 1.5E-09 76.5 2.8 102 352-473 55-158 (202)
169 2ius_A DNA translocase FTSK; n 97.4 4.9E-05 1.7E-09 87.6 3.3 29 342-371 159-187 (512)
170 2e87_A Hypothetical protein PH 97.4 6.5E-05 2.2E-09 82.8 4.1 113 352-474 168-292 (357)
171 3c8u_A Fructokinase; YP_612366 97.4 7.8E-05 2.7E-09 75.5 4.3 28 347-375 19-47 (208)
172 1p9r_A General secretion pathw 97.4 1.8E-05 6E-10 89.3 -1.2 43 326-371 143-187 (418)
173 2x8a_A Nuclear valosin-contain 97.4 0.00025 8.7E-09 75.2 7.5 27 342-371 38-64 (274)
174 1iy2_A ATP-dependent metallopr 97.3 8.6E-05 2.9E-09 78.6 3.7 41 328-371 51-93 (278)
175 3k1j_A LON protease, ATP-depen 97.3 8.8E-06 3E-10 96.1 -4.4 37 334-371 42-80 (604)
176 1in4_A RUVB, holliday junction 97.3 3.5E-05 1.2E-09 84.1 0.5 45 327-371 19-71 (334)
177 1zu4_A FTSY; GTPase, signal re 97.3 0.0021 7.3E-08 69.7 14.6 30 342-372 97-126 (320)
178 3a00_A Guanylate kinase, GMP k 97.3 5.3E-05 1.8E-09 75.3 1.7 20 352-371 2-21 (186)
179 1lvg_A Guanylate kinase, GMP k 97.3 4.6E-05 1.6E-09 76.8 1.2 26 348-374 2-28 (198)
180 1qvr_A CLPB protein; coiled co 97.3 0.0012 4E-08 81.1 13.9 21 352-372 192-212 (854)
181 4a1f_A DNAB helicase, replicat 97.3 0.00035 1.2E-08 76.5 7.7 119 346-474 42-166 (338)
182 1oix_A RAS-related protein RAB 97.3 0.00016 5.5E-09 71.8 4.5 36 422-459 154-189 (191)
183 2j41_A Guanylate kinase; GMP, 97.2 8.4E-05 2.9E-09 74.3 2.1 25 346-371 2-26 (207)
184 3m6a_A ATP-dependent protease 97.2 2.4E-05 8.1E-10 91.3 -2.6 40 330-371 87-128 (543)
185 3b9p_A CG5977-PA, isoform A; A 97.2 0.0011 3.6E-08 70.5 10.1 101 352-475 55-170 (297)
186 2i1q_A DNA repair and recombin 97.2 0.0012 4E-08 71.5 10.1 127 347-474 95-259 (322)
187 1w1w_A Structural maintenance 97.1 0.00016 5.6E-09 81.6 3.1 40 327-371 7-46 (430)
188 3uie_A Adenylyl-sulfate kinase 97.1 0.00012 4.2E-09 73.4 1.9 40 331-371 4-45 (200)
189 3bos_A Putative DNA replicatio 97.1 0.00046 1.6E-08 70.0 5.3 92 352-473 53-147 (242)
190 2oap_1 GSPE-2, type II secreti 97.0 0.00012 4.1E-09 84.7 0.9 38 342-388 252-289 (511)
191 1l8q_A Chromosomal replication 97.0 0.00069 2.4E-08 73.1 6.6 101 352-473 38-140 (324)
192 1xp8_A RECA protein, recombina 97.0 0.0071 2.4E-07 66.9 14.5 122 347-474 71-211 (366)
193 3pxg_A Negative regulator of g 97.0 0.001 3.5E-08 76.0 7.8 22 352-373 202-223 (468)
194 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.0013 4.5E-08 71.3 8.0 106 346-473 119-235 (331)
195 1kgd_A CASK, peripheral plasma 96.9 0.00032 1.1E-08 69.2 3.0 22 349-371 4-25 (180)
196 3llm_A ATP-dependent RNA helic 96.9 0.0012 4.1E-08 68.0 7.3 124 348-475 74-221 (235)
197 4e22_A Cytidylate kinase; P-lo 96.9 0.00028 9.5E-09 73.8 2.1 32 348-388 25-59 (252)
198 2o5v_A DNA replication and rep 96.9 0.00056 1.9E-08 75.5 4.5 31 342-374 19-49 (359)
199 1u0l_A Probable GTPase ENGC; p 96.9 0.00027 9.1E-09 76.1 1.7 36 345-389 164-199 (301)
200 4eun_A Thermoresistant glucoki 96.9 0.00041 1.4E-08 69.6 3.0 27 344-371 23-49 (200)
201 2v1u_A Cell division control p 96.8 0.0018 6E-08 70.7 8.1 119 352-475 45-178 (387)
202 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00052 1.8E-08 66.0 3.0 28 344-373 18-45 (149)
203 3bh0_A DNAB-like replicative h 96.8 0.0022 7.5E-08 69.3 8.2 121 346-473 64-190 (315)
204 2dhr_A FTSH; AAA+ protein, hex 96.8 0.00073 2.5E-08 77.8 4.3 40 329-371 43-84 (499)
205 3tau_A Guanylate kinase, GMP k 96.7 0.00042 1.4E-08 70.1 2.0 23 348-371 6-28 (208)
206 3vaa_A Shikimate kinase, SK; s 96.7 0.00059 2E-08 68.4 3.0 29 342-371 17-45 (199)
207 3cf0_A Transitional endoplasmi 96.7 0.0016 5.3E-08 69.9 6.5 26 346-372 45-70 (301)
208 1njg_A DNA polymerase III subu 96.7 0.0036 1.2E-07 62.7 8.8 20 352-371 46-65 (250)
209 2ffh_A Protein (FFH); SRP54, s 96.7 0.0059 2E-07 68.8 11.2 39 331-372 81-119 (425)
210 1t9h_A YLOQ, probable GTPase E 96.7 0.00026 9E-09 76.5 -0.1 36 345-389 168-203 (307)
211 1sxj_C Activator 1 40 kDa subu 96.7 0.00063 2.2E-08 74.0 2.9 37 334-371 26-66 (340)
212 2qgz_A Helicase loader, putati 96.7 0.00079 2.7E-08 72.7 3.6 101 352-473 153-257 (308)
213 1lv7_A FTSH; alpha/beta domain 96.6 0.0051 1.7E-07 63.8 9.5 20 353-372 47-66 (257)
214 1ypw_A Transitional endoplasmi 96.6 0.0013 4.3E-08 80.3 5.4 26 345-371 233-258 (806)
215 1j8m_F SRP54, signal recogniti 96.6 0.018 6.2E-07 61.7 13.4 39 332-372 80-119 (297)
216 2yv5_A YJEQ protein; hydrolase 96.6 0.00072 2.5E-08 72.8 2.3 33 347-389 162-194 (302)
217 2r8r_A Sensor protein; KDPD, P 96.5 0.0014 4.8E-08 67.6 4.2 126 349-482 4-135 (228)
218 3qks_A DNA double-strand break 96.5 0.0019 6.4E-08 65.3 4.9 29 343-373 17-45 (203)
219 3tqc_A Pantothenate kinase; bi 96.5 0.00033 1.1E-08 76.2 -1.0 20 352-371 93-112 (321)
220 2vp4_A Deoxynucleoside kinase; 96.5 0.0009 3.1E-08 68.8 2.3 24 347-371 17-40 (230)
221 3h4m_A Proteasome-activating n 96.5 0.0076 2.6E-07 63.3 9.5 23 348-371 49-71 (285)
222 3lxx_A GTPase IMAP family memb 96.5 0.0013 4.5E-08 67.6 3.5 46 427-473 108-155 (239)
223 1knq_A Gluconate kinase; ALFA/ 96.5 0.0013 4.5E-08 64.0 3.2 22 349-371 7-28 (175)
224 2p67_A LAO/AO transport system 96.4 0.0011 3.6E-08 72.7 2.4 42 329-371 33-76 (341)
225 1rz3_A Hypothetical protein rb 96.4 0.00096 3.3E-08 67.0 1.9 24 347-371 19-42 (201)
226 1kag_A SKI, shikimate kinase I 96.4 0.0012 4E-08 64.1 2.3 20 352-371 5-24 (173)
227 3auy_A DNA double-strand break 96.4 0.0026 8.9E-08 70.3 5.3 32 342-375 18-49 (371)
228 3ney_A 55 kDa erythrocyte memb 96.3 0.0016 5.4E-08 65.9 3.0 23 348-371 17-39 (197)
229 3io5_A Recombination and repai 96.3 0.029 1E-06 60.6 12.9 123 347-475 26-173 (333)
230 2dy1_A Elongation factor G; tr 96.3 0.0037 1.3E-07 74.6 6.5 119 345-476 4-138 (665)
231 3dm5_A SRP54, signal recogniti 96.3 0.041 1.4E-06 62.2 14.5 103 352-459 101-210 (443)
232 3t15_A Ribulose bisphosphate c 96.3 0.004 1.4E-07 66.5 5.9 21 352-372 37-57 (293)
233 1sxj_D Activator 1 41 kDa subu 96.2 0.01 3.4E-07 64.1 9.1 43 430-475 132-174 (353)
234 2p65_A Hypothetical protein PF 96.2 0.00047 1.6E-08 66.9 -1.6 21 352-372 44-64 (187)
235 1jbk_A CLPB protein; beta barr 96.2 0.00068 2.3E-08 65.7 -0.7 20 352-371 44-63 (195)
236 1svm_A Large T antigen; AAA+ f 96.2 0.0016 5.4E-08 72.4 2.1 29 342-371 161-189 (377)
237 4fcw_A Chaperone protein CLPB; 96.2 0.018 6E-07 61.1 10.3 22 352-373 48-69 (311)
238 2q6t_A DNAB replication FORK h 96.1 0.025 8.4E-07 64.0 12.0 97 347-448 197-297 (444)
239 3cmw_A Protein RECA, recombina 96.1 0.03 1E-06 72.6 14.0 121 347-473 729-868 (1706)
240 1ega_A Protein (GTP-binding pr 96.1 0.014 4.9E-07 62.5 9.3 64 415-483 101-169 (301)
241 2b8t_A Thymidine kinase; deoxy 96.1 0.0052 1.8E-07 63.3 5.4 124 349-486 11-149 (223)
242 2qz4_A Paraplegin; AAA+, SPG7, 96.0 0.036 1.2E-06 57.1 11.6 21 352-372 40-60 (262)
243 4eaq_A DTMP kinase, thymidylat 96.0 0.027 9.1E-07 57.9 10.5 23 348-371 24-46 (229)
244 2f1r_A Molybdopterin-guanine d 96.0 0.00092 3.1E-08 66.0 -0.7 20 352-371 3-22 (171)
245 3co5_A Putative two-component 95.9 0.023 7.9E-07 53.7 8.9 88 352-473 28-115 (143)
246 1jjv_A Dephospho-COA kinase; P 95.9 0.003 1E-07 63.2 2.8 20 352-371 3-22 (206)
247 2qt1_A Nicotinamide riboside k 95.9 0.0032 1.1E-07 63.1 3.0 25 346-371 17-41 (207)
248 3cmw_A Protein RECA, recombina 95.9 0.041 1.4E-06 71.4 13.6 122 347-474 380-520 (1706)
249 3d8b_A Fidgetin-like protein 1 95.8 0.036 1.2E-06 60.7 11.3 21 352-372 118-138 (357)
250 2if2_A Dephospho-COA kinase; a 95.8 0.0034 1.2E-07 62.6 2.7 19 353-371 3-21 (204)
251 1y63_A LMAJ004144AAA protein; 95.8 0.0039 1.3E-07 61.6 3.0 29 342-371 2-30 (184)
252 3cmu_A Protein RECA, recombina 95.8 0.047 1.6E-06 71.8 13.6 120 347-473 1424-1563(2050)
253 2chg_A Replication factor C sm 95.8 0.051 1.8E-06 53.5 11.1 20 353-372 40-59 (226)
254 4ad8_A DNA repair protein RECN 95.7 0.0024 8.3E-08 73.8 1.4 31 342-374 53-83 (517)
255 2zts_A Putative uncharacterize 95.7 0.045 1.5E-06 55.7 10.6 125 347-474 27-182 (251)
256 1cke_A CK, MSSA, protein (cyti 95.7 0.0044 1.5E-07 62.7 2.8 20 352-371 6-25 (227)
257 2orv_A Thymidine kinase; TP4A 95.6 0.039 1.3E-06 56.9 9.7 126 342-486 11-149 (234)
258 3bgw_A DNAB-like replicative h 95.6 0.097 3.3E-06 59.2 14.0 125 347-474 194-360 (444)
259 3n70_A Transport activator; si 95.6 0.022 7.7E-07 53.8 7.3 21 352-372 25-45 (145)
260 3syl_A Protein CBBX; photosynt 95.6 0.017 5.9E-07 61.2 7.2 21 352-372 68-88 (309)
261 3cr8_A Sulfate adenylyltranfer 95.6 0.0026 8.8E-08 74.1 0.7 25 346-371 365-389 (552)
262 2f9l_A RAB11B, member RAS onco 95.5 0.0052 1.8E-07 60.9 2.7 19 353-371 7-25 (199)
263 2pez_A Bifunctional 3'-phospho 95.5 0.0063 2.1E-07 59.5 3.2 22 349-371 4-25 (179)
264 1q57_A DNA primase/helicase; d 95.5 0.053 1.8E-06 62.2 11.4 127 347-475 239-405 (503)
265 1xwi_A SKD1 protein; VPS4B, AA 95.5 0.07 2.4E-06 57.6 11.7 21 352-372 46-66 (322)
266 4b4t_L 26S protease subunit RP 95.5 0.055 1.9E-06 61.0 11.2 99 352-475 216-331 (437)
267 4b4t_K 26S protease regulatory 95.5 0.078 2.7E-06 59.7 12.3 99 352-475 207-322 (428)
268 1w5s_A Origin recognition comp 95.4 0.027 9.3E-07 62.0 8.1 87 352-442 51-149 (412)
269 3cmu_A Protein RECA, recombina 95.3 0.091 3.1E-06 69.1 13.5 122 347-474 380-520 (2050)
270 2qor_A Guanylate kinase; phosp 95.2 0.0067 2.3E-07 60.8 2.4 24 347-371 9-32 (204)
271 3t34_A Dynamin-related protein 95.2 0.034 1.2E-06 60.9 8.1 26 342-371 29-54 (360)
272 3pfi_A Holliday junction ATP-d 95.1 0.064 2.2E-06 57.6 9.9 20 352-371 56-75 (338)
273 1ypw_A Transitional endoplasmi 95.0 0.0034 1.1E-07 76.6 -0.7 28 344-372 505-532 (806)
274 3t61_A Gluconokinase; PSI-biol 94.9 0.009 3.1E-07 59.5 2.2 20 352-371 19-38 (202)
275 3ice_A Transcription terminati 94.9 0.0084 2.9E-07 66.5 2.1 46 325-371 132-194 (422)
276 4b4t_J 26S protease regulatory 94.8 0.11 3.6E-06 58.1 10.8 100 352-475 183-298 (405)
277 1d2n_A N-ethylmaleimide-sensit 94.8 0.088 3E-06 54.9 9.6 22 352-373 65-86 (272)
278 1sxj_A Activator 1 95 kDa subu 94.8 0.04 1.4E-06 63.5 7.5 21 352-372 78-98 (516)
279 4b4t_M 26S protease regulatory 94.8 0.077 2.6E-06 59.8 9.5 20 352-371 216-235 (434)
280 2qag_A Septin-2, protein NEDD5 94.7 0.0057 1.9E-07 67.5 0.1 40 325-371 16-57 (361)
281 1jr3_A DNA polymerase III subu 94.7 0.099 3.4E-06 56.7 9.9 20 352-371 39-58 (373)
282 3hu3_A Transitional endoplasmi 94.6 0.025 8.6E-07 64.9 5.3 20 352-371 239-258 (489)
283 2qp9_X Vacuolar protein sortin 94.6 0.081 2.8E-06 57.9 9.2 21 352-372 85-105 (355)
284 1hqc_A RUVB; extended AAA-ATPa 94.5 0.071 2.4E-06 56.7 8.3 21 352-372 39-59 (324)
285 3cm0_A Adenylate kinase; ATP-b 94.5 0.016 5.3E-07 56.7 2.8 22 349-371 3-24 (186)
286 2www_A Methylmalonic aciduria 94.4 0.013 4.4E-07 64.3 2.0 20 352-371 75-94 (349)
287 2yvu_A Probable adenylyl-sulfa 94.4 0.02 7E-07 56.1 3.2 23 348-371 11-33 (186)
288 2qby_B CDC6 homolog 3, cell di 94.3 0.027 9.4E-07 61.4 4.5 21 352-372 46-66 (384)
289 3kb2_A SPBC2 prophage-derived 94.3 0.019 6.4E-07 55.1 2.8 20 352-371 2-21 (173)
290 4b4t_I 26S protease regulatory 94.3 0.19 6.6E-06 56.4 11.2 98 352-475 217-332 (437)
291 3eie_A Vacuolar protein sortin 94.2 0.11 3.7E-06 55.8 8.9 21 352-372 52-72 (322)
292 1m7g_A Adenylylsulfate kinase; 94.2 0.021 7.1E-07 57.5 3.0 26 345-371 20-45 (211)
293 3pxi_A Negative regulator of g 94.2 0.45 1.5E-05 57.3 15.2 23 352-374 202-224 (758)
294 2zan_A Vacuolar protein sortin 94.1 0.081 2.8E-06 59.8 8.0 21 352-372 168-188 (444)
295 3vfd_A Spastin; ATPase, microt 94.1 0.18 6E-06 55.7 10.6 21 352-372 149-169 (389)
296 2bjv_A PSP operon transcriptio 94.1 0.083 2.9E-06 54.8 7.5 22 352-373 30-51 (265)
297 1ojl_A Transcriptional regulat 94.1 0.078 2.7E-06 56.7 7.4 22 352-373 26-47 (304)
298 3pvs_A Replication-associated 94.0 0.14 4.9E-06 57.9 9.7 21 352-372 51-71 (447)
299 2a5y_B CED-4; apoptosis; HET: 94.0 0.33 1.1E-05 56.2 12.9 118 351-479 152-280 (549)
300 3u61_B DNA polymerase accessor 94.0 0.13 4.6E-06 54.8 9.0 43 431-475 105-147 (324)
301 4b4t_H 26S protease regulatory 93.9 0.22 7.6E-06 56.4 11.0 99 352-475 244-359 (467)
302 1ex7_A Guanylate kinase; subst 93.9 0.02 7E-07 57.1 2.3 20 352-371 2-21 (186)
303 1q3t_A Cytidylate kinase; nucl 93.9 0.025 8.7E-07 57.9 3.1 23 348-371 14-36 (236)
304 3lw7_A Adenylate kinase relate 93.9 0.025 8.4E-07 54.0 2.8 20 352-371 2-21 (179)
305 1np6_A Molybdopterin-guanine d 93.9 0.025 8.7E-07 55.7 2.8 20 352-371 7-26 (174)
306 2wji_A Ferrous iron transport 93.8 0.027 9.2E-07 53.9 2.8 20 352-371 4-23 (165)
307 1vht_A Dephospho-COA kinase; s 93.8 0.031 1E-06 56.3 3.2 21 352-372 5-25 (218)
308 1xx6_A Thymidine kinase; NESG, 93.7 0.086 2.9E-06 52.7 6.4 121 349-486 7-141 (191)
309 2ze6_A Isopentenyl transferase 93.6 0.03 1E-06 58.4 3.0 20 352-371 2-21 (253)
310 2rhm_A Putative kinase; P-loop 93.5 0.036 1.2E-06 54.2 3.1 22 349-371 4-25 (193)
311 1g5t_A COB(I)alamin adenosyltr 93.5 0.31 1.1E-05 48.9 10.0 132 353-489 30-180 (196)
312 2gj8_A MNME, tRNA modification 93.4 0.038 1.3E-06 53.4 3.1 20 352-371 5-24 (172)
313 1ly1_A Polynucleotide kinase; 93.4 0.038 1.3E-06 53.3 3.0 20 352-371 3-22 (181)
314 1qhx_A CPT, protein (chloramph 93.3 0.037 1.3E-06 53.5 2.9 20 352-371 4-23 (178)
315 1qvr_A CLPB protein; coiled co 93.3 0.11 3.7E-06 63.7 7.6 23 352-374 589-611 (854)
316 1kht_A Adenylate kinase; phosp 93.3 0.038 1.3E-06 53.8 2.9 20 352-371 4-23 (192)
317 1iqp_A RFCS; clamp loader, ext 93.3 0.1 3.6E-06 55.2 6.5 20 353-372 48-67 (327)
318 2wjg_A FEOB, ferrous iron tran 93.2 0.038 1.3E-06 53.5 2.8 20 352-371 8-27 (188)
319 2iut_A DNA translocase FTSK; n 93.1 0.035 1.2E-06 64.6 2.7 29 342-371 206-234 (574)
320 2p5t_B PEZT; postsegregational 93.1 0.032 1.1E-06 57.9 2.2 24 347-371 29-52 (253)
321 1via_A Shikimate kinase; struc 93.1 0.038 1.3E-06 53.6 2.5 19 353-371 6-24 (175)
322 1ofh_A ATP-dependent HSL prote 93.1 0.21 7.1E-06 52.5 8.5 21 352-372 51-71 (310)
323 1gvn_B Zeta; postsegregational 93.0 0.044 1.5E-06 58.2 3.2 22 349-371 32-53 (287)
324 2ohf_A Protein OLA1, GTP-bindi 93.0 0.075 2.6E-06 59.2 5.0 24 347-371 19-42 (396)
325 2jaq_A Deoxyguanosine kinase; 92.9 0.043 1.5E-06 54.0 2.8 19 353-371 2-20 (205)
326 1uf9_A TT1252 protein; P-loop, 92.9 0.051 1.7E-06 53.6 3.2 20 352-371 9-28 (203)
327 2zej_A Dardarin, leucine-rich 92.8 0.05 1.7E-06 53.0 2.9 19 353-371 4-22 (184)
328 2j9r_A Thymidine kinase; TK1, 92.7 0.22 7.6E-06 50.7 7.6 123 348-487 26-162 (214)
329 3iij_A Coilin-interacting nucl 92.4 0.043 1.5E-06 53.4 1.9 20 352-371 12-31 (180)
330 3r20_A Cytidylate kinase; stru 92.4 0.057 1.9E-06 55.8 2.8 20 352-371 10-29 (233)
331 1gtv_A TMK, thymidylate kinase 92.3 0.03 1E-06 55.9 0.6 19 353-371 2-20 (214)
332 1tev_A UMP-CMP kinase; ploop, 92.2 0.069 2.4E-06 52.0 3.1 20 352-371 4-23 (196)
333 2v54_A DTMP kinase, thymidylat 92.2 0.067 2.3E-06 52.8 3.0 22 349-371 3-24 (204)
334 3ake_A Cytidylate kinase; CMP 92.1 0.065 2.2E-06 53.0 2.8 19 353-371 4-22 (208)
335 2z0h_A DTMP kinase, thymidylat 92.1 0.066 2.3E-06 52.5 2.8 19 353-371 2-20 (197)
336 3te6_A Regulatory protein SIR3 92.1 0.53 1.8E-05 50.8 10.1 115 352-476 46-175 (318)
337 2v3c_C SRP54, signal recogniti 92.1 0.29 1E-05 55.1 8.4 21 352-372 100-120 (432)
338 1nks_A Adenylate kinase; therm 92.1 0.069 2.4E-06 51.9 2.9 20 352-371 2-21 (194)
339 2plr_A DTMP kinase, probable t 92.0 0.078 2.7E-06 52.5 3.2 20 352-371 5-24 (213)
340 2c95_A Adenylate kinase 1; tra 91.9 0.075 2.6E-06 52.0 3.0 22 349-371 8-29 (196)
341 2ga8_A Hypothetical 39.9 kDa p 91.9 0.04 1.4E-06 60.5 1.0 29 342-371 14-44 (359)
342 2vli_A Antibiotic resistance p 91.9 0.064 2.2E-06 52.0 2.4 20 352-371 6-25 (183)
343 2qen_A Walker-type ATPase; unk 91.8 0.32 1.1E-05 51.7 8.1 22 349-371 30-51 (350)
344 1sxj_B Activator 1 37 kDa subu 91.7 0.37 1.3E-05 50.8 8.3 19 354-372 45-63 (323)
345 1w4r_A Thymidine kinase; type 91.6 0.16 5.6E-06 50.9 5.0 107 349-476 19-129 (195)
346 1xjc_A MOBB protein homolog; s 91.6 0.083 2.8E-06 51.9 2.8 20 352-371 5-24 (169)
347 2wwf_A Thymidilate kinase, put 91.6 0.09 3.1E-06 52.2 3.1 23 349-372 9-31 (212)
348 1nn5_A Similar to deoxythymidy 91.5 0.088 3E-06 52.3 3.0 24 348-372 7-30 (215)
349 1w36_D RECD, exodeoxyribonucle 91.5 0.22 7.5E-06 58.6 6.8 20 352-371 165-184 (608)
350 3trf_A Shikimate kinase, SK; a 91.4 0.088 3E-06 51.2 2.8 20 352-371 6-25 (185)
351 2dby_A GTP-binding protein; GD 91.3 0.11 3.7E-06 57.3 3.7 18 354-371 4-21 (368)
352 3cf2_A TER ATPase, transitiona 91.2 0.3 1E-05 59.1 7.7 100 352-475 239-351 (806)
353 1z6t_A APAF-1, apoptotic prote 91.2 0.89 3E-05 52.6 11.6 115 351-477 147-270 (591)
354 1qf9_A UMP/CMP kinase, protein 91.1 0.1 3.5E-06 50.7 2.9 20 352-371 7-26 (194)
355 2pbr_A DTMP kinase, thymidylat 90.8 0.11 3.7E-06 50.7 2.8 19 353-371 2-20 (195)
356 2qtf_A Protein HFLX, GTP-bindi 90.8 0.094 3.2E-06 57.8 2.6 22 350-371 178-199 (364)
357 3fb4_A Adenylate kinase; psych 90.8 0.11 3.7E-06 52.0 2.8 19 353-371 2-20 (216)
358 1e6c_A Shikimate kinase; phosp 90.6 0.097 3.3E-06 50.2 2.2 20 352-371 3-22 (173)
359 3zvl_A Bifunctional polynucleo 90.5 0.55 1.9E-05 52.5 8.6 20 352-371 259-278 (416)
360 3a4m_A L-seryl-tRNA(SEC) kinas 90.5 0.13 4.4E-06 53.6 3.2 20 352-371 5-24 (260)
361 2pt5_A Shikimate kinase, SK; a 90.4 0.12 4.2E-06 49.3 2.8 19 353-371 2-20 (168)
362 2bwj_A Adenylate kinase 5; pho 90.3 0.12 4.2E-06 50.6 2.7 23 348-371 10-32 (199)
363 1ukz_A Uridylate kinase; trans 90.3 0.13 4.6E-06 50.8 3.0 20 352-371 16-35 (203)
364 3dl0_A Adenylate kinase; phosp 90.3 0.13 4.3E-06 51.6 2.8 19 353-371 2-20 (216)
365 1a7j_A Phosphoribulokinase; tr 90.2 0.098 3.4E-06 55.7 2.1 21 352-372 6-26 (290)
366 1m2o_B GTP-binding protein SAR 90.2 0.13 4.6E-06 50.3 2.9 28 342-371 16-43 (190)
367 2gno_A DNA polymerase III, gam 90.2 0.66 2.2E-05 49.7 8.5 20 352-371 19-38 (305)
368 1zd8_A GTP:AMP phosphotransfer 90.2 0.13 4.5E-06 52.1 2.9 20 352-371 8-27 (227)
369 3k53_A Ferrous iron transport 90.1 0.12 4.1E-06 54.0 2.6 20 352-371 4-23 (271)
370 3e2i_A Thymidine kinase; Zn-bi 90.1 0.77 2.6E-05 46.8 8.4 110 348-475 26-139 (219)
371 3nbx_X ATPase RAVA; AAA+ ATPas 90.1 0.31 1.1E-05 55.9 6.2 22 352-373 42-63 (500)
372 1f6b_A SAR1; gtpases, N-termin 90.1 0.089 3E-06 52.0 1.4 28 342-371 18-45 (198)
373 1mky_A Probable GTP-binding pr 90.0 0.13 4.3E-06 58.0 2.7 20 352-371 181-200 (439)
374 3dz8_A RAS-related protein RAB 89.8 0.057 1.9E-06 52.7 -0.2 19 353-371 25-43 (191)
375 2xb4_A Adenylate kinase; ATP-b 89.8 0.14 4.9E-06 51.8 2.8 19 353-371 2-20 (223)
376 1r6b_X CLPA protein; AAA+, N-t 89.7 1.1 3.9E-05 53.7 11.0 21 353-373 490-510 (758)
377 4ag6_A VIRB4 ATPase, type IV s 89.6 0.13 4.6E-06 56.7 2.6 20 352-371 36-55 (392)
378 1zak_A Adenylate kinase; ATP:A 89.6 0.14 4.8E-06 51.6 2.5 20 352-371 6-25 (222)
379 1a5t_A Delta prime, HOLB; zinc 89.6 1.9 6.3E-05 46.4 11.6 115 352-475 25-149 (334)
380 3lxw_A GTPase IMAP family memb 89.6 0.12 4.3E-06 53.3 2.1 20 352-371 22-41 (247)
381 1aky_A Adenylate kinase; ATP:A 89.6 0.17 5.7E-06 51.0 3.0 20 352-371 5-24 (220)
382 2cdn_A Adenylate kinase; phosp 89.5 0.17 6E-06 50.0 3.1 20 352-371 21-40 (201)
383 2grj_A Dephospho-COA kinase; T 89.3 0.17 5.8E-06 50.5 2.8 21 351-371 12-32 (192)
384 1moz_A ARL1, ADP-ribosylation 89.1 0.13 4.6E-06 49.2 1.9 20 352-371 19-38 (183)
385 2ged_A SR-beta, signal recogni 89.1 0.18 6.1E-06 49.0 2.8 20 352-371 49-68 (193)
386 1uj2_A Uridine-cytidine kinase 89.1 0.17 6E-06 52.2 2.8 20 352-371 23-42 (252)
387 1fzq_A ADP-ribosylation factor 89.1 0.18 6.2E-06 48.8 2.8 20 352-371 17-36 (181)
388 2f6r_A COA synthase, bifunctio 88.9 0.17 5.9E-06 53.4 2.7 22 351-372 75-96 (281)
389 1zuh_A Shikimate kinase; alpha 88.9 0.19 6.5E-06 48.1 2.8 20 352-371 8-27 (168)
390 1r6b_X CLPA protein; AAA+, N-t 88.8 0.12 4.1E-06 62.2 1.6 21 352-372 208-228 (758)
391 1ltq_A Polynucleotide kinase; 88.8 0.19 6.6E-06 53.0 3.0 20 352-371 3-22 (301)
392 1z2a_A RAS-related protein RAB 88.8 0.21 7E-06 46.9 2.9 19 353-371 7-25 (168)
393 3tw8_B RAS-related protein RAB 88.7 0.24 8.1E-06 47.1 3.3 19 353-371 11-29 (181)
394 1e4v_A Adenylate kinase; trans 88.5 0.2 7E-06 50.1 2.8 19 353-371 2-20 (214)
395 2iyv_A Shikimate kinase, SK; t 88.5 0.2 6.7E-06 48.7 2.6 20 352-371 3-22 (184)
396 3sfz_A APAF-1, apoptotic pepti 88.3 4 0.00014 51.1 15.1 114 350-477 146-270 (1249)
397 4dcu_A GTP-binding protein ENG 88.2 0.38 1.3E-05 54.3 5.1 20 352-371 24-43 (456)
398 2yc2_C IFT27, small RAB-relate 88.1 0.21 7.1E-06 48.9 2.6 20 352-371 21-40 (208)
399 2dyk_A GTP-binding protein; GT 88.1 0.25 8.5E-06 46.1 3.0 19 353-371 3-21 (161)
400 1z08_A RAS-related protein RAB 88.1 0.25 8.4E-06 46.5 3.0 19 353-371 8-26 (170)
401 2ce2_X GTPase HRAS; signaling 88.1 0.21 7.3E-06 46.4 2.5 19 353-371 5-23 (166)
402 1ek0_A Protein (GTP-binding pr 88.1 0.24 8.2E-06 46.4 2.8 19 353-371 5-23 (170)
403 4edh_A DTMP kinase, thymidylat 88.1 0.26 8.8E-06 50.0 3.2 22 349-371 5-26 (213)
404 3q72_A GTP-binding protein RAD 88.1 0.22 7.6E-06 46.8 2.6 19 353-371 4-22 (166)
405 1z0j_A RAB-22, RAS-related pro 88.0 0.24 8.2E-06 46.5 2.8 19 353-371 8-26 (170)
406 2erx_A GTP-binding protein DI- 88.0 0.28 9.5E-06 46.1 3.3 19 353-371 5-23 (172)
407 3tlx_A Adenylate kinase 2; str 88.0 0.26 8.8E-06 50.8 3.2 22 349-371 28-49 (243)
408 1jal_A YCHF protein; nucleotid 87.7 0.44 1.5E-05 52.4 5.0 19 353-371 4-22 (363)
409 2orw_A Thymidine kinase; TMTK, 87.7 0.26 9E-06 48.6 3.0 21 350-371 3-23 (184)
410 1kao_A RAP2A; GTP-binding prot 87.7 0.24 8.2E-06 46.2 2.6 19 353-371 5-23 (167)
411 1u8z_A RAS-related protein RAL 87.7 0.24 8.3E-06 46.2 2.6 19 353-371 6-24 (168)
412 1ky3_A GTP-binding protein YPT 87.5 0.24 8.4E-06 47.0 2.6 20 352-371 9-28 (182)
413 2lkc_A Translation initiation 87.4 0.27 9.3E-06 46.7 2.8 20 352-371 9-28 (178)
414 3v9p_A DTMP kinase, thymidylat 87.3 0.24 8.4E-06 50.8 2.6 23 348-371 23-45 (227)
415 3pxi_A Negative regulator of g 87.3 1.6 5.3E-05 52.6 10.0 22 353-374 523-544 (758)
416 1c1y_A RAS-related protein RAP 87.3 0.26 8.9E-06 46.1 2.6 19 353-371 5-23 (167)
417 1wms_A RAB-9, RAB9, RAS-relate 87.3 0.26 8.8E-06 46.9 2.6 19 353-371 9-27 (177)
418 3q85_A GTP-binding protein REM 87.3 0.26 8.9E-06 46.4 2.6 19 353-371 4-22 (169)
419 1g16_A RAS-related protein SEC 87.3 0.26 8.8E-06 46.3 2.5 19 353-371 5-23 (170)
420 2nzj_A GTP-binding protein REM 87.1 0.27 9.2E-06 46.5 2.6 19 353-371 6-24 (175)
421 1svi_A GTP-binding protein YSX 87.0 0.28 9.5E-06 47.6 2.7 20 352-371 24-43 (195)
422 3b1v_A Ferrous iron uptake tra 87.0 0.27 9.2E-06 51.8 2.7 20 352-371 4-23 (272)
423 3pqc_A Probable GTP-binding pr 87.0 0.28 9.6E-06 47.3 2.7 20 352-371 24-43 (195)
424 1upt_A ARL1, ADP-ribosylation 87.0 0.27 9.4E-06 46.3 2.6 20 352-371 8-27 (171)
425 2xxa_A Signal recognition part 87.0 7.1 0.00024 43.8 14.5 22 351-372 100-121 (433)
426 3lv8_A DTMP kinase, thymidylat 86.9 0.3 1E-05 50.4 3.0 22 349-371 26-47 (236)
427 3umf_A Adenylate kinase; rossm 86.7 0.31 1.1E-05 49.6 2.9 25 346-371 25-49 (217)
428 3d3q_A TRNA delta(2)-isopenten 86.7 0.31 1.1E-05 53.1 3.0 21 352-372 8-28 (340)
429 2cxx_A Probable GTP-binding pr 86.6 0.28 9.7E-06 47.1 2.5 19 353-371 3-21 (190)
430 4tmk_A Protein (thymidylate ki 86.5 0.33 1.1E-05 49.3 2.9 21 350-371 3-23 (213)
431 3be4_A Adenylate kinase; malar 86.4 0.34 1.2E-05 48.7 2.9 20 352-371 6-25 (217)
432 2fn4_A P23, RAS-related protei 86.3 0.31 1E-05 46.3 2.5 20 352-371 10-29 (181)
433 1r2q_A RAS-related protein RAB 86.3 0.32 1.1E-05 45.5 2.6 19 353-371 8-26 (170)
434 2y8e_A RAB-protein 6, GH09086P 86.2 0.31 1.1E-05 46.1 2.5 19 353-371 16-34 (179)
435 4dsu_A GTPase KRAS, isoform 2B 86.2 0.32 1.1E-05 46.6 2.6 19 353-371 6-24 (189)
436 3clv_A RAB5 protein, putative; 86.1 0.36 1.2E-05 46.6 2.9 20 352-371 8-27 (208)
437 3exa_A TRNA delta(2)-isopenten 86.0 0.37 1.3E-05 51.9 3.2 20 352-371 4-23 (322)
438 3crm_A TRNA delta(2)-isopenten 86.0 0.34 1.2E-05 52.4 2.9 20 352-371 6-25 (323)
439 3ihw_A Centg3; RAS, centaurin, 86.0 0.32 1.1E-05 47.3 2.5 20 352-371 21-40 (184)
440 3t1o_A Gliding protein MGLA; G 86.0 0.26 8.9E-06 47.6 1.8 19 353-371 16-34 (198)
441 1r8s_A ADP-ribosylation factor 85.9 0.34 1.2E-05 45.3 2.6 18 354-371 3-20 (164)
442 2a9k_A RAS-related protein RAL 85.9 0.34 1.2E-05 46.3 2.6 20 352-371 19-38 (187)
443 3bc1_A RAS-related protein RAB 85.9 0.34 1.1E-05 46.5 2.6 19 353-371 13-31 (195)
444 2oil_A CATX-8, RAS-related pro 85.9 0.34 1.1E-05 47.1 2.6 19 353-371 27-45 (193)
445 2ocp_A DGK, deoxyguanosine kin 85.8 0.39 1.3E-05 49.0 3.1 20 352-371 3-22 (241)
446 1z0f_A RAB14, member RAS oncog 85.8 0.35 1.2E-05 45.8 2.6 20 352-371 16-35 (179)
447 2h92_A Cytidylate kinase; ross 85.7 0.3 1E-05 48.8 2.2 20 352-371 4-23 (219)
448 2bme_A RAB4A, RAS-related prot 85.7 0.34 1.2E-05 46.4 2.5 19 353-371 12-30 (186)
449 3cbq_A GTP-binding protein REM 85.6 0.4 1.4E-05 47.1 3.0 20 352-371 24-43 (195)
450 1nrj_B SR-beta, signal recogni 85.5 0.38 1.3E-05 47.7 2.8 20 352-371 13-32 (218)
451 1m7b_A RND3/RHOE small GTP-bin 85.4 0.36 1.2E-05 46.6 2.5 19 353-371 9-27 (184)
452 2hxs_A RAB-26, RAS-related pro 85.4 0.37 1.3E-05 45.8 2.6 19 353-371 8-26 (178)
453 3kkq_A RAS-related protein M-R 85.4 0.37 1.3E-05 46.1 2.6 20 352-371 19-38 (183)
454 3con_A GTPase NRAS; structural 85.4 0.37 1.3E-05 46.5 2.6 19 353-371 23-41 (190)
455 3p32_A Probable GTPase RV1496/ 85.4 1.8 6.1E-05 47.1 8.3 21 352-372 80-100 (355)
456 3foz_A TRNA delta(2)-isopenten 85.3 0.4 1.4E-05 51.6 3.0 20 352-371 11-30 (316)
457 2efe_B Small GTP-binding prote 85.1 0.39 1.3E-05 45.7 2.5 19 353-371 14-32 (181)
458 2g6b_A RAS-related protein RAB 85.1 0.39 1.3E-05 45.6 2.6 20 352-371 11-30 (180)
459 2wsm_A Hydrogenase expression/ 85.0 0.42 1.4E-05 47.6 2.9 20 352-371 31-50 (221)
460 2j37_W Signal recognition part 85.0 7.6 0.00026 44.4 13.6 21 352-372 102-122 (504)
461 2bov_A RAla, RAS-related prote 84.9 0.39 1.4E-05 46.8 2.6 20 352-371 15-34 (206)
462 2ew1_A RAS-related protein RAB 84.8 0.42 1.4E-05 47.4 2.7 19 353-371 28-46 (201)
463 3ld9_A DTMP kinase, thymidylat 84.8 0.49 1.7E-05 48.4 3.3 23 348-371 19-41 (223)
464 3t5g_A GTP-binding protein RHE 84.8 0.4 1.4E-05 45.8 2.5 20 352-371 7-26 (181)
465 3tkl_A RAS-related protein RAB 84.7 0.41 1.4E-05 46.3 2.6 19 353-371 18-36 (196)
466 1mh1_A RAC1; GTP-binding, GTPa 84.6 0.42 1.4E-05 45.6 2.6 19 353-371 7-25 (186)
467 1ksh_A ARF-like protein 2; sma 84.6 0.42 1.4E-05 45.9 2.6 20 352-371 19-38 (186)
468 1vg8_A RAS-related protein RAB 84.6 0.42 1.4E-05 46.8 2.6 20 352-371 9-28 (207)
469 2qmh_A HPR kinase/phosphorylas 84.4 0.53 1.8E-05 47.5 3.2 22 349-371 33-54 (205)
470 1ak2_A Adenylate kinase isoenz 84.3 0.49 1.7E-05 48.0 3.1 21 352-372 17-37 (233)
471 2aka_B Dynamin-1; fusion prote 84.3 5.3 0.00018 41.5 11.1 20 352-371 27-46 (299)
472 2gf0_A GTP-binding protein DI- 84.2 0.44 1.5E-05 46.2 2.5 20 352-371 9-28 (199)
473 3llu_A RAS-related GTP-binding 84.2 0.42 1.4E-05 46.8 2.4 20 352-371 21-40 (196)
474 2fg5_A RAB-22B, RAS-related pr 84.1 0.44 1.5E-05 46.4 2.5 19 353-371 25-43 (192)
475 1p5z_B DCK, deoxycytidine kina 84.0 0.45 1.5E-05 49.3 2.7 23 348-371 22-44 (263)
476 2o52_A RAS-related protein RAB 84.0 0.45 1.5E-05 46.8 2.5 19 353-371 27-45 (200)
477 3tmk_A Thymidylate kinase; pho 84.0 0.5 1.7E-05 48.1 2.9 22 349-371 4-25 (216)
478 2gf9_A RAS-related protein RAB 84.0 0.46 1.6E-05 45.9 2.6 19 353-371 24-42 (189)
479 1nz9_A Transcription antitermi 83.8 2.7 9.1E-05 33.3 6.5 34 669-703 4-40 (58)
480 2il1_A RAB12; G-protein, GDP, 83.7 0.48 1.6E-05 46.2 2.6 19 353-371 28-46 (192)
481 3sr0_A Adenylate kinase; phosp 83.7 0.51 1.8E-05 47.5 2.8 19 353-371 2-20 (206)
482 2a5j_A RAS-related protein RAB 83.6 0.49 1.7E-05 45.9 2.6 19 353-371 23-41 (191)
483 2h57_A ADP-ribosylation factor 83.5 0.44 1.5E-05 46.2 2.2 20 352-371 22-41 (190)
484 1vt4_I APAF-1 related killer D 83.5 4.1 0.00014 50.8 11.0 114 351-477 150-278 (1221)
485 1zj6_A ADP-ribosylation factor 83.5 0.49 1.7E-05 45.7 2.5 20 352-371 17-36 (187)
486 3bwd_D RAC-like GTP-binding pr 83.5 0.51 1.7E-05 44.9 2.6 19 353-371 10-28 (182)
487 2hf9_A Probable hydrogenase ni 83.4 0.53 1.8E-05 47.0 2.8 20 352-371 39-58 (226)
488 1x3s_A RAS-related protein RAB 83.2 0.52 1.8E-05 45.4 2.6 20 352-371 16-35 (195)
489 1z06_A RAS-related protein RAB 83.1 0.52 1.8E-05 45.5 2.6 20 352-371 21-40 (189)
490 3oes_A GTPase rhebl1; small GT 83.1 0.52 1.8E-05 46.2 2.5 20 352-371 25-44 (201)
491 1zd9_A ADP-ribosylation factor 83.0 0.53 1.8E-05 45.6 2.6 20 352-371 23-42 (188)
492 1zbd_A Rabphilin-3A; G protein 83.0 0.53 1.8E-05 46.0 2.6 19 353-371 10-28 (203)
493 3reg_A RHO-like small GTPase; 83.0 0.54 1.8E-05 45.7 2.6 20 352-371 24-43 (194)
494 2bcg_Y Protein YP2, GTP-bindin 82.9 0.53 1.8E-05 46.2 2.5 19 353-371 10-28 (206)
495 3iby_A Ferrous iron transport 82.9 0.54 1.9E-05 48.9 2.7 19 353-371 3-21 (256)
496 2b6h_A ADP-ribosylation factor 82.8 0.54 1.8E-05 45.9 2.5 20 352-371 30-49 (192)
497 4bas_A ADP-ribosylation factor 82.8 0.58 2E-05 45.3 2.8 20 352-371 18-37 (199)
498 2atv_A RERG, RAS-like estrogen 82.8 0.54 1.9E-05 45.8 2.6 20 352-371 29-48 (196)
499 2h17_A ADP-ribosylation factor 82.8 0.49 1.7E-05 45.4 2.2 20 352-371 22-41 (181)
500 3cph_A RAS-related protein SEC 82.8 0.6 2.1E-05 45.8 2.9 20 352-371 21-40 (213)
No 1
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=100.00 E-value=5.1e-68 Score=641.79 Aligned_cols=481 Identities=21% Similarity=0.286 Sum_probs=416.6
Q ss_pred CchHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 003258 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWK 80 (835)
Q Consensus 1 mG~~~l~~~~l~p~~~~~~i~~~l~~~~e~~~~~~~~~~~l~~~~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~l~~ 80 (835)
||+|+|++|+++|+.|.++|+++|+.|+++..+......+|.+++|+++++.|+..|. +++.||..++.+|..+..++.
T Consensus 302 ~G~RlL~~wl~~Pl~d~~~I~~R~~~v~~~~~~~~~l~~~L~~~~Dler~l~r~~~~~-~~~~dl~~l~~~l~~~~~l~~ 380 (800)
T 1wb9_A 302 MGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPVLRQVGDLERILARLALRT-ARPRDLARMRHAFQQLPELRA 380 (800)
T ss_dssp HHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGGGHHHHHHHHHTTCSHHHHHHHHHHTC-CCHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999998833444568899999999999999885 699999999999999999999
Q ss_pred HHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhccC-------CCcccCCcCHHHHHHHHHHHHHHHHHHHHH
Q 003258 81 KLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDRASEDLELIRAERKRNMENLDSLL 153 (835)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~i~~~id~~-------~~~i~d~aS~~L~~lR~~~~~~~~~l~~~l 153 (835)
++... ..+.|..+...+..++++.+.|.++|+++ ++.|+|++|++|++||+.++..++++.+++
T Consensus 381 ~l~~~---------~~~~L~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~I~~g~~~eLd~lr~~~~~~~~~l~~~~ 451 (800)
T 1wb9_A 381 QLETV---------DSAPVQALREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLE 451 (800)
T ss_dssp HHHSC---------CCHHHHHHHHHHCCCHHHHHHHHHHBCSSCCSCSTTCCCBCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc---------CcHHHHHHHHhcccHHHHHHHHHHHhCcCchhhhhcCCeeCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 98632 24667788888889999999999999976 357999999999999999998888888876
Q ss_pred HHHHHHHHHhcCCCCcceeeccC---cEEEEEecccccCCCCcEEEEEccCCcEEEeccchhhhhhHHHHHHhHHHHHHH
Q 003258 154 KKVAAQIFQAGGIDKPLITKRRS---RMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEE 230 (835)
Q Consensus 154 ~~~~~~~~~~~~~~~~~i~~r~~---r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~iep~~~v~lnn~~~~l~~~e~~ee 230 (835)
.... ...++. .++++.+ +|+|+|+..+...+|+||+|++|.+|+++|++|. +.++++++.++..++..++
T Consensus 452 ~~~~----~~~~~~--~l~i~~~~~~gy~i~V~~~~~~~vp~~~i~~~s~~~~~~f~tp~-l~~l~~~i~~~~~~~~~~e 524 (800)
T 1wb9_A 452 VRER----ERTGLD--TLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPE-LKEYEDKVLTSKGKALALE 524 (800)
T ss_dssp HHHH----HHHTCT--TCEEEEETTTEEEEEEEHHHHTTSCTTCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHhCCC--ceEEEecCcceEEEEEeccccccCCcceEEeeeccCCCEEeCHH-HHHHHHHHHHHHHHHHHHH
Confidence 6543 223333 3455554 5999999999999999999999999999999997 9999999999998899999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCCCcceeeEccccCCcccccccccccc
Q 003258 231 TAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSA 310 (835)
Q Consensus 231 ~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~~~~ 310 (835)
.+|+.+|.+.+..+.+.+..+.+.+++||+++|+|.+|.+++||+|.++++. .|.++++|||+++.. ..
T Consensus 525 ~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~i~i~~~rHP~le~~-~~---- 593 (800)
T 1wb9_A 525 KQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKP------GIRITEGRHPVVEQV-LN---- 593 (800)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCEECSSS------CEEEEEECCTTHHHH-CS----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccEECCCC------CEEEEeccccEEEcc-CC----
Confidence 9999999999999999999999999999999999999999999999998754 699999999999421 10
Q ss_pred ccCCCCCCCCCCCCCeEEEeeeeeecCCceeccceee-cCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC
Q 003258 311 ASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKV-ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (835)
Q Consensus 311 ~~~~~~~~~~~~g~~~l~~~~ls~~y~~~~v~isl~l-~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~ 389 (835)
+.++++++.+ ++| ++++|+||||||||||||+++.+.+|+++|.++|+..
T Consensus 594 ---------------------------~~~vlndisl~~~g-~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~- 644 (800)
T 1wb9_A 594 ---------------------------EPFIANPLNLSPQR-RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQK- 644 (800)
T ss_dssp ---------------------------SCCCCEEEEECSSS-CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSE-
T ss_pred ---------------------------CceeeecccccCCC-cEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhc-
Confidence 1245444444 466 8999999999999999999999999999999999875
Q ss_pred CCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEE
Q 003258 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAV 468 (835)
Q Consensus 390 ~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~vi 468 (835)
..+++++++|.++|..+++..+.|+||++|+++..++..+++|+||||||||+|||+.++.++++++++++.+ .|+++|
T Consensus 645 ~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl 724 (800)
T 1wb9_A 645 VEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTL 724 (800)
T ss_dssp EEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEE
Confidence 6788888899999999999999999999999999999999999999999999999999999998889999987 489999
Q ss_pred EEecchhHHhhhcccccccCCceeeccc--ccccchhcccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHhh
Q 003258 469 VTTHYADLSCLKDKDTRFENAATEFSLE--TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 538 (835)
Q Consensus 469 itTH~~el~~~~~~~~~~~n~~v~~~~~--~l~~~Y~l~~g~~~~s~a~~ia~~~g~~~~ii~~A~~~~~~~ 538 (835)
++|||+++..++++...+.|++|.++.. .+.|+|++..|.+++|||+++|+++|+|++|+++|++.+..+
T Consensus 725 ~~TH~~el~~l~d~~~~v~n~~~~~~~~~~~l~~~ykl~~G~~~~S~gi~vA~~~GlP~~vi~rA~~~l~~l 796 (800)
T 1wb9_A 725 FATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLREL 796 (800)
T ss_dssp EECSCGGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHhhhhhceEEEEEEEEEcCCcEEEEEEEEECCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999989999999999999998754 599999999999999999999999999999999999988653
No 2
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=100.00 E-value=1.8e-61 Score=581.71 Aligned_cols=465 Identities=22% Similarity=0.301 Sum_probs=400.7
Q ss_pred CchHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH--H-hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 003258 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAM--M-QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77 (835)
Q Consensus 1 mG~~~l~~~~l~p~~~~~~i~~~l~~~~e~~~~--~-~~~~~~l~~~~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~~ 77 (835)
||+|+|++|+++|+.|.++|+++++.|+++.+. + .....+|.+++|+++++.|+..|. +++.||..++.+|..+..
T Consensus 283 ~G~RlL~~wl~~Pl~d~~~I~~R~~~V~~l~~~~~~~~~l~~~L~~~~Dler~l~r~~~~~-~~~~dl~~l~~~l~~~~~ 361 (765)
T 1ewq_A 283 PGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATRLELGR-ASPKDLGALRRSLQILPE 361 (765)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999873 2 344557999999999999999885 699999999999999999
Q ss_pred HHHHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhccC-------CCcccCCcCHHHHHHHHHHHHHHHHHH
Q 003258 78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDRASEDLELIRAERKRNMENLD 150 (835)
Q Consensus 78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~i~~~id~~-------~~~i~d~aS~~L~~lR~~~~~~~~~l~ 150 (835)
++.++. +...+..++++.+.|.++|+++ ++.|+|++|++|+++|+.++...+++.
T Consensus 362 l~~~l~------------------l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~ 423 (765)
T 1ewq_A 362 LRALLG------------------EEVGLPDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFL 423 (765)
T ss_dssp HHHHHC------------------TTSCCCCCHHHHHHHHHHBCSSCCSCTTSSCCBCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH------------------HHhccccHHHHHHHHHHHhcccchhhhccCCccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 888763 1234567888999999999865 357999999999999999888888887
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccC---cEEEEEecccccCCCCcEEEEEccCCcEEEeccchhhhhhHHHHHHhHHHH
Q 003258 151 SLLKKVAAQIFQAGGIDKPLITKRRS---RMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEI 227 (835)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~i~~r~~---r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~iep~~~v~lnn~~~~l~~~e~ 227 (835)
++..... ...++.. ++++.+ +|+|+|+..+...+|+.|+|++|.+|+++|++|. +.++++++..+..++.
T Consensus 424 ~~~~~~~----~~~~~~~--l~i~~~~~~gy~i~v~~~~~~~vp~~~i~~~s~~~~~rf~tp~-l~el~~~i~~~~~~~~ 496 (765)
T 1ewq_A 424 ELEERER----ERTGIPT--LKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPE-MKEKEREVYRLEALIR 496 (765)
T ss_dssp HHHHHHH----HHHCCTT--CEEEEETTTEEEEEEEGGGGGGSCTTCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHcCCCc--eEEEeccceeEEEEeehHhhhcCCcceEEEEeccCCcEEECHH-HHHHHHHHHHHHHHHH
Confidence 7765533 3334433 444444 5999999999999997799999999999999997 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCCCcceeeEccccCCccccccccc
Q 003258 228 AEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRS 307 (835)
Q Consensus 228 ~ee~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~ 307 (835)
.++.+|+.+|.+.+..+.+.+..+.+.++.||+++|+|.+|..++||+|.+ . + .|.++++|||+++. .
T Consensus 497 ~~e~~i~~~L~~~i~~~~~~l~~~~~~la~LD~l~s~a~~a~~~~~~~P~~-~-~------~i~i~~~rHP~le~---~- 564 (765)
T 1ewq_A 497 RREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRF-G-D------RLQIRAGRHPVVER---R- 564 (765)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBCCEE-S-S------SEEEEEECCTTGGG---T-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCceeecc-C-C------cEEEEEeECceEcc---C-
Confidence 999999999999999999999999999999999999999999999999999 3 2 59999999999841 0
Q ss_pred cccccCCCCCCCCCCCCCeEEEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCC
Q 003258 308 LSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAK 387 (835)
Q Consensus 308 ~~~~~~~~~~~~~~~g~~~l~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~ 387 (835)
+.++++++.+. | ++++|+||||||||||||+++.+.+|+++|.++|+.
T Consensus 565 ------------------------------~~~vl~disl~-g-~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~ 612 (765)
T 1ewq_A 565 ------------------------------TEFVPNDLEMA-H-ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAE 612 (765)
T ss_dssp ------------------------------SCCCCEEEEES-S-CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSS
T ss_pred ------------------------------CceEeeeccCC-C-cEEEEECCCCCChHHHHHHHHhhhhhcccCceeehh
Confidence 12566666666 7 999999999999999999999998999999999986
Q ss_pred CCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEE
Q 003258 388 NHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA 467 (835)
Q Consensus 388 ~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~v 467 (835)
. ..+++++++|.+++..+++....|+|+.++.+++.++..+++|+||||||||+||++.++.++++++++++.+.|+++
T Consensus 613 ~-~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~v 691 (765)
T 1ewq_A 613 E-AHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYT 691 (765)
T ss_dssp E-EEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred c-cceeeHHHhhccCCHHHHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEE
Confidence 4 678888888889999999988888888777777777778999999999999999999999888888999988888999
Q ss_pred EEEecchhHHhhhcccccccCCceeeccc--ccccchhcccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHhh
Q 003258 468 VVTTHYADLSCLKDKDTRFENAATEFSLE--TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 538 (835)
Q Consensus 468 iitTH~~el~~~~~~~~~~~n~~v~~~~~--~l~~~Y~l~~g~~~~s~a~~ia~~~g~~~~ii~~A~~~~~~~ 538 (835)
|++|||+++..++ ...+.|++|.++.. .+.|+|++..|.+++|||+++|+++|+|++|+++|++.+..+
T Consensus 692 l~~TH~~~l~~~~--~~~v~n~~~~~~~~~~~l~f~ykl~~G~~~~Sygi~vA~~aGlP~~VI~rA~~~l~~l 762 (765)
T 1ewq_A 692 LFATHYFELTALG--LPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAM 762 (765)
T ss_dssp EEECCCHHHHTCC--CTTEEEEEEEEECCSSSCEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHhh--hhcceEEEEEEEEcCCeEEEEEEEEECCCCCchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999988887 67789999988754 588999999999999999999999999999999999988754
No 3
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=100.00 E-value=2.3e-61 Score=588.22 Aligned_cols=489 Identities=21% Similarity=0.265 Sum_probs=378.7
Q ss_pred CchHHHhhcCCCCCCCHHHHHHHHHHHHHHHH----HHhcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 003258 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA----MMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN 76 (835)
Q Consensus 1 mG~~~l~~~~l~p~~~~~~i~~~l~~~~e~~~----~~~~~~~~l~~~~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~ 76 (835)
||+|+|++|+++|+.|.++|+.||+.++++.. +...-.-.|.+++|+++++.|+..|.. +|.||..+..+|..+.
T Consensus 355 mG~RlLr~Wl~~PL~d~~~I~~R~daVe~l~~~~~~~~~~l~~~L~~i~DleRll~ri~~~~~-~~~dl~~l~~~l~~l~ 433 (918)
T 3thx_B 355 FGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKC-STQEFFLIVKTLYHLK 433 (918)
T ss_dssp HHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCCCTHHHHHHHTTTTCCCHHHHHHHHHTTCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHccCccHHHHHHHhccCcC-CHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998752 122222368999999999999998885 9999999999998876
Q ss_pred -HHHHHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhccC-------CCcccCC-cCHHHHHHHHHHHHHHH
Q 003258 77 -NVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDR-ASEDLELIRAERKRNME 147 (835)
Q Consensus 77 -~l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~i~~~id~~-------~~~i~d~-aS~~L~~lR~~~~~~~~ 147 (835)
.++..+..... ....+.|..++..++.+......+...|+++ ++.+.+. ..|+|+.+|+.++....
T Consensus 434 ~~l~~~l~~~~~-----~~~~~lL~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 508 (918)
T 3thx_B 434 SEFQAIIPAVNS-----HIQSDLLRTVILEIPELLSPVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVID 508 (918)
T ss_dssp HHHHHHHHHHHH-----TCCCHHHHHHHTHHHHHTGGGHHHHTTSCHHHHHHTCSTTSCSCGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh-----hccCHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhcCCccccccccccCHHHHHHHHHHHHHHH
Confidence 55555432211 0012334444332221111112223333321 1123332 36899999988888777
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcceeeccCcEEEEEecccccCCCCcEEEEEccCCcEEEeccchhhhhhHHHHHHhHHHH
Q 003258 148 NLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEI 227 (835)
Q Consensus 148 ~l~~~l~~~~~~~~~~~~~~~~~i~~r~~r~vi~v~~~~~~~~~~g~v~~~s~sg~t~~iep~~~v~lnn~~~~l~~~e~ 227 (835)
.+++.+.+.... +. ...-.+++++++||+|+|+..+...+|+.|+..++..++.+|++|. ++++++++..++.+..
T Consensus 509 ~~~~~l~~~~~~-i~--~~~~~~~~~~g~~y~iev~~~~~~~vp~~~~~~~~~~~~~rf~tpe-l~~~~~~~~~~~e~~~ 584 (918)
T 3thx_B 509 EIRMHLQEIRKI-LK--NPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPF-IVENYRHLNQLREQLV 584 (918)
T ss_dssp HHHHHHHHHHHH-HT--CTTCCCEEETTEEEEEEEETTSGGGSCSSCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hC--cccceeEeecCCEEEEEEcHHHHhhCCCeEEEEEecCCeeEEECHH-HHHHHHHHHHHHHHHH
Confidence 777777654322 22 1223577888889999999999999995555555444445788884 8899998887776666
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCCCcceeeEccccCCccccccccc
Q 003258 228 AEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRS 307 (835)
Q Consensus 228 ~ee~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~ 307 (835)
..+.+++.++...+..+...+..+.+.++.||+++|+|.+|..++||+|.+++.. .|.++++|||+++. .+..
T Consensus 585 ~~e~~~~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~i~i~~~rHP~le~-~~~~ 657 (918)
T 3thx_B 585 LDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEER------KIVIKNGRHPVIDV-LLGE 657 (918)
T ss_dssp HHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTSSSCBCCEEESSC------EEEEEEECCHHHHH-HTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcccCCC------cEEEEeccchhhhh-hhcc
Confidence 6777888889999999999999999999999999999999999999999998864 79999999999842 1110
Q ss_pred cccccCCCCCCCCCCCCCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeec
Q 003258 308 LSAASSNSNPLKSDVENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLP 385 (835)
Q Consensus 308 ~~~~~~~~~~~~~~~g~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP 385 (835)
++.+| +++|.+++| ++++|+||||||||||||++|++.+|++.|+++|
T Consensus 658 -----------------------------~~~~V~ndvsl~~~~g-~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vp 707 (918)
T 3thx_B 658 -----------------------------QDQYVPNNTDLSEDSE-RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVP 707 (918)
T ss_dssp -----------------------------CSSSCCEEEEECTTSC-CEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBS
T ss_pred -----------------------------CCceecccccccCCCC-eEEEEECCCCCchHHHHHHHHHHHHHhhcCcccc
Confidence 01245 556666678 9999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CC
Q 003258 386 AKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RV 464 (835)
Q Consensus 386 ~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~ 464 (835)
+.. ..+++++++|.++|..+++.+++|+||+||++++.++..+++|+||||||||+||||.++.++++++++++.+ .|
T Consensus 708 a~~-~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g 786 (918)
T 3thx_B 708 AEE-ATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVK 786 (918)
T ss_dssp SSE-EEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred chh-hhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 986 6788888999999999999999999999999988888789999999999999999999999999889999865 68
Q ss_pred cEEEEEecchhHHhhhccccc-ccCCceeec----------------ccccccchhcccCCCCCchHHHHHHHcCCCHHH
Q 003258 465 GLAVVTTHYADLSCLKDKDTR-FENAATEFS----------------LETLRPTYRILWGSTGDSNALNIAKSIGFDRKI 527 (835)
Q Consensus 465 ~~viitTH~~el~~~~~~~~~-~~n~~v~~~----------------~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~~~~i 527 (835)
+++|++|||+++..++++... +.|++|.+. .+++.|+|++..|.+++|||+++|+++|+|++|
T Consensus 787 ~tvl~vTH~~el~~l~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~l~flykl~~G~~~~S~gi~vA~~aGlp~~v 866 (918)
T 3thx_B 787 SLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEI 866 (918)
T ss_dssp CEEEEECSCGGGGGHHHHTTTTEEEEEEEEECC-----------------CCEEEEEEESCCCTTTTHHHHTTTTCCHHH
T ss_pred CeEEEEeCcHHHHHHHhhcccceEEEEEEEEEcccccccccccccCCCCceeEeeeeccCCCCCcHHHHHHHHhCcCHHH
Confidence 999999999999999998875 899999873 246999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 003258 528 IQRAQKLVER 537 (835)
Q Consensus 528 i~~A~~~~~~ 537 (835)
+++|+..+..
T Consensus 867 i~rA~~~~~~ 876 (918)
T 3thx_B 867 LKKAAHKSKE 876 (918)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 4
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=100.00 E-value=9.7e-61 Score=584.40 Aligned_cols=496 Identities=18% Similarity=0.221 Sum_probs=397.7
Q ss_pred CchHHHhhcCCCCCCCHHHHHHHHHHHHHHHH---HHhcC-CCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 003258 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA---MMQSQ-PLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN 76 (835)
Q Consensus 1 mG~~~l~~~~l~p~~~~~~i~~~l~~~~e~~~---~~~~~-~~~l~~~~Di~~~l~r~~~g~~l~~~el~~i~~~l~~~~ 76 (835)
||+|+|++|+++|+.|.++|++||+.++++.+ +...- ...|++++|+++++.|+..|.. +++||..++.+|..+.
T Consensus 337 ~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~~L~~i~DleRl~~ri~~~~~-~~~dl~~l~~~l~~~~ 415 (934)
T 3thx_A 337 QGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAA-NLQDCYRLYQGINQLP 415 (934)
T ss_dssp HHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCHHHHHHHHTTTGGGCCCHHHHHHHHHTTCC-CHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHhhChHHHHHHHHHHhcCCCCHHHHHHHHhcCCC-CHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998875 22221 2248999999999999998885 8999999999999999
Q ss_pred HHHHHHHHhhhccCCcccccchHHHHHhcCCChHHHHHHHhhhhccC----C-CcccCCcCHHHHHHHHHHHHHHHHHHH
Q 003258 77 NVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK----L-LIILDRASEDLELIRAERKRNMENLDS 151 (835)
Q Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~i~~~id~~----~-~~i~d~aS~~L~~lR~~~~~~~~~l~~ 151 (835)
.++..+.............. .+..+...+..++.+.+.|.++|+++ + +.|++++|++|+++|+.+....+++.+
T Consensus 416 ~l~~~l~~~~~~~~~~l~~~-~~~~l~~~~~~l~~~~~~i~~~i~~~~~~~g~~~i~~g~~~~Ld~lr~~~~~~~~~l~~ 494 (934)
T 3thx_A 416 NVIQALEKHEGKHQKLLLAV-FVTPLTDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKMQS 494 (934)
T ss_dssp HHHHHHHHTCCSSSTTGGGG-THHHHHHHHHHHHHHHHHHHTTBCTTGGGTTCCCBCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccchHHHHH-HHHHHHHHHhhHHHHHHHHHHHhCcchhhcCCceeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99998865321000000000 01122222345678888899999865 3 579999999999999999988888888
Q ss_pred HHHHHHHHHHHhcCC---CCcceeeccC-cEEEEEecccccC--CCCcEEEEEccCCcEEEeccchhhhhhHHHHHHhHH
Q 003258 152 LLKKVAAQIFQAGGI---DKPLITKRRS-RMCVGIKASHKYL--LPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNS 225 (835)
Q Consensus 152 ~l~~~~~~~~~~~~~---~~~~i~~r~~-r~vi~v~~~~~~~--~~~g~v~~~s~sg~t~~iep~~~v~lnn~~~~l~~~ 225 (835)
++.+... ..++ ....+.+... +|+|.|+...... .|..|++.++..+..+|+.| ++.++++++..+..+
T Consensus 495 ~~~~~~~----~~~~~~~~~lk~~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~t~~~~~rf~t~-el~~l~~~~~~~~~~ 569 (934)
T 3thx_A 495 TLISAAR----DLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNS-KLTSLNEEYTKNKTE 569 (934)
T ss_dssp HHHHHHH----HSCCCBTTTBEEEECC--CEEEEECHHHHTTTTTCSSCEEEEEC--CEEEECT-THHHHHHHHTTTTHH
T ss_pred HHHHHHH----HhCCCccceEEEEEeccceEEEEEEechhhccCCCCCcEEEEcccCeEEEECH-HHHHHHHHHHHHHHH
Confidence 7766443 2344 2334444333 6888887533222 23445655556666777666 599999999888888
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCccccccCCCCCCCcceeeEccccCCccccc
Q 003258 226 EIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQW--MDGVCPILSSQSHVSFDSSINIEGIKHPLLLGS 303 (835)
Q Consensus 226 e~~ee~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~--~~~~~P~~~~~~~~~~~~~i~l~~~rHPll~~~ 303 (835)
+..++.+|+.+|.+.+..+.+.+..+.++++.||+++|+|.+|.. ++||+|.+++.+ +..|.++++|||+++..
T Consensus 570 ~~~~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~rP~~~~~~----~~~i~i~~~rHP~le~~ 645 (934)
T 3thx_A 570 YEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEKG----QGRIILKASRHACVEVQ 645 (934)
T ss_dssp HHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCBCCEEECTT----SCEEEEEEECCTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCeeccCC----CcceEeecCccchhhhc
Confidence 888999999999999999999999999999999999999999987 899999998732 12699999999999521
Q ss_pred cccccccccCCCCCCCCCCCCCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccc
Q 003258 304 SLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAG 381 (835)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~g~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G 381 (835)
. ++.+| +++|.++.| ++++|+||||||||||||++|++.+|+++|
T Consensus 646 -~-------------------------------~~~~v~ndisl~~~~g-~i~~ItGpNGsGKSTlLr~ial~~~~aq~G 692 (934)
T 3thx_A 646 -D-------------------------------EIAFIPNDVYFEKDKQ-MFHIITGPNMGGKSTYIRQTGVIVLMAQIG 692 (934)
T ss_dssp ----------------------------------CCCCCEEEEEETTTB-CEEEEECCTTSSHHHHHHHHHHHHHHHHHT
T ss_pred -C-------------------------------CceeecccceeecCCC-eEEEEECCCCCCHHHHHHHHHHHHHHHhcC
Confidence 0 01245 556666677 999999999999999999999999999999
Q ss_pred eeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHh
Q 003258 382 LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 461 (835)
Q Consensus 382 ~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~ 461 (835)
+|+|+.. ..++.++++|.++|..+++.+.+|+||++|++++.++..+++|+||||||||+||||.++.++++++++++.
T Consensus 693 ~~vpa~~-~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~ 771 (934)
T 3thx_A 693 CFVPCES-AEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIA 771 (934)
T ss_dssp CCBSEEE-EEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHH
T ss_pred Ccccccc-ccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999986 678888999999999999999999999999999999888999999999999999999999999999999998
Q ss_pred c-CCcEEEEEecchhHHhhhcccccccCCceee--cccccccchhcccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHhh
Q 003258 462 D-RVGLAVVTTHYADLSCLKDKDTRFENAATEF--SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 538 (835)
Q Consensus 462 ~-~~~~viitTH~~el~~~~~~~~~~~n~~v~~--~~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~~~~ii~~A~~~~~~~ 538 (835)
+ .|+++|++|||+++..++++.+.+.||++.+ +.+.+.++|++..|.++.|||+++|+.+|+|++|+++|++.+..+
T Consensus 772 ~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~~~y~l~~G~~~~S~gi~vA~~~glp~~vi~~A~~~~~~l 851 (934)
T 3thx_A 772 TKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALEL 851 (934)
T ss_dssp HTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEEEEEEEEESCCCCCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred hcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEEEEEEEeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 6 5899999999999999999999999999885 456899999999999999999999999999999999999999876
Q ss_pred chh
Q 003258 539 RPE 541 (835)
Q Consensus 539 ~~~ 541 (835)
+..
T Consensus 852 e~~ 854 (934)
T 3thx_A 852 EEF 854 (934)
T ss_dssp TTT
T ss_pred Hhc
Confidence 543
No 5
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=100.00 E-value=2.2e-60 Score=587.84 Aligned_cols=491 Identities=20% Similarity=0.260 Sum_probs=373.3
Q ss_pred CchHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH---HhcCCCCCCCCcCHHHHHHHHhc-CCC-----------------
Q 003258 1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAM---MQSQPLDLSTIEDIAGILNSAVS-GQL----------------- 59 (835)
Q Consensus 1 mG~~~l~~~~l~p~~~~~~i~~~l~~~~e~~~~---~~~~~~~l~~~~Di~~~l~r~~~-g~~----------------- 59 (835)
||+|+||+|+++|+.|.++|+.||+.+++++.- ...-.-.|++++|++|++.|+.. |..
T Consensus 431 mG~RLLr~WL~~PL~d~~~I~~RldaVe~l~~~~~~~~~l~~~L~~i~DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~ 510 (1022)
T 2o8b_B 431 FGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEET 510 (1022)
T ss_dssp HHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHH
T ss_pred hhHHHHHHHHhCccCCHHHHHHHHHHHHHHHhChHHHHHHHHHHhcCccHHHHHHHHHhcCCcccccccchhhhhhhhhh
Confidence 899999999999999999999999999988652 22212257899999999999976 441
Q ss_pred -CCHHHHHHHHHH---HHHHHHHHHHHHHhhhccCCcccccchHHHHHh--------cCCChHHHHHHHhhhhcc----C
Q 003258 60 -LSPSEICAVRRT---LRAVNNVWKKLTEAAELDGDSLQRYSPLLELLK--------NCNFLTELEEKIGFCIDC----K 123 (835)
Q Consensus 60 -l~~~el~~i~~~---l~~~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~--------~l~~~~~l~~~i~~~id~----~ 123 (835)
..+.++..+..+ +..+..+...+..... ....+.|..+.. .++.+.++...|.++||+ +
T Consensus 511 ~~~~~~l~~l~~~l~~l~~~~~i~~~l~~~~~-----~~~s~lL~~~~~~~~~~~~~~~~~l~~~~~~~~~~id~~~~~~ 585 (1022)
T 2o8b_B 511 TYSKKKIIDFLSALEGFKVMCKIIGIMEEVAD-----GFKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARK 585 (1022)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCCHHHHHHTSBTTTSSSSCBCCCHHHHHHHHTTSCHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhc-----ccCcHHHHHHHHhhccccccchHHHHHHHHHHHHHhCchhhhc
Confidence 124445555544 5666666666653211 001234455542 345677777888899985 1
Q ss_pred CCcc--cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CcceeeccCcEEEEEecccccC-CCCcEEEEEc
Q 003258 124 LLII--LDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGID-KPLITKRRSRMCVGIKASHKYL-LPDGIALNVS 199 (835)
Q Consensus 124 ~~~i--~d~aS~~L~~lR~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~i~~r~~r~vi~v~~~~~~~-~~~g~v~~~s 199 (835)
++.| ++++|++|+++|+.++..++++.+++.+.. ...++. ..+++++++||+|+|+..+... +|+.|++.++
T Consensus 586 ~g~i~~~~g~~~~ld~~r~~~~~~~~~l~~~~~~~~----~~~~~~~l~~~~~~~~~y~i~v~~~~~~~~vp~~~~~~~t 661 (1022)
T 2o8b_B 586 TGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQR----NRIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKST 661 (1022)
T ss_dssp SCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHTSSG----GGSSCSCCEEECCGGGCCEEEECTTTTSSCCCC-CEEEEE
T ss_pred CCcEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCceeEEEecCceEEEEEehhhhcccCCCceEEeee
Confidence 2344 788999999999999988888887765532 334443 4466788899999999998887 8988999999
Q ss_pred cCCcEEEeccchhhhhhHHHHHHhHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCc
Q 003258 200 SSGATYFMEPKGAVEFNNMEVRLSNSEI---AEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQ--WMDGV 274 (835)
Q Consensus 200 ~sg~t~~iep~~~v~lnn~~~~l~~~e~---~ee~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~--~~~~~ 274 (835)
.+|+++|++|. +++...++...+. ..+..++.++.+.+..+...+..+.+.++.||+++|+|.+|. ..+||
T Consensus 662 ~~~~~rf~t~e----l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~ 737 (1022)
T 2o8b_B 662 KKGCKRYWTKT----IEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMC 737 (1022)
T ss_dssp TTEEEECCTTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCSSSCEE
T ss_pred ccCccEEechH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCcc
Confidence 99999999984 5555544433322 234456666666777789999999999999999999999999 78999
Q ss_pred cccccCCCCCCCcceeeEccccCCccccccccccccccCCCCCCCCCCCCCeEEEeeeeeec-CCcee--ccceeecC--
Q 003258 275 CPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGI-SDFPV--PIDIKVEC-- 349 (835)
Q Consensus 275 ~P~~~~~~~~~~~~~i~l~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~ls~~y-~~~~v--~isl~l~~-- 349 (835)
+|.+++.. +.+..|.++++|||+|... | ++.+| +++|.+.+
T Consensus 738 ~P~~~~~~--~~~~~l~i~~~rHP~l~~~--------------------------------~~~~~~v~ndi~l~~~~~~ 783 (1022)
T 2o8b_B 738 RPVILLPE--DTPPFLELKGSRHPCITKT--------------------------------FFGDDFIPNDILIGCEEEE 783 (1022)
T ss_dssp CCEECCTT--TSCCCEEEEEECCCC--------------------------------------CCCCCCEEEEESCCCSC
T ss_pred CCccccCC--CCCceEEEEeccccEEEEE--------------------------------ecCCceEeeeeeecccccc
Confidence 99998421 0123699999999998421 2 22345 45555544
Q ss_pred -----CceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHH
Q 003258 350 -----ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVD 424 (835)
Q Consensus 350 -----g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~ 424 (835)
| ++++||||||||||||||++|++.+|+++|+|+|+.. ..++++++|+.++|..+++.+++|+||++|.+++.
T Consensus 784 ~~~~~g-~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~-~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~ 861 (1022)
T 2o8b_B 784 QENGKA-YCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEV-CRLTPIDRVFTRLGASDRIMSGESTFFVELSETAS 861 (1022)
T ss_dssp C---CC-CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSE-EEECCCSBEEEECC---------CHHHHHHHHHHH
T ss_pred ccCCCC-cEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCc-CCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHH
Confidence 6 8999999999999999999999999999999999986 67888999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcC-CcEEEEEecchhHHhhhcccccccCCceee---------c
Q 003258 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEF---------S 494 (835)
Q Consensus 425 ~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~-~~~viitTH~~el~~~~~~~~~~~n~~v~~---------~ 494 (835)
|++++++|+||||||||+|||+.++.++++++++++.+. |+++|++|||+++.......+.+.||++.+ +
T Consensus 862 al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~g~~~~~~~~~~~~~~ 941 (1022)
T 2o8b_B 862 ILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPS 941 (1022)
T ss_dssp HHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEEEEEEEC---------
T ss_pred HHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeecCeEEEEEecCcccCC
Confidence 999999999999999999999999999999999999876 899999999999776544444556787773 3
Q ss_pred ccccccchhcccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHhhch
Q 003258 495 LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRP 540 (835)
Q Consensus 495 ~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~~~~ii~~A~~~~~~~~~ 540 (835)
.+.+.++|++..|.++.|||+++|+++|+|++|+++|++.+..++.
T Consensus 942 ~~~l~~ly~l~~G~~~~Sygi~vA~l~Glp~~vi~rA~~~~~~le~ 987 (1022)
T 2o8b_B 942 QETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 987 (1022)
T ss_dssp ----CEEEEEESSCCCCCHHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred CCceEEEeeecCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999887644
No 6
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.96 E-value=8.6e-29 Score=257.72 Aligned_cols=168 Identities=17% Similarity=0.199 Sum_probs=138.5
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----------------------c
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------S 378 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-----------------------a 378 (835)
.|++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. .
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKG-EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 37899999999988665 999999999 99999999999999999999 665320 0
Q ss_pred ccceeecCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcE
Q 003258 379 KAGLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (835)
Q Consensus 379 ~~G~~vP~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~L 434 (835)
+.-.|+|+.... .+++ +++++..+|+.+..++++++|||||+ |+++|++++.+|++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l 161 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPIL 161 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 123467776421 1121 23456778888889999999999999 89999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+||||||+||||.....+.. ++..+.+.|.|+|++|||.++..+|++++.+.+|.+..+
T Consensus 162 llLDEPt~~LD~~~~~~~~~-~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 162 LFADEPTGNLDSANTKRVMD-IFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp EEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999998 555566558999999999886689999999999987654
No 7
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=2.1e-28 Score=259.70 Aligned_cols=168 Identities=21% Similarity=0.263 Sum_probs=138.2
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------------------ccccee
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLY 383 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------------------a~~G~~ 383 (835)
++|+++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.-.|
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~G-ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEG-EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence 57899999999987665 999999999 99999999999999999999 665321 111246
Q ss_pred ecCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeC
Q 003258 384 LPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 439 (835)
Q Consensus 384 vP~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDE 439 (835)
+|+.... .+++ ++.++..+|+.+..++++++|||||+ |+++|++++.+|+++||||
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 172 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE 172 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 7776421 1121 23456677888889999999999999 8999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 440 p~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||+||||.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 173 Pts~LD~~~~~~l~~-~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~ 227 (256)
T 1vpl_A 173 PTSGLDVLNAREVRK-ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVET 227 (256)
T ss_dssp TTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEE
T ss_pred CccccCHHHHHHHHH-HHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEe
Confidence 999999999999999 55556666899999999987 5668999999999988653
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.95 E-value=2e-28 Score=262.46 Aligned_cols=168 Identities=17% Similarity=0.144 Sum_probs=138.3
Q ss_pred CeEEEeeeeeecCCc-ee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------h--------------cc
Q 003258 325 SEMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M--------------SK 379 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~-~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------m--------------a~ 379 (835)
.||+++||+++|++. .+ ++||++.+| ++++|+||||||||||||+| |++.+ . .+
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~G-e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRG-EVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETT-SEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 479999999999753 24 999999999 99999999999999999999 66532 1 11
Q ss_pred cceeecCCCC---CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcE
Q 003258 380 AGLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (835)
Q Consensus 380 ~G~~vP~~~~---~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~L 434 (835)
.-.++|+... ..+++ +++++..+|+.+..++++++|||||+ |+++|++++.+|++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~l 164 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 164 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 2346777531 12222 33457788998889999999999999 89999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHHh-cCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 435 VLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~-~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|||||||+||||.....+.. ++..+. +.|.|+|++|||++ +..+|++++.+.+|.+..+
T Consensus 165 LlLDEPts~LD~~~~~~i~~-~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~ 225 (275)
T 3gfo_A 165 LILDEPTAGLDPMGVSEIMK-LLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQ 225 (275)
T ss_dssp EEEECTTTTCCHHHHHHHHH-HHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEE
T ss_pred EEEECccccCCHHHHHHHHH-HHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999998 555565 55899999999987 5679999999999988765
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.95 E-value=2.5e-28 Score=260.60 Aligned_cols=168 Identities=14% Similarity=0.177 Sum_probs=138.5
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hcccce
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGL 382 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~~G~ 382 (835)
.|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ +++...
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~G-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASG-EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 47999999999998776 999999999 99999999999999999999 55432 112234
Q ss_pred eecCCCCC--CchH-------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcC------CCcE
Q 003258 383 YLPAKNHP--RLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS------RESL 434 (835)
Q Consensus 383 ~vP~~~~~--~i~~-------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~------~~~L 434 (835)
++|+.... .+++ +++++..+|+.+..++.+++|||||+ |+++|++++. +|++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~l 168 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRW 168 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEE
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 66665421 1122 34567788988889999999999999 8999999998 9999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 435 VLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|||||||+||||.....+.. ++..+.+ .+.|+|++|||.+ +..+|++++.+.+|++..+
T Consensus 169 LllDEPts~LD~~~~~~i~~-~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~ 229 (266)
T 4g1u_C 169 LFLDEPTSALDLYHQQHTLR-LLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVAC 229 (266)
T ss_dssp EEECCCCSSCCHHHHHHHHH-HHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred EEEeCccccCCHHHHHHHHH-HHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999 5555654 4579999999987 5679999999999988764
No 10
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.95 E-value=2.3e-28 Score=256.32 Aligned_cols=167 Identities=15% Similarity=0.193 Sum_probs=134.6
Q ss_pred eEEEeeeeeecCC----cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------h--------------
Q 003258 326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M-------------- 377 (835)
Q Consensus 326 ~l~~~~ls~~y~~----~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------m-------------- 377 (835)
|++++||+++|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+ .
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEG-EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence 5789999999973 233 999999999 99999999999999999999 66532 1
Q ss_pred --cccceeecCCCCC--CchHHH------------------------HHHHHcCCcccc-cCCcccchHHHH-HHHHHHH
Q 003258 378 --SKAGLYLPAKNHP--RLPWFD------------------------LILADIGDHQSL-EQNLSTFSGHIS-RIVDILE 427 (835)
Q Consensus 378 --a~~G~~vP~~~~~--~i~~~d------------------------~i~~~ig~~~~~-~~~lstfSgg~~-rl~~~~~ 427 (835)
.+.-.++|+.... .+++++ +++..+|+.+.. ++++++|||||+ |+++|++
T Consensus 80 ~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAra 159 (235)
T 3tif_A 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA 159 (235)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred HhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 1113477776521 122222 345566776654 889999999999 8999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~-~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
++.+|+++||||||+||||.....+.. ++..+.+ .|.|+|++|||+++..+|++++.+.+|.+...
T Consensus 160 l~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~ 226 (235)
T 3tif_A 160 LANNPPIILADQPTWALDSKTGEKIMQ-LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226 (235)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999 5555554 48999999999998889999999999988654
No 11
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.95 E-value=4.9e-28 Score=257.85 Aligned_cols=167 Identities=19% Similarity=0.212 Sum_probs=137.3
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc--------------ccc
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS--------------KAG 381 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma--------------~~G 381 (835)
||+++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ .. +.-
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~G-ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREG-EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCC-CEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 7999999999988665 999999999 99999999999999999999 66532 11 112
Q ss_pred eeecCCCCC--CchH----------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEE
Q 003258 382 LYLPAKNHP--RLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 436 (835)
Q Consensus 382 ~~vP~~~~~--~i~~----------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlL 436 (835)
.|+|+.... .+++ +++++..+|+.+..++.+++|||||+ |+++|++++.+|+++|
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lll 182 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIML 182 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 467776421 1111 23456677888888999999999999 8999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 437 LDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|||||+||||.....+.. ++..+.+.|.|+|++|||.+ +..+|++++.+.+|.+..+
T Consensus 183 LDEPts~LD~~~~~~~~~-~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 240 (263)
T 2olj_A 183 FDEPTSALDPEMVGEVLS-VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEE 240 (263)
T ss_dssp EESTTTTSCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred EeCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999 55556655899999999987 5679999999999988654
No 12
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=3.3e-28 Score=255.88 Aligned_cols=168 Identities=20% Similarity=0.207 Sum_probs=136.7
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------------cccc
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAG 381 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------------a~~G 381 (835)
.|++++||+++|++..+ ++||++++| ++++|+||||||||||||+| |++.+. .+.-
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRG-QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 48999999999988665 999999999 99999999999999999999 665321 1113
Q ss_pred eeecCCCCC--CchH--------------------HHHHHHHc-CCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEE
Q 003258 382 LYLPAKNHP--RLPW--------------------FDLILADI-GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (835)
Q Consensus 382 ~~vP~~~~~--~i~~--------------------~d~i~~~i-g~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLL 437 (835)
.|+|+.... .+++ ++.++..+ |+.+..++++++|||||+ |+++|++++.+|+++||
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllL 163 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMM 163 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 467776421 1122 23445666 477778899999999999 89999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||||+||||.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 164 DEPts~LD~~~~~~l~~-~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 220 (240)
T 1ji0_A 164 DEPSLGLAPILVSEVFE-VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLE 220 (240)
T ss_dssp ECTTTTCCHHHHHHHHH-HHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred cCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999 55556656899999999986 6789999999999987643
No 13
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.95 E-value=5.5e-28 Score=267.18 Aligned_cols=168 Identities=21% Similarity=0.262 Sum_probs=141.5
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh---------------------cccc
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAG 381 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m---------------------a~~G 381 (835)
||+++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+.-
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPG-EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCC-CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 6899999999998766 999999999 99999999999999999999 665321 1112
Q ss_pred eeecCCCC--CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEE
Q 003258 382 LYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (835)
Q Consensus 382 ~~vP~~~~--~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLL 437 (835)
.++|++.. ..+++ +++++..+|+.+..++++++|||||+ |+++|++++.+|++|||
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLL 162 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILL 162 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 36666641 11222 34567888999999999999999999 89999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||||+|||+..+..+...+.+.+.+.|.|+|++|||.+ ...+||++..+.+|.+...
T Consensus 163 DEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~ 220 (359)
T 3fvq_A 163 DEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQT 220 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEE
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEE
Confidence 99999999999999998677777778999999999987 5679999999999988754
No 14
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.95 E-value=9.3e-28 Score=255.72 Aligned_cols=168 Identities=18% Similarity=0.161 Sum_probs=137.5
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc----------------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS---------------- 378 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma---------------- 378 (835)
.|++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ ..
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~G-e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARAG-DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 37999999999988665 999999999 99999999999999999999 55432 11
Q ss_pred ---------ccceeecCCCCC--CchH----------------------HHHHHHHcCCccc-ccCCcccchHHHH-HHH
Q 003258 379 ---------KAGLYLPAKNHP--RLPW----------------------FDLILADIGDHQS-LEQNLSTFSGHIS-RIV 423 (835)
Q Consensus 379 ---------~~G~~vP~~~~~--~i~~----------------------~d~i~~~ig~~~~-~~~~lstfSgg~~-rl~ 423 (835)
+.-.|+|+.... .+++ +++++..+|+.+. .++.+++|||||+ |++
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~ 163 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS 163 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHH
Confidence 112367776421 1111 2345667788887 8999999999999 899
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 424 ~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+|++++.+|++|||||||+||||.....+.. ++..+.+.|.|+|++|||.+ +..+|++++.+.+|.+...
T Consensus 164 lAraL~~~p~lllLDEPts~LD~~~~~~~~~-~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (262)
T 1b0u_A 164 IARALAMEPDVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 234 (262)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999 55556666899999999987 5579999999999988654
No 15
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.95 E-value=1.4e-27 Score=253.61 Aligned_cols=168 Identities=15% Similarity=0.115 Sum_probs=137.4
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh--------------------cccc
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAG 381 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m--------------------a~~G 381 (835)
.|++++||+++|++..+ ++||++++| ++++|+||||||||||||+| |++.+. .+.-
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~G-e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKG-DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 47999999999988765 999999999 99999999999999999999 665321 0112
Q ss_pred eeecCCCC----------------C-Cch-------------------HHHHHHHHcCCcccccCCcccchHHHH-HHHH
Q 003258 382 LYLPAKNH----------------P-RLP-------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVD 424 (835)
Q Consensus 382 ~~vP~~~~----------------~-~i~-------------------~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~ 424 (835)
.++|+... . ..+ .+++++..+|+.+..++.+++|||||+ |+++
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~i 164 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEI 164 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHH
Confidence 35666531 0 001 133457778888888999999999999 8999
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 425 ~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|++++.+|+++||||||+||||.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|.+..+
T Consensus 165 AraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (257)
T 1g6h_A 165 GRALMTNPKMIVMDEPIAGVAPGLAHDIFN-HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234 (257)
T ss_dssp HHHHHTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999 55556666899999999987 5679999999999987653
No 16
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.95 E-value=9.9e-28 Score=265.34 Aligned_cols=170 Identities=15% Similarity=0.157 Sum_probs=139.0
Q ss_pred CCCeEEEeeeeeecCC----ce-e-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------h-----------
Q 003258 323 ENSEMTVGSLSKGISD----FP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M----------- 377 (835)
Q Consensus 323 g~~~l~~~~ls~~y~~----~~-v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------m----------- 377 (835)
...||+++||++.|++ .. + ++||++.+| ++++|+||||||||||||+| |+..+ .
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~G-ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAG-QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCC-CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 3468999999999964 22 3 999999999 99999999999999999999 55432 0
Q ss_pred ----cccceeecCCCCC--CchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHc
Q 003258 378 ----SKAGLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV 429 (835)
Q Consensus 378 ----a~~G~~vP~~~~~--~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la 429 (835)
.+.-.++|+.... .+++ +++++..+|+.+..++++++|||||+ |+++|++++
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~ 179 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALA 179 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTT
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHh
Confidence 1123477877521 1222 33457788999999999999999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHh-cCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~-~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
.+|++|||||||+||||.....+.. ++..+. +.|.|+|++|||++ +..+|+++..+.+|.+..+
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~-lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~ 245 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILE-LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 245 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEC
T ss_pred cCCCEEEEECCCccCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999 555565 55899999999988 5679999999999988754
No 17
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.94 E-value=1.7e-27 Score=263.30 Aligned_cols=171 Identities=16% Similarity=0.117 Sum_probs=138.9
Q ss_pred CCCeEEEeeeeeec-CCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----------------cccc
Q 003258 323 ENSEMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAG 381 (835)
Q Consensus 323 g~~~l~~~~ls~~y-~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-----------------a~~G 381 (835)
|..+++++||++.| ++..+ ++||++++| ++++|+||||||||||||+| |++.+- .+.-
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREG-EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE
Confidence 56799999999999 77554 999999999 99999999999999999999 665321 0112
Q ss_pred eeecCCCC--CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEE
Q 003258 382 LYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (835)
Q Consensus 382 ~~vP~~~~--~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLL 437 (835)
.++|++.. ..+++ +++++..+|+.+..++++++|||||+ |+++|++++.+|++|||
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 169 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLF 169 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 35666531 11222 23457778898889999999999999 89999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||||+|||+..+..+...+.+...+.|.|+|++|||.+ ...+|++++.+.+|.+...
T Consensus 170 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 227 (355)
T 1z47_A 170 DEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQF 227 (355)
T ss_dssp ESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999554433445899999999987 5679999999999988653
No 18
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.94 E-value=2e-27 Score=264.45 Aligned_cols=168 Identities=19% Similarity=0.231 Sum_probs=138.5
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c----------ccceeec
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S----------KAGLYLP 385 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a----------~~G~~vP 385 (835)
+|+++||+|.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. . +.-.++|
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEG-EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCC-CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence 5889999999998766 999999999 99999999999999999999 665431 0 1123667
Q ss_pred CCCC--CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCC
Q 003258 386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (835)
Q Consensus 386 ~~~~--~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~ 441 (835)
++.. ..+++ +++++..+|+.+..++++++|||||+ |++++++++.+|++|||||||
T Consensus 82 Q~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPt 161 (381)
T 3rlf_A 82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (381)
T ss_dssp TTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred cCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 6642 12222 33457788999999999999999999 899999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
++||+..+..+...+.+...+.|.|+|++|||.+ ...+||++..+.+|.+...
T Consensus 162 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~ 215 (381)
T 3rlf_A 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV 215 (381)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999998444433455899999999986 6679999999999988754
No 19
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.94 E-value=3.6e-27 Score=249.96 Aligned_cols=163 Identities=17% Similarity=0.192 Sum_probs=134.6
Q ss_pred eEEEeeeeeecC-Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------cccceeecCCCCC--Cch
Q 003258 326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP--RLP 393 (835)
Q Consensus 326 ~l~~~~ls~~y~-~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------a~~G~~vP~~~~~--~i~ 393 (835)
|++++||+++|+ +..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.-.|+|+.... .++
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~t 82 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKG-DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYS 82 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETT-CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCB
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCC
Confidence 789999999998 6655 999999999 99999999999999999999 665432 1222367765421 111
Q ss_pred H-------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHH
Q 003258 394 W-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 447 (835)
Q Consensus 394 ~-------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~ 447 (835)
+ ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||||+||||.
T Consensus 83 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~ 162 (253)
T 2nq2_C 83 VLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162 (253)
T ss_dssp HHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHH
T ss_pred HHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 1 23456778888888999999999999 899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcC-CcEEEEEecchh-HHhhhcccccccCCc
Q 003258 448 EGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAA 490 (835)
Q Consensus 448 ~~~aL~~all~~l~~~-~~~viitTH~~e-l~~~~~~~~~~~n~~ 490 (835)
....+.. ++..+.+. |.|+|++|||.+ +..+|++++.+.+|.
T Consensus 163 ~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 163 NQDIVLS-LLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN 206 (253)
T ss_dssp HHHHHHH-HHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe
Confidence 9999999 44555554 899999999987 557999999999988
No 20
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.94 E-value=4.2e-27 Score=260.65 Aligned_cols=168 Identities=18% Similarity=0.172 Sum_probs=137.9
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----------------cccceeec
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-----------------a~~G~~vP 385 (835)
|++++||+++|++..+ ++||++++| ++++|+||||||||||||+| |++.+. .+.-.++|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDG-EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCC-CEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEe
Confidence 5889999999988655 999999999 99999999999999999999 665421 01123667
Q ss_pred CCCC--CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCC
Q 003258 386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (835)
Q Consensus 386 ~~~~--~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~ 441 (835)
++.. ..+++ +++++..+|+.+..++++++|||||+ |+++|++++.+|+++||||||
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~ 161 (359)
T 2yyz_A 82 QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPL 161 (359)
T ss_dssp SSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 6641 11121 34567888998899999999999999 899999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+|||+..+..+...+.+...+.|.|+|++|||.+ ...+||+++.+.+|.+...
T Consensus 162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~ 215 (359)
T 2yyz_A 162 SNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQY 215 (359)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999554443445899999999987 5679999999999988653
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.94 E-value=4.8e-27 Score=250.79 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=136.1
Q ss_pred eEEEeeeeeecC--C---cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------h---------cccc
Q 003258 326 EMTVGSLSKGIS--D---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M---------SKAG 381 (835)
Q Consensus 326 ~l~~~~ls~~y~--~---~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------m---------a~~G 381 (835)
|++++||+++|+ + +.+ ++||++.+| ++++|+||||||||||||+| |++.+ . .+.-
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~G-e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i 80 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEG-ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNI 80 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhE
Confidence 688999999997 4 344 999999999 99999999999999999999 66532 1 1122
Q ss_pred eeecCCC---CCCchH--------------------HHHHHHHcCCc--ccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 382 LYLPAKN---HPRLPW--------------------FDLILADIGDH--QSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 382 ~~vP~~~---~~~i~~--------------------~d~i~~~ig~~--~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
.|+|+.. ...+++ +++++..+|+. +..++.+++|||||+ |+++|++++.+|+++
T Consensus 81 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 160 (266)
T 2yz2_A 81 GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160 (266)
T ss_dssp EEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 4677752 011111 34567788888 888999999999999 899999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 161 lLDEPts~LD~~~~~~l~~-~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~ 219 (266)
T 2yz2_A 161 ILDEPLVGLDREGKTDLLR-IVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFD 219 (266)
T ss_dssp EEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEE
T ss_pred EEcCccccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999 55556555899999999987 5668999999999988653
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.94 E-value=3.8e-27 Score=249.28 Aligned_cols=167 Identities=21% Similarity=0.199 Sum_probs=129.0
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hh--hhhh-------------------ccc-
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GL--ASLM-------------------SKA- 380 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gl--i~~m-------------------a~~- 380 (835)
|++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+ +.+- .+.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKG-EVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 6899999999988665 999999999 99999999999999999999 76 3210 111
Q ss_pred ceeecCCCCC--CchH------------------------HHHHHHHcCC-cccccCCccc-chHHHH-HHHHHHHHcCC
Q 003258 381 GLYLPAKNHP--RLPW------------------------FDLILADIGD-HQSLEQNLST-FSGHIS-RIVDILELVSR 431 (835)
Q Consensus 381 G~~vP~~~~~--~i~~------------------------~d~i~~~ig~-~~~~~~~lst-fSgg~~-rl~~~~~la~~ 431 (835)
..++|+.... .+++ +++++..+|+ .+..++++++ |||||+ |+++|++++.+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~ 161 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLE 161 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHC
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcC
Confidence 2356665421 1111 1234556677 4678899999 999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhH-Hhh-hcccccccCCceeec
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCL-KDKDTRFENAATEFS 494 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el-~~~-~~~~~~~~n~~v~~~ 494 (835)
|++|||||||+|||+.....+.. ++..+.+.|.|+|++|||.++ ..+ |++++.+.+|.+...
T Consensus 162 p~lllLDEPts~LD~~~~~~l~~-~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~ 225 (250)
T 2d2e_A 162 PTYAVLDETDSGLDIDALKVVAR-GVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVAT 225 (250)
T ss_dssp CSEEEEECGGGTTCHHHHHHHHH-HHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEE
T ss_pred CCEEEEeCCCcCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEE
Confidence 99999999999999999999998 556666668999999999875 456 599999999987643
No 23
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.94 E-value=4.9e-27 Score=260.39 Aligned_cols=168 Identities=16% Similarity=0.192 Sum_probs=137.3
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----------------cccceeec
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-----------------a~~G~~vP 385 (835)
|++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.-.++|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDG-EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF 81 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCC-CEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEe
Confidence 5899999999987655 999999999 99999999999999999999 665421 01123677
Q ss_pred CCCC--CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCC
Q 003258 386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (835)
Q Consensus 386 ~~~~--~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~ 441 (835)
++.. ..+++ +++++..+|+.+..++++++|||||+ |+++|++++.+|+++||||||
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 161 (362)
T 2it1_A 82 QNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPL 161 (362)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGG
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 7642 11222 23457778888889999999999999 899999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+|||+..+..+...+.+...+.|.|+|++|||.+ ...+||+++.+.+|.+...
T Consensus 162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 215 (362)
T 2it1_A 162 SNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQV 215 (362)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999444433445899999999987 5679999999999988653
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.94 E-value=3.9e-27 Score=253.03 Aligned_cols=169 Identities=14% Similarity=0.151 Sum_probs=136.0
Q ss_pred CCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc--------------c
Q 003258 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS--------------K 379 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma--------------~ 379 (835)
..|++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ .. +
T Consensus 19 ~~~l~~~~l~~~y~~~~vL~~isl~i~~G-e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQGKTILKKISWQIAKG-DKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred CceEEEEeEEEEECCEEEEEeeeEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 357999999999988765 999999999 99999999999999999999 66532 11 1
Q ss_pred cceeecCCCC----CCchH-------------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHc
Q 003258 380 AGLYLPAKNH----PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV 429 (835)
Q Consensus 380 ~G~~vP~~~~----~~i~~-------------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la 429 (835)
.-.++|+... ..+++ +++++..+|+.+..++.+++|||||+ |+++|++++
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~ 177 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALM 177 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh
Confidence 1235555421 00111 23456778888888999999999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEE--EEEecchh-HHhhhcccccccCCceeec
Q 003258 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA--VVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~v--iitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
.+|++|||||||+|||+.....+...+ ..+.+.|.|+ |++|||.+ +..+|++++.+.+|.+...
T Consensus 178 ~~p~lLlLDEPts~LD~~~~~~l~~~l-~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~ 244 (279)
T 2ihy_A 178 GQPQVLILDEPAAGLDFIARESLLSIL-DSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQ 244 (279)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHH-HHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEE
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHH-HHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999944 5555448899 99999987 4679999999999988653
No 25
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.94 E-value=6.2e-27 Score=258.42 Aligned_cols=168 Identities=20% Similarity=0.217 Sum_probs=137.5
Q ss_pred eEEEeeeeeecCCcee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----------------cccceeecC
Q 003258 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 386 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-----------------a~~G~~vP~ 386 (835)
|++++||+++|++..+ ++||++++| ++++|+||||||||||||+| |+..+. .+.-.++|+
T Consensus 1 ml~~~~l~~~y~~~~l~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 1 MIEIESLSRKWKNFSLDNLSLKVESG-EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp CEEEEEEEEECSSCEEEEEEEEECTT-CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEECCEEEeeeEEEEcCC-CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 6789999999987633 999999999 99999999999999999999 665421 111236777
Q ss_pred CCC--CCchH------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCC
Q 003258 387 KNH--PRLPW------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (835)
Q Consensus 387 ~~~--~~i~~------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glD 445 (835)
+.. ..+++ +++++..+|+.+..++++++|||||+ |++++++++.+|+++||||||+|||
T Consensus 80 ~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD 159 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSC
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 642 11222 23457778888889999999999999 8999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 446 PSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 446 p~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+..+..+...+.+...+.|.|+|++|||.+ ...+|++++.+.+|.+...
T Consensus 160 ~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~ 209 (348)
T 3d31_A 160 PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209 (348)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999554443456899999999976 6689999999999988654
No 26
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.94 E-value=4.3e-27 Score=247.43 Aligned_cols=165 Identities=19% Similarity=0.210 Sum_probs=133.4
Q ss_pred eEEEeeeeeecCCcee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c----------ccceeecC
Q 003258 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S----------KAGLYLPA 386 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a----------~~G~~vP~ 386 (835)
|++++||+++|++. + ++||++++ ++++|+||||||||||||+| |++.+. . +.-.|+|+
T Consensus 1 ml~~~~l~~~y~~~-l~~isl~i~~--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (240)
T 2onk_A 1 MFLKVRAEKRLGNF-RLNVDFEMGR--DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp CCEEEEEEEEETTE-EEEEEEEECS--SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred CEEEEEEEEEeCCE-EeeeEEEECC--EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcC
Confidence 57899999999863 5 99999987 79999999999999999999 665421 1 11235666
Q ss_pred CCCC--CchH-------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCC
Q 003258 387 KNHP--RLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 444 (835)
Q Consensus 387 ~~~~--~i~~-------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~gl 444 (835)
.... .+++ +++++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||||+||
T Consensus 78 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~L 157 (240)
T 2onk_A 78 DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAV 157 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSC
T ss_pred CCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 5311 1111 33567778888888999999999999 899999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHHh-cCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 445 DPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 445 Dp~~~~aL~~all~~l~-~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||.....+... +..+. +.|.|+|++|||.+ +..+|++++.+.+|.+...
T Consensus 158 D~~~~~~~~~~-l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~ 208 (240)
T 2onk_A 158 DLKTKGVLMEE-LRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEK 208 (240)
T ss_dssp CHHHHHHHHHH-HHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999994 45554 45889999999987 6789999999999988654
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.94 E-value=7.3e-27 Score=249.99 Aligned_cols=168 Identities=13% Similarity=0.127 Sum_probs=132.2
Q ss_pred CeEEEeeeeeecCC---cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cc
Q 003258 325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK 379 (835)
Q Consensus 325 ~~l~~~~ls~~y~~---~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~ 379 (835)
+||+++||+++|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPG-KVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 58999999999975 444 999999999 99999999999999999999 665321 11
Q ss_pred cceeecCCCCC-CchHHHHH-------------------------HHHc--CCcccccCCcccchHHHH-HHHHHHHHcC
Q 003258 380 AGLYLPAKNHP-RLPWFDLI-------------------------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVS 430 (835)
Q Consensus 380 ~G~~vP~~~~~-~i~~~d~i-------------------------~~~i--g~~~~~~~~lstfSgg~~-rl~~~~~la~ 430 (835)
.-.|+|+.... ..++.+++ +..+ |+...+++.+++|||||+ |+++|++++.
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 23467776421 11222222 2233 445556788999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHh-cCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 431 RESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~-~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+|+||||||||+|||+.....+.. ++..+. +.+.|+|++||+.++...|++++.+.+|.+...
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~-~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~ 237 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQR-LLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQ 237 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHH-HHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEE
T ss_pred CCCEEEEECCccCCCHHHHHHHHH-HHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999998 555554 458899999999886667999999999987643
No 28
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.94 E-value=7.3e-27 Score=259.87 Aligned_cols=168 Identities=17% Similarity=0.223 Sum_probs=136.1
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----------------cccceeec
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 385 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-----------------a~~G~~vP 385 (835)
|++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+.-.++|
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDG-EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence 5899999999988655 999999999 99999999999999999999 665421 01123566
Q ss_pred CCCC--CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCC
Q 003258 386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 441 (835)
Q Consensus 386 ~~~~--~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~ 441 (835)
+... ..+++ +++++..+|+.+..++.+++|||||+ |+++|++++.+|++|||||||
T Consensus 90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 169 (372)
T 1v43_A 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL 169 (372)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 6531 11111 34567888999999999999999999 899999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
+|||+..+..+...+.+...+.|.|+|++|||.+ ...+||+++.+.+|.+...
T Consensus 170 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 223 (372)
T 1v43_A 170 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQI 223 (372)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999554433445899999999987 5679999999999988653
No 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.94 E-value=9.3e-27 Score=245.28 Aligned_cols=165 Identities=13% Similarity=0.124 Sum_probs=128.5
Q ss_pred eEEEeeeeeec-CCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cccce
Q 003258 326 EMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 382 (835)
Q Consensus 326 ~l~~~~ls~~y-~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G~ 382 (835)
|++++||+++| ++..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+.-.
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPN-SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTT-EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 57899999999 55554 999999999 99999999999999999999 554321 11123
Q ss_pred eecCCCCC-CchH----------------HHHHHHHcCCccccc-----------CCcccchHHHH-HHHHHHHHcCCCc
Q 003258 383 YLPAKNHP-RLPW----------------FDLILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRES 433 (835)
Q Consensus 383 ~vP~~~~~-~i~~----------------~d~i~~~ig~~~~~~-----------~~lstfSgg~~-rl~~~~~la~~~~ 433 (835)
++|+.... ..++ +.+++..+++.+.++ +..++|||||+ |+++|++++.+|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 66665411 0111 233455556554443 45689999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
++||||||+|||+.....+...+ ..+. .+.|+|++||+.+....|++++.+.+|.+..
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l-~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~ 217 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKAL-DSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITG 217 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHH-HHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECC
T ss_pred EEEEECCcccCCHHHHHHHHHHH-HHhc-CCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999944 4555 4899999999988666799999999998754
No 30
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.94 E-value=1.4e-26 Score=257.82 Aligned_cols=168 Identities=15% Similarity=0.193 Sum_probs=137.1
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c----------------c
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S----------------K 379 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a----------------~ 379 (835)
||+++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. . +
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r 81 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDG-EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHC
Confidence 5899999999988655 999999999 99999999999999999999 665321 0 1
Q ss_pred cceeecCCCC--CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEE
Q 003258 380 AGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 435 (835)
Q Consensus 380 ~G~~vP~~~~--~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~Ll 435 (835)
.-.++|++.. ..+++ +++++..+|+.+..++++++|||||+ |++++++++.+|++|
T Consensus 82 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 161 (372)
T 1g29_1 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVF 161 (372)
T ss_dssp SEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 1235666541 11222 23456778888889999999999999 899999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 436 LLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
||||||+|||+..+..+...+.+...+.|.|+|++|||.+ ...+||+++.+.+|.+...
T Consensus 162 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 221 (372)
T 1g29_1 162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV 221 (372)
T ss_dssp EEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred EECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999554433445899999999987 5679999999999988653
No 31
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.93 E-value=1.7e-26 Score=243.86 Aligned_cols=166 Identities=15% Similarity=0.138 Sum_probs=128.4
Q ss_pred eEEEeeeeeec--CCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cccc
Q 003258 326 EMTVGSLSKGI--SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 381 (835)
Q Consensus 326 ~l~~~~ls~~y--~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~G 381 (835)
-++++||+++| ++..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+.-
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQG-EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 36799999999 34545 999999999 99999999999999999999 664321 1122
Q ss_pred eeecCCCCC-CchHHH---------------HHHHHcCCccc-----------ccCCcccchHHHH-HHHHHHHHcCCCc
Q 003258 382 LYLPAKNHP-RLPWFD---------------LILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRES 433 (835)
Q Consensus 382 ~~vP~~~~~-~i~~~d---------------~i~~~ig~~~~-----------~~~~lstfSgg~~-rl~~~~~la~~~~ 433 (835)
.|+|+.... ..++.+ .++..+++.+. +.+..++|||||+ |+++|++++.+|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 467776421 112222 23344454433 3345689999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
++||||||+|||+.....+...+ ..+. .|.|+|++||+.++...|++++.+.+|.+...
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l-~~~~-~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~ 224 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNM-HKIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 224 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHH-HHHH-TTSEEEEECSSGGGGTTSSEEEEEETTEEEEE
T ss_pred EEEEeCCcccCCHHHHHHHHHHH-HHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999955 4455 48999999999886667999999999988653
No 32
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.93 E-value=9.1e-27 Score=257.83 Aligned_cols=168 Identities=20% Similarity=0.162 Sum_probs=137.1
Q ss_pred eEEEeeeeeecCCce--e--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c---------------
Q 003258 326 EMTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S--------------- 378 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~--v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a--------------- 378 (835)
||+++||++.|++.. + ++||++.+| ++++|+||||||||||||+| |++.+- .
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENG-ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTT-CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 689999999998765 5 999999999 99999999999999999999 665321 0
Q ss_pred ccceeecCCCC--CCchH---------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcE
Q 003258 379 KAGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 434 (835)
Q Consensus 379 ~~G~~vP~~~~--~~i~~---------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~L 434 (835)
+.-.++|+... ..+++ +++++..+|+.+..++.+++|||||+ |+++|++++.+|++
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~l 161 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL 161 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 11236666541 11111 34567788998899999999999999 89999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 003258 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|||||||+|||+..+..+...+.+...+.|.|+|++|||.+ ...+|++++.+.+|.+...
T Consensus 162 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~ 222 (353)
T 1oxx_K 162 LLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQV 222 (353)
T ss_dssp EEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999554433445899999999987 5679999999999987643
No 33
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.93 E-value=1.1e-26 Score=240.05 Aligned_cols=158 Identities=18% Similarity=0.253 Sum_probs=126.6
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c-------ccceeecCC
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-------KAGLYLPAK 387 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a-------~~G~~vP~~ 387 (835)
.+|+++||++.|++ .+ ++||++.+| ++++|+||||||||||||+| |++.+. . +.-.|+|+.
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~G-e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~ 86 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKG-NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE 86 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETT-CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCC
Confidence 58999999999988 65 999999999 99999999999999999999 665321 1 122467776
Q ss_pred CCC--CchH-------------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCC
Q 003258 388 NHP--RLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (835)
Q Consensus 388 ~~~--~i~~-------------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glD 445 (835)
... .+++ ++.++..+|+.+. ++.+++|||||+ |+++|++++.+|+++||||||+|||
T Consensus 87 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD 165 (214)
T 1sgw_A 87 IIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAID 165 (214)
T ss_dssp CCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSC
T ss_pred CcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence 421 1122 2345666777777 899999999999 8999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccc
Q 003258 446 PSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRF 486 (835)
Q Consensus 446 p~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~ 486 (835)
|.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+
T Consensus 166 ~~~~~~l~~-~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~ 206 (214)
T 1sgw_A 166 EDSKHKVLK-SILEILKEKGIVIISSREELSYCDVNENLHKY 206 (214)
T ss_dssp TTTHHHHHH-HHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG
T ss_pred HHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe
Confidence 999999999 44555555789999999987 55677776654
No 34
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.93 E-value=2.2e-26 Score=245.71 Aligned_cols=169 Identities=21% Similarity=0.210 Sum_probs=133.3
Q ss_pred CCeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhh--hh-------h------------cc
Q 003258 324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SL-------M------------SK 379 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli--~~-------m------------a~ 379 (835)
..|++++||+++|+++.+ ++||++.+| ++++|+||||||||||||+| |++ .+ . .+
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPG-EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 358999999999987665 999999999 99999999999999999999 763 11 0 01
Q ss_pred c-ceeecCCCCC--Cch----------------------------HHHHHHHHcCCc-ccccCCcc-cchHHHH-HHHHH
Q 003258 380 A-GLYLPAKNHP--RLP----------------------------WFDLILADIGDH-QSLEQNLS-TFSGHIS-RIVDI 425 (835)
Q Consensus 380 ~-G~~vP~~~~~--~i~----------------------------~~d~i~~~ig~~-~~~~~~ls-tfSgg~~-rl~~~ 425 (835)
. -.++|+.... .+. .+++++..+|+. +..+++++ +|||||+ |+++|
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iA 176 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 176 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 1 2367776421 010 022446667875 45678887 5999999 89999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHH-hh-hcccccccCCceeec
Q 003258 426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CL-KDKDTRFENAATEFS 494 (835)
Q Consensus 426 ~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~-~~-~~~~~~~~n~~v~~~ 494 (835)
++++.+|++|||||||+|||+.....+.. ++..+.+.|.|+|++|||.++. .+ |++++.+.+|.+...
T Consensus 177 raL~~~p~lLlLDEPts~LD~~~~~~l~~-~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 177 QMAVLEPELCILDESDSGLDIDALKVVAD-GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHCCSEEEEESTTTTCCHHHHHHHHH-HHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999998 5566666689999999998855 44 899999999988654
No 35
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.93 E-value=3.6e-26 Score=241.58 Aligned_cols=164 Identities=19% Similarity=0.251 Sum_probs=133.9
Q ss_pred eEEEeeeeeecCCcee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------------------cccceeec
Q 003258 326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 385 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------------------a~~G~~vP 385 (835)
|++++||+++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.-.|+|
T Consensus 4 ~l~~~~l~~~---~vl~~vsl~i~~G-e~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~ 79 (249)
T 2qi9_C 4 VMQLQDVAES---TRLGPLSGEVRAG-EILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79 (249)
T ss_dssp EEEEEEEEET---TTEEEEEEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred EEEEEceEEE---EEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEEC
Confidence 7899999987 344 999999999 99999999999999999999 665321 11123677
Q ss_pred CCCCC--CchH----------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCc-------EEEEeC
Q 003258 386 AKNHP--RLPW----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES-------LVLIDE 439 (835)
Q Consensus 386 ~~~~~--~i~~----------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~-------LlLLDE 439 (835)
+.... .+++ ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+ ++||||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDE 159 (249)
T 2qi9_C 80 QQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE 159 (249)
T ss_dssp SCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESS
T ss_pred CCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEEC
Confidence 76421 1111 34567788998889999999999999 8999999999999 999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 003258 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 494 (835)
Q Consensus 440 p~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el-~~~~~~~~~~~n~~v~~~ 494 (835)
||+|||+.....+.. ++..+.+.|.|+|++|||.+. ..+|++++.+.+|.+...
T Consensus 160 Pts~LD~~~~~~l~~-~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 214 (249)
T 2qi9_C 160 PMNSLDVAQQSALDK-ILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLAS 214 (249)
T ss_dssp TTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred CcccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999 555565558999999999884 579999999999987643
No 36
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.93 E-value=4.6e-26 Score=242.62 Aligned_cols=162 Identities=21% Similarity=0.245 Sum_probs=132.7
Q ss_pred eEEEeeeeeecCC----cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------c----------ccc
Q 003258 326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S----------KAG 381 (835)
Q Consensus 326 ~l~~~~ls~~y~~----~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a----------~~G 381 (835)
|++++||+++|++ +.+ ++||++. | ++++|+||||||||||||+| |++ +- . +.|
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-G-e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~ 77 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-G-EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYS 77 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-S-SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-C-EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheE
Confidence 5789999999976 555 9999999 9 99999999999999999999 766 42 1 122
Q ss_pred eeecCCCCCCchH-----------------HHHHHHHcCCc-ccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCC
Q 003258 382 LYLPAKNHPRLPW-----------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 442 (835)
Q Consensus 382 ~~vP~~~~~~i~~-----------------~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~ 442 (835)
.|+|+.....+++ +++++..+|+. +..++++++|||||+ |+++|++++.+|+++||||||+
T Consensus 78 ~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 157 (263)
T 2pjz_A 78 TNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFE 157 (263)
T ss_dssp ECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTT
T ss_pred EEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 2677764222222 23456778888 888999999999999 8999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhc-ccccccCCceeec
Q 003258 443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKD-KDTRFENAATEFS 494 (835)
Q Consensus 443 glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~-~~~~~~n~~v~~~ 494 (835)
|||+.....+.. ++..+.+ |+|++|||.+ +..+|+ +++.+.+|.+...
T Consensus 158 ~LD~~~~~~l~~-~L~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G~i~~~ 207 (263)
T 2pjz_A 158 NVDAARRHVISR-YIKEYGK---EGILVTHELDMLNLYKEYKAYFLVGNRLQGP 207 (263)
T ss_dssp TCCHHHHHHHHH-HHHHSCS---EEEEEESCGGGGGGCTTSEEEEEETTEEEEE
T ss_pred ccCHHHHHHHHH-HHHHhcC---cEEEEEcCHHHHHHhcCceEEEEECCEEEEe
Confidence 999999999998 4455543 9999999987 567999 9999999987643
No 37
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.93 E-value=2e-26 Score=240.67 Aligned_cols=167 Identities=16% Similarity=0.120 Sum_probs=127.2
Q ss_pred CeEEEeeeeeecC--Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------cccceeecCCCCC-C
Q 003258 325 SEMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKAGLYLPAKNHP-R 391 (835)
Q Consensus 325 ~~l~~~~ls~~y~--~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a~~G~~vP~~~~~-~ 391 (835)
++++++||+++|+ +.++ ++||++++| ++++|+||||||||||||+| |++.+. .+. .|+|+.... .
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i-~~v~q~~~~~~ 82 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI-SFCSQFSWIMP 82 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCE-EEECSSCCCCS
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEE-EEEecCCcccC
Confidence 4799999999995 3444 999999999 99999999999999999999 665432 222 367776421 1
Q ss_pred chHHHH--------------HHHHcCCccc-----------ccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCC
Q 003258 392 LPWFDL--------------ILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 445 (835)
Q Consensus 392 i~~~d~--------------i~~~ig~~~~-----------~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glD 445 (835)
.++.++ ++...+..+. +.+..++|||||+ |+++|++++.+|+++||||||+|||
T Consensus 83 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD 162 (229)
T 2pze_A 83 GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 162 (229)
T ss_dssp BCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSC
T ss_pred CCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCC
Confidence 122222 2233343322 2334589999999 8999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 446 PSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 446 p~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+.....+...++..+. .+.|+|++||+.+....|++++.+.+|++...
T Consensus 163 ~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~ 210 (229)
T 2pze_A 163 VLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFY 210 (229)
T ss_dssp HHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHHhCCEEEEEECCEEEEE
Confidence 9999998874444443 37899999999886667999999999988653
No 38
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.93 E-value=3.3e-26 Score=240.29 Aligned_cols=165 Identities=15% Similarity=0.147 Sum_probs=126.5
Q ss_pred eEEEeeeeeecC--Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------cccceeecCCCCC-Cc
Q 003258 326 EMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKAGLYLPAKNHP-RL 392 (835)
Q Consensus 326 ~l~~~~ls~~y~--~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a~~G~~vP~~~~~-~i 392 (835)
|++++||+++|+ +..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+. .|+|+.... ..
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i-~~v~Q~~~~~~~ 80 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEG-ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSV-AYVPQQAWIQND 80 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCE-EEECSSCCCCSE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE-EEEcCCCcCCCc
Confidence 689999999997 3444 999999999 99999999999999999999 555431 222 356766421 12
Q ss_pred hHHHH--------------HHHHcCCc-----------ccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCH
Q 003258 393 PWFDL--------------ILADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 446 (835)
Q Consensus 393 ~~~d~--------------i~~~ig~~-----------~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp 446 (835)
++.++ +...++.. ..+++.+++|||||+ |+++|++++.+|+++||||||+||||
T Consensus 81 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~ 160 (237)
T 2cbz_A 81 SLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 160 (237)
T ss_dssp EHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCH
T ss_pred CHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 22222 22222221 124678899999999 89999999999999999999999999
Q ss_pred HhHHHHHHHHH--HHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 447 SEGVALATSIL--QYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 447 ~~~~aL~~all--~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
.....+...+. ..+. .+.|+|++||+.+...+|++++.+.+|.+..
T Consensus 161 ~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~~~d~v~~l~~G~i~~ 208 (237)
T 2cbz_A 161 HVGKHIFENVIGPKGML-KNKTRILVTHSMSYLPQVDVIIVMSGGKISE 208 (237)
T ss_dssp HHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGGGSSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhhc-CCCEEEEEecChHHHHhCCEEEEEeCCEEEE
Confidence 99999988443 2233 4789999999988666899999999998764
No 39
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.92 E-value=1.6e-25 Score=238.27 Aligned_cols=167 Identities=12% Similarity=0.051 Sum_probs=128.8
Q ss_pred CeEEEeeeeeecCCc---ee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh------h------------ccc
Q 003258 325 SEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M------------SKA 380 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~---~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------m------------a~~ 380 (835)
++++++||+++|++. .+ ++||++++| ++++|+||||||||||||+| |++.. . .+.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSG-TTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCC-CEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhcc
Confidence 579999999999762 34 999999999 99999999999999999999 66431 0 111
Q ss_pred ceeecCCCCC-CchHHHH---------------HHHHcCCccc-----------ccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 381 GLYLPAKNHP-RLPWFDL---------------ILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 381 G~~vP~~~~~-~i~~~d~---------------i~~~ig~~~~-----------~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
-.|+|+.... ..++.++ ++..+++.+. +.+.+++|||||+ |+++|++++.+|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 2467776421 1122222 2333343322 2456789999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.++...|++++.+.+|.+...
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~-~l~~l~~-~~tviivtH~~~~~~~~d~i~~l~~G~i~~~ 234 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQK-AVEDLRK-NRTLIIIAHRLSTISSAESIILLNKGKIVEK 234 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHH-HHHHHTT-TSEEEEECSSGGGSTTCSEEEEEETTEEEEE
T ss_pred CEEEEECccccCCHHHHHHHHH-HHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999988 5555654 7899999999886667999999999987643
No 40
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.92 E-value=2.3e-25 Score=241.96 Aligned_cols=167 Identities=14% Similarity=0.157 Sum_probs=129.0
Q ss_pred CeEEEeeeeeecC-Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hcccc
Q 003258 325 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 381 (835)
Q Consensus 325 ~~l~~~~ls~~y~-~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~~G 381 (835)
+.|+++||+|.|+ +..+ ++||++.+| ++++|+||||||||||||+| |++.+ +.+.-
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~G-e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPG-QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTT-CEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCC-CEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 5689999999995 4444 999999999 99999999999999999999 55432 11223
Q ss_pred eeecCCCCC-CchHHHHH---------------HHHcCC-----------cccccCCcccchHHHH-HHHHHHHHcCCCc
Q 003258 382 LYLPAKNHP-RLPWFDLI---------------LADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (835)
Q Consensus 382 ~~vP~~~~~-~i~~~d~i---------------~~~ig~-----------~~~~~~~lstfSgg~~-rl~~~~~la~~~~ 433 (835)
.++|+.... ..++.+++ +...++ ...+.....+|||||+ |+++|++++.+|+
T Consensus 131 ~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~ 210 (306)
T 3nh6_A 131 GVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPG 210 (306)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCC
Confidence 467776521 11222322 222333 2334556689999999 8999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+|||||||++||+.....|...+. .+.+ +.|+|++||+++....||+++.+.+|.+...
T Consensus 211 iLlLDEPts~LD~~~~~~i~~~l~-~l~~-~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~ 269 (306)
T 3nh6_A 211 IILLDEATSALDTSNERAIQASLA-KVCA-NRTTIVVAHRLSTVVNADQILVIKDGCIVER 269 (306)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHH-HHHT-TSEEEEECCSHHHHHTCSEEEEEETTEEEEE
T ss_pred EEEEECCcccCCHHHHHHHHHHHH-HHcC-CCEEEEEEcChHHHHcCCEEEEEECCEEEEE
Confidence 999999999999999999998554 4544 6899999999986667999999999988754
No 41
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.7e-24 Score=242.31 Aligned_cols=167 Identities=16% Similarity=0.129 Sum_probs=134.7
Q ss_pred CeEEEeeeeeec--CCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh------hh------------cccc
Q 003258 325 SEMTVGSLSKGI--SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS------LM------------SKAG 381 (835)
Q Consensus 325 ~~l~~~~ls~~y--~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~------~m------------a~~G 381 (835)
++|+++||+|.| ++..+ ++||++.+| ++++|+||||||||||||+| |+.. +. .+.-
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPG-QRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCC-CEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCE
Confidence 579999999999 55444 999999999 99999999999999999999 5542 10 1222
Q ss_pred eeecCCCCC-CchH--------------HHHHHHHcCCcccccCCccc-----------chHHHH-HHHHHHHHcCCCcE
Q 003258 382 LYLPAKNHP-RLPW--------------FDLILADIGDHQSLEQNLST-----------FSGHIS-RIVDILELVSRESL 434 (835)
Q Consensus 382 ~~vP~~~~~-~i~~--------------~d~i~~~ig~~~~~~~~lst-----------fSgg~~-rl~~~~~la~~~~L 434 (835)
.++|++... ..++ +.+++..+++.+.+++.++. |||||+ |+++|++++.+|++
T Consensus 97 g~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~l 176 (390)
T 3gd7_A 97 GVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 176 (390)
T ss_dssp EEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCE
Confidence 367776421 1122 33557778888888888887 999999 89999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 435 lLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
|||||||+|||+..+..+.. ++..+. .+.|+|++||+.+...+||+++.+.+|.+...
T Consensus 177 LLLDEPts~LD~~~~~~l~~-~l~~~~-~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~ 234 (390)
T 3gd7_A 177 LLLDEPSAHLDPVTYQIIRR-TLKQAF-ADCTVILCEARIEAMLECDQFLVIEENKVRQY 234 (390)
T ss_dssp EEEESHHHHSCHHHHHHHHH-HHHTTT-TTSCEEEECSSSGGGTTCSEEEEEETTEEEEE
T ss_pred EEEeCCccCCCHHHHHHHHH-HHHHHh-CCCEEEEEEcCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999888 444443 47899999999887678999999999988654
No 42
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.90 E-value=2.2e-24 Score=232.76 Aligned_cols=166 Identities=15% Similarity=0.093 Sum_probs=114.7
Q ss_pred CeEEEeeeeeecCCcee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hcccceeecCCCCC-CchH
Q 003258 325 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MSKAGLYLPAKNHP-RLPW 394 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma~~G~~vP~~~~~-~i~~ 394 (835)
++++++||++.+ ...+ ++||++.+| ++++|+||||||||||||+| |++.+ ..+. .|+|+.... ..++
T Consensus 39 ~~l~~~~l~~~~-~~vl~~isl~i~~G-e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i-~~v~Q~~~l~~~tv 115 (290)
T 2bbs_A 39 DSLSFSNFSLLG-TPVLKDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI-SFCSQNSWIMPGTI 115 (290)
T ss_dssp -----------C-CCSEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCE-EEECSSCCCCSSBH
T ss_pred ceEEEEEEEEcC-ceEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE-EEEeCCCccCcccH
Confidence 478899999864 2334 999999999 99999999999999999999 66543 2222 367776421 1233
Q ss_pred HHHHH-------------HHcCCcccc-----------cCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhH
Q 003258 395 FDLIL-------------ADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 449 (835)
Q Consensus 395 ~d~i~-------------~~ig~~~~~-----------~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~ 449 (835)
.+++. ...++.+.+ ....++|||||+ |+++|++++.+|+++||||||+|||+...
T Consensus 116 ~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~ 195 (290)
T 2bbs_A 116 KENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 195 (290)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHH
T ss_pred HHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHH
Confidence 44432 223333222 223579999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 450 VALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 450 ~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
..+...++..+. .+.|+|++||+.+....|++++.+.+|.+...
T Consensus 196 ~~i~~~ll~~~~-~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~ 239 (290)
T 2bbs_A 196 KEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFY 239 (290)
T ss_dssp HHHHHHCCCCCT-TTSEEEEECCCHHHHHHSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHhh-CCCEEEEEecCHHHHHcCCEEEEEECCeEEEe
Confidence 998874443343 37899999999886667999999999987643
No 43
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.89 E-value=1.4e-23 Score=244.64 Aligned_cols=164 Identities=21% Similarity=0.264 Sum_probs=129.2
Q ss_pred CCeEEEeeeeeecCCcee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------cccceeecCCCCC--Cc
Q 003258 324 NSEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKAGLYLPAKNHP--RL 392 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a~~G~~vP~~~~~--~i 392 (835)
..+++++|+++.|++..+ ..++++.+| ++++|+||||||||||||+| |++.+. ...-.++|+.... ..
T Consensus 267 ~~~l~~~~l~~~~~~~~l~~~~~~i~~G-ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~ 345 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDFQLVVDNGEAKEG-EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDG 345 (538)
T ss_dssp CEEEEECCEEEEETTEEEEECCEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSS
T ss_pred cceEEEcceEEEECCEEEEeccceECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCC
Confidence 357889999999988555 678999999 99999999999999999999 554331 1112345554311 12
Q ss_pred hHH------------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHH
Q 003258 393 PWF------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALA 453 (835)
Q Consensus 393 ~~~------------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~ 453 (835)
.+. ++++..+|+.+..++.+++|||||+ |+++|++++.+|++|||||||+|||+..+..+.
T Consensus 346 tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~ 425 (538)
T 3ozx_A 346 TVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVA 425 (538)
T ss_dssp BHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH
T ss_pred CHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence 222 3344556777788999999999999 899999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEecchh-HHhhhcccccccC
Q 003258 454 TSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (835)
Q Consensus 454 ~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n 488 (835)
..+.+...+.|.|+|++|||++ +..+||+++.+.+
T Consensus 426 ~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 426 KAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp HHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9555444456899999999987 5568999988865
No 44
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.89 E-value=2.3e-23 Score=243.07 Aligned_cols=164 Identities=21% Similarity=0.260 Sum_probs=130.0
Q ss_pred CCeEEEeeeeeecCCcee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------cccceeecCCCCC--Cch
Q 003258 324 NSEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP--RLP 393 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------a~~G~~vP~~~~~--~i~ 393 (835)
..+++++|+++.|++..+ .++|++.+| ++++|+||||||||||||+| |++.+- ...-.|+|+.... .++
T Consensus 285 ~~~l~~~~l~~~~~~~~l~~~~~~i~~G-e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~t 363 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSFRLEVEPGEIKKG-EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGT 363 (538)
T ss_dssp CEEEEECCEEEEETTEEEEECCEEEETT-CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSB
T ss_pred CeEEEEeeEEEEECCEEEEeCccccCCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCc
Confidence 357899999999987545 788999999 99999999999999999999 655432 1112367776421 122
Q ss_pred HH-----------------HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHH
Q 003258 394 WF-----------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS 455 (835)
Q Consensus 394 ~~-----------------d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~a 455 (835)
+. ++++..+|+.+..++++++|||||+ |+++|++++.+|++|||||||+|||+.....|...
T Consensus 364 v~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~ 443 (538)
T 1yqt_A 364 VYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 443 (538)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 21 2234456777788999999999999 89999999999999999999999999999999995
Q ss_pred HHHHHhcCCcEEEEEecchh-HHhhhcccccccC
Q 003258 456 ILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (835)
Q Consensus 456 ll~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n 488 (835)
+.+...+.|.|+|++|||.+ +..+|++++.+.+
T Consensus 444 l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~ 477 (538)
T 1yqt_A 444 IRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEG 477 (538)
T ss_dssp HHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 54443456899999999987 5679999988875
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.89 E-value=4e-23 Score=243.74 Aligned_cols=164 Identities=21% Similarity=0.241 Sum_probs=131.9
Q ss_pred CCeEEEeeeeeecCCcee-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh------cccceeecCCCCC--Cch
Q 003258 324 NSEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP--RLP 393 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m------a~~G~~vP~~~~~--~i~ 393 (835)
..+++++|+++.|++..+ .+++++.+| ++++|+||||||||||||+| |++.+- ...-.|+|+.... .++
T Consensus 355 ~~~l~~~~l~~~~~~~~l~~~~~~v~~G-ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~t 433 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSFKLEVEPGEIRKG-EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGT 433 (607)
T ss_dssp CEEEEECCEEEECSSCEEEECCEEEETT-CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSB
T ss_pred ceEEEEeceEEEecceEEEecccccCCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCc
Confidence 357899999999987545 788899999 99999999999999999999 665431 1122367776421 111
Q ss_pred H-----------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHH
Q 003258 394 W-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS 455 (835)
Q Consensus 394 ~-----------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~a 455 (835)
+ +++++..+|+.+..++.+++|||||+ |+++|++++.+|++|||||||+|||+.....+...
T Consensus 434 v~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~ 513 (607)
T 3bk7_A 434 VYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 513 (607)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 1 13346677888888999999999999 89999999999999999999999999999999995
Q ss_pred HHHHHhcCCcEEEEEecchh-HHhhhcccccccC
Q 003258 456 ILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (835)
Q Consensus 456 ll~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n 488 (835)
+.+...+.|.|+|++|||.+ +..+|++++.+.+
T Consensus 514 l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 514 IRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 547 (607)
T ss_dssp HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 54443456899999999987 5668999988864
No 46
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.89 E-value=4e-23 Score=243.61 Aligned_cols=168 Identities=14% Similarity=0.154 Sum_probs=128.5
Q ss_pred CCeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cc
Q 003258 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK 379 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~ 379 (835)
.++++++||+++|++ +++ ++||++++| ++++|+||||||||||+|++ |+..+- .+
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G-~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQG-KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRR 417 (582)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhc
Confidence 368999999999974 444 999999999 99999999999999999999 554321 11
Q ss_pred cceeecCCCCC-CchH----------------HHHHHHHcCCccc-----------ccCCcccchHHHH-HHHHHHHHcC
Q 003258 380 AGLYLPAKNHP-RLPW----------------FDLILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVS 430 (835)
Q Consensus 380 ~G~~vP~~~~~-~i~~----------------~d~i~~~ig~~~~-----------~~~~lstfSgg~~-rl~~~~~la~ 430 (835)
.-.++|++... ..++ +.+++...|..+. +....++|||||+ |+++|++++.
T Consensus 418 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~ 497 (582)
T 3b5x_A 418 HFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR 497 (582)
T ss_pred CeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc
Confidence 22366665410 0011 1223333444333 3345589999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+|+++||||||+++|+.....+...+ ..+.+ |.|+|++||+.+....||+++.+++|++...
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l-~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b5x_A 498 DAPVLILDEATSALDTESERAIQAAL-DELQK-NKTVLVIAHRLSTIEQADEILVVDEGEIIER 559 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHH-HHHcC-CCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999998855 44554 8899999999886678999999999987643
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.88 E-value=5.8e-23 Score=239.66 Aligned_cols=156 Identities=20% Similarity=0.180 Sum_probs=122.1
Q ss_pred eeeeeecCCce-e--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhc-c-------------------------
Q 003258 330 GSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-K------------------------- 379 (835)
Q Consensus 330 ~~ls~~y~~~~-v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma-~------------------------- 379 (835)
+||+++|++.. + ++| .+.+| ++++|+||||||||||||+| |++.+-. .
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~G-e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~ 102 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEG-MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTT-SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHH
T ss_pred cCcEEEECCccccccCcC-cCCCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHH
Confidence 58999998753 3 788 89999 99999999999999999999 4442110 0
Q ss_pred ---cc-eeecCCCCC-------Cc----------hHHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEE
Q 003258 380 ---AG-LYLPAKNHP-------RL----------PWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (835)
Q Consensus 380 ---~G-~~vP~~~~~-------~i----------~~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLL 437 (835)
.+ .++|+.... .+ .-+++++..+|+.+..++++++|||||+ |+++|++++.+|++|||
T Consensus 103 ~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlL 182 (538)
T 1yqt_A 103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFF 182 (538)
T ss_dssp TTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred HHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 00 122221100 00 0134678888998889999999999999 89999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccC
Q 003258 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (835)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n 488 (835)
||||+|||+.....+.. +++.+.+.|.|+|++|||++ +..+|++++.+.+
T Consensus 183 DEPTs~LD~~~~~~l~~-~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~ 233 (538)
T 1yqt_A 183 DEPSSYLDIRQRLNAAR-AIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYG 233 (538)
T ss_dssp ESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred ECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 99999999999999998 55666667899999999987 5678999887754
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.88 E-value=1e-22 Score=240.36 Aligned_cols=156 Identities=21% Similarity=0.220 Sum_probs=122.4
Q ss_pred eeeeeecCCce-e--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhc-c-------------------------
Q 003258 330 GSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-K------------------------- 379 (835)
Q Consensus 330 ~~ls~~y~~~~-v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma-~------------------------- 379 (835)
+||+++|++.. + ++| .+.+| ++++|+||||||||||||+| |++.+-. .
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~G-e~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~ 172 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDG-MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK 172 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTT-SEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCC-CEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhh
Confidence 89999998753 3 788 89999 99999999999999999999 5442110 0
Q ss_pred ---c-ceeecCCCC-----C--C----------chHHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEE
Q 003258 380 ---A-GLYLPAKNH-----P--R----------LPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 437 (835)
Q Consensus 380 ---~-G~~vP~~~~-----~--~----------i~~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLL 437 (835)
. -.++|+... . . ...+++++..+|+.+..++.+++|||||+ |+++|++++.+|++|||
T Consensus 173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlL 252 (607)
T 3bk7_A 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFF 252 (607)
T ss_dssp HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0 012222100 0 0 01245678888998889999999999999 89999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccC
Q 003258 438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (835)
Q Consensus 438 DEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n 488 (835)
||||+|||+.....+.. ++..+.+.|.|+|++|||++ +..+|++++.+.+
T Consensus 253 DEPTs~LD~~~~~~l~~-~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~ 303 (607)
T 3bk7_A 253 DEPSSYLDIRQRLKVAR-VIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYG 303 (607)
T ss_dssp ECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEES
T ss_pred ECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEecChHHHHhhCCEEEEECC
Confidence 99999999999999998 55666666899999999987 5568888877754
No 49
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=99.88 E-value=4e-23 Score=181.03 Aligned_cols=75 Identities=35% Similarity=0.511 Sum_probs=71.5
Q ss_pred CCceeeccccHHHHHHHHHHHHHcc--CCCCcEEEEecccchHHHHHHHHHhhcCCCcccccCCCCCCC--ceEEEEEC
Q 003258 761 KNSLDLRGMRVEEASHQLDIALACW--ESRSVLFVIHGMGTGVVKERVLEILRNHPRVAKYEQESPMNY--GCTVAYIK 835 (835)
Q Consensus 761 ~~~ldlrG~r~eEA~~~vd~~ld~a--~g~~~v~IiHG~GtG~Lr~~v~~~L~~~p~V~~f~~~~~~~~--G~Tvv~~~ 835 (835)
+.+|||+|||+|||...|++|||+| +|++.|+||||||||+||++|++||++||+|++|++|++++| |+|+|+||
T Consensus 4 ~~~lDLhG~~~~eA~~~l~~fl~~a~~~g~~~v~IIHGkG~GvLr~~V~~~L~~~~~V~~f~~a~~~~GG~Gat~V~Lk 82 (83)
T 2zqe_A 4 VKEVDLRGLTVAEALLEVDQALEEARALGLSTLRLLHGKGTGALRQAIREALRRDKRVESFADAPPGEGGHGVTVVALR 82 (83)
T ss_dssp CCEEECTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECCSTTSHHHHHHHHHHHHCTTEEEEEECCTTTTGGGEEEEEEC
T ss_pred ccEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhcCCceeEEEEcCcccCCCEEEEEEEe
Confidence 3589999999999999999999997 899999999999999999999999999999999999999985 79999986
No 50
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.88 E-value=4.8e-23 Score=242.99 Aligned_cols=168 Identities=14% Similarity=0.152 Sum_probs=129.7
Q ss_pred CCeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------cc
Q 003258 324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK 379 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~ 379 (835)
.++++++||+++|++ +++ ++||++++| ++++|+||||||||||+|++ |+..+- .+
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G-~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b60_A 339 TGDLEFRNVTFTYPGREVPALRNINLKIPAG-KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 417 (582)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTT-CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCccccceeEEEcCC-CEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHh
Confidence 357999999999973 444 999999999 99999999999999999999 554321 11
Q ss_pred cceeecCCCCC-CchHHHH----------------HHHHcCCcc-----------cccCCcccchHHHH-HHHHHHHHcC
Q 003258 380 AGLYLPAKNHP-RLPWFDL----------------ILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVS 430 (835)
Q Consensus 380 ~G~~vP~~~~~-~i~~~d~----------------i~~~ig~~~-----------~~~~~lstfSgg~~-rl~~~~~la~ 430 (835)
.-.++|++... ..++.++ ++...+..+ .+.....+|||||+ |+++|++++.
T Consensus 418 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~ 497 (582)
T 3b60_A 418 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred hCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence 23477776521 1122222 233333332 23345689999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+|+++||||||+++|+.....+...+ ..+.+ |.|+|++||+.+....||+++.+++|++...
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l-~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b60_A 498 DSPILILDEATSALDTESERAIQAAL-DELQK-NRTSLVIAHRLSTIEQADEIVVVEDGIIVER 559 (582)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHH-HHHHT-TSEEEEECSCGGGTTTCSEEEEEETTEEEEE
T ss_pred CCCEEEEECccccCCHHHHHHHHHHH-HHHhC-CCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999855 44554 8899999999986678999999999987643
No 51
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.87 E-value=1.6e-22 Score=239.18 Aligned_cols=167 Identities=13% Similarity=0.116 Sum_probs=127.8
Q ss_pred Ce-EEEeeeeeecCCc---ee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------c
Q 003258 325 SE-MTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S 378 (835)
Q Consensus 325 ~~-l~~~~ls~~y~~~---~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a 378 (835)
+. ++++||+++|++. ++ ++||++++| ++++|+||||||||||+|++ |+..+- .
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G-~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~ 417 (595)
T 2yl4_A 339 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSG-SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417 (595)
T ss_dssp CCCEEEEEEEEECSSCTTSEEEEEEEEEECTT-CEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHH
T ss_pred CCeEEEEEEEEEeCCCCCCccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHH
Confidence 45 8999999999742 34 999999999 99999999999999999999 554321 1
Q ss_pred ccceeecCCCCC-CchHH------------------HHHHHHcCCccc-----------ccCCcccchHHHH-HHHHHHH
Q 003258 379 KAGLYLPAKNHP-RLPWF------------------DLILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILE 427 (835)
Q Consensus 379 ~~G~~vP~~~~~-~i~~~------------------d~i~~~ig~~~~-----------~~~~lstfSgg~~-rl~~~~~ 427 (835)
+.-.++|++... ..++. .+++...|..+. +....++|||||+ |+++|++
T Consensus 418 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAra 497 (595)
T 2yl4_A 418 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARA 497 (595)
T ss_dssp HSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHH
T ss_pred hceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHH
Confidence 123467776421 11222 233444444332 2233489999999 8999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
++.+|+++||||||++||+.....+...+ ..+.+ +.|+|++||+.+....||+++.+++|++...
T Consensus 498 l~~~p~illlDEpts~LD~~~~~~i~~~l-~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 562 (595)
T 2yl4_A 498 LLKNPKILLLDEATSALDAENEYLVQEAL-DRLMD-GRTVLVIAHRLSTIKNANMVAVLDQGKITEY 562 (595)
T ss_dssp HHHCCSEEEEECCCSSCCHHHHHHHHHHH-HHHHT-TSEEEEECCCHHHHHHSSEEEEEETTEEEEE
T ss_pred HHcCCCEEEEECcccCCCHHHHHHHHHHH-HHHhc-CCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999998844 44555 7899999999886677999999999988643
No 52
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.87 E-value=1.2e-22 Score=240.09 Aligned_cols=168 Identities=12% Similarity=0.102 Sum_probs=128.0
Q ss_pred CCeEEEeeeeeecCC-cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------------------ccc
Q 003258 324 NSEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 380 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~-~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------------------a~~ 380 (835)
.+.++++||+++|++ .++ ++||++++| ++++|+||||||||||+|++ |+..+- .+.
T Consensus 352 ~~~i~~~~v~~~y~~~~~~l~~isl~i~~G-~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~ 430 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDKKKPVLKDITFHIKPG-QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSS 430 (598)
T ss_dssp CCCEEEEEEECCSSSSSCSCCSEEEECCTT-CEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CCeEEEEEEEEECCCCCccccceEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhc
Confidence 356999999999964 444 999999999 99999999999999999999 554321 112
Q ss_pred ceeecCCCCC-CchHHHHHH---------------HHcCCcccccC-----------CcccchHHHH-HHHHHHHHcCCC
Q 003258 381 GLYLPAKNHP-RLPWFDLIL---------------ADIGDHQSLEQ-----------NLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 381 G~~vP~~~~~-~i~~~d~i~---------------~~ig~~~~~~~-----------~lstfSgg~~-rl~~~~~la~~~ 432 (835)
-.++|++... ..++.+++. ...+..+.+++ ...+|||||+ |+++|++++.+|
T Consensus 431 i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p 510 (598)
T 3qf4_B 431 IGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANP 510 (598)
T ss_dssp EEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCC
T ss_pred eEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 3467776421 113334432 12222222222 2378999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+++||||||+++|+.....+...+.+ +. .|+|+|++||+.+....||+++.+++|++...
T Consensus 511 ~illlDEpts~LD~~~~~~i~~~l~~-~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 570 (598)
T 3qf4_B 511 KILILDEATSNVDTKTEKSIQAAMWK-LM-EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEM 570 (598)
T ss_dssp SEEEECCCCTTCCHHHHHHHHHHHHH-HH-TTSEEEEESCCTTHHHHCSEEEEECSSSEEEC
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHH-Hc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999885544 44 48999999999987677999999999988654
No 53
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.87 E-value=1.5e-22 Score=238.94 Aligned_cols=167 Identities=16% Similarity=0.161 Sum_probs=130.0
Q ss_pred CeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hccc
Q 003258 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 380 (835)
Q Consensus 325 ~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma~~ 380 (835)
+.++++||+++|++ .++ ++||++++| ++++|+||||||||||+|++ |++.+ +.+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G-e~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPG-SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTT-CEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 57999999999953 344 999999999 99999999999999999999 55432 1122
Q ss_pred ceeecCCCCC-CchHHHHH---------------HHHc-----------CCcccccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 381 GLYLPAKNHP-RLPWFDLI---------------LADI-----------GDHQSLEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 381 G~~vP~~~~~-~i~~~d~i---------------~~~i-----------g~~~~~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
-.++|++... ..++.+++ .... |.+..+.....+|||||+ |+++|++++.+|
T Consensus 419 i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p 498 (587)
T 3qf4_A 419 ISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKP 498 (587)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCC
T ss_pred eEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCC
Confidence 3467776521 11222222 2222 333445677889999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+++||||||+++|+.....+...+. .+. .+.|+|++||+.+....||+++.+++|++...
T Consensus 499 ~illlDEpts~LD~~~~~~i~~~l~-~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~ 558 (587)
T 3qf4_A 499 KVLILDDCTSSVDPITEKRILDGLK-RYT-KGCTTFIITQKIPTALLADKILVLHEGKVAGF 558 (587)
T ss_dssp SEEEEESCCTTSCHHHHHHHHHHHH-HHS-TTCEEEEEESCHHHHTTSSEEEEEETTEEEEE
T ss_pred CEEEEECCcccCCHHHHHHHHHHHH-HhC-CCCEEEEEecChHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999554 444 48999999999987779999999999988654
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.87 E-value=7.6e-23 Score=249.75 Aligned_cols=95 Identities=18% Similarity=0.176 Sum_probs=80.1
Q ss_pred HHHHHHcCCccc--ccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEec
Q 003258 396 DLILADIGDHQS--LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH 472 (835)
Q Consensus 396 d~i~~~ig~~~~--~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH 472 (835)
++++..+|+... .++++++|||||+ |++++++++.+|+||||||||+|||+.....|...+ .+.+.+||++||
T Consensus 881 ~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L----~~~g~tVIiISH 956 (986)
T 2iw3_A 881 EEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKAL----KEFEGGVIIITH 956 (986)
T ss_dssp HHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHH----HSCSSEEEEECS
T ss_pred HHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHH----HHhCCEEEEEEC
Confidence 456778888653 5889999999999 899999999999999999999999999887777643 344789999999
Q ss_pred chh-HHhhhcccccccCCceeec
Q 003258 473 YAD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 473 ~~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
|.+ +..+|++++.+.+|.+...
T Consensus 957 D~e~v~~l~DrVivL~~G~Iv~~ 979 (986)
T 2iw3_A 957 SAEFTKNLTEEVWAVKDGRMTPS 979 (986)
T ss_dssp CHHHHTTTCCEEECCBTTBCCC-
T ss_pred CHHHHHHhCCEEEEEECCEEEEe
Confidence 988 5679999999999987654
No 55
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.87 E-value=1.9e-22 Score=237.72 Aligned_cols=167 Identities=16% Similarity=0.172 Sum_probs=127.9
Q ss_pred CeEEEeeeeeecCC--cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------h------------ccc
Q 003258 325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M------------SKA 380 (835)
Q Consensus 325 ~~l~~~~ls~~y~~--~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------m------------a~~ 380 (835)
+.++++||+++|++ .++ ++||++++| ++++|+||||||||||+|++ |+..+ . .+.
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G-~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~ 416 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKG-ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTT-CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCC-CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 56899999999964 334 999999999 99999999999999999999 55432 1 112
Q ss_pred ceeecCCCCC-CchHHHHH---------------HHHcCCc-----------ccccCCcccchHHHH-HHHHHHHHcCCC
Q 003258 381 GLYLPAKNHP-RLPWFDLI---------------LADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSRE 432 (835)
Q Consensus 381 G~~vP~~~~~-~i~~~d~i---------------~~~ig~~-----------~~~~~~lstfSgg~~-rl~~~~~la~~~ 432 (835)
-.++|++... .-++.+++ +...+.. ..+.....+|||||+ |+++|++++.+|
T Consensus 417 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p 496 (578)
T 4a82_A 417 IGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNP 496 (578)
T ss_dssp EEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCC
T ss_pred eEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCC
Confidence 3477776521 11223332 2233332 233445579999999 899999999999
Q ss_pred cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 433 ~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+++||||||+|+|+.....+.. .+..+.+ ++|+|++||+.+....||+++.+++|++...
T Consensus 497 ~illlDEpts~LD~~~~~~i~~-~l~~~~~-~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 556 (578)
T 4a82_A 497 PILILDEATSALDLESESIIQE-ALDVLSK-DRTTLIVAHRLSTITHADKIVVIENGHIVET 556 (578)
T ss_dssp SEEEEESTTTTCCHHHHHHHHH-HHHHHTT-TSEEEEECSSGGGTTTCSEEEEEETTEEEEE
T ss_pred CEEEEECccccCCHHHHHHHHH-HHHHHcC-CCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 9999999999999999888888 4455544 6899999999987677999999999988654
No 56
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.4e-22 Score=233.19 Aligned_cols=148 Identities=18% Similarity=0.151 Sum_probs=116.8
Q ss_pred eeeeecCCce--eccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCC------------------
Q 003258 331 SLSKGISDFP--VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP------------------ 390 (835)
Q Consensus 331 ~ls~~y~~~~--v~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~------------------ 390 (835)
|++++|+... +.....+.+| ++++|+||||||||||||+| +|+..|..|..
T Consensus 82 ~~~~~Y~~~~~~l~~l~~~~~G-ei~~LvGpNGaGKSTLLkiL--------~Gll~P~~G~i~~~~~~~~~~~~~~g~~~ 152 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLPTPRPG-QVLGLVGTNGIGKSTALKIL--------AGKQKPNLGRFDDPPEWQEIIKYFRGSEL 152 (608)
T ss_dssp TEEEECSTTSCEEECCCCCCTT-SEEEEECCTTSSHHHHHHHH--------HTSSCCCTTTTCCSSCHHHHHHHTTTSTH
T ss_pred CeEEEECCCceeecCCCCCCCC-CEEEEECCCCChHHHHHHHH--------hcCCCCCCceEecccchhhhhheecChhh
Confidence 4567776432 2222356788 99999999999999999999 33333332211
Q ss_pred ----------------------Cc-----------------------hHHHHHHHHcCCcccccCCcccchHHHH-HHHH
Q 003258 391 ----------------------RL-----------------------PWFDLILADIGDHQSLEQNLSTFSGHIS-RIVD 424 (835)
Q Consensus 391 ----------------------~i-----------------------~~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~ 424 (835)
.+ ..+++++..+|+....++.+++|||||+ |+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~i 232 (608)
T 3j16_B 153 QNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAI 232 (608)
T ss_dssp HHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHH
T ss_pred hhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHH
Confidence 00 1234567888999999999999999999 8999
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccC
Q 003258 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 488 (835)
Q Consensus 425 ~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n 488 (835)
|++++.+|++|||||||+||||.+...+.. ++..+.+.|.|+|++||+++ +..+|+++..+.+
T Consensus 233 AraL~~~p~llllDEPts~LD~~~~~~l~~-~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~ 296 (608)
T 3j16_B 233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQ-IIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYG 296 (608)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHH-HHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEES
T ss_pred HHHHHhCCCEEEEECcccCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999998 67777777899999999987 6678888877654
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.86 E-value=1.4e-21 Score=238.69 Aligned_cols=161 Identities=16% Similarity=0.190 Sum_probs=128.9
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH--Hhhhh-----hcccceeecCCC---CCCch
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL--GLASL-----MSKAGLYLPAKN---HPRLP 393 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i--Gli~~-----ma~~G~~vP~~~---~~~i~ 393 (835)
.+...|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |.+.- ..+. .|+|+.. ...++
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~G-e~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~-~~v~q~~~~~~~~lt 512 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRA-RRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT-VYVEHDIDGTHSDTS 512 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCE-EETTCCCCCCCTTSB
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeE-EEEcccccccccCCc
Confidence 4666699999998766 999999999 99999999999999999999 32210 0011 3555432 11222
Q ss_pred H--------------HHHHHHHcCCc-ccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHH
Q 003258 394 W--------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSIL 457 (835)
Q Consensus 394 ~--------------~d~i~~~ig~~-~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all 457 (835)
. +..++..+|+. +..++++++|||||+ |++++++++.+|++|||||||+|||+.....|...+.
T Consensus 513 v~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~ 592 (986)
T 2iw3_A 513 VLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN 592 (986)
T ss_dssp HHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHH
Confidence 2 34457788884 678999999999999 8999999999999999999999999999999988444
Q ss_pred HHHhcCCcEEEEEecchh-HHhhhcccccccCCcee
Q 003258 458 QYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 492 (835)
Q Consensus 458 ~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~~v~ 492 (835)
+ .|.|+|++|||.+ +..+|++++.+.+|++.
T Consensus 593 ~----~g~tvIivSHdl~~l~~~adrii~L~~G~iv 624 (986)
T 2iw3_A 593 T----CGITSITISHDSVFLDNVCEYIINYEGLKLR 624 (986)
T ss_dssp H----SCSEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred h----CCCEEEEEECCHHHHHHhCCEEEEEECCeee
Confidence 4 4889999999987 66799999999999875
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.8e-21 Score=229.33 Aligned_cols=164 Identities=21% Similarity=0.239 Sum_probs=123.0
Q ss_pred eeeeeecCCc--ee-ccceeecCCc----eEEEEEcCCCCChhhHHhhH-Hhhhhhc-----c-cceeecCCCCCCc--h
Q 003258 330 GSLSKGISDF--PV-PIDIKVECET----RVVVITGPNTGGKTASMKTL-GLASLMS-----K-AGLYLPAKNHPRL--P 393 (835)
Q Consensus 330 ~~ls~~y~~~--~v-~isl~l~~g~----~~~~I~GpNGsGKSTlLK~i-Gli~~ma-----~-~G~~vP~~~~~~i--~ 393 (835)
.++++.|++. .+ +++|++.+|. ++++|+||||||||||||+| |++.+.. . .-.++|+.....+ +
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~t 429 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGT 429 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSB
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCcc
Confidence 3455666542 23 7888887761 57999999999999999999 5554421 0 1134555421111 1
Q ss_pred H-----------------HHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHH
Q 003258 394 W-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS 455 (835)
Q Consensus 394 ~-----------------~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~a 455 (835)
+ .+.++..+|+.+..++.+++|||||+ |+++|++++.+|++|||||||+|||+.....+...
T Consensus 430 v~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~l 509 (608)
T 3j16_B 430 VRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKV 509 (608)
T ss_dssp HHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 1 23456677888889999999999999 89999999999999999999999999999999995
Q ss_pred HHHHHhcCCcEEEEEecchh-HHhhhcccccccC--Cceee
Q 003258 456 ILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN--AATEF 493 (835)
Q Consensus 456 ll~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n--~~v~~ 493 (835)
+.+...+.|.|+|++|||++ +..+||+++.+.+ |.+..
T Consensus 510 l~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~ 550 (608)
T 3j16_B 510 IRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAH 550 (608)
T ss_dssp HHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEE
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEe
Confidence 54444556899999999987 5668999988875 44443
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.84 E-value=8.6e-21 Score=221.07 Aligned_cols=148 Identities=18% Similarity=0.163 Sum_probs=113.1
Q ss_pred eeeeecCCcee-ccceee-cCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCC------------------
Q 003258 331 SLSKGISDFPV-PIDIKV-ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP------------------ 390 (835)
Q Consensus 331 ~ls~~y~~~~v-~isl~l-~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~------------------ 390 (835)
+++.+||.... -..+.+ .+| ++++|+||||||||||||+| +|+..|..|..
T Consensus 4 ~~~~~~~~~~f~l~~l~~~~~G-ei~gLiGpNGaGKSTLlkiL--------~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i 74 (538)
T 3ozx_A 4 EVIHRYKVNGFKLFGLPTPKNN-TILGVLGKNGVGKTTVLKIL--------AGEIIPNFGDPNSKVGKDEVLKRFRGKEI 74 (538)
T ss_dssp CEEEESSTTSCEEECCCCCCTT-EEEEEECCTTSSHHHHHHHH--------TTSSCCCTTCTTSCCCHHHHHHHHTTSTT
T ss_pred CCceecCCCceeecCCCCCCCC-CEEEEECCCCCcHHHHHHHH--------hcCCCCCCCccccccchhhHHhhcCCeeH
Confidence 34556653221 223333 367 99999999999999999999 33333332211
Q ss_pred ----------------------Cc------------------hHHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHc
Q 003258 391 ----------------------RL------------------PWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV 429 (835)
Q Consensus 391 ----------------------~i------------------~~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la 429 (835)
.. ...+.++..+|+....++.+++|||||+ |+++|++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~ 154 (538)
T 3ozx_A 75 YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLL 154 (538)
T ss_dssp HHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 00 0134567888998899999999999999 899999999
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCC
Q 003258 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA 489 (835)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-l~~~~~~~~~~~n~ 489 (835)
.+|++|||||||+|||+.+...+.. ++..+.+ |.|+|++||+++ +..+|+++..+.++
T Consensus 155 ~~p~illlDEPts~LD~~~~~~l~~-~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 155 READVYIFDQPSSYLDVRERMNMAK-AIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGE 213 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHH-HHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred cCCCEEEEECCcccCCHHHHHHHHH-HHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecCC
Confidence 9999999999999999999999998 6666766 899999999987 66788888766543
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.83 E-value=2.1e-20 Score=224.01 Aligned_cols=94 Identities=23% Similarity=0.229 Sum_probs=81.2
Q ss_pred HHHcCCccc-ccCCcccchHHHH-HHHHHHHHcCCCc--EEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 003258 399 LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 399 ~~~ig~~~~-~~~~lstfSgg~~-rl~~~~~la~~~~--LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~ 474 (835)
+..+|+.+. .++++++|||||+ |+++|++++.+|+ ||||||||+||||.....|.. ++..+.+.|.|+|++|||+
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~-~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA-TLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHHTTCEEEEECCCH
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCH
Confidence 555666654 6899999999999 8999999999988 999999999999999999999 6666777799999999999
Q ss_pred hHHhhhcccccc------cCCceee
Q 003258 475 DLSCLKDKDTRF------ENAATEF 493 (835)
Q Consensus 475 el~~~~~~~~~~------~n~~v~~ 493 (835)
++...|++++.+ .+|.+.+
T Consensus 265 ~~~~~~d~ii~l~~g~~~~~G~i~~ 289 (670)
T 3ux8_A 265 DTMLAADYLIDIGPGAGIHGGEVVA 289 (670)
T ss_dssp HHHHHCSEEEEECSSSGGGCCSEEE
T ss_pred HHHhhCCEEEEecccccccCCEEEE
Confidence 877789999888 6776654
No 61
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.80 E-value=5.7e-20 Score=233.94 Aligned_cols=168 Identities=15% Similarity=0.135 Sum_probs=127.9
Q ss_pred CCeEEEeeeeeecCCc---ee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hc
Q 003258 324 NSEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MS 378 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~---~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma 378 (835)
.+.++++||+++|++. ++ ++||++.+| ++++|+||||||||||+++| |+..+ +.
T Consensus 1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~G-e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKG-QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp SCCEEEEEEEBCCSCGGGCCSBSSCCEEECSS-SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHT
T ss_pred CCcEEEEEEEEECCCCCCCeeecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHH
Confidence 3579999999999753 34 999999999 99999999999999999999 55432 11
Q ss_pred ccceeecCCCCC-CchHHHH-----------------HHHHcCCccc-----------ccCCcccchHHHH-HHHHHHHH
Q 003258 379 KAGLYLPAKNHP-RLPWFDL-----------------ILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILEL 428 (835)
Q Consensus 379 ~~G~~vP~~~~~-~i~~~d~-----------------i~~~ig~~~~-----------~~~~lstfSgg~~-rl~~~~~l 428 (835)
+.-.++|++... ..++.++ .+...+..+. +....++|||||+ |+++|+++
T Consensus 1107 ~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal 1186 (1284)
T 3g5u_A 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186 (1284)
T ss_dssp TSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHH
T ss_pred hceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHH
Confidence 223477777511 1112222 2233333222 2334578999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 429 a~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+.+|++|||||||+|+|+.....+..++. .+. .|+|+|++||+++....||+++.+.+|++...
T Consensus 1187 ~~~p~iLiLDEpTs~lD~~~~~~i~~~l~-~~~-~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~ 1250 (1284)
T 3g5u_A 1187 VRQPHILLLDEATSALDTESEKVVQEALD-KAR-EGRTCIVIAHRLSTIQNADLIVVIQNGKVKEH 1250 (1284)
T ss_dssp HHCCSSEEEESCSSSCCHHHHHHHHHHHH-HHS-SSSCEEEECSCTTGGGSCSEEEEEETBEEEEE
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHH-HhC-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999988554 443 48899999999986677999999999988653
No 62
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.79 E-value=1.1e-19 Score=231.29 Aligned_cols=167 Identities=14% Similarity=0.152 Sum_probs=126.1
Q ss_pred CeEEEeeeeeecCCc---ee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------h------------cc
Q 003258 325 SEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M------------SK 379 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~---~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------m------------a~ 379 (835)
+.++++||+|+|++. ++ ++||++++| ++++|+||||||||||+++| |+..+ . .+
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G-~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSG-QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTT-CEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHh
Confidence 568999999999742 34 999999999 99999999999999999999 44432 1 11
Q ss_pred cceeecCCCCC-CchHHHHH---------------HHHcC-----------CcccccCCcccchHHHH-HHHHHHHHcCC
Q 003258 380 AGLYLPAKNHP-RLPWFDLI---------------LADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVSR 431 (835)
Q Consensus 380 ~G~~vP~~~~~-~i~~~d~i---------------~~~ig-----------~~~~~~~~lstfSgg~~-rl~~~~~la~~ 431 (835)
.-.++||+... .-++.+++ ....+ .+..+.....+|||||+ |+++|++++.+
T Consensus 465 ~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~ 544 (1284)
T 3g5u_A 465 IIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRN 544 (1284)
T ss_dssp HEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHC
T ss_pred heEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcC
Confidence 22467776521 11222332 11222 22234456779999999 89999999999
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
|+++||||||++||+.....+..++ ..+. .|+|+|++||+.+....||+++.+.+|.+...
T Consensus 545 p~iliLDEpts~LD~~~~~~i~~~l-~~~~-~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~ 605 (1284)
T 3g5u_A 545 PKILLLDEATSALDTESEAVVQAAL-DKAR-EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQ 605 (1284)
T ss_dssp CSEEEEESTTCSSCHHHHHHHHHHH-HHHH-TTSEEEEECSCHHHHTTCSEEEECSSSCCCCE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHH-HHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 9999999999999999887777744 4444 38999999999986667999999999987643
No 63
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=99.79 E-value=5.8e-20 Score=175.56 Aligned_cols=76 Identities=22% Similarity=0.291 Sum_probs=71.7
Q ss_pred CCCceeeccccHHHHHHHHHHHHHcc--CCCCcEEEEecccch------HHHHHHHHHhhcCCCcccccCCCCCCC--ce
Q 003258 760 SKNSLDLRGMRVEEASHQLDIALACW--ESRSVLFVIHGMGTG------VVKERVLEILRNHPRVAKYEQESPMNY--GC 829 (835)
Q Consensus 760 ~~~~ldlrG~r~eEA~~~vd~~ld~a--~g~~~v~IiHG~GtG------~Lr~~v~~~L~~~p~V~~f~~~~~~~~--G~ 829 (835)
+..+|||+|||+|||...|++||++| .|++.|+|||||||| +||++|++||++||+|.+|+.|++.+| ||
T Consensus 46 ~~~~LDLHG~~~~EA~~~L~~fL~~a~~~g~r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~~f~~a~~~~GG~Ga 125 (137)
T 3qd7_X 46 QQASLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGA 125 (137)
T ss_dssp GGGEEECTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEEEEEECCGGGTGGGE
T ss_pred CCeEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCchHHHHHHHHHHHhcCCceeEEeecCccCCCCEE
Confidence 34689999999999999999999997 899999999999999 999999999999999999999999985 68
Q ss_pred EEEEEC
Q 003258 830 TVAYIK 835 (835)
Q Consensus 830 Tvv~~~ 835 (835)
|+|+||
T Consensus 126 t~V~Lr 131 (137)
T 3qd7_X 126 CYVALR 131 (137)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 999985
No 64
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.78 E-value=5.5e-19 Score=211.64 Aligned_cols=95 Identities=25% Similarity=0.242 Sum_probs=80.9
Q ss_pred HHHcCCcc-cccCCcccchHHHH-HHHHHHHHcCCC---cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 003258 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE---SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 399 ~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~~~---~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~ 473 (835)
+..+|+.. ..++.+++|||||+ |+++|++++.+| .||||||||+||||.....+.. ++..+.+.|.|+|++|||
T Consensus 527 l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~-~l~~l~~~g~tvi~vtHd 605 (670)
T 3ux8_A 527 LYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLD-VLHRLVDNGDTVLVIEHN 605 (670)
T ss_dssp HHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECCC
T ss_pred HHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCC
Confidence 44566643 46889999999999 899999998876 5999999999999999999999 566677779999999999
Q ss_pred hhHHhhhcccccc------cCCceeec
Q 003258 474 ADLSCLKDKDTRF------ENAATEFS 494 (835)
Q Consensus 474 ~el~~~~~~~~~~------~n~~v~~~ 494 (835)
+++..+||+++.+ .+|.+.++
T Consensus 606 ~~~~~~~d~i~~l~~~~g~~~G~i~~~ 632 (670)
T 3ux8_A 606 LDVIKTADYIIDLGPEGGDRGGQIVAV 632 (670)
T ss_dssp HHHHTTCSEEEEEESSSGGGCCEEEEE
T ss_pred HHHHHhCCEEEEecCCcCCCCCEEEEe
Confidence 9977889999988 77887654
No 65
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.76 E-value=7.5e-19 Score=224.25 Aligned_cols=167 Identities=14% Similarity=0.129 Sum_probs=126.3
Q ss_pred CCeEEEeeeeeecCCc---ee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hc
Q 003258 324 NSEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MS 378 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~---~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma 378 (835)
.|.|+++||+|+|++. +| ++||++++| +.++|+||+|||||||++++ |+..+ +.
T Consensus 1074 ~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~G-e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR 1152 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPERPEIEILKGLSFSVEPG-QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTR 1152 (1321)
T ss_dssp CCCEEEEEEEECCTTSCSSCSEEEEEEEECTT-CEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHH
T ss_pred CCeEEEEEEEEeCCCCCCCccccceeEEECCC-CEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHH
Confidence 4679999999999642 34 999999999 99999999999999999999 33321 11
Q ss_pred ccceeecCCCCCCc--hHHH-----------------HHHHHcCCcc-----------cccCCcccchHHHH-HHHHHHH
Q 003258 379 KAGLYLPAKNHPRL--PWFD-----------------LILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILE 427 (835)
Q Consensus 379 ~~G~~vP~~~~~~i--~~~d-----------------~i~~~ig~~~-----------~~~~~lstfSgg~~-rl~~~~~ 427 (835)
+.-.++||++. -+ ++.+ +.+...++.+ .+...-+.|||||+ |+++|++
T Consensus 1153 ~~i~~V~Qdp~-LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A 1153 SQIAIVSQEPT-LFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp TTEEEECSSCC-CCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred hheEEECCCCE-eeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence 22346777652 11 1112 2233333322 23334578999999 8999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
++.+|++|||||||+++|+..-..+..++.+. . .++|+|++||.+.....||+++.+++|++...
T Consensus 1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~-~-~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~ 1296 (1321)
T 4f4c_A 1232 LVRNPKILLLDEATSALDTESEKVVQEALDRA-R-EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEK 1296 (1321)
T ss_dssp HHSCCSEEEEESCCCSTTSHHHHHHHHHHTTT-S-SSSEEEEECSSSSTTTTCSEEEEESSSSEEEE
T ss_pred HHhCCCEEEEeCccccCCHHHHHHHHHHHHHH-c-CCCEEEEeccCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999888777755432 2 37899999999987788999999999998643
No 66
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.76 E-value=1.1e-18 Score=222.85 Aligned_cols=167 Identities=15% Similarity=0.157 Sum_probs=126.4
Q ss_pred CCeEEEeeeeeecCC---cee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------------------hc
Q 003258 324 NSEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MS 378 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~---~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------ma 378 (835)
.+.++++||+|+|++ .++ ++||++++| +.++|+||+|||||||+++| |+..+ +.
T Consensus 413 ~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G-~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr 491 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSRPDVPILRGMNLRVNAG-QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLR 491 (1321)
T ss_dssp CCCEEEEEEEECCSSSTTSCSEEEEEEEECTT-CEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred CCcEEEEEeeeeCCCCCCCceeeceEEeecCC-cEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHh
Confidence 356999999999963 344 999999999 99999999999999999999 33321 11
Q ss_pred ccceeecCCCCC-CchHHHHH---------------HHHcC-----------CcccccCCcccchHHHH-HHHHHHHHcC
Q 003258 379 KAGLYLPAKNHP-RLPWFDLI---------------LADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVS 430 (835)
Q Consensus 379 ~~G~~vP~~~~~-~i~~~d~i---------------~~~ig-----------~~~~~~~~lstfSgg~~-rl~~~~~la~ 430 (835)
+.-.++||++.. .-++.++| ....+ ++-.+...-..|||||| |+++|+++..
T Consensus 492 ~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~ 571 (1321)
T 4f4c_A 492 KNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR 571 (1321)
T ss_dssp HHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred hcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence 122466766521 01122222 22222 22234455678999999 8999999999
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 003258 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n~~v~~ 493 (835)
+|+++||||||+++|+.....+..++.+ +.+ +.|+|++||.......||+++.+++|++..
T Consensus 572 ~~~IliLDE~tSaLD~~te~~i~~~l~~-~~~-~~T~iiiaHrls~i~~aD~Iivl~~G~ive 632 (1321)
T 4f4c_A 572 NPKILLLDEATSALDAESEGIVQQALDK-AAK-GRTTIIIAHRLSTIRNADLIISCKNGQVVE 632 (1321)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHH-HHT-TSEEEEECSCTTTTTTCSEEEEEETTEEEE
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHH-HhC-CCEEEEEcccHHHHHhCCEEEEeeCCeeec
Confidence 9999999999999999987777775544 433 789999999999888999999999998764
No 67
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.75 E-value=4.2e-18 Score=206.67 Aligned_cols=97 Identities=25% Similarity=0.227 Sum_probs=83.3
Q ss_pred HHHHHcCCcc-cccCCcccchHHHH-HHHHHHHHcCC---CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEe
Q 003258 397 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT 471 (835)
Q Consensus 397 ~i~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~~---~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitT 471 (835)
+++..+|+.. .+++++++|||||+ |++++++++.+ |+|+||||||+|||+.....|.. ++..+.+.|.|||++|
T Consensus 827 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~~G~TVIvis 905 (972)
T 2r6f_A 827 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLD-VLHRLVDNGDTVLVIE 905 (972)
T ss_dssp HHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEC
T ss_pred HHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEc
Confidence 4567788876 68899999999999 89999999976 49999999999999999999999 5666777799999999
Q ss_pred cchhHHhhhcccccc------cCCceeec
Q 003258 472 HYADLSCLKDKDTRF------ENAATEFS 494 (835)
Q Consensus 472 H~~el~~~~~~~~~~------~n~~v~~~ 494 (835)
||+++..+||+++.+ .+|.+.+.
T Consensus 906 Hdl~~i~~aDrIivL~p~gG~~~G~Iv~~ 934 (972)
T 2r6f_A 906 HNLDVIKTADYIIDLGPEGGDRGGQIVAV 934 (972)
T ss_dssp CCHHHHTTCSEEEEECSSSTTSCCSEEEE
T ss_pred CCHHHHHhCCEEEEEcCCCCCCCCEEEEe
Confidence 999877789999988 46766543
No 68
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.75 E-value=7.7e-18 Score=203.98 Aligned_cols=97 Identities=21% Similarity=0.185 Sum_probs=83.3
Q ss_pred HHHHHcCCcc-cccCCcccchHHHH-HHHHHHHHcCC---CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEe
Q 003258 397 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT 471 (835)
Q Consensus 397 ~i~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~~---~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitT 471 (835)
+++..+|+.. .+++++++|||||+ |++++++++.+ |+|+||||||+|||+.....|.. ++..+.+.|.|||++|
T Consensus 712 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~~G~tVIvis 790 (842)
T 2vf7_A 712 DTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQR-QLVKLVDAGNTVIAVE 790 (842)
T ss_dssp HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEC
T ss_pred HHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEc
Confidence 4566777766 46899999999999 89999999986 79999999999999999999999 6666777799999999
Q ss_pred cchhHHhhhcccccc------cCCceeec
Q 003258 472 HYADLSCLKDKDTRF------ENAATEFS 494 (835)
Q Consensus 472 H~~el~~~~~~~~~~------~n~~v~~~ 494 (835)
||+++..+||+++.+ .+|.+.+.
T Consensus 791 Hdl~~i~~aDrii~L~p~~g~~~G~Iv~~ 819 (842)
T 2vf7_A 791 HKMQVVAASDWVLDIGPGAGEDGGRLVAQ 819 (842)
T ss_dssp CCHHHHTTCSEEEEECSSSGGGCCSEEEE
T ss_pred CCHHHHHhCCEEEEECCCCCCCCCEEEEE
Confidence 999866889999998 57777653
No 69
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.75 E-value=7.4e-18 Score=205.23 Aligned_cols=97 Identities=23% Similarity=0.214 Sum_probs=83.2
Q ss_pred HHHHHcCCcc-cccCCcccchHHHH-HHHHHHHHcCC---CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEe
Q 003258 397 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT 471 (835)
Q Consensus 397 ~i~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~~---~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitT 471 (835)
+++..+|+.. .+++++++|||||+ |++++++++.+ |+|+||||||+|||+.....|.. ++..+.+.|.|||++|
T Consensus 845 ~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~~G~TVIvis 923 (993)
T 2ygr_A 845 RTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLN-VINGLVDKGNTVIVIE 923 (993)
T ss_dssp HHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEC
T ss_pred HHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEc
Confidence 4566778776 67899999999999 89999999976 49999999999999999999999 5666777799999999
Q ss_pred cchhHHhhhcccccc------cCCceeec
Q 003258 472 HYADLSCLKDKDTRF------ENAATEFS 494 (835)
Q Consensus 472 H~~el~~~~~~~~~~------~n~~v~~~ 494 (835)
||+++..+|++++.+ .+|.+.+.
T Consensus 924 Hdl~~i~~aDrIivL~p~gg~~~G~Iv~~ 952 (993)
T 2ygr_A 924 HNLDVIKTSDWIIDLGPEGGAGGGTVVAQ 952 (993)
T ss_dssp CCHHHHTTCSEEEEEESSSTTSCSEEEEE
T ss_pred CCHHHHHhCCEEEEECCCcCCCCCEEEEe
Confidence 999877789999988 56776543
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.74 E-value=8e-19 Score=174.48 Aligned_cols=134 Identities=12% Similarity=0.056 Sum_probs=89.9
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH--Hhhhhh--cccceeecCCCCCCchH--HHH------HHHHcCCccccc
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL--GLASLM--SKAGLYLPAKNHPRLPW--FDL------ILADIGDHQSLE 409 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i--Gli~~m--a~~G~~vP~~~~~~i~~--~d~------i~~~ig~~~~~~ 409 (835)
++||++++| ++++|+||||||||||+|++ |...+- .-.|+..|..+...+.. ++. .....|.....+
T Consensus 1 ~vsl~i~~g-ei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 79 (171)
T 4gp7_A 1 SMKLTIPEL-SLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVD 79 (171)
T ss_dssp CEEEEEESS-EEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CccccCCCC-EEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 478999999 99999999999999999964 111000 00343333333222211 111 122334432222
Q ss_pred CCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHH----------------hHHHHHHHHHHHHhcCCcEEEEEec
Q 003258 410 QNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS----------------EGVALATSILQYLRDRVGLAVVTTH 472 (835)
Q Consensus 410 ~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~----------------~~~aL~~all~~l~~~~~~viitTH 472 (835)
.....|+|++ ++++|++++.+|.+++|||||+++|+. ....+.. ++..+.+.|.|+|++||
T Consensus 80 -~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~-~l~~l~~~g~tvi~vtH 157 (171)
T 4gp7_A 80 -ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKK-SIKGLQREGFRYVYILN 157 (171)
T ss_dssp -SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHH-HSTTHHHHTCSEEEEEC
T ss_pred -CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhh-hhhhHHhcCCcEEEEeC
Confidence 3344588888 799999999999999999999999999 4466666 44445555899999999
Q ss_pred chhHHh
Q 003258 473 YADLSC 478 (835)
Q Consensus 473 ~~el~~ 478 (835)
|.+...
T Consensus 158 ~~~~~~ 163 (171)
T 4gp7_A 158 SPEEVE 163 (171)
T ss_dssp SHHHHH
T ss_pred CHHHhh
Confidence 987544
No 71
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.73 E-value=7.8e-18 Score=205.52 Aligned_cols=97 Identities=28% Similarity=0.279 Sum_probs=82.0
Q ss_pred HHHHHcCCcc-cccCCcccchHHHH-HHHHHHHHcCCC---cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEe
Q 003258 397 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE---SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT 471 (835)
Q Consensus 397 ~i~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~~~---~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitT 471 (835)
+++.++|+.. .+.++.++|||||+ |+++|++++.+| +|+||||||+|||+.+...|.. ++..+.+.|.|||++|
T Consensus 787 ~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~-lL~~L~~~G~TVIvI~ 865 (916)
T 3pih_A 787 QVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVE-VLHRLVDRGNTVIVIE 865 (916)
T ss_dssp HHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEC
T ss_pred HHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEe
Confidence 3456677754 46789999999999 899999998765 7999999999999999999999 6666777799999999
Q ss_pred cchhHHhhhcccccc------cCCceeec
Q 003258 472 HYADLSCLKDKDTRF------ENAATEFS 494 (835)
Q Consensus 472 H~~el~~~~~~~~~~------~n~~v~~~ 494 (835)
|++++...||+++.+ .+|.+.+.
T Consensus 866 HdL~~i~~ADrIivLgp~gg~~~G~Iv~~ 894 (916)
T 3pih_A 866 HNLDVIKNADHIIDLGPEGGKEGGYIVAT 894 (916)
T ss_dssp CCHHHHTTCSEEEEEESSSGGGCCEEEEE
T ss_pred CCHHHHHhCCEEEEecCCCCCCCCEEEEE
Confidence 999977779999988 67777654
No 72
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.73 E-value=1.8e-17 Score=186.87 Aligned_cols=83 Identities=24% Similarity=0.277 Sum_probs=70.4
Q ss_pred CCccc-chHHHH-HHHHHHHHcCCC--cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccc
Q 003258 410 QNLST-FSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR 485 (835)
Q Consensus 410 ~~lst-fSgg~~-rl~~~~~la~~~--~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~ 485 (835)
++++. |||||+ |+.++++++.+| ++|||||||+|||+.....|.. ++..+. .+++||++||+.++..+|++++.
T Consensus 290 ~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~-~L~~l~-~~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 290 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRLA-DTRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp CBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHH-HHHHHT-TTSEEEEECSCHHHHTTCSEEEE
T ss_pred cchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHh-CCCEEEEEeCcHHHHhhcCeEEE
Confidence 33444 599999 899999999999 9999999999999999999999 555555 48999999999998889999999
Q ss_pred c----cCCceeec
Q 003258 486 F----ENAATEFS 494 (835)
Q Consensus 486 ~----~n~~v~~~ 494 (835)
+ .+|.+...
T Consensus 368 l~k~~~~G~~~~~ 380 (415)
T 4aby_A 368 VEKQVEDGRTVSH 380 (415)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEeccCCceEEE
Confidence 8 77766543
No 73
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.71 E-value=3.8e-17 Score=181.87 Aligned_cols=83 Identities=24% Similarity=0.203 Sum_probs=74.4
Q ss_pred cCCcccchHHHH-HHHHHHHHc------CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhc
Q 003258 409 EQNLSTFSGHIS-RIVDILELV------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 481 (835)
Q Consensus 409 ~~~lstfSgg~~-rl~~~~~la------~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~ 481 (835)
++++++|||||+ |++++++++ .+|+++||||||+||||.....+.. ++..+.+.|.|+|++||++++...|+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~-~l~~l~~~g~tvi~itH~~~~~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS-VLKELERLNKVIVFITHDREFSEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHH-HHHGGGGSSSEEEEEESCHHHHTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEecchHHHHhCC
Confidence 568899999999 788888887 7999999999999999999999998 66667777999999999999888899
Q ss_pred ccccccCCcee
Q 003258 482 KDTRFENAATE 492 (835)
Q Consensus 482 ~~~~~~n~~v~ 492 (835)
+++.+.+|.+.
T Consensus 353 ~~~~l~~G~i~ 363 (365)
T 3qf7_A 353 RKLRITGGVVV 363 (365)
T ss_dssp CEEEEETTEEC
T ss_pred EEEEEECCEEE
Confidence 99999988764
No 74
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.69 E-value=7.5e-19 Score=200.96 Aligned_cols=157 Identities=15% Similarity=0.026 Sum_probs=110.5
Q ss_pred CCeEEEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhcc------------cceeecCCCC-
Q 003258 324 NSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK------------AGLYLPAKNH- 389 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma~------------~G~~vP~~~~- 389 (835)
.+|++++||++.|+ +++|++.+| ++++|+||||||||||||+| |++....- .-.++|+...
T Consensus 116 ~~mi~~~nl~~~y~----~vsl~i~~G-e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l 190 (460)
T 2npi_A 116 HTMKYIYNLHFMLE----KIRMSNFEG-PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISA 190 (460)
T ss_dssp CTHHHHHHHHHHHH----HHHHHSSSC-CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEE
T ss_pred cchhhhhhhhehhh----cCceEeCCC-CEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhh
Confidence 36788999999996 588889999 99999999999999999999 66644311 1123444320
Q ss_pred ----CCchHHHHH------------------HHHcCCcccccCCcccchHHHH-HHHHHHH--HcCCCcE----EEEeC-
Q 003258 390 ----PRLPWFDLI------------------LADIGDHQSLEQNLSTFSGHIS-RIVDILE--LVSRESL----VLIDE- 439 (835)
Q Consensus 390 ----~~i~~~d~i------------------~~~ig~~~~~~~~lstfSgg~~-rl~~~~~--la~~~~L----lLLDE- 439 (835)
..+...+++ +..+|+.+..+ ..+|||||+ |++++++ ++.+|++ +||||
T Consensus 191 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEp 268 (460)
T 2npi_A 191 TPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP 268 (460)
T ss_dssp EECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECC
T ss_pred cccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCC
Confidence 001111122 12233333333 789999999 8999999 9999999 99999
Q ss_pred CCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh--HH-----hhhcc-----ccccc-CCcee
Q 003258 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD--LS-----CLKDK-----DTRFE-NAATE 492 (835)
Q Consensus 440 p~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e--l~-----~~~~~-----~~~~~-n~~v~ 492 (835)
||+++|+. ...|.. ++ .+.+.++|++||+++ +. .+|++ ++.+. +|.+.
T Consensus 269 Pts~LD~~-~~~l~~-l~---~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 269 SISQLDEN-LAELHH-II---EKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp CGGGSCSS-CHHHHH-HH---HHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred cccccChh-HHHHHH-HH---HHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence 99999998 333333 33 334788999999976 43 68887 66666 66554
No 75
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.64 E-value=1e-15 Score=167.35 Aligned_cols=83 Identities=19% Similarity=0.151 Sum_probs=67.5
Q ss_pred ccCCcccchHHHH-HHHHHHHHc----CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcc
Q 003258 408 LEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK 482 (835)
Q Consensus 408 ~~~~lstfSgg~~-rl~~~~~la----~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~ 482 (835)
.+..+++||+||+ +++++++++ .+|+++||||||++|||.....|.. ++..+. .+.++|++||+.++..+|+.
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~-~~~~vi~~tH~~~~~~~~d~ 290 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENS-KHTQFIVITHNKIVMEAADL 290 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHT-TTSEEEEECCCTTGGGGCSE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhc-CCCeEEEEECCHHHHhhCce
Confidence 3456789999999 788888875 6889999999999999999999998 555564 47899999999888788887
Q ss_pred c--ccccCCcee
Q 003258 483 D--TRFENAATE 492 (835)
Q Consensus 483 ~--~~~~n~~v~ 492 (835)
. +.+.+|.-.
T Consensus 291 ~~~v~~~~g~s~ 302 (322)
T 1e69_A 291 LHGVTMVNGVSA 302 (322)
T ss_dssp EEEEEESSSCEE
T ss_pred EEEEEEeCCEEE
Confidence 5 556666443
No 76
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.61 E-value=1.9e-16 Score=158.78 Aligned_cols=125 Identities=14% Similarity=0.046 Sum_probs=82.1
Q ss_pred EEEEEcCCCCChhhHHhhH-HhhhhhcccceeecCC----CCCCchH-------HHHHHHHcCCc--ccccCCcccchHH
Q 003258 353 VVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAK----NHPRLPW-------FDLILADIGDH--QSLEQNLSTFSGH 418 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i-Gli~~ma~~G~~vP~~----~~~~i~~-------~d~i~~~ig~~--~~~~~~lstfSgg 418 (835)
.++|+||||||||||||+| |++.+. -.|...... ....+++ .++++..++.. ....+++++||||
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~-~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG 80 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR-AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYF 80 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG-EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-CCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHH
Confidence 5899999999999999999 665421 122221100 0001111 01111111111 2467788999999
Q ss_pred HH-HHHHHHH-----HcCCCcEEEEeC--CCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEec---chh-HHhhhcc
Q 003258 419 IS-RIVDILE-----LVSRESLVLIDE--IGSGTDPSEGVALATSILQYLRDRVGLAVVTTH---YAD-LSCLKDK 482 (835)
Q Consensus 419 ~~-rl~~~~~-----la~~~~LlLLDE--p~~glDp~~~~aL~~all~~l~~~~~~viitTH---~~e-l~~~~~~ 482 (835)
|+ |++++++ ++.+|+++|||| |++++|+.....+... +.+.+.++|++|| +.+ +..++++
T Consensus 81 ~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~----l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI----MHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH----HTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred HHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHH----HhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 99 7898986 899999999999 9999999888777663 3345677888886 544 4556665
No 77
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=99.57 E-value=2.5e-15 Score=135.49 Aligned_cols=71 Identities=31% Similarity=0.493 Sum_probs=62.7
Q ss_pred CCCceeeccccHHHHHHHHHHHHHcc-------CCCCcEEEEecccc------hHHHHHHHHHhhcCCCcccccCCCCCC
Q 003258 760 SKNSLDLRGMRVEEASHQLDIALACW-------ESRSVLFVIHGMGT------GVVKERVLEILRNHPRVAKYEQESPMN 826 (835)
Q Consensus 760 ~~~~ldlrG~r~eEA~~~vd~~ld~a-------~g~~~v~IiHG~Gt------G~Lr~~v~~~L~~~p~V~~f~~~~~~~ 826 (835)
...+|||+||+++||+..|++||+++ .|.+.|+||||+|+ |+||.+|++||+++|+ .|.. .+
T Consensus 7 ~~~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~--~~~e---gg 81 (96)
T 2d9i_A 7 GQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSF--RFSE---IK 81 (96)
T ss_dssp SCCEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSGGGTTCTTCHHHHHHHHHHHTTC--CEEC---CS
T ss_pred CCCeEECCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECcCCCCCCCcchHHHHHHHHHhhCCC--cccc---CC
Confidence 34689999999999999999999985 68999999999999 9999999999999999 4542 24
Q ss_pred CceEEEEEC
Q 003258 827 YGCTVAYIK 835 (835)
Q Consensus 827 ~G~Tvv~~~ 835 (835)
.|+|+|+|+
T Consensus 82 ~Ga~~V~L~ 90 (96)
T 2d9i_A 82 PGCLKVMLK 90 (96)
T ss_dssp TTCEEEECC
T ss_pred CcEEEEEEc
Confidence 699999985
No 78
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.56 E-value=1.2e-14 Score=159.93 Aligned_cols=78 Identities=23% Similarity=0.261 Sum_probs=65.2
Q ss_pred cCCcccchHHHHH-------HHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhc
Q 003258 409 EQNLSTFSGHISR-------IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 481 (835)
Q Consensus 409 ~~~lstfSgg~~r-------l~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~ 481 (835)
++++++|||||++ ++++++++.+|+++||||||+||||.....+.. ++..+...+.++|++||+.++..+|+
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~vi~~sH~~~~~~~~d 321 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQVILVSHDEELKDAAD 321 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHH-HHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEEChHHHHHhCC
Confidence 5678999999984 455567788999999999999999999999998 55555666789999999988888888
Q ss_pred cccccc
Q 003258 482 KDTRFE 487 (835)
Q Consensus 482 ~~~~~~ 487 (835)
+++.+.
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 877653
No 79
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.55 E-value=1.2e-16 Score=164.30 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=72.0
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhc-c---------------cceeecCCCCCCc-hHHHHHHHHcCC---c
Q 003258 347 VECETRVVVITGPNTGGKTASMKTL-GLASLMS-K---------------AGLYLPAKNHPRL-PWFDLILADIGD---H 405 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma-~---------------~G~~vP~~~~~~i-~~~d~i~~~ig~---~ 405 (835)
+.+| ++++|+||||||||||||+| |+ .+.. . .-.|+|+.....+ .++...+..+.. .
T Consensus 19 i~~G-e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~ 96 (208)
T 3b85_A 19 IDTN-TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEP 96 (208)
T ss_dssp HHHC-SEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTSCT
T ss_pred ccCC-CEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhccH
Confidence 3788 99999999999999999999 66 4321 0 1113343321111 111111111111 1
Q ss_pred ccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh
Q 003258 406 QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC 478 (835)
Q Consensus 406 ~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~ 478 (835)
+.+..-+.. +.||+ |++++++++.+|++|||||||+| ....+.. ++..+ +.|.|+| +|||.+...
T Consensus 97 ~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~-~l~~l-~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 97 EVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKM-FLTRL-GFGSKMV-VTGDITQVD 162 (208)
T ss_dssp THHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHH-HHTTB-CTTCEEE-EEEC-----
T ss_pred HHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHH-HHHHh-cCCCEEE-EECCHHHHh
Confidence 111111111 22777 89999999999999999999999 6666766 44445 5578888 999987443
No 80
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.49 E-value=1.1e-15 Score=172.28 Aligned_cols=139 Identities=14% Similarity=0.124 Sum_probs=99.7
Q ss_pred ccceeecCCce--------------------EEEEEcCCCCChhhHHhhH-Hhhhhh-----------cccceeecCCCC
Q 003258 342 PIDIKVECETR--------------------VVVITGPNTGGKTASMKTL-GLASLM-----------SKAGLYLPAKNH 389 (835)
Q Consensus 342 ~isl~l~~g~~--------------------~~~I~GpNGsGKSTlLK~i-Gli~~m-----------a~~G~~vP~~~~ 389 (835)
++++.+++| + +++|+||||+|||||||+| |++.+- .+.| ++|+...
T Consensus 41 ~is~~i~~G-e~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~-~v~q~~~ 118 (413)
T 1tq4_A 41 LIELRMRAG-NIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER-HPYKHPN 118 (413)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC-EEEECSS
T ss_pred hccceecCC-CCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeE-Eeccccc
Confidence 899999999 8 9999999999999999999 544321 0112 3333321
Q ss_pred -CCch------------HHHHHHHHcCCcccccCCcccchHH--HH-HHHHHHHHcC----------CCcEEEEeCCCCC
Q 003258 390 -PRLP------------WFDLILADIGDHQSLEQNLSTFSGH--IS-RIVDILELVS----------RESLVLIDEIGSG 443 (835)
Q Consensus 390 -~~i~------------~~d~i~~~ig~~~~~~~~lstfSgg--~~-rl~~~~~la~----------~~~LlLLDEp~~g 443 (835)
..+. .+++++..+++.+. +..+. +|+| |+ ++.++++++. +|++++|||||+|
T Consensus 119 ~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsg 196 (413)
T 1tq4_A 119 IPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGE 196 (413)
T ss_dssp CTTEEEEECCCGGGSSCCHHHHHHHTTGGGC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTC
T ss_pred cCCeeehHhhcccchHHHHHHHHHHcCCCcc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCccccc
Confidence 0111 15677888877653 23333 9998 88 7888888887 9999999999999
Q ss_pred CCHHhHHHHHHHHHHHH----hcC----CcEEEEEecchh---HHhhhcccc
Q 003258 444 TDPSEGVALATSILQYL----RDR----VGLAVVTTHYAD---LSCLKDKDT 484 (835)
Q Consensus 444 lDp~~~~aL~~all~~l----~~~----~~~viitTH~~e---l~~~~~~~~ 484 (835)
+||.....+...+.+.. .+. ..+++++||+.+ +..+++.+.
T Consensus 197 LD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 197 PQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999999988555543 232 357889999854 677777664
No 81
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.48 E-value=2.2e-14 Score=167.05 Aligned_cols=160 Identities=11% Similarity=0.027 Sum_probs=114.7
Q ss_pred eEEEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhcccc-eeecCCCCCCchHHHHH-----
Q 003258 326 EMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAG-LYLPAKNHPRLPWFDLI----- 398 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma~~G-~~vP~~~~~~i~~~d~i----- 398 (835)
.+.+++++.+|++----++..+.+| ++++|+||||+|||||++++ |+....+... .+.+++. ...++.++
T Consensus 257 ~~~~~~l~~g~~~ld~vL~g~i~~G-~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~--~~~l~~~~~~~g~ 333 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLDEMCGGGFFKD-SIILATGATGTGKTLLVSRFVENACANKERAILFAYEES--RAQLLRNAYSWGM 333 (525)
T ss_dssp CCCCCEECCSCHHHHHHTTSSEESS-CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC--HHHHHHHHHTTSC
T ss_pred ccccceeecChHHHHHHhCCCCCCC-cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC--HHHHHHHHHHcCC
Confidence 3456677766643000134578899 99999999999999999999 5554432211 2334432 11222211
Q ss_pred ----HHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHH-----hHHHHHHHHHHHHhcCCcEEE
Q 003258 399 ----LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS-----EGVALATSILQYLRDRVGLAV 468 (835)
Q Consensus 399 ----~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~-----~~~aL~~all~~l~~~~~~vi 468 (835)
+...|.....+..+.+||+|++ ++.+++++..+|++|||| |++|+|+. .+..+.. ++..+.+.|.++|
T Consensus 334 ~~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~-ll~~l~~~g~tvi 411 (525)
T 1tf7_A 334 DFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG-VTGYAKQEEITGL 411 (525)
T ss_dssp CHHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH-HHHHHHHTTCEEE
T ss_pred CHHHHHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH-HHHHHHhCCCEEE
Confidence 1233444556778889999999 788889999999999999 99999998 7777777 7788888899999
Q ss_pred EEecch----------h-HHhhhcccccccCCc
Q 003258 469 VTTHYA----------D-LSCLKDKDTRFENAA 490 (835)
Q Consensus 469 itTH~~----------e-l~~~~~~~~~~~n~~ 490 (835)
++||+. . +..+||.++.+.++.
T Consensus 412 lvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 412 FTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999997 4 556888888766553
No 82
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=99.47 E-value=3.9e-14 Score=135.47 Aligned_cols=70 Identities=31% Similarity=0.474 Sum_probs=62.7
Q ss_pred CCceeeccccHHHHHHHHHHHHHcc-------CCCCcEEEEecccc------hHHHHHHHHHhhcCCCcccccCCCCCCC
Q 003258 761 KNSLDLRGMRVEEASHQLDIALACW-------ESRSVLFVIHGMGT------GVVKERVLEILRNHPRVAKYEQESPMNY 827 (835)
Q Consensus 761 ~~~ldlrG~r~eEA~~~vd~~ld~a-------~g~~~v~IiHG~Gt------G~Lr~~v~~~L~~~p~V~~f~~~~~~~~ 827 (835)
..+|||+||+++||+..|++||+++ .|.+.|+||||+|+ |+||.+|++||+++|+ .|..+ +.
T Consensus 53 ~~~LDLHGl~v~EA~~~L~~fL~~a~~~~~~~~g~~~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~--~~~e~---g~ 127 (135)
T 2vkc_A 53 QNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSF--RFSEI---KP 127 (135)
T ss_dssp GTEEECTTCCHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECCSCSSSCCSCCTHHHHHHHHHHTTTC--EEEEC---ST
T ss_pred CceEEeCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECCCcCCCCCCchHHHHHHHHHhcCCC--ceeeC---CC
Confidence 4689999999999999999999985 68999999999999 9999999999999996 45333 57
Q ss_pred ceEEEEEC
Q 003258 828 GCTVAYIK 835 (835)
Q Consensus 828 G~Tvv~~~ 835 (835)
|+|+|.||
T Consensus 128 G~~~V~Lk 135 (135)
T 2vkc_A 128 GCLKVMLK 135 (135)
T ss_dssp TEEEEECC
T ss_pred CeEEEEeC
Confidence 99999986
No 83
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.44 E-value=1.3e-13 Score=143.41 Aligned_cols=156 Identities=16% Similarity=0.082 Sum_probs=86.0
Q ss_pred eEEEeeeeeecCCceeccce--eecCCceEEEEEcCCCCChhhHHhhHHh-hh-hhcccceeecCCCCCCchHHHHHHHH
Q 003258 326 EMTVGSLSKGISDFPVPIDI--KVECETRVVVITGPNTGGKTASMKTLGL-AS-LMSKAGLYLPAKNHPRLPWFDLILAD 401 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v~isl--~l~~g~~~~~I~GpNGsGKSTlLK~iGl-i~-~ma~~G~~vP~~~~~~i~~~d~i~~~ 401 (835)
|+++++++.+|.+ ++--+ .+++| ++++|+||||||||||++++.. .. .-...+.++.... ....+...+..
T Consensus 6 ~~~~~~i~tg~~~--lD~~l~Ggi~~G-~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 80 (251)
T 2ehv_A 6 YQPVRRVKSGIPG--FDELIEGGFPEG-TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE--RARDLRREMAS 80 (251)
T ss_dssp --CCCEECCSCTT--TGGGTTTSEETT-CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS--CHHHHHHHHHT
T ss_pred ccccceeecCCHh--HHHHhcCCCCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC--CHHHHHHHHHH
Confidence 4555666666643 11112 57889 9999999999999999999931 11 1122222332221 11111112222
Q ss_pred cCCc-cc---------c--------------cCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCC-----HHhHHH
Q 003258 402 IGDH-QS---------L--------------EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD-----PSEGVA 451 (835)
Q Consensus 402 ig~~-~~---------~--------------~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glD-----p~~~~a 451 (835)
+|.. +. . ....+.++.+.. ..........+|++|+||||++++| +.....
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~ 160 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREV 160 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHH
T ss_pred cCCChHHHhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHH
Confidence 2221 00 0 001111222222 2222222357999999999999986 444444
Q ss_pred HHHHHHHHHhcCCcEEEEEecchhH----------Hhhh-ccccccc
Q 003258 452 LATSILQYLRDRVGLAVVTTHYADL----------SCLK-DKDTRFE 487 (835)
Q Consensus 452 L~~all~~l~~~~~~viitTH~~el----------~~~~-~~~~~~~ 487 (835)
+.. ++..+.+.|+|+|++||+.+. ..+| |+++.+.
T Consensus 161 l~~-l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 161 LLK-LNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHH-HHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHH-HHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 555 888888889999999999764 4677 8877764
No 84
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.41 E-value=1.3e-14 Score=159.30 Aligned_cols=137 Identities=14% Similarity=0.077 Sum_probs=94.7
Q ss_pred EeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcc
Q 003258 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ 406 (835)
Q Consensus 329 ~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~ 406 (835)
+++++| | ..+ ++++.+.+| ++++|+|||||||||||+++ +|++.|.++...+...+ .+...
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g-~~v~i~G~~GsGKTTll~~l--------~g~~~~~~g~i~i~~~~----e~~~~- 213 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIG-KNVIVCGGTGSGKTTYIKSI--------MEFIPKEERIISIEDTE----EIVFK- 213 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHT-CCEEEEESTTSCHHHHHHHG--------GGGSCTTSCEEEEESSC----CCCCS-
T ss_pred cCchhh-H--HHHHhhhhhhccCC-CEEEEECCCCCCHHHHHHHH--------hCCCcCCCcEEEECCee----ccccc-
Confidence 445666 5 234 789999999 89999999999999999999 77766665532221100 01110
Q ss_pred cccCCcccch-HHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccc
Q 003258 407 SLEQNLSTFS-GHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 484 (835)
Q Consensus 407 ~~~~~lstfS-gg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~ 484 (835)
...+.++-++ ||++ ++++++++..+|+++|||||++. .+.. +++.+...+.++|+|||+......+++..
T Consensus 214 ~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~-~l~~~~~g~~tvi~t~H~~~~~~~~dri~ 285 (330)
T 2pt7_A 214 HHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRSS-------EAYD-FYNVLCSGHKGTLTTLHAGSSEEAFIRLA 285 (330)
T ss_dssp SCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHH-HHHHHHTTCCCEEEEEECSSHHHHHHHHH
T ss_pred cchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHH-HHHHHhcCCCEEEEEEcccHHHHHhhhhe
Confidence 0112222332 6777 78999999999999999999981 2333 45555554457999999988888899888
Q ss_pred cccCCc
Q 003258 485 RFENAA 490 (835)
Q Consensus 485 ~~~n~~ 490 (835)
.+.+|.
T Consensus 286 ~l~~g~ 291 (330)
T 2pt7_A 286 NMSSSN 291 (330)
T ss_dssp HHHHTS
T ss_pred ehhcCC
Confidence 777664
No 85
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.40 E-value=4.7e-14 Score=155.82 Aligned_cols=153 Identities=10% Similarity=0.131 Sum_probs=107.5
Q ss_pred eEEEeeeeeecC-Cce-e-ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-------cc---------------
Q 003258 326 EMTVGSLSKGIS-DFP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SK--------------- 379 (835)
Q Consensus 326 ~l~~~~ls~~y~-~~~-v-~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-------a~--------------- 379 (835)
+++++++++.|+ +.. + ++ |.+.+| ++++|+||||+||||||++| |++..- ++
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~G-q~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIG-QRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETT-CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CeeecccceecCCCCEEEEee-eeecCC-CEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 566789999997 433 4 66 999999 99999999999999999999 554221 00
Q ss_pred ----cceeecCCCCCCchHHHHH------------HHHcCCc-ccccCCcccchHHHHHHHHHHHHcCCCcEEEEeCCCC
Q 003258 380 ----AGLYLPAKNHPRLPWFDLI------------LADIGDH-QSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGS 442 (835)
Q Consensus 380 ----~G~~vP~~~~~~i~~~d~i------------~~~ig~~-~~~~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~ 442 (835)
.-.++++.. .+...++ |.+.|.. -.+-..++.||+||++++++ +.+|++ |+
T Consensus 123 ~~~~~v~~~~~~~---~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la---l~~p~~------t~ 190 (347)
T 2obl_A 123 TLSKCVLVVTTSD---RPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA---SGEPDV------RG 190 (347)
T ss_dssp HHTTEEEEEECTT---SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH---TTCCCC------BT
T ss_pred hhhceEEEEECCC---CCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH---cCCCCc------cc
Confidence 011222221 1111111 1111100 00115789999999888887 466666 89
Q ss_pred CCCHHhHHHHHHHHHHHHhc--CCc-----EEEEEecchhHHhhhcccccccCCceeec
Q 003258 443 GTDPSEGVALATSILQYLRD--RVG-----LAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 443 glDp~~~~aL~~all~~l~~--~~~-----~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
|+||.....+.. +++.+.+ .|. ||+++|||++ ..+|+++..+.+|++.++
T Consensus 191 Gldp~~~~~l~~-ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~ 247 (347)
T 2obl_A 191 GFPPSVFSSLPK-LLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLT 247 (347)
T ss_dssp TBCHHHHHHHHH-HHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBC
T ss_pred CCCHHHHHHHHH-HHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEe
Confidence 999999999988 7777764 466 8999999988 778999999999998775
No 86
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=99.38 E-value=2.6e-13 Score=118.64 Aligned_cols=68 Identities=35% Similarity=0.559 Sum_probs=55.1
Q ss_pred ceeeccccHHHHHHHHHHHHHcc-------CCCCcEEEEecccc----hH--HHHHHHHHhhcCCCcccccCCCCCCCce
Q 003258 763 SLDLRGMRVEEASHQLDIALACW-------ESRSVLFVIHGMGT----GV--VKERVLEILRNHPRVAKYEQESPMNYGC 829 (835)
Q Consensus 763 ~ldlrG~r~eEA~~~vd~~ld~a-------~g~~~v~IiHG~Gt----G~--Lr~~v~~~L~~~p~V~~f~~~~~~~~G~ 829 (835)
+|||+||+++||+..|++||+++ .|.+.|+||||+|+ |+ ||.+|++||+++|+ .|.. .+.|+
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~hS~~g~~~Lk~~V~~~L~~~~~--~~~e---~n~G~ 76 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSF--RFSE---IKPGC 76 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC---------CHHHHHHHHHHHTTC--CEEE---EETTE
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCCCCcchHHHHHHHHHHhCCC--ceee---CCCEE
Confidence 69999999999999999999985 68899999999999 88 99999999999995 2421 25788
Q ss_pred EEEEEC
Q 003258 830 TVAYIK 835 (835)
Q Consensus 830 Tvv~~~ 835 (835)
..|.||
T Consensus 77 l~V~l~ 82 (82)
T 3fau_A 77 LKVMLK 82 (82)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 888875
No 87
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.36 E-value=1.6e-14 Score=147.49 Aligned_cols=59 Identities=12% Similarity=-0.173 Sum_probs=46.1
Q ss_pred HHcCCCcEEEEeCCCCCC----CHHhHHHHHHHHHHHHh-cCCcEEEEEecchh-HHhhhcccccc
Q 003258 427 ELVSRESLVLIDEIGSGT----DPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRF 486 (835)
Q Consensus 427 ~la~~~~LlLLDEp~~gl----Dp~~~~aL~~all~~l~-~~~~~viitTH~~e-l~~~~~~~~~~ 486 (835)
+++.+|++++||||++|+ |+.....+... +..+. +.+.++|++|||++ ...+|++++.+
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~-l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTA-RIELAAQGDFDKVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHH-HHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHHhhhccCcEEEECCCHHHHHHHHHHHHHh
Confidence 356689999999999997 67788888884 45554 45889999999987 56688888765
No 88
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.35 E-value=1.1e-12 Score=134.74 Aligned_cols=143 Identities=13% Similarity=0.099 Sum_probs=83.5
Q ss_pred eecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhc------ccceeecCCCCCCchHHHHHHHHcCCccc-ccCC---ccc
Q 003258 346 KVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNHPRLPWFDLILADIGDHQS-LEQN---LST 414 (835)
Q Consensus 346 ~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma------~~G~~vP~~~~~~i~~~d~i~~~ig~~~~-~~~~---lst 414 (835)
-+++| ++++|+||||||||||++++ |++.+-. ..-.++.........-+..++..++.... +..+ ...
T Consensus 21 gi~~G-~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 99 (231)
T 4a74_A 21 GIETQ-AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 99 (231)
T ss_dssp SEESS-EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEEC
T ss_pred CCCCC-cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEec
Confidence 46788 99999999999999999999 4333311 11123332221112234455665654321 1111 122
Q ss_pred chHHHH-H-HHHHHHH-------cCCCcEEEEeCCCCCCCHHh------------HHHHHHHHHHHHhcCCcEEEEEecc
Q 003258 415 FSGHIS-R-IVDILEL-------VSRESLVLIDEIGSGTDPSE------------GVALATSILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 415 fSgg~~-r-l~~~~~l-------a~~~~LlLLDEp~~glDp~~------------~~aL~~all~~l~~~~~~viitTH~ 473 (835)
++.... . +..+..+ ..+|++|+||||++++|+.. ...+...+.+...+.|+|+|++||+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 333332 2 3333322 45899999999999999842 1255665555555668999999995
Q ss_pred hh-----HHhhhcccccccCC
Q 003258 474 AD-----LSCLKDKDTRFENA 489 (835)
Q Consensus 474 ~e-----l~~~~~~~~~~~n~ 489 (835)
.. +..+++..+.+.++
T Consensus 180 ~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 180 QANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp C---------CCSEEEEEEEC
T ss_pred ccCcchhhHhhceEEEEEEec
Confidence 33 45677777776654
No 89
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.34 E-value=8e-15 Score=158.81 Aligned_cols=140 Identities=11% Similarity=-0.013 Sum_probs=98.3
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH-HhhhhhcccceeecCCCCC--------Cch-
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHP--------RLP- 393 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma~~G~~vP~~~~~--------~i~- 393 (835)
+|+++||+|.|+ ..+ ++++++++| ++++|+||||||||||+++| |++ -++.-.++|+.... .+.
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~G-e~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~~v~q~~~lf~~ti~~~ni~~ 176 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKK-NCLAFIGPPNTGKSMLCNSLIHFL--GGSVLSFANHKSHFWLASLADTRAAL 176 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTC-SEEEEECSSSSSHHHHHHHHHHHH--TCEEECGGGTTSGGGGGGGTTCSCEE
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCC-CEEEEECCCCCcHHHHHHHHhhhc--CceEEEEecCccccccccHHHHhhcc
Confidence 456789999997 444 999999999 99999999999999999999 665 22222234443210 111
Q ss_pred ------HHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEE
Q 003258 394 ------WFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA 467 (835)
Q Consensus 394 ------~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~v 467 (835)
.....+..+ +.+.++ ...|||||+|. +++++.+|++|| |++||+.....+..
T Consensus 177 ~~~~~~~~~~~i~~~-L~~gld--g~~LSgGqkQR--ARAll~~p~iLl----Ts~LD~~~~~~i~~------------- 234 (305)
T 2v9p_A 177 VDDATHACWRYFDTY-LRNALD--GYPVSIDRKHK--AAVQIKAPPLLV----TSNIDVQAEDRYLY------------- 234 (305)
T ss_dssp EEEECHHHHHHHHHT-TTGGGG--TCCEECCCSSC--CCCEECCCCEEE----EESSCSTTCGGGGG-------------
T ss_pred CccccHHHHHHHHHH-hHccCC--ccCcCHHHHHH--HHHHhCCCCEEE----ECCCCHHHHHHHHH-------------
Confidence 122333332 222233 67999999944 889999999999 99999988777642
Q ss_pred EEEecchhHHhhhcccccccCCceeec
Q 003258 468 VVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 468 iitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
.||+.....+|+++ .+.+|.+...
T Consensus 235 --ltH~~~~~~~aD~i-vl~~G~iv~~ 258 (305)
T 2v9p_A 235 --LHSRVQTFRFEQPC-TDESGEQPFN 258 (305)
T ss_dssp --GTTTEEEEECCCCC-CCC---CCCC
T ss_pred --HhCCHHHHHhCCEE-EEeCCEEEEe
Confidence 18988877789999 9999987653
No 90
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.32 E-value=2.1e-12 Score=125.53 Aligned_cols=78 Identities=23% Similarity=0.244 Sum_probs=67.5
Q ss_pred ccCCcccchHHHH-HHHHH------HHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhh
Q 003258 408 LEQNLSTFSGHIS-RIVDI------LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK 480 (835)
Q Consensus 408 ~~~~lstfSgg~~-rl~~~------~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~ 480 (835)
.++++++|||||+ |++++ ++++.+|+++||||||+|||+.....+.. ++..+.+.|.++|++||+.++..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiiivsH~~~~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQVILVSHDEELKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHH-HHHHTGGGSSEEEEEESCGGGGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHH-HHHHHHccCCEEEEEEChHHHHHhC
Confidence 5678999999999 67664 67889999999999999999999999998 5555665688999999999888889
Q ss_pred cccccc
Q 003258 481 DKDTRF 486 (835)
Q Consensus 481 ~~~~~~ 486 (835)
++++.+
T Consensus 130 d~ii~l 135 (148)
T 1f2t_B 130 DHVIRI 135 (148)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 988877
No 91
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.32 E-value=9e-12 Score=127.59 Aligned_cols=140 Identities=13% Similarity=0.045 Sum_probs=86.9
Q ss_pred eecCCceEEEEEcCCCCChhhHHhhHH-hhhhhcccceeecCCCCCCchHHHHHHHHcCCcc-cc--------cC-----
Q 003258 346 KVECETRVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ-SL--------EQ----- 410 (835)
Q Consensus 346 ~l~~g~~~~~I~GpNGsGKSTlLK~iG-li~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~-~~--------~~----- 410 (835)
.+.+| ++++|+||||+|||||++++. .+.......+++.... ....+...+..+|..- .. +.
T Consensus 19 gi~~G-~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (235)
T 2w0m_A 19 GIPQG-FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE--SRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEK 95 (235)
T ss_dssp SEETT-CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS--CHHHHHHHHHHTTCCCGGGBTTTEEEEECCC---
T ss_pred CCcCC-CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc--CHHHHHHHHHHhcchHHHHhhCCEEEEecccccc
Confidence 57788 999999999999999999993 3332222223333322 1111222223344221 00 00
Q ss_pred ----CcccchHHHH-HHHHHHHHcCCCc--EEEEeCCCCCC--CHHhHHHHHHHHHHHHhcCCcEEEEEecch-------
Q 003258 411 ----NLSTFSGHIS-RIVDILELVSRES--LVLIDEIGSGT--DPSEGVALATSILQYLRDRVGLAVVTTHYA------- 474 (835)
Q Consensus 411 ----~lstfSgg~~-rl~~~~~la~~~~--LlLLDEp~~gl--Dp~~~~aL~~all~~l~~~~~~viitTH~~------- 474 (835)
.....|.++. +.........+|+ +|+||||++++ |+.....+...+.+...+.++++|++||+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~ 175 (235)
T 2w0m_A 96 EDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAF 175 (235)
T ss_dssp -CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC---------
T ss_pred CceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCccccccc
Confidence 0123366665 3333344456899 99999999877 998888888866665566789999999998
Q ss_pred -h-HHhhhcccccccC
Q 003258 475 -D-LSCLKDKDTRFEN 488 (835)
Q Consensus 475 -e-l~~~~~~~~~~~n 488 (835)
. +..+||.++.+..
T Consensus 176 ~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 176 GFGVEHVADGIIRFRR 191 (235)
T ss_dssp --CHHHHCSEEEEEEE
T ss_pred ccchheeeeEEEEEEE
Confidence 2 6678888777654
No 92
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.31 E-value=5.1e-12 Score=134.90 Aligned_cols=126 Identities=12% Similarity=0.095 Sum_probs=82.9
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhhhc-----------ccceeecCCCCCCchHH---------------HHHHH
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-----------KAGLYLPAKNHPRLPWF---------------DLILA 400 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma-----------~~G~~vP~~~~~~i~~~---------------d~i~~ 400 (835)
+.+| ++++|+||||+|||||++++.....-+ ...+|+..+... -.+. ..++.
T Consensus 27 l~~G-~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~~~g~~~~~~~~~~~~~ 104 (279)
T 1nlf_A 27 MVAG-TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRLHALGAHLSAEERQAVAD 104 (279)
T ss_dssp EETT-SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ccCC-CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH-HHHHHHHHHHHhhcChhhhhhccC
Confidence 5788 999999999999999999993322111 112344444311 1111 11234
Q ss_pred HcCCcccccCCcccchHHHHHHHHHHHHcCCCcEEEEeCCCC--CCCHHhH---HHHHHHHHHHHhcCCcEEEEEecchh
Q 003258 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGS--GTDPSEG---VALATSILQYLRDRVGLAVVTTHYAD 475 (835)
Q Consensus 401 ~ig~~~~~~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~--glDp~~~---~aL~~all~~l~~~~~~viitTH~~e 475 (835)
.+++.+..++.+..||+++.+. +.+++.+|++||||||++ ++|+... ..+...+.....+.|+++|++||+..
T Consensus 105 ~l~l~~~~~~~~~~ls~g~~~~--i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 105 GLLIQPLIGSLPNIMAPEWFDG--LKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HEEECCCTTSCCCTTSHHHHHH--HHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred ceEEeecCCCCcccCCHHHHHH--HHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 4444555667889999998643 345567899999999999 9998654 56666455544566899999999975
Q ss_pred H
Q 003258 476 L 476 (835)
Q Consensus 476 l 476 (835)
.
T Consensus 183 ~ 183 (279)
T 1nlf_A 183 G 183 (279)
T ss_dssp -
T ss_pred c
Confidence 3
No 93
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.31 E-value=5.2e-12 Score=135.83 Aligned_cols=148 Identities=13% Similarity=0.083 Sum_probs=86.8
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-cccceeecCCCCCCchHHHHHHH-------------------
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-SKAGLYLPAKNHPRLPWFDLILA------------------- 400 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-a~~G~~vP~~~~~~i~~~d~i~~------------------- 400 (835)
++++.+.+| ++++|+||||+|||||++++ |++..- +...+++-.+.. .-.+..++..
T Consensus 27 ~i~~~l~~G-~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~-~~~~~~r~~~~~~~~~~~~~~~l~~~~~~ 104 (296)
T 1cr0_A 27 DKTLGARGG-EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIGLHNRVRLRQSDSLKREIIE 104 (296)
T ss_dssp HHHCSBCTT-CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC-HHHHHHHHHHHHTTCCGGGCHHHHHHHHH
T ss_pred HHhcCCCCC-eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC-HHHHHHHHHHHHcCCChhhccccccCCCC
Confidence 677889999 99999999999999999999 444332 111122221110 0001111110
Q ss_pred ---------Hc-CC-cccccCCcccchHHH-HHHHHHHHHcCCCcEEEEeCCCC---C---CCH-HhHHHHHHHHHHHHh
Q 003258 401 ---------DI-GD-HQSLEQNLSTFSGHI-SRIVDILELVSRESLVLIDEIGS---G---TDP-SEGVALATSILQYLR 461 (835)
Q Consensus 401 ---------~i-g~-~~~~~~~lstfSgg~-~rl~~~~~la~~~~LlLLDEp~~---g---lDp-~~~~aL~~all~~l~ 461 (835)
.+ .. .-.+...+..+|.++ ++.+.++++..+|++||||||++ + +|+ .....+...+.+...
T Consensus 105 ~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~ 184 (296)
T 1cr0_A 105 NGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAK 184 (296)
T ss_dssp HTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 00 00 001222224567765 44444777899999999999999 4 344 444556664444334
Q ss_pred cCCcEEEEEecch-----------------------hHHhhhcccccccCCce
Q 003258 462 DRVGLAVVTTHYA-----------------------DLSCLKDKDTRFENAAT 491 (835)
Q Consensus 462 ~~~~~viitTH~~-----------------------el~~~~~~~~~~~n~~v 491 (835)
+.+++||++||+. .+..+|+.++.+.++..
T Consensus 185 ~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 185 STGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5589999999995 45568888888776653
No 94
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.30 E-value=2.5e-13 Score=144.21 Aligned_cols=125 Identities=11% Similarity=0.126 Sum_probs=77.5
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-HhhhhhcccceeecCCCCCCchHHHHHHHH-cC-Ccc-cccCCcccchH
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILAD-IG-DHQ-SLEQNLSTFSG 417 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma~~G~~vP~~~~~~i~~~d~i~~~-ig-~~~-~~~~~lstfSg 417 (835)
+++ +.+| ++++|+|||||||||||+++ |++... ..|....... .+.++ +.. .+ ..+ .+.....+|
T Consensus 19 ~i~--i~~g-~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~--~i~~~---~~~~~~~v~q~~~gl~~~~l-- 87 (261)
T 2eyu_A 19 ELC--HRKM-GLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIED--PIEYV---FKHKKSIVNQREVGEDTKSF-- 87 (261)
T ss_dssp HGG--GCSS-EEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEES--SCCSC---CCCSSSEEEEEEBTTTBSCH--
T ss_pred HHh--hCCC-CEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCC--cceee---cCCcceeeeHHHhCCCHHHH--
Confidence 666 7888 99999999999999999999 444331 0121111110 00000 000 00 000 000011233
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccC
Q 003258 418 HISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFEN 488 (835)
Q Consensus 418 g~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n 488 (835)
+++++.++..+|+++|+|||+ |+.....+. +.. ..|.++++|||+.+...++++.+.+..
T Consensus 88 ---~~~la~aL~~~p~illlDEp~---D~~~~~~~l----~~~-~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 ---ADALRAALREDPDVIFVGEMR---DLETVETAL----RAA-ETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp ---HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH----HHH-HTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred ---HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH----HHH-ccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 677778888899999999999 887754333 333 458899999999887778887766543
No 95
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.30 E-value=2.5e-13 Score=158.23 Aligned_cols=154 Identities=15% Similarity=0.109 Sum_probs=93.6
Q ss_pred eeeeeecCCcee--ccce-eecCCceEEEEEcCCCCChhhHHhh--H-HhhhhhcccceeecCCCCCCchHHHHHHHHcC
Q 003258 330 GSLSKGISDFPV--PIDI-KVECETRVVVITGPNTGGKTASMKT--L-GLASLMSKAGLYLPAKNHPRLPWFDLILADIG 403 (835)
Q Consensus 330 ~~ls~~y~~~~v--~isl-~l~~g~~~~~I~GpNGsGKSTlLK~--i-Gli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig 403 (835)
+++.+.+++..+ ++++ .+++| ++++|+||||||||||+++ + |++.+- .-..++-... .... +......+|
T Consensus 16 ~~~~~~~~g~~~Ld~i~~G~i~~G-e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~-~g~i~v~g~~-~~~~-~~~~~~~~g 91 (525)
T 1tf7_A 16 QAIAKMRTMIEGFDDISHGGLPIG-RSTLVSGTSGTGKTLFSIQFLYNGIIEFD-EPGVFVTFEE-TPQD-IIKNARSFG 91 (525)
T ss_dssp SSCCEECCCCTTHHHHTTSSEETT-SEEEEEESTTSSHHHHHHHHHHHHHHHHC-CCEEEEESSS-CHHH-HHHHHGGGT
T ss_pred cccccccCCchhHHHhcCCCCCCC-eEEEEEcCCCCCHHHHHHHHHHHHHHhCC-CCEEEEEEeC-CHHH-HHHHHHHcC
Confidence 334443434333 8999 99999 9999999999999999999 3 555431 1112222111 1100 011111111
Q ss_pred Cc------------------ccccCCcccchHHHHHHHHHHHH-cCCCcEEEEeCCCC-----CCCHHhHHHHHHHHHHH
Q 003258 404 DH------------------QSLEQNLSTFSGHISRIVDILEL-VSRESLVLIDEIGS-----GTDPSEGVALATSILQY 459 (835)
Q Consensus 404 ~~------------------~~~~~~lstfSgg~~rl~~~~~l-a~~~~LlLLDEp~~-----glDp~~~~aL~~all~~ 459 (835)
.. .....-+..|.-+...-..+..+ ..+|.+|+||||++ ++|+..+..|.. ++..
T Consensus 92 ~~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~-ll~~ 170 (525)
T 1tf7_A 92 WDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFR-LVAR 170 (525)
T ss_dssp CCHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHH-HHHH
T ss_pred CChHHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHH-HHHH
Confidence 10 00111223333333211222222 35789999999997 468888888888 7778
Q ss_pred HhcCCcEEEEEecchhH----------HhhhcccccccC
Q 003258 460 LRDRVGLAVVTTHYADL----------SCLKDKDTRFEN 488 (835)
Q Consensus 460 l~~~~~~viitTH~~el----------~~~~~~~~~~~n 488 (835)
+.+.|+|+|++||+.+. ..+||+++.+.+
T Consensus 171 l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 171 LKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp HHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 88789999999999864 345999888876
No 96
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.29 E-value=2.5e-14 Score=155.86 Aligned_cols=152 Identities=7% Similarity=0.064 Sum_probs=100.1
Q ss_pred CCeEEEeeeeeecCCcee-cccee-----------------------ecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhc
Q 003258 324 NSEMTVGSLSKGISDFPV-PIDIK-----------------------VECETRVVVITGPNTGGKTASMKTL-GLASLMS 378 (835)
Q Consensus 324 ~~~l~~~~ls~~y~~~~v-~isl~-----------------------l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma 378 (835)
+++|.++||++.|+. .. .+++. +.+| .+++|+||||||||||+++| |++....
T Consensus 41 ~~~i~~~~v~~~y~p-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g-~ivgI~G~sGsGKSTL~~~L~gll~~~~ 118 (312)
T 3aez_A 41 GEQIDLLEVEEVYLP-LARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVP-FIIGVAGSVAVGKSTTARVLQALLARWD 118 (312)
T ss_dssp TCCCCHHHHHHTHHH-HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCC-EEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred CCeEEeeehhhhhhh-HHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCC-EEEEEECCCCchHHHHHHHHHhhccccC
Confidence 357889999999952 11 44433 6778 99999999999999999999 6665431
Q ss_pred ---ccceeecCCCCC---------------------CchHHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCc
Q 003258 379 ---KAGLYLPAKNHP---------------------RLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 433 (835)
Q Consensus 379 ---~~G~~vP~~~~~---------------------~i~~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~ 433 (835)
++ .++|++... ....+.+++..++ ....+..+.+||+||+ |+.++++++.+|+
T Consensus 119 G~~~v-~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ 196 (312)
T 3aez_A 119 HHPRV-DLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPD 196 (312)
T ss_dssp TCCCE-EEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCS
T ss_pred CCCeE-EEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCC
Confidence 12 244444310 0112445566666 3344567889999999 7888888999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhH--HhhhcccccccC
Q 003258 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL--SCLKDKDTRFEN 488 (835)
Q Consensus 434 LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el--~~~~~~~~~~~n 488 (835)
+||||||+...|+.. . .+.+.--.+|+++|+.++ ..+..+...+.+
T Consensus 197 ilIlDep~~~~d~~~-~--------~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 197 ILILEGLNVLQTGPT-L--------MVSDLFDFSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp EEEEECTTTTCCCSS-C--------CGGGGCSEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred EEEECCccccCCcch-H--------HHHHhcCcEEEEECCHHHHHHHHHHHHHHHHh
Confidence 999999999998622 0 112212245777777653 345555544443
No 97
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.29 E-value=8.3e-13 Score=150.16 Aligned_cols=157 Identities=10% Similarity=0.100 Sum_probs=111.3
Q ss_pred CeEEEeeeeeecC-Ccee--ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhh-------hc---------------
Q 003258 325 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS--------------- 378 (835)
Q Consensus 325 ~~l~~~~ls~~y~-~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------ma--------------- 378 (835)
.+++++++++.|+ +..+ ++ |.+.+| ++++|+|||||||||||++| |+... .+
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~G-q~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRG-QRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTT-CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCCceEEeee-EEecCC-CEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 3566789999997 4434 78 999999 99999999999999999999 44321 11
Q ss_pred -----ccceeecCCCCCCch---HHHH------HHHHcCCc-ccccCCcccchHHHHHHHHHHHHcCCCcEEEEeCCCCC
Q 003258 379 -----KAGLYLPAKNHPRLP---WFDL------ILADIGDH-QSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSG 443 (835)
Q Consensus 379 -----~~G~~vP~~~~~~i~---~~d~------i~~~ig~~-~~~~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~g 443 (835)
+.-.++++.....+. ..+. .+.+.+.. ..+-..++.||+|++|++++ +.+|++ |+|
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~~p~~------t~g 278 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IGEPPA------TKG 278 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TTCCCC------SSS
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hCCCcc------ccc
Confidence 112466654211111 1111 12221110 11223588999999888887 777777 999
Q ss_pred CCHHhHHHHHHHHHHHHhc---C-Cc-----EEEEEecchhHHhhhcccccccCCceeec
Q 003258 444 TDPSEGVALATSILQYLRD---R-VG-----LAVVTTHYADLSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 444 lDp~~~~aL~~all~~l~~---~-~~-----~viitTH~~el~~~~~~~~~~~n~~v~~~ 494 (835)
+||.....+.. +++.+.+ . |. |++++|||++ ..+|++...+.+|.+..+
T Consensus 279 lD~~~~~~l~~-ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 279 YPPSVFAKLPA-LVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLS 336 (438)
T ss_dssp CCTTHHHHHHH-HHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEEC
T ss_pred CCHHHHHHHHH-HHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEe
Confidence 99999999998 6666655 3 53 8999999998 788999999999988765
No 98
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.26 E-value=1.5e-12 Score=141.04 Aligned_cols=122 Identities=13% Similarity=0.088 Sum_probs=82.5
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhc------------------------cc-ceeecCCCCCCch--
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------------KA-GLYLPAKNHPRLP-- 393 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma------------------------~~-G~~vP~~~~~~i~-- 393 (835)
+++|.+.+| ++++|+|||||||||+++.| |++.... +. -.++|+......+
T Consensus 92 ~l~~~~~~g-~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 92 ELQLGFRKP-AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp SCCCCSSSC-EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred ccccccCCC-cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 678888899 99999999999999999999 5543210 00 1245554320222
Q ss_pred -HHHHHHH------------HcCCcccccCCcccchHHHHHHHHHHHHcCCCc--EEEEeCCCCCCCHHhHHHHHHHHHH
Q 003258 394 -WFDLILA------------DIGDHQSLEQNLSTFSGHISRIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQ 458 (835)
Q Consensus 394 -~~d~i~~------------~ig~~~~~~~~lstfSgg~~rl~~~~~la~~~~--LlLLDEp~~glDp~~~~aL~~all~ 458 (835)
.++.+.. .+|..+..++.+.+|| .+|++++++++.+|. +++|| ||+|+|+.... .
T Consensus 171 ~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS--kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~-------~ 240 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI--ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-------R 240 (302)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH--HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH-------H
T ss_pred HHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH--HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH-------H
Confidence 2344321 1233344455667788 458888899999999 99999 99999997542 2
Q ss_pred HHh-cCCcEEEEEecch
Q 003258 459 YLR-DRVGLAVVTTHYA 474 (835)
Q Consensus 459 ~l~-~~~~~viitTH~~ 474 (835)
.+. ..+.++|++||..
T Consensus 241 ~~~~~~g~t~iiiThlD 257 (302)
T 3b9q_A 241 EFNEVVGITGLILTKLD 257 (302)
T ss_dssp HHHHHTCCCEEEEECCS
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 233 4588999999953
No 99
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.22 E-value=2.1e-12 Score=128.40 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=71.6
Q ss_pred cceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCC-CchHHHHHHHHcCCcccccCCcccchHHHHH
Q 003258 343 IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP-RLPWFDLILADIGDHQSLEQNLSTFSGHISR 421 (835)
Q Consensus 343 isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~-~i~~~d~i~~~ig~~~~~~~~lstfSgg~~r 421 (835)
-++.+.+| +.++|+||||+|||||++++ ++...|..+.. .+-.+..++..+. ..++.+...
T Consensus 31 ~~~~~~~g-~~~~l~G~~G~GKTtL~~~i--------~~~~~~~~g~~~~~~~~~~~~~~~~---------~~~~~~~~~ 92 (180)
T 3ec2_A 31 HNFNPEEG-KGLTFVGSPGVGKTHLAVAT--------LKAIYEKKGIRGYFFDTKDLIFRLK---------HLMDEGKDT 92 (180)
T ss_dssp HSCCGGGC-CEEEECCSSSSSHHHHHHHH--------HHHHHHHSCCCCCEEEHHHHHHHHH---------HHHHHTCCS
T ss_pred HhccccCC-CEEEEECCCCCCHHHHHHHH--------HHHHHHHcCCeEEEEEHHHHHHHHH---------HHhcCchHH
Confidence 35666778 89999999999999999999 44333333311 1111222222110 001111000
Q ss_pred HHHHHHHcCCCcEEEEeCCCC-CCCHHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 003258 422 IVDILELVSRESLVLIDEIGS-GTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 422 l~~~~~la~~~~LlLLDEp~~-glDp~~~~aL~~all~~l~~~~~~viitTH~~ 474 (835)
.++....+|++|+||||++ ++|+.....+.. +++...+.+.++|+|||+.
T Consensus 93 --~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~-ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 93 --KFLKTVLNSPVLVLDDLGSERLSDWQRELISY-IITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp --HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHH-HHHHHHHTTCEEEEECCCC
T ss_pred --HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHH-HHHHHHHcCCCEEEEcCCC
Confidence 1223345899999999995 999998888877 7777777789999999985
No 100
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.22 E-value=4.9e-12 Score=139.99 Aligned_cols=122 Identities=14% Similarity=0.112 Sum_probs=83.3
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhc------------------------ccc-eeecCCCCCCch--
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------------KAG-LYLPAKNHPRLP-- 393 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma------------------------~~G-~~vP~~~~~~i~-- 393 (835)
+++|.+.+| ++++|+|||||||||+++.| |++.... +.+ .++|+......+
T Consensus 149 ~l~l~~~~g-~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 149 ELQLGFRKP-AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp SCCCCSSSS-EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CcceecCCC-eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 678888899 99999999999999999999 5543210 011 245554320222
Q ss_pred -HHHHHHH------------HcCCcccccCCcccchHHHHHHHHHHHHcCCCc--EEEEeCCCCCCCHHhHHHHHHHHHH
Q 003258 394 -WFDLILA------------DIGDHQSLEQNLSTFSGHISRIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQ 458 (835)
Q Consensus 394 -~~d~i~~------------~ig~~~~~~~~lstfSgg~~rl~~~~~la~~~~--LlLLDEp~~glDp~~~~aL~~all~ 458 (835)
.++.+.. .+|..+..++.+++|| .+|++++++++.+|. +++|| ||+|+|+.... .
T Consensus 228 tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS--kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~-------~ 297 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI--ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-------R 297 (359)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH--HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH-------H
T ss_pred hHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH--HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH-------H
Confidence 2344321 1233344455667788 558888999999999 99999 99999998542 2
Q ss_pred HHh-cCCcEEEEEecch
Q 003258 459 YLR-DRVGLAVVTTHYA 474 (835)
Q Consensus 459 ~l~-~~~~~viitTH~~ 474 (835)
.+. ..+.++|++||..
T Consensus 298 ~~~~~~g~t~iiiThlD 314 (359)
T 2og2_A 298 EFNEVVGITGLILTKLD 314 (359)
T ss_dssp HHHHHTCCCEEEEESCT
T ss_pred HHHHhcCCeEEEEecCc
Confidence 233 3588999999953
No 101
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.18 E-value=1e-10 Score=119.11 Aligned_cols=140 Identities=19% Similarity=0.121 Sum_probs=85.6
Q ss_pred eecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcc-c-cc-CCcccchHHH--H
Q 003258 346 KVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ-S-LE-QNLSTFSGHI--S 420 (835)
Q Consensus 346 ~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~-~-~~-~~lstfSgg~--~ 420 (835)
-+.+| ++++|+||||+|||||++++.. ......+|+..........+.+++..++... . .+ -.+...++++ +
T Consensus 16 gi~~G-~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 16 GFAPG-VLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp SBCTT-SEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCcCC-EEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 36788 8999999999999999999944 2222234554443222223444444444321 0 01 1223333332 2
Q ss_pred -HHHHHHHHcCC-CcEEEEeCCCCCCCHHhH--------HHHHHHHHHHHhcCCcEEEEEecchh--------------H
Q 003258 421 -RIVDILELVSR-ESLVLIDEIGSGTDPSEG--------VALATSILQYLRDRVGLAVVTTHYAD--------------L 476 (835)
Q Consensus 421 -rl~~~~~la~~-~~LlLLDEp~~glDp~~~--------~aL~~all~~l~~~~~~viitTH~~e--------------l 476 (835)
.+..+.+++.+ |++|++|||++++|+... ..+...+.....+.++++|+++|... +
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~ 172 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTL 172 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHH
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcce
Confidence 46666777765 999999999999998432 33444344444455889999999853 3
Q ss_pred HhhhcccccccC
Q 003258 477 SCLKDKDTRFEN 488 (835)
Q Consensus 477 ~~~~~~~~~~~n 488 (835)
..+|+.++.+..
T Consensus 173 ~~~~d~vi~l~~ 184 (220)
T 2cvh_A 173 GYRCKDILRLDK 184 (220)
T ss_dssp HHTSSEEEEEEE
T ss_pred eecCcEEEEEEE
Confidence 456776666543
No 102
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.14 E-value=6.7e-11 Score=144.64 Aligned_cols=97 Identities=25% Similarity=0.284 Sum_probs=84.1
Q ss_pred HHHHHcCCcc-cccCCcccchHHHH-HHHHHHHHcCCCc--EEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEec
Q 003258 397 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH 472 (835)
Q Consensus 397 ~i~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~~~~--LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH 472 (835)
..+..+|+.. ..++.+++|||||+ |+.+|++++.+|+ ++||||||+||||.+...|.. ++..+.+.|.|||++||
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~-~L~~L~~~G~TvivVtH 524 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK-TLKKLRDLGNTVIVVEH 524 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHH-HHHHTTTTTCEEEEECC
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHH-HHHHHHhcCCEEEEEeC
Confidence 4567788875 47899999999999 8999999998777 999999999999999999999 77788888999999999
Q ss_pred chhHHhhhcccccc------cCCceeec
Q 003258 473 YADLSCLKDKDTRF------ENAATEFS 494 (835)
Q Consensus 473 ~~el~~~~~~~~~~------~n~~v~~~ 494 (835)
|+++...||+++.+ .+|.+.+.
T Consensus 525 d~~~~~~aD~ii~lgpgag~~~G~iv~~ 552 (916)
T 3pih_A 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQ 552 (916)
T ss_dssp CHHHHHTCSEEEEEESSSGGGCSEEEEE
T ss_pred CHHHHHhCCEEEEEcCCcccCCCEEEEe
Confidence 99977779999988 56666543
No 103
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.13 E-value=1.1e-12 Score=135.31 Aligned_cols=123 Identities=11% Similarity=-0.041 Sum_probs=75.8
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhccc--ce----------------eecCCCCCCchHHHHH----
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKA--GL----------------YLPAKNHPRLPWFDLI---- 398 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma~~--G~----------------~vP~~~~~~i~~~d~i---- 398 (835)
++||++.+| ++++|+||||||||||+|+| |+. . +.. |. ++|++ ...|...
T Consensus 15 ~isl~i~~G-~~~~lvGpsGsGKSTLl~~L~g~~-p-G~i~~g~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~ 87 (218)
T 1z6g_A 15 VPRGSMNNI-YPLVICGPSGVGKGTLIKKLLNEF-P-NYFYFSVSCTTRKKREKEKEGVDYYFID----KTIFEDKLKNE 87 (218)
T ss_dssp -------CC-CCEEEECSTTSSHHHHHHHHHHHS-T-TTEEECCCEECSCCCSSCCBTTTBEECC----HHHHHHHHHTT
T ss_pred CCceecCCC-CEEEEECCCCCCHHHHHHHHHhhC-C-CcEEEeecccCCCCCcccccCCeEEECC----HHHHHHhhhcc
Confidence 789999999 99999999999999999999 655 2 111 10 11111 0112211
Q ss_pred -----------------------HHHcCCcccccCCcccchHHHH-HHHH-----HHHHcCCCcEEEEeCCCCCCCHHhH
Q 003258 399 -----------------------LADIGDHQSLEQNLSTFSGHIS-RIVD-----ILELVSRESLVLIDEIGSGTDPSEG 449 (835)
Q Consensus 399 -----------------------~~~ig~~~~~~~~lstfSgg~~-rl~~-----~~~la~~~~LlLLDEp~~glDp~~~ 449 (835)
+.... .. -.-..+|||++ |+++ ++.++.+|++++||||++++|....
T Consensus 88 ~~l~~~~~~~~~~g~~~~~i~~~l~~~~---~~-il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~ 163 (218)
T 1z6g_A 88 DFLEYDNYANNFYGTLKSEYDKAKEQNK---IC-LFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQ 163 (218)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTC---EE-EEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCH
T ss_pred chhhhhhcccccCCCcHHHHHHHHhCCC---cE-EEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCH
Confidence 11100 00 01146799999 6776 5677889999999999999999887
Q ss_pred HHHHHHHHHHHhc------CCcEEEEEecchh
Q 003258 450 VALATSILQYLRD------RVGLAVVTTHYAD 475 (835)
Q Consensus 450 ~aL~~all~~l~~------~~~~viitTH~~e 475 (835)
..+...+.....+ ..+..|+++|+.+
T Consensus 164 ~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ 195 (218)
T 1z6g_A 164 EQIQKRMEQLNIELHEANLLNFNLSIINDDLT 195 (218)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH
T ss_pred HHHHHHHHHHHHHHHhhcccCCCEEEECCCHH
Confidence 7777755543322 4567888999865
No 104
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.11 E-value=1.4e-10 Score=141.30 Aligned_cols=95 Identities=23% Similarity=0.235 Sum_probs=83.7
Q ss_pred HHHcCCcc-cccCCcccchHHHH-HHHHHHHHcCCC--cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 003258 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 399 ~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~~~--~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~ 474 (835)
+..+|+.. .+++.+++|||||+ |+.+|.+++.+| .++||||||+||||.+...|.. +++.|.+.|.|||++|||.
T Consensus 488 L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~-~L~~Lr~~G~TVIvVeHdl 566 (972)
T 2r6f_A 488 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA-TLKSMRDLGNTLIVVEHDE 566 (972)
T ss_dssp HHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHTTTCEEEEECCCH
T ss_pred hhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCH
Confidence 77889875 47999999999999 899999999874 8999999999999999999999 7788888899999999999
Q ss_pred hHHhhhcccccc------cCCceeec
Q 003258 475 DLSCLKDKDTRF------ENAATEFS 494 (835)
Q Consensus 475 el~~~~~~~~~~------~n~~v~~~ 494 (835)
++...||+++.+ .+|.+.+.
T Consensus 567 ~~i~~ADrIi~LgpgaG~~gG~iv~~ 592 (972)
T 2r6f_A 567 DTMLAADYLIDIGPGAGIHGGEVVAA 592 (972)
T ss_dssp HHHHSCSEEEEECSSSGGGCCSEEEE
T ss_pred HHHHhCCEEEEeCCCccCCCCEEEEe
Confidence 876789999988 56666654
No 105
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.10 E-value=2.8e-12 Score=136.87 Aligned_cols=114 Identities=18% Similarity=0.072 Sum_probs=70.2
Q ss_pred EEEEEcCCCCChhhHHhhH-Hhhhhhc----------------ccceeecCCCCC--CchHHH--------------HHH
Q 003258 353 VVVITGPNTGGKTASMKTL-GLASLMS----------------KAGLYLPAKNHP--RLPWFD--------------LIL 399 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i-Gli~~ma----------------~~G~~vP~~~~~--~i~~~d--------------~i~ 399 (835)
.++|+||||+|||||||+| |+..+-. +.-.++|+.... .+.+++ ..+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 4789999999999999999 5543310 111233333210 011100 011
Q ss_pred HHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003258 400 ADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (835)
Q Consensus 400 ~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e 475 (835)
..+...+..+....+|||||+ |+.++++++. |++||||+.|+||.+.. +++.+.+. .++|++.|..+
T Consensus 84 ~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~-----~l~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 84 EKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE-----FMKHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH-----HHHHHHTT-SEEEEEETTGG
T ss_pred HHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH-----HHHHHHhc-CcEEEEEeccc
Confidence 112223444566789999998 7777776553 99999999999998832 44556665 77777777654
No 106
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.09 E-value=1.6e-10 Score=141.13 Aligned_cols=95 Identities=26% Similarity=0.224 Sum_probs=82.7
Q ss_pred HHHcCCcc-cccCCcccchHHHH-HHHHHHHHcCC--CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 003258 399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 399 ~~~ig~~~-~~~~~lstfSgg~~-rl~~~~~la~~--~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~ 474 (835)
+..+|+.. .+++.+++|||||+ |+.+|.+++.+ |.|+||||||+||||.+...|.. ++..|.+.|.|||++|||.
T Consensus 505 L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~-~L~~Lr~~G~TVIvVeHdl 583 (993)
T 2ygr_A 505 LLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIE-TLTRLRDLGNTLIVVEHDE 583 (993)
T ss_dssp HHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECCCH
T ss_pred HhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHH-HHHHHHHcCCEEEEECCCH
Confidence 67788875 47999999999999 89999999988 58999999999999999999999 7777888899999999999
Q ss_pred hHHhhhcccccc------cCCceeec
Q 003258 475 DLSCLKDKDTRF------ENAATEFS 494 (835)
Q Consensus 475 el~~~~~~~~~~------~n~~v~~~ 494 (835)
++...||+++.+ .+|.+.+.
T Consensus 584 ~~i~~ADrIi~Lgp~aG~~gG~iv~~ 609 (993)
T 2ygr_A 584 DTIEHADWIVDIGPGAGEHGGRIVHS 609 (993)
T ss_dssp HHHHTCSEEEEECSSSGGGCCSCCEE
T ss_pred HHHHhCCEEEEecCccccCCCEEEEe
Confidence 876789999888 45655543
No 107
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.09 E-value=2e-10 Score=139.46 Aligned_cols=96 Identities=22% Similarity=0.212 Sum_probs=84.0
Q ss_pred HHHHcCCccc-ccCCcccchHHHH-HHHHHHHHcCCC--cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 003258 398 ILADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 398 i~~~ig~~~~-~~~~lstfSgg~~-rl~~~~~la~~~--~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~ 473 (835)
.+..+|+... +++.+++|||||+ |+.+|.+++.+| .|+||||||+||||.+...|.. ++..|.+.|.|||++||+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~-~l~~L~~~G~TVIvVeHd 440 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLS-ALENLKRGGNSLFVVEHD 440 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHTTTCEEEEECCC
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHH-HHHHHHHcCCEEEEEcCC
Confidence 4678898754 7999999999999 899999999998 4999999999999999999999 788888889999999999
Q ss_pred hhHHhhhcccccc------cCCceeec
Q 003258 474 ADLSCLKDKDTRF------ENAATEFS 494 (835)
Q Consensus 474 ~el~~~~~~~~~~------~n~~v~~~ 494 (835)
+++...||+++.+ .+|.+.+.
T Consensus 441 l~~l~~aD~ii~lgpgaG~~~G~iv~~ 467 (842)
T 2vf7_A 441 LDVIRRADWLVDVGPEAGEKGGEILYS 467 (842)
T ss_dssp HHHHTTCSEEEEECSSSGGGCCSEEEE
T ss_pred HHHHHhCCEEEEeCCCcccCCCEEEEe
Confidence 9977789999888 45555543
No 108
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.07 E-value=2.2e-11 Score=134.81 Aligned_cols=124 Identities=15% Similarity=0.113 Sum_probs=73.6
Q ss_pred eecCCceEEEEEcCCCCChhhHHhhH-HhhhhhcccceeecCCCCCCchHHHHHHHHcC-Ccc-cccCCcccchHHHHHH
Q 003258 346 KVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIG-DHQ-SLEQNLSTFSGHISRI 422 (835)
Q Consensus 346 ~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig-~~~-~~~~~lstfSgg~~rl 422 (835)
...++ .+++|+|||||||||||+++ |++..-. .|..+-......+.. .. ..+ ..+ ......-+|..
T Consensus 119 ~~~~~-g~i~I~GptGSGKTTlL~~l~g~~~~~~-~~~i~t~ed~~e~~~-~~---~~~~v~q~~~~~~~~~~~~----- 187 (356)
T 3jvv_A 119 SDVPR-GLVLVTGPTGSGKSTTLAAMLDYLNNTK-YHHILTIEDPIEFVH-ES---KKCLVNQREVHRDTLGFSE----- 187 (356)
T ss_dssp HHCSS-EEEEEECSTTSCHHHHHHHHHHHHHHHC-CCEEEEEESSCCSCC-CC---SSSEEEEEEBTTTBSCHHH-----
T ss_pred HhCCC-CEEEEECCCCCCHHHHHHHHHhcccCCC-CcEEEEccCcHHhhh-hc---cccceeeeeeccccCCHHH-----
Confidence 45566 79999999999999999998 5554321 111111011111100 00 000 000 01111122322
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccC
Q 003258 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFEN 488 (835)
Q Consensus 423 ~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~~n 488 (835)
+++.++..+|+++|+|||+ |+.....+.. +...|.++|+|||+.+....+++.+.+..
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~-----~~~~G~~vl~t~H~~~~~~~~dRli~l~~ 245 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALT-----AAETGHLVFGTLHTTSAAKTIDRVVDVFP 245 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHH-----HHHTTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHH-----HHhcCCEEEEEEccChHHHHHHHHhhhcC
Confidence 6778889999999999998 6554333322 34458999999999887788888777644
No 109
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.07 E-value=4e-10 Score=124.55 Aligned_cols=131 Identities=16% Similarity=0.160 Sum_probs=79.8
Q ss_pred ceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhccc----c--eeecCCCCCCchHHHHHHHHcCCcc-cccCCc---
Q 003258 344 DIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKA----G--LYLPAKNHPRLPWFDLILADIGDHQ-SLEQNL--- 412 (835)
Q Consensus 344 sl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma~~----G--~~vP~~~~~~i~~~d~i~~~ig~~~-~~~~~l--- 412 (835)
...+++| +++.|+||||+|||||++++ |.++.-... | +|+-........-+..++...+... .+..++
T Consensus 125 ~ggi~~G-~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~ 203 (349)
T 1pzn_A 125 GGGIETQ-AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVA 203 (349)
T ss_dssp TSSEESS-EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEE
T ss_pred cCCCCCC-eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEE
Confidence 4678899 99999999999999999999 333211111 2 4554443211122333444444321 111111
Q ss_pred ccc-hHHHH-HHHHHHHHc-------CCCcEEEEeCCCCCCCHHh------------HHHHHHHHHHHHhcCCcEEEEEe
Q 003258 413 STF-SGHIS-RIVDILELV-------SRESLVLIDEIGSGTDPSE------------GVALATSILQYLRDRVGLAVVTT 471 (835)
Q Consensus 413 stf-Sgg~~-rl~~~~~la-------~~~~LlLLDEp~~glDp~~------------~~aL~~all~~l~~~~~~viitT 471 (835)
..+ |.++. .+..+..++ .+|++||+|||++++|+.. ...+...+.....+.++++|+++
T Consensus 204 ~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~ 283 (349)
T 1pzn_A 204 RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN 283 (349)
T ss_dssp ECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEc
Confidence 112 45555 566665555 6899999999999999862 23344434444455689999999
Q ss_pred cchh
Q 003258 472 HYAD 475 (835)
Q Consensus 472 H~~e 475 (835)
|...
T Consensus 284 h~~~ 287 (349)
T 1pzn_A 284 QVQA 287 (349)
T ss_dssp ECC-
T ss_pred cccc
Confidence 9864
No 110
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.05 E-value=3.4e-11 Score=126.10 Aligned_cols=122 Identities=15% Similarity=0.110 Sum_probs=72.8
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhh-----cccceeecCCCC-CCchHH-------------------
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----SKAGLYLPAKNH-PRLPWF------------------- 395 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~m-----a~~G~~vP~~~~-~~i~~~------------------- 395 (835)
++||++.+| .+++|+|||||||||++|+| |++-.. ++.-.++|+... ..+...
T Consensus 17 ~isl~i~~g-~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 95 (245)
T 2jeo_A 17 NLYFQSMRP-FLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFD 95 (245)
T ss_dssp ------CCS-EEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGGBC
T ss_pred ceeccCCCC-EEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCccccc
Confidence 899999999 99999999999999999999 443110 111113444321 011111
Q ss_pred ----HHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEE
Q 003258 396 ----DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT 470 (835)
Q Consensus 396 ----d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viit 470 (835)
.+.+..+ .+.....+..||+|++ |+.. .+++.+|+++|||||....++. +. + + .+.+++++
T Consensus 96 ~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~----l~----~-~--~~~~i~v~ 161 (245)
T 2jeo_A 96 NDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE----IR----D-M--FHLRLFVD 161 (245)
T ss_dssp HHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----HH----T-T--CSEEEEEE
T ss_pred HHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH----HH----H-h--cCeEEEEE
Confidence 1222222 2234567788999998 6544 4567789999999988777653 21 1 1 37899999
Q ss_pred ecc-hhHHh
Q 003258 471 THY-ADLSC 478 (835)
Q Consensus 471 TH~-~el~~ 478 (835)
||+ ..+..
T Consensus 162 th~~~~~~r 170 (245)
T 2jeo_A 162 TDSDVRLSR 170 (245)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 997 34544
No 111
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.04 E-value=6.1e-13 Score=135.50 Aligned_cols=123 Identities=14% Similarity=0.061 Sum_probs=86.4
Q ss_pred cCCceEEEEEcCCCCChhhHHhhH-HhhhhhcccceeecCCCC----CCc------------------hHHHHHHHHcCC
Q 003258 348 ECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNH----PRL------------------PWFDLILADIGD 404 (835)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma~~G~~vP~~~~----~~i------------------~~~d~i~~~ig~ 404 (835)
.+| .+++|+||||||||||+|+| |++.. +. .++|++.. ..+ ..+.+++..++.
T Consensus 4 ~~~-~~i~i~G~~GsGKSTl~~~l~~~~~~--~i-~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (211)
T 3asz_A 4 PKP-FVIGIAGGTASGKTTLAQALARTLGE--RV-ALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLR 79 (211)
T ss_dssp -CC-EEEEEEESTTSSHHHHHHHHHHHHGG--GE-EEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHT
T ss_pred CCc-EEEEEECCCCCCHHHHHHHHHHHhCC--Ce-EEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHc
Confidence 466 89999999999999999999 55431 11 23333321 011 123445566666
Q ss_pred cccccCCcccchHHHH-----HHHHHHHHcCCCcEEEEeCCCCC-------CCHHhHHHHHHHHHHHHhcCCcEEEEEec
Q 003258 405 HQSLEQNLSTFSGHIS-----RIVDILELVSRESLVLIDEIGSG-------TDPSEGVALATSILQYLRDRVGLAVVTTH 472 (835)
Q Consensus 405 ~~~~~~~lstfSgg~~-----rl~~~~~la~~~~LlLLDEp~~g-------lDp~~~~aL~~all~~l~~~~~~viitTH 472 (835)
.+.+..+...+|+|++ ++..+..++.+|.++++|||+++ +|+.....+...+.+...++|.++++++|
T Consensus 80 ~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~ 159 (211)
T 3asz_A 80 GLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA 159 (211)
T ss_dssp TCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 6777778889999874 33444556677888888999999 89998888888666655667888888898
Q ss_pred ch
Q 003258 473 YA 474 (835)
Q Consensus 473 ~~ 474 (835)
+.
T Consensus 160 ~~ 161 (211)
T 3asz_A 160 QY 161 (211)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 112
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.03 E-value=1.7e-11 Score=123.89 Aligned_cols=129 Identities=14% Similarity=0.041 Sum_probs=73.8
Q ss_pred eEEEEEcCCCCChhhHHhhH-Hhhhhhcccc------------------eeecCCCCCCchHHHHHHHHcCC--c-----
Q 003258 352 RVVVITGPNTGGKTASMKTL-GLASLMSKAG------------------LYLPAKNHPRLPWFDLILADIGD--H----- 405 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i-Gli~~ma~~G------------------~~vP~~~~~~i~~~d~i~~~ig~--~----- 405 (835)
++++|+||||+|||||++++ |++. - .| .++++....... .+..++. .
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~-~--~Gi~~~g~~~~~~~~~~~~ig~~~~~~~g~~~----~l~~~~~~~~~~~~~ 74 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK-S--SGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRG----PLSRVGLEPPPGKRE 74 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH-H--TTCCCEEEECCEEETTSSEEEEEEEETTSCEE----EEEECCCCCCSSSCC
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc-c--CCEEEcCEecchhHhhhceEEEEEEeccccee----hhhcccccCCccccc
Confidence 67999999999999999999 5543 1 12 011111000000 0111111 0
Q ss_pred ccccCCcccchHHHH-HHHHHH----HHcCCCcEEEEeC--CCCCCCHHhHHHHHHHHHHHHhcCCcEEE---EEecchh
Q 003258 406 QSLEQNLSTFSGHIS-RIVDIL----ELVSRESLVLIDE--IGSGTDPSEGVALATSILQYLRDRVGLAV---VTTHYAD 475 (835)
Q Consensus 406 ~~~~~~lstfSgg~~-rl~~~~----~la~~~~LlLLDE--p~~glDp~~~~aL~~all~~l~~~~~~vi---itTH~~e 475 (835)
..+.+....+|++++ .+..+. +.+.+|++||||| |+..+|+....+|.. .+.....++| .+||+..
T Consensus 75 ~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~----~l~~~~~~ilgti~vsh~~~ 150 (189)
T 2i3b_A 75 CRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQ----TLSTPGTIILGTIPVPKGKP 150 (189)
T ss_dssp EESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHH----HHHCSSCCEEEECCCCCSSC
T ss_pred cccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHH----HHhCCCcEEEEEeecCCCCc
Confidence 134455667999988 443332 3578999999999 787788875555544 3333333342 3348864
Q ss_pred HHhhhcccccccCCcee
Q 003258 476 LSCLKDKDTRFENAATE 492 (835)
Q Consensus 476 l~~~~~~~~~~~n~~v~ 492 (835)
..+.+++..+.++.+.
T Consensus 151 -~~~vd~i~~~~~~~i~ 166 (189)
T 2i3b_A 151 -LALVEEIRNRKDVKVF 166 (189)
T ss_dssp -CTTHHHHHTTCCSEEE
T ss_pred -hHHHHHHeecCCcEEE
Confidence 3455555555666554
No 113
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.00 E-value=3e-10 Score=114.70 Aligned_cols=135 Identities=14% Similarity=0.017 Sum_probs=79.5
Q ss_pred eEEEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhH-Hhh-----hhh-c---cc-------ceeec-CC
Q 003258 326 EMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLA-----SLM-S---KA-------GLYLP-AK 387 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli-----~~m-a---~~-------G~~vP-~~ 387 (835)
+++++|+++.|+. .+-.+|.+.+| ..++|+|+||+|||||++.+ |.. ..- + .. +..+- ..
T Consensus 3 ~l~~~~~~~~~~~-~~l~~~~~~~~-~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~ 80 (210)
T 1pui_A 3 NLNYQQTHFVMSA-PDIRHLPSDTG-IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLP 80 (210)
T ss_dssp --------CEEEE-SSGGGSSCSCS-EEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECC
T ss_pred chhhhhhhheeec-CCHhHCCCCCC-cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECc
Confidence 5788999999974 34333888899 89999999999999999998 332 100 0 00 00000 00
Q ss_pred CCC-------------------------------------CchH----HHHHHHHcCCccc-ccCCcccchHHHH-H-HH
Q 003258 388 NHP-------------------------------------RLPW----FDLILADIGDHQS-LEQNLSTFSGHIS-R-IV 423 (835)
Q Consensus 388 ~~~-------------------------------------~i~~----~d~i~~~ig~~~~-~~~~lstfSgg~~-r-l~ 423 (835)
|.. .... +..++...+.... +..+...+|++++ + +.
T Consensus 81 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~ 160 (210)
T 1pui_A 81 GYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLN 160 (210)
T ss_dssp CCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHH
Confidence 000 0000 0111222333322 3566778999987 4 56
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc
Q 003258 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462 (835)
Q Consensus 424 ~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~ 462 (835)
.+.+++.++.++++|||++++|+.....+...+.+.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 161 MVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp HHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 778888888888999999999999999999866665443
No 114
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.99 E-value=1.2e-09 Score=112.78 Aligned_cols=127 Identities=14% Similarity=0.170 Sum_probs=71.4
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhhh-------cccceeecCCCCCCchHHHHHHHHcCCcc-----cccCCccc
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASLM-------SKAGLYLPAKNHPRLPWFDLILADIGDHQ-----SLEQNLST 414 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~m-------a~~G~~vP~~~~~~i~~~d~i~~~ig~~~-----~~~~~lst 414 (835)
+++| ++++|+||||+|||||++++.....+ ..-.+|+-........-+.+++..+|... .+. ....
T Consensus 21 i~~G-~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~ 98 (243)
T 1n0w_A 21 IETG-SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVA-YARA 98 (243)
T ss_dssp EETT-SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEE-EEEC
T ss_pred CcCC-eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeE-EEec
Confidence 5788 99999999999999999999443222 11223343332112222344555566431 111 1123
Q ss_pred chHHHH-H-HHHHHHH--cCCCcEEEEeCCCCCCCHH-------h-----HHHHHHHHHHHHhcCCcEEEEEecchh
Q 003258 415 FSGHIS-R-IVDILEL--VSRESLVLIDEIGSGTDPS-------E-----GVALATSILQYLRDRVGLAVVTTHYAD 475 (835)
Q Consensus 415 fSgg~~-r-l~~~~~l--a~~~~LlLLDEp~~glDp~-------~-----~~aL~~all~~l~~~~~~viitTH~~e 475 (835)
++..+. . +..+... ..+|++|++|||++.+|+. . ...+...+.....+.+++||+++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 444433 2 2223222 3689999999999999985 2 233444455555556899999999754
No 115
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.97 E-value=1.1e-09 Score=106.33 Aligned_cols=88 Identities=16% Similarity=0.237 Sum_probs=59.3
Q ss_pred CCceEEEEEcCCCCChhhHHhhHH-hhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHH
Q 003258 349 CETRVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILE 427 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~iG-li~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~ 427 (835)
+| +.++|+||||+|||||+++++ .+..-+....+++...... . .
T Consensus 35 ~g-~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~------------------~----------------~ 79 (149)
T 2kjq_A 35 HG-QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPL------------------T----------------D 79 (149)
T ss_dssp CC-SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCC------------------C----------------G
T ss_pred CC-CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhH------------------H----------------H
Confidence 67 899999999999999999993 3322111112333321000 0 2
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcE-EEEEecc
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL-AVVTTHY 473 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~-viitTH~ 473 (835)
++.++++|+||||+. +++.....|.. +++.+.+.|.+ +|+|||.
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~-li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFS-IFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHH-HHHHHHHHTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHH-HHHHHHHcCCcEEEEECCC
Confidence 245789999999998 55555666766 77777776777 8899986
No 116
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.92 E-value=8.6e-11 Score=127.23 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=19.2
Q ss_pred eeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 330 GSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 330 ~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+||++.|+++.+ +++|.+ +|+||||+||||||++|
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I-------~lvG~nG~GKSTLl~~L 38 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL-------MVVGESGLGKSTLINSL 38 (301)
T ss_dssp ----------------CEEE-------EEEEETTSSHHHHHHHH
T ss_pred CCCcceECCEEEEcCCCEEE-------EEECCCCCCHHHHHHHH
Confidence 478899988766 777765 89999999999999997
No 117
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.92 E-value=2.6e-10 Score=128.73 Aligned_cols=130 Identities=13% Similarity=0.115 Sum_probs=69.7
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC--CC---------
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH--PR--------- 391 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~--~~--------- 391 (835)
+++.++||++.|++..+ +++|++ +|+||||+||||||+++ +|...|..+. ..
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I-------~lvG~sGaGKSTLln~L--------~g~~~~~~~~~~~~~~~~~t~~~ 74 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL-------MVVGESGLGKSTLINSL--------FLTDLYSPEYPGPSHRIKKTVQV 74 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE-------EEECCTTSSHHHHHHHH--------TTCCCCCCCCCSCC-----CCEE
T ss_pred CcEEEEecceeECCEEEecCCCEEE-------EEECCCCCcHHHHHHHH--------hCCCCCCCCCCCcccCCccceee
Confidence 57889999999988765 777765 89999999999999999 4443321110 00
Q ss_pred --chH-H--HHHH------HHcCCccccc-----CCc-----ccchHHHH-HHHHHHHHcCCCc---EEEEeCCC-CCCC
Q 003258 392 --LPW-F--DLIL------ADIGDHQSLE-----QNL-----STFSGHIS-RIVDILELVSRES---LVLIDEIG-SGTD 445 (835)
Q Consensus 392 --i~~-~--d~i~------~~ig~~~~~~-----~~l-----stfSgg~~-rl~~~~~la~~~~---LlLLDEp~-~glD 445 (835)
+++ + ..++ ..+|...... ..+ ..|+.+++ ++.++++++.+|. +|++|||| .|+|
T Consensus 75 ~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~ 154 (418)
T 2qag_C 75 EQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK 154 (418)
T ss_dssp EEEECC------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCC
T ss_pred eeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCC
Confidence 000 0 0000 0001110000 000 12333333 3445566778888 99999999 6999
Q ss_pred HHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003258 446 PSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (835)
Q Consensus 446 p~~~~aL~~all~~l~~~~~~viitTH~~e 475 (835)
+.+. .++..+.. +..+|++.|..+
T Consensus 155 ~~d~-----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 155 PLDI-----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp HHHH-----HHHHHHTT-TSEEEEEEESTT
T ss_pred HHHH-----HHHHHHhc-cCcEEEEEEccc
Confidence 9873 24445554 566666666654
No 118
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.91 E-value=2.4e-09 Score=106.60 Aligned_cols=76 Identities=16% Similarity=0.113 Sum_probs=63.4
Q ss_pred cCCcccchHHHH-HHHHHHHHc----CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccc
Q 003258 409 EQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD 483 (835)
Q Consensus 409 ~~~lstfSgg~~-rl~~~~~la----~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~ 483 (835)
.+.++.|||||+ +++++++++ .+|+++|||||++|||+.....+.. ++..+.. +.++|++||+..+..+|+++
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~-~l~~~~~-~~~~ivith~~~~~~~ad~i 136 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVAD-LIKESSK-ESQFIVITLRDVMMANADKI 136 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTT-TSEEEEECSCHHHHTTCSEE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHH-HHHHhcc-CCEEEEEEecHHHHHhCCEE
Confidence 567889999999 788888875 5679999999999999999999998 5555554 46899999998877888888
Q ss_pred ccc
Q 003258 484 TRF 486 (835)
Q Consensus 484 ~~~ 486 (835)
+.+
T Consensus 137 ~~v 139 (173)
T 3kta_B 137 IGV 139 (173)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 119
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.90 E-value=2.9e-10 Score=134.47 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=37.3
Q ss_pred CCCcEEEEeCC------CCCCCHHhHHHHHHHHHHHHhcC-CcEEEEEecchhH
Q 003258 430 SRESLVLIDEI------GSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADL 476 (835)
Q Consensus 430 ~~~~LlLLDEp------~~glDp~~~~aL~~all~~l~~~-~~~viitTH~~el 476 (835)
..|+|+|+||| |+|+|+.....+...+.+++.+. +.+++++||+.++
T Consensus 145 ~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 145 DVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI 198 (608)
T ss_dssp SSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT
T ss_pred CCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh
Confidence 46899999999 99999999999988666655554 5678999999763
No 120
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.88 E-value=3.2e-09 Score=119.67 Aligned_cols=146 Identities=14% Similarity=0.134 Sum_probs=86.3
Q ss_pred EEEeeeeeecCCcee-ccceeecCCceE--EEEEcCCCCChhhHHhhH-Hhhhh---hc--------ccceeecCCCCC-
Q 003258 327 MTVGSLSKGISDFPV-PIDIKVECETRV--VVITGPNTGGKTASMKTL-GLASL---MS--------KAGLYLPAKNHP- 390 (835)
Q Consensus 327 l~~~~ls~~y~~~~v-~isl~l~~g~~~--~~I~GpNGsGKSTlLK~i-Gli~~---ma--------~~G~~vP~~~~~- 390 (835)
+++.+ +++|++.++ ++|+++.+| .+ ++|+||||+||||||++| |+... .. ....++|+....
T Consensus 17 l~~~~-~~~y~~~~L~~vsl~i~~G-ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 94 (427)
T 2qag_B 17 VPLAG-HVGFDSLPDQLVNKSVSQG-FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVR 94 (427)
T ss_dssp CCCCC-CC-CC--CHHHHHHSCC-C-CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CE
T ss_pred EEEee-EEEECCeecCCCceEecCC-CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccc
Confidence 44555 778876556 899999999 89 999999999999999999 54210 00 111234443210
Q ss_pred -------------Cch--------------HHHHHHHHc-CCccc----ccCC----c---ccchHHHH--HHHHHHHHc
Q 003258 391 -------------RLP--------------WFDLILADI-GDHQS----LEQN----L---STFSGHIS--RIVDILELV 429 (835)
Q Consensus 391 -------------~i~--------------~~d~i~~~i-g~~~~----~~~~----l---stfSgg~~--rl~~~~~la 429 (835)
.+. -++.++... +.... .+.. + ...+.+.. .+.++..+.
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~ 174 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD 174 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 100 012223332 32211 1111 1 11111222 356666667
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 003258 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~ 474 (835)
.+.++|++|+|+..+.+.+...+...+.+.+...|..|+.+|.+.
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 889999999999999999999999877777888888888888663
No 121
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.84 E-value=4.9e-10 Score=124.89 Aligned_cols=121 Identities=12% Similarity=0.152 Sum_probs=71.8
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhH-HhhhhhcccceeecCCCCCCchHHHHHHHHcC-Ccc-cccCCcccchHHHHHHH
Q 003258 347 VECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIG-DHQ-SLEQNLSTFSGHISRIV 423 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig-~~~-~~~~~lstfSgg~~rl~ 423 (835)
+.+| .+++|+|||||||||+|+++ |++..- ..|..+-......+.+ . ..++ ..| .+.....+|++ .
T Consensus 133 ~~~g-~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e~~~-~---~~~~~v~Q~~~g~~~~~~~~-----~ 201 (372)
T 2ewv_A 133 HRKM-GLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEYVF-K---HKKSIVNQREVGEDTKSFAD-----A 201 (372)
T ss_dssp TSSS-EEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCCSCC-C---CSSSEEEEEEBTTTBSCSHH-----H
T ss_pred hcCC-CEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHhhhh-c---cCceEEEeeecCCCHHHHHH-----H
Confidence 6778 89999999999999999999 444332 0121111111111100 0 0000 001 01113456643 4
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccc
Q 003258 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 486 (835)
Q Consensus 424 ~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~~~ 486 (835)
+..++..+|+++++|||+ |+..... +++.. ..|.++++|+|+.+...++++...+
T Consensus 202 l~~~L~~~pd~illdE~~---d~e~~~~----~l~~~-~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 202 LRAALREDPDVIFVGEMR---DLETVET----ALRAA-ETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp HHHHTTSCCSEEEESCCC---SHHHHHH----HHHHH-TTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred HHHHhhhCcCEEEECCCC---CHHHHHH----HHHHH-hcCCEEEEEECcchHHHHHHHHHHh
Confidence 556667899999999998 7655332 23333 4578999999998877777776554
No 122
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.83 E-value=1.9e-09 Score=125.10 Aligned_cols=79 Identities=25% Similarity=0.314 Sum_probs=70.2
Q ss_pred cCCcccc-hHHHH-HHHHHHHHcCCC--cEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccc
Q 003258 409 EQNLSTF-SGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 484 (835)
Q Consensus 409 ~~~lstf-Sgg~~-rl~~~~~la~~~--~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~~ 484 (835)
.++++.| ||||+ |++++++++.+| ++|||||||+|+|+.....+.. ++..+.+ +.+||++||++++..+|++++
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~-~l~~~~~-~~~vi~itH~~~~~~~~d~~~ 468 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRLAD-TRQVLVVTHLAQIAARAHHHY 468 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHH-HHHHHHH-HSEEEEECCCHHHHHHSSEEE
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHH-HHHHHhC-CCEEEEEecCHHHHHhCCEEE
Confidence 4778888 99999 899999999999 9999999999999999999999 5556666 789999999999888899998
Q ss_pred cccCC
Q 003258 485 RFENA 489 (835)
Q Consensus 485 ~~~n~ 489 (835)
.+.++
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 88654
No 123
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.82 E-value=3e-10 Score=126.11 Aligned_cols=144 Identities=10% Similarity=-0.027 Sum_probs=80.0
Q ss_pred ccceeecC--CceEEEEEcCCCCChhhHHhhH-Hhhhhhc--ccce-eecC--CC-CCC--chHHHHHH---------H-
Q 003258 342 PIDIKVEC--ETRVVVITGPNTGGKTASMKTL-GLASLMS--KAGL-YLPA--KN-HPR--LPWFDLIL---------A- 400 (835)
Q Consensus 342 ~isl~l~~--g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma--~~G~-~vP~--~~-~~~--i~~~d~i~---------~- 400 (835)
.+++.+.+ + +.++|+||||||||||+|+| |++.+-. ..|. +++. .+ ... ..-+.+|. .
T Consensus 160 ~v~~~v~~~lg-~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~~ 238 (365)
T 1lw7_A 160 FIPKEARPFFA-KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYAV 238 (365)
T ss_dssp GSCTTTGGGTC-EEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHhhh-CeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHH
Confidence 46777788 8 89999999999999999999 5543321 0011 1100 00 000 00011110 0
Q ss_pred Hc------CCcccccCCcccchHHHH-HHHHHHH-HcCCCcEEEEeC---CC------CCCCHHhHHHHHHHHHHHHhcC
Q 003258 401 DI------GDHQSLEQNLSTFSGHIS-RIVDILE-LVSRESLVLIDE---IG------SGTDPSEGVALATSILQYLRDR 463 (835)
Q Consensus 401 ~i------g~~~~~~~~lstfSgg~~-rl~~~~~-la~~~~LlLLDE---p~------~glDp~~~~aL~~all~~l~~~ 463 (835)
.+ ++.+.....+...|++.+ +..++.. ...+|+++|||| |+ .++|+..+..++.++.+.+.+.
T Consensus 239 t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~ 318 (365)
T 1lw7_A 239 RHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKY 318 (365)
T ss_dssp HHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGG
T ss_pred hccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHc
Confidence 00 011111112223444444 3333332 346899999999 65 5889999999999777666666
Q ss_pred CcEEEEEecchhHHhhhcccccc
Q 003258 464 VGLAVVTTHYADLSCLKDKDTRF 486 (835)
Q Consensus 464 ~~~viitTH~~el~~~~~~~~~~ 486 (835)
+.++|++||......+++....+
T Consensus 319 ~~~ililde~~~~~r~~~~i~~i 341 (365)
T 1lw7_A 319 KVPYIEIESPSYLDRYNQVKAVI 341 (365)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCHHHHHHHHHHHH
Confidence 88999999876566666555443
No 124
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.70 E-value=2.7e-09 Score=115.62 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=65.7
Q ss_pred CCceEEEEEcCCCCChhhHHhhH-Hhhhhhc------------------------ccc-eeecCCCCCCch---HHHHHH
Q 003258 349 CETRVVVITGPNTGGKTASMKTL-GLASLMS------------------------KAG-LYLPAKNHPRLP---WFDLIL 399 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma------------------------~~G-~~vP~~~~~~i~---~~d~i~ 399 (835)
+| ++++|+|||||||||+++.+ |++.... +.+ .++++... ..+ .++.+.
T Consensus 101 ~g-~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KG-RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG-TDSAALAYDAVQ 178 (304)
T ss_dssp SS-SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT-CCHHHHHHHHHH
T ss_pred CC-eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC-CCHHHHHHHHHH
Confidence 46 89999999999999999999 4543210 011 13444331 122 233332
Q ss_pred H--Hc----------CCcccccCCcccchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEE
Q 003258 400 A--DI----------GDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA 467 (835)
Q Consensus 400 ~--~i----------g~~~~~~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~v 467 (835)
. .- |..+.....++.|| .++++++++++.+|..++| .+|+..+..+...+..+....+.++
T Consensus 179 ~~~~~~~d~~llDt~G~~~~~~~~~~eLs--~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~ 251 (304)
T 1rj9_A 179 AMKARGYDLLFVDTAGRLHTKHNLMEELK--KVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTG 251 (304)
T ss_dssp HHHHHTCSEEEECCCCCCTTCHHHHHHHH--HHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSE
T ss_pred HHHhCCCCEEEecCCCCCCchHHHHHHHH--HHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcE
Confidence 1 00 11111122334444 3377888999999994443 4444444444442333223347899
Q ss_pred EEEecchh
Q 003258 468 VVTTHYAD 475 (835)
Q Consensus 468 iitTH~~e 475 (835)
|++||+.+
T Consensus 252 iivTh~d~ 259 (304)
T 1rj9_A 252 VIVTKLDG 259 (304)
T ss_dssp EEEECTTS
T ss_pred EEEECCcc
Confidence 99999854
No 125
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.68 E-value=1.1e-08 Score=105.67 Aligned_cols=116 Identities=12% Similarity=0.081 Sum_probs=62.2
Q ss_pred eeecCCceEEEEEcCCCCChhhHHhhH-Hhhhhhcccce-ee----cCCCC-CCch-------HHHHHHHHcCCccccc-
Q 003258 345 IKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGL-YL----PAKNH-PRLP-------WFDLILADIGDHQSLE- 409 (835)
Q Consensus 345 l~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma~~G~-~v----P~~~~-~~i~-------~~d~i~~~ig~~~~~~- 409 (835)
-..++| ++++|+||||||||||+|+| |+..+-.-.|. .+ |..+. ..++ .|......-...+.+.
T Consensus 11 ~~~~~G-~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQG-TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CC-CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCC-cEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 356788 99999999999999999999 55542000110 00 10000 0011 1222211000011111
Q ss_pred -CCcccchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhH
Q 003258 410 -QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL 476 (835)
Q Consensus 410 -~~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el 476 (835)
......+ + ..+...+..+.++||| +|+.....+...+. .+.+||++||+.+.
T Consensus 90 ~~~~yg~~---~--~~v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i~th~~~~ 142 (219)
T 1s96_A 90 FGNYYGTS---R--EAIEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFILPPSKIE 142 (219)
T ss_dssp TTEEEEEE---H--HHHHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEEECSSHHH
T ss_pred HhccCCCC---H--HHHHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEEECCCHHH
Confidence 1111112 1 1233445568999999 99999888877332 47899999999763
No 126
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.68 E-value=4.9e-08 Score=109.60 Aligned_cols=127 Identities=16% Similarity=0.124 Sum_probs=71.9
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhhhc-------ccceeecCCCCCCchHHHHHHHHcCCccc-ccC---Ccccc
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-------KAGLYLPAKNHPRLPWFDLILADIGDHQS-LEQ---NLSTF 415 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma-------~~G~~vP~~~~~~i~~~d~i~~~ig~~~~-~~~---~lstf 415 (835)
+.+| ++++|+||||+|||||++++.+...+. ...+|+-........-+..+...+|.... +.. ....+
T Consensus 175 I~~G-ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 175 VETG-SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp EETT-SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred cCCC-cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 5678 999999999999999999774333221 11234443332222224445666775321 100 11122
Q ss_pred hHH-HH-HHHHHHH--HcCCCcEEEEeCCCCCCCHHhH------------HHHHHHHHHHHhcCCcEEEEEecch
Q 003258 416 SGH-IS-RIVDILE--LVSRESLVLIDEIGSGTDPSEG------------VALATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 416 Sgg-~~-rl~~~~~--la~~~~LlLLDEp~~glDp~~~------------~aL~~all~~l~~~~~~viitTH~~ 474 (835)
+.. +. .+..+.. ...+|.+|++|||++.+|+... ..+...+.....+.+++||++||..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 332 22 2322322 2357999999999999987432 3445534444445689999999983
No 127
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.66 E-value=3.1e-08 Score=112.26 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=66.4
Q ss_pred cCCcccchHHHH-HHHHHHHHc----CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccc
Q 003258 409 EQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD 483 (835)
Q Consensus 409 ~~~lstfSgg~~-rl~~~~~la----~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~~ 483 (835)
.++++.|||||+ +++++++++ .+|+++|||||+++||+.....++. ++..+...+.++|++||+..+...|+++
T Consensus 328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~~ii~th~~~~~~~~d~~ 406 (430)
T 1w1w_A 328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNPDLQFIVISLKNTMFEKSDAL 406 (430)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBTTBEEEEECSCHHHHTTCSEE
T ss_pred ccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHH-HHHHHhcCCCEEEEEECCHHHHHhCCEE
Confidence 466889999999 788888887 6899999999999999999999998 5555655578999999998877788888
Q ss_pred cccc
Q 003258 484 TRFE 487 (835)
Q Consensus 484 ~~~~ 487 (835)
+.+.
T Consensus 407 ~~~~ 410 (430)
T 1w1w_A 407 VGVY 410 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 128
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.65 E-value=4e-08 Score=107.58 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=34.2
Q ss_pred cCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003258 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (835)
Q Consensus 429 a~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e 475 (835)
..++.++|||||++ +|+....+|.. +++... .++++|++||+.+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~-~le~~~-~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRR-TMEKYS-KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHH-HHHHST-TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHH-HHHhhc-CCCEEEEEeCCHH
Confidence 45889999999999 99998888877 444433 3678999999964
No 129
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.62 E-value=2.5e-09 Score=104.92 Aligned_cols=55 Identities=13% Similarity=0.054 Sum_probs=45.8
Q ss_pred EeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCch
Q 003258 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP 393 (835)
Q Consensus 329 ~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~ 393 (835)
..++++.|++..+ ++||++.+| ++++|+||||||||||+|+| +|+. |.+|.+.++
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~G-e~v~L~G~nGaGKTTLlr~l--------~g~l-~~~G~V~~~ 66 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKA-IMVYLNGDLGAGKTTLTRGM--------LQGI-GHQGNVKSP 66 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSC-EEEEEECSTTSSHHHHHHHH--------HHHT-TCCSCCCCC
T ss_pred CHHHHHHHHHHHHHhccccccCCC-CEEEEECCCCCCHHHHHHHH--------HHhC-CCCCeEEEC
Confidence 3467888876555 889999999 99999999999999999999 8877 777755544
No 130
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.61 E-value=4.6e-08 Score=108.72 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=61.8
Q ss_pred CCcccchHHHH-HHHH------HHHHcCC-CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhc
Q 003258 410 QNLSTFSGHIS-RIVD------ILELVSR-ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 481 (835)
Q Consensus 410 ~~lstfSgg~~-rl~~------~~~la~~-~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~ 481 (835)
.+++.|||||+ ++.+ +.+++.+ |+++|||||++|+|+.....+... +..+.. +.+||+|||+.++..+|+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~-l~~~~~-~~~vi~~th~~~~~~~~d 353 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEI-FRKVKS-IPQMIIITHHRELEDVAD 353 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHH-HHHCCS-CSEEEEEESCGGGGGGCS
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHH-HHHhcc-CCeEEEEEChHHHHhhCC
Confidence 56789999999 5643 4556778 999999999999999999999984 444543 468999999988888888
Q ss_pred cccccc
Q 003258 482 KDTRFE 487 (835)
Q Consensus 482 ~~~~~~ 487 (835)
+++.+.
T Consensus 354 ~~~~l~ 359 (371)
T 3auy_A 354 VIINVK 359 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 887765
No 131
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.55 E-value=6.3e-07 Score=96.63 Aligned_cols=133 Identities=14% Similarity=0.209 Sum_probs=76.9
Q ss_pred CCceEEEEEcCCCCChhhHHhhHH-hhhh-hcccceeecCCCCCCchHHHHHHH---HcCCcccccCCcccchHHHHHHH
Q 003258 349 CETRVVVITGPNTGGKTASMKTLG-LASL-MSKAGLYLPAKNHPRLPWFDLILA---DIGDHQSLEQNLSTFSGHISRIV 423 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~iG-li~~-ma~~G~~vP~~~~~~i~~~d~i~~---~ig~~~~~~~~lstfSgg~~rl~ 423 (835)
+| ++++|+||||+||||++..++ .+.. .++.-++++++. ......+++-. .+|..-.. ..+.. .+.
T Consensus 104 ~g-~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~-----~~~~~--~l~ 174 (296)
T 2px0_A 104 HS-KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT-YRIAAVEQLKTYAELLQAPLEV-----CYTKE--EFQ 174 (296)
T ss_dssp CS-SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC-SSTTHHHHHHHHHTTTTCCCCB-----CSSHH--HHH
T ss_pred CC-cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc-ccchHHHHHHHHHHhcCCCeEe-----cCCHH--HHH
Confidence 56 899999999999999999994 3332 232335566554 23344443322 23322111 12222 233
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc--C-CcEEEE-Eecch-hHHhhhcccccccCCceee
Q 003258 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD--R-VGLAVV-TTHYA-DLSCLKDKDTRFENAATEF 493 (835)
Q Consensus 424 ~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~--~-~~~vii-tTH~~-el~~~~~~~~~~~n~~v~~ 493 (835)
.+++.+.++++||+| |.|+|+.....+.. +...+.. . +.++++ +||.. ++..+++....+..+.+.+
T Consensus 175 ~al~~~~~~dlvIiD--T~G~~~~~~~~~~e-l~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 175 QAKELFSEYDHVFVD--TAGRNFKDPQYIDE-LKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HHHHHGGGSSEEEEE--CCCCCTTSHHHHHH-HHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred HHHHHhcCCCEEEEe--CCCCChhhHHHHHH-HHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 344445889999999 88999876654444 4444431 1 223444 48885 4777777665555555554
No 132
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.54 E-value=9.8e-09 Score=113.90 Aligned_cols=139 Identities=13% Similarity=0.074 Sum_probs=83.6
Q ss_pred EEeeeeee---cCCc------------e-eccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCC
Q 003258 328 TVGSLSKG---ISDF------------P-VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPR 391 (835)
Q Consensus 328 ~~~~ls~~---y~~~------------~-v~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~ 391 (835)
.+++++|+ |++. . -.+++.+.+| ++++|+|||||||||||+++ +|++.|..+...
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G-~~i~ivG~sGsGKSTll~~l--------~~~~~~~~g~I~ 207 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLE-RVIVVAGETGSGKTTLMKAL--------MQEIPFDQRLIT 207 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTT-CCEEEEESSSSCHHHHHHHH--------HTTSCTTSCEEE
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHHHHH--------HhcCCCCceEEE
Confidence 46678887 7431 1 2688999999 99999999999999999999 666666554222
Q ss_pred chHHHHHHHHcCCcccccCCccc---------chHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHh
Q 003258 392 LPWFDLILADIGDHQSLEQNLST---------FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 461 (835)
Q Consensus 392 i~~~d~i~~~ig~~~~~~~~lst---------fSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~ 461 (835)
+.... .+.... ....++. +++++. +-.+..++...|+.+++||+.. ..+.. +++.+.
T Consensus 208 ie~~~----e~~~~~-~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~-~l~~l~ 274 (361)
T 2gza_A 208 IEDVP----ELFLPD-HPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYD-FINVAA 274 (361)
T ss_dssp EESSS----CCCCTT-CSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHH-HHHHHH
T ss_pred ECCcc----ccCccc-cCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHH-HHHHHh
Confidence 21000 000000 0011111 113333 3344455667899999999975 12223 445555
Q ss_pred cCCcEEEEEecchhHHhhhcccccccC
Q 003258 462 DRVGLAVVTTHYADLSCLKDKDTRFEN 488 (835)
Q Consensus 462 ~~~~~viitTH~~el~~~~~~~~~~~n 488 (835)
....+++.++|.......+++...+..
T Consensus 275 ~g~~~~l~t~H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 275 SGHGGSITSCHAGSCELTFERLALMVL 301 (361)
T ss_dssp TTCCSCEEEEECSSHHHHHHHHHHHHT
T ss_pred cCCCeEEEEECCCCHHHHHHHHHHHHh
Confidence 545578999999776666776665544
No 133
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.50 E-value=7.1e-08 Score=106.80 Aligned_cols=79 Identities=14% Similarity=0.036 Sum_probs=65.6
Q ss_pred cCCcc-cchHHHH-HHHHHHHHc---------CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHH
Q 003258 409 EQNLS-TFSGHIS-RIVDILELV---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS 477 (835)
Q Consensus 409 ~~~ls-tfSgg~~-rl~~~~~la---------~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~ 477 (835)
+++++ .+|+||+ +++++++++ .+|+++||||||++||+.....|...+ ..+ +.++|++||. +.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l-~~~---~qt~i~~th~-~~- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLA-ASV---PQAIVTGTEL-AP- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHH-HHS---SEEEEEESSC-CT-
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHH-Hhc---CcEEEEEEec-cc-
Confidence 45677 7999999 789999999 899999999999999999999999844 333 2689999995 33
Q ss_pred hhhcccccccCCceeec
Q 003258 478 CLKDKDTRFENAATEFS 494 (835)
Q Consensus 478 ~~~~~~~~~~n~~v~~~ 494 (835)
++++++.+.+|.+...
T Consensus 333 -~~~~i~~l~~G~i~~~ 348 (359)
T 2o5v_A 333 -GAALTLRAQAGRFTPV 348 (359)
T ss_dssp -TCSEEEEEETTEEEEC
T ss_pred -cCCEEEEEECCEEEec
Confidence 8888888999887643
No 134
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.49 E-value=9.5e-07 Score=91.02 Aligned_cols=126 Identities=13% Similarity=0.157 Sum_probs=71.1
Q ss_pred eecCCceEEEEEcCCCCChhhHHhhHHh-hhhhcccceeecCCCCCCchHHHHHHHHcCCcc-------c---cc---CC
Q 003258 346 KVECETRVVVITGPNTGGKTASMKTLGL-ASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ-------S---LE---QN 411 (835)
Q Consensus 346 ~l~~g~~~~~I~GpNGsGKSTlLK~iGl-i~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~-------~---~~---~~ 411 (835)
-+.+| ++++|+||||+|||||+..+.. ........+|+..+.. ..-+.+.+..+|..- . .+ ..
T Consensus 19 Gl~~G-~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~--~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 95 (247)
T 2dr3_A 19 GIPER-NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH--PVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAG 95 (247)
T ss_dssp SEETT-CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC--HHHHHHHHHTTTCCCHHHHHHTSEEEEECSTTT
T ss_pred CCCCC-cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC--HHHHHHHHHHcCCCHHHHhhCCcEEEEecchhh
Confidence 46788 8999999999999999776622 2222223344443321 111112222333210 0 00 00
Q ss_pred c------------ccchH-HHH-HHHHHHHHcCCCcEEEEeCCCCCC--CHHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003258 412 L------------STFSG-HIS-RIVDILELVSRESLVLIDEIGSGT--DPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (835)
Q Consensus 412 l------------stfSg-g~~-rl~~~~~la~~~~LlLLDEp~~gl--Dp~~~~aL~~all~~l~~~~~~viitTH~~e 475 (835)
+ ...+- +.. ++..+.. ..++.++++|+|+... |+.....+...+...+.+.++++|+++|...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~ 174 (247)
T 2dr3_A 96 IGKSKEYEKYIVHDLTDIREFIEVLRQAIR-DINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSV 174 (247)
T ss_dssp TCC--CCCSCBCSCCSSHHHHHHHHHHHHH-HHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred cccccccccccccCccCHHHHHHHHHHHHH-HhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 0 01111 111 2222221 2478999999999987 6655566666677777788999999999864
No 135
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.37 E-value=1.5e-06 Score=93.67 Aligned_cols=132 Identities=17% Similarity=0.128 Sum_probs=72.7
Q ss_pred eeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhH-HhhhhhcccceeecCCCCCCchH---HHHHHHHcCCc
Q 003258 330 GSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPW---FDLILADIGDH 405 (835)
Q Consensus 330 ~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma~~G~~vP~~~~~~i~~---~d~i~~~ig~~ 405 (835)
+++++.|+...-++++. ++ ++++|+||||+||||++..+ |++......-+++-++. ..-.. +..+....|..
T Consensus 80 ~~l~~~~~~~~~~i~~~--~~-~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~-~~~~~~~ql~~~~~~~~l~ 155 (295)
T 1ls1_A 80 EALKEALGGEARLPVLK--DR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT-QRPAAREQLRLLGEKVGVP 155 (295)
T ss_dssp HHHHHHTTSSCCCCCCC--SS-EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS-SCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCCCceeecC--CC-eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc-ccHhHHHHHHHhcccCCeE
Confidence 35566665432356666 67 89999999999999999999 33332222222222221 11111 22223333432
Q ss_pred ccc---cCCcccchHHHHHHHHHHHHcCCCcEEEEeCC-CCCCCHHhHHHHHHHHHHHHhcCCcEEEEEe
Q 003258 406 QSL---EQNLSTFSGHISRIVDILELVSRESLVLIDEI-GSGTDPSEGVALATSILQYLRDRVGLAVVTT 471 (835)
Q Consensus 406 ~~~---~~~lstfSgg~~rl~~~~~la~~~~LlLLDEp-~~glDp~~~~aL~~all~~l~~~~~~viitT 471 (835)
-.. ...+. ...+.++......++++||+|+| +.|+|+.....+.. +...+. -..+++++.
T Consensus 156 ~~~~~~~~~p~----~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~-~~~~~~-~~~~~lv~~ 219 (295)
T 1ls1_A 156 VLEVMDGESPE----SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELAR-LKEVLG-PDEVLLVLD 219 (295)
T ss_dssp EEECCTTCCHH----HHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHH-HHHHHC-CSEEEEEEE
T ss_pred EEEcCCCCCHH----HHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHH-HhhhcC-CCEEEEEEe
Confidence 111 11121 22243444444578999999999 88999877777766 444443 233444443
No 136
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.37 E-value=1.6e-06 Score=95.68 Aligned_cols=122 Identities=18% Similarity=0.205 Sum_probs=69.3
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHh-hhhhcccceeecCCCCCCchHHHHHHHHcCCcc-cccCCcccchHHHH-HHH
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGL-ASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHIS-RIV 423 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGl-i~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~-~~~~~lstfSgg~~-rl~ 423 (835)
+++| +++.|.||||+|||||+..+.. +.......+|+..+.... + .....+|..- .+. -....+.++. .+.
T Consensus 58 l~~G-~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~-~---~~a~~lG~~~~~l~-i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 58 LPRG-RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALD-P---EYAKKLGVDTDSLL-VSQPDTGEQALEIA 131 (349)
T ss_dssp EETT-SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-H---HHHHHTTCCGGGCE-EECCSSHHHHHHHH
T ss_pred ccCC-eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcC-H---HHHHHcCCCHHHeE-EecCCCHHHHHHHH
Confidence 4578 8999999999999999888832 222223345666554221 1 1245566431 111 0111233332 332
Q ss_pred HHHHHcCCCcEEEEeCCCCCCC----------H---HhH---HHHHHHHHHHHhcCCcEEEEEecch
Q 003258 424 DILELVSRESLVLIDEIGSGTD----------P---SEG---VALATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 424 ~~~~la~~~~LlLLDEp~~glD----------p---~~~---~aL~~all~~l~~~~~~viitTH~~ 474 (835)
..+....++++|++|+|++.+. + ... ..+...+...+.+.++++|+++|..
T Consensus 132 ~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~ 198 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELR 198 (349)
T ss_dssp HHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred HHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 2232345699999999999883 2 111 1222224444466799999999975
No 137
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.33 E-value=3.7e-08 Score=102.83 Aligned_cols=31 Identities=23% Similarity=0.178 Sum_probs=26.5
Q ss_pred cCCCcEEEEe----CCCCCCCHHhHHHHHHHHHHH
Q 003258 429 VSRESLVLID----EIGSGTDPSEGVALATSILQY 459 (835)
Q Consensus 429 a~~~~LlLLD----Ep~~glDp~~~~aL~~all~~ 459 (835)
+.+|++++|| ||++++|+.....+...+..+
T Consensus 162 ~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 162 FNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp TSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHH
T ss_pred cCCCcccccccccccccccCCCCcHHHHHHHHHHH
Confidence 7899999999 999999999988888755443
No 138
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.29 E-value=9.3e-08 Score=107.84 Aligned_cols=133 Identities=17% Similarity=0.127 Sum_probs=82.4
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh---------hhcccceeecCCC----------CC--------Cch
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---------LMSKAGLYLPAKN----------HP--------RLP 393 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~---------~ma~~G~~vP~~~----------~~--------~i~ 393 (835)
++++++..+ ..++|+|+||+||||||+++ |... +-...| +++..+ .. .++
T Consensus 149 ~i~lelk~g-~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G-~V~~~~~~~~~l~DtpGli~~a~~~~~L~ 226 (416)
T 1udx_A 149 RLRLELMLI-ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLG 226 (416)
T ss_dssp EEEEEECCS-CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSC
T ss_pred eeeeEEcCC-CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee-EEEecCcceEEEEeccccccchhhhhhhh
Confidence 789999999 89999999999999999999 4311 101111 111111 00 011
Q ss_pred HHHHHHHHcCCcc------cc-cCCcccchHHHHH-HHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCc
Q 003258 394 WFDLILADIGDHQ------SL-EQNLSTFSGHISR-IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG 465 (835)
Q Consensus 394 ~~d~i~~~ig~~~------~~-~~~lstfSgg~~r-l~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~ 465 (835)
...+..+...+ ++ ..++.+||+++++ ..++.+++..|.+|++ +++|+... .....+.+.+.+.+.
T Consensus 227 --~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~ 299 (416)
T 1udx_A 227 --LEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGL 299 (416)
T ss_dssp --HHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTS
T ss_pred --HHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCC
Confidence 11111111000 11 5677889999995 5555788899999999 99999877 444546676666676
Q ss_pred EEEEEe-cchh-HHhhhccc
Q 003258 466 LAVVTT-HYAD-LSCLKDKD 483 (835)
Q Consensus 466 ~viitT-H~~e-l~~~~~~~ 483 (835)
++|++| |..+ +..+.+.+
T Consensus 300 ~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 300 AVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp CEEECCTTTCTTHHHHHHHH
T ss_pred eEEEEECCCccCHHHHHHHH
Confidence 666555 4443 55554443
No 139
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.27 E-value=3.7e-08 Score=98.20 Aligned_cols=49 Identities=10% Similarity=-0.086 Sum_probs=33.8
Q ss_pred CCCCHHhHHHHHHHHHHHHhcCCcEEEEEecc-hh-HHhhhcccccccCCceeec
Q 003258 442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHY-AD-LSCLKDKDTRFENAATEFS 494 (835)
Q Consensus 442 ~glDp~~~~aL~~all~~l~~~~~~viitTH~-~e-l~~~~~~~~~~~n~~v~~~ 494 (835)
.++|+..... .. .+..+...+.++|.+||+ ++ +..+|+++. .+|.+.++
T Consensus 126 ~~ld~~~~~~-~~-~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~ 176 (189)
T 2bdt_A 126 EQMGERCLEL-VE-EFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFC 176 (189)
T ss_dssp ---CGGGGHH-HH-HHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC
T ss_pred ccCCHHHHHH-HH-HHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEe
Confidence 3789987776 54 455555567799999998 55 777888876 77877654
No 140
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.24 E-value=4.9e-06 Score=90.11 Aligned_cols=94 Identities=21% Similarity=0.229 Sum_probs=58.2
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-HhhhhhcccceeecCCCCCCchHHHH---HHHHcCCcccccCCcccchH
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDL---ILADIGDHQSLEQNLSTFSG 417 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma~~G~~vP~~~~~~i~~~d~---i~~~ig~~~~~~~~lstfSg 417 (835)
++++...++ ++++|+||||+||||+++.+ +++......-+++.++. .....+++ +...+|..- +...|+
T Consensus 96 ~~~~~~~~~-~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~-----~~~~s~ 168 (306)
T 1vma_A 96 KLNVPPEPP-FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT-FRAAAIEQLKIWGERVGATV-----ISHSEG 168 (306)
T ss_dssp CCCCCSSSC-EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEE-----ECCSTT
T ss_pred CCcccCCCC-eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc-ccHHHHHHHHHHHHHcCCcE-----EecCCc
Confidence 455656677 89999999999999999999 33333222223333332 23333333 334455432 233455
Q ss_pred HHH-HH---HHHHHHcCCCcEEEEeCCCC
Q 003258 418 HIS-RI---VDILELVSRESLVLIDEIGS 442 (835)
Q Consensus 418 g~~-rl---~~~~~la~~~~LlLLDEp~~ 442 (835)
++. ++ +++.++..+++++|+|+|+.
T Consensus 169 ~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 169 ADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 554 44 44556788999999999986
No 141
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.21 E-value=3.6e-06 Score=92.01 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=23.0
Q ss_pred cCCceEEEEEcCCCCChhhHHhhH-Hhh
Q 003258 348 ECETRVVVITGPNTGGKTASMKTL-GLA 374 (835)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLK~i-Gli 374 (835)
.+| .+++|+|||||||||+++.| |++
T Consensus 127 ~~g-~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKP-YVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCC-eEEEEECCCCCCHHHHHHHHHHHH
Confidence 467 99999999999999999999 444
No 142
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.16 E-value=3.1e-07 Score=99.50 Aligned_cols=48 Identities=13% Similarity=0.262 Sum_probs=39.6
Q ss_pred CeEEEeeeeeecCCcee-ccceee-------------------cCCceEEEEEcCCCCChhhHHhhH-Hhh
Q 003258 325 SEMTVGSLSKGISDFPV-PIDIKV-------------------ECETRVVVITGPNTGGKTASMKTL-GLA 374 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v-~isl~l-------------------~~g~~~~~I~GpNGsGKSTlLK~i-Gli 374 (835)
++|+++||++.|+. .+ .+++.+ .+| .+++|+||||||||||+++| |++
T Consensus 36 ~~i~~~~v~~~y~~-~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g-~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 36 EDLSLEEVAEIYLP-LSRLLNFYISSNLRRQAVLEQFLGTNGQRIP-YIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp TTCCHHHHHHTHHH-HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCC-EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cccchHhHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHhccCCCCCC-EEEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999942 22 777776 777 89999999999999999999 443
No 143
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.16 E-value=7.7e-08 Score=95.78 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=22.4
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhH
Q 003258 347 VECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+.+| ++++|+|||||||||++|+|
T Consensus 6 i~~g-~~i~l~G~~GsGKSTl~~~L 29 (191)
T 1zp6_A 6 DLGG-NILLLSGHPGSGKSTIAEAL 29 (191)
T ss_dssp CCTT-EEEEEEECTTSCHHHHHHHH
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHH
Confidence 5678 89999999999999999999
No 144
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.14 E-value=8.6e-06 Score=93.14 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=29.2
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH-Hhhh
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS 375 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~ 375 (835)
++||.+.+| .+++|+||||||||||+++| |++.
T Consensus 285 ~Isl~i~~G-eVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 285 PLNVEGKAP-FVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp CCCCCSCTT-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceeeccCC-eEEEEECCCcccHHHHHHHHHHHhh
Confidence 678888899 99999999999999999999 4443
No 145
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.12 E-value=2.5e-05 Score=86.25 Aligned_cols=122 Identities=17% Similarity=0.153 Sum_probs=68.9
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHH-hhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHH-HHHH
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVD 424 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iG-li~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~ 424 (835)
+++| +++.|+||||+|||||+.++. .+.......+|+-.+...... ...++|....--.....++.++. .+..
T Consensus 58 i~~G-~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 58 YPRG-RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp EETT-EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred ccCC-cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4578 999999999999999999983 333322233466554422211 44556654211111122344433 2222
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHh-------------HHHHH---HHHHHHHhcCCcEEEEEecc
Q 003258 425 ILELVSRESLVLIDEIGSGTDPSE-------------GVALA---TSILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 425 ~~~la~~~~LlLLDEp~~glDp~~-------------~~aL~---~all~~l~~~~~~viitTH~ 473 (835)
.+.....++++++|..+.-....+ ...+. ..+.....+.++++|++.|-
T Consensus 133 ~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp HHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred HHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 223346789999999877664110 12222 22333444568899999887
No 146
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.08 E-value=5e-07 Score=97.13 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=60.5
Q ss_pred CCceEEEEEcCCCCChhhHHhhH-Hhhhhhc---ccceeecCCCC----------------------------CCchHHH
Q 003258 349 CETRVVVITGPNTGGKTASMKTL-GLASLMS---KAGLYLPAKNH----------------------------PRLPWFD 396 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma---~~G~~vP~~~~----------------------------~~i~~~d 396 (835)
++ .+++|+||+|||||||.+.| +++.... ..+.++++++. ..+..+.
T Consensus 30 ~~-~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 30 CP-LFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp SC-EEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 44 79999999999999999998 4443211 12222233321 1122233
Q ss_pred HHHHHcCCc------cc--ccCCcccchHHHH-HHHHH--HHHcCCCcEEEEeCCCCCCCHHh
Q 003258 397 LILADIGDH------QS--LEQNLSTFSGHIS-RIVDI--LELVSRESLVLIDEIGSGTDPSE 448 (835)
Q Consensus 397 ~i~~~ig~~------~~--~~~~lstfSgg~~-rl~~~--~~la~~~~LlLLDEp~~glDp~~ 448 (835)
+.+..+... .. +...-..+||||. |+..+ ..+ +|++||+||+++++|+..
T Consensus 109 ~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 109 EVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred HHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 444544332 11 2344567899998 66654 333 899999999999999864
No 147
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.02 E-value=1.8e-06 Score=93.97 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
++++|+||||||||||||.+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l 24 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHI 24 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHH
Confidence 68999999999999999998
No 148
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.00 E-value=3.2e-05 Score=84.97 Aligned_cols=118 Identities=14% Similarity=0.024 Sum_probs=69.6
Q ss_pred EEEEEcCCCCChhhHHhhHH-hhhhh-cccceeecCCCCC-CchHHHHHHHHcCCcccccCCcccchHH-HH-HHHHHHH
Q 003258 353 VVVITGPNTGGKTASMKTLG-LASLM-SKAGLYLPAKNHP-RLPWFDLILADIGDHQSLEQNLSTFSGH-IS-RIVDILE 427 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~iG-li~~m-a~~G~~vP~~~~~-~i~~~d~i~~~ig~~~~~~~~lstfSgg-~~-rl~~~~~ 427 (835)
.++|+||+|+||||+++.+. .+... ...-.++.+.... ...++..++..+|... +....+.. .. ++...+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~l~~~l~ 121 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPF----PRRGLSRDEFLALLVEHLR 121 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCC----CSSCCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccC----CCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999983 22111 0111234433211 2345666777676431 11122222 22 3444444
Q ss_pred HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc---CCcEEEEEecchhH
Q 003258 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD---RVGLAVVTTHYADL 476 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~---~~~~viitTH~~el 476 (835)
....|.+|+|||+... |+.....|.. +++.+.. .+.++|++||+.++
T Consensus 122 ~~~~~~vlilDE~~~l-~~~~~~~L~~-~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNL-APDILSTFIR-LGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HTTCCEEEEEETGGGS-CHHHHHHHHH-HTTCHHHHSSCCEEEEEEESSTHH
T ss_pred hcCCeEEEEEECcccc-chHHHHHHHH-HHHhCCCCCcCCEEEEEEECCchH
Confidence 4567889999999876 7666555555 3333333 46789999998764
No 149
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.90 E-value=3.4e-05 Score=87.92 Aligned_cols=126 Identities=10% Similarity=0.030 Sum_probs=71.1
Q ss_pred eeecCCceEEEEEcCCCCChhhHHhhHHhhhhh--cccceeecCCCCCCchHHHHHHH-HcCC-----------------
Q 003258 345 IKVECETRVVVITGPNTGGKTASMKTLGLASLM--SKAGLYLPAKNHPRLPWFDLILA-DIGD----------------- 404 (835)
Q Consensus 345 l~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~m--a~~G~~vP~~~~~~i~~~d~i~~-~ig~----------------- 404 (835)
.-+.+| ++++|.|++|+|||||+..++..... ....+|+-.+. ..-.+..+++. ..|.
T Consensus 198 gGl~~G-~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~-s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~ 275 (454)
T 2r6a_A 198 SGFQRS-DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM-SAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGK 275 (454)
T ss_dssp SSBCTT-CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS-CHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHH
T ss_pred CCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC-CHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHH
Confidence 356788 99999999999999999998443322 11223333222 11112222211 1111
Q ss_pred ----------cccccCCcccchHHHHH-HHHHHHHcCCCcEEEEeCCCCCCCHH--------hHHHHHHHHHHHHhcCCc
Q 003258 405 ----------HQSLEQNLSTFSGHISR-IVDILELVSRESLVLIDEIGSGTDPS--------EGVALATSILQYLRDRVG 465 (835)
Q Consensus 405 ----------~~~~~~~lstfSgg~~r-l~~~~~la~~~~LlLLDEp~~glDp~--------~~~aL~~all~~l~~~~~ 465 (835)
....-...+.+|.++.+ .+..+....++.+|++|+|+...++. +...+...+.....+.++
T Consensus 276 ~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i 355 (454)
T 2r6a_A 276 LTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEV 355 (454)
T ss_dssp HHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 11111123467777664 22223334689999999999877542 223444433333335689
Q ss_pred EEEEEec
Q 003258 466 LAVVTTH 472 (835)
Q Consensus 466 ~viitTH 472 (835)
+||+++|
T Consensus 356 ~vi~~sq 362 (454)
T 2r6a_A 356 PVIALSQ 362 (454)
T ss_dssp CEEEEEC
T ss_pred eEEEEec
Confidence 9999999
No 150
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.89 E-value=3.8e-06 Score=86.57 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=21.6
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
++||++.+| ++++|+|||||||||++++|
T Consensus 19 ~~sl~v~~G-~ii~l~Gp~GsGKSTl~~~L 47 (231)
T 3lnc_A 19 PGSMLKSVG-VILVLSSPSGCGKTTVANKL 47 (231)
T ss_dssp ---CCEECC-CEEEEECSCC----CHHHHH
T ss_pred CCCcccCCC-CEEEEECCCCCCHHHHHHHH
Confidence 899999999 99999999999999999999
No 151
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.86 E-value=9.4e-06 Score=98.51 Aligned_cols=132 Identities=15% Similarity=0.168 Sum_probs=79.1
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhhhcc-----cceeecCCCCCCchHHHHHHHHcCCc--------------cc
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASLMSK-----AGLYLPAKNHPRLPWFDLILADIGDH--------------QS 407 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~-----~G~~vP~~~~~~i~~~d~i~~~ig~~--------------~~ 407 (835)
+..+ +.++|+|||||||||++.++-+...... +.+..|... ......+.+...+|.. ..
T Consensus 106 l~~~-~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~-La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~ 183 (773)
T 2xau_A 106 YQNN-QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRV-AAMSVAQRVAEEMDVKLGEEVGYSIRFENKTS 183 (773)
T ss_dssp HHHC-SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHH-HHHHHHHHHHHHTTCCBTTTEEEEETTEEECC
T ss_pred HhCC-CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHH-HHHHHHHHHHHHhCCchhheecceeccccccC
Confidence 4456 7899999999999998888722211111 222334321 1112233343333321 11
Q ss_pred ccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCC-CCCHHhHHHHHHHHHHHHhcCCcEEEE-Eecchh-HHhhhc
Q 003258 408 LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS-GTDPSEGVALATSILQYLRDRVGLAVV-TTHYAD-LSCLKD 481 (835)
Q Consensus 408 ~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~-glDp~~~~aL~~all~~l~~~~~~vii-tTH~~e-l~~~~~ 481 (835)
....+..++.|+. +.......+.++++||+||+.. ++|+.....+...+... .....++++ +||+.+ +..+..
T Consensus 184 ~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 184 NKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp TTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCCHHHHHHTT
T ss_pred CCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHh-CCCceEEEEeccccHHHHHHHhc
Confidence 2345667888887 6666666788999999999995 99987666666545443 223346666 599865 554443
No 152
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.86 E-value=8e-07 Score=97.56 Aligned_cols=45 Identities=16% Similarity=0.050 Sum_probs=39.1
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+++++++++.|++..+ ++++++.+| .+++|+||||+||||||+++
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g-~~v~i~G~~GaGKSTLl~~l 75 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRA-IRVGITGVPGVGKSTTIDAL 75 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCS-EEEEEECCTTSCHHHHHHHH
T ss_pred HHeeCCcccccChHHHHHhCCcccCCC-eEEEEECCCCCCHHHHHHHH
Confidence 3567788888875544 899999999 99999999999999999999
No 153
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.82 E-value=5.7e-05 Score=86.50 Aligned_cols=107 Identities=19% Similarity=0.258 Sum_probs=60.5
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccce-eecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHH
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGL-YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS 420 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~-~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~ 420 (835)
.+++.++.| ++|+||+|+||||++|.++-. .+. |+..++ .+....... .++.+
T Consensus 43 ~~g~~~p~g---vLL~GppGtGKT~Laraia~~-----~~~~f~~is~----------------~~~~~~~~g--~~~~~ 96 (476)
T 2ce7_A 43 RIGARMPKG---ILLVGPPGTGKTLLARAVAGE-----ANVPFFHISG----------------SDFVELFVG--VGAAR 96 (476)
T ss_dssp TTTCCCCSE---EEEECCTTSSHHHHHHHHHHH-----HTCCEEEEEG----------------GGTTTCCTT--HHHHH
T ss_pred hcCCCCCCe---EEEECCCCCCHHHHHHHHHHH-----cCCCeeeCCH----------------HHHHHHHhc--ccHHH
Confidence 445555555 789999999999999999321 111 111010 000010111 13333
Q ss_pred -HHHHHHHHcCCCcEEEEeCCCC----------CCCHHhHHHHHHHHHHHHh----cCCcEEEEEecchh
Q 003258 421 -RIVDILELVSRESLVLIDEIGS----------GTDPSEGVALATSILQYLR----DRVGLAVVTTHYAD 475 (835)
Q Consensus 421 -rl~~~~~la~~~~LlLLDEp~~----------glDp~~~~aL~~all~~l~----~~~~~viitTH~~e 475 (835)
+-.+..+....|.+|+|||+.+ |.|+.....+.. ++..+. ..+..+|.+||..+
T Consensus 97 ~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~-LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 97 VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQ-LLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHH-HHHHHHHSCGGGTEEEEEEESCGG
T ss_pred HHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHH-HHHHHhccCCCCCEEEEEecCChh
Confidence 4444556667899999999933 555554444444 555553 23568899999975
No 154
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.75 E-value=1.3e-05 Score=91.87 Aligned_cols=41 Identities=17% Similarity=0.290 Sum_probs=35.2
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCc
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL 392 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i 392 (835)
++||++.+ ++++|+|||||||||||++| +|+..|..|...+
T Consensus 22 ~vsl~i~~--e~~~liG~nGsGKSTLl~~l--------~Gl~~p~~G~I~~ 62 (483)
T 3euj_A 22 ARTFDFDE--LVTTLSGGNGAGKSTTMAGF--------VTALIPDLTLLNF 62 (483)
T ss_dssp EEEEECCS--SEEEEECCTTSSHHHHHHHH--------HHHHCCCTTTCCC
T ss_pred ceEEEEcc--ceEEEECCCCCcHHHHHHHH--------hcCCCCCCCEEEE
Confidence 88999987 79999999999999999999 7777777775443
No 155
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.75 E-value=8.5e-05 Score=81.54 Aligned_cols=128 Identities=14% Similarity=0.123 Sum_probs=72.2
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhhh-------cccceeecCCCCCCchHHHHHHHHcCCccc--ccC--Ccccc
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASLM-------SKAGLYLPAKNHPRLPWFDLILADIGDHQS--LEQ--NLSTF 415 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~m-------a~~G~~vP~~~~~~i~~~d~i~~~ig~~~~--~~~--~lstf 415 (835)
+++| +++.|.||+|+|||||+..++....+ ....+|+..+......-+.+++..+|.... +++ ....+
T Consensus 119 l~~G-~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 119 IESM-AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp BCSS-EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 5678 99999999999999999998554332 222346655542222233445556665321 000 01122
Q ss_pred hHHHH-H-HHHHHHHc----CCCcEEEEeCCCCCCCHH--------h----HHHHHHHHHHHHhcCCcEEEEEecchh
Q 003258 416 SGHIS-R-IVDILELV----SRESLVLIDEIGSGTDPS--------E----GVALATSILQYLRDRVGLAVVTTHYAD 475 (835)
Q Consensus 416 Sgg~~-r-l~~~~~la----~~~~LlLLDEp~~glDp~--------~----~~aL~~all~~l~~~~~~viitTH~~e 475 (835)
++++. . +..+..++ .++++|++|.++.-..+. + ...+...+.....+.+++||+++|...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 33222 2 22222222 678999999999876442 1 123333344444556889999999753
No 156
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.70 E-value=9.7e-06 Score=81.23 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=22.1
Q ss_pred ceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 344 DIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 344 sl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
|+++.+| ++++|+|||||||||++++|
T Consensus 1 s~~m~~g-~ii~l~Gp~GsGKSTl~~~L 27 (205)
T 3tr0_A 1 SNAMNKA-NLFIISAPSGAGKTSLVRAL 27 (205)
T ss_dssp ----CCC-CEEEEECCTTSCHHHHHHHH
T ss_pred CCcCCCC-cEEEEECcCCCCHHHHHHHH
Confidence 3556778 89999999999999999999
No 157
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.65 E-value=6.7e-06 Score=86.47 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=29.7
Q ss_pred CeEEEeee-eeec-CCcee--ccceeecC---CceEEEEEcCCCCChhhHHhhH
Q 003258 325 SEMTVGSL-SKGI-SDFPV--PIDIKVEC---ETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 325 ~~l~~~~l-s~~y-~~~~v--~isl~l~~---g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++++|+ ++.| ++..+ ++||++.+ | ++++|+||+||||||+.+.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g-~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNG-RSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTT-CCEEEECSTTSCHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCC-CEEEEECCCCCCHHHHHHHH
Confidence 36889999 9999 65555 99999999 9 89999999999999999999
No 158
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.59 E-value=2.8e-05 Score=88.25 Aligned_cols=102 Identities=15% Similarity=0.251 Sum_probs=59.8
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhhcccc---eeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHH
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLMSKAG---LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILEL 428 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~ma~~G---~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~l 428 (835)
..++|.||+|+|||||++.++-...-...+ .++.+.. +...+...+... ........
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~-----~~~~~~~~~~~~---------------~~~~~~~~ 190 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK-----FLNDLVDSMKEG---------------KLNEFREK 190 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH-----HHHHHHHHHHTT---------------CHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH-----HHHHHHHHHHcc---------------cHHHHHHH
Confidence 568999999999999999994322111001 1222111 112222211100 01111222
Q ss_pred cC-CCcEEEEeCCCCCCCH-HhHHHHHHHHHHHHhcCCcEEEEEecch
Q 003258 429 VS-RESLVLIDEIGSGTDP-SEGVALATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 429 a~-~~~LlLLDEp~~glDp-~~~~aL~~all~~l~~~~~~viitTH~~ 474 (835)
.. ++++|+|||+....+. .....+.. +++.+.+.+..+|++||..
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~-~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFH-TFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHH-HHHHHHTTTCEEEEEESSC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHH-HHHHHHHCCCeEEEEECCC
Confidence 24 8999999999887764 45556666 6666777788999999973
No 159
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.59 E-value=3.1e-05 Score=84.71 Aligned_cols=120 Identities=14% Similarity=0.097 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCChhhHHhhHH-hhhhh---cccceeecCCC-CCCchHHHHHHHHcCCcccccCCcccchHHH-H-HHHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG-LASLM---SKAGLYLPAKN-HPRLPWFDLILADIGDHQSLEQNLSTFSGHI-S-RIVD 424 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG-li~~m---a~~G~~vP~~~-~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~-~-rl~~ 424 (835)
..++|+||+|+|||||++.+. .+... ...-.++.+.. ......+..++..+|... +....+... . ++..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~l~~ 121 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKV----PFTGLSIAELYRRLVK 121 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCC----CSSSCCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCC----CCCCCCHHHHHHHHHH
Confidence 689999999999999999983 22111 00112222211 011122344444443321 111222222 2 3444
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHH---hcCCcEEEEEecchhH
Q 003258 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL---RDRVGLAVVTTHYADL 476 (835)
Q Consensus 425 ~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l---~~~~~~viitTH~~el 476 (835)
.+.....|.+|+|||+....+......+. .++..+ ...+.++|++||+..+
T Consensus 122 ~l~~~~~~~vlilDE~~~l~~~~~~~~l~-~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 122 AVRDYGSQVVIVLDEIDAFVKKYNDDILY-KLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHHTCCSCEEEEEETHHHHHHSSCSTHHH-HHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHhccCCeEEEEEcChhhhhccCcCHHHH-HHhhchhhcCCCeEEEEEEECCCCh
Confidence 44444558899999998765332122222 244444 3345688999998753
No 160
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.58 E-value=0.00015 Score=78.74 Aligned_cols=127 Identities=13% Similarity=0.173 Sum_probs=72.9
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhhhc-------ccceeecCCCCCCchHHHHHHHHcCCccc--ccC--Ccccc
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-------KAGLYLPAKNHPRLPWFDLILADIGDHQS--LEQ--NLSTF 415 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma-------~~G~~vP~~~~~~i~~~d~i~~~ig~~~~--~~~--~lstf 415 (835)
+++| +++.|.||+|+|||||+..++...... ...+|+-.+......-+.+++..+|.... +++ ....+
T Consensus 104 l~~G-~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 104 IETR-TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp EETT-SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCC-cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 5678 899999999999999999985543321 22356655542122223345556665321 000 11223
Q ss_pred hHHHH--HHHHHHHHc---CCCcEEEEeCCCCCCCH--------HhH----HHHHHHHHHHHhcCCcEEEEEecch
Q 003258 416 SGHIS--RIVDILELV---SRESLVLIDEIGSGTDP--------SEG----VALATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 416 Sgg~~--rl~~~~~la---~~~~LlLLDEp~~glDp--------~~~----~aL~~all~~l~~~~~~viitTH~~ 474 (835)
+.++. -+..+..++ .++++|++|.++.-... .++ ..+...+.....+.+++||+++|-.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 44432 233343333 67899999999876532 122 2333334444455688999998864
No 161
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.54 E-value=0.00029 Score=79.61 Aligned_cols=121 Identities=16% Similarity=0.166 Sum_probs=64.6
Q ss_pred CCceEEEEEcCCCCChhhHHhhHHh-hhhhcccceeecCCCCCCchHHHHHH---HHcCCcccccCCcccchHHHHHHHH
Q 003258 349 CETRVVVITGPNTGGKTASMKTLGL-ASLMSKAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTFSGHISRIVD 424 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~iGl-i~~ma~~G~~vP~~~~~~i~~~d~i~---~~ig~~~~~~~~lstfSgg~~rl~~ 424 (835)
++ .+++++||||+||||++..++. +......-+++.++. ...+.++++- ..+|..-........ .....+-.+
T Consensus 96 ~~-~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~-~r~~a~eqL~~~~~~~gv~~~~~~~~~d-p~~i~~~al 172 (433)
T 3kl4_A 96 LP-FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV-YRPAAYDQLLQLGNQIGVQVYGEPNNQN-PIEIAKKGV 172 (433)
T ss_dssp SS-EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC-SCHHHHHHHHHHHHTTTCCEECCTTCSC-HHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc-cchhHHHHHHHHHHhcCCceeeccccCC-HHHHHHHHH
Confidence 35 8999999999999999999843 222222223334332 2334444432 223332111000000 011111122
Q ss_pred HHHHcCCCcEEEEeCCCC-C--CCHHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 003258 425 ILELVSRESLVLIDEIGS-G--TDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 425 ~~~la~~~~LlLLDEp~~-g--lDp~~~~aL~~all~~l~~~~~~viitTH~ 473 (835)
..+...+++++|+|+|+. + .|+.....+.. +...+......+++.+|.
T Consensus 173 ~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~-i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 173 DIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKE-MYDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHH-HHHHHCCSEEEEEEEGGG
T ss_pred HHHHhcCCCEEEEECCCCccccCCHHHHHHHHH-HHHhhCCcceEEEEeCcc
Confidence 222335899999999994 5 78877766666 555554433455555655
No 162
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.52 E-value=3.3e-06 Score=87.52 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=38.6
Q ss_pred eEEEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCC
Q 003258 326 EMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP 390 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~ 390 (835)
+|+++|+...|+. ++++.+ .+++|+|||||||||||++| +|+..|..|..
T Consensus 9 ~l~l~~~~~~~~~-----~~~~~~--~~~~i~GpnGsGKSTll~~i--------~g~~~~~~G~i 58 (227)
T 1qhl_A 9 SLTLINWNGFFAR-----TFDLDE--LVTTLSGGNGAGKSTTMAAF--------VTALIPDLTLL 58 (227)
T ss_dssp EEEEEEETTEEEE-----EECHHH--HHHHHHSCCSHHHHHHHHHH--------HHHHSCCTTTC
T ss_pred EEEEEeeecccCC-----EEEEcC--cEEEEECCCCCCHHHHHHHH--------hcccccCCCeE
Confidence 4678888776643 455554 57899999999999999999 88777877643
No 163
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.52 E-value=2.6e-05 Score=86.10 Aligned_cols=96 Identities=17% Similarity=0.211 Sum_probs=59.6
Q ss_pred CCceEEEEEcCCCCChhhHHhhH-Hhhh-hhc-----ccc-----------eeecCCCCC------------Cch-----
Q 003258 349 CETRVVVITGPNTGGKTASMKTL-GLAS-LMS-----KAG-----------LYLPAKNHP------------RLP----- 393 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~i-Gli~-~ma-----~~G-----------~~vP~~~~~------------~i~----- 393 (835)
.| ++++|+||||+|||||+++| |+.. +.. ..| .++|+.+.. .++
T Consensus 214 ~G-~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l~~l~~~e~~ 292 (358)
T 2rcn_A 214 TG-RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQIT 292 (358)
T ss_dssp TT-SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCCCCCCHHHHH
T ss_pred CC-CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhhhcCCCHHHHH
Confidence 57 79999999999999999999 5543 210 001 233433200 000
Q ss_pred -HHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc
Q 003258 394 -WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462 (835)
Q Consensus 394 -~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~ 462 (835)
.|..++..+|+.+..+....++| |++ +++++. |+.+..+......+++.+.+
T Consensus 293 ~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~----------------gli~~~R~~~y~~l~~e~~~ 346 (358)
T 2rcn_A 293 QGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVEN----------------GAIAETRFENYHRILESMAQ 346 (358)
T ss_dssp HTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHH----------------TSSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHh----------------cCCCHHHHHHHHHHHHHHHh
Confidence 12334566677777888999999 666 777765 34555666666657666544
No 164
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.51 E-value=0.00062 Score=75.08 Aligned_cols=122 Identities=19% Similarity=0.251 Sum_probs=68.2
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhh-hcccceeecCCCCCCchHHHHHHHHcCCccc-ccCCcccchHHHH-HHH
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDHQS-LEQNLSTFSGHIS-RIV 423 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~-ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~-~~~~lstfSgg~~-rl~ 423 (835)
+++| +++.|.||+|+|||||...++.... .....+|+..+.... + .....+|..-. +. -...-+.++. .+.
T Consensus 60 l~~G-~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~-~---~~a~~~g~~~~~l~-i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 60 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD-P---IYARKLGVDIDNLL-CSQPDTGEQALEIC 133 (356)
T ss_dssp EETT-SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-H---HHHHHTTCCGGGCE-EECCSSHHHHHHHH
T ss_pred ccCC-eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCcc-H---HHHHHcCCChhhee-eeCCCCHHHHHHHH
Confidence 5678 8999999999999999988843322 223345666654222 1 12455554311 10 0001122222 222
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHh------------H----HHHHHHHHHHHhcCCcEEEEEecch
Q 003258 424 DILELVSRESLVLIDEIGSGTDPSE------------G----VALATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 424 ~~~~la~~~~LlLLDEp~~glDp~~------------~----~aL~~all~~l~~~~~~viitTH~~ 474 (835)
..+....++++|++|.++.-....+ . ..+...+...+.+.+++||+++|-.
T Consensus 134 ~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 200 (356)
T ss_dssp HHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--
T ss_pred HHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 2222246899999999998764211 1 1223334444566789999999974
No 165
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.50 E-value=4.2e-05 Score=75.28 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=24.2
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
++++.+.+| +.+|+|||||||||+|++|
T Consensus 19 ~~~~~~~~g--~~~i~G~NGsGKStll~ai 46 (182)
T 3kta_A 19 KVVIPFSKG--FTAIVGANGSGKSNIGDAI 46 (182)
T ss_dssp CEEEECCSS--EEEEEECTTSSHHHHHHHH
T ss_pred cEEEecCCC--cEEEECCCCCCHHHHHHHH
Confidence 456666666 8999999999999999999
No 166
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.48 E-value=1.3e-06 Score=97.53 Aligned_cols=59 Identities=8% Similarity=-0.105 Sum_probs=41.8
Q ss_pred CC--cEEEEeCCCCCCCHHhHHHHHHHHHHHH-hcCCcEEEEEecchh-HHhhhcccc-cccCC-cee
Q 003258 431 RE--SLVLIDEIGSGTDPSEGVALATSILQYL-RDRVGLAVVTTHYAD-LSCLKDKDT-RFENA-ATE 492 (835)
Q Consensus 431 ~~--~LlLLDEp~~glDp~~~~aL~~all~~l-~~~~~~viitTH~~e-l~~~~~~~~-~~~n~-~v~ 492 (835)
+| ++.++|||+.+.|+........ .++.+ ...|.|++ +|+.. +..+|++.. .+.+| ...
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~-~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~ 203 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLE-GLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPI 203 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCG
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHH-HHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCcee
Confidence 56 7888889999888888777666 44555 45455543 99965 777888877 66777 544
No 167
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.47 E-value=5.9e-05 Score=78.53 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=31.8
Q ss_pred EeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 329 ~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
++++.+.|++..+ ++++.+++| ++|+||||+|||||++++
T Consensus 28 l~~l~~~~~~~~~~~~~~~~~~~g---~ll~G~~G~GKTtl~~~i 69 (254)
T 1ixz_A 28 LKEIVEFLKNPSRFHEMGARIPKG---VLLVGPPGVGKTHLARAV 69 (254)
T ss_dssp HHHHHHHHHCHHHHHHTTCCCCSE---EEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHcCCCCCCe---EEEECCCCCCHHHHHHHH
Confidence 4566666655433 778888776 899999999999999999
No 168
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.45 E-value=4.4e-05 Score=76.48 Aligned_cols=102 Identities=16% Similarity=0.207 Sum_probs=50.3
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhhc-ccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcC
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLMS-KAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVS 430 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~ma-~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~ 430 (835)
..+.|+||+|+|||||++.++-..... ....++.+. .++..+...+.. ..+. . +.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--------~~~~----~---~~~~~~ 114 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP-----ELFRELKHSLQD--------QTMN----E---KLDYIK 114 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH-----HHHHHHHHC-----------CCCH----H---HHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH-----HHHHHHHHHhcc--------chHH----H---HHHHhc
Confidence 578999999999999999983222110 001111110 112222221111 0111 1 111223
Q ss_pred CCcEEEEeCCCCC-CCHHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 003258 431 RESLVLIDEIGSG-TDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 431 ~~~LlLLDEp~~g-lDp~~~~aL~~all~~l~~~~~~viitTH~ 473 (835)
++++|+|||++.. +++.....+...++......+..+|+||+.
T Consensus 115 ~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 115 KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 4579999999552 333334434443555544445677777775
No 169
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.44 E-value=4.9e-05 Score=87.62 Aligned_cols=29 Identities=10% Similarity=0.339 Sum_probs=25.5
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
++.+.+.++ ..++|.|++||||||+|+++
T Consensus 159 pv~ldL~~~-pHlLIaG~TGSGKSt~L~~l 187 (512)
T 2ius_A 159 PVVADLAKM-PHLLVAGTTGSGASVGVNAM 187 (512)
T ss_dssp EEEEEGGGS-CSEEEECCTTSSHHHHHHHH
T ss_pred EEEEEcccC-ceEEEECCCCCCHHHHHHHH
Confidence 566777777 78999999999999999998
No 170
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.43 E-value=6.5e-05 Score=82.79 Aligned_cols=113 Identities=16% Similarity=0.112 Sum_probs=66.9
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCC--CC----CchHHH--H-HHHHcCCcccccCCcccchHHHHHH
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN--HP----RLPWFD--L-ILADIGDHQSLEQNLSTFSGHISRI 422 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~--~~----~i~~~d--~-i~~~ig~~~~~~~~lstfSgg~~rl 422 (835)
-.++|+|+||+|||||++.+ +|....... .. .+..+. . -+..++.....+.....+++++++.
T Consensus 168 ~~v~lvG~~gvGKSTLin~L--------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 239 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKAL--------TTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQA 239 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHH--------CSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH--------hCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHH
Confidence 47899999999999999999 432211100 00 000000 0 0011112222345566778887754
Q ss_pred HHHHHHcCCCcEEEEe-CCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEe--cch
Q 003258 423 VDILELVSRESLVLID-EIGSGTDPSEGVALATSILQYLRDRVGLAVVTT--HYA 474 (835)
Q Consensus 423 ~~~~~la~~~~LlLLD-Ep~~glDp~~~~aL~~all~~l~~~~~~viitT--H~~ 474 (835)
..+.....+.-|+++| +++.|+|+.+...+...+..... +..+|++. ||.
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl 292 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDV 292 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTT
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECccc
Confidence 4444445677789999 99999999887777664554332 45566666 774
No 171
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.42 E-value=7.8e-05 Score=75.46 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=24.0
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhH-Hhhh
Q 003258 347 VECETRVVVITGPNTGGKTASMKTL-GLAS 375 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~ 375 (835)
..+| .+++|+||||||||||+++| |++.
T Consensus 19 ~~~g-~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGR-QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSC-EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567 99999999999999999999 4544
No 172
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.38 E-value=1.8e-05 Score=89.33 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=32.7
Q ss_pred eEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 326 ~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.+.++++++.|+...+ .+ + ..+| .+++|+|||||||||||+++
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~-~~~g-gii~I~GpnGSGKTTlL~al 187 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-I-KRPH-GIILVTGPTGSGKSTTLYAG 187 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-H-TSSS-EEEEEECSTTSCHHHHHHHH
T ss_pred CCCHHHcCCCHHHHHHHHHH-H-HhcC-CeEEEECCCCCCHHHHHHHH
Confidence 3456777777755433 44 3 2566 89999999999999999999
No 173
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.36 E-value=0.00025 Score=75.23 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=24.2
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
++++.+++| ++|+||||+|||||+|+|
T Consensus 38 ~~~l~~~~G---vlL~Gp~GtGKTtLakal 64 (274)
T 2x8a_A 38 ALGLVTPAG---VLLAGPPGCGKTLLAKAV 64 (274)
T ss_dssp HTTCCCCSE---EEEESSTTSCHHHHHHHH
T ss_pred HcCCCCCCe---EEEECCCCCcHHHHHHHH
Confidence 677777776 899999999999999999
No 174
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.35 E-value=8.6e-05 Score=78.59 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=32.7
Q ss_pred EEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 328 ~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.++++.+.|++..+ ++++.+++| ++|+||||+|||||+++|
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g---vll~Gp~GtGKTtl~~~i 93 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG---VLLVGPPGVGKTHLARAV 93 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE---EEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe---EEEECCCcChHHHHHHHH
Confidence 35566777765444 778888776 899999999999999999
No 175
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.34 E-value=8.8e-06 Score=96.13 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=31.0
Q ss_pred eecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 334 KGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 334 ~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.-||...+ .+++.+..| ..++|+||||+||||++++|
T Consensus 42 ~i~G~~~~l~~l~~~i~~g-~~vll~Gp~GtGKTtlar~i 80 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK-RHVLLIGEPGTGKSMLGQAM 80 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHH
T ss_pred eEECchhhHhhccccccCC-CEEEEEeCCCCCHHHHHHHH
Confidence 34444444 788889999 89999999999999999999
No 176
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.34 E-value=3.5e-05 Score=84.13 Aligned_cols=45 Identities=24% Similarity=0.320 Sum_probs=34.1
Q ss_pred EEEeeeeeecCCcee--ccceeecCC------ceEEEEEcCCCCChhhHHhhH
Q 003258 327 MTVGSLSKGISDFPV--PIDIKVECE------TRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 327 l~~~~ls~~y~~~~v--~isl~l~~g------~~~~~I~GpNGsGKSTlLK~i 371 (835)
++.++++..||...+ ++++.+..+ .+.++|+||||+|||||++++
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~i 71 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHII 71 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHH
Confidence 445567777776554 677766542 257899999999999999999
No 177
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.33 E-value=0.0021 Score=69.74 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=26.3
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhHH
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~iG 372 (835)
+++|.+.++ ++++|+||||+||||++..++
T Consensus 97 ~l~~~~~~~-~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 97 RIDFKENRL-NIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp CCCCCTTSC-EEEEEESSTTSSHHHHHHHHH
T ss_pred CccccCCCC-eEEEEECCCCCCHHHHHHHHH
Confidence 566777778 999999999999999999983
No 178
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.33 E-value=5.3e-05 Score=75.34 Aligned_cols=20 Identities=45% Similarity=0.795 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
++++|+|||||||||++++|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L 21 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999999
No 179
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.33 E-value=4.6e-05 Score=76.83 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=20.8
Q ss_pred cCCceEEEEEcCCCCChhhHHhhH-Hhh
Q 003258 348 ECETRVVVITGPNTGGKTASMKTL-GLA 374 (835)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLK~i-Gli 374 (835)
.+| ++++|+||||||||||+++| |+.
T Consensus 2 ~~g-~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGP-RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCCCHHHHHHHHHhhC
Confidence 356 78999999999999999999 443
No 180
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.32 E-value=0.0012 Score=81.12 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
..++|+||+|+||||+++.++
T Consensus 192 ~~vlL~G~pG~GKT~la~~la 212 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLA 212 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHH
Confidence 457999999999999999994
No 181
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.29 E-value=0.00035 Score=76.49 Aligned_cols=119 Identities=14% Similarity=0.082 Sum_probs=69.5
Q ss_pred eecCCceEEEEEcCCCCChhhHHhhHHhhhhh-cccceeecCCCCCCchHHHHHHHHc-CCcc-cccCCcccchHHHH-H
Q 003258 346 KVECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADI-GDHQ-SLEQNLSTFSGHIS-R 421 (835)
Q Consensus 346 ~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~m-a~~G~~vP~~~~~~i~~~d~i~~~i-g~~~-~~~~~lstfSgg~~-r 421 (835)
-+.+| ++++|.|++|+|||||+..++..... ....+|+-.+. +.-.+..+++... +..- .+. -..||.++. +
T Consensus 42 Gl~~G-~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm-s~~ql~~Rlls~~~~v~~~~l~--~g~Ls~~e~~~ 117 (338)
T 4a1f_A 42 GFNKG-SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM-SAEQLALRALSDLTSINMHDLE--SGRLDDDQWEN 117 (338)
T ss_dssp SBCTT-CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS-CHHHHHHHHHHHHHCCCHHHHH--HTCCCHHHHHH
T ss_pred CCCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CHHHHHHHHHHHhhCCCHHHHh--cCCCCHHHHHH
Confidence 35678 99999999999999999998544332 11122222221 1222333443321 2211 111 136888877 7
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHh-cC-CcEEEEEecch
Q 003258 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DR-VGLAVVTTHYA 474 (835)
Q Consensus 422 l~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~-~~-~~~viitTH~~ 474 (835)
+..+...+.+++|+|.|+|+. ++.+-.+. ++.+. +. +..+|++=|..
T Consensus 118 l~~a~~~l~~~~l~I~d~~~~--si~~i~~~----ir~l~~~~gg~~lIVIDyLq 166 (338)
T 4a1f_A 118 LAKCFDHLSQKKLFFYDKSYV--RIEQIRLQ----LRKLKSQHKELGIAFIDYLQ 166 (338)
T ss_dssp HHHHHHHHHHSCEEEECCTTC--CHHHHHHH----HHHHHHHCTTEEEEEEEEEE
T ss_pred HHHHHHHHhcCCeEEeCCCCC--cHHHHHHH----HHHHHHhcCCCCEEEEechH
Confidence 888877777889999999864 44433332 33333 34 56777776653
No 182
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.27 E-value=0.00016 Score=71.83 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=28.7
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHH
Q 003258 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459 (835)
Q Consensus 422 l~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~ 459 (835)
...+.+++.++.++++| ++++|+.....+...+.+.
T Consensus 154 ~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 154 TDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 44566777788899999 9999999988888866654
No 183
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.25 E-value=8.4e-05 Score=74.33 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.0
Q ss_pred eecCCceEEEEEcCCCCChhhHHhhH
Q 003258 346 KVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 346 ~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
++.+| .+++|+|||||||||+++.+
T Consensus 2 ~i~~g-~~i~l~G~~GsGKSTl~~~L 26 (207)
T 2j41_A 2 DNEKG-LLIVLSGPSGVGKGTVRKRI 26 (207)
T ss_dssp --CCC-CEEEEECSTTSCHHHHHHHH
T ss_pred CCCCC-CEEEEECCCCCCHHHHHHHH
Confidence 56778 89999999999999999999
No 184
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.22 E-value=2.4e-05 Score=91.30 Aligned_cols=40 Identities=18% Similarity=0.349 Sum_probs=29.4
Q ss_pred eeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 330 GSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 330 ~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+++.+.|+...+ .+++.+ +| ..++|+||||+|||||+|+|
T Consensus 87 ~~vk~~i~~~~~l~~~~~~~-~g-~~vll~Gp~GtGKTtlar~i 128 (543)
T 3m6a_A 87 EKVKERILEYLAVQKLTKSL-KG-PILCLAGPPGVGKTSLAKSI 128 (543)
T ss_dssp HHHHHHHHHHHHHHHHSSSC-CS-CEEEEESSSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccC-CC-CEEEEECCCCCCHHHHHHHH
Confidence 344455543322 556666 56 79999999999999999999
No 185
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.19 E-value=0.0011 Score=70.47 Aligned_cols=101 Identities=18% Similarity=0.236 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhhcccce-eecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHH-HHHHHHHHc
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGL-YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV 429 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~-~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~-rl~~~~~la 429 (835)
..++|+||+|+||||+++.++-.. +. ++.... ..+ ...... +++.. +..+..+..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~-~~l---------------~~~~~~--~~~~~~~~~~~~~~~ 111 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATEC-----SATFLNISA-ASL---------------TSKYVG--DGEKLVRALFAVARH 111 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT-----TCEEEEEES-TTT---------------SSSSCS--CHHHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh-----CCCeEEeeH-HHH---------------hhcccc--hHHHHHHHHHHHHHH
Confidence 678999999999999999993211 11 111111 010 011111 12333 444445556
Q ss_pred CCCcEEEEeCCCCCCCHHhH------HHHHHHHHHHHhc-------CCcEEEEEecchh
Q 003258 430 SRESLVLIDEIGSGTDPSEG------VALATSILQYLRD-------RVGLAVVTTHYAD 475 (835)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~------~aL~~all~~l~~-------~~~~viitTH~~e 475 (835)
..|.+|++||+.+.++.... ..+...++..+.. .+..+|.+|+..+
T Consensus 112 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 112 MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 78999999999876654321 2222234433332 2346788888764
No 186
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.16 E-value=0.0012 Score=71.48 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=71.6
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhhhc-----------------ccceeecCCCCCCchHHHHHHHHcCCccc--
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-----------------KAGLYLPAKNHPRLPWFDLILADIGDHQS-- 407 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma-----------------~~G~~vP~~~~~~i~~~d~i~~~ig~~~~-- 407 (835)
+++| +++.|.||+|+|||||+..++....+. ...+|+..+......-+.+++..+|....
T Consensus 95 l~~g-~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 95 LESQ-SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp EETT-EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred ccCC-eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 5678 999999999999999999986543222 22345555542222223344555665321
Q ss_pred ccC--CcccchHHHH-H-HHHHHHHc---CCCcEEEEeCCCCCCC--------HHhH----HHHHHHHHHHHhcCCcEEE
Q 003258 408 LEQ--NLSTFSGHIS-R-IVDILELV---SRESLVLIDEIGSGTD--------PSEG----VALATSILQYLRDRVGLAV 468 (835)
Q Consensus 408 ~~~--~lstfSgg~~-r-l~~~~~la---~~~~LlLLDEp~~glD--------p~~~----~aL~~all~~l~~~~~~vi 468 (835)
+++ ....++..+. . +..+..++ .++++|++|..+.-.. ..++ ..+...+.....+.+++||
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi 253 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVL 253 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 000 1122344432 2 22222222 5689999999986432 2222 2334445555566788999
Q ss_pred EEecch
Q 003258 469 VTTHYA 474 (835)
Q Consensus 469 itTH~~ 474 (835)
++.|-.
T Consensus 254 ~~nq~~ 259 (322)
T 2i1q_A 254 VTNQVS 259 (322)
T ss_dssp EEECEE
T ss_pred EECcee
Confidence 988853
No 187
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.13 E-value=0.00016 Score=81.60 Aligned_cols=40 Identities=20% Similarity=0.399 Sum_probs=31.8
Q ss_pred EEEeeeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 327 l~~~~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+.+.|+ ++|++.. ++.+..+ .+++|+||||+||||+|++|
T Consensus 7 l~~~~~-~~~~~~~---~~~~~~~-~~~~i~G~nG~GKstll~ai 46 (430)
T 1w1w_A 7 LELSNF-KSYRGVT---KVGFGES-NFTSIIGPNGSGKSNMMDAI 46 (430)
T ss_dssp EEEESC-SSCCSEE---EEECTTC-SEEEEECSTTSSHHHHHHHH
T ss_pred EEEeCE-EEECCce---eEEecCC-CEEEEECCCCCCHHHHHHHH
Confidence 567788 6786532 2456666 79999999999999999999
No 188
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.13 E-value=0.00012 Score=73.42 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=27.2
Q ss_pred eeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 331 SLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 331 ~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
|+++.++.... ..++...+| .+++|+|||||||||+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g-~~i~l~G~sGsGKSTl~~~L 45 (200)
T 3uie_A 4 NIKWHECSVEKVDRQRLLDQKG-CVIWVTGLSGSGKSTLACAL 45 (200)
T ss_dssp ------CCCCHHHHHHHHTSCC-EEEEEECSTTSSHHHHHHHH
T ss_pred CCcccccccCHHHHHHhcCCCC-eEEEEECCCCCCHHHHHHHH
Confidence 44444443232 455666778 99999999999999999999
No 189
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.05 E-value=0.00046 Score=70.04 Aligned_cols=92 Identities=14% Similarity=0.200 Sum_probs=50.6
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhh-cccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcC
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVS 430 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~m-a~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~ 430 (835)
..++|+||+|+||||+++.++-.... ...-.++.... + . +.+.. +.....
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~---~------~------~~~~~--------------~~~~~~ 103 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI---H------A------SISTA--------------LLEGLE 103 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG---G------G------GSCGG--------------GGTTGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH---H------H------HHHHH--------------HHHhcc
Confidence 68999999999999999999322111 01112222211 0 0 00000 011235
Q ss_pred CCcEEEEeCCCCCCCHH-hHHHHHHHHHHHHhcCCcE-EEEEecc
Q 003258 431 RESLVLIDEIGSGTDPS-EGVALATSILQYLRDRVGL-AVVTTHY 473 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~-~~~aL~~all~~l~~~~~~-viitTH~ 473 (835)
++.+|++||+..-.... ....|.. +++.+.+.+.. +|++|+.
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~-~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFD-LYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHH-HHHHHHHHCSCEEEEEESS
T ss_pred CCCEEEEeccccccCCHHHHHHHHH-HHHHHHHcCCCeEEEEcCC
Confidence 68999999986643322 2445555 55555544544 7787775
No 190
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.03 E-value=0.00012 Score=84.65 Aligned_cols=38 Identities=16% Similarity=0.327 Sum_probs=31.7
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCC
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN 388 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~ 388 (835)
.+++.+..| ..++|+|||||||||||+++ +|+..|..+
T Consensus 252 ~l~~~v~~g-~~i~I~GptGSGKTTlL~aL--------~~~i~~~~g 289 (511)
T 2oap_1 252 YLWLAIEHK-FSAIVVGETASGKTTTLNAI--------MMFIPPDAK 289 (511)
T ss_dssp HHHHHHHTT-CCEEEEESTTSSHHHHHHHH--------GGGSCTTCC
T ss_pred HHHHHHhCC-CEEEEECCCCCCHHHHHHHH--------HhhCCCCCC
Confidence 677888899 78999999999999999999 665555443
No 191
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.01 E-value=0.00069 Score=73.09 Aligned_cols=101 Identities=14% Similarity=0.189 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhh-cccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcC
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVS 430 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~m-a~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~ 430 (835)
..+.|+||+|+||||+++.++-...- ...-.++.+.. +...+...+. .+ .+........
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~-------------~~--~~~~~~~~~~ 97 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD-----FAQAMVEHLK-------------KG--TINEFRNMYK 97 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH-----HHHHHHHHHH-------------HT--CHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH-----HHHHHHHHHH-------------cC--cHHHHHHHhc
Confidence 56899999999999999999432211 11111222110 1111111110 00 0111112224
Q ss_pred CCcEEEEeCCCCCC-CHHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 003258 431 RESLVLIDEIGSGT-DPSEGVALATSILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 431 ~~~LlLLDEp~~gl-Dp~~~~aL~~all~~l~~~~~~viitTH~ 473 (835)
++.+|++||+..-. ++.....+.. +++.+.+.+..+|++|+.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~-~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFH-IFNTLYLLEKQIILASDR 140 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHH-HHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEcCcccccCChHHHHHHHH-HHHHHHHCCCeEEEEecC
Confidence 58999999997632 3345556665 555566667777777764
No 192
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.98 E-value=0.0071 Score=66.86 Aligned_cols=122 Identities=16% Similarity=0.216 Sum_probs=66.2
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhh-hcccceeecCCCCCCchHHHHHHHHcCCccc-ccCCcccchHHHH-HHH
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDHQS-LEQNLSTFSGHIS-RIV 423 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~-ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~-~~~~lstfSgg~~-rl~ 423 (835)
+++| +++.|.||.|+|||||.-.+..... .....+|+..+.... .. ....+|.... +. -....+.++. .+.
T Consensus 71 l~~G-~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~-~~---~a~~~g~d~~~l~-i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 71 IPRG-RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD-PV---YARALGVNTDELL-VSQPDNGEQALEIM 144 (366)
T ss_dssp EETT-SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-HH---HHHHTTCCGGGCE-EECCSSHHHHHHHH
T ss_pred ccCC-cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh-HH---HHHHcCCCHHHce-eecCCcHHHHHHHH
Confidence 4577 8999999999999999988843322 223345666654222 21 2455565321 10 0011123222 222
Q ss_pred HHHHHcCCCcEEEEeCCCCCCC-H--H---------hH-HHHHH---HHHHHHhcCCcEEEEEecch
Q 003258 424 DILELVSRESLVLIDEIGSGTD-P--S---------EG-VALAT---SILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 424 ~~~~la~~~~LlLLDEp~~glD-p--~---------~~-~aL~~---all~~l~~~~~~viitTH~~ 474 (835)
..+....++++|++|.++.-.. . . .. ..+.. .+.....+.+++||+++|-.
T Consensus 145 ~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~ 211 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVR 211 (366)
T ss_dssp HHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-
T ss_pred HHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 2222236789999999987652 1 0 11 11222 23333356788999998874
No 193
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.97 E-value=0.001 Score=76.03 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChhhHHhhHHh
Q 003258 352 RVVVITGPNTGGKTASMKTLGL 373 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGl 373 (835)
.-++|+||+|+||||+.+.++-
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999943
No 194
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.95 E-value=0.0013 Score=71.30 Aligned_cols=106 Identities=18% Similarity=0.240 Sum_probs=56.4
Q ss_pred eecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHH
Q 003258 346 KVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI 425 (835)
Q Consensus 346 ~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~ 425 (835)
-+.+| .++.|.||.|+|||||...++.. .....+|+.......+. ..+ .. ....+..+
T Consensus 119 Gi~~g-sviLI~GpPGsGKTtLAlqlA~~--~G~~VlyIs~~~eE~v~----------~~~------~~---le~~l~~i 176 (331)
T 2vhj_A 119 HRYAS-GMVIVTGKGNSGKTPLVHALGEA--LGGKDKYATVRFGEPLS----------GYN------TD---FNVFVDDI 176 (331)
T ss_dssp EEEES-EEEEEECSCSSSHHHHHHHHHHH--HHTTSCCEEEEBSCSST----------TCB------CC---HHHHHHHH
T ss_pred CCCCC-cEEEEEcCCCCCHHHHHHHHHHh--CCCCEEEEEecchhhhh----------hhh------cC---HHHHHHHH
Confidence 34566 77899999999999999999543 21222344431000110 000 11 11122222
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHhH-----------HHHHHHHHHHHhcCCcEEEEEecc
Q 003258 426 LELVSRESLVLIDEIGSGTDPSEG-----------VALATSILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 426 ~~la~~~~LlLLDEp~~glDp~~~-----------~aL~~all~~l~~~~~~viitTH~ 473 (835)
...+.+.++|++||.+.-...... ..+...+...+.+.++++|++|+-
T Consensus 177 ~~~l~~~~LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 177 ARAMLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp HHHHHHCSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHhhCCEEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 222222239999999875332222 233333555556678999999884
No 195
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.95 E-value=0.00032 Score=69.24 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.6
Q ss_pred CCceEEEEEcCCCCChhhHHhhH
Q 003258 349 CETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.| ++++|+||||||||||++.+
T Consensus 4 ~g-~~i~i~GpsGsGKSTL~~~L 25 (180)
T 1kgd_A 4 MR-KTLVLLGAHGVGRRHIKNTL 25 (180)
T ss_dssp CC-CEEEEECCTTSSHHHHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHHHHH
Confidence 46 79999999999999999999
No 196
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.94 E-value=0.0012 Score=67.95 Aligned_cols=124 Identities=15% Similarity=0.177 Sum_probs=62.0
Q ss_pred cCCceEEEEEcCCCCChhhHHhhHHhhhhhc-----ccc--eeecCCCCCCchHHHHHHHHcCCc------------ccc
Q 003258 348 ECETRVVVITGPNTGGKTASMKTLGLASLMS-----KAG--LYLPAKNHPRLPWFDLILADIGDH------------QSL 408 (835)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma-----~~G--~~vP~~~~~~i~~~d~i~~~ig~~------------~~~ 408 (835)
..| +.++|+||+||||||++..+-+-.... ..+ +..|... .....++++...++.. ...
T Consensus 74 ~~g-~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~-la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~ 151 (235)
T 3llm_A 74 SQN-SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRI-SAVSVAERVAFERGEEPGKSCGYSVRFESIL 151 (235)
T ss_dssp HHC-SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHH-HHHHHHHHHHHTTTCCTTSSEEEEETTEEEC
T ss_pred hcC-CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchH-HHHHHHHHHHHHhccccCceEEEeechhhcc
Confidence 456 789999999999999988772221111 111 1223221 1122334443333321 000
Q ss_pred ---cCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCC-CCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003258 409 ---EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS-GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (835)
Q Consensus 409 ---~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~-glDp~~~~aL~~all~~l~~~~~~viitTH~~e 475 (835)
...+--.+.|+. +. +.....+-++|++||.-. ++|......+...++....+....++-+|...+
T Consensus 152 ~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~ 221 (235)
T 3llm_A 152 PRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTS 221 (235)
T ss_dssp CCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCH
T ss_pred CCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHH
Confidence 011111233333 32 233578889999999965 566655544444455443222223344566644
No 197
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.89 E-value=0.00028 Score=73.84 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=27.4
Q ss_pred cCCceEEEEEcCCCCChhhHHhhHHhhhhhccc---ceeecCCC
Q 003258 348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKA---GLYLPAKN 388 (835)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~---G~~vP~~~ 388 (835)
.+| .+++|+|||||||||++|+| + |++.|..+
T Consensus 25 ~~g-~~I~I~G~~GsGKSTl~k~L--------a~~Lg~~~~d~g 59 (252)
T 4e22_A 25 AIA-PVITVDGPSGAGKGTLCKAL--------AESLNWRLLDSG 59 (252)
T ss_dssp TTS-CEEEEECCTTSSHHHHHHHH--------HHHTTCEEEEHH
T ss_pred CCC-cEEEEECCCCCCHHHHHHHH--------HHhcCCCcCCCC
Confidence 456 89999999999999999999 5 77777654
No 198
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.88 E-value=0.00056 Score=75.55 Aligned_cols=31 Identities=32% Similarity=0.321 Sum_probs=27.0
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhHHhh
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLA 374 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli 374 (835)
++++++.+| +++|+||||+||||+|++|..+
T Consensus 19 ~~~~~~~~g--~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 19 PGTLNFPEG--VTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp SEEEECCSE--EEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEcCC--eEEEECCCCCChhHHHHHHHHh
Confidence 678888776 8999999999999999999443
No 199
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.87 E-value=0.00027 Score=76.10 Aligned_cols=36 Identities=8% Similarity=0.057 Sum_probs=28.8
Q ss_pred eeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC
Q 003258 345 IKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (835)
Q Consensus 345 l~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~ 389 (835)
|.+..| ++++|+||||+||||||++| +|+..|..|.
T Consensus 164 f~~l~g-eiv~l~G~sG~GKSTll~~l--------~g~~~~~~G~ 199 (301)
T 1u0l_A 164 KEYLKG-KISTMAGLSGVGKSSLLNAI--------NPGLKLRVSE 199 (301)
T ss_dssp HHHHSS-SEEEEECSTTSSHHHHHHHH--------STTCCCC---
T ss_pred HHHhcC-CeEEEECCCCCcHHHHHHHh--------cccccccccc
Confidence 344567 89999999999999999999 8888888774
No 200
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.86 E-value=0.00041 Score=69.55 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=21.2
Q ss_pred ceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 344 DIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 344 sl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.+...+| .+++|+|||||||||++|+|
T Consensus 23 ~m~~~~g-~~i~l~G~~GsGKSTl~~~L 49 (200)
T 4eun_A 23 MMTGEPT-RHVVVMGVSGSGKTTIAHGV 49 (200)
T ss_dssp -----CC-CEEEEECCTTSCHHHHHHHH
T ss_pred hhcCCCC-cEEEEECCCCCCHHHHHHHH
Confidence 3445677 89999999999999999999
No 201
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.84 E-value=0.0018 Score=70.72 Aligned_cols=119 Identities=17% Similarity=0.071 Sum_probs=62.7
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhh-h------cccceeecCCCC-CCchHHHHHHHHcCCcccccCCcccchHHH-H-H
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASL-M------SKAGLYLPAKNH-PRLPWFDLILADIGDHQSLEQNLSTFSGHI-S-R 421 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~-m------a~~G~~vP~~~~-~~i~~~d~i~~~ig~~~~~~~~lstfSgg~-~-r 421 (835)
..++|+||.|+||||+++.+.-... . ...-.++.+... ....++..++..+|... +....+.+. . +
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~ 120 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRV----PFTGLSVGEVYER 120 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCC----CSSCCCHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCC----CCCCCCHHHHHHH
Confidence 6789999999999999999932211 0 001122222221 12234566777665421 111222222 2 3
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHH-hHHHHHHHHHHHHh----cCCcEEEEEecchh
Q 003258 422 IVDILELVSRESLVLIDEIGSGTDPS-EGVALATSILQYLR----DRVGLAVVTTHYAD 475 (835)
Q Consensus 422 l~~~~~la~~~~LlLLDEp~~glDp~-~~~aL~~all~~l~----~~~~~viitTH~~e 475 (835)
+...+.....+.+|+|||+-.-.+.. ....|.. +++... ..+.++|++|+...
T Consensus 121 l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~-l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 121 LVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYR-ITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHH-HHHGGGCC-----CEEEEECSCST
T ss_pred HHHHHhccCCeEEEEEccHhhhcccCCCChHHHh-HhhchhhcCCCceEEEEEEECCCc
Confidence 33333333456799999997653331 2233333 555443 33568889998864
No 202
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.79 E-value=0.00052 Score=66.04 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=22.5
Q ss_pred ceeecCCceEEEEEcCCCCChhhHHhhHHh
Q 003258 344 DIKVECETRVVVITGPNTGGKTASMKTLGL 373 (835)
Q Consensus 344 sl~l~~g~~~~~I~GpNGsGKSTlLK~iGl 373 (835)
++.+.+ .+.+|+||||+||||+|.+|..
T Consensus 18 ~i~f~~--g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 18 VVEFKE--GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEECCS--EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEcCC--CeEEEECCCCCCHHHHHHHHHH
Confidence 344444 4889999999999999999943
No 203
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.79 E-value=0.0022 Score=69.33 Aligned_cols=121 Identities=12% Similarity=0.067 Sum_probs=68.2
Q ss_pred eecCCceEEEEEcCCCCChhhHHhhHHhhhhhc-ccceeecCCCCCCchHHHHHHHHc-CCc-ccccCCcccchHHHH-H
Q 003258 346 KVECETRVVVITGPNTGGKTASMKTLGLASLMS-KAGLYLPAKNHPRLPWFDLILADI-GDH-QSLEQNLSTFSGHIS-R 421 (835)
Q Consensus 346 ~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma-~~G~~vP~~~~~~i~~~d~i~~~i-g~~-~~~~~~lstfSgg~~-r 421 (835)
-+.+| ++++|.|+.|+|||||+..++...... ...+|+..+. ..-.+..+++... |.. +.+...-..||.++. +
T Consensus 64 Gl~~G-~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~-s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~ 141 (315)
T 3bh0_A 64 GYKRR-NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLIVTAGSINAQKIKAARRDFASEDWGK 141 (315)
T ss_dssp SBCTT-CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS-CHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHH
T ss_pred CCCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC-CHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHH
Confidence 35788 999999999999999999985443321 2233443332 2222344444321 222 111111122666655 7
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcE--EEEEecc
Q 003258 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL--AVVTTHY 473 (835)
Q Consensus 422 l~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~--viitTH~ 473 (835)
+..+...+.+.++++.|+|+ +++.+ |...+.....+.+.. +|++-|.
T Consensus 142 l~~a~~~l~~~~i~i~d~~~--~~~~~---i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 142 LSMAIGEISNSNINIFDKAG--QSVNY---IWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HHHHHHHHHTSCEEEECCSC--CBHHH---HHHHHHHHHHTSSSCCEEEEEECG
T ss_pred HHHHHHHHhCCCEEEECCCC--CCHHH---HHHHHHHHHHhcCCCCeEEEEeCc
Confidence 77776666678899999986 44433 333222222334556 7776664
No 204
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.75 E-value=0.00073 Score=77.80 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=29.5
Q ss_pred EeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 329 ~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
++++...|.+..+ ++++.+++| ++|+||||+|||||+|+|
T Consensus 43 l~~lv~~l~~~~~~~~lg~~ip~G---vLL~GppGtGKTtLaraI 84 (499)
T 2dhr_A 43 LKEIVEFLKNPSRFHEMGARIPKG---VLLVGPPGVGKTHLARAV 84 (499)
T ss_dssp HHHHHHHHHCGGGTTTTSCCCCSE---EEEECSSSSSHHHHHHHH
T ss_pred HHHHHHHhhchhhhhhccCCCCce---EEEECCCCCCHHHHHHHH
Confidence 3444444543333 677777766 899999999999999999
No 205
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.74 E-value=0.00042 Score=70.12 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.2
Q ss_pred cCCceEEEEEcCCCCChhhHHhhH
Q 003258 348 ECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.+| .+++|+||||+||||+++.+
T Consensus 6 ~~g-~~i~l~GpsGsGKsTl~~~L 28 (208)
T 3tau_A 6 ERG-LLIVLSGPSGVGKGTVREAV 28 (208)
T ss_dssp CCC-CEEEEECCTTSCHHHHHHHH
T ss_pred CCC-cEEEEECcCCCCHHHHHHHH
Confidence 357 89999999999999999999
No 206
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.74 E-value=0.00059 Score=68.36 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=21.4
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
++||.+.++ .+++|+||+||||||+.+.+
T Consensus 17 ~~~~~~~~~-~~i~l~G~~GsGKsTl~~~L 45 (199)
T 3vaa_A 17 NLYFQSNAM-VRIFLTGYMGAGKTTLGKAF 45 (199)
T ss_dssp -------CC-CEEEEECCTTSCHHHHHHHH
T ss_pred ceeEecCCC-CEEEEEcCCCCCHHHHHHHH
Confidence 788999998 89999999999999999999
No 207
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.74 E-value=0.0016 Score=69.85 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.2
Q ss_pred eecCCceEEEEEcCCCCChhhHHhhHH
Q 003258 346 KVECETRVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 346 ~l~~g~~~~~I~GpNGsGKSTlLK~iG 372 (835)
.+..+ ..++|+||+|+||||+++.++
T Consensus 45 ~~~~~-~~vLL~Gp~GtGKT~la~ala 70 (301)
T 3cf0_A 45 GMTPS-KGVLFYGPPGCGKTLLAKAIA 70 (301)
T ss_dssp CCCCC-SEEEEECSSSSSHHHHHHHHH
T ss_pred CCCCC-ceEEEECCCCcCHHHHHHHHH
Confidence 34556 779999999999999999993
No 208
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.72 E-value=0.0036 Score=62.75 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
..++|+||.|+||||+++.+
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~ 65 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLL 65 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 209
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.72 E-value=0.0059 Score=68.81 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=29.0
Q ss_pred eeeeecCCceeccceeecCCceEEEEEcCCCCChhhHHhhHH
Q 003258 331 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 331 ~ls~~y~~~~v~isl~l~~g~~~~~I~GpNGsGKSTlLK~iG 372 (835)
++++.|++..-++++. ++ .+++|+||||+||||++..++
T Consensus 81 ~L~~~~~~~~~~i~l~--~~-~vi~i~G~~GsGKTT~~~~LA 119 (425)
T 2ffh_A 81 ALKEALGGEARLPVLK--DR-NLWFLVGLQGSGKTTTAAKLA 119 (425)
T ss_dssp HHHHHTTSSCCCCCCC--SS-EEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHhCCCcccccCC--CC-eEEEEECCCCCCHHHHHHHHH
Confidence 3445555433356666 66 899999999999999999983
No 210
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.68 E-value=0.00026 Score=76.47 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=25.6
Q ss_pred eeecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC
Q 003258 345 IKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (835)
Q Consensus 345 l~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~ 389 (835)
+.+.+| ++++|+||||+|||||+++| +|...|..+.
T Consensus 168 ~~~~~G-~~~~lvG~sG~GKSTLln~L--------~g~~~~~~G~ 203 (307)
T 1t9h_A 168 IPHFQD-KTTVFAGQSGVGKSSLLNAI--------SPELGLRTNE 203 (307)
T ss_dssp GGGGTT-SEEEEEESHHHHHHHHHHHH--------CC--------
T ss_pred HhhcCC-CEEEEECCCCCCHHHHHHHh--------cccccccccc
Confidence 556678 89999999999999999999 8887777663
No 211
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.68 E-value=0.00063 Score=74.01 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=28.4
Q ss_pred eecCCcee--ccceeecCCceE--EEEEcCCCCChhhHHhhH
Q 003258 334 KGISDFPV--PIDIKVECETRV--VVITGPNTGGKTASMKTL 371 (835)
Q Consensus 334 ~~y~~~~v--~isl~l~~g~~~--~~I~GpNGsGKSTlLK~i 371 (835)
..||...+ .++..+..| ++ ++++||||+||||+++.+
T Consensus 26 ~~~g~~~~~~~L~~~i~~g-~~~~~ll~Gp~G~GKTtla~~l 66 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEG-KLPHLLFYGPPGTGKTSTIVAL 66 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTT-CCCCEEEECSSSSSHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHH
Confidence 33444333 666677777 66 999999999999999999
No 212
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.67 E-value=0.00079 Score=72.66 Aligned_cols=101 Identities=18% Similarity=0.189 Sum_probs=52.0
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhhcccce---eecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHH
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGL---YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILEL 428 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~---~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~l 428 (835)
..+.|.||.|+|||+|++.++-.... ..|. ++.+. .++..+...+... . ...+ +..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~~-----~l~~~l~~~~~~~-~----~~~~----------~~~ 211 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHFP-----SFAIDVKNAISNG-S----VKEE----------IDA 211 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEHH-----HHHHHHHCCCC---------CCT----------THH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEHH-----HHHHHHHHHhccc-h----HHHH----------HHH
Confidence 67899999999999999999543320 1221 11111 1122222111110 0 0111 112
Q ss_pred cCCCcEEEEeCCCC-CCCHHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 003258 429 VSRESLVLIDEIGS-GTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 429 a~~~~LlLLDEp~~-glDp~~~~aL~~all~~l~~~~~~viitTH~ 473 (835)
..++++|+|||++. .+++.....|...+++.....+..+|+||+.
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~ 257 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNY 257 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 23678999999965 3344444445544665543335678888886
No 213
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.65 E-value=0.0051 Score=63.83 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhHH
Q 003258 353 VVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~iG 372 (835)
-++|+||+|+||||+++.++
T Consensus 47 ~vll~G~~GtGKT~la~~la 66 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIA 66 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHH
Confidence 48899999999999999993
No 214
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.63 E-value=0.0013 Score=80.30 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=23.2
Q ss_pred eeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 345 IKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 345 l~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+.+..+ +.++|+||||+||||++++|
T Consensus 233 l~i~~~-~~vLL~Gp~GtGKTtLaral 258 (806)
T 1ypw_A 233 IGVKPP-RGILLYGPPGTGKTLIARAV 258 (806)
T ss_dssp SCCCCC-CEEEECSCTTSSHHHHHHHH
T ss_pred cCCCCC-CeEEEECcCCCCHHHHHHHH
Confidence 456777 78999999999999999999
No 215
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.57 E-value=0.018 Score=61.73 Aligned_cols=39 Identities=23% Similarity=0.229 Sum_probs=28.9
Q ss_pred eeeecCCceec-cceeecCCceEEEEEcCCCCChhhHHhhHH
Q 003258 332 LSKGISDFPVP-IDIKVECETRVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 332 ls~~y~~~~v~-isl~l~~g~~~~~I~GpNGsGKSTlLK~iG 372 (835)
+.+.|++...+ +++... + .+++++||||+||||++..++
T Consensus 80 l~~~~~~~~~~~i~~~~~-~-~vi~i~G~~G~GKTT~~~~la 119 (297)
T 1j8m_F 80 LSNLFGGDKEPKVIPDKI-P-YVIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp HHHHTTCSCCCCCSCSSS-S-EEEEEECSSCSSTTHHHHHHH
T ss_pred HHHHhccccccccccCCC-C-eEEEEECCCCCCHHHHHHHHH
Confidence 44445443335 666655 6 899999999999999999983
No 216
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.55 E-value=0.00072 Score=72.80 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=27.3
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCC
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~ 389 (835)
+-.| ++++|+||||+|||||+++| . ...|..|.
T Consensus 162 ~l~G-~i~~l~G~sG~GKSTLln~l--------~-~~~~~~G~ 194 (302)
T 2yv5_A 162 YLEG-FICILAGPSGVGKSSILSRL--------T-GEELRTQE 194 (302)
T ss_dssp HTTT-CEEEEECSTTSSHHHHHHHH--------H-SCCCCCSC
T ss_pred hccC-cEEEEECCCCCCHHHHHHHH--------H-HhhCcccc
Confidence 3457 89999999999999999999 6 56666664
No 217
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.54 E-value=0.0014 Score=67.56 Aligned_cols=126 Identities=22% Similarity=0.146 Sum_probs=65.3
Q ss_pred CCceEEEEEcCCCCChhhHHhhHHhhhhhcccce---eecCCCCCCchHHHHHHHHcCCcccccCCcccchHH---HHHH
Q 003258 349 CETRVVVITGPNTGGKTASMKTLGLASLMSKAGL---YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH---ISRI 422 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~---~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg---~~rl 422 (835)
+|.-.+.+.|+-|+||||++-.+|.... +.|. ++-.+.......+.. .-|+.. +....-.+.+. +..+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~--~~G~~V~v~d~D~q~~~~~~al---~~gl~~-~~~~~~~~~~~~~~e~~l 77 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQL--RQGVRVMAGVVETHGRAETEAL---LNGLPQ-QPLLRTEYRGMTLEEMDL 77 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCTTCHHHHHH---HTTSCB-CCCEEEEETTEEEEECCH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHH--HCCCCEEEEEeCCCCChhHHHH---hcCccc-cCcceeecCCcccccccH
Confidence 3533578899999999999776643322 2332 222222112222221 112221 11111112211 1112
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcc
Q 003258 423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK 482 (835)
Q Consensus 423 ~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~~~~ 482 (835)
..++. ..|+++|+|||+.--.+..+..+....+..+...+.-++.|+|-..+..+.+-
T Consensus 78 ~~~L~--~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~ 135 (228)
T 2r8r_A 78 DALLK--AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQ 135 (228)
T ss_dssp HHHHH--HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHH
T ss_pred HHHHh--cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHH
Confidence 22222 47999999999965344444444444555566668899999997655554433
No 218
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.51 E-value=0.0019 Score=65.34 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=23.1
Q ss_pred cceeecCCceEEEEEcCCCCChhhHHhhHHh
Q 003258 343 IDIKVECETRVVVITGPNTGGKTASMKTLGL 373 (835)
Q Consensus 343 isl~l~~g~~~~~I~GpNGsGKSTlLK~iGl 373 (835)
.++.+.+ .+.+|+||||+||||+|.+|..
T Consensus 17 ~~i~f~~--~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 17 TVVEFKE--GINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEECCS--EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEeCC--CeEEEEcCCCCCHHHHHHHHHH
Confidence 3445554 4899999999999999999943
No 219
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.48 E-value=0.00033 Score=76.22 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-+++|+||||||||||+++|
T Consensus 93 ~iigI~GpsGSGKSTl~~~L 112 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVL 112 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 38999999999999999999
No 220
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.48 E-value=0.0009 Score=68.78 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=22.1
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhH
Q 003258 347 VECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
..+| .+++|.|||||||||++++|
T Consensus 17 ~~~g-~~i~i~G~~GsGKSTl~~~L 40 (230)
T 2vp4_A 17 GTQP-FTVLIEGNIGSGKTTYLNHF 40 (230)
T ss_dssp TCCC-EEEEEECSTTSCHHHHHHTT
T ss_pred CCCc-eEEEEECCCCCCHHHHHHHH
Confidence 3567 89999999999999999999
No 221
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.46 E-value=0.0076 Score=63.28 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.1
Q ss_pred cCCceEEEEEcCCCCChhhHHhhH
Q 003258 348 ECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
..+ ..+.|.||.|+||||+++.+
T Consensus 49 ~~~-~~~ll~G~~GtGKT~la~~l 71 (285)
T 3h4m_A 49 EPP-KGILLYGPPGTGKTLLAKAV 71 (285)
T ss_dssp CCC-SEEEEESSSSSSHHHHHHHH
T ss_pred CCC-CeEEEECCCCCcHHHHHHHH
Confidence 344 56899999999999999999
No 222
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.46 E-value=0.0013 Score=67.62 Aligned_cols=46 Identities=15% Similarity=0.041 Sum_probs=30.0
Q ss_pred HHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhc--CCcEEEEEecc
Q 003258 427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD--RVGLAVVTTHY 473 (835)
Q Consensus 427 ~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~--~~~~viitTH~ 473 (835)
....+++++|+..+.+..+..+...+.. +.+.+.. ...++|+.||-
T Consensus 108 ~~~~~~~~~l~v~d~~~~~~~~~~~l~~-~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 108 LTSPGPHALLLVVPLGRYTEEEHKATEK-ILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp HTTTCCSEEEEEEETTCCSSHHHHHHHH-HHHHHHHHHGGGEEEEEECG
T ss_pred hcCCCCcEEEEEeeCCCCCHHHHHHHHH-HHHHhhhhccceEEEEEeCC
Confidence 3456778888888877777766655554 5544432 12588888884
No 223
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.46 E-value=0.0013 Score=64.03 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.6
Q ss_pred CCceEEEEEcCCCCChhhHHhhH
Q 003258 349 CETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+| .+++|+|||||||||+++.+
T Consensus 7 ~g-~~i~l~G~~GsGKSTl~~~l 28 (175)
T 1knq_A 7 DH-HIYVLMGVSGSGKSAVASEV 28 (175)
T ss_dssp TS-EEEEEECSTTSCHHHHHHHH
T ss_pred CC-cEEEEEcCCCCCHHHHHHHH
Confidence 46 89999999999999999999
No 224
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.40 E-value=0.0011 Score=72.69 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=32.1
Q ss_pred EeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 329 ~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++.+.|+...+ ++++...++ .+++|+|+||+|||||++.+
T Consensus 33 ~~~~~~~~~~~~~~~~l~~~~~~~-~~i~i~G~~g~GKSTl~~~l 76 (341)
T 2p67_A 33 SRHPRHQALSTQLLDAIMPYCGNT-LRLGVTGTPGAGKSTFLEAF 76 (341)
T ss_dssp CCCHHHHHHHHHHHHHHGGGCSCS-EEEEEEECTTSCHHHHHHHH
T ss_pred cCCchhhhHHHHHHHhCCcccCCC-EEEEEEcCCCCCHHHHHHHH
Confidence 3344444543333 677878888 89999999999999999999
No 225
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.40 E-value=0.00096 Score=67.04 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=22.0
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhH
Q 003258 347 VECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
..++ .+++|+|||||||||+++.+
T Consensus 19 ~~~~-~~i~i~G~~GsGKstl~~~l 42 (201)
T 1rz3_A 19 TAGR-LVLGIDGLSRSGKTTLANQL 42 (201)
T ss_dssp CSSS-EEEEEEECTTSSHHHHHHHH
T ss_pred cCCC-eEEEEECCCCCCHHHHHHHH
Confidence 4567 89999999999999999999
No 226
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.37 E-value=0.0012 Score=64.05 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+|||||||||+++.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 67999999999999999999
No 227
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.36 E-value=0.0026 Score=70.32 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=25.6
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhHHhhh
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLAS 375 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~ 375 (835)
..++++.+| +.+|+||||+||||+|-.|.++.
T Consensus 18 ~~~i~f~~g--l~vi~G~NGaGKT~ileAI~~~l 49 (371)
T 3auy_A 18 NSRIKFEKG--IVAIIGENGSGKSSIFEAVFFAL 49 (371)
T ss_dssp EEEEECCSE--EEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEecCCC--eEEEECCCCCCHHHHHHHHHHHH
Confidence 445566555 89999999999999999996543
No 228
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.32 E-value=0.0016 Score=65.85 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=21.4
Q ss_pred cCCceEEEEEcCCCCChhhHHhhH
Q 003258 348 ECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.+| ++++|+||||+|||||++.|
T Consensus 17 ~~g-~~ivl~GPSGaGKsTL~~~L 39 (197)
T 3ney_A 17 QGR-KTLVLIGASGVGRSHIKNAL 39 (197)
T ss_dssp CSC-CEEEEECCTTSSHHHHHHHH
T ss_pred CCC-CEEEEECcCCCCHHHHHHHH
Confidence 467 89999999999999999998
No 229
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.31 E-value=0.029 Score=60.62 Aligned_cols=123 Identities=14% Similarity=0.151 Sum_probs=68.2
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhhh---cccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHH
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASLM---SKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIV 423 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~m---a~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~ 423 (835)
+++| ++.|.||.|+|||||+-++...... ....+|+-.++.... ....++|..-+---.....++++..+.
T Consensus 26 l~~G--iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~----~ra~~lGvd~d~llv~~~~~~E~~~l~ 99 (333)
T 3io5_A 26 MQSG--LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP----AYLRSMGVDPERVIHTPVQSLEQLRID 99 (333)
T ss_dssp BCSE--EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH----HHHHHTTCCGGGEEEEECSBHHHHHHH
T ss_pred CcCC--eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH----HHHHHhCCCHHHeEEEcCCCHHHHHHH
Confidence 3455 6899999999999997776222211 223456666653322 236677764211011122345543233
Q ss_pred HHHHH----cCCCcEEEEeCCCCCCC-------HH-------hH-HHHHHH---HHHHHhcCCcEEEEEecchh
Q 003258 424 DILEL----VSRESLVLIDEIGSGTD-------PS-------EG-VALATS---ILQYLRDRVGLAVVTTHYAD 475 (835)
Q Consensus 424 ~~~~l----a~~~~LlLLDEp~~glD-------p~-------~~-~aL~~a---ll~~l~~~~~~viitTH~~e 475 (835)
++..+ ..+|++|++|=.++-.. +. .+ ..+..+ +..++.+.++++|+|-|-..
T Consensus 100 i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 100 MVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee
Confidence 33222 35789999999887752 11 11 122222 34456678999999999865
No 230
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.30 E-value=0.0037 Score=74.56 Aligned_cols=119 Identities=16% Similarity=0.102 Sum_probs=61.1
Q ss_pred eeecCCceEEEEEcCCCCChhhHHhhH-HhhhhhcccceeecCCCCCCchHH-HHHHHHcCCc-------------cccc
Q 003258 345 IKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWF-DLILADIGDH-------------QSLE 409 (835)
Q Consensus 345 l~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~ma~~G~~vP~~~~~~i~~~-d~i~~~ig~~-------------~~~~ 409 (835)
+.+.++ ..++|+|+||+|||||++.+ +........|-. ..+.....+. .+.-..+... ..++
T Consensus 4 ~~~~~~-~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V--~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD 80 (665)
T 2dy1_A 4 EGGAMI-RTVALVGHAGSGKTTLTEALLYKTGAKERRGRV--EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD 80 (665)
T ss_dssp --CCCE-EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG--GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred CccCCC-cEEEEECCCCChHHHHHHHHHHhcCCCCcccee--cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence 445667 88999999999999999999 222211112211 0110000000 0000011110 0111
Q ss_pred C-CcccchHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhH
Q 003258 410 Q-NLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL 476 (835)
Q Consensus 410 ~-~lstfSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el 476 (835)
. +...|+..+.+ .....+.-++++| ++.|+++.....+. .+...+..+|++.|..++
T Consensus 81 TpG~~~f~~~~~~----~l~~ad~~ilVvD-~~~g~~~qt~~~~~-----~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 81 APGYGDFVGEIRG----ALEAADAALVAVS-AEAGVQVGTERAWT-----VAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp CCCSGGGHHHHHH----HHHHCSEEEEEEE-TTTCSCHHHHHHHH-----HHHHTTCCEEEEEECGGG
T ss_pred CCCccchHHHHHH----HHhhcCcEEEEEc-CCcccchhHHHHHH-----HHHHccCCEEEEecCCch
Confidence 1 11234322221 1224567889999 99999987764333 333347778888888775
No 231
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.27 E-value=0.041 Score=62.20 Aligned_cols=103 Identities=12% Similarity=0.060 Sum_probs=51.8
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhhcccc---eeecCCCCCCchHHHHHH---HHcCCcccccCCcccchHHHHHHHHH
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLMSKAG---LYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTFSGHISRIVDI 425 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~ma~~G---~~vP~~~~~~i~~~d~i~---~~ig~~~~~~~~lstfSgg~~rl~~~ 425 (835)
.+++++||+|+||||++..++.. +++.| +++.++. .+.+.++++- ...|..-........ .....+-++.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~--l~~~G~kVllv~~D~-~R~aa~eqL~~~~~~~gvpv~~~~~~~d-p~~i~~~al~ 176 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARY--FQKRGYKVGVVCSDT-WRPGAYHQLRQLLDRYHIEVFGNPQEKD-AIKLAKEGVD 176 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEECCC-SSTHHHHHHHHHHGGGTCEEECCTTCCC-HHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCC-cchhHHHHHHHHHHhcCCcEEecCCCCC-HHHHHHHHHH
Confidence 79999999999999999888422 22233 3344443 3334444432 122321110000000 1111111122
Q ss_pred HHHcCCCcEEEEeCCCCC-CCHHhHHHHHHHHHHH
Q 003258 426 LELVSRESLVLIDEIGSG-TDPSEGVALATSILQY 459 (835)
Q Consensus 426 ~~la~~~~LlLLDEp~~g-lDp~~~~aL~~all~~ 459 (835)
.+...+.+++|+|.|+.. .|...-..+.. +...
T Consensus 177 ~a~~~~~DvVIIDTaGrl~~d~~lm~el~~-i~~~ 210 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAGRHKEDKALIEEMKQ-ISNV 210 (443)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHH-HHHH
T ss_pred HHHhCCCCEEEEECCCcccchHHHHHHHHH-HHHh
Confidence 223356899999999854 45544444443 4443
No 232
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.26 E-value=0.004 Score=66.53 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
..+.|.||.|+|||++.+.++
T Consensus 37 ~~lLl~GppGtGKT~la~aiA 57 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVF 57 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 567889999999999999993
No 233
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.24 E-value=0.01 Score=64.12 Aligned_cols=43 Identities=14% Similarity=0.245 Sum_probs=28.0
Q ss_pred CCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003258 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (835)
Q Consensus 430 ~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e 475 (835)
.++.+|++|| ...+++....+|.. +++.... ...+|++|++..
T Consensus 132 ~~~~vliiDE-~~~l~~~~~~~Ll~-~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 132 PPYKIIILDE-ADSMTADAQSALRR-TMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp CSCEEEEETT-GGGSCHHHHHHHHH-HHHHTTT-TEEEEEEESCGG
T ss_pred CCceEEEEEC-CCccCHHHHHHHHH-HHHhcCC-CceEEEEeCchh
Confidence 3567999999 66778877766666 4443332 355667776643
No 234
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.20 E-value=0.00047 Score=66.91 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
..++|+||.|+||||+++.++
T Consensus 44 ~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHH
Confidence 567999999999999999983
No 235
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.16 E-value=0.00068 Score=65.73 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
..++|+||.|+||||+++.+
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~ 63 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGL 63 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHH
Confidence 56899999999999999998
No 236
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.15 E-value=0.0016 Score=72.41 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=27.6
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
++++.+++| ++++|+||||+|||||++++
T Consensus 161 ~~~~~i~~~-~~i~l~G~~GsGKSTl~~~l 189 (377)
T 1svm_A 161 CMVYNIPKK-RYWLFKGPIDSGKTTLAAAL 189 (377)
T ss_dssp HHHHCCTTC-CEEEEECSTTSSHHHHHHHH
T ss_pred hcccccCCC-CEEEEECCCCCCHHHHHHHH
Confidence 778899999 89999999999999999999
No 237
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.15 E-value=0.018 Score=61.14 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChhhHHhhHHh
Q 003258 352 RVVVITGPNTGGKTASMKTLGL 373 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGl 373 (835)
..++|+||+|+||||+.+.++-
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4789999999999999999943
No 238
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.14 E-value=0.025 Score=64.02 Aligned_cols=97 Identities=14% Similarity=0.077 Sum_probs=57.0
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhhhc--ccceeecCCCCCCchHHHHHHHH-cCCcccccCCcccchHHHH-HH
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASLMS--KAGLYLPAKNHPRLPWFDLILAD-IGDHQSLEQNLSTFSGHIS-RI 422 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma--~~G~~vP~~~~~~i~~~d~i~~~-ig~~~~~~~~lstfSgg~~-rl 422 (835)
+.+| ++++|.|++|+|||||+..++...... ...+|+..+. +.-.+..+++.. .|....-- .-..|+.++. ++
T Consensus 197 l~~G-~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~-~~~~l~~R~~~~~~~i~~~~l-~~g~l~~~~~~~~ 273 (444)
T 2q6t_A 197 LGPG-SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM-PAAQLTLRMMCSEARIDMNRV-RLGQLTDRDFSRL 273 (444)
T ss_dssp CCTT-CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS-CHHHHHHHHHHHHTTCCTTTC-CGGGCCHHHHHHH
T ss_pred cCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHHHcCCCHHHH-hCCCCCHHHHHHH
Confidence 5678 899999999999999999985544331 2223433332 222234444432 23321111 1135777766 77
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHh
Q 003258 423 VDILELVSRESLVLIDEIGSGTDPSE 448 (835)
Q Consensus 423 ~~~~~la~~~~LlLLDEp~~glDp~~ 448 (835)
..+...+...++.+.|.| ++++.+
T Consensus 274 ~~a~~~l~~~~l~i~d~~--~~s~~~ 297 (444)
T 2q6t_A 274 VDVASRLSEAPIYIDDTP--DLTLME 297 (444)
T ss_dssp HHHHHHHHTSCEEEECCT--TCBHHH
T ss_pred HHHHHHHhcCCEEEECCC--CCCHHH
Confidence 777665666778888876 344444
No 239
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.13 E-value=0.03 Score=72.63 Aligned_cols=121 Identities=18% Similarity=0.240 Sum_probs=66.6
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhhh-cccceeecCCCCCCchHHHHHHHHcCCcc-cccCCcccchHHHH-HHH
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHIS-RIV 423 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~m-a~~G~~vP~~~~~~i~~~d~i~~~ig~~~-~~~~~lstfSgg~~-rl~ 423 (835)
+.+| ++++|.||+|+|||||+..++..... ....+|+-.+.. .-.. ....+|..- .+ ...+.-+..+. ...
T Consensus 729 l~~G-~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees-~~ql---~A~~lGvd~~~L-~i~~~~~leei~~~l 802 (1706)
T 3cmw_A 729 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA-LDPI---YARKLGVDIDNL-LCSQPDTGEQALEIC 802 (1706)
T ss_dssp EETT-SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC-CCHH---HHHHTTCCGGGC-EEECCSSHHHHHHHH
T ss_pred cCCC-ceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccch-HHHH---HHHHcCCChhhe-EEecCCcHHHHHHHH
Confidence 6788 99999999999999999998443322 112345444432 1122 134455321 11 00111122222 222
Q ss_pred HHHHHcCCCcEEEEeCCCCCCC-HH------------hHHHHHH---HHHHHHhcCCcEEEEEecc
Q 003258 424 DILELVSRESLVLIDEIGSGTD-PS------------EGVALAT---SILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 424 ~~~~la~~~~LlLLDEp~~glD-p~------------~~~aL~~---all~~l~~~~~~viitTH~ 473 (835)
.-+....++++|++|++..-.. +. ....+.. .+...+.+.+++||+++|-
T Consensus 803 ~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql 868 (1706)
T 3cmw_A 803 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred HHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 1122236899999999998662 10 1122332 2333456778999999995
No 240
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.10 E-value=0.014 Score=62.49 Aligned_cols=64 Identities=9% Similarity=0.090 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHh-HHHHHHHHHHHHhc-CCc--EEEEEecchh-HHhhhccc
Q 003258 415 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSE-GVALATSILQYLRD-RVG--LAVVTTHYAD-LSCLKDKD 483 (835)
Q Consensus 415 fSgg~~rl~~~~~la~~~~LlLLDEp~~glDp~~-~~aL~~all~~l~~-~~~--~viitTH~~e-l~~~~~~~ 483 (835)
|+.+++.+...+.....|.++++ |.+|... ...+.. .++.+.+ .+. .+.+++|+.+ +..+.+..
T Consensus 101 ~~~~~~~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~-~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDEMVLNKLREGKAPVILAV----NKVDNVQEKADLLP-HLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHHHHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHH-HHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEE----ECcccCccHHHHHH-HHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 88887766555444577888888 8899876 555555 4444444 343 5566667643 65555544
No 241
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.07 E-value=0.0052 Score=63.28 Aligned_cols=124 Identities=19% Similarity=0.176 Sum_probs=65.2
Q ss_pred CCceEEEEEcCCCCChhhHHhhHHhhhhh-c-ccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHH
Q 003258 349 CETRVVVITGPNTGGKTASMKTLGLASLM-S-KAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDIL 426 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~iGli~~m-a-~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~ 426 (835)
+| .+++|+||-|+||||++-.+..-..- . +..++.|... .. + ..++..++|..-... .+.... .=+..+.
T Consensus 11 ~G-~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d-~r-~-~~~i~srlG~~~~~~-~~~~~~---~i~~~i~ 82 (223)
T 2b8t_A 11 IG-WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID-TR-S-IRNIQSRTGTSLPSV-EVESAP---EILNYIM 82 (223)
T ss_dssp CC-EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-GG-G-CSSCCCCCCCSSCCE-EESSTH---HHHHHHH
T ss_pred Cc-EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC-ch-H-HHHHHHhcCCCcccc-ccCCHH---HHHHHHH
Confidence 46 89999999999999987665221111 1 1223334432 11 1 123444455431111 111111 1111222
Q ss_pred HH--cCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecch-----------hHHhhhcccccc
Q 003258 427 EL--VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-----------DLSCLKDKDTRF 486 (835)
Q Consensus 427 ~l--a~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~-----------el~~~~~~~~~~ 486 (835)
.. ..++++|++||.-. +++. +.+ .+..+.+.+..||++-|+. +|..+||.+..+
T Consensus 83 ~~~~~~~~dvViIDEaQ~-l~~~----~ve-~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el 149 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQF-FDDR----ICE-VANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL 149 (223)
T ss_dssp STTSCTTCCEEEECSGGG-SCTH----HHH-HHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred HHhhCCCCCEEEEecCcc-CcHH----HHH-HHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeec
Confidence 11 23589999999964 5543 222 3344555689999999932 345577766554
No 242
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.01 E-value=0.036 Score=57.10 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
..+.|+||.|+||||+.+.++
T Consensus 40 ~~vll~G~~GtGKT~la~~la 60 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVA 60 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 568899999999999999994
No 243
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.01 E-value=0.027 Score=57.92 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=21.5
Q ss_pred cCCceEEEEEcCCCCChhhHHhhH
Q 003258 348 ECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
..| .+++|.||+||||||+++.+
T Consensus 24 ~~g-~~i~i~G~~GsGKsT~~~~l 46 (229)
T 4eaq_A 24 AMS-AFITFEGPEGSGKTTVINEV 46 (229)
T ss_dssp CCC-EEEEEECCTTSCHHHHHHHH
T ss_pred CCC-eEEEEEcCCCCCHHHHHHHH
Confidence 377 89999999999999999999
No 244
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.99 E-value=0.00092 Score=66.00 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
++++|+||||||||||++.|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L 22 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRM 22 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 245
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.94 E-value=0.023 Score=53.65 Aligned_cols=88 Identities=8% Similarity=0.124 Sum_probs=49.6
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHHHHcCC
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR 431 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~~la~~ 431 (835)
.-+.|+||.|+|||++.+.++-.. +-++.... .. +.... .......+ +
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~-----~~~~~~~~-~~-----------------------~~~~~--~~~~~~~a-~ 75 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNG-----TPWVSPAR-VE-----------------------YLIDM--PMELLQKA-E 75 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTT-----SCEECCSS-TT-----------------------HHHHC--HHHHHHHT-T
T ss_pred CcEEEECCCCccHHHHHHHHHHhC-----CCeEEech-hh-----------------------CChHh--hhhHHHhC-C
Confidence 457899999999999999992111 01111111 11 11000 11112223 3
Q ss_pred CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 003258 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 432 ~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~ 473 (835)
+.+|+|||+.. +++.....|.. +++.....+..+|++|+.
T Consensus 76 ~~~l~lDei~~-l~~~~q~~Ll~-~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 76 GGVLYVGDIAQ-YSRNIQTGITF-IIGKAERCRVRVIASCSY 115 (143)
T ss_dssp TSEEEEEECTT-CCHHHHHHHHH-HHHHHTTTTCEEEEEEEE
T ss_pred CCeEEEeChHH-CCHHHHHHHHH-HHHhCCCCCEEEEEecCC
Confidence 57999999874 56666666766 444333345677777765
No 246
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.93 E-value=0.003 Score=63.25 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+|||||||||+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 247
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.92 E-value=0.0032 Score=63.11 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.5
Q ss_pred eecCCceEEEEEcCCCCChhhHHhhH
Q 003258 346 KVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 346 ~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.+.++ .+++|+||+||||||+++.+
T Consensus 17 ~~~~~-~~i~i~G~~GsGKSTl~~~L 41 (207)
T 2qt1_A 17 RGSKT-FIIGISGVTNSGKTTLAKNL 41 (207)
T ss_dssp CSCCC-EEEEEEESTTSSHHHHHHHH
T ss_pred cCCCC-eEEEEECCCCCCHHHHHHHH
Confidence 45567 89999999999999999999
No 248
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.90 E-value=0.041 Score=71.41 Aligned_cols=122 Identities=18% Similarity=0.225 Sum_probs=70.4
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhh-hcccceeecCCCCCCchHHHHHHHHcCCcc-cccCCcccchHHHH-HHH
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHIS-RIV 423 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~-ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~-~~~~~lstfSgg~~-rl~ 423 (835)
+++| +++.|.||.|+|||||.-.+..... .....+|+-.+.... .. ....+|..- .+. ....-+.++. .+.
T Consensus 380 l~~G-~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~-~~---~a~~lGvd~~~L~-i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 380 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD-PI---YARKLGVDIDNLL-CSQPDTGEQALEIC 453 (1706)
T ss_dssp EETT-SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC-HH---HHHHTTCCGGGCE-EECCSSHHHHHHHH
T ss_pred cCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchH-HH---HHHHcCCCHHHeE-EcCCCCHHHHHHHH
Confidence 5688 9999999999999999888833322 233445666655322 11 245556431 111 0111123332 333
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHH------------hHH----HHHHHHHHHHhcCCcEEEEEecch
Q 003258 424 DILELVSRESLVLIDEIGSGTDPS------------EGV----ALATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 424 ~~~~la~~~~LlLLDEp~~glDp~------------~~~----aL~~all~~l~~~~~~viitTH~~ 474 (835)
..+....++++|++|.++.-.... ... .+...+...+.+.++++|+++|-.
T Consensus 454 ~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~ 520 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 520 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEE
T ss_pred HHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 223335689999999998876411 111 222324444467799999999863
No 249
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.85 E-value=0.036 Score=60.70 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
..++|+||.|+||||+.+.++
T Consensus 118 ~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999993
No 250
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.84 E-value=0.0034 Score=62.65 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
+++|+|||||||||+.+.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L 21 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMF 21 (204)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 6899999999999999999
No 251
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.81 E-value=0.0039 Score=61.57 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=23.1
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
|+|+...++ ..++|+|+.||||||+.+.+
T Consensus 2 ~~~~~~~~~-~~I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 2 PGSMEQPKG-INILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp ----CCCSS-CEEEEECSTTSSHHHHHHHH
T ss_pred CcCcCCCCC-CEEEEECCCCCCHHHHHHHH
Confidence 456777777 88999999999999999998
No 252
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.79 E-value=0.047 Score=71.75 Aligned_cols=120 Identities=20% Similarity=0.276 Sum_probs=68.0
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhhh-cccceeecCCCCCCchHHHHHHHHcCCc-ccccCCcccc-hHHHH-HH
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDH-QSLEQNLSTF-SGHIS-RI 422 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~m-a~~G~~vP~~~~~~i~~~d~i~~~ig~~-~~~~~~lstf-Sgg~~-rl 422 (835)
+++| +.+.|.||.|+|||||...++.-... +..-.|+.+++ ..-+.+ ...+|.. +.+ .++.- ++++. ++
T Consensus 1424 i~~g-~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~-~~~~l~---a~~~G~dl~~l--~v~~~~~~E~~l~~ 1496 (2050)
T 3cmu_A 1424 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH-ALDPIY---ARKLGVDIDNL--LCSQPDTGEQALEI 1496 (2050)
T ss_dssp EETT-SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS-CCCHHH---HHHTTCCTTTC--EEECCSSHHHHHHH
T ss_pred ccCC-eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc-ccCHHH---HHHcCCCchhc--eeecCChHHHHHHH
Confidence 6688 89999999999999999998554332 22334666555 222222 4455532 111 11111 22222 33
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHh------------H----HHHHHHHHHHHhcCCcEEEEEecc
Q 003258 423 VDILELVSRESLVLIDEIGSGTDPSE------------G----VALATSILQYLRDRVGLAVVTTHY 473 (835)
Q Consensus 423 ~~~~~la~~~~LlLLDEp~~glDp~~------------~----~aL~~all~~l~~~~~~viitTH~ 473 (835)
..-+.-...|++|++||..+-+-..+ + ..+...+..++.++++++|+|-.-
T Consensus 1497 ~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~ 1563 (2050)
T 3cmu_A 1497 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1563 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECE
T ss_pred HHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEccc
Confidence 32233347899999999864443211 2 223444677777777777766543
No 253
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.77 E-value=0.051 Score=53.52 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhhHHhhHH
Q 003258 353 VVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~iG 372 (835)
.++|+||.|+||||+++.+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999983
No 254
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.74 E-value=0.0024 Score=73.76 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=26.7
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhHHhh
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLA 374 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli 374 (835)
.++|.+.+| +.+|+|+||+||||+|.+|.++
T Consensus 53 ~~~l~f~~g--~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 53 QLELELGGG--FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp CEEEECCCS--EEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEecCCC--eEEEEcCCCCCHHHHHHHHHHH
Confidence 567777777 8999999999999999999555
No 255
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.70 E-value=0.045 Score=55.68 Aligned_cols=125 Identities=14% Similarity=0.090 Sum_probs=66.9
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhhh--cccceeecCCCCCCchHHHHHHHHcCCc----------cccc-----
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASLM--SKAGLYLPAKNHPRLPWFDLILADIGDH----------QSLE----- 409 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~m--a~~G~~vP~~~~~~i~~~d~i~~~ig~~----------~~~~----- 409 (835)
+++| +++.|.|+.|+|||||+-.+...... ...++|+-.+.+ .-.+..+ +..++.. ...+
T Consensus 27 l~~G-~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~ 103 (251)
T 2zts_A 27 FPEG-TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRRE-MASFGWDFEKYEKEGKIAIVDGVSSV 103 (251)
T ss_dssp EETT-CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHH-HHTTTCCHHHHHHTTSEEEEC-----
T ss_pred CCCC-eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC-HHHHHHH-HHHcCCChHHHHhcCcchhhhhHHHH
Confidence 5678 89999999999999998887433221 223444443321 1111111 1111110 0000
Q ss_pred ---------CCcccchHHH-HHHHHHHHHcCCCcEEEEeCCCC----CCCHHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 003258 410 ---------QNLSTFSGHI-SRIVDILELVSRESLVLIDEIGS----GTDPSEGVALATSILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 410 ---------~~lstfSgg~-~rl~~~~~la~~~~LlLLDEp~~----glDp~~~~aL~~all~~l~~~~~~viitTH~~ 474 (835)
......+... ...........++.++++|-.+. .-|+.....+...+.....+.++++++++|..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 104 VGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp --------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hhcccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 0001111111 11111122346788999997642 23555566677767777778899999999874
No 256
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.66 E-value=0.0044 Score=62.72 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+||+||||||+++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 257
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.63 E-value=0.039 Score=56.91 Aligned_cols=126 Identities=14% Similarity=0.083 Sum_probs=64.1
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhHHhhhhhc--ccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHH
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMS--KAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 419 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma--~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~ 419 (835)
|....-..| .+.+++||=|+||||.|-....-...+ +.-++.|... .+.+ ..+..++|..-... .+....-
T Consensus 11 p~~~~~~~g-~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D-~Ryg--~~i~sr~G~~~~a~-~i~~~~d-- 83 (234)
T 2orv_A 11 PGSPSKTRG-QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD-TRYS--SSFCTHDRNTMEAL-PACLLRD-- 83 (234)
T ss_dssp -------CC-EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC-CCC-------------CEEE-EESSGGG--
T ss_pred CCCCCCCce-EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC-ccch--HHHHhhcCCeeEEE-ecCCHHH--
Confidence 333344467 899999999999998654442222211 1223456654 3444 56777777642211 1222111
Q ss_pred HHHHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-----------HHhhhcccccc
Q 003258 420 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-----------LSCLKDKDTRF 486 (835)
Q Consensus 420 ~rl~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-----------l~~~~~~~~~~ 486 (835)
+...+.+.++|++||.---++ +.. +++.+.+.|..||++-++.+ |..+||.+..+
T Consensus 84 -----i~~~~~~~dvViIDEaQF~~~------v~e-l~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtel 149 (234)
T 2orv_A 84 -----VAQEALGVAVIGIDEGQFFPD------IVE-FCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKL 149 (234)
T ss_dssp -----GHHHHTTCSEEEESSGGGCTT------HHH-HHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEEC
T ss_pred -----HHHHhccCCEEEEEchhhhhh------HHH-HHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEee
Confidence 222336789999999877654 333 55555667899999999932 44566665554
No 258
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.62 E-value=0.097 Score=59.22 Aligned_cols=125 Identities=9% Similarity=0.015 Sum_probs=66.3
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhhh-cccceeecCCCCCCchHHHHHHHHc-C--------------Cccc---
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADI-G--------------DHQS--- 407 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~m-a~~G~~vP~~~~~~i~~~d~i~~~i-g--------------~~~~--- 407 (835)
+.+| ++++|.|+.|+|||||+-.++..... ....+|+..+. +.-.+..+++... | ..+.
T Consensus 194 l~~G-~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm-s~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~~~l 271 (444)
T 3bgw_A 194 YKRR-NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKL 271 (444)
T ss_dssp BCSS-CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS-CTTHHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHHH
T ss_pred CCCC-cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC-CHHHHHHHHHHHHcCCCHHHHhcccCCCCHHHHHHH
Confidence 5788 99999999999999999888544332 22233443332 2222333333211 1 1110
Q ss_pred ------c-cC-----CcccchHHHH--HHHHHHHHcCCCc--EEEEeCCCCCCCH-------HhHHHHHHHHHHHHhcCC
Q 003258 408 ------L-EQ-----NLSTFSGHIS--RIVDILELVSRES--LVLIDEIGSGTDP-------SEGVALATSILQYLRDRV 464 (835)
Q Consensus 408 ------~-~~-----~lstfSgg~~--rl~~~~~la~~~~--LlLLDEp~~glDp-------~~~~aL~~all~~l~~~~ 464 (835)
+ .. ....++-..- ++..+. .-.++. +|++|=...-..+ .+-..+...+.....+.+
T Consensus 272 ~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~-~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~ 350 (444)
T 3bgw_A 272 SMAIGEISNSNINIFDKAGQSVNYIWSKTRQTK-RKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELD 350 (444)
T ss_dssp HHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHH-HHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 0 00 1122343332 222222 224788 9999987543211 122344454555555679
Q ss_pred cEEEEEecch
Q 003258 465 GLAVVTTHYA 474 (835)
Q Consensus 465 ~~viitTH~~ 474 (835)
++||+++|-.
T Consensus 351 v~vi~lsql~ 360 (444)
T 3bgw_A 351 VVVIALSQLS 360 (444)
T ss_dssp CEEEEEEECC
T ss_pred CeEEEEecCC
Confidence 9999999963
No 259
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.60 E-value=0.022 Score=53.81 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
.-+.|+||.|+|||++.+.+.
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999993
No 260
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.57 E-value=0.017 Score=61.19 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
..++|+||.|+|||++.+.++
T Consensus 68 ~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 568999999999999999884
No 261
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.56 E-value=0.0026 Score=74.12 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=23.2
Q ss_pred eecCCceEEEEEcCCCCChhhHHhhH
Q 003258 346 KVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 346 ~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.+.+| .+++|+|+|||||||++|+|
T Consensus 365 ~~~~G-~iI~LiG~sGSGKSTLar~L 389 (552)
T 3cr8_A 365 RERQG-FTVFFTGLSGAGKSTLARAL 389 (552)
T ss_dssp GGGSC-EEEEEEESSCHHHHHHHHHH
T ss_pred ccccc-eEEEEECCCCChHHHHHHHH
Confidence 46788 89999999999999999999
No 262
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.52 E-value=0.0052 Score=60.93 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+||||+|||||++.+
T Consensus 7 kv~lvG~~g~GKSTLl~~l 25 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRF 25 (199)
T ss_dssp EEEEESSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999999
No 263
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.52 E-value=0.0063 Score=59.49 Aligned_cols=22 Identities=32% Similarity=0.293 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCChhhHHhhH
Q 003258 349 CETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+| .+++|+|++||||||+++.+
T Consensus 4 ~g-~~i~l~G~~GsGKST~~~~L 25 (179)
T 2pez_A 4 RG-CTVWLTGLSGAGKTTVSMAL 25 (179)
T ss_dssp CC-EEEEEECCTTSSHHHHHHHH
T ss_pred CC-cEEEEECCCCCCHHHHHHHH
Confidence 46 78999999999999999999
No 264
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.50 E-value=0.053 Score=62.22 Aligned_cols=127 Identities=10% Similarity=-0.016 Sum_probs=66.0
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhhh--cccceeecCCCCCCchHHHHHHHH-cCCc--c---------------
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASLM--SKAGLYLPAKNHPRLPWFDLILAD-IGDH--Q--------------- 406 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~m--a~~G~~vP~~~~~~i~~~d~i~~~-ig~~--~--------------- 406 (835)
+.+| ++++|.|+.|+|||||+-.+...... ....+|+-.+.+ .-.+..+++.. .|.. .
T Consensus 239 l~~G-~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~ 316 (503)
T 1q57_A 239 ARGG-EVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIGLHNRVRLRQSDSLKREIIENGKFD 316 (503)
T ss_dssp CCTT-CEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHH
T ss_pred cCCC-eEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHHHHHHcCCChhhccccccCCCCHHHHH
Confidence 6678 89999999999999999888544332 223344444331 11222333221 1111 0
Q ss_pred ------------cccCCcccchHHHH-HHHHHHHHcCCCcEEEEeCCCCCCC-------HHhHHHHHHHHHHHHhcCCcE
Q 003258 407 ------------SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD-------PSEGVALATSILQYLRDRVGL 466 (835)
Q Consensus 407 ------------~~~~~lstfSgg~~-rl~~~~~la~~~~LlLLDEp~~glD-------p~~~~aL~~all~~l~~~~~~ 466 (835)
.+....+.++..+- ....-+..-.++.+|++|=...-.. ......+...+.....+.+++
T Consensus 317 ~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~ 396 (503)
T 1q57_A 317 QWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVV 396 (503)
T ss_dssp HHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCe
Confidence 00111112333222 1111122335799999997654221 112233455455555667999
Q ss_pred EEEEecchh
Q 003258 467 AVVTTHYAD 475 (835)
Q Consensus 467 viitTH~~e 475 (835)
||+++|-..
T Consensus 397 vi~~~q~~r 405 (503)
T 1q57_A 397 LVVICHLKN 405 (503)
T ss_dssp EEEEEECCC
T ss_pred EEEEEcCCc
Confidence 999999753
No 265
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.50 E-value=0.07 Score=57.61 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
+.+.|.||.|+|||++.+.++
T Consensus 46 ~~iLL~GppGtGKT~la~ala 66 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVA 66 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 568999999999999999994
No 266
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.055 Score=61.05 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=56.1
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHH-HH--HHHHHHHH
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH-IS--RIVDILEL 428 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg-~~--rl~~~~~l 428 (835)
+-+.+.||.|+|||++.|+|+-- +|..... +. .....+.+.|+ ++ +-.+..+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e-----~~~~~~~---------------v~----~s~l~sk~~Gese~~ir~~F~~A~ 271 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT-----IGANFIF---------------SP----ASGIVDKYIGESARIIREMFAYAK 271 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH-----HTCEEEE---------------EE----GGGTCCSSSSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH-----hCCCEEE---------------Ee----hhhhccccchHHHHHHHHHHHHHH
Confidence 56899999999999999999221 2211100 00 01112222232 23 33444556
Q ss_pred cCCCcEEEEeCCCC--------C--CCHHhHHHHHHHHHHHHhc----CCcEEEEEecchh
Q 003258 429 VSRESLVLIDEIGS--------G--TDPSEGVALATSILQYLRD----RVGLAVVTTHYAD 475 (835)
Q Consensus 429 a~~~~LlLLDEp~~--------g--lDp~~~~aL~~all~~l~~----~~~~viitTH~~e 475 (835)
...|++|++||.-+ + .|.. .......++..+.. .+..||++|++.+
T Consensus 272 ~~~P~IifiDEiDai~~~R~~~~~~~~~~-~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~ 331 (437)
T 4b4t_L 272 EHEPCIIFMDEVDAIGGRRFSEGTSADRE-IQRTLMELLTQMDGFDNLGQTKIIMATNRPD 331 (437)
T ss_dssp HSCSEEEEEECCCSSSCCCSSSCCSSTTH-HHHHHHHHHHHHHSSSCTTSSEEEEEESSTT
T ss_pred hcCCceeeeecccccccccccCCCCcchH-HHHHHHHHHHHhhcccCCCCeEEEEecCCch
Confidence 68899999999842 1 1222 22333346666542 2457899998865
No 267
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.078 Score=59.70 Aligned_cols=99 Identities=21% Similarity=0.283 Sum_probs=55.2
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHH-HHHHH--HHHHH
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH-ISRIV--DILEL 428 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg-~~rl~--~~~~l 428 (835)
+-+.+.||.|+|||++.|+++-- +|..... +...+ ..+.+.|+ ++++. +..+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~-----~~~~~~~---------------v~~~~----l~~~~~Ge~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS-----TKAAFIR---------------VNGSE----FVHKYLGEGPRMVRDVFRLAR 262 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH-----HTCEEEE---------------EEGGG----TCCSSCSHHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-----hCCCeEE---------------Eecch----hhccccchhHHHHHHHHHHHH
Confidence 55899999999999999999321 1211100 00011 12222222 33333 33455
Q ss_pred cCCCcEEEEeCCC----------CCCCHHhHHHHHHHHHHHHh----cCCcEEEEEecchh
Q 003258 429 VSRESLVLIDEIG----------SGTDPSEGVALATSILQYLR----DRVGLAVVTTHYAD 475 (835)
Q Consensus 429 a~~~~LlLLDEp~----------~glDp~~~~aL~~all~~l~----~~~~~viitTH~~e 475 (835)
...|+++++||.- .+-|......+. .++..+. ..+..||++|++.+
T Consensus 263 ~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~-~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 263 ENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILI-ELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp HTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHH-HHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred HcCCCeeechhhhhhhccccCCCCCCChHHHHHHH-HHHHHhhCCCCCCCEEEEEecCChh
Confidence 6789999999982 222333333333 3665554 23457889998865
No 268
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.37 E-value=0.027 Score=61.96 Aligned_cols=87 Identities=22% Similarity=0.133 Sum_probs=46.9
Q ss_pred eEEEE--EcCCCCChhhHHhhHHhhhhh-------cccceeecCCC-CCCchHHHHHHHHcCCcccccCCcccchHHH--
Q 003258 352 RVVVI--TGPNTGGKTASMKTLGLASLM-------SKAGLYLPAKN-HPRLPWFDLILADIGDHQSLEQNLSTFSGHI-- 419 (835)
Q Consensus 352 ~~~~I--~GpNGsGKSTlLK~iGli~~m-------a~~G~~vP~~~-~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~-- 419 (835)
..++| +||.|+|||||++.+.-...- ....+++.+.. .....++..++..+|.... ....+...
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~ 126 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ----VRGAPALDIL 126 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCC----CTTCCHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCC----CCCCCHHHHH
Confidence 67777 999999999999998321110 01123444322 1223456677777765311 01112211
Q ss_pred HHHHHHHHHcCCCcEEEEeCCCC
Q 003258 420 SRIVDILELVSRESLVLIDEIGS 442 (835)
Q Consensus 420 ~rl~~~~~la~~~~LlLLDEp~~ 442 (835)
..+...+.....+-+|+|||.-.
T Consensus 127 ~~l~~~l~~~~~~~llvlDe~~~ 149 (412)
T 1w5s_A 127 KALVDNLYVENHYLLVILDEFQS 149 (412)
T ss_dssp HHHHHHHHHHTCEEEEEEESTHH
T ss_pred HHHHHHHHhcCCeEEEEEeCHHH
Confidence 13333333335678999999844
No 269
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.27 E-value=0.091 Score=69.09 Aligned_cols=122 Identities=18% Similarity=0.243 Sum_probs=67.8
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhHHhhhhh-cccceeecCCCCCCchHHHHHHHHcCCcc-cccCCcccchHHHH-HHH
Q 003258 347 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHIS-RIV 423 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~m-a~~G~~vP~~~~~~i~~~d~i~~~ig~~~-~~~~~lstfSgg~~-rl~ 423 (835)
+.+| +++.|.||.|+|||||+-.+...... ....+|+-.+.... .. ....+|..- .+. -....+.++. ...
T Consensus 380 l~~G-~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~-~~---~a~~lGvd~~~L~-I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 380 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD-PI---YARKLGVDIDNLL-CSQPDTGEQALEIC 453 (2050)
T ss_dssp EETT-SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC-HH---HHHHTTCCTTTCE-EECCSSHHHHHHHH
T ss_pred ccCC-cEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHH-HH---HHHHcCCCHHHeE-EeCCCCHHHHHHHH
Confidence 5688 99999999999999999888433221 12234555444222 11 244555431 110 0111233332 222
Q ss_pred HHHHHcCCCcEEEEeCCCCCCC-HH------------hHHHHHH---HHHHHHhcCCcEEEEEecch
Q 003258 424 DILELVSRESLVLIDEIGSGTD-PS------------EGVALAT---SILQYLRDRVGLAVVTTHYA 474 (835)
Q Consensus 424 ~~~~la~~~~LlLLDEp~~glD-p~------------~~~aL~~---all~~l~~~~~~viitTH~~ 474 (835)
..+....++++|++|....-.. +. ....+.. .+...+.+.+++||+++|-.
T Consensus 454 ~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~ 520 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 520 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred HHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 2222346899999999987663 11 1112332 23333467899999999863
No 270
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.23 E-value=0.0067 Score=60.78 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.6
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhH
Q 003258 347 VECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+.+| .+++|+||+||||||+.+.+
T Consensus 9 ~~~~-~~i~l~G~sGsGKsTl~~~L 32 (204)
T 2qor_A 9 MARI-PPLVVCGPSGVGKGTLIKKV 32 (204)
T ss_dssp CCCC-CCEEEECCTTSCHHHHHHHH
T ss_pred cccC-CEEEEECCCCCCHHHHHHHH
Confidence 3567 88999999999999999998
No 271
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.21 E-value=0.034 Score=60.93 Aligned_cols=26 Identities=12% Similarity=0.373 Sum_probs=20.5
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++.++ .++|+|++|+||||||+.+
T Consensus 29 ~i~~~lp----~I~vvG~~~sGKSSLln~l 54 (360)
T 3t34_A 29 TLWDSLP----AIAVVGGQSSGKSSVLESI 54 (360)
T ss_dssp ---CCCC----EEEEECBTTSSHHHHHHHH
T ss_pred cccccCC----EEEEECCCCCcHHHHHHHH
Confidence 4555553 6899999999999999999
No 272
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.11 E-value=0.064 Score=57.64 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
..++|+||.|+||||+++.+
T Consensus 56 ~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 35899999999999999999
No 273
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.02 E-value=0.0034 Score=76.56 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=23.5
Q ss_pred ceeecCCceEEEEEcCCCCChhhHHhhHH
Q 003258 344 DIKVECETRVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 344 sl~l~~g~~~~~I~GpNGsGKSTlLK~iG 372 (835)
++.+.++ ..++|.||||+|||||.|+++
T Consensus 505 ~~~~~~~-~~vLL~GppGtGKT~Lakala 532 (806)
T 1ypw_A 505 KFGMTPS-KGVLFYGPPGCGKTLLAKAIA 532 (806)
T ss_dssp CCCCCCC-CCCCCBCCTTSSHHHHHHHHH
T ss_pred hcCCCCC-ceeEEECCCCCCHHHHHHHHH
Confidence 4455666 678999999999999999993
No 274
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.90 E-value=0.009 Score=59.54 Aligned_cols=20 Identities=20% Similarity=0.410 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+||+||||||+.+.|
T Consensus 19 ~~I~l~G~~GsGKSTla~~L 38 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAI 38 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999999
No 275
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.90 E-value=0.0084 Score=66.47 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=37.6
Q ss_pred CeEEEeeeeeecCCcee-----------------ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 325 SEMTVGSLSKGISDFPV-----------------PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v-----------------~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+.+.++||++.|..... ++.+.+.+| +.++|+||+|+|||||++.|
T Consensus 132 ~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rG-Qr~~IvG~sG~GKTtLl~~I 194 (422)
T 3ice_A 132 NKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRG-QRGLIVAPPKAGKTMLLQNI 194 (422)
T ss_dssp TSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTT-CEEEEECCSSSSHHHHHHHH
T ss_pred CCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCC-cEEEEecCCCCChhHHHHHH
Confidence 34567888888865322 467888999 89999999999999999998
No 276
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.85 E-value=0.11 Score=58.09 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=55.4
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchH-HHHHHH--HHHHH
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG-HISRIV--DILEL 428 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSg-g~~rl~--~~~~l 428 (835)
+-+.+.||.|+|||.+.|+++-- +|..... +. ...-.+.+.| +++++. +..+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e-----~~~~f~~---------------v~----~s~l~sk~vGese~~vr~lF~~Ar 238 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH-----TDCKFIR---------------VS----GAELVQKYIGEGSRMVRELFVMAR 238 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH-----HTCEEEE---------------EE----GGGGSCSSTTHHHHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh-----hCCCceE---------------EE----hHHhhccccchHHHHHHHHHHHHH
Confidence 44899999999999999999221 1211100 00 0111222333 233333 33555
Q ss_pred cCCCcEEEEeCCCCCC-------CH--HhHHHHHHHHHHHHhc----CCcEEEEEecchh
Q 003258 429 VSRESLVLIDEIGSGT-------DP--SEGVALATSILQYLRD----RVGLAVVTTHYAD 475 (835)
Q Consensus 429 a~~~~LlLLDEp~~gl-------Dp--~~~~aL~~all~~l~~----~~~~viitTH~~e 475 (835)
...|++|++||.-+-. +. .....+...++..+.. .+..||.+|+..+
T Consensus 239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd 298 (405)
T 4b4t_J 239 EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLD 298 (405)
T ss_dssp HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSS
T ss_pred HhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChh
Confidence 6789999999974321 11 1122233346665542 2457889999876
No 277
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.78 E-value=0.088 Score=54.87 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChhhHHhhHHh
Q 003258 352 RVVVITGPNTGGKTASMKTLGL 373 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGl 373 (835)
..+.|+||.|+||||+.+.++-
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 6789999999999999999943
No 278
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.78 E-value=0.04 Score=63.52 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
..++|+||.|+||||+++.++
T Consensus 78 ~~lLL~GppGtGKTtla~~la 98 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVA 98 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999994
No 279
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.75 E-value=0.077 Score=59.83 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
+-+.+.||.|+|||++.|++
T Consensus 216 rGvLLyGPPGTGKTllAkAi 235 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARAC 235 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHH
Confidence 56899999999999999999
No 280
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.69 E-value=0.0057 Score=67.45 Aligned_cols=40 Identities=15% Similarity=0.308 Sum_probs=28.4
Q ss_pred CeEEEeeeeeecCCcee--ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 325 ~~l~~~~ls~~y~~~~v--~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+.+.+.|++..|+++.+ +++|. ++|+|+||+|||||+++|
T Consensus 16 ~~v~~~~l~~~~~~k~~~~~~~~~-------I~vvG~~g~GKSTLln~L 57 (361)
T 2qag_A 16 GYVGFANLPNQVHRKSVKKGFEFT-------LMVVGESGLGKSTLINSL 57 (361)
T ss_dssp -----CCHHHHHHTHHHHHCCEEC-------EEECCCTTSCHHHHHHHH
T ss_pred ceEEeccchHHhCCeeecCCCCEE-------EEEEcCCCCCHHHHHHHH
Confidence 45778888888877655 44443 489999999999999997
No 281
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.65 E-value=0.099 Score=56.65 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
..++|+||.|+||||+++.+
T Consensus 39 ~~~ll~G~~G~GKT~la~~l 58 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLL 58 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 282
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.64 E-value=0.025 Score=64.85 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.-+.|+||.|+|||++.+.+
T Consensus 239 ~~vLL~GppGtGKT~lArai 258 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAV 258 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHH
Confidence 56899999999999999999
No 283
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.63 E-value=0.081 Score=57.91 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
.-++|+||.|+|||++.+.++
T Consensus 85 ~~iLL~GppGtGKT~la~ala 105 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVA 105 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHH
Confidence 347899999999999999993
No 284
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.54 E-value=0.071 Score=56.72 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
..++|+||.|+||||+++.++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~ 59 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIA 59 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999994
No 285
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.52 E-value=0.016 Score=56.69 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.1
Q ss_pred CCceEEEEEcCCCCChhhHHhhH
Q 003258 349 CETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.| .+++|+||+||||||+.+.+
T Consensus 3 ~g-~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 3 VG-QAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp CE-EEEEEECCTTSCHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 45 68999999999999999999
No 286
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.40 E-value=0.013 Score=64.30 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+|++|+||||||+.+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L 94 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYF 94 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 78999999999999999999
No 287
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.35 E-value=0.02 Score=56.13 Aligned_cols=23 Identities=39% Similarity=0.351 Sum_probs=21.1
Q ss_pred cCCceEEEEEcCCCCChhhHHhhH
Q 003258 348 ECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.+| .+++|+|++||||||+.+.+
T Consensus 11 ~~~-~~i~l~G~~GsGKsT~~~~L 33 (186)
T 2yvu_A 11 EKG-IVVWLTGLPGSGKTTIATRL 33 (186)
T ss_dssp SCC-EEEEEECCTTSSHHHHHHHH
T ss_pred CCC-cEEEEEcCCCCCHHHHHHHH
Confidence 356 89999999999999999999
No 288
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.30 E-value=0.027 Score=61.38 Aligned_cols=21 Identities=24% Similarity=0.069 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
..+.|+||.|+||||+++.+.
T Consensus 46 ~~vll~G~~G~GKT~la~~l~ 66 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIF 66 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999993
No 289
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.29 E-value=0.019 Score=55.06 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+||.||||||+.+.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L 21 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKL 21 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999998
No 290
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.29 E-value=0.19 Score=56.38 Aligned_cols=98 Identities=18% Similarity=0.184 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhhccccee-ecCCCCCCchHHHHHHHHcCCcccccCCcccchH-HHH--HHHHHHH
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLY-LPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG-HIS--RIVDILE 427 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~-vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSg-g~~--rl~~~~~ 427 (835)
+-+.+.||.|+|||.+.|+++-- +|.. +...+ .+. .+.+.| .++ |..+..+
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e-----~~~~fi~v~~----------------s~l----~sk~vGesek~ir~lF~~A 271 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ-----TSATFLRIVG----------------SEL----IQKYLGDGPRLCRQIFKVA 271 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH-----HTCEEEEEES----------------GGG----CCSSSSHHHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHH-----hCCCEEEEEH----------------HHh----hhccCchHHHHHHHHHHHH
Confidence 55899999999999999999221 1211 11111 111 122222 233 3334455
Q ss_pred HcCCCcEEEEeCCCCC----------CCHHhHHHHHHHHHHHHhc----CCcEEEEEecchh
Q 003258 428 LVSRESLVLIDEIGSG----------TDPSEGVALATSILQYLRD----RVGLAVVTTHYAD 475 (835)
Q Consensus 428 la~~~~LlLLDEp~~g----------lDp~~~~aL~~all~~l~~----~~~~viitTH~~e 475 (835)
....|++|++||.-+- -+......+. .++..+.. .+..||++|++.+
T Consensus 272 r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~-~LL~~lDg~~~~~~ViVIaATNrpd 332 (437)
T 4b4t_I 272 GENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTML-ELLNQLDGFDDRGDVKVIMATNKIE 332 (437)
T ss_dssp HHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHH-HHHHHHHHCCCSSSEEEEEEESCST
T ss_pred HhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHH-HHHHHhhCcCCCCCEEEEEeCCChh
Confidence 5678999999997422 1222222333 35555432 2457888998866
No 291
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.22 E-value=0.11 Score=55.84 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
..+.|.||.|+|||++.+.++
T Consensus 52 ~~vLl~GppGtGKT~la~aia 72 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVA 72 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 568999999999999999993
No 292
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.20 E-value=0.021 Score=57.45 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.9
Q ss_pred eeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 345 IKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 345 l~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+.+.+| .+++|+|++||||||+.+.+
T Consensus 20 ~~~~~~-~~i~~~G~~GsGKsT~~~~l 45 (211)
T 1m7g_A 20 LRNQRG-LTIWLTGLSASGKSTLAVEL 45 (211)
T ss_dssp HHTSSC-EEEEEECSTTSSHHHHHHHH
T ss_pred ccCCCC-CEEEEECCCCCCHHHHHHHH
Confidence 345677 89999999999999999999
No 293
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.19 E-value=0.45 Score=57.35 Aligned_cols=23 Identities=30% Similarity=0.258 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChhhHHhhHHhh
Q 003258 352 RVVVITGPNTGGKTASMKTLGLA 374 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli 374 (835)
.-++|+||.|+||||+.+.++-.
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999433
No 294
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.12 E-value=0.081 Score=59.79 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
..++|.||.|+|||++.+.++
T Consensus 168 ~~vLL~GppGtGKT~lA~aia 188 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVA 188 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 568999999999999999994
No 295
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.11 E-value=0.18 Score=55.71 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
..++|.||.|+|||++.+.++
T Consensus 149 ~~vLL~GppGtGKT~la~aia 169 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVA 169 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 568999999999999999993
No 296
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.11 E-value=0.083 Score=54.78 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChhhHHhhHHh
Q 003258 352 RVVVITGPNTGGKTASMKTLGL 373 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGl 373 (835)
..+.|+||.|+|||++.+.++-
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHHH
Confidence 4578999999999999999943
No 297
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.09 E-value=0.078 Score=56.75 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChhhHHhhHHh
Q 003258 352 RVVVITGPNTGGKTASMKTLGL 373 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGl 373 (835)
..+.|+||.|+|||++.+.|.-
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHHHH
Confidence 4578999999999999999943
No 298
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.00 E-value=0.14 Score=57.86 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
..++|.||.|+||||+.+.|+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia 71 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIA 71 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 358999999999999999993
No 299
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.97 E-value=0.33 Score=56.20 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=65.9
Q ss_pred ceEEEEEcCCCCChhhHHhhHHh---hhh--hcccceeecCCCCC---CchHHHHHHHHcCCcccc--cCCcccchHHHH
Q 003258 351 TRVVVITGPNTGGKTASMKTLGL---ASL--MSKAGLYLPAKNHP---RLPWFDLILADIGDHQSL--EQNLSTFSGHIS 420 (835)
Q Consensus 351 ~~~~~I~GpNGsGKSTlLK~iGl---i~~--ma~~G~~vP~~~~~---~i~~~d~i~~~ig~~~~~--~~~lstfSgg~~ 420 (835)
..+++|+|+-|.|||||.+.+.- ..+ .....+++..+... .......++..++..... -......+.+..
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l 231 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVL 231 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHH
Confidence 48999999999999999998852 111 11234556544422 123456677777754321 111122222221
Q ss_pred HHHHHHHHcCC-CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhh
Q 003258 421 RIVDILELVSR-ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 479 (835)
Q Consensus 421 rl~~~~~la~~-~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~~~ 479 (835)
.-.+...+..+ +-||+||-.-. ...+.+ .. ..|+.||+||-+..+...
T Consensus 232 ~~~l~~~L~~~kr~LlVLDdv~~------~~~~~~--~~---~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 232 KRMICNALIDRPNTLFVFDDVVQ------EETIRW--AQ---ELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHHHHTTSTTEEEEEEEECC------HHHHHH--HH---HTTCEEEEEESBGGGGGG
T ss_pred HHHHHHHHcCCCcEEEEEECCCC------chhhcc--cc---cCCCEEEEEcCCHHHHHH
Confidence 22222334564 78999997654 112211 11 158899999998765543
No 300
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.95 E-value=0.13 Score=54.80 Aligned_cols=43 Identities=16% Similarity=0.252 Sum_probs=26.6
Q ss_pred CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003258 431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (835)
Q Consensus 431 ~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e 475 (835)
++.+|++||.-.-+.......|.. +++... .+..+|++|++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~-~le~~~-~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRS-FMEAYS-SNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHH-HHHHHG-GGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHH-HHHhCC-CCcEEEEEeCCcc
Confidence 678999999965442444444444 333322 2467888888754
No 301
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.95 E-value=0.22 Score=56.36 Aligned_cols=99 Identities=13% Similarity=0.185 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhhcccceee-cCCCCCCchHHHHHHHHcCCcccccCCcccchH-HHH--HHHHHHH
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYL-PAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG-HIS--RIVDILE 427 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~v-P~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSg-g~~--rl~~~~~ 427 (835)
+-+.|.||.|+|||+|.|+|+-- +|... ...+ ..-.+.+.| +++ |-.+..+
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e-----~~~~fi~vs~--------------------s~L~sk~vGesek~ir~lF~~A 298 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANR-----TDATFIRVIG--------------------SELVQKYVGEGARMVRELFEMA 298 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHH-----HTCEEEEEEG--------------------GGGCCCSSSHHHHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHhc-----cCCCeEEEEh--------------------HHhhcccCCHHHHHHHHHHHHH
Confidence 56899999999999999999221 12111 0010 011222222 233 3344456
Q ss_pred HcCCCcEEEEeCCCCCCCH---------HhHHHHHHHHHHHHhc----CCcEEEEEecchh
Q 003258 428 LVSRESLVLIDEIGSGTDP---------SEGVALATSILQYLRD----RVGLAVVTTHYAD 475 (835)
Q Consensus 428 la~~~~LlLLDEp~~glDp---------~~~~aL~~all~~l~~----~~~~viitTH~~e 475 (835)
....|++|++||.-+-... .........++..+.. .+..||.+|+..+
T Consensus 299 r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 299 RTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp HHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT
T ss_pred HhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcc
Confidence 6688999999998543211 1112222235555432 2447888998865
No 302
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.94 E-value=0.02 Score=57.11 Aligned_cols=20 Identities=45% Similarity=0.795 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
+.++|+||+|+|||||++.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L 21 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 45899999999999999988
No 303
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.94 E-value=0.025 Score=57.92 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.7
Q ss_pred cCCceEEEEEcCCCCChhhHHhhH
Q 003258 348 ECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.++ .+++|+|+|||||||+.+.+
T Consensus 14 ~~~-~~i~i~G~~gsGKst~~~~l 36 (236)
T 1q3t_A 14 MKT-IQIAIDGPASSGKSTVAKII 36 (236)
T ss_dssp CCC-CEEEEECSSCSSHHHHHHHH
T ss_pred cCC-cEEEEECCCCCCHHHHHHHH
Confidence 345 78999999999999999998
No 304
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.93 E-value=0.025 Score=53.95 Aligned_cols=20 Identities=40% Similarity=0.564 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+||.||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999988
No 305
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.86 E-value=0.025 Score=55.74 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+||+|+|||||++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l 26 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKL 26 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHH
Confidence 58899999999999999998
No 306
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.80 E-value=0.027 Score=53.90 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
..++|+|+||+|||||++.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l 23 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNAL 23 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 307
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.75 E-value=0.031 Score=56.33 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
.+++|+|++||||||+.+.+.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999993
No 308
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.74 E-value=0.086 Score=52.74 Aligned_cols=121 Identities=16% Similarity=0.230 Sum_probs=61.8
Q ss_pred CCceEEEEEcCCCCChhhHHhhHHhhhhh-c-ccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHHH
Q 003258 349 CETRVVVITGPNTGGKTASMKTLGLASLM-S-KAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDIL 426 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~iGli~~m-a-~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~~ 426 (835)
+| .+.+++||-|+||||.+-.+..-..- . +..++.|... .+.+ -..+...+|..-.. ..++... .+.
T Consensus 7 ~g-~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d-~r~~-~~~i~s~~g~~~~a-~~~~~~~-------~i~ 75 (191)
T 1xx6_A 7 HG-WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEID-NRYS-KEDVVSHMGEKEQA-VAIKNSR-------EIL 75 (191)
T ss_dssp CC-EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC---------CEEECTTSCEEEC-EEESSST-------HHH
T ss_pred CC-EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC-ccch-HHHHHhhcCCceee-EeeCCHH-------HHH
Confidence 46 89999999999999877655222111 1 1223334332 1111 11222333332110 0112221 223
Q ss_pred HHcC-CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecch-----------hHHhhhcccccc
Q 003258 427 ELVS-RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-----------DLSCLKDKDTRF 486 (835)
Q Consensus 427 ~la~-~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~-----------el~~~~~~~~~~ 486 (835)
..+. +.++|++||.-. +|+..- + .++.+...+..||++.++. +|..+||.+..+
T Consensus 76 ~~~~~~~dvViIDEaqf-l~~~~v----~-~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el 141 (191)
T 1xx6_A 76 KYFEEDTEVIAIDEVQF-FDDEIV----E-IVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKI 141 (191)
T ss_dssp HHCCTTCSEEEECSGGG-SCTHHH----H-HHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEEC
T ss_pred HHHhccCCEEEEECCCC-CCHHHH----H-HHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEee
Confidence 3333 478999999654 665542 2 3444555588999999854 345567766443
No 309
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.65 E-value=0.03 Score=58.39 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+|||||||||+-+.|
T Consensus 2 ~li~I~G~~GSGKSTla~~L 21 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQI 21 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHH
Confidence 46899999999999999998
No 310
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.51 E-value=0.036 Score=54.24 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.1
Q ss_pred CCceEEEEEcCCCCChhhHHhhH
Q 003258 349 CETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.+ .+++|+|+.||||||+.+.+
T Consensus 4 ~~-~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 4 TP-ALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp CC-EEEEEEESTTSSHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 45 78999999999999999998
No 311
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.50 E-value=0.31 Score=48.89 Aligned_cols=132 Identities=14% Similarity=0.046 Sum_probs=66.6
Q ss_pred EEEEEcCCCCChhhHHhhHHhhhhhc-ccceee-cCCCCCCchHHHHHHHHcCCcccccCCcccch-----HH----HHH
Q 003258 353 VVVITGPNTGGKTASMKTLGLASLMS-KAGLYL-PAKNHPRLPWFDLILADIGDHQSLEQNLSTFS-----GH----ISR 421 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~iGli~~ma-~~G~~v-P~~~~~~i~~~d~i~~~ig~~~~~~~~lstfS-----gg----~~r 421 (835)
.+.|.++||-||||+-=-+|+-.+-. ..-+++ +..+....+ -..++..++.+-.....--++. .+ ...
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~g-E~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNG-ERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCH-HHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCcc-HHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 57777889999999865554433211 111122 212211111 2234444431100000000011 11 113
Q ss_pred HHHHHHHc--CCCcEEEEeCCCCC--CCHHhHHHHHHHHHHHHhcC--CcEEEEEecch--hHHhhhcccccccCC
Q 003258 422 IVDILELV--SRESLVLIDEIGSG--TDPSEGVALATSILQYLRDR--VGLAVVTTHYA--DLSCLKDKDTRFENA 489 (835)
Q Consensus 422 l~~~~~la--~~~~LlLLDEp~~g--lDp~~~~aL~~all~~l~~~--~~~viitTH~~--el~~~~~~~~~~~n~ 489 (835)
+..++..+ .+.+||||||++.. ++......+.. .+.++ ...+|+|+++. ++..+||.+-.+..-
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~----~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVIS----ALNARPGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHH----HHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHH----HHHhCcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 44455555 56799999999762 22222233433 34333 46899999994 488888877666543
No 312
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.37 E-value=0.038 Score=53.40 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
..++|+|++|+|||||++.+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l 24 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNAL 24 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 67899999999999999999
No 313
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.36 E-value=0.038 Score=53.27 Aligned_cols=20 Identities=15% Similarity=0.399 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+||+||||||+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L 22 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREF 22 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHH
Confidence 57899999999999999998
No 314
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.33 E-value=0.037 Score=53.52 Aligned_cols=20 Identities=25% Similarity=0.692 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+||.||||||+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~L 23 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCL 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999999
No 315
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.30 E-value=0.11 Score=63.71 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChhhHHhhHHhh
Q 003258 352 RVVVITGPNTGGKTASMKTLGLA 374 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli 374 (835)
..+.|+||+|+|||++.+.++-.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999443
No 316
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.26 E-value=0.038 Score=53.82 Aligned_cols=20 Identities=40% Similarity=0.461 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+||.||||||+.+.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L 23 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLA 23 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 317
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.25 E-value=0.1 Score=55.19 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhHH
Q 003258 353 VVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~iG 372 (835)
.++|.||.|+||||+.+.++
T Consensus 48 ~~ll~G~~G~GKT~la~~l~ 67 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALA 67 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHH
Confidence 58999999999999999983
No 318
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.22 E-value=0.038 Score=53.50 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|++|+|||||++.+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l 27 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNAL 27 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 319
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=93.14 E-value=0.035 Score=64.57 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=23.6
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
++.+.+... ..++|.|..||||||+|+++
T Consensus 206 pv~~DL~k~-pHlLIaG~TGSGKS~~L~tl 234 (574)
T 2iut_A 206 PIITDLAKM-PHLLVAGTTGSGKSVGVNAM 234 (574)
T ss_dssp EEEEEGGGS-CCEEEECCTTSSHHHHHHHH
T ss_pred EEEEEhhhC-CeeEEECCCCCCHHHHHHHH
Confidence 444555555 57899999999999999998
No 320
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.09 E-value=0.032 Score=57.93 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.3
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhH
Q 003258 347 VECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
...+ .+++|+||+||||||+.+.+
T Consensus 29 ~~~~-~~i~l~G~~GsGKSTla~~L 52 (253)
T 2p5t_B 29 SKQP-IAILLGGQSGAGKTTIHRIK 52 (253)
T ss_dssp CSSC-EEEEEESCGGGTTHHHHHHH
T ss_pred ccCC-eEEEEECCCCCCHHHHHHHH
Confidence 3456 78999999999999999998
No 321
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.08 E-value=0.038 Score=53.58 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+||+||||||+.+.|
T Consensus 6 ~i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4889999999999999999
No 322
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.07 E-value=0.21 Score=52.46 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
..+.|+||.|+|||++.+.++
T Consensus 51 ~~vll~G~~GtGKT~la~~la 71 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLA 71 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999994
No 323
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.04 E-value=0.044 Score=58.24 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=20.2
Q ss_pred CCceEEEEEcCCCCChhhHHhhH
Q 003258 349 CETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.+ .+++|+||+||||||+.+.+
T Consensus 32 ~~-~livl~G~sGsGKSTla~~L 53 (287)
T 1gvn_B 32 SP-TAFLLGGQPGSGKTSLRSAI 53 (287)
T ss_dssp SC-EEEEEECCTTSCTHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 45 78999999999999999998
No 324
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=92.95 E-value=0.075 Score=59.20 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.9
Q ss_pred ecCCceEEEEEcCCCCChhhHHhhH
Q 003258 347 VECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 347 l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+..+ ..++|+|+||+|||||++.+
T Consensus 19 i~~~-~kvgIVG~pnvGKSTL~n~L 42 (396)
T 2ohf_A 19 FGTS-LKIGIVGLPNVGKSTFFNVL 42 (396)
T ss_dssp SSSC-CCEEEECCSSSSHHHHHHHH
T ss_pred ccCC-CEEEEECCCCCCHHHHHHHH
Confidence 3455 56899999999999999999
No 325
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.95 E-value=0.043 Score=54.02 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
+++|+|+.||||||+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L 20 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEI 20 (205)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 5899999999999999999
No 326
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.88 E-value=0.051 Score=53.58 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+|+.||||||+.+.+
T Consensus 9 ~~I~i~G~~GsGKST~~~~L 28 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALL 28 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999999
No 327
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.78 E-value=0.05 Score=52.97 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=18.0
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|++|+|||||++.+
T Consensus 4 kv~ivG~~gvGKStLl~~l 22 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQL 22 (184)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999999
No 328
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.68 E-value=0.22 Score=50.66 Aligned_cols=123 Identities=19% Similarity=0.221 Sum_probs=61.1
Q ss_pred cCCceEEEEEcCCCCChhhHHhhHHhhhhhc--ccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHHHHHHHHH
Q 003258 348 ECETRVVVITGPNTGGKTASMKTLGLASLMS--KAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI 425 (835)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLK~iGli~~ma--~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl~~~ 425 (835)
.+| .+.+++||=|+||||.|-.+..-..-+ +.-++.|... .+.+ -..+...+|..-... .++... .+
T Consensus 26 ~~G-~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d-~R~g-e~~i~s~~g~~~~a~-~~~~~~-------~~ 94 (214)
T 2j9r_A 26 QNG-WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID-NRYS-EEDVVSHNGLKVKAV-PVSASK-------DI 94 (214)
T ss_dssp CSC-EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-------------------CCEE-ECSSGG-------GG
T ss_pred CCC-EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC-Ccch-HHHHHhhcCCeeEEe-ecCCHH-------HH
Confidence 457 899999999999999876653222221 1223444433 2221 224555555432111 111111 12
Q ss_pred HHHcC-CCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh-----------HHhhhccccccc
Q 003258 426 LELVS-RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-----------LSCLKDKDTRFE 487 (835)
Q Consensus 426 ~~la~-~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e-----------l~~~~~~~~~~~ 487 (835)
...+. +.++|++||.-- +|+..- + ++..+...+..||++-++.+ |..+||.+..+.
T Consensus 95 ~~~~~~~~dvViIDEaQF-~~~~~V----~-~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 95 FKHITEEMDVIAIDEVQF-FDGDIV----E-VVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp GGGCCSSCCEEEECCGGG-SCTTHH----H-HHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred HHHHhcCCCEEEEECccc-CCHHHH----H-HHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 22233 478999999865 655433 2 34444555889999999432 445777665543
No 329
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.42 E-value=0.043 Score=53.36 Aligned_cols=20 Identities=35% Similarity=0.383 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+|+.||||||+.+.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l 31 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKEL 31 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHH
Confidence 67899999999999999998
No 330
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.37 E-value=0.057 Score=55.83 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-+++|+||+||||||+.+.|
T Consensus 10 ~~i~i~G~~GsGKsTla~~l 29 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGL 29 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 331
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.33 E-value=0.03 Score=55.87 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
+++|.||+||||||+++.|
T Consensus 2 ~I~i~G~~GsGKsTl~~~L 20 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKL 20 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 6899999999999999998
No 332
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.19 E-value=0.069 Score=52.03 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+|+.||||||+.+.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L 23 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARI 23 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999988
No 333
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.19 E-value=0.067 Score=52.83 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.2
Q ss_pred CCceEEEEEcCCCCChhhHHhhH
Q 003258 349 CETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+| .+++|+|+.||||||+.+.+
T Consensus 3 ~~-~~I~l~G~~GsGKsT~~~~L 24 (204)
T 2v54_A 3 RG-ALIVFEGLDKSGKTTQCMNI 24 (204)
T ss_dssp CC-CEEEEECCTTSSHHHHHHHH
T ss_pred CC-cEEEEEcCCCCCHHHHHHHH
Confidence 45 78999999999999999999
No 334
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.11 E-value=0.065 Score=53.01 Aligned_cols=19 Identities=32% Similarity=0.730 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
+++|+|++||||||+.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~l 22 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRV 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 335
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.10 E-value=0.066 Score=52.48 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
+++|+|+.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLL 20 (197)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999998
No 336
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.09 E-value=0.53 Score=50.80 Aligned_cols=115 Identities=12% Similarity=0.050 Sum_probs=58.8
Q ss_pred eEEEEEcCCCCChhhHHhhHH-hhhhhccc-c------eeecCCC-CCCchHHHHHHHHcCCcccccCCcccchHHHHHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG-LASLMSKA-G------LYLPAKN-HPRLPWFDLILADIGDHQSLEQNLSTFSGHISRI 422 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG-li~~ma~~-G------~~vP~~~-~~~i~~~d~i~~~ig~~~~~~~~lstfSgg~~rl 422 (835)
..+.|+||.|+|||++.+.+. -+.-.+.. + .++-+.. ...-..+..++..+.... . .... + +..+
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~-~--~~~~-~--~~~L 119 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKEN-L--CGDI-S--LEAL 119 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC-----CCC-C--HHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCC-C--CchH-H--HHHH
Confidence 678999999999999999992 11111111 0 1222211 112234666776663221 1 0011 1 1223
Q ss_pred HHHHHH----cCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcC--CcEEEEEecchhH
Q 003258 423 VDILEL----VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR--VGLAVVTTHYADL 476 (835)
Q Consensus 423 ~~~~~l----a~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~--~~~viitTH~~el 476 (835)
...... ...+.+++|||.-.=. ....|.. +++..... ..++|.++++.++
T Consensus 120 ~~~f~~~~~~~~~~~ii~lDE~d~l~---~q~~L~~-l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 120 NFYITNVPKAKKRKTLILIQNPENLL---SEKILQY-FEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHSCGGGSCEEEEEEECCSSSC---CTHHHHH-HHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHhhhccCCceEEEEecHHHhh---cchHHHH-HHhcccccCCcEEEEEEecCccc
Confidence 222222 3456799999997655 2334444 55533222 3467778877653
No 337
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.07 E-value=0.29 Score=55.07 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
.+++|+||+|+||||+...++
T Consensus 100 ~vI~ivG~~GvGKTTla~~La 120 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLA 120 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999884
No 338
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.05 E-value=0.069 Score=51.93 Aligned_cols=20 Identities=20% Similarity=0.420 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+||.||||||+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L 21 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKV 21 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999998
No 339
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.96 E-value=0.078 Score=52.47 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+|+.||||||+.+.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLL 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 68999999999999999999
No 340
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.95 E-value=0.075 Score=52.03 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=20.2
Q ss_pred CCceEEEEEcCCCCChhhHHhhH
Q 003258 349 CETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
++ .+++|+|+.||||||+.+.+
T Consensus 8 ~~-~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 8 KT-NIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp TS-CEEEEEECTTSSHHHHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHHHHH
Confidence 45 78999999999999999998
No 341
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=91.90 E-value=0.04 Score=60.49 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=24.3
Q ss_pred ccceeecCCceE--EEEEcCCCCChhhHHhhH
Q 003258 342 PIDIKVECETRV--VVITGPNTGGKTASMKTL 371 (835)
Q Consensus 342 ~isl~l~~g~~~--~~I~GpNGsGKSTlLK~i 371 (835)
.+++.+.+| ++ ++|+||+|+||||+.+++
T Consensus 14 ~l~~~i~~g-~~~~i~l~G~~G~GKTTl~~~l 44 (359)
T 2ga8_A 14 LLDNRIEDN-YRVCVILVGSPGSGKSTIAEEL 44 (359)
T ss_dssp HHHHTTTTC-SCEEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHhccC-CeeEEEEECCCCCcHHHHHHHH
Confidence 556666666 44 899999999999999999
No 342
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.90 E-value=0.064 Score=51.99 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=15.0
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+|+.||||||+.+.+
T Consensus 6 ~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp CEEEEECCC----CHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 343
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.82 E-value=0.32 Score=51.70 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=20.1
Q ss_pred CCceEEEEEcCCCCChhhHHhhH
Q 003258 349 CETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.| .+++|+||-|+|||||++.+
T Consensus 30 ~~-~~v~i~G~~G~GKT~Ll~~~ 51 (350)
T 2qen_A 30 NY-PLTLLLGIRRVGKSSLLRAF 51 (350)
T ss_dssp HC-SEEEEECCTTSSHHHHHHHH
T ss_pred cC-CeEEEECCCcCCHHHHHHHH
Confidence 35 78999999999999999998
No 344
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.68 E-value=0.37 Score=50.77 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=17.9
Q ss_pred EEEEcCCCCChhhHHhhHH
Q 003258 354 VVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 354 ~~I~GpNGsGKSTlLK~iG 372 (835)
++|.||.|+||||+.+.++
T Consensus 45 ~ll~G~~G~GKt~la~~l~ 63 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLA 63 (323)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 8999999999999999983
No 345
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.58 E-value=0.16 Score=50.91 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=61.9
Q ss_pred CCceEEEEEcCCCCChh-hHHhhHHhhhhhcccceee-cCCCCCCchHHHHHHHHcCCccc--ccCCcccchHHHHHHHH
Q 003258 349 CETRVVVITGPNTGGKT-ASMKTLGLASLMSKAGLYL-PAKNHPRLPWFDLILADIGDHQS--LEQNLSTFSGHISRIVD 424 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKS-TlLK~iGli~~ma~~G~~v-P~~~~~~i~~~d~i~~~ig~~~~--~~~~lstfSgg~~rl~~ 424 (835)
.| ++..|+||-|+||| .||+.++-...-.+..+++ |.-. .+.+ +.+...+|..-. .......|-.
T Consensus 19 ~g-~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D-~R~~--~~i~S~~g~~~~A~~~~~~~d~~~------- 87 (195)
T 1w4r_A 19 RG-QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD-TRYS--SSFCTHDRNTMEALPACLLRDVAQ------- 87 (195)
T ss_dssp CC-EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTC-CCGG--GSCCHHHHHHSEEEEESSGGGGHH-------
T ss_pred ce-EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccC-ccch--hhhhhccCCcccceecCCHHHHHH-------
Confidence 46 89999999999999 6888887665543333333 5422 2332 223334432111 1122222211
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhH
Q 003258 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL 476 (835)
Q Consensus 425 ~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el 476 (835)
...+.++|++||.=-= +. +.+ ++..+.+.|..||++.++.+.
T Consensus 88 ---~~~~~DvIlIDEaQFf--k~----~ve-~~~~L~~~gk~VI~~GL~~DF 129 (195)
T 1w4r_A 88 ---EALGVAVIGIDEGQFF--PD----IVE-FCEAMANAGKTVIVAALDGTF 129 (195)
T ss_dssp ---HHHTCSEEEESSGGGC--TT----HHH-HHHHHHHTTCEEEEEEESBCT
T ss_pred ---hccCCCEEEEEchhhh--HH----HHH-HHHHHHHCCCeEEEEeccccc
Confidence 1235789999997433 22 222 335566679999999999764
No 346
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.56 E-value=0.083 Score=51.86 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+|++||||||++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L 24 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKW 24 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999887
No 347
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.56 E-value=0.09 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.7
Q ss_pred CCceEEEEEcCCCCChhhHHhhHH
Q 003258 349 CETRVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~iG 372 (835)
.+ .+++|+|+.||||||+.+.+.
T Consensus 9 ~~-~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KG-KFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CS-CEEEEEESTTSSHHHHHHHHH
T ss_pred cC-CEEEEEcCCCCCHHHHHHHHH
Confidence 46 789999999999999999983
No 348
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.52 E-value=0.088 Score=52.34 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=21.2
Q ss_pred cCCceEEEEEcCCCCChhhHHhhHH
Q 003258 348 ECETRVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLK~iG 372 (835)
.++ .+++|+|+.||||||+.+.+.
T Consensus 7 ~~~-~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 7 RRG-ALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCC-CEEEEEESTTSSHHHHHHHHH
T ss_pred cCC-cEEEEECCCCCCHHHHHHHHH
Confidence 456 789999999999999999993
No 349
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.52 E-value=0.22 Score=58.61 Aligned_cols=20 Identities=40% Similarity=0.622 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+||.|+||||++..+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~l 184 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKL 184 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 68999999999999999887
No 350
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.39 E-value=0.088 Score=51.22 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
..++|+||.||||||+.+.+
T Consensus 6 ~~i~l~G~~GsGKst~a~~L 25 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQL 25 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 351
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=91.26 E-value=0.11 Score=57.35 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=17.4
Q ss_pred EEEEcCCCCChhhHHhhH
Q 003258 354 VVITGPNTGGKTASMKTL 371 (835)
Q Consensus 354 ~~I~GpNGsGKSTlLK~i 371 (835)
++|+|++|+|||||++.+
T Consensus 4 v~IVG~pnvGKSTL~n~L 21 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNAL 21 (368)
T ss_dssp EEEECCSSSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999999999
No 352
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.20 E-value=0.3 Score=59.11 Aligned_cols=100 Identities=17% Similarity=0.257 Sum_probs=54.1
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCcccccCCcccchHH-HHHHHHH--HHH
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH-ISRIVDI--LEL 428 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~~~lstfSgg-~~rl~~~--~~l 428 (835)
+-+.|.||.|+|||+|.|.++- .+|.+.. .+... .+ ++.+.|+ ++++..+ .+.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~-----elg~~~~-----~v~~~-~l-------------~sk~~gese~~lr~lF~~A~ 294 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVAN-----ETGAFFF-----LINGP-EI-------------MSKLAGESESNLRKAFEEAE 294 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHT-----TTTCEEE-----EEEHH-HH-------------HSSCTTHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHH-----HhCCeEE-----EEEhH-Hh-------------hcccchHHHHHHHHHHHHHH
Confidence 5689999999999999999921 1222110 11111 11 1233333 3344444 455
Q ss_pred cCCCcEEEEeCCCCC------CCHHhHHHHHHHHHHHHh---c-CCcEEEEEecchh
Q 003258 429 VSRESLVLIDEIGSG------TDPSEGVALATSILQYLR---D-RVGLAVVTTHYAD 475 (835)
Q Consensus 429 a~~~~LlLLDEp~~g------lDp~~~~aL~~all~~l~---~-~~~~viitTH~~e 475 (835)
...|++|++||.-+= .+-.....+...++..+. + .+..||.+|...+
T Consensus 295 ~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d 351 (806)
T 3cf2_A 295 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (806)
T ss_dssp TSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTT
T ss_pred HcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChh
Confidence 678999999997321 111122233333444432 2 2456788888765
No 353
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.19 E-value=0.89 Score=52.62 Aligned_cols=115 Identities=13% Similarity=0.120 Sum_probs=58.2
Q ss_pred ceEEEEEcCCCCChhhHHhhHHhh----hhhcc-cceeecCCCCCC---chHHHHHHHHcCCcccc-cCCcccchHHHHH
Q 003258 351 TRVVVITGPNTGGKTASMKTLGLA----SLMSK-AGLYLPAKNHPR---LPWFDLILADIGDHQSL-EQNLSTFSGHISR 421 (835)
Q Consensus 351 ~~~~~I~GpNGsGKSTlLK~iGli----~~ma~-~G~~vP~~~~~~---i~~~d~i~~~ig~~~~~-~~~lstfSgg~~r 421 (835)
..+++|+||-|.|||||.+.+.-- .-... .-+++....... +..+..+...++..... .....++..-..+
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 226 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDR 226 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHH
Confidence 489999999999999999988311 10000 112333332111 11122333344421111 1122222222223
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHH
Q 003258 422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS 477 (835)
Q Consensus 422 l~~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~ 477 (835)
+...+.-..+|-||+||..-. . . .++.+ ..++.||+||.+..+.
T Consensus 227 l~~~l~~~~~~~LLVLDdv~~---~---~-----~l~~l-~~~~~ilvTsR~~~~~ 270 (591)
T 1z6t_A 227 LRILMLRKHPRSLLILDDVWD---S---W-----VLKAF-DSQCQILLTTRDKSVT 270 (591)
T ss_dssp HHHHHHHTCTTCEEEEEEECC---H---H-----HHHTT-CSSCEEEEEESCGGGG
T ss_pred HHHHHccCCCCeEEEEeCCCC---H---H-----HHHHh-cCCCeEEEECCCcHHH
Confidence 433333333678999998742 1 1 22333 3477999999886644
No 354
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.10 E-value=0.1 Score=50.71 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+|+.||||||+.+.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 355
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.82 E-value=0.11 Score=50.68 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
+++|+|+.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKL 20 (195)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 356
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=90.81 E-value=0.094 Score=57.76 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.3
Q ss_pred CceEEEEEcCCCCChhhHHhhH
Q 003258 350 ETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 350 g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+..+++|+|+||+||||||+.+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L 199 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSL 199 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3356899999999999999999
No 357
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.78 E-value=0.11 Score=52.03 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+||.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 358
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.60 E-value=0.097 Score=50.17 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+|+.||||||+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 359
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.50 E-value=0.55 Score=52.48 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+|++||||||+.+.+
T Consensus 259 ~lIil~G~pGSGKSTla~~L 278 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEH 278 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 89999999999999999998
No 360
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.48 E-value=0.13 Score=53.58 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+|+.||||||+.+.+
T Consensus 5 ~lIvl~G~pGSGKSTla~~L 24 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNL 24 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHH
Confidence 68999999999999999998
No 361
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.44 E-value=0.12 Score=49.25 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp EEEEESCTTSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 362
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.32 E-value=0.12 Score=50.57 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.5
Q ss_pred cCCceEEEEEcCCCCChhhHHhhH
Q 003258 348 ECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
..+ .+++|+|+.||||||+.+.+
T Consensus 10 ~~~-~~I~l~G~~GsGKsT~a~~L 32 (199)
T 2bwj_A 10 RKC-KIIFIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp HHS-CEEEEEECTTSSHHHHHHHH
T ss_pred CCC-CEEEEECCCCCCHHHHHHHH
Confidence 345 68999999999999999998
No 363
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.29 E-value=0.13 Score=50.78 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+|+.||||||+.+.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L 35 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKL 35 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999988
No 364
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.28 E-value=0.13 Score=51.57 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+||.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 365
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.24 E-value=0.098 Score=55.70 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=16.4
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
.+++|+||.||||||+.+.+.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~ 26 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFD 26 (290)
T ss_dssp CEEEEESCC---CCTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999983
No 366
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.20 E-value=0.13 Score=50.26 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=18.4
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
++++..... .++|+|++|+|||||++.+
T Consensus 16 ~~~~~~~~~--ki~~vG~~~vGKSsli~~l 43 (190)
T 1m2o_B 16 SLGLWNKHG--KLLFLGLDNAGKTTLLHML 43 (190)
T ss_dssp --------C--EEEEEESTTSSHHHHHHHH
T ss_pred HhhccCCcc--EEEEECCCCCCHHHHHHHH
Confidence 455555444 6799999999999999998
No 367
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=90.16 E-value=0.66 Score=49.65 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
..+++.||.|+||||+.+.+
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~l 38 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLEL 38 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 368
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.15 E-value=0.13 Score=52.05 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+||.||||||+.+.|
T Consensus 8 ~~I~l~G~~GsGKsT~a~~L 27 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRI 27 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 67999999999999999998
No 369
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.14 E-value=0.12 Score=54.02 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
..++|+|++|+|||||++.+
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l 23 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNAL 23 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 370
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=90.09 E-value=0.77 Score=46.78 Aligned_cols=110 Identities=18% Similarity=0.209 Sum_probs=55.3
Q ss_pred cCCceEEEEEcCCCCChhh-HHhhHHhhhhhc-ccceeecCCCCCCchHHHHHHHHcCCccccc--CCcccchHHHHHHH
Q 003258 348 ECETRVVVITGPNTGGKTA-SMKTLGLASLMS-KAGLYLPAKNHPRLPWFDLILADIGDHQSLE--QNLSTFSGHISRIV 423 (835)
Q Consensus 348 ~~g~~~~~I~GpNGsGKST-lLK~iGli~~ma-~~G~~vP~~~~~~i~~~d~i~~~ig~~~~~~--~~lstfSgg~~rl~ 423 (835)
..| .+.+|+||-|+|||| ||+.+--...-. +..++.|+-. .+.+ -..|.+++|..-... .....+ ..
T Consensus 26 ~~G-~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D-~R~~-~~~I~Sr~G~~~~a~~v~~~~di----~~-- 96 (219)
T 3e2i_A 26 HSG-WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID-DRYH-KEKVVSHNGNAIEAINISKASEI----MT-- 96 (219)
T ss_dssp -CC-EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-------------CBTTBCCEEEEESSGGGG----GG--
T ss_pred CCc-eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC-Ccch-hhhHHHhcCCceeeEEeCCHHHH----HH--
Confidence 457 899999999999999 777762221111 2334555543 2211 234566666542211 111111 00
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 003258 424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475 (835)
Q Consensus 424 ~~~~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~e 475 (835)
.+..+.++|++||-=- +|+. +.+ .+..+.+.|..||+.-=+.+
T Consensus 97 ---~i~~~~dvV~IDEaQF-f~~~----~v~-~l~~la~~gi~Vi~~GLd~D 139 (219)
T 3e2i_A 97 ---HDLTNVDVIGIDEVQF-FDDE----IVS-IVEKLSADGHRVIVAGLDMD 139 (219)
T ss_dssp ---SCCTTCSEEEECCGGG-SCTH----HHH-HHHHHHHTTCEEEEEEESBC
T ss_pred ---HHhcCCCEEEEechhc-CCHH----HHH-HHHHHHHCCCEEEEeecccc
Confidence 0135788999999644 3332 223 33334456888888766653
No 371
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=90.08 E-value=0.31 Score=55.91 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChhhHHhhHHh
Q 003258 352 RVVVITGPNTGGKTASMKTLGL 373 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGl 373 (835)
.-+.|.||.|+|||++.+.++-
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGG
T ss_pred CeeEeecCchHHHHHHHHHHHH
Confidence 5689999999999999999944
No 372
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.05 E-value=0.089 Score=52.00 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=22.8
Q ss_pred ccceeecCCceEEEEEcCCCCChhhHHhhH
Q 003258 342 PIDIKVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 342 ~isl~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++..... .++|+|++|+|||||++.+
T Consensus 18 ~~~~~~~~~--ki~lvG~~~vGKSsLi~~l 45 (198)
T 1f6b_A 18 FLGLYKKTG--KLVFLGLDNAGKTTLLHML 45 (198)
T ss_dssp HHTCTTCCE--EEEEEEETTSSHHHHHHHH
T ss_pred HhhccCCCc--EEEEECCCCCCHHHHHHHH
Confidence 455655544 5799999999999999999
No 373
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=89.96 E-value=0.13 Score=58.04 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+||+|||||++.+
T Consensus 181 ~kvaivG~~gvGKSTLln~l 200 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAI 200 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 374
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.78 E-value=0.057 Score=52.74 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 25 ki~v~G~~~~GKSsli~~l 43 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRY 43 (191)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 5799999999999999998
No 375
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.77 E-value=0.14 Score=51.83 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
+++|+||.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 376
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.68 E-value=1.1 Score=53.66 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhhHHhhHHh
Q 003258 353 VVVITGPNTGGKTASMKTLGL 373 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~iGl 373 (835)
.++|+||.|+|||++.+.++-
T Consensus 490 ~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 689999999999999999943
No 377
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.57 E-value=0.13 Score=56.69 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
..++|+||+|+||||+++.+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~ 55 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKML 55 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHH
Confidence 46799999999999999998
No 378
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.57 E-value=0.14 Score=51.61 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+||.||||||+.+.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 379
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=89.56 E-value=1.9 Score=46.43 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=55.9
Q ss_pred eEEEEEcCCCCChhhHHhhHHhhhhhcccceeecCCCCCCchHHHHHHHHcCCccc--ccCC--cccchHHHH-HHHHHH
Q 003258 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQS--LEQN--LSTFSGHIS-RIVDIL 426 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iGli~~ma~~G~~vP~~~~~~i~~~d~i~~~ig~~~~--~~~~--lstfSgg~~-rl~~~~ 426 (835)
..+.++||.|.||||+.+.++-...........|+.. ......+..... .+. ++.. -+..+.++- .+....
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~---c~~c~~~~~~~~-~d~~~~~~~~~~~~~~i~~ir~l~~~~ 100 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGH---CRGCQLMQAGTH-PDYYTLAPEKGKNTLGVDAVREVTEKL 100 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSC---SHHHHHHHHTCC-TTEEEECCCTTCSSBCHHHHHHHHHHT
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCC---CHHHHHHhcCCC-CCEEEEeccccCCCCCHHHHHHHHHHH
Confidence 4689999999999999999832211100000122221 112222222111 111 1100 123333333 222111
Q ss_pred H---HcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcC--CcEEEEEecchh
Q 003258 427 E---LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR--VGLAVVTTHYAD 475 (835)
Q Consensus 427 ~---la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~--~~~viitTH~~e 475 (835)
. ...+..++|+||.-.-+ ... ..++++.+.+- +..+|++|++.+
T Consensus 101 ~~~~~~~~~kvviIdead~l~-~~a----~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 101 NEHARLGGAKVVWVTDAALLT-DAA----ANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp TSCCTTSSCEEEEESCGGGBC-HHH----HHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred hhccccCCcEEEEECchhhcC-HHH----HHHHHHHhcCCCCCeEEEEEeCChH
Confidence 1 12356899999985533 222 34566666553 356788888764
No 380
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.56 E-value=0.12 Score=53.31 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 22 l~I~lvG~~g~GKSSlin~l 41 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSI 41 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 45899999999999999998
No 381
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.55 E-value=0.17 Score=50.97 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+|+.||||||+.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 67899999999999999998
No 382
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.48 E-value=0.17 Score=49.98 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+|+.||||||+.+.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999998
No 383
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.27 E-value=0.17 Score=50.48 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCChhhHHhhH
Q 003258 351 TRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 351 ~~~~~I~GpNGsGKSTlLK~i 371 (835)
..+++|||+-||||||+.+.+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L 32 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEIL 32 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 368999999999999999998
No 384
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.14 E-value=0.13 Score=49.24 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|++|+|||||++.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l 38 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRL 38 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 56899999999999999998
No 385
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.13 E-value=0.18 Score=48.99 Aligned_cols=20 Identities=35% Similarity=0.694 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 49 ~~i~vvG~~g~GKSsll~~l 68 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLL 68 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 386
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.07 E-value=0.17 Score=52.18 Aligned_cols=20 Identities=15% Similarity=0.376 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+|+.||||||+.+.+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L 42 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKI 42 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999988
No 387
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.06 E-value=0.18 Score=48.85 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|++|+|||||++.+
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l 36 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQL 36 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 388
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.91 E-value=0.17 Score=53.38 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCChhhHHhhHH
Q 003258 351 TRVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 351 ~~~~~I~GpNGsGKSTlLK~iG 372 (835)
..+++|+|+.||||||+.+.+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999994
No 389
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=88.89 E-value=0.19 Score=48.09 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
++++|+|+-||||||+.+.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 390
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.78 E-value=0.12 Score=62.24 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
.-++|+||.|+||||+.+.++
T Consensus 208 ~~vlL~G~~GtGKT~la~~la 228 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHH
Confidence 567999999999999999994
No 391
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.77 E-value=0.19 Score=52.96 Aligned_cols=20 Identities=15% Similarity=0.399 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+||+||||||+.+.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L 22 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREF 22 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 392
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.76 E-value=0.21 Score=46.91 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 7 ~i~v~G~~~~GKssl~~~l 25 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRY 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4789999999999999998
No 393
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.66 E-value=0.24 Score=47.11 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l 29 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRF 29 (181)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999999
No 394
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.47 E-value=0.2 Score=50.13 Aligned_cols=19 Identities=16% Similarity=0.406 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+||.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFI 20 (214)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 395
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.46 E-value=0.2 Score=48.71 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+|+.||||||+-+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 396
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=88.30 E-value=4 Score=51.07 Aligned_cols=114 Identities=18% Similarity=0.252 Sum_probs=58.8
Q ss_pred CceEEEEEcCCCCChhhHHhhHHhh-hhh---cccce-eecCCCCCC---chHHHHHHHHcCCcccccCCcccchHHHHH
Q 003258 350 ETRVVVITGPNTGGKTASMKTLGLA-SLM---SKAGL-YLPAKNHPR---LPWFDLILADIGDHQSLEQNLSTFSGHISR 421 (835)
Q Consensus 350 g~~~~~I~GpNGsGKSTlLK~iGli-~~m---a~~G~-~vP~~~~~~---i~~~d~i~~~ig~~~~~~~~lstfSgg~~r 421 (835)
+.++++|+|+-|.|||||.+.+.-- ... ...+. ++....... +..+..+...++........... ...+ .
T Consensus 146 ~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~-~ 223 (1249)
T 3sfz_A 146 EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPL-NIEE-A 223 (1249)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCS-SHHH-H
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCC-CHHH-H
Confidence 3489999999999999999887211 000 11222 454443211 12244455555543322211111 1111 1
Q ss_pred HHHH-HHHcCC--CcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHH
Q 003258 422 IVDI-LELVSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS 477 (835)
Q Consensus 422 l~~~-~~la~~--~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~ 477 (835)
...+ ..+..+ +-||+||-.-. +. .++.+ ..++.||+||.+..+.
T Consensus 224 ~~~l~~~l~~~~~~~LlvlDd~~~---~~--------~~~~~-~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 224 KDRLRVLMLRKHPRSLLILDDVWD---PW--------VLKAF-DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHTSSSSCSCEEEEESCCC---HH--------HHTTT-CSSCEEEEEESSTTTT
T ss_pred HHHHHHHHhccCCCEEEEEecCCC---HH--------HHHhh-cCCCEEEEEcCCHHHH
Confidence 1122 223333 78999998642 21 12222 3478999999987654
No 397
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=88.19 E-value=0.38 Score=54.30 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
..++|+|+.|+|||||++.+
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l 43 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRI 43 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 47999999999999999999
No 398
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=88.15 E-value=0.21 Score=48.86 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=4.6
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 21 ~~i~v~G~~~~GKssli~~l 40 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMF 40 (208)
T ss_dssp EEEEEC--------------
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 399
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.14 E-value=0.25 Score=46.06 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 3 ki~v~G~~~~GKSsli~~l 21 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRL 21 (161)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 400
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.14 E-value=0.25 Score=46.54 Aligned_cols=19 Identities=32% Similarity=0.351 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 8 ~i~v~G~~~~GKssli~~l 26 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRY 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999998
No 401
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.13 E-value=0.21 Score=46.39 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++++|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKssl~~~l 23 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQL 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999998
No 402
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.08 E-value=0.24 Score=46.45 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRF 23 (170)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 403
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.07 E-value=0.26 Score=50.02 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.4
Q ss_pred CCceEEEEEcCCCCChhhHHhhH
Q 003258 349 CETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+| .+++|.||.||||||+++.+
T Consensus 5 ~g-~~i~~eG~~gsGKsT~~~~l 26 (213)
T 4edh_A 5 TG-LFVTLEGPEGAGKSTNRDYL 26 (213)
T ss_dssp CC-EEEEEECSTTSSHHHHHHHH
T ss_pred Cc-eEEEEEcCCCCCHHHHHHHH
Confidence 46 79999999999999999998
No 404
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.06 E-value=0.22 Score=46.76 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l 22 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIF 22 (166)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999999
No 405
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.04 E-value=0.24 Score=46.53 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 8 ~i~v~G~~~~GKSsli~~l 26 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRF 26 (170)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4799999999999999998
No 406
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.01 E-value=0.28 Score=46.09 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRF 23 (172)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 407
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.97 E-value=0.26 Score=50.75 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=20.0
Q ss_pred CCceEEEEEcCCCCChhhHHhhH
Q 003258 349 CETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
++ .+++|+||.||||||+.+.+
T Consensus 28 ~~-~~I~l~G~~GsGKsT~a~~L 49 (243)
T 3tlx_A 28 PD-GRYIFLGAPGSGKGTQSLNL 49 (243)
T ss_dssp CC-EEEEEECCTTSSHHHHHHHH
T ss_pred CC-cEEEEECCCCCCHHHHHHHH
Confidence 44 68999999999999999998
No 408
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=87.73 E-value=0.44 Score=52.40 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|++++|||||++.+
T Consensus 4 kI~IVG~pnvGKSTL~n~L 22 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNAL 22 (363)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999999
No 409
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.72 E-value=0.26 Score=48.62 Aligned_cols=21 Identities=38% Similarity=0.658 Sum_probs=18.0
Q ss_pred CceEEEEEcCCCCChhhHHhhH
Q 003258 350 ETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 350 g~~~~~I~GpNGsGKSTlLK~i 371 (835)
| .+.+|+||.|+||||++-.+
T Consensus 3 g-~i~vi~G~~gsGKTT~ll~~ 23 (184)
T 2orw_A 3 G-KLTVITGPMYSGKTTELLSF 23 (184)
T ss_dssp C-CEEEEEESTTSSHHHHHHHH
T ss_pred c-EEEEEECCCCCCHHHHHHHH
Confidence 5 78999999999999997444
No 410
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.68 E-value=0.24 Score=46.20 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l 23 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQF 23 (167)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999998
No 411
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.65 E-value=0.24 Score=46.21 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l 24 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQF 24 (168)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 412
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=87.52 E-value=0.24 Score=47.05 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 9 ~~i~v~G~~~~GKSsli~~l 28 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRY 28 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999988
No 413
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.40 E-value=0.27 Score=46.72 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
..++|+|+.|+|||||++.+
T Consensus 9 ~~i~v~G~~~~GKssl~~~l 28 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAI 28 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 414
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.33 E-value=0.24 Score=50.79 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=18.2
Q ss_pred cCCceEEEEEcCCCCChhhHHhhH
Q 003258 348 ECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.+| .+++|.||.||||||+.+.+
T Consensus 23 ~~g-~~I~~eG~~GsGKsT~~~~l 45 (227)
T 3v9p_A 23 ARG-KFITFEGIDGAGKTTHLQWF 45 (227)
T ss_dssp CCC-CEEEEECCC---CHHHHHHH
T ss_pred cCC-eEEEEECCCCCCHHHHHHHH
Confidence 467 89999999999999999998
No 415
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=87.32 E-value=1.6 Score=52.58 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhhHHhhHHhh
Q 003258 353 VVVITGPNTGGKTASMKTLGLA 374 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~iGli 374 (835)
.+.|+||.|+|||++.+.++-.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999543
No 416
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.32 E-value=0.26 Score=46.13 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 5 ki~v~G~~~~GKssli~~l 23 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQF 23 (167)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 417
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.31 E-value=0.26 Score=46.85 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l 27 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRY 27 (177)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999998
No 418
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.30 E-value=0.26 Score=46.41 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l 22 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTF 22 (169)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 419
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=87.29 E-value=0.26 Score=46.33 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRF 23 (170)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4799999999999999998
No 420
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.08 E-value=0.27 Score=46.51 Aligned_cols=19 Identities=32% Similarity=0.323 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 6 ki~i~G~~~vGKSsl~~~l 24 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLF 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHH
Confidence 4799999999999999998
No 421
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.05 E-value=0.28 Score=47.56 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 24 ~~i~v~G~~~~GKSsli~~l 43 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSL 43 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 56899999999999999999
No 422
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=87.04 E-value=0.27 Score=51.77 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|++|+|||||++.+
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L 23 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLI 23 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45899999999999999999
No 423
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=87.04 E-value=0.28 Score=47.29 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 24 ~~i~v~G~~~~GKSsli~~l 43 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNAL 43 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 424
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=87.03 E-value=0.27 Score=46.25 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l 27 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRL 27 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 45899999999999999998
No 425
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=87.00 E-value=7.1 Score=43.75 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCCChhhHHhhHH
Q 003258 351 TRVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 351 ~~~~~I~GpNGsGKSTlLK~iG 372 (835)
..+++++|++|+||||+.-.++
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3789999999999999987774
No 426
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.89 E-value=0.3 Score=50.40 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=20.4
Q ss_pred CCceEEEEEcCCCCChhhHHhhH
Q 003258 349 CETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+| .+++|.||.||||||+++.+
T Consensus 26 ~~-~~i~~eG~~GsGKsT~~~~l 47 (236)
T 3lv8_A 26 NA-KFIVIEGLEGAGKSTAIQVV 47 (236)
T ss_dssp CC-CEEEEEESTTSCHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 46 79999999999999999998
No 427
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.72 E-value=0.31 Score=49.65 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.5
Q ss_pred eecCCceEEEEEcCCCCChhhHHhhH
Q 003258 346 KVECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 346 ~l~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.+.+. ++++|+||.||||||..+.|
T Consensus 25 ~~~k~-kiI~llGpPGsGKgTqa~~L 49 (217)
T 3umf_A 25 KLAKA-KVIFVLGGPGSGKGTQCEKL 49 (217)
T ss_dssp CTTSC-EEEEEECCTTCCHHHHHHHH
T ss_pred hccCC-cEEEEECCCCCCHHHHHHHH
Confidence 34455 89999999999999999988
No 428
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=86.66 E-value=0.31 Score=53.13 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
.+++|+||+||||||+.+.|+
T Consensus 8 ~lI~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHH
Confidence 489999999999999999883
No 429
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=86.63 E-value=0.28 Score=47.14 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 3 ki~v~G~~~~GKSsli~~l 21 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRL 21 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999999998
No 430
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=86.47 E-value=0.33 Score=49.25 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCCChhhHHhhH
Q 003258 350 ETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 350 g~~~~~I~GpNGsGKSTlLK~i 371 (835)
| .+++|.|+.||||||.++.+
T Consensus 3 g-~~i~~eG~~gsGKsT~~~~l 23 (213)
T 4tmk_A 3 S-KYIVIEGLEGAGKTTARNVV 23 (213)
T ss_dssp C-CEEEEEECTTSCHHHHHHHH
T ss_pred C-eEEEEECCCCCCHHHHHHHH
Confidence 5 78999999999999999998
No 431
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.36 E-value=0.34 Score=48.72 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
..++|+|+.||||||+.+.|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~L 25 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFI 25 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 432
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=86.34 E-value=0.31 Score=46.31 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 10 ~~i~v~G~~~~GKssli~~l 29 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQF 29 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 433
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=86.25 E-value=0.32 Score=45.54 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 8 ~i~v~G~~~~GKssli~~l 26 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRF 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 434
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=86.24 E-value=0.31 Score=46.13 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 16 ~i~v~G~~~~GKssli~~l 34 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRF 34 (179)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 435
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=86.19 E-value=0.32 Score=46.64 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 6 ki~v~G~~~~GKSsli~~l 24 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQL 24 (189)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999999
No 436
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=86.11 E-value=0.36 Score=46.62 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 8 ~ki~v~G~~~~GKSsli~~l 27 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRL 27 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 437
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.03 E-value=0.37 Score=51.94 Aligned_cols=20 Identities=40% Similarity=0.629 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+||+|+|||||...+
T Consensus 4 ~~i~i~GptgsGKt~la~~L 23 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVML 23 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHH
Confidence 68899999999999999988
No 438
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=86.01 E-value=0.34 Score=52.37 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+||+|+||||+-+.+
T Consensus 6 ~~i~i~GptGsGKTtla~~L 25 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMAL 25 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999988
No 439
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.00 E-value=0.32 Score=47.26 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=17.8
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~ 40 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRY 40 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999876
No 440
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=85.99 E-value=0.26 Score=47.57 Aligned_cols=19 Identities=37% Similarity=0.615 Sum_probs=17.6
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 16 ki~vvG~~~~GKssL~~~l 34 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWI 34 (198)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999888
No 441
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=85.95 E-value=0.34 Score=45.32 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=17.3
Q ss_pred EEEEcCCCCChhhHHhhH
Q 003258 354 VVITGPNTGGKTASMKTL 371 (835)
Q Consensus 354 ~~I~GpNGsGKSTlLK~i 371 (835)
++|+|+.|+|||||++.+
T Consensus 3 i~~~G~~~~GKssl~~~l 20 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKL 20 (164)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 789999999999999998
No 442
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=85.92 E-value=0.34 Score=46.27 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l 38 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQF 38 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 443
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=85.91 E-value=0.34 Score=46.54 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 13 ki~v~G~~~~GKSsli~~l 31 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQY 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 444
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=85.89 E-value=0.34 Score=47.05 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l 45 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRF 45 (193)
T ss_dssp EEEEESSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999998
No 445
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.81 E-value=0.39 Score=49.02 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|.|+-||||||+.+.+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l 22 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLL 22 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 68999999999999999998
No 446
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=85.80 E-value=0.35 Score=45.83 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 16 ~~i~v~G~~~~GKSsli~~l 35 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQF 35 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 447
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=85.74 E-value=0.3 Score=48.78 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+|+.||||||+.+.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l 23 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRV 23 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 448
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=85.71 E-value=0.34 Score=46.43 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 12 ki~v~G~~~~GKSsli~~l 30 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQF 30 (186)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 449
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=85.60 E-value=0.4 Score=47.10 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l 43 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 450
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.55 E-value=0.38 Score=47.74 Aligned_cols=20 Identities=35% Similarity=0.694 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l 32 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLL 32 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 451
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=85.44 E-value=0.36 Score=46.59 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 9 ki~v~G~~~vGKSsli~~l 27 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVF 27 (184)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 452
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=85.43 E-value=0.37 Score=45.77 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 8 ki~v~G~~~~GKssl~~~l 26 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCF 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4799999999999999998
No 453
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=85.39 E-value=0.37 Score=46.14 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l 38 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQF 38 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999998
No 454
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=85.37 E-value=0.37 Score=46.54 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 23 ki~vvG~~~~GKSsli~~l 41 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQL 41 (190)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5789999999999999999
No 455
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=85.36 E-value=1.8 Score=47.12 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
.+++|+|+.|+|||||+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~ 100 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALG 100 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999983
No 456
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.32 E-value=0.4 Score=51.58 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
.+++|+||+|+|||||...+
T Consensus 11 ~~i~i~GptgsGKt~la~~L 30 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIEL 30 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHH
Confidence 68999999999999999988
No 457
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=85.07 E-value=0.39 Score=45.75 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 14 ki~v~G~~~~GKSsli~~l 32 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRF 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999998
No 458
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.05 E-value=0.39 Score=45.64 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 11 ~~i~v~G~~~~GKssli~~l 30 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRF 30 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 35799999999999999998
No 459
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=85.02 E-value=0.42 Score=47.56 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
..++|+|+.|+|||||++.+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l 50 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERT 50 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 68999999999999999988
No 460
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=84.99 E-value=7.6 Score=44.44 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
.+++|+|++|+||||++..++
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999884
No 461
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=84.93 E-value=0.39 Score=46.83 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 15 ~ki~v~G~~~~GKSsli~~l 34 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQF 34 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999998
No 462
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.85 E-value=0.42 Score=47.41 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l 46 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRF 46 (201)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999988
No 463
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=84.82 E-value=0.49 Score=48.43 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=21.0
Q ss_pred cCCceEEEEEcCCCCChhhHHhhH
Q 003258 348 ECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.+| .+++|.|+.||||||+.+.+
T Consensus 19 ~~~-~~i~~~G~~g~GKst~~~~l 41 (223)
T 3ld9_A 19 PGS-MFITFEGIDGSGKTTQSHLL 41 (223)
T ss_dssp CCC-EEEEEECSTTSSHHHHHHHH
T ss_pred CCC-eEEEEECCCCCCHHHHHHHH
Confidence 356 89999999999999999998
No 464
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=84.78 E-value=0.4 Score=45.78 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l 26 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQF 26 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHH
Confidence 35899999999999999998
No 465
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=84.72 E-value=0.41 Score=46.29 Aligned_cols=19 Identities=16% Similarity=0.329 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 18 ki~v~G~~~~GKSsli~~l 36 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRF 36 (196)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5899999999999999998
No 466
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=84.63 E-value=0.42 Score=45.62 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l 25 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISY 25 (186)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999988
No 467
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=84.60 E-value=0.42 Score=45.94 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 19 ~~i~v~G~~~~GKssl~~~l 38 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKF 38 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 56899999999999999999
No 468
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=84.56 E-value=0.42 Score=46.78 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l 28 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQY 28 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 35799999999999999998
No 469
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.39 E-value=0.53 Score=47.47 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=19.6
Q ss_pred CCceEEEEEcCCCCChhhHHhhH
Q 003258 349 CETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.| ..++|+||.|+|||||...+
T Consensus 33 ~g-~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 33 YG-LGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp TT-EEEEEECCCTTTTHHHHHHH
T ss_pred CC-EEEEEECCCCCCHHHHHHHH
Confidence 45 78999999999999998877
No 470
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=84.31 E-value=0.49 Score=48.04 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCChhhHHhhHH
Q 003258 352 RVVVITGPNTGGKTASMKTLG 372 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~iG 372 (835)
..++|+|+.||||||+.+.|+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999993
No 471
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=84.25 E-value=5.3 Score=41.50 Aligned_cols=20 Identities=15% Similarity=0.493 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.++|||||++.+
T Consensus 27 ~~i~vvG~~~~GKSSLln~l 46 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENF 46 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHH
Confidence 46899999999999999999
No 472
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.21 E-value=0.44 Score=46.23 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l 28 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRF 28 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 35899999999999999998
No 473
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=84.16 E-value=0.42 Score=46.76 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l 40 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVV 40 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999977
No 474
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=84.15 E-value=0.44 Score=46.37 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 25 ki~vvG~~~~GKSsli~~l 43 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRF 43 (192)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999998
No 475
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=84.05 E-value=0.45 Score=49.28 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.5
Q ss_pred cCCceEEEEEcCCCCChhhHHhhH
Q 003258 348 ECETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 348 ~~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
.++ .+++|.|+-||||||+.+.|
T Consensus 22 ~~~-~~I~ieG~~GsGKST~~~~L 44 (263)
T 1p5z_B 22 TRI-KKISIEGNIAAGKSTFVNIL 44 (263)
T ss_dssp -CC-EEEEEECSTTSSHHHHHTTT
T ss_pred cCc-eEEEEECCCCCCHHHHHHHH
Confidence 456 79999999999999999998
No 476
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=84.04 E-value=0.45 Score=46.78 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l 45 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQF 45 (200)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999998
No 477
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=83.99 E-value=0.5 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCChhhHHhhH
Q 003258 349 CETRVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 349 ~g~~~~~I~GpNGsGKSTlLK~i 371 (835)
+| .+++|.|+.||||||.++.+
T Consensus 4 ~g-~~i~~eG~~g~GKst~~~~l 25 (216)
T 3tmk_A 4 RG-KLILIEGLDRTGKTTQCNIL 25 (216)
T ss_dssp CC-CEEEEEECSSSSHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 56 79999999999999999998
No 478
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=83.99 E-value=0.46 Score=45.93 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 24 ki~vvG~~~~GKSsli~~l 42 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRY 42 (189)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 479
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=83.79 E-value=2.7 Score=33.31 Aligned_cols=34 Identities=29% Similarity=0.187 Sum_probs=26.7
Q ss_pred CCCCCCEEEEccc---CCceEEEEEeeCCCceEEEEEC
Q 003258 669 TPQFGEQVHVKSL---GDKLATVVEVPGDDDTVLVQYG 703 (835)
Q Consensus 669 ~~~~Gd~V~v~~~---~~~~g~V~~~~~~~~~~~V~~g 703 (835)
.+++||.|+|.+- |. .|+|.++..+++.+.|.+.
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~-~g~v~~v~~~k~~v~V~v~ 40 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADF-TGTVTEINPERGKVKVMVT 40 (58)
T ss_dssp SCCTTCEEEECSGGGTTC-EEEEEEEETTTTEEEEEEE
T ss_pred ccCCCCEEEEeecCCCCc-EEEEEEEcCCCCEEEEEEE
Confidence 4689999999764 34 6999999877777877664
No 480
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=83.72 E-value=0.48 Score=46.15 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l 46 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERF 46 (192)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999999
No 481
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=83.70 E-value=0.51 Score=47.54 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
+++|+||.||||+|..+.|
T Consensus 2 ~Iil~GpPGsGKgTqa~~L 20 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRL 20 (206)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999998
No 482
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=83.56 E-value=0.49 Score=45.89 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 23 ki~v~G~~~~GKSsli~~l 41 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQF 41 (191)
T ss_dssp EEEEESSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4789999999999999998
No 483
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=83.54 E-value=0.44 Score=46.15 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l 41 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKL 41 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 45899999999999999999
No 484
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=83.52 E-value=4.1 Score=50.78 Aligned_cols=114 Identities=15% Similarity=0.182 Sum_probs=58.6
Q ss_pred ceEEEEEcCCCCChhhHHhhHHh---hhhhcccc-eeecCCCCCCc-hHHHHHHH---HcCCc--ccccCCcccchHHH-
Q 003258 351 TRVVVITGPNTGGKTASMKTLGL---ASLMSKAG-LYLPAKNHPRL-PWFDLILA---DIGDH--QSLEQNLSTFSGHI- 419 (835)
Q Consensus 351 ~~~~~I~GpNGsGKSTlLK~iGl---i~~ma~~G-~~vP~~~~~~i-~~~d~i~~---~ig~~--~~~~~~lstfSgg~- 419 (835)
.++++|+||-|.|||||.+.+.- +.--...| +++..+..... .++..+.. .++.. ...+. .+......
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~-~~~ip~~le 228 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-SSNIKLRIH 228 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCC-CSSHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCccccccccc-ccCCCCCHH
Confidence 37999999999999999998832 11111122 34444432222 22233333 22210 00110 01111111
Q ss_pred ---HHHHHHH-HHcCCCcEEEEeCCCCCCCHHhHHHHHHHHHHHHhcCCcEEEEEecchhHH
Q 003258 420 ---SRIVDIL-ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS 477 (835)
Q Consensus 420 ---~rl~~~~-~la~~~~LlLLDEp~~glDp~~~~aL~~all~~l~~~~~~viitTH~~el~ 477 (835)
.++...+ ....++-||+||-.-. .. .++.+. .|+.||+||-+..+.
T Consensus 229 eL~e~Lr~lL~~l~~KRvLLVLDDVwd------~e-----qLe~f~-pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 229 SIQAELRRLLKSKPYENCLLVLLNVQN------AK-----AWNAFN-LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHHHHHHHHHHSTTSSCEEEEESCCC------HH-----HHHHHH-SSCCEEEECSCSHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCcCh------HH-----HHHhhC-CCeEEEEeccChHHH
Confidence 1333332 2356788999997654 12 222233 588999999987654
No 485
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=83.51 E-value=0.49 Score=45.66 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l 36 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQF 36 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 486
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=83.46 E-value=0.51 Score=44.95 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 10 ki~v~G~~~~GKssl~~~~ 28 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISY 28 (182)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999998
No 487
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=83.36 E-value=0.53 Score=47.02 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
..++|+|+.|+|||||++.+
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l 58 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKL 58 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 67899999999999999988
No 488
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=83.19 E-value=0.52 Score=45.41 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 16 ~~i~v~G~~~~GKssli~~l 35 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRF 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 489
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=83.14 E-value=0.52 Score=45.55 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l 40 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRF 40 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 490
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=83.11 E-value=0.52 Score=46.23 Aligned_cols=20 Identities=40% Similarity=0.429 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 25 ~ki~vvG~~~~GKSsli~~l 44 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQF 44 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHH
Confidence 46899999999999999998
No 491
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=83.04 E-value=0.53 Score=45.58 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l 42 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVI 42 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 45799999999999999998
No 492
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=83.02 E-value=0.53 Score=46.00 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 10 ki~v~G~~~~GKSsli~~l 28 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRY 28 (203)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999998
No 493
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=83.00 E-value=0.54 Score=45.68 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l 43 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAF 43 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 35799999999999999998
No 494
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=82.87 E-value=0.53 Score=46.18 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 10 ki~v~G~~~~GKSsli~~l 28 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRF 28 (206)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 495
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=82.86 E-value=0.54 Score=48.85 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=18.0
Q ss_pred EEEEEcCCCCChhhHHhhH
Q 003258 353 VVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 353 ~~~I~GpNGsGKSTlLK~i 371 (835)
.++|+|+.|+|||||++.+
T Consensus 3 kI~lvG~~n~GKSTL~n~L 21 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNAL 21 (256)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999999
No 496
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=82.83 E-value=0.54 Score=45.93 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l 49 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKL 49 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 497
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=82.83 E-value=0.58 Score=45.31 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
..++|+|+.|+|||||++.+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l 37 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQV 37 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 498
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.83 E-value=0.54 Score=45.79 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 29 ~ki~v~G~~~vGKSsli~~l 48 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRF 48 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45899999999999999998
No 499
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=82.80 E-value=0.49 Score=45.45 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 22 ~~i~v~G~~~~GKSsli~~l 41 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQF 41 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45799999999999999999
No 500
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.80 E-value=0.6 Score=45.82 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCChhhHHhhH
Q 003258 352 RVVVITGPNTGGKTASMKTL 371 (835)
Q Consensus 352 ~~~~I~GpNGsGKSTlLK~i 371 (835)
-.++|+|+.|+|||||++.+
T Consensus 21 ~~i~v~G~~~~GKSsli~~l 40 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRF 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
Done!