Query 003259
Match_columns 835
No_of_seqs 561 out of 3273
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 20:05:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 4.5E-87 9.8E-92 767.8 57.5 654 21-735 144-842 (1227)
2 KOG1028 Ca2+-dependent phospho 100.0 5.4E-27 1.2E-31 261.8 24.7 216 489-718 168-419 (421)
3 KOG1028 Ca2+-dependent phospho 99.9 8.5E-26 1.8E-30 252.2 12.6 214 590-821 152-393 (421)
4 COG5038 Ca2+-dependent lipid-b 99.9 1.2E-22 2.5E-27 236.5 30.2 433 253-731 654-1160(1227)
5 KOG2059 Ras GTPase-activating 99.9 1.1E-21 2.3E-26 217.2 15.1 230 489-731 6-275 (800)
6 cd04016 C2_Tollip C2 domain pr 99.9 2.6E-21 5.6E-26 179.1 15.0 112 619-731 2-121 (121)
7 cd08677 C2A_Synaptotagmin-13 C 99.8 1.2E-20 2.7E-25 171.6 13.6 109 592-717 1-118 (118)
8 cd08393 C2A_SLP-1_2 C2 domain 99.8 8.3E-20 1.8E-24 171.4 14.3 114 591-718 1-125 (125)
9 cd04029 C2A_SLP-4_5 C2 domain 99.8 1.4E-19 3.1E-24 169.6 15.3 114 591-718 1-125 (125)
10 cd08682 C2_Rab11-FIP_classI C2 99.8 7.7E-20 1.7E-24 172.1 13.5 110 621-730 1-126 (126)
11 cd08381 C2B_PI3K_class_II C2 d 99.8 1.5E-19 3.3E-24 168.7 14.4 111 591-718 1-122 (122)
12 cd08375 C2_Intersectin C2 doma 99.8 4.3E-19 9.3E-24 168.7 15.8 119 613-731 9-135 (136)
13 cd08387 C2A_Synaptotagmin-8 C2 99.8 8.5E-19 1.8E-23 164.6 15.6 114 591-718 2-123 (124)
14 cd04042 C2A_MCTP_PRT C2 domain 99.8 9.5E-19 2.1E-23 163.5 15.8 112 620-731 1-119 (121)
15 cd08392 C2A_SLP-3 C2 domain fi 99.8 6.8E-19 1.5E-23 165.4 14.7 114 591-718 1-128 (128)
16 cd08379 C2D_MCTP_PRT_plant C2 99.8 5.3E-19 1.2E-23 164.7 13.9 107 621-727 2-125 (126)
17 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.1E-18 2.3E-23 161.9 15.9 110 621-731 2-114 (116)
18 KOG2059 Ras GTPase-activating 99.8 6E-19 1.3E-23 195.5 15.9 232 296-602 6-277 (800)
19 cd04028 C2B_RIM1alpha C2 domai 99.8 9.3E-19 2E-23 166.9 14.9 119 586-720 12-139 (146)
20 cd08681 C2_fungal_Inn1p-like C 99.8 4.5E-19 9.9E-24 164.9 12.2 112 619-731 1-118 (118)
21 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.2E-18 2.7E-23 164.1 14.4 112 620-731 1-125 (127)
22 cd04016 C2_Tollip C2 domain pr 99.8 1.6E-18 3.5E-23 160.5 14.2 112 488-600 2-121 (121)
23 cd04036 C2_cPLA2 C2 domain pre 99.8 1.8E-18 4E-23 161.0 14.7 110 621-731 2-117 (119)
24 cd08385 C2A_Synaptotagmin-1-5- 99.8 3.1E-18 6.7E-23 160.8 15.6 114 591-718 2-123 (124)
25 cd08388 C2A_Synaptotagmin-4-11 99.8 4.1E-18 8.9E-23 160.5 16.4 115 591-719 2-128 (128)
26 cd04019 C2C_MCTP_PRT_plant C2 99.8 2.3E-18 5E-23 166.2 14.7 112 620-731 1-131 (150)
27 cd08391 C2A_C2C_Synaptotagmin_ 99.8 2.2E-18 4.7E-23 161.0 14.1 112 619-731 1-121 (121)
28 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 3.6E-18 7.8E-23 159.2 14.6 111 621-731 2-121 (121)
29 cd08389 C2A_Synaptotagmin-14_1 99.8 3.7E-18 7.9E-23 159.9 14.6 114 591-719 2-124 (124)
30 cd08680 C2_Kibra C2 domain fou 99.8 3E-18 6.6E-23 159.6 13.5 111 593-717 2-124 (124)
31 cd04024 C2A_Synaptotagmin-like 99.8 3.4E-18 7.4E-23 161.4 14.0 113 619-731 1-128 (128)
32 cd08386 C2A_Synaptotagmin-7 C2 99.8 5.8E-18 1.3E-22 159.1 15.4 114 591-718 2-124 (125)
33 cd08407 C2B_Synaptotagmin-13 C 99.8 4.4E-18 9.6E-23 161.2 14.3 100 591-704 1-112 (138)
34 cd04031 C2A_RIM1alpha C2 domai 99.8 5.3E-18 1.2E-22 159.4 14.3 113 591-718 2-125 (125)
35 cd04030 C2C_KIAA1228 C2 domain 99.8 8.1E-18 1.8E-22 158.6 15.6 114 591-718 2-127 (127)
36 cd08521 C2A_SLP C2 domain firs 99.8 7.9E-18 1.7E-22 157.8 14.6 112 592-717 1-123 (123)
37 cd08406 C2B_Synaptotagmin-12 C 99.8 6.4E-18 1.4E-22 160.2 14.0 99 592-704 2-110 (136)
38 cd08685 C2_RGS-like C2 domain 99.8 6.6E-18 1.4E-22 156.8 13.2 109 592-717 1-119 (119)
39 cd08395 C2C_Munc13 C2 domain t 99.8 7.3E-18 1.6E-22 155.7 12.2 99 620-719 1-112 (120)
40 KOG1030 Predicted Ca2+-depende 99.8 3.4E-18 7.3E-23 161.2 10.0 93 617-709 4-98 (168)
41 cd04017 C2D_Ferlin C2 domain f 99.8 1.7E-17 3.6E-22 158.1 14.9 112 620-731 2-131 (135)
42 cd08678 C2_C21orf25-like C2 do 99.7 2E-17 4.2E-22 155.7 14.9 109 621-731 1-119 (126)
43 cd08390 C2A_Synaptotagmin-15-1 99.7 3.2E-17 6.9E-22 153.6 15.8 113 592-718 1-122 (123)
44 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 2.1E-17 4.4E-22 154.9 14.4 110 620-729 1-122 (123)
45 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 2E-17 4.3E-22 157.3 14.2 112 620-731 1-132 (133)
46 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 1.9E-17 4.2E-22 162.0 14.5 127 591-719 1-138 (162)
47 cd08377 C2C_MCTP_PRT C2 domain 99.7 3.8E-17 8.2E-22 152.2 15.4 111 619-731 1-118 (119)
48 cd08400 C2_Ras_p21A1 C2 domain 99.7 4.9E-17 1.1E-21 152.9 15.7 109 619-731 4-122 (126)
49 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 3.7E-17 7.9E-22 152.6 14.5 110 621-730 2-120 (121)
50 cd08378 C2B_MCTP_PRT_plant C2 99.7 2.6E-17 5.7E-22 153.4 13.5 107 620-731 1-119 (121)
51 cd04015 C2_plant_PLD C2 domain 99.7 6.5E-17 1.4E-21 157.8 16.1 113 618-731 6-157 (158)
52 cd04014 C2_PKC_epsilon C2 doma 99.7 9.5E-17 2E-21 152.4 15.8 112 618-731 3-128 (132)
53 cd08682 C2_Rab11-FIP_classI C2 99.7 4.3E-17 9.4E-22 153.4 12.5 109 490-598 1-125 (126)
54 cd08379 C2D_MCTP_PRT_plant C2 99.7 8.6E-17 1.9E-21 149.9 13.8 100 489-588 1-111 (126)
55 cd08692 C2B_Tac2-N C2 domain s 99.7 9.5E-17 2.1E-21 149.8 13.9 99 592-704 1-109 (135)
56 cd08402 C2B_Synaptotagmin-1 C2 99.7 1E-16 2.3E-21 152.9 14.6 110 592-717 2-121 (136)
57 cd04044 C2A_Tricalbin-like C2 99.7 1.2E-16 2.6E-21 149.9 14.3 116 618-734 1-124 (124)
58 cd08410 C2B_Synaptotagmin-17 C 99.7 1.1E-16 2.5E-21 152.2 14.1 111 592-717 1-121 (135)
59 cd08408 C2B_Synaptotagmin-14_1 99.7 1.2E-16 2.7E-21 152.1 14.2 111 592-717 2-123 (138)
60 cd08376 C2B_MCTP_PRT C2 domain 99.7 2.1E-16 4.6E-21 146.4 14.8 112 489-601 1-115 (116)
61 cd04050 C2B_Synaptotagmin-like 99.7 8.7E-17 1.9E-21 146.2 11.8 98 620-720 1-103 (105)
62 cd04010 C2B_RasA3 C2 domain se 99.7 6.8E-17 1.5E-21 155.1 11.7 98 620-719 1-122 (148)
63 cd04042 C2A_MCTP_PRT C2 domain 99.7 2.2E-16 4.8E-21 147.5 14.5 114 489-602 1-121 (121)
64 cd08681 C2_fungal_Inn1p-like C 99.7 1.2E-16 2.6E-21 148.6 12.4 113 488-600 1-118 (118)
65 cd04018 C2C_Ferlin C2 domain t 99.7 1.1E-16 2.4E-21 153.9 12.2 104 621-724 2-130 (151)
66 cd08405 C2B_Synaptotagmin-7 C2 99.7 2.1E-16 4.4E-21 150.9 14.0 101 591-705 1-111 (136)
67 cd08391 C2A_C2C_Synaptotagmin_ 99.7 2E-16 4.4E-21 147.7 13.7 113 488-600 1-121 (121)
68 cd08688 C2_KIAA0528-like C2 do 99.7 1.1E-16 2.4E-21 146.8 11.7 99 621-719 1-109 (110)
69 cd08404 C2B_Synaptotagmin-4 C2 99.7 7.3E-17 1.6E-21 154.0 10.9 112 591-718 1-122 (136)
70 cd04026 C2_PKC_alpha_gamma C2 99.7 2.3E-16 5.1E-21 149.5 14.1 118 591-725 1-127 (131)
71 cd08403 C2B_Synaptotagmin-3-5- 99.7 2.9E-16 6.3E-21 149.4 14.4 110 592-717 1-120 (134)
72 cd08373 C2A_Ferlin C2 domain f 99.7 4.1E-16 8.8E-21 147.0 15.1 109 625-736 2-119 (127)
73 cd04046 C2_Calpain C2 domain p 99.7 4.5E-16 9.8E-21 146.4 15.3 112 617-731 1-121 (126)
74 cd08409 C2B_Synaptotagmin-15 C 99.7 8.9E-17 1.9E-21 153.2 10.6 111 592-717 2-122 (137)
75 cd04043 C2_Munc13_fungal C2 do 99.7 4.2E-16 9.1E-21 146.7 15.0 110 620-731 2-120 (126)
76 cd08382 C2_Smurf-like C2 domai 99.7 3E-16 6.4E-21 147.0 12.9 109 621-729 2-122 (123)
77 cd08375 C2_Intersectin C2 doma 99.7 6.4E-16 1.4E-20 147.0 15.0 113 488-600 15-135 (136)
78 cd04039 C2_PSD C2 domain prese 99.7 2.5E-16 5.4E-21 143.5 11.6 90 619-708 1-98 (108)
79 cd08384 C2B_Rabphilin_Doc2 C2 99.7 5E-16 1.1E-20 147.6 14.0 110 593-718 1-120 (133)
80 cd08690 C2_Freud-1 C2 domain f 99.7 9E-16 2E-20 147.5 15.3 116 622-737 5-142 (155)
81 cd04027 C2B_Munc13 C2 domain s 99.7 6.6E-16 1.4E-20 145.5 13.9 108 620-729 2-127 (127)
82 cd04024 C2A_Synaptotagmin-like 99.7 6E-16 1.3E-20 146.1 13.5 113 488-600 1-128 (128)
83 cd04041 C2A_fungal C2 domain f 99.7 2.6E-16 5.6E-21 144.6 10.5 97 619-718 1-107 (111)
84 cd08394 C2A_Munc13 C2 domain f 99.7 7.9E-16 1.7E-20 141.5 13.5 104 619-727 2-112 (127)
85 cd04009 C2B_Munc13-like C2 dom 99.7 4.6E-16 1E-20 147.8 12.3 103 591-707 2-118 (133)
86 cd04036 C2_cPLA2 C2 domain pre 99.7 8.4E-16 1.8E-20 143.1 13.8 111 490-600 2-117 (119)
87 cd04019 C2C_MCTP_PRT_plant C2 99.7 9.7E-16 2.1E-20 148.0 14.2 112 490-601 2-132 (150)
88 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 1E-15 2.2E-20 142.7 13.2 111 490-600 2-121 (121)
89 cd04022 C2A_MCTP_PRT_plant C2 99.7 8.8E-16 1.9E-20 144.7 13.0 112 490-601 2-126 (127)
90 cd04011 C2B_Ferlin C2 domain s 99.7 8.8E-16 1.9E-20 141.1 12.6 98 618-719 3-110 (111)
91 cd04038 C2_ArfGAP C2 domain pr 99.7 2.8E-15 6E-20 143.6 16.1 142 619-772 2-145 (145)
92 cd00276 C2B_Synaptotagmin C2 d 99.6 7.4E-16 1.6E-20 146.6 11.6 114 592-721 1-124 (134)
93 cd04015 C2_plant_PLD C2 domain 99.6 2.9E-15 6.2E-20 146.2 14.5 114 488-601 7-158 (158)
94 cd04049 C2_putative_Elicitor-r 99.6 1.6E-15 3.6E-20 142.2 12.0 102 619-720 1-109 (124)
95 cd08381 C2B_PI3K_class_II C2 d 99.6 3.2E-15 7E-20 139.5 13.7 97 489-586 14-121 (122)
96 cd04051 C2_SRC2_like C2 domain 99.6 1.3E-15 2.8E-20 143.2 11.1 108 620-727 1-125 (125)
97 cd04045 C2C_Tricalbin-like C2 99.6 3.5E-15 7.5E-20 138.9 13.8 107 619-726 1-110 (120)
98 cd08678 C2_C21orf25-like C2 do 99.6 3.1E-15 6.8E-20 140.7 13.5 111 490-602 1-121 (126)
99 cd04035 C2A_Rabphilin_Doc2 C2 99.6 5.6E-15 1.2E-19 138.4 15.1 111 591-716 1-122 (123)
100 KOG1030 Predicted Ca2+-depende 99.6 8.3E-16 1.8E-20 145.1 9.1 93 293-408 4-97 (168)
101 cd08676 C2A_Munc13-like C2 dom 99.6 2.1E-15 4.6E-20 145.2 12.0 100 613-717 22-153 (153)
102 cd08400 C2_Ras_p21A1 C2 domain 99.6 6.7E-15 1.5E-19 138.3 14.8 111 489-602 5-124 (126)
103 cd04050 C2B_Synaptotagmin-like 99.6 3.2E-15 7E-20 135.9 12.1 98 490-589 2-103 (105)
104 cd08387 C2A_Synaptotagmin-8 C2 99.6 6.1E-15 1.3E-19 138.4 14.0 100 488-587 16-123 (124)
105 cd08393 C2A_SLP-1_2 C2 domain 99.6 4.5E-15 9.8E-20 139.3 13.1 99 489-587 16-125 (125)
106 cd08378 C2B_MCTP_PRT_plant C2 99.6 4E-15 8.7E-20 138.7 12.6 107 490-600 2-119 (121)
107 cd04039 C2_PSD C2 domain prese 99.6 3.3E-15 7.1E-20 136.1 11.4 96 295-409 1-99 (108)
108 cd04052 C2B_Tricalbin-like C2 99.6 3.9E-15 8.4E-20 136.7 11.6 96 635-731 8-108 (111)
109 cd08675 C2B_RasGAP C2 domain s 99.6 3.8E-15 8.2E-20 141.9 11.6 99 621-720 1-121 (137)
110 cd04028 C2B_RIM1alpha C2 domai 99.6 1.3E-14 2.8E-19 138.5 15.2 101 489-589 30-139 (146)
111 cd08677 C2A_Synaptotagmin-13 C 99.6 6.5E-15 1.4E-19 134.2 12.4 96 488-586 14-118 (118)
112 cd04032 C2_Perforin C2 domain 99.6 5E-15 1.1E-19 138.3 11.9 93 614-707 23-119 (127)
113 cd04029 C2A_SLP-4_5 C2 domain 99.6 9.3E-15 2E-19 137.1 13.8 100 488-587 15-125 (125)
114 cd08377 C2C_MCTP_PRT C2 domain 99.6 1.4E-14 3.1E-19 134.8 14.6 111 488-600 1-118 (119)
115 cd08691 C2_NEDL1-like C2 domai 99.6 1.4E-14 3E-19 137.3 14.6 109 620-729 2-136 (137)
116 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 8.5E-15 1.8E-19 136.7 13.0 110 490-599 2-120 (121)
117 cd04014 C2_PKC_epsilon C2 doma 99.6 1.3E-14 2.9E-19 137.7 14.6 111 488-601 4-129 (132)
118 cd08395 C2C_Munc13 C2 domain t 99.6 8.4E-15 1.8E-19 135.4 12.8 98 490-588 2-112 (120)
119 cd04040 C2D_Tricalbin-like C2 99.6 1.1E-14 2.3E-19 134.8 13.2 99 621-719 1-103 (115)
120 cd04033 C2_NEDD4_NEDD4L C2 dom 99.6 8.4E-15 1.8E-19 139.2 12.2 113 489-601 1-133 (133)
121 cd08392 C2A_SLP-3 C2 domain fi 99.6 1.7E-14 3.6E-19 135.7 13.9 99 489-587 16-128 (128)
122 KOG0696 Serine/threonine prote 99.6 7.9E-16 1.7E-20 161.9 5.3 117 591-724 168-293 (683)
123 cd04025 C2B_RasA1_RasA4 C2 dom 99.6 1.5E-14 3.2E-19 135.5 13.5 99 490-588 2-103 (123)
124 cd08385 C2A_Synaptotagmin-1-5- 99.6 2.3E-14 5.1E-19 134.4 14.7 99 489-587 17-123 (124)
125 cd04021 C2_E3_ubiquitin_ligase 99.6 2.1E-14 4.5E-19 134.8 13.8 110 619-729 2-124 (125)
126 cd04031 C2A_RIM1alpha C2 domai 99.6 2.5E-14 5.4E-19 134.4 13.9 98 489-587 17-125 (125)
127 cd04044 C2A_Tricalbin-like C2 99.6 1.7E-14 3.7E-19 135.2 12.8 115 488-602 2-124 (124)
128 cd04017 C2D_Ferlin C2 domain f 99.6 3E-14 6.5E-19 135.7 14.5 115 489-603 2-134 (135)
129 cd04046 C2_Calpain C2 domain p 99.6 5.1E-14 1.1E-18 132.4 15.1 112 488-601 3-122 (126)
130 cd04010 C2B_RasA3 C2 domain se 99.6 2.1E-14 4.6E-19 137.9 12.2 98 490-589 2-123 (148)
131 cd04013 C2_SynGAP_like C2 doma 99.6 6.1E-14 1.3E-18 133.5 15.0 109 618-731 10-138 (146)
132 cd04037 C2E_Ferlin C2 domain f 99.6 2E-14 4.4E-19 134.7 11.5 111 620-731 1-118 (124)
133 cd08388 C2A_Synaptotagmin-4-11 99.6 8.3E-14 1.8E-18 131.2 15.2 99 489-587 17-127 (128)
134 cd08394 C2A_Munc13 C2 domain f 99.6 3.3E-14 7.1E-19 130.9 12.0 97 488-588 2-101 (127)
135 cd08389 C2A_Synaptotagmin-14_1 99.6 5E-14 1.1E-18 131.9 13.3 99 489-588 17-124 (124)
136 cd08685 C2_RGS-like C2 domain 99.5 2.6E-14 5.5E-19 132.7 11.1 98 488-586 12-119 (119)
137 cd04041 C2A_fungal C2 domain f 99.5 2.3E-14 4.9E-19 131.7 10.2 92 295-409 1-101 (111)
138 cd04027 C2B_Munc13 C2 domain s 99.5 5.6E-14 1.2E-18 132.3 12.9 108 489-598 2-127 (127)
139 cd08383 C2A_RasGAP C2 domain ( 99.5 9.7E-14 2.1E-18 128.7 14.3 105 621-731 2-117 (117)
140 cd08373 C2A_Ferlin C2 domain f 99.5 9.7E-14 2.1E-18 130.8 14.5 111 494-606 2-121 (127)
141 cd08686 C2_ABR C2 domain in th 99.5 7.9E-14 1.7E-18 126.7 13.2 94 621-719 1-109 (118)
142 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 7.5E-14 1.6E-18 136.7 14.2 103 486-588 25-138 (162)
143 cd08386 C2A_Synaptotagmin-7 C2 99.5 9.2E-14 2E-18 130.6 14.1 99 489-587 17-124 (125)
144 KOG1326 Membrane-associated pr 99.5 1.6E-14 3.5E-19 166.0 10.7 358 295-703 206-702 (1105)
145 cd04030 C2C_KIAA1228 C2 domain 99.5 9.4E-14 2E-18 130.9 14.0 100 488-587 16-127 (127)
146 cd04048 C2A_Copine C2 domain f 99.5 4.3E-14 9.2E-19 131.8 11.3 95 624-718 5-113 (120)
147 cd04043 C2_Munc13_fungal C2 do 99.5 1.3E-13 2.8E-18 129.7 14.6 111 489-601 2-121 (126)
148 cd08688 C2_KIAA0528-like C2 do 99.5 4.3E-14 9.4E-19 129.6 10.9 99 490-588 1-109 (110)
149 cd08680 C2_Kibra C2 domain fou 99.5 5.2E-14 1.1E-18 131.2 11.2 99 488-586 14-124 (124)
150 PLN03008 Phospholipase D delta 99.5 6.6E-14 1.4E-18 162.3 14.2 98 638-737 75-181 (868)
151 cd08382 C2_Smurf-like C2 domai 99.5 8.5E-14 1.8E-18 130.3 12.4 108 490-598 2-122 (123)
152 cd08521 C2A_SLP C2 domain firs 99.5 1.7E-13 3.8E-18 128.2 14.1 99 488-586 14-123 (123)
153 KOG1013 Synaptic vesicle prote 99.5 5.3E-15 1.1E-19 151.9 4.0 201 489-703 94-327 (362)
154 cd04038 C2_ArfGAP C2 domain pr 99.5 2.6E-13 5.5E-18 130.1 15.3 93 294-410 1-94 (145)
155 cd04018 C2C_Ferlin C2 domain t 99.5 8.3E-14 1.8E-18 134.0 11.4 104 490-593 2-130 (151)
156 cd08390 C2A_Synaptotagmin-15-1 99.5 2.1E-13 4.6E-18 127.7 13.9 100 489-588 15-123 (123)
157 cd04052 C2B_Tricalbin-like C2 99.5 9.7E-14 2.1E-18 127.5 11.2 100 504-603 8-111 (111)
158 cd04045 C2C_Tricalbin-like C2 99.5 2.1E-13 4.5E-18 127.0 12.9 107 488-595 1-110 (120)
159 cd04011 C2B_Ferlin C2 domain s 99.5 1.9E-13 4.2E-18 125.5 11.4 97 488-588 4-110 (111)
160 cd04049 C2_putative_Elicitor-r 99.5 4E-13 8.7E-18 126.0 13.2 102 488-589 1-109 (124)
161 cd04051 C2_SRC2_like C2 domain 99.5 1.8E-13 3.8E-18 128.6 10.7 107 489-595 1-124 (125)
162 cd04026 C2_PKC_alpha_gamma C2 99.5 3.6E-13 7.8E-18 127.6 12.8 105 489-594 14-127 (131)
163 cd04032 C2_Perforin C2 domain 99.5 3.4E-13 7.3E-18 126.0 11.3 90 293-406 26-118 (127)
164 cd04013 C2_SynGAP_like C2 doma 99.5 7.6E-13 1.6E-17 126.0 13.6 110 489-603 12-141 (146)
165 cd04040 C2D_Tricalbin-like C2 99.5 6.2E-13 1.4E-17 122.9 12.4 100 490-589 1-104 (115)
166 cd00275 C2_PLC_like C2 domain 99.5 9.4E-13 2E-17 124.2 13.5 109 619-731 2-127 (128)
167 PLN03200 cellulose synthase-in 99.4 2.1E-13 4.6E-18 172.2 11.2 114 615-731 1976-2099(2102)
168 cd08690 C2_Freud-1 C2 domain f 99.4 1.8E-12 3.8E-17 124.8 14.5 113 490-602 4-138 (155)
169 cd08383 C2A_RasGAP C2 domain ( 99.4 1.5E-12 3.3E-17 120.7 13.4 105 490-600 2-117 (117)
170 cd08675 C2B_RasGAP C2 domain s 99.4 6.5E-13 1.4E-17 126.6 10.9 100 490-590 1-122 (137)
171 cd08406 C2B_Synaptotagmin-12 C 99.4 5.3E-13 1.1E-17 126.6 10.2 97 489-587 16-122 (136)
172 cd08676 C2A_Munc13-like C2 dom 99.4 7.2E-13 1.6E-17 127.7 10.9 95 488-586 28-153 (153)
173 cd08407 C2B_Synaptotagmin-13 C 99.4 8.7E-13 1.9E-17 125.1 10.6 96 489-586 16-123 (138)
174 cd04047 C2B_Copine C2 domain s 99.4 1E-12 2.2E-17 120.5 10.7 85 623-708 4-101 (110)
175 cd08404 C2B_Synaptotagmin-4 C2 99.4 1.4E-12 3E-17 124.5 11.0 98 489-588 16-123 (136)
176 cd04009 C2B_Munc13-like C2 dom 99.4 2.7E-12 5.9E-17 121.9 12.9 88 489-576 17-118 (133)
177 PLN03008 Phospholipase D delta 99.4 1.7E-12 3.7E-17 150.7 13.6 99 507-605 75-181 (868)
178 cd04037 C2E_Ferlin C2 domain f 99.4 1.8E-12 3.8E-17 121.5 11.1 89 296-407 1-93 (124)
179 cd08691 C2_NEDL1-like C2 domai 99.4 4.1E-12 8.9E-17 120.5 13.3 108 489-598 2-136 (137)
180 cd08686 C2_ABR C2 domain in th 99.4 1.9E-12 4.1E-17 117.7 10.0 78 297-402 1-90 (118)
181 cd04021 C2_E3_ubiquitin_ligase 99.4 4.8E-12 1E-16 118.8 13.1 108 489-598 3-124 (125)
182 cd04035 C2A_Rabphilin_Doc2 C2 99.4 6.7E-12 1.4E-16 117.6 14.0 97 489-585 16-122 (123)
183 cd08405 C2B_Synaptotagmin-7 C2 99.4 1.7E-12 3.7E-17 123.8 9.9 98 489-588 16-123 (136)
184 cd00276 C2B_Synaptotagmin C2 d 99.4 2.2E-12 4.8E-17 122.7 10.3 100 489-590 15-124 (134)
185 cd08402 C2B_Synaptotagmin-1 C2 99.4 2.4E-12 5.1E-17 122.9 10.3 99 488-588 15-123 (136)
186 cd08384 C2B_Rabphilin_Doc2 C2 99.4 1.9E-12 4E-17 123.1 8.5 99 488-588 13-121 (133)
187 cd08409 C2B_Synaptotagmin-15 C 99.4 2.9E-12 6.3E-17 122.2 9.8 99 489-588 16-124 (137)
188 cd08410 C2B_Synaptotagmin-17 C 99.4 3E-12 6.4E-17 121.9 9.8 90 292-404 11-109 (135)
189 cd08403 C2B_Synaptotagmin-3-5- 99.3 3.8E-12 8.1E-17 121.1 10.2 99 488-588 14-122 (134)
190 KOG0696 Serine/threonine prote 99.3 5E-13 1.1E-17 141.1 4.4 104 489-593 181-293 (683)
191 cd08692 C2B_Tac2-N C2 domain s 99.3 8.5E-12 1.9E-16 116.7 11.7 98 488-586 14-121 (135)
192 cd08408 C2B_Synaptotagmin-14_1 99.3 3.3E-12 7.1E-17 121.8 8.8 93 290-405 10-112 (138)
193 cd04048 C2A_Copine C2 domain f 99.3 1.1E-11 2.5E-16 115.4 11.0 95 493-587 5-113 (120)
194 PF00168 C2: C2 domain; Inter 99.3 8.9E-12 1.9E-16 107.9 9.2 79 621-699 1-85 (85)
195 PLN03200 cellulose synthase-in 99.3 6.3E-12 1.4E-16 159.1 11.4 112 488-601 1980-2100(2102)
196 KOG1011 Neurotransmitter relea 99.3 4.6E-12 1E-16 138.7 8.2 120 618-739 294-431 (1283)
197 cd08374 C2F_Ferlin C2 domain s 99.3 2E-11 4.3E-16 114.2 10.2 90 621-710 2-126 (133)
198 cd00275 C2_PLC_like C2 domain 99.3 7.9E-11 1.7E-15 111.0 14.0 109 489-600 3-127 (128)
199 cd00030 C2 C2 domain. The C2 d 99.2 8.7E-11 1.9E-15 104.2 11.1 97 621-717 1-102 (102)
200 cd04047 C2B_Copine C2 domain s 99.2 7.2E-11 1.6E-15 108.2 10.2 86 300-409 5-102 (110)
201 KOG1011 Neurotransmitter relea 99.2 5.2E-11 1.1E-15 130.6 8.5 110 488-599 295-422 (1283)
202 KOG1326 Membrane-associated pr 99.2 1.2E-10 2.5E-15 134.8 11.5 250 488-739 613-1028(1105)
203 KOG1013 Synaptic vesicle prote 99.1 3.9E-11 8.5E-16 123.8 5.3 208 295-571 93-326 (362)
204 smart00239 C2 Protein kinase C 99.1 5.4E-10 1.2E-14 99.4 11.4 92 621-712 2-99 (101)
205 PF00168 C2: C2 domain; Inter 99.1 3.3E-10 7.1E-15 98.0 8.8 79 490-568 1-85 (85)
206 cd00030 C2 C2 domain. The C2 d 99.0 2.5E-09 5.3E-14 94.8 10.6 97 490-586 1-102 (102)
207 PLN02270 phospholipase D alpha 99.0 3.4E-09 7.3E-14 123.8 14.2 116 618-735 7-150 (808)
208 KOG1328 Synaptic vesicle prote 99.0 2.6E-10 5.7E-15 127.1 3.4 102 591-706 933-1048(1103)
209 smart00239 C2 Protein kinase C 98.9 6.7E-09 1.5E-13 92.3 10.6 90 490-579 2-97 (101)
210 PLN02270 phospholipase D alpha 98.9 1.1E-08 2.5E-13 119.4 13.5 118 488-605 8-152 (808)
211 PLN02223 phosphoinositide phos 98.9 2E-08 4.3E-13 113.1 13.6 100 617-719 407-519 (537)
212 KOG1327 Copine [Signal transdu 98.8 4.3E-08 9.4E-13 109.3 14.5 174 520-707 41-236 (529)
213 KOG1031 Predicted Ca2+-depende 98.8 1.4E-08 3E-13 110.8 9.8 114 619-732 3-136 (1169)
214 PLN02952 phosphoinositide phos 98.8 3.9E-08 8.4E-13 113.2 13.3 112 617-731 468-596 (599)
215 KOG0905 Phosphoinositide 3-kin 98.8 1E-08 2.2E-13 120.1 7.0 114 591-720 1512-1636(1639)
216 KOG1328 Synaptic vesicle prote 98.7 2E-09 4.3E-14 120.3 0.2 117 614-731 109-300 (1103)
217 cd08374 C2F_Ferlin C2 domain s 98.7 5.9E-08 1.3E-12 90.9 9.8 89 490-578 2-125 (133)
218 PLN02230 phosphoinositide phos 98.7 8.6E-08 1.9E-12 110.1 12.4 99 617-718 467-579 (598)
219 PF10296 DUF2404: Putative int 98.7 3.6E-08 7.7E-13 86.7 7.0 79 106-184 1-81 (91)
220 PLN02222 phosphoinositide phos 98.6 2E-07 4.4E-12 107.0 13.3 99 617-718 450-562 (581)
221 cd08689 C2_fungal_Pkc1p C2 dom 98.6 1.1E-07 2.3E-12 83.7 8.0 82 621-706 1-87 (109)
222 PLN02223 phosphoinositide phos 98.6 2.9E-07 6.3E-12 103.8 13.7 110 488-600 409-536 (537)
223 cd08689 C2_fungal_Pkc1p C2 dom 98.6 1.7E-07 3.8E-12 82.4 8.1 84 490-576 1-88 (109)
224 PLN02228 Phosphoinositide phos 98.6 3.8E-07 8.3E-12 104.5 13.0 111 618-731 430-560 (567)
225 KOG0169 Phosphoinositide-speci 98.6 2E-07 4.4E-12 106.9 10.4 97 620-719 617-726 (746)
226 PLN02952 phosphoinositide phos 98.5 1.2E-06 2.7E-11 100.9 14.4 98 488-588 470-581 (599)
227 KOG1264 Phospholipase C [Lipid 98.4 7.9E-07 1.7E-11 101.0 9.4 110 618-731 1064-1188(1267)
228 PLN02230 phosphoinositide phos 98.4 2.8E-06 6.2E-11 97.8 13.8 98 488-588 469-580 (598)
229 PLN02222 phosphoinositide phos 98.3 5.1E-06 1.1E-10 95.6 14.4 99 488-589 452-564 (581)
230 KOG0169 Phosphoinositide-speci 98.3 2.6E-06 5.6E-11 98.0 10.9 110 489-601 617-744 (746)
231 KOG1031 Predicted Ca2+-depende 98.3 2.6E-06 5.6E-11 93.5 9.2 112 488-599 3-134 (1169)
232 KOG1327 Copine [Signal transdu 98.3 6.6E-06 1.4E-10 92.2 12.5 180 348-576 41-236 (529)
233 PLN02228 Phosphoinositide phos 98.3 1E-05 2.2E-10 93.0 14.1 110 489-601 432-561 (567)
234 PLN02352 phospholipase D epsil 98.2 7.8E-06 1.7E-10 96.0 12.8 113 616-737 7-134 (758)
235 KOG1264 Phospholipase C [Lipid 98.2 1.1E-05 2.3E-10 92.1 11.5 116 489-608 1066-1196(1267)
236 cd08683 C2_C2cd3 C2 domain fou 98.2 2.9E-06 6.3E-11 76.9 5.6 97 621-717 1-143 (143)
237 PLN02352 phospholipase D epsil 98.0 4E-05 8.7E-10 90.1 12.8 113 488-606 10-135 (758)
238 KOG0905 Phosphoinositide 3-kin 98.0 9.5E-06 2.1E-10 96.0 6.7 102 488-589 1524-1636(1639)
239 PF12416 DUF3668: Cep120 prote 97.7 0.0043 9.2E-08 67.5 20.9 211 490-708 2-296 (340)
240 KOG2060 Rab3 effector RIM1 and 97.7 3.4E-05 7.4E-10 81.9 4.3 104 616-719 266-379 (405)
241 cd08683 C2_C2cd3 C2 domain fou 97.6 9E-05 2E-09 67.4 4.7 97 490-586 1-143 (143)
242 cd08684 C2A_Tac2-N C2 domain f 97.5 0.00012 2.5E-09 61.9 3.7 92 491-584 2-101 (103)
243 cd08684 C2A_Tac2-N C2 domain f 97.4 0.00013 2.9E-09 61.5 3.5 91 623-716 3-102 (103)
244 PLN02964 phosphatidylserine de 97.3 0.00032 6.9E-09 82.2 6.5 87 294-409 53-141 (644)
245 PLN02964 phosphatidylserine de 97.1 0.00066 1.4E-08 79.6 6.0 87 616-709 51-141 (644)
246 KOG3837 Uncharacterized conser 97.1 0.00055 1.2E-08 73.4 4.5 118 617-734 365-505 (523)
247 PF12416 DUF3668: Cep120 prote 96.6 0.023 4.9E-07 62.0 12.4 108 621-731 2-131 (340)
248 KOG3837 Uncharacterized conser 96.5 0.002 4.4E-08 69.2 3.7 113 489-601 368-503 (523)
249 KOG2060 Rab3 effector RIM1 and 96.5 0.0019 4.2E-08 68.9 3.1 102 488-589 269-380 (405)
250 PF15627 CEP76-C2: CEP76 C2 do 95.6 0.14 3E-06 49.3 10.8 119 616-735 6-152 (156)
251 cd08693 C2_PI3K_class_I_beta_d 95.0 0.14 2.9E-06 50.8 9.4 85 619-705 8-120 (173)
252 PF15627 CEP76-C2: CEP76 C2 do 94.7 0.29 6.2E-06 47.1 10.4 91 488-578 9-119 (156)
253 cd08398 C2_PI3K_class_I_alpha 94.7 0.19 4.1E-06 48.9 9.3 83 619-705 8-106 (158)
254 cd08397 C2_PI3K_class_III C2 d 94.3 0.15 3.3E-06 49.7 7.6 83 638-731 28-122 (159)
255 cd08380 C2_PI3K_like C2 domain 94.2 0.23 5E-06 48.4 8.8 86 619-705 8-107 (156)
256 PF10358 NT-C2: N-terminal C2 94.2 1.4 3E-05 42.0 14.1 111 617-731 5-134 (143)
257 PF10358 NT-C2: N-terminal C2 94.2 1.3 2.9E-05 42.1 13.9 113 489-605 8-139 (143)
258 KOG1265 Phospholipase C [Lipid 93.9 0.1 2.2E-06 61.5 6.4 87 615-709 699-798 (1189)
259 cd04012 C2A_PI3K_class_II C2 d 93.5 0.27 5.8E-06 48.7 7.9 88 618-705 7-119 (171)
260 KOG1265 Phospholipase C [Lipid 93.0 0.17 3.7E-06 59.7 6.2 92 487-588 702-805 (1189)
261 cd08693 C2_PI3K_class_I_beta_d 92.8 0.69 1.5E-05 45.8 9.6 84 489-574 9-120 (173)
262 cd08398 C2_PI3K_class_I_alpha 92.7 0.81 1.8E-05 44.5 9.6 98 489-600 9-121 (158)
263 cd08399 C2_PI3K_class_I_gamma 91.4 1.1 2.5E-05 44.3 9.0 67 620-687 11-88 (178)
264 cd08687 C2_PKN-like C2 domain 90.7 1.9 4.1E-05 37.3 8.4 83 509-600 9-92 (98)
265 cd08380 C2_PI3K_like C2 domain 90.4 1.6 3.5E-05 42.4 9.2 85 489-574 9-107 (156)
266 cd08397 C2_PI3K_class_III C2 d 88.7 1.8 3.8E-05 42.3 7.9 85 506-601 27-123 (159)
267 PF00792 PI3K_C2: Phosphoinosi 88.4 1.4 3.1E-05 42.0 7.0 65 654-729 23-98 (142)
268 smart00142 PI3K_C2 Phosphoinos 87.5 2.8 6E-05 37.4 7.8 68 621-688 13-92 (100)
269 cd08687 C2_PKN-like C2 domain 87.3 4.1 8.9E-05 35.3 8.1 83 639-731 8-92 (98)
270 cd08399 C2_PI3K_class_I_gamma 86.8 4 8.6E-05 40.5 9.1 101 489-601 11-138 (178)
271 KOG1452 Predicted Rho GTPase-a 86.4 1.2 2.5E-05 47.0 5.3 115 616-731 48-166 (442)
272 cd04012 C2A_PI3K_class_II C2 d 85.9 3.5 7.7E-05 40.7 8.4 101 489-600 9-134 (171)
273 PF00792 PI3K_C2: Phosphoinosi 82.8 12 0.00026 35.7 10.3 64 511-574 4-85 (142)
274 cd08695 C2_Dock-B C2 domains f 82.6 11 0.00023 37.9 10.0 52 521-572 54-112 (189)
275 KOG1452 Predicted Rho GTPase-a 82.0 3.1 6.8E-05 43.9 6.2 112 488-601 51-167 (442)
276 PF11618 DUF3250: Protein of u 82.0 6.7 0.00014 35.5 7.6 90 643-734 2-107 (107)
277 cd08694 C2_Dock-A C2 domains f 80.8 13 0.00029 37.3 9.9 53 520-572 53-114 (196)
278 PF15625 CC2D2AN-C2: CC2D2A N- 79.8 6.1 0.00013 38.9 7.3 68 508-575 36-107 (168)
279 PF14429 DOCK-C2: C2 domain in 75.9 6 0.00013 39.6 6.1 55 350-404 61-120 (184)
280 cd08694 C2_Dock-A C2 domains f 74.9 6.8 0.00015 39.3 5.9 54 349-402 54-113 (196)
281 smart00142 PI3K_C2 Phosphoinos 74.5 16 0.00035 32.5 7.8 69 490-558 13-92 (100)
282 cd08695 C2_Dock-B C2 domains f 74.4 6.8 0.00015 39.2 5.8 53 350-402 55-111 (189)
283 PF11618 DUF3250: Protein of u 72.6 26 0.00057 31.7 8.7 67 512-578 2-77 (107)
284 PF14429 DOCK-C2: C2 domain in 71.7 12 0.00027 37.3 7.2 54 651-704 59-120 (184)
285 PTZ00447 apical membrane antig 69.8 46 0.00099 36.0 10.8 105 489-598 59-170 (508)
286 KOG0694 Serine/threonine prote 67.2 7.2 0.00016 45.9 4.8 167 507-688 26-196 (694)
287 PF15625 CC2D2AN-C2: CC2D2A N- 65.6 25 0.00053 34.6 7.7 65 640-705 37-106 (168)
288 PF07069 PRRSV_2b: Porcine rep 65.5 11 0.00024 29.6 4.0 31 39-69 26-58 (73)
289 PF06219 DUF1005: Protein of u 59.8 1.1E+02 0.0023 34.4 11.6 127 639-766 35-201 (460)
290 cd08679 C2_DOCK180_related C2 54.7 24 0.00051 35.1 5.5 52 352-403 56-114 (178)
291 cd08679 C2_DOCK180_related C2 49.6 41 0.00088 33.4 6.2 52 652-704 54-115 (178)
292 cd08697 C2_Dock-D C2 domains f 49.3 43 0.00094 33.5 6.2 56 349-404 57-123 (185)
293 cd08696 C2_Dock-C C2 domains f 47.9 56 0.0012 32.5 6.7 54 651-704 54-118 (179)
294 KOG3532 Predicted protein kina 46.0 1.2E+02 0.0027 35.8 9.8 161 138-309 143-343 (1051)
295 cd08696 C2_Dock-C C2 domains f 45.2 52 0.0011 32.7 6.1 55 349-403 55-117 (179)
296 COG3887 Predicted signaling pr 44.6 64 0.0014 37.7 7.3 52 96-154 91-142 (655)
297 PF13748 ABC_membrane_3: ABC t 44.1 72 0.0016 33.1 7.0 38 18-55 106-143 (237)
298 cd08697 C2_Dock-D C2 domains f 43.6 81 0.0018 31.6 7.2 54 651-704 56-123 (185)
299 KOG4269 Rac GTPase-activating 43.6 20 0.00043 43.4 3.2 75 285-387 749-829 (1112)
300 KOG1329 Phospholipase D1 [Lipi 40.8 19 0.00041 43.8 2.6 94 638-731 136-239 (887)
301 KOG2419 Phosphatidylserine dec 39.8 5.4 0.00012 46.0 -1.9 147 489-672 281-443 (975)
302 PTZ00447 apical membrane antig 37.7 2.1E+02 0.0046 31.1 9.4 108 616-729 55-170 (508)
303 PF06219 DUF1005: Protein of u 37.1 6.6E+02 0.014 28.4 13.3 81 509-589 36-148 (460)
304 KOG0694 Serine/threonine prote 33.3 11 0.00024 44.4 -0.8 91 639-731 27-120 (694)
305 KOG1329 Phospholipase D1 [Lipi 31.8 34 0.00073 41.8 2.7 97 507-603 136-242 (887)
306 PF10409 PTEN_C2: C2 domain of 30.7 3.2E+02 0.007 25.3 8.9 87 619-706 4-98 (134)
307 PF07162 B9-C2: Ciliary basal 30.3 4.3E+02 0.0093 25.8 9.9 74 624-703 7-102 (168)
308 PF10409 PTEN_C2: C2 domain of 25.1 5.5E+02 0.012 23.7 10.8 87 489-575 5-98 (134)
309 KOG2419 Phosphatidylserine dec 23.6 20 0.00044 41.6 -0.9 55 619-674 280-338 (975)
310 cd05137 RasGAP_CLA2_BUD2 CLA2/ 21.9 1.1E+02 0.0024 34.5 4.5 37 694-731 1-43 (395)
311 PF14316 DUF4381: Domain of un 20.3 2.8E+02 0.0062 26.4 6.4 16 97-112 65-80 (146)
312 PF08383 Maf_N: Maf N-terminal 20.2 55 0.0012 23.0 1.0 23 2-24 10-32 (35)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=4.5e-87 Score=767.81 Aligned_cols=654 Identities=21% Similarity=0.281 Sum_probs=534.4
Q ss_pred HHHHHHhhhcc-CCchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHhhcccCCCCCC
Q 003259 21 VEFWKNLLEEK-PLLPFVIPLVLLLWVFERWLFSFSNWVPLAIAVWATVQYGQYQHRIHVEELNKKWNQIILKTSPITPL 99 (835)
Q Consensus 21 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~w~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 99 (835)
...+..|+.+| |++++++++++++|++++++||++ -+++++++|+.+|...++| .++++++..+++....+...++
T Consensus 144 ~y~~~~~y~~w~qs~~i~l~~~v~Swifg~~~fs~~-slffii~~~~~vY~~~~~r--v~rnird~v~~~~~~ek~~nd~ 220 (1227)
T COG5038 144 NYILKKFYGDWYQSVAIVLIGSVASWIFGYLGFSFA-SLFFIILVTMYVYRTCIKR--VRRNIRDLVQQELSEEKLENDY 220 (1227)
T ss_pred hhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhcch
Confidence 45667778888 799999999999999999999987 3334445554444446776 6777777777888888889999
Q ss_pred cchHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHhhcCCcccccEEEEEEecCCCCCccceeEEEeCCCCCeEEEEEEEE
Q 003259 100 EHCEWLNKLLMEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFD 179 (835)
Q Consensus 100 E~~eWlN~~l~~~W~~~~~~~~~~~i~~~v~~~l~~~~P~~i~~i~~~~f~LG~~pp~i~~ir~~~~~~~d~~~~d~~~~ 179 (835)
||+||||+||++|||++ ||.+|+.|.+++|+.|++..|+||++++|++||||++||||.+||+||++++|.+.|||+++
T Consensus 221 ESveWLNtfL~KfW~i~-eP~iSqqV~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~s 299 (1227)
T COG5038 221 ESVEWLNTFLQKFWPII-EPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFS 299 (1227)
T ss_pred hHHHHHHHHHHhheecc-ChHHHHHHHHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeec
Confidence 99999999999999955 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCchhhhhh--------------hhhcCCcce-eeEEEEEEEEEEEEEEEe-----EeeeccEEEEEeccCCeEEEEe
Q 003259 180 WDANDISILLL--------------AKLAKPLLG-TAKIVINSLHIKGDLLVM-----PILEGKAVLYSFVSIPDVRIGV 239 (835)
Q Consensus 180 ~~~~~~~~~l~--------------~~~~~~~~g-~~~i~v~~~~~~g~~Ri~-----p~~~~~~v~~sf~~~P~vd~~~ 239 (835)
|+|+|++++.+ ++.|+.+.. ++||.|+|+.|+|++|++ ++|++++|++||||.|+|||.+
T Consensus 300 ftP~d~sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~L~~~~PfiktV~~~Lle~Pe~df~l 379 (1227)
T COG5038 300 FTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVELMSKYPFIKTVSFQLLEVPEFDFIL 379 (1227)
T ss_pred cCccchhhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEEecCCCcceeEEEEEEecCcceeEEE
Confidence 99999888733 344544443 999999999999999997 6788999999999999999999
Q ss_pred eecCCCCCcCCCCCCccHHHHHHHHHHHHhhcceecCceEEEecCccccc-ccccccEEEEEEEecCCCCCCCCCCCCcc
Q 003259 240 AFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLR-KKAVGGIVYVRVISASKLSRSSLRGSPSR 318 (835)
Q Consensus 240 ~~~~~~~~~~~i~~iPgl~~~i~~~i~~~l~~~~v~P~~~~~~l~~~~~~-~~~~~GvL~V~V~~A~~L~~~~~~g~~~~ 318 (835)
+|.+++.+++|||+||||++||+++|+.+|++||++|++++|+|+++... ...++|||.|+|.+|++|+..+..
T Consensus 380 ~Plg~~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~----- 454 (1227)
T COG5038 380 VPLGGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDST----- 454 (1227)
T ss_pred EEcCCCccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCccccccc-----
Confidence 99999899999999999999999999999999999999999999986554 556889999999999999988721
Q ss_pred cccccCCCCccccccCCCCcCeEEEEEec--ceeeeeccCCCCCCcccceeEEEEEcCCceEEEEEEEeCCCCCCcceeE
Q 003259 319 RQQNYSADSSLEEHYEDKDLTTFVEIELE--ELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLT 396 (835)
Q Consensus 319 ~~~~~~~dpy~~~~~~~~~~dpyv~v~~g--~~~~t~~i~~~~nP~W~etf~~~v~~~~~~L~~~v~d~~~~~~kdd~LG 396 (835)
. ++.+|||+++... ...||++++++.||+||||||+++++.+++|.++|||++. ..+|+.+|
T Consensus 455 --i-------------~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~-~~sd~vvG 518 (1227)
T COG5038 455 --I-------------NGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS-FKSDKVVG 518 (1227)
T ss_pred --c-------------cCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc-cCCcceee
Confidence 0 1224778888763 3468999999999999999999999999999999999987 68899999
Q ss_pred EEEEecccccCCCcceeeeCCCCccccccccccCceeeeEeecCCCCcceEEEEEEEeecccCCCCcccCccccCCCccc
Q 003259 397 SCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSL 476 (835)
Q Consensus 397 ~~~i~L~~L~~~~~~~w~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~l~~~l~l~~~~~~d~~~~~~~~~~~~~~~~ 476 (835)
+..++|..|++++... ++..+.. ...++.|+|.+++.+-|...+.... ....
T Consensus 519 ~~~l~L~~L~~~~~~~-----------------ne~~e~~--~~~k~vGrL~yDl~ffp~~e~k~~~---------~~s~ 570 (1227)
T COG5038 519 STQLDLALLHQNPVKK-----------------NELYEFL--RNTKNVGRLTYDLRFFPVIEDKKEL---------KGSV 570 (1227)
T ss_pred eEEechHHhhhccccc-----------------cceeeee--ccCccceEEEEeeeeecccCCcccc---------cccc
Confidence 9999999999875320 1111111 1223569999988665422211110 0001
Q ss_pred cCCCCccCCCCcEEEEEEEEeecCCCCCCCCCCCcEEEEEE-CCeEeecccc-CCCCCccceEEEEEeeCC-ceeEEEEE
Q 003259 477 SGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-GKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKC 553 (835)
Q Consensus 477 ~~~p~~~~~~g~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l-g~~~~kT~~~-~t~nP~Wne~f~f~v~~~-~~~L~i~V 553 (835)
+|.....+| ++.+++.++++|.... ......++++++ +++++.|+.+ .+.+|.||+.++..+.+. ...+.+.+
T Consensus 571 --e~~ed~n~G-I~k~tl~~~~~l~~~~-~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~ 646 (1227)
T COG5038 571 --EPLEDSNTG-ILKVTLREVKALDELS-SKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVT 646 (1227)
T ss_pred --CCcccCCcc-eeEEEeeccccccCcc-ccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEe
Confidence 122223345 9999999999996432 223334488988 5678899999 999999999999988775 77888999
Q ss_pred EEeccCCCceEEEEEEeccccccCC-eeeeEEecccCCCceEEEEEEEeecCCCCCCCCCC-CCCcceEEEEEEEEeecC
Q 003259 554 YNEEIFGDENMGSARVNLEGLVEGS-VRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQN-IGSGNGWIELVIVEARDL 631 (835)
Q Consensus 554 ~d~d~~~d~~IG~~~i~L~~l~~~~-~~~~w~~L~~~~~G~I~l~l~~~~~~~~~~~~~~~-~~~~~g~L~v~v~~a~~L 631 (835)
+|.. ..+.||+...+|.+++... ....||++. .++|+|.++..|.|+....++.... +..+.|.++|+|..|.+|
T Consensus 647 ~d~~--~g~~i~~~~~~l~~li~~t~dt~~~f~~~-~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl 723 (1227)
T COG5038 647 FDVQ--SGKVIATEGSTLPDLIDRTLDTFLVFPLR-NPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDL 723 (1227)
T ss_pred cccc--cCceeccccccchHhhhccccceEEEEcC-CCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcc
Confidence 8876 4688999999999988665 556899998 4689999999999998877655443 778999999999999999
Q ss_pred CcCCcCCCCCCEEEEEECC-eEeeeeeecCCCCCeeeeEEEeecC--CCcEEEEEEECCCCCCCCeEEEEEEEccccCCC
Q 003259 632 VAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN 708 (835)
Q Consensus 632 ~~~d~~g~~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~v~--~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~ 708 (835)
......|.+|||++|.+++ .++||-....|+||+|||..+.++. .+.+.++++|++..+.|..+|++.++.+++...
T Consensus 724 ~n~i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k 803 (1227)
T COG5038 724 RNEIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTLECMDYEESGDDRNLGEVNINVSNVSKK 803 (1227)
T ss_pred cccccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCccEEeeeeecchhccccceeceeeeeeeeeeec
Confidence 9888999999999999987 5789999999999999999999984 677999999999999999999999999987542
Q ss_pred Ccee----------eEEecC--C-CCCcEEEEEEEEEecC
Q 003259 709 QMAD----------KWIPLQ--G-VRKGEIHVLITRKVPE 735 (835)
Q Consensus 709 ~~~~----------~w~~L~--~-~~~G~i~l~l~~~~p~ 735 (835)
.... .--+|. + ..+|++.+.+.| .|.
T Consensus 804 ~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f-~p~ 842 (1227)
T COG5038 804 DEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRF-YPA 842 (1227)
T ss_pred CCCcceEEeecCcccccccccccCCcceeEEEEEEE-Eee
Confidence 1111 111111 1 346999999999 444
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.4e-27 Score=261.82 Aligned_cols=216 Identities=32% Similarity=0.489 Sum_probs=189.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeecccc-CCCCCccceEEEEEeeC---CceeEEEEEEEeccC-C
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-G 560 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~l---g~~~~kT~~~-~t~nP~Wne~f~f~v~~---~~~~L~i~V~d~d~~-~ 560 (835)
.|.|+|.+|++|+..+..|.+||||++++ .+.+.+|++. +++||.|||+|.|.+.. ....|.+.|||.|++ +
T Consensus 168 ~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr 247 (421)
T KOG1028|consen 168 LLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSR 247 (421)
T ss_pred EEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCccc
Confidence 79999999999999997788999999999 3478999999 99999999999999554 377999999999999 9
Q ss_pred CceEEEEEEeccccccCCeeeeEEecccC------CCceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcC
Q 003259 561 DENMGSARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAA 634 (835)
Q Consensus 561 d~~IG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~ 634 (835)
+++||++.++|..+........|.++... ..|+|.++++|. +..|.|+|.|++|++|...
T Consensus 248 ~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~--------------p~~g~ltv~v~kar~L~~~ 313 (421)
T KOG1028|consen 248 HDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYL--------------PTAGRLTVVVIKARNLKSM 313 (421)
T ss_pred ccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEee--------------cCCCeEEEEEEEecCCCcc
Confidence 99999999999998877666789998653 137999999999 6789999999999999999
Q ss_pred CcCCCCCCEEEEEEC--C---eEeeeeeecCCCCCeeeeEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEccc
Q 003259 635 DLRGTSDPYVKVQYG--D---LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQR 704 (835)
Q Consensus 635 d~~g~~DPyv~v~~~--~---~~~kT~v~~~t~nP~wne~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~ 704 (835)
+..+.+||||++++- . .+++|.+.++++||+|||+|.|.++ +..|.|+|||+|.+++.++||++.+....
T Consensus 314 ~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 314 DVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred cCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 999999999999982 2 4779999999999999999999875 56899999999999999999999998764
Q ss_pred c------------CCCCceeeEEecC
Q 003259 705 L------------PPNQMADKWIPLQ 718 (835)
Q Consensus 705 l------------~~~~~~~~w~~L~ 718 (835)
- .++.+..+|+.|.
T Consensus 394 ~~~~~~hW~~m~~~p~~pv~~wh~l~ 419 (421)
T KOG1028|consen 394 TGEEVRHWQEMLNSPRKPVAQWHSLR 419 (421)
T ss_pred CchHHHHHHHHHhCccCceeeeEecc
Confidence 1 2345667777664
No 3
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.5e-26 Score=252.25 Aligned_cols=214 Identities=23% Similarity=0.287 Sum_probs=187.1
Q ss_pred CCceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECC---eEeeeeeecCCCCCee
Q 003259 590 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQW 666 (835)
Q Consensus 590 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~w 666 (835)
..|+|.+++.|. .....|.|+|++|++|+..|..|.+||||++++.. .+.+|+++++|+||+|
T Consensus 152 ~~G~l~fsl~Yd--------------~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~f 217 (421)
T KOG1028|consen 152 AVGNLQFSLQYD--------------FELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVF 217 (421)
T ss_pred eeeeEEEEEEec--------------ccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCcc
Confidence 369999999987 78899999999999999999888999999999965 5789999999999999
Q ss_pred eeEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEecCCC------CCcEEEEEEEEEecC
Q 003259 667 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV------RKGEIHVLITRKVPE 735 (835)
Q Consensus 667 ne~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~l~~~~p~ 735 (835)
||+|.|.+. ...|.+.|||+|+|+++++||++.++|..+........|.+|... ..|||+++++| +|+
T Consensus 218 nEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y-~p~ 296 (421)
T KOG1028|consen 218 NETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCY-LPT 296 (421)
T ss_pred ccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEe-ecC
Confidence 999999964 689999999999999999999999999999877778899999631 23799999999 888
Q ss_pred Cccc----------ccCCCC---CCcceeEEccccchhheeeeccccCCCch-hHHHHhhhcCccchhhHHHHHHHHHHH
Q 003259 736 LDKR----------TSIDSD---SSSTRAHKISGQMKQMMVKFQSLIDDDNL-EELSTALSELETLEDSQEEYMVQLETE 801 (835)
Q Consensus 736 ~~~~----------~~~~~~---~p~~k~~~~~~~~r~~l~k~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (835)
++++ ..++.+ |||+|+++++++.+ ++|++|+++++++ |+|||+|.|.++.++++++.++....+
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~--~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d 374 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKR--LSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWD 374 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCce--eeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEE
Confidence 7666 333333 79999999999977 9999999999999 999999999999999999887733333
Q ss_pred HHHhhhhhHHhhchhccCCC
Q 003259 802 QMLLLNKIKELGQEIINSSP 821 (835)
Q Consensus 802 ~~~~~~k~~~lg~~~~~~~~ 821 (835)
.+.+++++.||+..+|..+
T Consensus 375 -~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 375 -HDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred -cccccccceeeEEEecCCC
Confidence 3578889999999999876
No 4
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=236.46 Aligned_cols=433 Identities=16% Similarity=0.209 Sum_probs=292.7
Q ss_pred CCccHHHHHHHHHHHHhhcceecCce---EEEec----Ccccccc--------cccccEEEEEEEecCCCCCCCCCCCCc
Q 003259 253 ELPGVSNWLARLINETLVKTLVEPRR---RCYSL----PAVDLRK--------KAVGGIVYVRVISASKLSRSSLRGSPS 317 (835)
Q Consensus 253 ~iPgl~~~i~~~i~~~l~~~~v~P~~---~~~~l----~~~~~~~--------~~~~GvL~V~V~~A~~L~~~~~~g~~~ 317 (835)
.|+...+-+..+|...+...++.|.+ -.|.+ -++++.. ..++|+++|.|..|.+|......|
T Consensus 654 ~i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~--- 730 (1227)
T COG5038 654 VIATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGG--- 730 (1227)
T ss_pred eeccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCc---
Confidence 45777778889999999999998887 22323 1333311 125799999999999998555444
Q ss_pred ccccccCCCCccccccCCCCcCeEEEEEecce--eeeeccCCCCCCcccceeEEEEEcCCceEEEEEEEeCCCCCCccee
Q 003259 318 RRQQNYSADSSLEEHYEDKDLTTFVEIELEEL--TRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYL 395 (835)
Q Consensus 318 ~~~~~~~~dpy~~~~~~~~~~dpyv~v~~g~~--~~t~~i~~~~nP~W~etf~~~v~~~~~~L~~~v~d~~~~~~kdd~L 395 (835)
++|||+.|.++.. .||-....|.||.|||..|..+.+..+.+.++++|+.. .+.|..|
T Consensus 731 -------------------~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r~~l~~~~~~~-sgddr~l 790 (1227)
T COG5038 731 -------------------KSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTLECMDYEE-SGDDRNL 790 (1227)
T ss_pred -------------------ccccceEEEecceeEEEEecccCccccceeeeEEEEecCCccEEeeeeecchh-cccccee
Confidence 3499999999854 44555679999999999999999999999999999997 5778899
Q ss_pred EEEEEecccccCCCcceeeeCCCCccccccccccCc--eeeeEeecCCCCcceEEEEEEEeecccC----C---------
Q 003259 396 TSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGD--EVEMTVPFEGVNSGELTVRLVLKEWQFS----D--------- 460 (835)
Q Consensus 396 G~~~i~L~~L~~~~~~~w~v~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~G~l~~~l~l~~~~~~----d--------- 460 (835)
|++.++++++..... ++.... ...|. ...+..+ ..+.+|.+++...+-+.... +
T Consensus 791 g~~~i~vsn~~~k~~-------~s~~~~---~i~g~~~t~~l~~~-~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~ 859 (1227)
T COG5038 791 GEVNINVSNVSKKDE-------DSALME---TIDGAEETGKLSLT-GKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSS 859 (1227)
T ss_pred ceeeeeeeeeeecCC-------CcceEE---eecCcccccccccc-cCCcceeEEEEEEEEeecccCChHHhcchhhhhh
Confidence 999999999876211 111000 00010 0011111 11234666665433321100 0
Q ss_pred ----------CCcc----cCccccC-----------C----CccccCCCCccCCCCcEEEEEEEEeecCCCCCCCCCCCc
Q 003259 461 ----------GSHS----LNNFHSG-----------S----QQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDP 511 (835)
Q Consensus 461 ----------~~~~----~~~~~~~-----------~----~~~~~~~p~~~~~~g~~L~V~V~~a~~L~~~~~~g~~dp 511 (835)
+... +...... + +..+....-++... |.+.+.+..++-.. +.-
T Consensus 860 e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~s-gv~~i~i~~g~l~~-------~~~ 931 (1227)
T COG5038 860 EKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKS-GVLGIQILSGELPD-------PGQ 931 (1227)
T ss_pred HHHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccC-CceEEEEEEeecCC-------cce
Confidence 0000 0000000 0 00000111122233 48888888876332 334
Q ss_pred EEEEEECC--eEeecccc-CCCCCccceEEEEEeeC-CceeEEEEEEEeccCCCceEEEEEEeccccccCC-eeeeEEec
Q 003259 512 YVKLQYGK--IVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIFGDENMGSARVNLEGLVEGS-VRDIWVPL 586 (835)
Q Consensus 512 yv~v~lg~--~~~kT~~~-~t~nP~Wne~f~f~v~~-~~~~L~i~V~d~d~~~d~~IG~~~i~L~~l~~~~-~~~~w~~L 586 (835)
|+.+.+++ ..+=+... .+..+.|.+.-...+.+ .-...+++|.+.....++.++..+++-.++..+. ..+.|+.+
T Consensus 932 ~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~ 1011 (1227)
T COG5038 932 YLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNF 1011 (1227)
T ss_pred EEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEec
Confidence 66666643 22222222 44455555543333322 3456778887753336889999988877776554 66788888
Q ss_pred ccCCCceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECCe-EeeeeeecCCCCCe
Q 003259 587 EKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQ 665 (835)
Q Consensus 587 ~~~~~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~ 665 (835)
.+. ..+.+++.|.|+. ........-.+.|.|.|.+..|.||+..|.+|.+||||++.++++ .++|+++++|+||+
T Consensus 1012 ~g~--~~~~v~~~~tPv~--~~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPv 1087 (1227)
T COG5038 1012 PGS--AKVLVQVSYTPVP--VKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPV 1087 (1227)
T ss_pred CCC--ceEEEEEEEeecc--cccCcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCC
Confidence 763 6899999999872 222223334568999999999999999999999999999999876 78999999999999
Q ss_pred eeeEEEeecC---CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEecCCCC----CcEEEEEEEE
Q 003259 666 WHQTLEFPDD---GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR----KGEIHVLITR 731 (835)
Q Consensus 666 wne~f~f~v~---~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~----~G~i~l~l~~ 731 (835)
|||.+..++. .+.+.+.|+|+|.-.+++.||.+.++|..+..+.+...-.+|+|+. .|.++....+
T Consensus 1088 wNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~ 1160 (1227)
T COG5038 1088 WNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNF 1160 (1227)
T ss_pred ccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeeccCcceEecccEeecceec
Confidence 9999999986 5789999999999999999999999999999998888888998765 4555555554
No 5
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.87 E-value=1.1e-21 Score=217.17 Aligned_cols=230 Identities=22% Similarity=0.310 Sum_probs=193.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeEeecccc-CCCCCccceEEEEEeeCCceeEEEEEEEeccCCCceEEE
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGS 566 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg-~~~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~~d~~IG~ 566 (835)
.|.|.|.+|+||++++..|..||||.|.++ ..++||.++ +++.|.|.|+|.|.+...-..|.|-|||.|..+|+.||.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d~~~D~~IGK 85 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRDLKRDDIIGK 85 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccccccccccce
Confidence 599999999999999999999999999995 568999999 999999999999998888889999999999449999999
Q ss_pred EEEeccccccCCeeeeEEecccCC-----CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCC
Q 003259 567 ARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSD 641 (835)
Q Consensus 567 ~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~D 641 (835)
+.+.=++|......+.|+.|.... +|+|++++...+.. ....+.+++++++++.+.+. |.+|
T Consensus 86 vai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~------------~~~~~~c~~L~~r~~~P~~~-~~~d 152 (800)
T KOG2059|consen 86 VAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAI------------QSSGLVCHVLKTRQGLPIIN-GQCD 152 (800)
T ss_pred eeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEecccc------------CCCcchhhhhhhcccCceeC-CCCC
Confidence 999999998777888999998753 79999999887432 23445666777777766654 4599
Q ss_pred CEEEEEECCe----EeeeeeecCCCCCeeeeEEEeecCC------------------CcEEEEEEE-CCCCCCCCeEEEE
Q 003259 642 PYVKVQYGDL----KKRTKVIFKTLNPQWHQTLEFPDDG------------------SPLTLHVRD-HNALLASSSIGDC 698 (835)
Q Consensus 642 Pyv~v~~~~~----~~kT~v~~~t~nP~wne~f~f~v~~------------------~~L~i~V~d-~d~~~~d~~iG~~ 698 (835)
||+++...+. ..+|++.++|.+|.|||.|+|.+.. -.|.+++|| .+....+.|+|++
T Consensus 153 p~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGev 232 (800)
T KOG2059|consen 153 PFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEV 232 (800)
T ss_pred cceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeE
Confidence 9999999553 4599999999999999999998731 257888898 5666679999999
Q ss_pred EEEccccCCCCceeeEEecCC----------CCCcEEEEEEEE
Q 003259 699 VVEYQRLPPNQMADKWIPLQG----------VRKGEIHVLITR 731 (835)
Q Consensus 699 ~i~l~~l~~~~~~~~w~~L~~----------~~~G~i~l~l~~ 731 (835)
.+++..+........||-|+. ..-|.+++.+.|
T Consensus 233 rv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y 275 (800)
T KOG2059|consen 233 RVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTY 275 (800)
T ss_pred EeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEe
Confidence 999998876667889999963 123889999988
No 6
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.87 E-value=2.6e-21 Score=179.09 Aligned_cols=112 Identities=19% Similarity=0.387 Sum_probs=101.9
Q ss_pred eEEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecC-CCCCeeeeEEEeecC--CCcEEEEEEECCCCCCCCeE
Q 003259 619 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK-TLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSI 695 (835)
Q Consensus 619 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~--~~~L~i~V~d~d~~~~d~~i 695 (835)
|.|+|+|++|++++..+ .|.+||||++.+++++++|+++.+ +.||+|||+|.|++. ...|.|+|||+|.+++|++|
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i 80 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI 80 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence 79999999999988777 789999999999999999999976 899999999999985 46899999999999999999
Q ss_pred EEEEEEcc-ccCCCCceeeEEecCC----CCCcEEEEEEEE
Q 003259 696 GDCVVEYQ-RLPPNQMADKWIPLQG----VRKGEIHVLITR 731 (835)
Q Consensus 696 G~~~i~l~-~l~~~~~~~~w~~L~~----~~~G~i~l~l~~ 731 (835)
|++.+++. .+..+...+.|++|.+ ...|+|+++++|
T Consensus 81 G~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 81 AWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 99999996 5777777899999976 456999999986
No 7
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.85 E-value=1.2e-20 Score=171.60 Aligned_cols=109 Identities=19% Similarity=0.310 Sum_probs=97.6
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECC----eEeeeeeecCCCCCeee
Q 003259 592 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD----LKKRTKVIFKTLNPQWH 667 (835)
Q Consensus 592 G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~----~~~kT~v~~~t~nP~wn 667 (835)
|+|+++++|. +..+.|+|+|++|++|+ ..|.+||||++++.. .+++|+++++|+||+||
T Consensus 1 ~~l~fsL~Y~--------------~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfn 63 (118)
T cd08677 1 PKLHYSLSYD--------------KQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWE 63 (118)
T ss_pred CeEEEEEEEc--------------CcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccc
Confidence 5789999998 78899999999999998 346699999999953 57799999999999999
Q ss_pred eEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEec
Q 003259 668 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 717 (835)
Q Consensus 668 e~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L 717 (835)
|+|.|.++ ..+|.|+|||+|+++++++||++.++++++..+...++|.+|
T Consensus 64 E~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 64 EELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred cEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 99999985 578999999999999999999999999998777777889765
No 8
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.83 E-value=8.3e-20 Score=171.37 Aligned_cols=114 Identities=29% Similarity=0.434 Sum_probs=103.4
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcC-CCCCCEEEEEECC-----eEeeeeeecCCCCC
Q 003259 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLR-GTSDPYVKVQYGD-----LKKRTKVIFKTLNP 664 (835)
Q Consensus 591 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~~-----~~~kT~v~~~t~nP 664 (835)
+|+|.+++.|. +..+.|.|+|++|+||++.+.. |.+||||++++.+ .++||+++++|+||
T Consensus 1 ~G~i~~sl~y~--------------~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP 66 (125)
T cd08393 1 QGSVQFALDYD--------------PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNP 66 (125)
T ss_pred CcEEEEEEEEE--------------CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCC
Confidence 49999999998 5668999999999999999875 8999999999942 35799999999999
Q ss_pred eeeeEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEecC
Q 003259 665 QWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 718 (835)
Q Consensus 665 ~wne~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 718 (835)
+|||+|.|++. ...|.++|||++.++++++||++.++|.++........||+|+
T Consensus 67 ~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 67 VFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred ccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 99999999985 4689999999999999999999999999998877889999984
No 9
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.82 E-value=1.4e-19 Score=169.61 Aligned_cols=114 Identities=21% Similarity=0.345 Sum_probs=103.2
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCc-CCCCCCEEEEEECC-----eEeeeeeecCCCCC
Q 003259 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADL-RGTSDPYVKVQYGD-----LKKRTKVIFKTLNP 664 (835)
Q Consensus 591 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP 664 (835)
+|+|++++.|. +..+.|.|+|++|+||+..+. .|.+||||++++.. .++||+++++++||
T Consensus 1 ~G~i~~sl~y~--------------~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP 66 (125)
T cd04029 1 SGEILFSLSYD--------------YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNP 66 (125)
T ss_pred CcEEEEEEEEE--------------CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCC
Confidence 59999999998 677999999999999998865 58999999999942 36799999999999
Q ss_pred eeeeEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEecC
Q 003259 665 QWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 718 (835)
Q Consensus 665 ~wne~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 718 (835)
+|||+|.|++. ...|.|+|||++.++++++||++.+++..+........|++|+
T Consensus 67 ~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 67 VYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred cccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 99999999985 4579999999999999999999999999999888899999984
No 10
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.82 E-value=7.7e-20 Score=172.11 Aligned_cols=110 Identities=29% Similarity=0.469 Sum_probs=98.9
Q ss_pred EEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC--------CCcEEEEEEECCCCCCC
Q 003259 621 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--------GSPLTLHVRDHNALLAS 692 (835)
Q Consensus 621 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~--------~~~L~i~V~d~d~~~~d 692 (835)
++|+|++|+||+..+..|.+||||++.+++.+++|+++++|+||+|||+|.|.+. ...|.++|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 5799999999999999999999999999999999999999999999999999863 35799999999999999
Q ss_pred CeEEEEEEEccccC--CCCceeeEEecCCC------CCcEEEEEEE
Q 003259 693 SSIGDCVVEYQRLP--PNQMADKWIPLQGV------RKGEIHVLIT 730 (835)
Q Consensus 693 ~~iG~~~i~l~~l~--~~~~~~~w~~L~~~------~~G~i~l~l~ 730 (835)
++||++.++++++. .+....+||+|.+. .+|+|+++++
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 99999999999987 56678899999742 3599999874
No 11
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.82 E-value=1.5e-19 Score=168.65 Aligned_cols=111 Identities=30% Similarity=0.525 Sum_probs=100.9
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECC-----eEeeeeeecCCCCCe
Q 003259 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ 665 (835)
Q Consensus 591 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~ 665 (835)
.|+|.+++.|. .+.|+|+|++|++|+..+ .|.+||||++++.+ .++||+++++++||+
T Consensus 1 ~G~l~~~l~y~----------------~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~ 63 (122)
T cd08381 1 GGQVKLSISYK----------------NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPT 63 (122)
T ss_pred CCeEEEEEEEe----------------CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCC
Confidence 38999999987 278999999999999999 89999999999953 478999999999999
Q ss_pred eeeEEEeec-C-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEecC
Q 003259 666 WHQTLEFPD-D-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 718 (835)
Q Consensus 666 wne~f~f~v-~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 718 (835)
|||+|.|++ + ...|.++|||++.++++++||++.++|+++..++....||+|.
T Consensus 64 wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~ 122 (122)
T cd08381 64 FNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPLG 122 (122)
T ss_pred cccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEECc
Confidence 999999986 2 5789999999999999999999999999998887789999973
No 12
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.81 E-value=4.3e-19 Score=168.70 Aligned_cols=119 Identities=30% Similarity=0.478 Sum_probs=108.2
Q ss_pred CCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC---CCcEEEEEEECCCC
Q 003259 613 NIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNAL 689 (835)
Q Consensus 613 ~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~---~~~L~i~V~d~d~~ 689 (835)
......|.|+|+|++|++|+..+..|.+||||++++++.+++|+++++|+||.|||+|.|.+. ...|.|+|||++.+
T Consensus 9 ~~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~ 88 (136)
T cd08375 9 QRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFF 88 (136)
T ss_pred cCCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCC
Confidence 345678999999999999999999999999999999999999999999999999999999975 46799999999999
Q ss_pred CCCCeEEEEEEEccccCC-----CCceeeEEecCCCCCcEEEEEEEE
Q 003259 690 LASSSIGDCVVEYQRLPP-----NQMADKWIPLQGVRKGEIHVLITR 731 (835)
Q Consensus 690 ~~d~~iG~~~i~l~~l~~-----~~~~~~w~~L~~~~~G~i~l~l~~ 731 (835)
++|++||++.+++.++.. .....+|.++.+..+|+|++++++
T Consensus 89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 89 SPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 999999999999998865 345678899998899999999987
No 13
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.80 E-value=8.5e-19 Score=164.57 Aligned_cols=114 Identities=27% Similarity=0.467 Sum_probs=104.9
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEEC---CeEeeeeeecCCCCCeee
Q 003259 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQWH 667 (835)
Q Consensus 591 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~v~~~t~nP~wn 667 (835)
.|+|++++.|. +..+.|+|+|++|++|+..+..|.+||||++++. ...++|+++++++||+||
T Consensus 2 ~G~l~~sl~y~--------------~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wn 67 (124)
T cd08387 2 RGELHFSLEYD--------------KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFD 67 (124)
T ss_pred CCEEEEEEEEC--------------CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcc
Confidence 59999999998 6679999999999999999999999999999994 357899999999999999
Q ss_pred eEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEecC
Q 003259 668 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 718 (835)
Q Consensus 668 e~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 718 (835)
|+|.|.+. ...|.++|||++.++++++||++.++++++..+...+.||+|+
T Consensus 68 e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 68 ESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred cEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 99999975 4589999999999999999999999999998777899999986
No 14
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.80 E-value=9.5e-19 Score=163.48 Aligned_cols=112 Identities=32% Similarity=0.551 Sum_probs=102.9
Q ss_pred EEEEEEEEeecCCcCCcCCCCCCEEEEEECC-eEeeeeeecCCCCCeeeeEEEeecC--CCcEEEEEEECCCCCCCCeEE
Q 003259 620 WIELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG 696 (835)
Q Consensus 620 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~v~--~~~L~i~V~d~d~~~~d~~iG 696 (835)
.|+|+|++|++|+..+..|.+||||++.+++ ..++|+++.+++||+|||.|.|.+. ...|.|+|||++.+++|++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 4789999999999999999999999999987 6789999999999999999999974 578999999999999999999
Q ss_pred EEEEEccccCCCCceeeEEecCCC----CCcEEEEEEEE
Q 003259 697 DCVVEYQRLPPNQMADKWIPLQGV----RKGEIHVLITR 731 (835)
Q Consensus 697 ~~~i~l~~l~~~~~~~~w~~L~~~----~~G~i~l~l~~ 731 (835)
++.++++++..+...+.|++|.+. ..|+|++.+++
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~ 119 (121)
T cd04042 81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTL 119 (121)
T ss_pred EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEE
Confidence 999999999988889999999643 35999999998
No 15
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.80 E-value=6.8e-19 Score=165.39 Aligned_cols=114 Identities=25% Similarity=0.384 Sum_probs=101.5
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcC-CCCCCEEEEEECC-----eEeeeeeecCCCCC
Q 003259 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLR-GTSDPYVKVQYGD-----LKKRTKVIFKTLNP 664 (835)
Q Consensus 591 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~~-----~~~kT~v~~~t~nP 664 (835)
.|+|.+++.|. +..+.|.|+|++|+||+..+.. |.+||||++++.. .++||+++++++||
T Consensus 1 ~G~i~~sl~Y~--------------~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nP 66 (128)
T cd08392 1 TGEIEFALHYN--------------FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNP 66 (128)
T ss_pred CcEEEEEEEEe--------------CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCC
Confidence 38999999998 6678999999999999999875 9999999999942 37799999999999
Q ss_pred eeeeEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCC---CceeeEEecC
Q 003259 665 QWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN---QMADKWIPLQ 718 (835)
Q Consensus 665 ~wne~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~---~~~~~w~~L~ 718 (835)
+|||+|.|++. ...|.+.|||++.++++++||++.|+|+++... .....||+|.
T Consensus 67 vfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 67 VFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred ccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 99999999985 468999999999999999999999999988543 4678999984
No 16
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.80 E-value=5.3e-19 Score=164.72 Aligned_cols=107 Identities=27% Similarity=0.435 Sum_probs=97.0
Q ss_pred EEEEEEEeec---CCcCCcCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC--CCcEEEEEEECCCCC-----
Q 003259 621 IELVIVEARD---LVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALL----- 690 (835)
Q Consensus 621 L~v~v~~a~~---L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~--~~~L~i~V~d~d~~~----- 690 (835)
|.|+|++|++ |+.+|..|.+||||++.+++++.||+++++++||+|||+|.|++. ...|.|+|||++.++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~ 81 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAV 81 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccC
Confidence 7899999999 889999999999999999999999999999999999999999974 567999999999874
Q ss_pred -CCCeEEEEEEEccccCCCCceeeEEecCC------CCCcEEEE
Q 003259 691 -ASSSIGDCVVEYQRLPPNQMADKWIPLQG------VRKGEIHV 727 (835)
Q Consensus 691 -~d~~iG~~~i~l~~l~~~~~~~~w~~L~~------~~~G~i~l 727 (835)
+|++||++.++++.+..+.....||+|.. ++.|+|+.
T Consensus 82 ~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 82 QPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 89999999999999998888999999963 34577764
No 17
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.80 E-value=1.1e-18 Score=161.86 Aligned_cols=110 Identities=33% Similarity=0.524 Sum_probs=103.0
Q ss_pred EEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC---CCcEEEEEEECCCCCCCCeEEE
Q 003259 621 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGD 697 (835)
Q Consensus 621 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~---~~~L~i~V~d~d~~~~d~~iG~ 697 (835)
++|+|++|++|+..+..|.+||||++++++.+.+|+++++|+||.|||+|.|.+. ...|.|+|||++.+++|++||+
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~ 81 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGR 81 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEE
Confidence 7899999999999998999999999999999999999999999999999999974 4789999999999999999999
Q ss_pred EEEEccccCCCCceeeEEecCCCCCcEEEEEEEE
Q 003259 698 CVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR 731 (835)
Q Consensus 698 ~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~l~~ 731 (835)
+.++++++..+.....|++|.+. +|+|++.++|
T Consensus 82 ~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~ 114 (116)
T cd08376 82 CEIDLSALPREQTHSLELELEDG-EGSLLLLLTL 114 (116)
T ss_pred EEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEe
Confidence 99999999888889999999864 6999999887
No 18
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.80 E-value=6e-19 Score=195.54 Aligned_cols=232 Identities=19% Similarity=0.321 Sum_probs=183.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCcCeEEEEEec--ceeeeeccCCCCCCcccceeEEEEEc
Q 003259 296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE--ELTRRTDARPGSDPRWDSMFNMVLHE 373 (835)
Q Consensus 296 vL~V~V~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~~~~dpyv~v~~g--~~~~t~~i~~~~nP~W~etf~~~v~~ 373 (835)
-|.|+|.+|+||++.+..|++ ||||.|.++ +..||.++.+++.|-|.|.|+|.+..
T Consensus 6 sl~vki~E~knL~~~~~~g~~----------------------D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~ 63 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMR----------------------DCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPR 63 (800)
T ss_pred ceeEEEeecccCCCCCCCCCc----------------------CcceEEeecchhhhhhhhhhhhcCCccccceEEecCc
Confidence 488999999999988777754 899999997 67899999999999999999999999
Q ss_pred CCceEEEEEEEeCCCCCCcceeEEEEEecccccCCCcc-ee----eeCCCCccccccccccCceeeeEeecCCCCcceEE
Q 003259 374 ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTT-FW----AIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELT 448 (835)
Q Consensus 374 ~~~~L~~~v~d~~~~~~kdd~LG~~~i~L~~L~~~~~~-~w----~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~l~ 448 (835)
....|.|.|||.| ..+|+.||.+.+.-.+|...+.. .| .|++|+.+ .|+++
T Consensus 64 ~F~~l~fYv~D~d--~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEV----------------------QG~v~ 119 (800)
T KOG2059|consen 64 TFRYLSFYVWDRD--LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEV----------------------QGKVH 119 (800)
T ss_pred ceeeEEEEEeccc--cccccccceeeeeHHHHhhCCCCccceeccccCCChhh----------------------ceeEE
Confidence 9999999999998 57999999999999998876643 35 35555543 38888
Q ss_pred EEEEEeecccCCCCcccCccccCCCccccCCCCccCCCCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eEeec
Q 003259 449 VRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK----IVQRT 524 (835)
Q Consensus 449 ~~l~l~~~~~~d~~~~~~~~~~~~~~~~~~~p~~~~~~g~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~----~~~kT 524 (835)
+++.+.+..-+ . -+...+++++++-+.. ++.+||||++...+ +..+|
T Consensus 120 l~l~~~e~~~~--------------------------~--~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T 170 (800)
T KOG2059|consen 120 LELALTEAIQS--------------------------S--GLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKT 170 (800)
T ss_pred EEEEeccccCC--------------------------C--cchhhhhhhcccCcee-CCCCCcceEEeecccchhhcccc
Confidence 88765431110 1 2455556666765554 56699999999943 34699
Q ss_pred ccc-CCCCCccceEEEEEeeCC----------------ceeEEEEEEEeccC--CCceEEEEEEeccccccCCeeeeEEe
Q 003259 525 RTA-HSPNHVWNQKFELDEIGG----------------GECLMVKCYNEEIF--GDENMGSARVNLEGLVEGSVRDIWVP 585 (835)
Q Consensus 525 ~~~-~t~nP~Wne~f~f~v~~~----------------~~~L~i~V~d~d~~--~d~~IG~~~i~L~~l~~~~~~~~w~~ 585 (835)
+++ .+.+|.|+|.|+|.+..+ ...|++.+|++... ++.++|++.+++..+........||.
T Consensus 171 ~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~ 250 (800)
T KOG2059|consen 171 KVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYY 250 (800)
T ss_pred ceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEE
Confidence 999 999999999999986543 34688899985443 79999999999999887777789999
Q ss_pred cccCC----------CceEEEEEEEee
Q 003259 586 LEKVN----------TGELRLQIEATR 602 (835)
Q Consensus 586 L~~~~----------~G~I~l~l~~~~ 602 (835)
|.+.. .|.+++.+.|..
T Consensus 251 Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 251 LQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred EecCCCcccCCCCCCccceeeeEEeee
Confidence 97532 488999998863
No 19
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.80 E-value=9.3e-19 Score=166.92 Aligned_cols=119 Identities=28% Similarity=0.397 Sum_probs=103.7
Q ss_pred cccCCCceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCC-cCCCCCCEEEEEECC-----eEeeeeeec
Q 003259 586 LEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD-LRGTSDPYVKVQYGD-----LKKRTKVIF 659 (835)
Q Consensus 586 L~~~~~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~-----~~~kT~v~~ 659 (835)
+.....|+|.+++.|. .+.|.|+|++|+||+..+ ..|.+||||++++.. .++||++++
T Consensus 12 ~~~~~~G~l~lsl~y~----------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~k 75 (146)
T cd04028 12 LASPSMGDIQLGLYDK----------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIAR 75 (146)
T ss_pred ccCCCcceEEEEEEeC----------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecC
Confidence 3344579999999984 278999999999998874 678999999999943 378999999
Q ss_pred CCCCCeeeeEEEeecC--CCcEEEEEE-ECCCCCCCCeEEEEEEEccccCCCCceeeEEecCCC
Q 003259 660 KTLNPQWHQTLEFPDD--GSPLTLHVR-DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV 720 (835)
Q Consensus 660 ~t~nP~wne~f~f~v~--~~~L~i~V~-d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 720 (835)
+|+||+|||+|.|++. +..|.|+|| |++.++++++||++.|+|+++..+.....||+|...
T Consensus 76 ktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 76 KTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 9999999999999984 778999999 688888999999999999999888788999999753
No 20
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.79 E-value=4.5e-19 Score=164.90 Aligned_cols=112 Identities=27% Similarity=0.415 Sum_probs=100.7
Q ss_pred eEEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecC-CCCCeeeeEEEeecC---CCcEEEEEEECCCCCCCCe
Q 003259 619 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK-TLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSS 694 (835)
Q Consensus 619 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~---~~~L~i~V~d~d~~~~d~~ 694 (835)
|.|+|+|++|++|+..+..|.+||||++++++.+.+|+++.+ ++||+|||.|.|.+. .+.|.|+|||++..+ |++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 689999999999999999999999999999999999999865 799999999999985 467999999999876 899
Q ss_pred EEEEEEEccccCCCCceeeEEecCC--CCCcEEEEEEEE
Q 003259 695 IGDCVVEYQRLPPNQMADKWIPLQG--VRKGEIHVLITR 731 (835)
Q Consensus 695 iG~~~i~l~~l~~~~~~~~w~~L~~--~~~G~i~l~l~~ 731 (835)
||++.++++++..+....+|++|.+ ...|+|+++++|
T Consensus 80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 9999999999877667899999964 456999999975
No 21
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.79 E-value=1.2e-18 Score=164.13 Aligned_cols=112 Identities=27% Similarity=0.397 Sum_probs=101.0
Q ss_pred EEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecCC------CcEEEEEEECCCCC-CC
Q 003259 620 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDG------SPLTLHVRDHNALL-AS 692 (835)
Q Consensus 620 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~------~~L~i~V~d~d~~~-~d 692 (835)
.|+|+|++|++|+..+..|.+||||++++++++++|+++++++||+|||.|.|.+.. ..|.|+|||++.++ ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 489999999999999988999999999999999999999999999999999999752 46999999999887 89
Q ss_pred CeEEEEEEEccccC-CCCceeeEEecCCC-----CCcEEEEEEEE
Q 003259 693 SSIGDCVVEYQRLP-PNQMADKWIPLQGV-----RKGEIHVLITR 731 (835)
Q Consensus 693 ~~iG~~~i~l~~l~-~~~~~~~w~~L~~~-----~~G~i~l~l~~ 731 (835)
++||++.++++++. .+....+||+|+.. .+|+|++++.+
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 125 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYI 125 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEE
Confidence 99999999999987 56678899999743 57999999876
No 22
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.79 E-value=1.6e-18 Score=160.45 Aligned_cols=112 Identities=23% Similarity=0.438 Sum_probs=99.8
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-C-CCCCccceEEEEEeeCCceeEEEEEEEeccC-CCceE
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENM 564 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~~kT~~~-~-t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~-~d~~I 564 (835)
|.|.|+|++|++++..+ .|.+||||++.+|+++++|+++ + +.||.|||+|.|.+......|.|+|||++.+ +|++|
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i 80 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI 80 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence 48999999999987766 7899999999999999999998 4 8999999999999877667899999999988 78999
Q ss_pred EEEEEecc-ccccCCeeeeEEeccc----CCCceEEEEEEE
Q 003259 565 GSARVNLE-GLVEGSVRDIWVPLEK----VNTGELRLQIEA 600 (835)
Q Consensus 565 G~~~i~L~-~l~~~~~~~~w~~L~~----~~~G~I~l~l~~ 600 (835)
|.+.+++. .+..+...+.|++|.+ ...|+|+|+++|
T Consensus 81 G~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 81 AWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 99999996 5767777789999987 346999999986
No 23
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.79 E-value=1.8e-18 Score=161.04 Aligned_cols=110 Identities=26% Similarity=0.396 Sum_probs=101.6
Q ss_pred EEEEEEEeecCCcCCcCCCCCCEEEEEECC---eEeeeeeecCCCCCeeeeEEEeecC---CCcEEEEEEECCCCCCCCe
Q 003259 621 IELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSS 694 (835)
Q Consensus 621 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~---~~~L~i~V~d~d~~~~d~~ 694 (835)
|+|+|++|++|+..+..|.+||||++++++ .+++|++++++.||+|||+|.|.+. ...|.|+|||++.+ +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999999889999999999963 5789999999999999999999975 45699999999998 8999
Q ss_pred EEEEEEEccccCCCCceeeEEecCCCCCcEEEEEEEE
Q 003259 695 IGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR 731 (835)
Q Consensus 695 iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~l~~ 731 (835)
||++.++++++..+.....|++|.++.+|++++++.+
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 9999999999998889999999999889999999987
No 24
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.78 E-value=3.1e-18 Score=160.79 Aligned_cols=114 Identities=32% Similarity=0.459 Sum_probs=104.3
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECC---eEeeeeeecCCCCCeee
Q 003259 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWH 667 (835)
Q Consensus 591 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wn 667 (835)
.|+|.++++|. ...+.|+|+|++|++|+..+..|.+||||++++.+ .+++|+++++++||+||
T Consensus 2 ~G~l~~~l~y~--------------~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wn 67 (124)
T cd08385 2 LGKLQFSLDYD--------------FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 67 (124)
T ss_pred ccEEEEEEEEe--------------CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCcee
Confidence 59999999998 66789999999999999999999999999999843 46799999999999999
Q ss_pred eEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEecC
Q 003259 668 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 718 (835)
Q Consensus 668 e~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 718 (835)
|+|.|.+. ...|.|+|||++.++++++||++.++++++..+...++|++|.
T Consensus 68 e~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 68 ETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred eeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 99999975 4589999999999999999999999999998888899999985
No 25
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.78 E-value=4.1e-18 Score=160.47 Aligned_cols=115 Identities=30% Similarity=0.317 Sum_probs=101.5
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcC-CCCCCEEEEEEC---CeEeeeeeecCCCCCee
Q 003259 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLR-GTSDPYVKVQYG---DLKKRTKVIFKTLNPQW 666 (835)
Q Consensus 591 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~---~~~~kT~v~~~t~nP~w 666 (835)
.|+|.+++.|. +..+.|+|+|++|+||+..+.. |.+||||++.+. .++.||+++++|+||+|
T Consensus 2 ~G~l~~~l~y~--------------~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~w 67 (128)
T cd08388 2 LGTLFFSLRYN--------------SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVY 67 (128)
T ss_pred CeEEEEEEEEE--------------CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCce
Confidence 59999999998 6778999999999999998876 899999999995 34679999999999999
Q ss_pred eeEEEee-cC-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCC--CceeeEEecCC
Q 003259 667 HQTLEFP-DD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN--QMADKWIPLQG 719 (835)
Q Consensus 667 ne~f~f~-v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~--~~~~~w~~L~~ 719 (835)
||+|.|. +. ...|.++|||+|.+++|++||++.++|+++... .+...|.+|+.
T Consensus 68 nE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 68 DETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred eeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 9999994 43 457999999999999999999999999998654 66889999863
No 26
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=2.3e-18 Score=166.20 Aligned_cols=112 Identities=24% Similarity=0.445 Sum_probs=100.2
Q ss_pred EEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecC-CCCCeeeeEEEeecC---CCcEEEEEEECCCCCCCCeE
Q 003259 620 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK-TLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSI 695 (835)
Q Consensus 620 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~---~~~L~i~V~d~d~~~~d~~i 695 (835)
.|+|+|++|++|++.+..|.+||||++.+++++.+|+++.+ |+||+|||.|.|.+. ...|.|+|+|++..++|++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 37899999999999999999999999999999999999977 699999999999984 46899999999998899999
Q ss_pred EEEEEEccccCCC----CceeeEEecCCC-----------CCcEEEEEEEE
Q 003259 696 GDCVVEYQRLPPN----QMADKWIPLQGV-----------RKGEIHVLITR 731 (835)
Q Consensus 696 G~~~i~l~~l~~~----~~~~~w~~L~~~-----------~~G~i~l~l~~ 731 (835)
|++.++|+++..+ ...++||+|.+. .+|+|++.++|
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~ 131 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCL 131 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEe
Confidence 9999999998643 457899999743 24999999998
No 27
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.78 E-value=2.2e-18 Score=161.02 Aligned_cols=112 Identities=32% Similarity=0.626 Sum_probs=102.4
Q ss_pred eEEEEEEEEeecCCcCCc------CCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC---CCcEEEEEEECCCC
Q 003259 619 GWIELVIVEARDLVAADL------RGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNAL 689 (835)
Q Consensus 619 g~L~v~v~~a~~L~~~d~------~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~---~~~L~i~V~d~d~~ 689 (835)
|.|+|+|++|++|+..+. .|.+||||++.+++..++|++++++.||+|||+|.|.+. ...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 679999999999998874 378999999999999999999999999999999999975 57899999999988
Q ss_pred CCCCeEEEEEEEccccCCCCceeeEEecCCCCCcEEEEEEEE
Q 003259 690 LASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR 731 (835)
Q Consensus 690 ~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~l~~ 731 (835)
++++||++.++++++..+...++|++|.+...|+|++++++
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 89999999999999987777899999998889999999864
No 28
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.78 E-value=3.6e-18 Score=159.20 Aligned_cols=111 Identities=26% Similarity=0.366 Sum_probs=99.0
Q ss_pred EEEEEEEeecCCcCC-cCCCCCCEEEEEECCe-EeeeeeecCCCCCeeeeEEEeecC--CCcEEEEEEECCCCCCCCeEE
Q 003259 621 IELVIVEARDLVAAD-LRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG 696 (835)
Q Consensus 621 L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~--~~~L~i~V~d~d~~~~d~~iG 696 (835)
|+|.|++|+||+..+ ..|.+||||+|.+++. .++|+++++|+||+|||+|.|.+. ...|.+.|||++.+++|++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 678999999999874 4678999999999775 689999999999999999999986 378999999999999999999
Q ss_pred EEEEEccccCCCCceeeEEecCCC-----CCcEEEEEEEE
Q 003259 697 DCVVEYQRLPPNQMADKWIPLQGV-----RKGEIHVLITR 731 (835)
Q Consensus 697 ~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~l~~ 731 (835)
.+.++++++..+...+.||+|+.. .+|+|++++++
T Consensus 82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 999999999887788999999742 37999999864
No 29
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.77 E-value=3.7e-18 Score=159.94 Aligned_cols=114 Identities=21% Similarity=0.320 Sum_probs=103.5
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECC---eEeeeeeecCCCCCeee
Q 003259 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWH 667 (835)
Q Consensus 591 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wn 667 (835)
.|+|.+++.|. +..+.|.|+|++|+||+..+..|.+||||++.+.. +++||+++++ .||+||
T Consensus 2 ~G~l~~sl~Y~--------------~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fn 66 (124)
T cd08389 2 CGDLDVAFEYD--------------PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFN 66 (124)
T ss_pred CEEEEEEEEEC--------------CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCccc
Confidence 59999999998 67789999999999999999999999999988732 5789999988 999999
Q ss_pred eEEEee-cC-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEecCC
Q 003259 668 QTLEFP-DD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG 719 (835)
Q Consensus 668 e~f~f~-v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~ 719 (835)
|+|.|+ +. +..|.++|||++.++++++||++.|+|+++..+.....|++|++
T Consensus 67 E~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 67 ETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred CEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 999998 54 56799999999999999999999999999988888999999973
No 30
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.77 E-value=3e-18 Score=159.60 Aligned_cols=111 Identities=19% Similarity=0.327 Sum_probs=99.5
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEEC--C----eEeeeeeecCCCCCee
Q 003259 593 ELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG--D----LKKRTKVIFKTLNPQW 666 (835)
Q Consensus 593 ~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~--~----~~~kT~v~~~t~nP~w 666 (835)
+|.+++.|. +..+.|.|+|++|+||+..+..|.+||||++++. + .++||+++++++||+|
T Consensus 2 ~i~~sL~Y~--------------~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvf 67 (124)
T cd08680 2 QVQIGLRYD--------------SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVF 67 (124)
T ss_pred eEEEEEEEC--------------CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCcc
Confidence 688899887 7779999999999999999988999999999983 2 4789999999999999
Q ss_pred eeEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCC-CceeeEEec
Q 003259 667 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN-QMADKWIPL 717 (835)
Q Consensus 667 ne~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~-~~~~~w~~L 717 (835)
||+|.|+++ +..|.++|||++.++++++||++.|+|+++... ....+||+|
T Consensus 68 nE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 68 NEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred ccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 999999985 578999999999999999999999999999654 357889986
No 31
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.77 E-value=3.4e-18 Score=161.40 Aligned_cols=113 Identities=33% Similarity=0.559 Sum_probs=102.0
Q ss_pred eEEEEEEEEeecCCcCCc--CCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC---CCcEEEEEEECCCCCCCC
Q 003259 619 GWIELVIVEARDLVAADL--RGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASS 693 (835)
Q Consensus 619 g~L~v~v~~a~~L~~~d~--~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~---~~~L~i~V~d~d~~~~d~ 693 (835)
|.|+|.|++|++|+..+. .|.+||||++.+++.+++|+++++|+||+|||+|.|++. ...|.|+|||++..++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 689999999999999988 889999999999999999999999999999999999985 678999999999998999
Q ss_pred eEEEEEEEccccC---CCCceeeEEecCCC-------CCcEEEEEEEE
Q 003259 694 SIGDCVVEYQRLP---PNQMADKWIPLQGV-------RKGEIHVLITR 731 (835)
Q Consensus 694 ~iG~~~i~l~~l~---~~~~~~~w~~L~~~-------~~G~i~l~l~~ 731 (835)
+||++.+++.++. ......+||+|++. ..|+|++++++
T Consensus 81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 9999999999986 33457899999754 47999999864
No 32
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.77 E-value=5.8e-18 Score=159.15 Aligned_cols=114 Identities=29% Similarity=0.452 Sum_probs=103.8
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEEC---CeEeeeeeecCCCCCeee
Q 003259 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQWH 667 (835)
Q Consensus 591 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~v~~~t~nP~wn 667 (835)
.|+|++++.|. +..+.|+|+|++|++|+..+..|.+||||++.+. ..+.+|+++++++||+||
T Consensus 2 ~G~l~~~l~y~--------------~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wn 67 (125)
T cd08386 2 LGRIQFSVSYD--------------FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN 67 (125)
T ss_pred ccEEEEEEEEC--------------CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccc
Confidence 49999999997 6778999999999999999989999999999993 467899999999999999
Q ss_pred eEEEeec-C-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEecC
Q 003259 668 QTLEFPD-D-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 718 (835)
Q Consensus 668 e~f~f~v-~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 718 (835)
|+|.|++ . ...|.++|||++.++++++||++.++++++..+.....|++|+
T Consensus 68 e~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 68 ETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 9999974 2 3579999999999999999999999999998888899999986
No 33
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.77 E-value=4.4e-18 Score=161.16 Aligned_cols=100 Identities=27% Similarity=0.385 Sum_probs=89.5
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCc--CCCCCCEEEEEECC-----eEeeeeeecCCCC
Q 003259 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADL--RGTSDPYVKVQYGD-----LKKRTKVIFKTLN 663 (835)
Q Consensus 591 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~--~g~~DPyv~v~~~~-----~~~kT~v~~~t~n 663 (835)
.|+|.++++|. +..+.|.|.|++|+||+..+. .+.+||||++++.. .++||+++++++|
T Consensus 1 ~Gel~~sL~Y~--------------~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~n 66 (138)
T cd08407 1 TGEVLLSISYL--------------PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKIN 66 (138)
T ss_pred CCEEEEEEEEe--------------CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCC
Confidence 49999999998 677999999999999999883 35599999999944 3669999999999
Q ss_pred CeeeeEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEccc
Q 003259 664 PQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQR 704 (835)
Q Consensus 664 P~wne~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~ 704 (835)
|+|||+|.|.++ +..|.|+|||+|.++++++||++.+++..
T Consensus 67 PvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 67 PVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred CccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 999999999985 47799999999999999999999999874
No 34
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.77 E-value=5.3e-18 Score=159.41 Aligned_cols=113 Identities=31% Similarity=0.482 Sum_probs=99.8
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECC-----eEeeeeeecCCCCCe
Q 003259 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ 665 (835)
Q Consensus 591 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~ 665 (835)
.|+|.+++.|. +..+.|+|+|++|++|+..+..+.+||||++++.+ .+++|+++++++||+
T Consensus 2 ~G~l~~~l~~~--------------~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~ 67 (125)
T cd04031 2 TGRIQIQLWYD--------------KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPE 67 (125)
T ss_pred cEEEEEEEEEe--------------CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCc
Confidence 48999999998 66789999999999999999889999999999964 577999999999999
Q ss_pred eeeEEEeec-C-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEecC
Q 003259 666 WHQTLEFPD-D-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 718 (835)
Q Consensus 666 wne~f~f~v-~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 718 (835)
|||+|.|++ . ...|.|+|||++.++++++||++.++|++.. ......||+|+
T Consensus 68 wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 68 WNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred cccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 999999985 2 4689999999999999999999999999832 23457999985
No 35
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.77 E-value=8.1e-18 Score=158.62 Aligned_cols=114 Identities=23% Similarity=0.433 Sum_probs=103.7
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEEC-----CeEeeeeeecCCCCCe
Q 003259 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQ 665 (835)
Q Consensus 591 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~ 665 (835)
.|+|.+++.|. +..+.|+|+|++|+||+..+..+.+||||++.+. ..+++|++++++.||+
T Consensus 2 ~G~l~~~l~y~--------------~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~ 67 (127)
T cd04030 2 LGRIQLTIRYS--------------SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPV 67 (127)
T ss_pred CeEEEEEEEEe--------------CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCE
Confidence 59999999998 6679999999999999999999999999999994 3578999999999999
Q ss_pred eeeEEEeecC-----CCcEEEEEEECCCC--CCCCeEEEEEEEccccCCCCceeeEEecC
Q 003259 666 WHQTLEFPDD-----GSPLTLHVRDHNAL--LASSSIGDCVVEYQRLPPNQMADKWIPLQ 718 (835)
Q Consensus 666 wne~f~f~v~-----~~~L~i~V~d~d~~--~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 718 (835)
|||+|.|.+. ...|.+.|||++.+ +++++||++.+++.++..+.....||+|+
T Consensus 68 wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 68 FDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 9999999974 46899999999986 68999999999999998888889999984
No 36
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.76 E-value=7.9e-18 Score=157.76 Aligned_cols=112 Identities=29% Similarity=0.457 Sum_probs=101.7
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCC-cCCCCCCEEEEEECC-----eEeeeeeecCCCCCe
Q 003259 592 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD-LRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ 665 (835)
Q Consensus 592 G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~ 665 (835)
|+|.++++|. +..+.|+|+|++|+||+..+ ..|.+||||++++.+ .+.+|+++++++||+
T Consensus 1 G~i~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~ 66 (123)
T cd08521 1 GEIEFSLSYN--------------YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPV 66 (123)
T ss_pred CeEEEEEEEe--------------CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCc
Confidence 8999999997 67799999999999999988 788999999999832 467999999999999
Q ss_pred eeeEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEec
Q 003259 666 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 717 (835)
Q Consensus 666 wne~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L 717 (835)
|||+|.|.+. ...|.|+|||++.++++++||++.++++++..+.....||+|
T Consensus 67 wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 67 FNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred ccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 9999999975 458999999999999999999999999999877778999987
No 37
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.76 E-value=6.4e-18 Score=160.19 Aligned_cols=99 Identities=25% Similarity=0.362 Sum_probs=89.9
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECC-----eEeeeeeecCCCCCee
Q 003259 592 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW 666 (835)
Q Consensus 592 G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w 666 (835)
|+|.++++|. +..+.|.|+|++|+||+..+..|.+||||++++.+ .++||+++++|+||+|
T Consensus 2 G~i~~sL~Y~--------------~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~ 67 (136)
T cd08406 2 GEILLSLSYL--------------PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIF 67 (136)
T ss_pred cEEEEEEEEc--------------CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCee
Confidence 8999999998 66789999999999999999999999999999932 2668999999999999
Q ss_pred eeEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEccc
Q 003259 667 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQR 704 (835)
Q Consensus 667 ne~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~ 704 (835)
||+|.|.++ +..|.|+|||+|.++++++||++.++...
T Consensus 68 nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 68 NEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred ceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence 999999985 57799999999999999999999998653
No 38
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.76 E-value=6.6e-18 Score=156.78 Aligned_cols=109 Identities=25% Similarity=0.433 Sum_probs=96.2
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECC-----eEeeeeeecCCCCCee
Q 003259 592 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW 666 (835)
Q Consensus 592 G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w 666 (835)
|+|+++++|. .+.|.|+|++|+||++.+ .|.+||||++++.. .++||+++++++||+|
T Consensus 1 G~l~l~~~~~----------------~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~ 63 (119)
T cd08685 1 GQLKLSIEGQ----------------NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLF 63 (119)
T ss_pred CEEEEEEEEc----------------CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCcc
Confidence 7888888874 378999999999999998 88999999999953 3669999999999999
Q ss_pred eeEEEeecC----CCcEEEEEEECCCCC-CCCeEEEEEEEccccCCCCceeeEEec
Q 003259 667 HQTLEFPDD----GSPLTLHVRDHNALL-ASSSIGDCVVEYQRLPPNQMADKWIPL 717 (835)
Q Consensus 667 ne~f~f~v~----~~~L~i~V~d~d~~~-~d~~iG~~~i~l~~l~~~~~~~~w~~L 717 (835)
||+|.|++. ...|.++|||++..+ ++++||++.+++.++..+....+||.|
T Consensus 64 nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 64 HETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred ccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 999999985 356999999999876 478999999999999877778999986
No 39
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.75 E-value=7.3e-18 Score=155.68 Aligned_cols=99 Identities=24% Similarity=0.369 Sum_probs=88.1
Q ss_pred EEEEEEEEeecCCcCCcCCCCCCEEEEEE-C----C--eEeeeeeecCCCCCeeeeEEEeecCC------CcEEEEEEEC
Q 003259 620 WIELVIVEARDLVAADLRGTSDPYVKVQY-G----D--LKKRTKVIFKTLNPQWHQTLEFPDDG------SPLTLHVRDH 686 (835)
Q Consensus 620 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~-~----~--~~~kT~v~~~t~nP~wne~f~f~v~~------~~L~i~V~d~ 686 (835)
.|+|+|++|++|+..+ .|.+||||+|++ | . ++++|+++.+|+||+|||+|.|.+.. ..|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999887 489999999998 3 2 35689999999999999999999852 3599999999
Q ss_pred CCCCCCCeEEEEEEEccccCCCCceeeEEecCC
Q 003259 687 NALLASSSIGDCVVEYQRLPPNQMADKWIPLQG 719 (835)
Q Consensus 687 d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~ 719 (835)
+..+++++||++.+++.++..++....|++|..
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 988889999999999999998888999999974
No 40
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.75 E-value=3.4e-18 Score=161.17 Aligned_cols=93 Identities=29% Similarity=0.608 Sum_probs=87.6
Q ss_pred cceEEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC--CCcEEEEEEECCCCCCCCe
Q 003259 617 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSS 694 (835)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~--~~~L~i~V~d~d~~~~d~~ 694 (835)
..|.|+|+|.+|.+|..+|..+++||||.+.+|+++.||+++++++||+|||.|+|.+. ...|.++|||+|.+++|++
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~ 83 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDF 83 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccc
Confidence 46999999999999999999899999999999999999999999999999999999986 6789999999999999999
Q ss_pred EEEEEEEccccCCCC
Q 003259 695 IGDCVVEYQRLPPNQ 709 (835)
Q Consensus 695 iG~~~i~l~~l~~~~ 709 (835)
||.++|++..+....
T Consensus 84 mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 84 MGEATIPLKPLLEAQ 98 (168)
T ss_pred cceeeeccHHHHHHh
Confidence 999999999886543
No 41
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.75 E-value=1.7e-17 Score=158.12 Aligned_cols=112 Identities=29% Similarity=0.480 Sum_probs=98.0
Q ss_pred EEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC------------CCcEEEEEEECC
Q 003259 620 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD------------GSPLTLHVRDHN 687 (835)
Q Consensus 620 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~------------~~~L~i~V~d~d 687 (835)
.|+|+|++|++|+..|..|.+||||+|.+++.+++|+++++|+||+|||.|.|++. ...|.++|||+|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 68999999999999999999999999999999999999999999999999999741 246999999999
Q ss_pred CCCCCCeEEEEEE-EccccC---CCCceeeEEecC--CCCCcEEEEEEEE
Q 003259 688 ALLASSSIGDCVV-EYQRLP---PNQMADKWIPLQ--GVRKGEIHVLITR 731 (835)
Q Consensus 688 ~~~~d~~iG~~~i-~l~~l~---~~~~~~~w~~L~--~~~~G~i~l~l~~ 731 (835)
..++|++||++.+ ++..+. ......+|++|. +...|+|++++++
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~ 131 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFEL 131 (135)
T ss_pred CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEE
Confidence 9999999999997 444443 345788999996 3457999999998
No 42
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.75 E-value=2e-17 Score=155.72 Aligned_cols=109 Identities=25% Similarity=0.367 Sum_probs=98.8
Q ss_pred EEEEEEEeecCCcCCcCCCCCCEEEEEECC--eEeeeeeecCCCCCeeeeEEEeecC--CCcEEEEEEECCCCCCCCeEE
Q 003259 621 IELVIVEARDLVAADLRGTSDPYVKVQYGD--LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG 696 (835)
Q Consensus 621 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~--~~~kT~v~~~t~nP~wne~f~f~v~--~~~L~i~V~d~d~~~~d~~iG 696 (835)
|.|+|++|++|+. ..|.+||||+++++. ++++|+++++|+||+|||.|.|.+. ...|.|+|||++..++|++||
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence 5789999999987 678999999999974 6789999999999999999999985 578999999999999999999
Q ss_pred EEEEEccccCCCCceeeEEecCCC------CCcEEEEEEEE
Q 003259 697 DCVVEYQRLPPNQMADKWIPLQGV------RKGEIHVLITR 731 (835)
Q Consensus 697 ~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~l~~ 731 (835)
++.++++++..+.....|++|++. ..|+|++++.|
T Consensus 79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~ 119 (126)
T cd08678 79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLF 119 (126)
T ss_pred EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEE
Confidence 999999999887778899999743 47999999999
No 43
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.74 E-value=3.2e-17 Score=153.65 Aligned_cols=113 Identities=24% Similarity=0.317 Sum_probs=102.8
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCC-cCCCCCCEEEEEEC---CeEeeeeeecCCCCCeee
Q 003259 592 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD-LRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQWH 667 (835)
Q Consensus 592 G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~---~~~~kT~v~~~t~nP~wn 667 (835)
|+|.+++.|. +..+.|.|+|++|++|+..+ ..+.+||||++++. ....+|+++++++||+||
T Consensus 1 G~l~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wn 66 (123)
T cd08390 1 GRLWFSVQYD--------------LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFD 66 (123)
T ss_pred CEEEEEEEEC--------------CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccc
Confidence 8999999998 67789999999999999998 68899999999983 356799999999999999
Q ss_pred eEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEecC
Q 003259 668 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 718 (835)
Q Consensus 668 e~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 718 (835)
|.|.|.+. ...|.|+|||++..+++++||++.++|+++........|++|+
T Consensus 67 e~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 67 ETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred eEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 99999975 3579999999999989999999999999998888889999986
No 44
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.74 E-value=2.1e-17 Score=154.95 Aligned_cols=110 Identities=30% Similarity=0.518 Sum_probs=98.5
Q ss_pred EEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC---CCcEEEEEEECCCCCCCCeEE
Q 003259 620 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG 696 (835)
Q Consensus 620 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~---~~~L~i~V~d~d~~~~d~~iG 696 (835)
+|+|+|++|++|+..+..|.+||||++++++.+.+|+++++|+||+|||+|.|.+. ...|.|+|||++.++++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 48999999999999998899999999999999999999999999999999999975 357999999999999999999
Q ss_pred EEEEEccccCCCCceeeEEecCC---------CCCcEEEEEE
Q 003259 697 DCVVEYQRLPPNQMADKWIPLQG---------VRKGEIHVLI 729 (835)
Q Consensus 697 ~~~i~l~~l~~~~~~~~w~~L~~---------~~~G~i~l~l 729 (835)
++.++++++..+.....||+|.. ...|.|++.+
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 99999999977777889999963 2348887765
No 45
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=2e-17 Score=157.34 Aligned_cols=112 Identities=30% Similarity=0.443 Sum_probs=98.8
Q ss_pred EEEEEEEEeecCCcCCcCCCCCCEEEEEECCe-------EeeeeeecCCCCCeeeeEEEeecC--CCcEEEEEEECCCCC
Q 003259 620 WIELVIVEARDLVAADLRGTSDPYVKVQYGDL-------KKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALL 690 (835)
Q Consensus 620 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~v~~~t~nP~wne~f~f~v~--~~~L~i~V~d~d~~~ 690 (835)
.|+|+|++|++|+..+..|.+||||++.+++. +++|+++++|+||+|||+|.|.+. ...|.++|||++.++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 37899999999999999999999999999654 579999999999999999999975 567999999999999
Q ss_pred CCCeEEEEEEEccccCCCC------ceeeEEecCC-----CCCcEEEEEEEE
Q 003259 691 ASSSIGDCVVEYQRLPPNQ------MADKWIPLQG-----VRKGEIHVLITR 731 (835)
Q Consensus 691 ~d~~iG~~~i~l~~l~~~~------~~~~w~~L~~-----~~~G~i~l~l~~ 731 (835)
++++||++.++++++..+. ....||+|++ ..+|+|+++++|
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 9999999999999986543 3569999974 347999999987
No 46
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.74 E-value=1.9e-17 Score=162.04 Aligned_cols=127 Identities=25% Similarity=0.389 Sum_probs=107.4
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEEC-----CeEeeeeeecCCCCCe
Q 003259 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQ 665 (835)
Q Consensus 591 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~ 665 (835)
.|+|.++++|.+....... .....+.|.|+|+|++|+||+..+..|.+||||++++. ..++||+++++|+||+
T Consensus 1 ~G~l~~~l~y~~~~~~~~~--~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~ 78 (162)
T cd04020 1 RGELKVALKYVPPESEGAL--KSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPV 78 (162)
T ss_pred CceEEEEEEecCccccccc--cccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCC
Confidence 4999999999975432211 11235789999999999999999999999999999983 3578999999999999
Q ss_pred eeeEEEeecC------CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEecCC
Q 003259 666 WHQTLEFPDD------GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG 719 (835)
Q Consensus 666 wne~f~f~v~------~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~ 719 (835)
|||+|.|.+. ...|.|+|||++.++++++||++.+++..+......+.|+++.+
T Consensus 79 WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 79 WNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 9999999842 35799999999999999999999999999987777899999875
No 47
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.74 E-value=3.8e-17 Score=152.17 Aligned_cols=111 Identities=27% Similarity=0.535 Sum_probs=100.6
Q ss_pred eEEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC--CCcEEEEEEECCCCCCCCeEE
Q 003259 619 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG 696 (835)
Q Consensus 619 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~--~~~L~i~V~d~d~~~~d~~iG 696 (835)
|.|+|+|++|++|+..+..+.+||||++++++...+|++++++.||.|||+|.|++. ...|.|+|||++..+++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 689999999999999999999999999999998899999999999999999999975 578999999999989999999
Q ss_pred EEEEEccccCCCCceeeEEecCC-----CCCcEEEEEEEE
Q 003259 697 DCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLITR 731 (835)
Q Consensus 697 ~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~l~~ 731 (835)
++.+++.++..+ ..+|++|.. ..+|+|++++++
T Consensus 81 ~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 81 KVAIPLLSIKNG--ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred EEEEEHHHCCCC--CceEEECcccCCCCceeeEEEEEEEe
Confidence 999999998654 468999963 247999999886
No 48
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.74 E-value=4.9e-17 Score=152.85 Aligned_cols=109 Identities=24% Similarity=0.436 Sum_probs=95.9
Q ss_pred eEEEEEEEEeecCCcCCcCCCCCCEEEEEECCe-EeeeeeecCCCCCeeeeEEEeecCC---CcEEEEEEECCCCCCCCe
Q 003259 619 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDDG---SPLTLHVRDHNALLASSS 694 (835)
Q Consensus 619 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~---~~L~i~V~d~d~~~~d~~ 694 (835)
..|+|+|++|+||+.. +.+||||+|++++. ..+|++. +++||+|||+|.|++.. ..++|.|||++..++|++
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~ 79 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE 79 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence 5799999999999875 47899999999874 4789974 68999999999999642 578999999999999999
Q ss_pred EEEEEEEccccCCCCceeeEEecCCC------CCcEEEEEEEE
Q 003259 695 IGDCVVEYQRLPPNQMADKWIPLQGV------RKGEIHVLITR 731 (835)
Q Consensus 695 iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~l~~ 731 (835)
||++.++|+.+..+...+.|++|.+. ..|+|+++++|
T Consensus 80 iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~ 122 (126)
T cd08400 80 IAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARY 122 (126)
T ss_pred EEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEE
Confidence 99999999999888888999999643 34999999999
No 49
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.74 E-value=3.7e-17 Score=152.63 Aligned_cols=110 Identities=30% Similarity=0.503 Sum_probs=97.7
Q ss_pred EEEEEEEeecCCcCCcCCCCCCEEEEEECCe-EeeeeeecCCCCCeeeeEEEeecC--CCcEEEEEEECCCCCCCCeEEE
Q 003259 621 IELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIGD 697 (835)
Q Consensus 621 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~--~~~L~i~V~d~d~~~~d~~iG~ 697 (835)
|.|+|++|++|+..+..|.+||||++.+++. ..+|+++++|+||+|||.|.|++. ...|.|+|||++.+++|++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 7899999999999999999999999999875 469999999999999999999985 3689999999999999999999
Q ss_pred EEEEccccCCC-CceeeEEecCCC-----CCcEEEEEEE
Q 003259 698 CVVEYQRLPPN-QMADKWIPLQGV-----RKGEIHVLIT 730 (835)
Q Consensus 698 ~~i~l~~l~~~-~~~~~w~~L~~~-----~~G~i~l~l~ 730 (835)
+.++++.+..+ ...+.|++|++. ..|+|+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999888653 347899999753 3799998875
No 50
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.74 E-value=2.6e-17 Score=153.39 Aligned_cols=107 Identities=31% Similarity=0.565 Sum_probs=94.5
Q ss_pred EEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC---CCcEEEEEEECCCCCCCCeEE
Q 003259 620 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG 696 (835)
Q Consensus 620 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~---~~~L~i~V~d~d~~~~d~~iG 696 (835)
.|+|+|++|++|+.. .+||||++.+++.+.+|+++++|+||+|||+|.|.+. ...|.++|||++.. ++++||
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG 75 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLG 75 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceee
Confidence 378999999999887 7899999999999999999999999999999999975 56799999999987 789999
Q ss_pred EEEEEccccCCCC-----ceeeEEecCCC----CCcEEEEEEEE
Q 003259 697 DCVVEYQRLPPNQ-----MADKWIPLQGV----RKGEIHVLITR 731 (835)
Q Consensus 697 ~~~i~l~~l~~~~-----~~~~w~~L~~~----~~G~i~l~l~~ 731 (835)
++.++++++..+. ...+||+|.+. .+|+|++++.|
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 9999999986532 35799999754 36999999977
No 51
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.73 E-value=6.5e-17 Score=157.77 Aligned_cols=113 Identities=26% Similarity=0.451 Sum_probs=99.6
Q ss_pred ceEEEEEEEEeecCCcCC------------------------------cCCCCCCEEEEEECCeE-eeeeeecCCCCCee
Q 003259 618 NGWIELVIVEARDLVAAD------------------------------LRGTSDPYVKVQYGDLK-KRTKVIFKTLNPQW 666 (835)
Q Consensus 618 ~g~L~v~v~~a~~L~~~d------------------------------~~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~w 666 (835)
.|.|.|+|++|++|+++| ..|.+||||+|++++.+ .+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 489999999999999887 35778999999998754 69999999999999
Q ss_pred eeEEEeecC--CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEecCC------CCCcEEEEEEEE
Q 003259 667 HQTLEFPDD--GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG------VRKGEIHVLITR 731 (835)
Q Consensus 667 ne~f~f~v~--~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~------~~~G~i~l~l~~ 731 (835)
||+|.|++. .+.|.|+|+|+|.++ +++||++.++++++..+...++|++|.+ ...|+|+++++|
T Consensus 86 nE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 999999974 568999999999876 5799999999999988888999999953 235899999987
No 52
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.72 E-value=9.5e-17 Score=152.38 Aligned_cols=112 Identities=28% Similarity=0.474 Sum_probs=101.1
Q ss_pred ceEEEEEEEEeecCCcCCc----------CCCCCCEEEEEECCeE-eeeeeecCCCCCeeeeEEEeecC-CCcEEEEEEE
Q 003259 618 NGWIELVIVEARDLVAADL----------RGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRD 685 (835)
Q Consensus 618 ~g~L~v~v~~a~~L~~~d~----------~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~-~~~L~i~V~d 685 (835)
.|.|+|+|++|++|+..+. .|.+||||++.+++++ .+|+++++|+||.|||+|.|++. ...|.|.|||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~l~~~v~d 82 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHNGRNLELTVFH 82 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCCCCEEEEEEEe
Confidence 4889999999999998875 3689999999998854 69999999999999999999996 6789999999
Q ss_pred CCCCCCCCeEEEEEEEccccCC--CCceeeEEecCCCCCcEEEEEEEE
Q 003259 686 HNALLASSSIGDCVVEYQRLPP--NQMADKWIPLQGVRKGEIHVLITR 731 (835)
Q Consensus 686 ~d~~~~d~~iG~~~i~l~~l~~--~~~~~~w~~L~~~~~G~i~l~l~~ 731 (835)
++.++++++||++.++|+++.. +...+.|++|+ +.|+|++++++
T Consensus 83 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~ 128 (132)
T cd04014 83 DAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIEL 128 (132)
T ss_pred CCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEE
Confidence 9999999999999999999876 56689999998 47999999998
No 53
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.72 E-value=4.3e-17 Score=153.39 Aligned_cols=109 Identities=28% Similarity=0.509 Sum_probs=96.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCccceEEEEEeeC------CceeEEEEEEEeccC-CC
Q 003259 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG------GGECLMVKCYNEEIF-GD 561 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne~f~f~v~~------~~~~L~i~V~d~d~~-~d 561 (835)
++|+|++|+||+.++..|.+||||+++++++.++|+++ ++.||.|||+|.|.+.. ....|.+.|||++.. +|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 47999999999998888999999999999999999999 99999999999999866 367899999999987 79
Q ss_pred ceEEEEEEeccccc--cCCeeeeEEecccC------CCceEEEEE
Q 003259 562 ENMGSARVNLEGLV--EGSVRDIWVPLEKV------NTGELRLQI 598 (835)
Q Consensus 562 ~~IG~~~i~L~~l~--~~~~~~~w~~L~~~------~~G~I~l~l 598 (835)
++||++.++|.++. .+.....||+|.+. ..|+|++++
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 99999999999987 45567899999752 358888876
No 54
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.71 E-value=8.6e-17 Score=149.91 Aligned_cols=100 Identities=27% Similarity=0.394 Sum_probs=93.1
Q ss_pred EEEEEEEEeec---CCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCccceEEEEEeeCCceeEEEEEEEeccC-----
Q 003259 489 KINVTVVEGKD---LMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF----- 559 (835)
Q Consensus 489 ~L~V~V~~a~~---L~~~~~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~----- 559 (835)
.|.|+|++|++ |..++..|.+||||++++|++.+||+++ ++.||.|||+|.|.+.++...|.|+|||++..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence 38999999999 8888989999999999999999999999 99999999999999887777999999999875
Q ss_pred --CCceEEEEEEeccccccCCeeeeEEeccc
Q 003259 560 --GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (835)
Q Consensus 560 --~d~~IG~~~i~L~~l~~~~~~~~w~~L~~ 588 (835)
+|++||++.++|.++..+.....||+|..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS 111 (126)
T ss_pred CCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence 79999999999999998888889999984
No 55
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.71 E-value=9.5e-17 Score=149.81 Aligned_cols=99 Identities=23% Similarity=0.326 Sum_probs=87.3
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEEC--C---eEeeeeeecCCC-CCe
Q 003259 592 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG--D---LKKRTKVIFKTL-NPQ 665 (835)
Q Consensus 592 G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~v~~~t~-nP~ 665 (835)
.+|.++++|. +..|+|+|.|++|+||++.+..+.+||||+|++- + .++||+++++|+ ||+
T Consensus 1 ~el~~sL~Y~--------------p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~ 66 (135)
T cd08692 1 AELQLGTCFQ--------------AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVK 66 (135)
T ss_pred CeEEEEeeec--------------CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCce
Confidence 4789999998 7889999999999999988667778999999982 2 478999999996 699
Q ss_pred eeeEEEeecC----CCcEEEEEEECCCCCCCCeEEEEEEEccc
Q 003259 666 WHQTLEFPDD----GSPLTLHVRDHNALLASSSIGDCVVEYQR 704 (835)
Q Consensus 666 wne~f~f~v~----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~ 704 (835)
|||+|.|+++ +..|.++|||++..+++++||++.++.+.
T Consensus 67 fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 67 WGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDS 109 (135)
T ss_pred ecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCcc
Confidence 9999999986 45789999999999999999999999875
No 56
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.71 E-value=1e-16 Score=152.91 Aligned_cols=110 Identities=27% Similarity=0.467 Sum_probs=95.2
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEEC--C---eEeeeeeecCCCCCee
Q 003259 592 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG--D---LKKRTKVIFKTLNPQW 666 (835)
Q Consensus 592 G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~v~~~t~nP~w 666 (835)
|+|.+++.|. ++.|.|+|+|++|++|+..+..|.+||||+|+++ + .+++|+++++++||+|
T Consensus 2 G~l~~~l~y~--------------~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~w 67 (136)
T cd08402 2 GDICFSLRYV--------------PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYY 67 (136)
T ss_pred cEEEEEeEEc--------------CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcc
Confidence 8999999998 6779999999999999999999999999999994 2 3678999999999999
Q ss_pred eeEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEec
Q 003259 667 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 717 (835)
Q Consensus 667 ne~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L 717 (835)
||+|.|++. ...|.|+|||++.+++|++||++.+++... +....+|+++
T Consensus 68 ne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~ 121 (136)
T cd08402 68 NESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDM 121 (136)
T ss_pred cceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHH
Confidence 999999985 247999999999999999999999999753 3334455554
No 57
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=1.2e-16 Score=149.95 Aligned_cols=116 Identities=31% Similarity=0.395 Sum_probs=100.0
Q ss_pred ceEEEEEEEEeecCCcCC-cCCCCCCEEEEEECC--eEeeeeeecCCCCCeeeeEEEeecC--CCcEEEEEEECCCCCCC
Q 003259 618 NGWIELVIVEARDLVAAD-LRGTSDPYVKVQYGD--LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLAS 692 (835)
Q Consensus 618 ~g~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~--~~~kT~v~~~t~nP~wne~f~f~v~--~~~L~i~V~d~d~~~~d 692 (835)
.|.|+|+|++|++|+..+ ..+.+||||++.+++ ..++|+++.++.||.|||.|.|.+. .+.|.|+|||++..++|
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence 378999999999999765 456799999999987 7899999999999999999999975 67899999999999999
Q ss_pred CeEEEEEEEccccCCCCcee-eEEec--CCCCCcEEEEEEEEEec
Q 003259 693 SSIGDCVVEYQRLPPNQMAD-KWIPL--QGVRKGEIHVLITRKVP 734 (835)
Q Consensus 693 ~~iG~~~i~l~~l~~~~~~~-~w~~L--~~~~~G~i~l~l~~~~p 734 (835)
++||++.+++.++..+.... .|+.+ .++..|+|+++++| .|
T Consensus 81 ~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~-~p 124 (124)
T cd04044 81 KLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRF-FP 124 (124)
T ss_pred ceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEe-CC
Confidence 99999999999997765554 34544 45668999999998 44
No 58
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.71 E-value=1.1e-16 Score=152.24 Aligned_cols=111 Identities=26% Similarity=0.445 Sum_probs=93.5
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEEC--C---eEeeeeeecCCCCCee
Q 003259 592 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG--D---LKKRTKVIFKTLNPQW 666 (835)
Q Consensus 592 G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~v~~~t~nP~w 666 (835)
|+|.++++|. +..+.|+|+|++|++|+..+..|.+||||++++. . .+++|+++++|+||+|
T Consensus 1 G~i~~~l~y~--------------~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~w 66 (135)
T cd08410 1 GELLLSLNYL--------------PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFY 66 (135)
T ss_pred CcEEEEEEEC--------------CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCcc
Confidence 8999999998 6779999999999999999999999999999982 2 3579999999999999
Q ss_pred eeEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEec
Q 003259 667 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 717 (835)
Q Consensus 667 ne~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L 717 (835)
||+|.|.+. ...|.|+|||+|..+++++||++.|+...... ...++|+.+
T Consensus 67 nE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l 121 (135)
T cd08410 67 NESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP-SETNHWRRM 121 (135)
T ss_pred ceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCc-hHHHHHHHH
Confidence 999999984 34699999999999999999999977543322 124555555
No 59
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.71 E-value=1.2e-16 Score=152.13 Aligned_cols=111 Identities=17% Similarity=0.288 Sum_probs=94.6
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECC------eEeeeeeecCCCCCe
Q 003259 592 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFKTLNPQ 665 (835)
Q Consensus 592 G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v~~~t~nP~ 665 (835)
|+|.+++.|. +..+.|.|+|++|+||+..+..|.+||||++++.. .++||+++++++||+
T Consensus 2 ~ei~~sL~Y~--------------~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPv 67 (138)
T cd08408 2 PELLLGLEYN--------------ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPE 67 (138)
T ss_pred CeEEEEeEEc--------------CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCc
Confidence 6899999998 67899999999999999999999999999999942 256999999999999
Q ss_pred eeeEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEec
Q 003259 666 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 717 (835)
Q Consensus 666 wne~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L 717 (835)
|||+|.|++. ...|.|+|||++.++++++||++.+++..... ....+|+.+
T Consensus 68 fnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~ 123 (138)
T cd08408 68 FKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEM 123 (138)
T ss_pred EeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHH
Confidence 9999999985 46899999999999999999999998874421 123455544
No 60
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.70 E-value=2.1e-16 Score=146.44 Aligned_cols=112 Identities=27% Similarity=0.505 Sum_probs=102.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCccceEEEEEeeCC-ceeEEEEEEEeccC-CCceEE
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG 565 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne~f~f~v~~~-~~~L~i~V~d~d~~-~d~~IG 565 (835)
+++|+|++|++|+..+..+.+||||+++++++.++|+++ ++.||.|||+|.|.+... ...|.|+|||++.. ++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 478999999999998888999999999999999999999 999999999999998765 78999999999987 899999
Q ss_pred EEEEeccccccCCeeeeEEecccCCCceEEEEEEEe
Q 003259 566 SARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT 601 (835)
Q Consensus 566 ~~~i~L~~l~~~~~~~~w~~L~~~~~G~I~l~l~~~ 601 (835)
++.++|.++..+.....|++|++. .|+|++.+.|.
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 81 RCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred EEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence 999999999888888999999874 69999998875
No 61
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.70 E-value=8.7e-17 Score=146.19 Aligned_cols=98 Identities=23% Similarity=0.398 Sum_probs=88.8
Q ss_pred EEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC---CCcEEEEEEECCCCCCCCeEE
Q 003259 620 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG 696 (835)
Q Consensus 620 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~---~~~L~i~V~d~d~~~~d~~iG 696 (835)
.|.|+|++|++|+..+..|.+||||++++++++++|+++++|.||+|||.|.|.+. .+.|.|+|+|++. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 37899999999999998999999999999999999999999999999999999986 4679999999986 78999
Q ss_pred EEEEEccccCCC--CceeeEEecCCC
Q 003259 697 DCVVEYQRLPPN--QMADKWIPLQGV 720 (835)
Q Consensus 697 ~~~i~l~~l~~~--~~~~~w~~L~~~ 720 (835)
++.++|.++... ...++||+|.+.
T Consensus 78 ~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 78 SLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEHHHhhccccceeeeeEecCCC
Confidence 999999998654 367999999863
No 62
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.70 E-value=6.8e-17 Score=155.11 Aligned_cols=98 Identities=27% Similarity=0.314 Sum_probs=87.4
Q ss_pred EEEEEEEEeecCCcCCcCCCCCCEEEEEECC-----eEeeeeeecCCCCCeeeeEEEeecC------------------C
Q 003259 620 WIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD------------------G 676 (835)
Q Consensus 620 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~------------------~ 676 (835)
.|+|+|++|++|+. .+|.+||||+|++.+ .+++|+++++|+||+|||+|.|++. .
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 37899999999988 578999999999965 5779999999999999999999873 2
Q ss_pred CcEEEEEEECCCCCCCCeEEEEEEEccccCCC-CceeeEEecCC
Q 003259 677 SPLTLHVRDHNALLASSSIGDCVVEYQRLPPN-QMADKWIPLQG 719 (835)
Q Consensus 677 ~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~-~~~~~w~~L~~ 719 (835)
..|.|+|||++.+++|++||++.|++..+..+ .....||+|+.
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence 46999999999988999999999999999876 56799999964
No 63
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.70 E-value=2.2e-16 Score=147.48 Aligned_cols=114 Identities=32% Similarity=0.529 Sum_probs=102.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeecccc-CCCCCccceEEEEEeeCCceeEEEEEEEeccC-CCceEE
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG 565 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~-~~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~-~d~~IG 565 (835)
+|+|+|++|++|+..+..|.+||||++++++ ..++|+++ ++.||.|||+|.|.+......|.|+|||++.. ++++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 3899999999999988889999999999965 78999999 99999999999999776678899999999988 899999
Q ss_pred EEEEeccccccCCeeeeEEecccCC----CceEEEEEEEee
Q 003259 566 SARVNLEGLVEGSVRDIWVPLEKVN----TGELRLQIEATR 602 (835)
Q Consensus 566 ~~~i~L~~l~~~~~~~~w~~L~~~~----~G~I~l~l~~~~ 602 (835)
++.+++.++..+.....|++|.+.+ .|+|.+.+.+.|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 9999999999888888999997543 599999998863
No 64
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.70 E-value=1.2e-16 Score=148.55 Aligned_cols=113 Identities=22% Similarity=0.401 Sum_probs=100.5
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc--CCCCCccceEEEEEeeCC-ceeEEEEEEEeccCCCceE
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA--HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENM 564 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~~kT~~~--~t~nP~Wne~f~f~v~~~-~~~L~i~V~d~d~~~d~~I 564 (835)
|.|.|+|.+|++|+..+..+.+||||++++++..++|+++ ++.||.|||.|.|.+..+ ...|.|+|||++..++++|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~i 80 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLI 80 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcce
Confidence 4799999999999998888999999999999899999987 478999999999998764 6789999999887678999
Q ss_pred EEEEEeccccccCCeeeeEEecccC--CCceEEEEEEE
Q 003259 565 GSARVNLEGLVEGSVRDIWVPLEKV--NTGELRLQIEA 600 (835)
Q Consensus 565 G~~~i~L~~l~~~~~~~~w~~L~~~--~~G~I~l~l~~ 600 (835)
|++.+++.++..+.....|++|... ..|+|+++++|
T Consensus 81 G~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 9999999998877677899999764 36999999875
No 65
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=1.1e-16 Score=153.92 Aligned_cols=104 Identities=23% Similarity=0.431 Sum_probs=91.6
Q ss_pred EEEEEEEeecCCcCCcCC--------------CCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC----CCcEEEE
Q 003259 621 IELVIVEARDLVAADLRG--------------TSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD----GSPLTLH 682 (835)
Q Consensus 621 L~v~v~~a~~L~~~d~~g--------------~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~----~~~L~i~ 682 (835)
|.|+|++|++|+.+|..+ .+||||+|.+++++.+|+++++++||+|||+|.|++. ...|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999988553 6899999999999999999999999999999999863 4689999
Q ss_pred EEECCCCCCCCeEEEEEEEccccCCCCc-------eeeEEecCCCCCcE
Q 003259 683 VRDHNALLASSSIGDCVVEYQRLPPNQM-------ADKWIPLQGVRKGE 724 (835)
Q Consensus 683 V~d~d~~~~d~~iG~~~i~l~~l~~~~~-------~~~w~~L~~~~~G~ 724 (835)
|||+|..++|++||++.+++.++..... ...|+.|.+..+|.
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~ 130 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREY 130 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccc
Confidence 9999999999999999999998865432 36899998877764
No 66
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.70 E-value=2.1e-16 Score=150.89 Aligned_cols=101 Identities=35% Similarity=0.477 Sum_probs=91.1
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEEC--C---eEeeeeeecCCCCCe
Q 003259 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG--D---LKKRTKVIFKTLNPQ 665 (835)
Q Consensus 591 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~v~~~t~nP~ 665 (835)
.|+|.++++|. +..+.|.|+|++|+||+..+..|.+||||++.+. + .+.+|++++++.||+
T Consensus 1 ~G~l~~sl~y~--------------~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~ 66 (136)
T cd08405 1 RGELLLSLCYN--------------PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPV 66 (136)
T ss_pred CcEEEEEEEEc--------------CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCc
Confidence 38999999998 6779999999999999999999999999999983 2 357999999999999
Q ss_pred eeeEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEcccc
Q 003259 666 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL 705 (835)
Q Consensus 666 wne~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l 705 (835)
|||+|.|.+. ...|.|+|||++.++++++||++.+++...
T Consensus 67 wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 67 FNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred ccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence 9999999975 457999999999999999999999999864
No 67
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.70 E-value=2e-16 Score=147.69 Aligned_cols=113 Identities=30% Similarity=0.552 Sum_probs=101.9
Q ss_pred cEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeEeecccc-CCCCCccceEEEEEeeC-CceeEEEEEEEeccC
Q 003259 488 RKINVTVVEGKDLMPKDK------SGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF 559 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~------~g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne~f~f~v~~-~~~~L~i~V~d~d~~ 559 (835)
|.|+|+|.+|++|+..+. .|.+||||+++++++.++|+++ ++.||.|||+|.|.+.. ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 479999999999987764 3689999999999999999999 99999999999999865 477999999999877
Q ss_pred CCceEEEEEEeccccccCCeeeeEEecccCCCceEEEEEEE
Q 003259 560 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEA 600 (835)
Q Consensus 560 ~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~~~G~I~l~l~~ 600 (835)
++++||.+.+++.++..+.....||+|.+..+|+|+++++|
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 88999999999999988777789999998788999999876
No 68
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.70 E-value=1.1e-16 Score=146.78 Aligned_cols=99 Identities=30% Similarity=0.583 Sum_probs=89.6
Q ss_pred EEEEEEEeecCCcCCc-CCCCCCEEEEEECCeEeeeeeecCCCCCee-eeEEEeecC-----CCcEEEEEEECCCCCCCC
Q 003259 621 IELVIVEARDLVAADL-RGTSDPYVKVQYGDLKKRTKVIFKTLNPQW-HQTLEFPDD-----GSPLTLHVRDHNALLASS 693 (835)
Q Consensus 621 L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~~~~kT~v~~~t~nP~w-ne~f~f~v~-----~~~L~i~V~d~d~~~~d~ 693 (835)
|+|+|++|++|+..+. .|.+||||++++++.++||+++++++||+| ||.|.|.+. ...|.|+|||++.+++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 5799999999999884 789999999999999999999999999999 999999985 267999999999999999
Q ss_pred eEEEEEEEccccCC---CCceeeEEecCC
Q 003259 694 SIGDCVVEYQRLPP---NQMADKWIPLQG 719 (835)
Q Consensus 694 ~iG~~~i~l~~l~~---~~~~~~w~~L~~ 719 (835)
+||++.+++.++.. +...+.||+|..
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999966 456899999853
No 69
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.70 E-value=7.3e-17 Score=153.95 Aligned_cols=112 Identities=28% Similarity=0.394 Sum_probs=98.3
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECC-----eEeeeeeecCCCCCe
Q 003259 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ 665 (835)
Q Consensus 591 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~ 665 (835)
.|+|.++++|. +..+.|.|+|++|++|+..+..|.+||||++++.+ .+.||+++++++||+
T Consensus 1 ~G~l~~~l~y~--------------~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~ 66 (136)
T cd08404 1 RGELLLSLCYQ--------------PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPV 66 (136)
T ss_pred CCeEEEEEEEe--------------CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCc
Confidence 48999999997 56689999999999999999999999999999832 257899999999999
Q ss_pred eeeEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEecC
Q 003259 666 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 718 (835)
Q Consensus 666 wne~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 718 (835)
|||+|.|.+. ...|.|+|||++.++++++||++.+++.. .+....+|++|.
T Consensus 67 w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~ 122 (136)
T cd08404 67 FNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVC 122 (136)
T ss_pred cCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHH
Confidence 9999999985 45689999999999999999999999987 345567888874
No 70
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.69 E-value=2.3e-16 Score=149.51 Aligned_cols=118 Identities=31% Similarity=0.479 Sum_probs=105.7
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECC-----eEeeeeeecCCCCCe
Q 003259 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ 665 (835)
Q Consensus 591 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~ 665 (835)
.|+|++++.|. . +.|+|+|++|++|+..+..+.+||||+|.+.+ ..++|++++++.||.
T Consensus 1 ~g~~~~~~~~~--------------~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~ 64 (131)
T cd04026 1 RGRIYLKISVK--------------D--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPV 64 (131)
T ss_pred CcEEEEEEEEC--------------C--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCC
Confidence 48999999887 2 89999999999999998889999999999953 578999999999999
Q ss_pred eeeEEEeecC----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEecCCCCCcEE
Q 003259 666 WHQTLEFPDD----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEI 725 (835)
Q Consensus 666 wne~f~f~v~----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i 725 (835)
|||+|.|++. ...|.++|||++..+++++||++.++++++... ....||+|.+.+.|+.
T Consensus 65 wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 65 WNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY 127 (131)
T ss_pred ccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence 9999999975 357999999999988999999999999999754 6889999998888864
No 71
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.69 E-value=2.9e-16 Score=149.45 Aligned_cols=110 Identities=35% Similarity=0.469 Sum_probs=94.2
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECC-----eEeeeeeecCCCCCee
Q 003259 592 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW 666 (835)
Q Consensus 592 G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w 666 (835)
|+|.+++.|. +..+.|+|+|++|++|++.+..|.+||||++.+.. .+++|+++++++||+|
T Consensus 1 g~l~~~~~y~--------------~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~w 66 (134)
T cd08403 1 GELMFSLCYL--------------PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTY 66 (134)
T ss_pred CeEEEEEEEc--------------CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcc
Confidence 8999999998 67799999999999999999999999999999842 3679999999999999
Q ss_pred eeEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEec
Q 003259 667 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 717 (835)
Q Consensus 667 ne~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L 717 (835)
||+|.|.+. ...|.|+|||++.++++++||++.+++... +.....|+++
T Consensus 67 ne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~ 120 (134)
T cd08403 67 NEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPNAD--GQGREHWNEM 120 (134)
T ss_pred cceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCCCC--CchHHHHHHH
Confidence 999999975 246999999999999999999999987732 3334455554
No 72
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=4.1e-16 Score=146.99 Aligned_cols=109 Identities=28% Similarity=0.453 Sum_probs=97.7
Q ss_pred EEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEE
Q 003259 625 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCV 699 (835)
Q Consensus 625 v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~ 699 (835)
|++|++|+. ..|.+||||++++++.+++|++++++.||+|||+|.|++. ...|.++|||++..++|++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 679999988 6789999999999999999999999999999999999973 578999999999999999999999
Q ss_pred EEccccCCCCceeeEEecCCC----CCcEEEEEEEEEecCC
Q 003259 700 VEYQRLPPNQMADKWIPLQGV----RKGEIHVLITRKVPEL 736 (835)
Q Consensus 700 i~l~~l~~~~~~~~w~~L~~~----~~G~i~l~l~~~~p~~ 736 (835)
++++++..+.....|++|... .+|+|+++++| .|.+
T Consensus 80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~-~~~~ 119 (127)
T cd08373 80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSY-QPPD 119 (127)
T ss_pred EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEE-eCCC
Confidence 999999888888999999532 36999999999 5543
No 73
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.69 E-value=4.5e-16 Score=146.38 Aligned_cols=112 Identities=24% Similarity=0.340 Sum_probs=98.0
Q ss_pred cceEEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC--CCcEEEEEEECCCCCCCCe
Q 003259 617 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSS 694 (835)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~--~~~L~i~V~d~d~~~~d~~ 694 (835)
+.+.++|+|++|++|...+..|.+||||++.+++++++|++++++.||+|||.|.|.+. ...|.|+|||++..+ |++
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~-d~~ 79 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLC-DEF 79 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCC-CCc
Confidence 35789999999999999999999999999999999999999999999999999999864 567999999999875 899
Q ss_pred EEEEEEEccccCCCCceeeEEecC-------CCCCcEEEEEEEE
Q 003259 695 IGDCVVEYQRLPPNQMADKWIPLQ-------GVRKGEIHVLITR 731 (835)
Q Consensus 695 iG~~~i~l~~l~~~~~~~~w~~L~-------~~~~G~i~l~l~~ 731 (835)
||++.++++.+. ....+|++|+ +...|+|.+++.+
T Consensus 80 lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~ 121 (126)
T cd04046 80 LGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTS 121 (126)
T ss_pred eEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEE
Confidence 999999998754 3456888884 3456999999876
No 74
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.69 E-value=8.9e-17 Score=153.25 Aligned_cols=111 Identities=20% Similarity=0.343 Sum_probs=94.5
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECC-----eEeeeeeecCCCCCee
Q 003259 592 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW 666 (835)
Q Consensus 592 G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w 666 (835)
|+|.+++.|. +..+.|.|+|++|+||+..+ .+.+||||++++.. .+++|++++++.||+|
T Consensus 2 G~i~~sl~y~--------------~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~f 66 (137)
T cd08409 2 GDIQISLTYN--------------PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSF 66 (137)
T ss_pred cEEEEEEEEC--------------CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcc
Confidence 8999999998 66799999999999999988 78899999999843 3679999999999999
Q ss_pred eeEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEec
Q 003259 667 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 717 (835)
Q Consensus 667 ne~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L 717 (835)
||+|.|.++ ...|.|+|||++..+++++||++.++......+...++|..+
T Consensus 67 nE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~ 122 (137)
T cd08409 67 NESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDM 122 (137)
T ss_pred cceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHH
Confidence 999999985 468999999999999999999999986544444444445444
No 75
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.69 E-value=4.2e-16 Score=146.72 Aligned_cols=110 Identities=23% Similarity=0.380 Sum_probs=97.6
Q ss_pred EEEEEEEEeecCCcCCcCCCCCCEEEEEECC---eEeeeeeecCCCCCeeeeEEEeecCC---CcEEEEEEECCCCCCCC
Q 003259 620 WIELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDDG---SPLTLHVRDHNALLASS 693 (835)
Q Consensus 620 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~---~~L~i~V~d~d~~~~d~ 693 (835)
.|+|+|++|++|+..+..|.+||||++.+++ ...+|+++++++||+|||+|.|++.. ..|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 5899999999999999999999999999864 36799999999999999999999863 67999999999998999
Q ss_pred eEEEEEEEccccCC---CCceeeEEecCCCCCcEEEEEEEE
Q 003259 694 SIGDCVVEYQRLPP---NQMADKWIPLQGVRKGEIHVLITR 731 (835)
Q Consensus 694 ~iG~~~i~l~~l~~---~~~~~~w~~L~~~~~G~i~l~l~~ 731 (835)
+||++.++++.+.. +...+.|++|.+ .|+|++++++
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~ 120 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSM 120 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEE
Confidence 99999999987532 446789999985 7999999987
No 76
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.68 E-value=3e-16 Score=146.95 Aligned_cols=109 Identities=22% Similarity=0.379 Sum_probs=94.2
Q ss_pred EEEEEEEeecCCcCCcCCCCCCEEEEEEC-CeEeeeeeecCCCCCeeeeEEEeecC-CCcEEEEEEECCCCCC--CCeEE
Q 003259 621 IELVIVEARDLVAADLRGTSDPYVKVQYG-DLKKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLA--SSSIG 696 (835)
Q Consensus 621 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-~~~~kT~v~~~t~nP~wne~f~f~v~-~~~L~i~V~d~d~~~~--d~~iG 696 (835)
|+|+|++|++|+..+..|.+||||+++++ .+.++|+++++++||.|||+|.|++. ...|.++|||++.+++ |++||
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~l~i~V~d~~~~~~~~d~~lG 81 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGPSSIITIQVFDQKKFKKKDQGFLG 81 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCCCCEEEEEEEECCCCCCCCCceEe
Confidence 78999999999999999999999999996 67889999999999999999999986 6789999999999875 58999
Q ss_pred EEEEEccccCCCC-ceeeEEecCCC-------CCcEEEEEE
Q 003259 697 DCVVEYQRLPPNQ-MADKWIPLQGV-------RKGEIHVLI 729 (835)
Q Consensus 697 ~~~i~l~~l~~~~-~~~~w~~L~~~-------~~G~i~l~l 729 (835)
++.++++++.... ....|++|... ..|+|.+++
T Consensus 82 ~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 82 CVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999986443 44789999432 258887765
No 77
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.68 E-value=6.4e-16 Score=146.96 Aligned_cols=113 Identities=23% Similarity=0.492 Sum_probs=101.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCccceEEEEEeeCC-ceeEEEEEEEeccC-CCceE
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENM 564 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne~f~f~v~~~-~~~L~i~V~d~d~~-~d~~I 564 (835)
|.|+|+|++|++|+..+..|.+||||+++++++.++|+++ ++.||.|||+|.|.+.+. ...|.|+|||++.. +|++|
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~l 94 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFL 94 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCee
Confidence 4999999999999998889999999999999999999999 999999999999998664 57899999999987 78999
Q ss_pred EEEEEecccccc-----CCeeeeEEecccCCCceEEEEEEE
Q 003259 565 GSARVNLEGLVE-----GSVRDIWVPLEKVNTGELRLQIEA 600 (835)
Q Consensus 565 G~~~i~L~~l~~-----~~~~~~w~~L~~~~~G~I~l~l~~ 600 (835)
|++.+++.++.. ......|.++.+...|+|++++.+
T Consensus 95 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 95 GRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred EEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 999999999986 234457888888888999999865
No 78
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.68 E-value=2.5e-16 Score=143.48 Aligned_cols=90 Identities=22% Similarity=0.250 Sum_probs=80.8
Q ss_pred eEEEEEEEEeecCCcCCcC----CCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC----CCcEEEEEEECCCCC
Q 003259 619 GWIELVIVEARDLVAADLR----GTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD----GSPLTLHVRDHNALL 690 (835)
Q Consensus 619 g~L~v~v~~a~~L~~~d~~----g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~----~~~L~i~V~d~d~~~ 690 (835)
|.|.|+|++|++|+..+.. +.+||||+++++++++||+++++++||+|||.|.|++. ...|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 6899999999999987632 35899999999999999999999999999999999973 347999999999999
Q ss_pred CCCeEEEEEEEccccCCC
Q 003259 691 ASSSIGDCVVEYQRLPPN 708 (835)
Q Consensus 691 ~d~~iG~~~i~l~~l~~~ 708 (835)
+|++||++.++|+++..+
T Consensus 81 ~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 81 FNDYVATGSLSVQELLNA 98 (108)
T ss_pred CCcceEEEEEEHHHHHhh
Confidence 999999999999998654
No 79
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.68 E-value=5e-16 Score=147.64 Aligned_cols=110 Identities=22% Similarity=0.327 Sum_probs=95.6
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECC-----eEeeeeeecCCCCCeee
Q 003259 593 ELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWH 667 (835)
Q Consensus 593 ~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wn 667 (835)
+|.+++.|. +..+.|.|+|++|++|+..+..|.+||||++++.+ .+.+|+++++++||+||
T Consensus 1 ~i~~~l~y~--------------~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wn 66 (133)
T cd08384 1 KILVSLMYN--------------TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFN 66 (133)
T ss_pred CEEEEEEEc--------------CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcc
Confidence 477888887 67799999999999999999999999999999943 46799999999999999
Q ss_pred eEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEecC
Q 003259 668 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 718 (835)
Q Consensus 668 e~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 718 (835)
|+|.|++. ...|.|+|||++..+++++||++.++++. .+....+|+++.
T Consensus 67 e~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l 120 (133)
T cd08384 67 EEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCL 120 (133)
T ss_pred cEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHH
Confidence 99999975 35799999999999999999999999985 334456787764
No 80
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.67 E-value=9e-16 Score=147.49 Aligned_cols=116 Identities=20% Similarity=0.291 Sum_probs=96.0
Q ss_pred EEEEEEeec--CCcCCcCCCCCCEEEEEE-----CCeEeeeeeecCCCCCeeeeEEEeecCC-----------CcEEEEE
Q 003259 622 ELVIVEARD--LVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEFPDDG-----------SPLTLHV 683 (835)
Q Consensus 622 ~v~v~~a~~--L~~~d~~g~~DPyv~v~~-----~~~~~kT~v~~~t~nP~wne~f~f~v~~-----------~~L~i~V 683 (835)
.++|..|++ |+..+..+.+||||++++ +.++.||+++++|+||+|||+|.|.+.. ..|.++|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 445555555 778888889999999997 2368899999999999999999999853 3699999
Q ss_pred EECCCC-CCCCeEEEEEEEccccCCCCceeeEEecC-C--CCCcEEEEEEEEEecCCc
Q 003259 684 RDHNAL-LASSSIGDCVVEYQRLPPNQMADKWIPLQ-G--VRKGEIHVLITRKVPELD 737 (835)
Q Consensus 684 ~d~d~~-~~d~~iG~~~i~l~~l~~~~~~~~w~~L~-~--~~~G~i~l~l~~~~p~~~ 737 (835)
||++.+ .+|++||++.++|+.+..+.....|++|. | ..+|+|++++.++.|-.+
T Consensus 85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~p~~~ 142 (155)
T cd08690 85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLREPLTG 142 (155)
T ss_pred EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecCCCcc
Confidence 999986 57999999999999998777778899985 4 346999999999765443
No 81
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.67 E-value=6.6e-16 Score=145.46 Aligned_cols=108 Identities=35% Similarity=0.570 Sum_probs=94.5
Q ss_pred EEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC--CCcEEEEEEECCCC--------
Q 003259 620 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNAL-------- 689 (835)
Q Consensus 620 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~--~~~L~i~V~d~d~~-------- 689 (835)
.|+|+|++|++|+..|..|.+||||++++++..++|+++.+|+||.|||.|.|.+. ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 68999999999999999999999999999999999999999999999999999874 46899999999853
Q ss_pred ---CCCCeEEEEEEEccccCCCCceeeEEecCC-----CCCcEEEEEE
Q 003259 690 ---LASSSIGDCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLI 729 (835)
Q Consensus 690 ---~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~l 729 (835)
+.+++||++.+++..+.. ....||+|.. ..+|+|++++
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence 568999999999998753 4679999974 2368888764
No 82
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.67 E-value=6e-16 Score=146.06 Aligned_cols=113 Identities=31% Similarity=0.517 Sum_probs=100.7
Q ss_pred cEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeEeecccc-CCCCCccceEEEEEeeC-CceeEEEEEEEeccC-CCc
Q 003259 488 RKINVTVVEGKDLMPKDK--SGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDE 562 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~--~g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne~f~f~v~~-~~~~L~i~V~d~d~~-~d~ 562 (835)
|.|+|+|++|++|+..+. .+.+||||+++++++.++|+++ ++.||.|||+|+|.+.. ....|.|+|||++.. +++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 489999999999998887 8899999999999999999999 99999999999999876 477999999999987 889
Q ss_pred eEEEEEEecccccc---CCeeeeEEecccC-------CCceEEEEEEE
Q 003259 563 NMGSARVNLEGLVE---GSVRDIWVPLEKV-------NTGELRLQIEA 600 (835)
Q Consensus 563 ~IG~~~i~L~~l~~---~~~~~~w~~L~~~-------~~G~I~l~l~~ 600 (835)
+||++.+++.++.. ......||+|.+. .+|+|++++.|
T Consensus 81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 99999999999873 3346799999865 37999999876
No 83
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.67 E-value=2.6e-16 Score=144.58 Aligned_cols=97 Identities=29% Similarity=0.497 Sum_probs=86.9
Q ss_pred eEEEEEEEEeecCCcCCcC-CCCCCEEEEEECC---eEeeeeeecCCCCCeeeeEEEeecC------CCcEEEEEEECCC
Q 003259 619 GWIELVIVEARDLVAADLR-GTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHNA 688 (835)
Q Consensus 619 g~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~------~~~L~i~V~d~d~ 688 (835)
|.|+|+|++|++|+..+.. |.+||||++++.+ ..++|+++++|+||+|||.|.|.+. ...|.++|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999987 8999999999843 4689999999999999999999863 3579999999999
Q ss_pred CCCCCeEEEEEEEccccCCCCceeeEEecC
Q 003259 689 LLASSSIGDCVVEYQRLPPNQMADKWIPLQ 718 (835)
Q Consensus 689 ~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 718 (835)
+++|++||++.+++.++. ....|++++
T Consensus 81 ~~~dd~lG~~~i~l~~l~---~~~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELI---EDRNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHh---cCCCCCccc
Confidence 999999999999999997 356888875
No 84
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.67 E-value=7.9e-16 Score=141.53 Aligned_cols=104 Identities=16% Similarity=0.332 Sum_probs=87.7
Q ss_pred eEEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC--CCcEEEEEEECCCCCCCCeEE
Q 003259 619 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG 696 (835)
Q Consensus 619 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~--~~~L~i~V~d~d~~~~d~~iG 696 (835)
+.|.|.|++|++|+..+ ..||||++.+++++.+|+++++ .||.|||.|.|.+. ...|.|+|||+|.+ .|++||
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG 76 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG 76 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence 68999999999997654 4599999999999999999988 49999999999975 45699999999965 799999
Q ss_pred EEEEEccccCCCCce--eeEEecCC---CCCcEEEE
Q 003259 697 DCVVEYQRLPPNQMA--DKWIPLQG---VRKGEIHV 727 (835)
Q Consensus 697 ~~~i~l~~l~~~~~~--~~w~~L~~---~~~G~i~l 727 (835)
++.++|+++..+... .+||+|+. .+.|++.-
T Consensus 77 ~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~~~ 112 (127)
T cd08394 77 TVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQIVG 112 (127)
T ss_pred EEEEEhHHcccCCCCCCCccEecChHHhccCCeEec
Confidence 999999999755444 89999974 24465543
No 85
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.67 E-value=4.6e-16 Score=147.78 Aligned_cols=103 Identities=28% Similarity=0.413 Sum_probs=93.1
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEEC-------CeEeeeeeecCCCC
Q 003259 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-------DLKKRTKVIFKTLN 663 (835)
Q Consensus 591 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-------~~~~kT~v~~~t~n 663 (835)
.|+|.++++|. ...+.|+|+|++|++|+..+..|.+||||+|++. ..+++|+++++|+|
T Consensus 2 ~G~l~~~l~y~--------------~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~n 67 (133)
T cd04009 2 YGVLTVKAYYR--------------ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLF 67 (133)
T ss_pred ceEEEEEEEEc--------------CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCC
Confidence 59999999998 5668999999999999999988999999999995 24789999999999
Q ss_pred CeeeeEEEeecC-------CCcEEEEEEECCCCCCCCeEEEEEEEccccCC
Q 003259 664 PQWHQTLEFPDD-------GSPLTLHVRDHNALLASSSIGDCVVEYQRLPP 707 (835)
Q Consensus 664 P~wne~f~f~v~-------~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~ 707 (835)
|+|||+|.|++. ...|.|+|||++.++++++||++.++|+++..
T Consensus 68 P~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 68 PLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred CccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 999999999974 35799999999999999999999999998853
No 86
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.67 E-value=8.4e-16 Score=143.11 Aligned_cols=111 Identities=23% Similarity=0.337 Sum_probs=100.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeecccc-CCCCCccceEEEEEeeCC-ceeEEEEEEEeccCCCceE
Q 003259 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENM 564 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~~g~~dpyv~v~lg---~~~~kT~~~-~t~nP~Wne~f~f~v~~~-~~~L~i~V~d~d~~~d~~I 564 (835)
|.|+|++|++|+..+..+.+||||+++++ ...++|+++ ++.||.|||+|.|.+... ...|.|+|||++..++++|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i 81 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL 81 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence 78999999999988888899999999994 467899999 999999999999987654 5579999999987788999
Q ss_pred EEEEEeccccccCCeeeeEEecccCCCceEEEEEEE
Q 003259 565 GSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEA 600 (835)
Q Consensus 565 G~~~i~L~~l~~~~~~~~w~~L~~~~~G~I~l~l~~ 600 (835)
|++.+++.++..+.....|++|.+.++|++++++..
T Consensus 82 G~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 82 GTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred EEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 999999999998888899999998888999998864
No 87
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.66 E-value=9.7e-16 Score=147.98 Aligned_cols=112 Identities=28% Similarity=0.447 Sum_probs=98.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-C-CCCCccceEEEEEeeCC-ceeEEEEEEEeccC-CCceEE
Q 003259 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG 565 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~~kT~~~-~-t~nP~Wne~f~f~v~~~-~~~L~i~V~d~d~~-~d~~IG 565 (835)
|.|+|++|++|+..+..|.+||||+++++++.++|+++ + +.||.|||.|+|.+.++ ...+.|+|+|++.. ++++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 89999999999999999999999999999999999999 6 69999999999998765 56899999999877 899999
Q ss_pred EEEEeccccccC----CeeeeEEecccCC-----------CceEEEEEEEe
Q 003259 566 SARVNLEGLVEG----SVRDIWVPLEKVN-----------TGELRLQIEAT 601 (835)
Q Consensus 566 ~~~i~L~~l~~~----~~~~~w~~L~~~~-----------~G~I~l~l~~~ 601 (835)
++.++|.++..+ .....||+|.+.. .|+|++++.+.
T Consensus 82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred EEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 999999998753 3457999998643 38999999876
No 88
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.66 E-value=1e-15 Score=142.74 Aligned_cols=111 Identities=23% Similarity=0.399 Sum_probs=97.3
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-Eeecccc-CCCCCccceEEEEEeeCCceeEEEEEEEeccC-CCceEE
Q 003259 490 INVTVVEGKDLMPKD-KSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG 565 (835)
Q Consensus 490 L~V~V~~a~~L~~~~-~~g~~dpyv~v~lg~~-~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~-~d~~IG 565 (835)
|.|+|.+|+||+..+ ..|.+||||.++++++ .++|+++ ++.||.|||+|.|.+......|.|.|||++.. ++++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 789999999998763 4578999999999754 7899999 99999999999999876667999999999988 899999
Q ss_pred EEEEeccccccCCeeeeEEecccCC-----CceEEEEEEE
Q 003259 566 SARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEA 600 (835)
Q Consensus 566 ~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~~ 600 (835)
.+.++++++..+...+.||+|.... .|+|++++.+
T Consensus 82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 9999999998777778999998632 6999998753
No 89
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.66 E-value=8.8e-16 Score=144.71 Aligned_cols=112 Identities=33% Similarity=0.479 Sum_probs=99.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCccceEEEEEeeCC----ceeEEEEEEEeccC--CCc
Q 003259 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYNEEIF--GDE 562 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne~f~f~v~~~----~~~L~i~V~d~d~~--~d~ 562 (835)
|.|+|++|++|...+..|.+||||+++++++.++|+++ ++.||.|||.|.|.+..+ ...|.|.|||++.. +++
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~ 81 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRS 81 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCC
Confidence 89999999999988888999999999999999999999 999999999999997653 35799999998876 689
Q ss_pred eEEEEEEeccccc-cCCeeeeEEecccC-----CCceEEEEEEEe
Q 003259 563 NMGSARVNLEGLV-EGSVRDIWVPLEKV-----NTGELRLQIEAT 601 (835)
Q Consensus 563 ~IG~~~i~L~~l~-~~~~~~~w~~L~~~-----~~G~I~l~l~~~ 601 (835)
+||++.+++.++. .+.....||+|+.. .+|+|.+++.+.
T Consensus 82 ~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 82 FLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred eeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 9999999999997 45567899999864 379999988764
No 90
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.66 E-value=8.8e-16 Score=141.09 Aligned_cols=98 Identities=28% Similarity=0.378 Sum_probs=87.8
Q ss_pred ceEEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC-------CCcEEEEEEECCCCC
Q 003259 618 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD-------GSPLTLHVRDHNALL 690 (835)
Q Consensus 618 ~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~-------~~~L~i~V~d~d~~~ 690 (835)
...|+|+|++|++|+ .|.+||||++.+++++++|+++++++||+|||+|.|.+. +..|.|+|||++.++
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~ 78 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR 78 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence 467999999999998 578999999999999999999999999999999999963 357999999999999
Q ss_pred CCCeEEEEEEEccccCCC---CceeeEEecCC
Q 003259 691 ASSSIGDCVVEYQRLPPN---QMADKWIPLQG 719 (835)
Q Consensus 691 ~d~~iG~~~i~l~~l~~~---~~~~~w~~L~~ 719 (835)
++++||++.++++++..+ ....+|++|.+
T Consensus 79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 999999999999998554 34689999864
No 91
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.65 E-value=2.8e-15 Score=143.63 Aligned_cols=142 Identities=25% Similarity=0.428 Sum_probs=108.8
Q ss_pred eEEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC--CCcEEEEEEECCCCCCCCeEE
Q 003259 619 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG 696 (835)
Q Consensus 619 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~--~~~L~i~V~d~d~~~~d~~iG 696 (835)
|.|+|+|++|++|+..+. +.+||||++.+++++.+|+++++++||+|||.|.|.+. ...|.|+|||++.+++|++||
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG 80 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG 80 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence 789999999999998887 89999999999999999999999999999999999975 567999999999999999999
Q ss_pred EEEEEccccCCCCceeeEEecCCCCCcEEEEEEEEEecCCcccccCCCCCCcceeEEccccchhheeeeccccCCC
Q 003259 697 DCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKVPELDKRTSIDSDSSSTRAHKISGQMKQMMVKFQSLIDDD 772 (835)
Q Consensus 697 ~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~l~~~~p~~~~~~~~~~~~p~~k~~~~~~~~r~~l~k~~t~~~~~ 772 (835)
++.+++..+....... + +.+...|...- ++ .|+.++.. .....+....+.+.|.+.-+...++.|
T Consensus 81 ~a~i~l~~l~~~~~~~-~--~~~~~~~~~~~--~~-~~~~~~~~-----~~~~~~~~~~g~~~~~~~l~l~~~~~g 145 (145)
T cd04038 81 EAEIDLEPLVEAAKLD-H--LRDTPGGTQIK--KV-LPSVENCL-----ASESHITWKDGKIVQDLVLKLRNVESG 145 (145)
T ss_pred EEEEEHHHhhhhhhhh-c--cccCCCCEEEE--EE-ecCCCceE-----eccceEEEECCEEEEEEEEEecccccC
Confidence 9999999886543222 1 33434455322 23 45443332 223445666777777777666555543
No 92
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.65 E-value=7.4e-16 Score=146.64 Aligned_cols=114 Identities=29% Similarity=0.434 Sum_probs=100.7
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECC-----eEeeeeeecCCCCCee
Q 003259 592 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW 666 (835)
Q Consensus 592 G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w 666 (835)
|+|.++++|. +..+.|.|.|++|++|+..+..+.+||||++++.+ .+++|+++.++.||.|
T Consensus 1 G~i~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~w 66 (134)
T cd00276 1 GELLLSLSYL--------------PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVF 66 (134)
T ss_pred CeEEEEEEee--------------CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCee
Confidence 8999999998 56689999999999999999889999999999954 2679999999999999
Q ss_pred eeEEEeecC-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEecCCCC
Q 003259 667 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR 721 (835)
Q Consensus 667 ne~f~f~v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~ 721 (835)
||+|.|.+. ...|.|+|||++..+++++||++.+++++ .+...++|++|....
T Consensus 67 ne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~ 124 (134)
T cd00276 67 NEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASP 124 (134)
T ss_pred eeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence 999999985 36799999999998899999999999998 555678888886543
No 93
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.64 E-value=2.9e-15 Score=146.19 Aligned_cols=114 Identities=25% Similarity=0.444 Sum_probs=99.5
Q ss_pred cEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECC-eEeecccc-CCCCCccc
Q 003259 488 RKINVTVVEGKDLMPKD------------------------------KSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWN 535 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~------------------------------~~g~~dpyv~v~lg~-~~~kT~~~-~t~nP~Wn 535 (835)
|.|.|+|.+|++|+.+| ..|.+||||++++++ +..+|+++ ++.||.||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 58999999999999876 346789999999976 45799999 99999999
Q ss_pred eEEEEEeeCCceeEEEEEEEeccCCCceEEEEEEeccccccCCeeeeEEecccC------CCceEEEEEEEe
Q 003259 536 QKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEAT 601 (835)
Q Consensus 536 e~f~f~v~~~~~~L~i~V~d~d~~~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~I~l~l~~~ 601 (835)
|+|.|.+....+.|.|.|+|++..++++||.+.++++++..+...+.|++|.+. ..|+|++++.|.
T Consensus 87 E~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 87 ESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred eEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 999999877777899999999887789999999999999988888899999652 257999998873
No 94
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.63 E-value=1.6e-15 Score=142.24 Aligned_cols=102 Identities=24% Similarity=0.432 Sum_probs=93.4
Q ss_pred eEEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecC-CCCCeeeeEEEeecCC------CcEEEEEEECCCCCC
Q 003259 619 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK-TLNPQWHQTLEFPDDG------SPLTLHVRDHNALLA 691 (835)
Q Consensus 619 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~------~~L~i~V~d~d~~~~ 691 (835)
|.|+|+|++|++|+..+..+.+||||++.+++..++|+++.+ +.||+|||.|.|.+.. ..|.|+|||++.+++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 689999999999999998899999999999999999999885 9999999999999752 579999999999999
Q ss_pred CCeEEEEEEEccccCCCCceeeEEecCCC
Q 003259 692 SSSIGDCVVEYQRLPPNQMADKWIPLQGV 720 (835)
Q Consensus 692 d~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 720 (835)
+++||++.+++.++..+...+.|++|...
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 99999999999999887788999999863
No 95
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.63 E-value=3.2e-15 Score=139.53 Aligned_cols=97 Identities=24% Similarity=0.374 Sum_probs=87.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCccceEEEEEeeC----CceeEEEEEEEecc
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEI 558 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~Wne~f~f~v~~----~~~~L~i~V~d~d~ 558 (835)
.|.|+|++|++|+..+ .+.+||||++++. ..+++|+++ ++.||.|||+|.|.+.. ....|.|+|||++.
T Consensus 14 ~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~ 92 (122)
T cd08381 14 TLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS 92 (122)
T ss_pred EEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC
Confidence 7999999999999998 8999999999994 357899999 99999999999998622 36789999999998
Q ss_pred C-CCceEEEEEEeccccccCCeeeeEEec
Q 003259 559 F-GDENMGSARVNLEGLVEGSVRDIWVPL 586 (835)
Q Consensus 559 ~-~d~~IG~~~i~L~~l~~~~~~~~w~~L 586 (835)
. ++++||++.++|.++..+.....||+|
T Consensus 93 ~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 93 LVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CcCCcEEEEEEEeccccccCCCccceEEC
Confidence 8 799999999999999887777899987
No 96
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.63 E-value=1.3e-15 Score=143.16 Aligned_cols=108 Identities=29% Similarity=0.353 Sum_probs=94.3
Q ss_pred EEEEEEEEeecCCcCCcCCCCCCEEEEEECC-eEeeeeeec-CCCCCeeeeEEEeecC-------CCcEEEEEEECCCCC
Q 003259 620 WIELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIF-KTLNPQWHQTLEFPDD-------GSPLTLHVRDHNALL 690 (835)
Q Consensus 620 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~-~t~nP~wne~f~f~v~-------~~~L~i~V~d~d~~~ 690 (835)
.|+|+|++|++|+..+..+.+||||+|++++ .+++|+++. ++.||.|||.|.|.+. ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4789999999999999889999999999988 889999986 5899999999999975 257999999999988
Q ss_pred CCCeEEEEEEEccccCCCCc-----eeeEEecC---CCCCcEEEE
Q 003259 691 ASSSIGDCVVEYQRLPPNQM-----ADKWIPLQ---GVRKGEIHV 727 (835)
Q Consensus 691 ~d~~iG~~~i~l~~l~~~~~-----~~~w~~L~---~~~~G~i~l 727 (835)
+|++||++.+++.++..+.. ...||+|. |+.+|+|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 99999999999999865543 47899995 456788874
No 97
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=3.5e-15 Score=138.89 Aligned_cols=107 Identities=29% Similarity=0.370 Sum_probs=94.3
Q ss_pred eEEEEEEEEeecCCcCCcCCCCCCEEEEEECC-eEeeeeeecCCCCCeeeeEEEeecC--CCcEEEEEEECCCCCCCCeE
Q 003259 619 GWIELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSI 695 (835)
Q Consensus 619 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~v~--~~~L~i~V~d~d~~~~d~~i 695 (835)
|.|+|+|++|++|+..+..|.+||||++++++ ...+|++++++.||+|||.|.|++. .+.|.|+|||++.+++|++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 68999999999999999899999999999977 5789999999999999999999874 47899999999999999999
Q ss_pred EEEEEEccccCCCCceeeEEecCCCCCcEEE
Q 003259 696 GDCVVEYQRLPPNQMADKWIPLQGVRKGEIH 726 (835)
Q Consensus 696 G~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~ 726 (835)
|++.+++.++..+ ..+.||.|-+..++.+.
T Consensus 81 G~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~ 110 (120)
T cd04045 81 GSVEINVSDLIKK-NEDGKYVEYDDEEERLK 110 (120)
T ss_pred eEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence 9999999999776 56788887655555443
No 98
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.63 E-value=3.1e-15 Score=140.70 Aligned_cols=111 Identities=17% Similarity=0.316 Sum_probs=98.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC--CeEeecccc-CCCCCccceEEEEEeeCCceeEEEEEEEeccC-CCceEE
Q 003259 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYG--KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG 565 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~~g~~dpyv~v~lg--~~~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~-~d~~IG 565 (835)
|.|+|++|++|+. ..|.+||||+++++ .+.++|+++ ++.||.|||.|.|.+......|.|+|||++.. ++++||
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence 5799999999987 67899999999996 467899999 99999999999999866577899999999987 799999
Q ss_pred EEEEeccccccCCeeeeEEecccC------CCceEEEEEEEee
Q 003259 566 SARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEATR 602 (835)
Q Consensus 566 ~~~i~L~~l~~~~~~~~w~~L~~~------~~G~I~l~l~~~~ 602 (835)
++.+++.++........|++|.+. ..|+|.+++.|.+
T Consensus 79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 999999999988877899999754 3799999999984
No 99
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.63 E-value=5.6e-15 Score=138.42 Aligned_cols=111 Identities=32% Similarity=0.445 Sum_probs=96.7
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEEC-----CeEeeeeeecCCCCCe
Q 003259 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQ 665 (835)
Q Consensus 591 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~ 665 (835)
.|+|.+++.|. +..+.|+|+|++|++|+..+..+.+||||++.+. ..+.+|+++++++||+
T Consensus 1 ~G~~~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~ 66 (123)
T cd04035 1 LGTLEFTLLYD--------------PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPE 66 (123)
T ss_pred CcEEEEEEEEe--------------CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCC
Confidence 38999999998 5678999999999999999988999999999983 2468999999999999
Q ss_pred eeeEEEee-cC-----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEe
Q 003259 666 WHQTLEFP-DD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIP 716 (835)
Q Consensus 666 wne~f~f~-v~-----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~ 716 (835)
|||.|.|. +. ...|.++|||++.+ ++++||++.++++++..+.....|+.
T Consensus 67 Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 67 FNETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred ccceEEEcCCCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 99999996 32 46899999999988 89999999999999987766655554
No 100
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.63 E-value=8.3e-16 Score=145.10 Aligned_cols=93 Identities=16% Similarity=0.363 Sum_probs=85.0
Q ss_pred cccEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCcCeEEEEEecce-eeeeccCCCCCCcccceeEEEE
Q 003259 293 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL-TRRTDARPGSDPRWDSMFNMVL 371 (835)
Q Consensus 293 ~~GvL~V~V~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~~~~dpyv~v~~g~~-~~t~~i~~~~nP~W~etf~~~v 371 (835)
..|.|+|+|++|.||..+|+.|+| ||||.+++|.+ .+|++++++.||+|||.|.|.+
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sS----------------------DPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v 61 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSS----------------------DPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTV 61 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCC----------------------CCeEEEEECCeeeeeeeecCCCCCcccceEEEEe
Confidence 359999999999999999987765 99999999855 5678899999999999999999
Q ss_pred EcCCceEEEEEEEeCCCCCCcceeEEEEEecccccCC
Q 003259 372 HEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 408 (835)
Q Consensus 372 ~~~~~~L~~~v~d~~~~~~kdd~LG~~~i~L~~L~~~ 408 (835)
.+....|.+.|||+|. ..+||++|.|+|+|+.+...
T Consensus 62 ~d~~~~lkv~VyD~D~-fs~dD~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 62 KDPNTPLKVTVYDKDT-FSSDDFMGEATIPLKPLLEA 97 (168)
T ss_pred cCCCceEEEEEEeCCC-CCcccccceeeeccHHHHHH
Confidence 9999999999999998 78999999999999988754
No 101
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.63 E-value=2.1e-15 Score=145.22 Aligned_cols=100 Identities=30% Similarity=0.488 Sum_probs=88.9
Q ss_pred CCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECC-----------------------------eEeeeeeecCCCC
Q 003259 613 NIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----------------------------LKKRTKVIFKTLN 663 (835)
Q Consensus 613 ~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----------------------------~~~kT~v~~~t~n 663 (835)
...++.+.|+|+|++|++|...|..|.+||||++.+++ ..++|+++++|+|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 35688999999999999999999999999999999853 1368999999999
Q ss_pred CeeeeEEEeecC---CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEec
Q 003259 664 PQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 717 (835)
Q Consensus 664 P~wne~f~f~v~---~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L 717 (835)
|+|||+|.|++. ...|.|+|||++ +++||++.++++++.. ...+.||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999985 468999999998 7899999999999974 457999987
No 102
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.62 E-value=6.7e-15 Score=138.32 Aligned_cols=111 Identities=25% Similarity=0.464 Sum_probs=95.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeeccccCCCCCccceEEEEEeeCC-ceeEEEEEEEeccC-CCceEE
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTAHSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG 565 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~-~~~kT~~~~t~nP~Wne~f~f~v~~~-~~~L~i~V~d~d~~-~d~~IG 565 (835)
.|+|+|++|+||+.. +.+||||++++++ +..+|++.++.||.|||+|.|.+..+ ...+.|.|||++.. ++++||
T Consensus 5 ~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG 81 (126)
T cd08400 5 SLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVREGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIA 81 (126)
T ss_pred EEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecCCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEE
Confidence 699999999999864 4789999999976 45788866778999999999986554 35789999999887 899999
Q ss_pred EEEEeccccccCCeeeeEEecccCC------CceEEEEEEEee
Q 003259 566 SARVNLEGLVEGSVRDIWVPLEKVN------TGELRLQIEATR 602 (835)
Q Consensus 566 ~~~i~L~~l~~~~~~~~w~~L~~~~------~G~I~l~l~~~~ 602 (835)
.+.++|.++..+.....||+|.+.. .|+|++++.|.+
T Consensus 82 ~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 82 EVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 9999999998888788999997642 499999999974
No 103
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.62 E-value=3.2e-15 Score=135.85 Aligned_cols=98 Identities=22% Similarity=0.376 Sum_probs=89.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCccceEEEEEeeCC-ceeEEEEEEEeccCCCceEEEE
Q 003259 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENMGSA 567 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne~f~f~v~~~-~~~L~i~V~d~d~~~d~~IG~~ 567 (835)
|.|+|++|++|+..+..+.+||||+++++++.++|+++ ++.||.|||.|.|.+..+ ...|.|+|+|++. +++||++
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~ 79 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSL 79 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEE
Confidence 78999999999988888999999999999999999999 999999999999998874 6789999999886 8899999
Q ss_pred EEeccccccCC--eeeeEEecccC
Q 003259 568 RVNLEGLVEGS--VRDIWVPLEKV 589 (835)
Q Consensus 568 ~i~L~~l~~~~--~~~~w~~L~~~ 589 (835)
.++|.++.... ..+.||+|.+.
T Consensus 80 ~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 80 TLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEHHHhhccccceeeeeEecCCC
Confidence 99999998654 57899999864
No 104
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.62 E-value=6.1e-15 Score=138.37 Aligned_cols=100 Identities=23% Similarity=0.444 Sum_probs=90.0
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--C-CeEeecccc-CCCCCccceEEEEEeeCC---ceeEEEEEEEeccC-
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--G-KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF- 559 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l--g-~~~~kT~~~-~t~nP~Wne~f~f~v~~~---~~~L~i~V~d~d~~- 559 (835)
+.|.|+|++|++|+..+..|.+||||++++ + ...++|+++ ++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 16 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~ 95 (124)
T cd08387 16 GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFS 95 (124)
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCC
Confidence 389999999999999898899999999999 3 467999999 999999999999986653 56899999999887
Q ss_pred CCceEEEEEEeccccccCCeeeeEEecc
Q 003259 560 GDENMGSARVNLEGLVEGSVRDIWVPLE 587 (835)
Q Consensus 560 ~d~~IG~~~i~L~~l~~~~~~~~w~~L~ 587 (835)
++++||++.+++.++..+.....||+|.
T Consensus 96 ~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 96 RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCceeEEEEEecccccCCCCcceEEECc
Confidence 7999999999999998777888999985
No 105
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.62 E-value=4.5e-15 Score=139.27 Aligned_cols=99 Identities=21% Similarity=0.378 Sum_probs=87.3
Q ss_pred EEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEeecccc-CCCCCccceEEEEEeeC---CceeEEEEEEEecc
Q 003259 489 KINVTVVEGKDLMPKDKS-GKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEI 558 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~-g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~Wne~f~f~v~~---~~~~L~i~V~d~d~ 558 (835)
.|.|+|++|+||+.++.. |.+||||++++. ..+++|+++ ++.||.|||+|.|.+.. ....|.|.|||++.
T Consensus 16 ~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd08393 16 ELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS 95 (125)
T ss_pred EEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC
Confidence 799999999999998875 899999999992 246899999 99999999999999754 35689999999998
Q ss_pred C-CCceEEEEEEeccccccCCeeeeEEecc
Q 003259 559 F-GDENMGSARVNLEGLVEGSVRDIWVPLE 587 (835)
Q Consensus 559 ~-~d~~IG~~~i~L~~l~~~~~~~~w~~L~ 587 (835)
. ++++||++.++|.++..+.....||+|.
T Consensus 96 ~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 96 LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 7 8899999999999998777778899874
No 106
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.62 E-value=4e-15 Score=138.67 Aligned_cols=107 Identities=25% Similarity=0.418 Sum_probs=94.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCccceEEEEEeeC-CceeEEEEEEEeccCCCceEEEE
Q 003259 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIFGDENMGSA 567 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne~f~f~v~~-~~~~L~i~V~d~d~~~d~~IG~~ 567 (835)
|.|+|++|++|+.. .+||||+++++++..+|+++ ++.||.|||+|+|.+.. ....|.++|||++..++++||++
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~ 77 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGV 77 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeE
Confidence 88999999999876 68999999999899999999 99999999999999766 47789999999987789999999
Q ss_pred EEeccccccCC-----eeeeEEecccCC----CceEEEEEEE
Q 003259 568 RVNLEGLVEGS-----VRDIWVPLEKVN----TGELRLQIEA 600 (835)
Q Consensus 568 ~i~L~~l~~~~-----~~~~w~~L~~~~----~G~I~l~l~~ 600 (835)
.++++++..+. ....||+|.+.. +|+|.+++.|
T Consensus 78 ~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 78 CFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred EEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 99999987532 356899998754 5999998876
No 107
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.61 E-value=3.3e-15 Score=136.13 Aligned_cols=96 Identities=15% Similarity=0.248 Sum_probs=79.5
Q ss_pred cEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCcCeEEEEEec-ceeeeeccCCCCCCcccceeEEEEEc
Q 003259 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDARPGSDPRWDSMFNMVLHE 373 (835)
Q Consensus 295 GvL~V~V~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~~~~dpyv~v~~g-~~~~t~~i~~~~nP~W~etf~~~v~~ 373 (835)
|+|.|+|++|++|+..+..+.. +..+||||+|+++ ...||++++++.||+|||+|.|.+.+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~------------------~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~ 62 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRT------------------GFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYP 62 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCC------------------CCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeC
Confidence 8999999999999987632110 1124999999997 55678889999999999999999866
Q ss_pred C--CceEEEEEEEeCCCCCCcceeEEEEEecccccCCC
Q 003259 374 E--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDS 409 (835)
Q Consensus 374 ~--~~~L~~~v~d~~~~~~kdd~LG~~~i~L~~L~~~~ 409 (835)
. ...|.|+|||+|. ..+|++||++.++|++|..+.
T Consensus 63 ~~~~~~L~~~V~D~d~-~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 63 HEKNFDIQFKVLDKDK-FSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred ccCCCEEEEEEEECCC-CCCCcceEEEEEEHHHHHhhC
Confidence 4 3589999999997 678999999999999998754
No 108
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.61 E-value=3.9e-15 Score=136.73 Aligned_cols=96 Identities=25% Similarity=0.429 Sum_probs=85.3
Q ss_pred CcCCCCCCEEEEEECCe-EeeeeeecCCCCCeeeeEEEeecC---CCcEEEEEEECCCCCCCCeEEEEEEEccccCC-CC
Q 003259 635 DLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGDCVVEYQRLPP-NQ 709 (835)
Q Consensus 635 d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~---~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~-~~ 709 (835)
..+|.+||||+|.++++ ..+|++++++.||+|||.|.|.+. ...|.|+|+|++.+ ++++||++.++|+++.. ..
T Consensus 8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~ 86 (111)
T cd04052 8 SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATS 86 (111)
T ss_pred ccCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhh
Confidence 36789999999999874 679999999999999999999986 35699999999998 89999999999998843 34
Q ss_pred ceeeEEecCCCCCcEEEEEEEE
Q 003259 710 MADKWIPLQGVRKGEIHVLITR 731 (835)
Q Consensus 710 ~~~~w~~L~~~~~G~i~l~l~~ 731 (835)
....|++|++...|+|+++++|
T Consensus 87 ~~~~w~~L~~~~~G~i~~~~~~ 108 (111)
T cd04052 87 VGQQWFPLSGNGQGRIRISALW 108 (111)
T ss_pred ccceeEECCCCCCCEEEEEEEE
Confidence 5689999998889999999998
No 109
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.61 E-value=3.8e-15 Score=141.91 Aligned_cols=99 Identities=27% Similarity=0.391 Sum_probs=89.7
Q ss_pred EEEEEEEeecCCcCCcCCCCCCEEEEEEC----CeEeeeeeecCCCCCeeeeEEEeecCC------------------Cc
Q 003259 621 IELVIVEARDLVAADLRGTSDPYVKVQYG----DLKKRTKVIFKTLNPQWHQTLEFPDDG------------------SP 678 (835)
Q Consensus 621 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~----~~~~kT~v~~~t~nP~wne~f~f~v~~------------------~~ 678 (835)
|+|.|++|++|+.. ..|.+||||+++++ +.+++|++++++.||+|||+|.|++.. ..
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57899999999988 78899999999998 678999999999999999999999642 47
Q ss_pred EEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEecCCC
Q 003259 679 LTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV 720 (835)
Q Consensus 679 L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 720 (835)
|.|+|||++..+++++||++.+++.++........||+|+..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 999999999998999999999999999877778999999754
No 110
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.61 E-value=1.3e-14 Score=138.53 Aligned_cols=101 Identities=24% Similarity=0.340 Sum_probs=88.3
Q ss_pred EEEEEEEEeecCCCCC-CCCCCCcEEEEEE--CC---eEeecccc-CCCCCccceEEEEEeeCCceeEEEEEE-EeccC-
Q 003259 489 KINVTVVEGKDLMPKD-KSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCY-NEEIF- 559 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~-~~g~~dpyv~v~l--g~---~~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~-d~d~~- 559 (835)
.|.|+|++|+||...+ ..|.+||||++++ ++ .++||+++ ++.||+|||+|.|.+......|.|+|| |++..
T Consensus 30 ~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~ 109 (146)
T cd04028 30 QLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMD 109 (146)
T ss_pred EEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCC
Confidence 7999999999998764 5688999999999 33 37899999 999999999999998866889999999 46655
Q ss_pred CCceEEEEEEeccccccCCeeeeEEecccC
Q 003259 560 GDENMGSARVNLEGLVEGSVRDIWVPLEKV 589 (835)
Q Consensus 560 ~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~ 589 (835)
++++||++.++|+++..+.....||+|.+.
T Consensus 110 ~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 110 KKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 889999999999999777777899999864
No 111
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.61 E-value=6.5e-15 Score=134.23 Aligned_cols=96 Identities=15% Similarity=0.246 Sum_probs=82.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEeecccc-CCCCCccceEEEEEeeC---CceeEEEEEEEeccC
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG----KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF 559 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg----~~~~kT~~~-~t~nP~Wne~f~f~v~~---~~~~L~i~V~d~d~~ 559 (835)
+.|.|+|++|++|+ ..|.+||||++++. ..+++|+++ +|.||.|||+|.|.+.. +...|.|.|||+|.+
T Consensus 14 ~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drf 90 (118)
T cd08677 14 AELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRF 90 (118)
T ss_pred CEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCC
Confidence 48999999999998 24669999999993 257899999 99999999999999765 366899999999999
Q ss_pred -CCceEEEEEEeccccccCCeeeeEEec
Q 003259 560 -GDENMGSARVNLEGLVEGSVRDIWVPL 586 (835)
Q Consensus 560 -~d~~IG~~~i~L~~l~~~~~~~~w~~L 586 (835)
++++||++.+++.++..+.....|..|
T Consensus 91 s~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 91 SRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCCceEEEEEEccccccCCccccchhcC
Confidence 899999999999988666666678643
No 112
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.60 E-value=5e-15 Score=138.29 Aligned_cols=93 Identities=29% Similarity=0.483 Sum_probs=83.3
Q ss_pred CCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeec----CCCcEEEEEEECCCC
Q 003259 614 IGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPD----DGSPLTLHVRDHNAL 689 (835)
Q Consensus 614 ~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v----~~~~L~i~V~d~d~~ 689 (835)
.....|.|+|+|++|++|+. +..|.+||||+|+++++++||+++++++||+|||+|.|.. ....|.|+|||++.+
T Consensus 23 ~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~ 101 (127)
T cd04032 23 TRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNG 101 (127)
T ss_pred CcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCC
Confidence 34667999999999999984 6778899999999999999999999999999999999973 257899999999999
Q ss_pred CCCCeEEEEEEEccccCC
Q 003259 690 LASSSIGDCVVEYQRLPP 707 (835)
Q Consensus 690 ~~d~~iG~~~i~l~~l~~ 707 (835)
++|++||++.++|.....
T Consensus 102 s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 102 WDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCCeeEEEEEEecCCce
Confidence 999999999999986643
No 113
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.60 E-value=9.3e-15 Score=137.05 Aligned_cols=100 Identities=21% Similarity=0.337 Sum_probs=87.4
Q ss_pred cEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC-----CeEeecccc-CCCCCccceEEEEEeeC---CceeEEEEEEEec
Q 003259 488 RKINVTVVEGKDLMPKDK-SGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEE 557 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~-~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~Wne~f~f~v~~---~~~~L~i~V~d~d 557 (835)
+.|.|+|++|+||+..+. .|.+||||++++. ...+||+++ ++.||.|||+|.|.+.. ....|.|.|||++
T Consensus 15 ~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~ 94 (125)
T cd04029 15 QSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYD 94 (125)
T ss_pred CeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence 379999999999987764 4889999999992 246899999 99999999999999755 3568999999999
Q ss_pred cC-CCceEEEEEEeccccccCCeeeeEEecc
Q 003259 558 IF-GDENMGSARVNLEGLVEGSVRDIWVPLE 587 (835)
Q Consensus 558 ~~-~d~~IG~~~i~L~~l~~~~~~~~w~~L~ 587 (835)
.. ++++||++.++|.++........||+|.
T Consensus 95 ~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 95 RFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 87 8899999999999998888888999983
No 114
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.60 E-value=1.4e-14 Score=134.75 Aligned_cols=111 Identities=24% Similarity=0.404 Sum_probs=98.0
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCccceEEEEEeeCCceeEEEEEEEeccC-CCceEE
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG 565 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~-~d~~IG 565 (835)
|.|.|+|++|++|+..+..+.+||||++++++..++|+++ ++.||.|||+|.|.+.+....+.|+|||++.. ++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 4799999999999988888999999999999888999999 99999999999999766577899999999886 889999
Q ss_pred EEEEeccccccCCeeeeEEecccC-----CCceEEEEEEE
Q 003259 566 SARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEA 600 (835)
Q Consensus 566 ~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~I~l~l~~ 600 (835)
++.+++.++..+. ..|++|... ..|+|.+++++
T Consensus 81 ~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 81 KVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred EEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999987553 579999653 36999998865
No 115
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.60 E-value=1.4e-14 Score=137.32 Aligned_cols=109 Identities=24% Similarity=0.307 Sum_probs=91.2
Q ss_pred EEEEEEEEeecCCcCCcCCCCCCEEEEEECC-------------eEeeeeeecCCCCCee-eeEEEeecC-CCcEEEEEE
Q 003259 620 WIELVIVEARDLVAADLRGTSDPYVKVQYGD-------------LKKRTKVIFKTLNPQW-HQTLEFPDD-GSPLTLHVR 684 (835)
Q Consensus 620 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-------------~~~kT~v~~~t~nP~w-ne~f~f~v~-~~~L~i~V~ 684 (835)
.+.|.+++|++|+ .+..|.+||||++++.. ++++|+++++|+||+| ||+|.|.+. ++.|.++||
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~~~L~v~V~ 80 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPTDVLEIEVK 80 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCCCEEEEEEE
Confidence 3678999999998 77789999999999942 3689999999999999 999999985 678999999
Q ss_pred ECCCCCC---CCeEEEEEEEccccCCC---CceeeEEecCC-----CCCcEEEEEE
Q 003259 685 DHNALLA---SSSIGDCVVEYQRLPPN---QMADKWIPLQG-----VRKGEIHVLI 729 (835)
Q Consensus 685 d~d~~~~---d~~iG~~~i~l~~l~~~---~~~~~w~~L~~-----~~~G~i~l~l 729 (835)
|++..++ +++||++.+++.++..+ .....||+|+. ..+|+|.+.+
T Consensus 81 D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 81 DKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred ecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9876444 78999999999998644 34778999963 3458888765
No 116
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.60 E-value=8.5e-15 Score=136.68 Aligned_cols=110 Identities=25% Similarity=0.480 Sum_probs=95.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-Eeecccc-CCCCCccceEEEEEeeCCceeEEEEEEEeccC-CCceEEE
Q 003259 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMGS 566 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~-~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~-~d~~IG~ 566 (835)
|.|+|++|++|+..+..|.+||||++++++. .++|+++ ++.||.|||.|.|.+......|.|.|||++.. ++++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 7899999999999998999999999999764 5799999 99999999999999776667899999999987 8999999
Q ss_pred EEEeccccccCC-eeeeEEecccCC-----CceEEEEEE
Q 003259 567 ARVNLEGLVEGS-VRDIWVPLEKVN-----TGELRLQIE 599 (835)
Q Consensus 567 ~~i~L~~l~~~~-~~~~w~~L~~~~-----~G~I~l~l~ 599 (835)
+.++++++.... ....|++|.+.. .|+|++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 999998887543 367899997633 689988764
No 117
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.60 E-value=1.3e-14 Score=137.66 Aligned_cols=111 Identities=27% Similarity=0.552 Sum_probs=97.3
Q ss_pred cEEEEEEEEeecCCCCCC----------CCCCCcEEEEEECCe-Eeecccc-CCCCCccceEEEEEeeCCceeEEEEEEE
Q 003259 488 RKINVTVVEGKDLMPKDK----------SGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYN 555 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~----------~g~~dpyv~v~lg~~-~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d 555 (835)
|.|+|+|++|++|...+. .+.+||||+++++++ ..+|+++ ++.||.|||+|+|.+. +...+.|.|||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d 82 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFH 82 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEe
Confidence 489999999999987775 268999999999764 4799999 9999999999999975 56789999999
Q ss_pred eccC-CCceEEEEEEecccccc--CCeeeeEEecccCCCceEEEEEEEe
Q 003259 556 EEIF-GDENMGSARVNLEGLVE--GSVRDIWVPLEKVNTGELRLQIEAT 601 (835)
Q Consensus 556 ~d~~-~d~~IG~~~i~L~~l~~--~~~~~~w~~L~~~~~G~I~l~l~~~ 601 (835)
++.. ++++||++.++|.++.. +.....|++|++ .|+|+++++|.
T Consensus 83 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~--~G~l~l~~~~~ 129 (132)
T cd04014 83 DAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP--QGKLHVKIELK 129 (132)
T ss_pred CCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC--CcEEEEEEEEe
Confidence 8876 78999999999999987 456789999984 69999999987
No 118
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.60 E-value=8.4e-15 Score=135.36 Aligned_cols=98 Identities=19% Similarity=0.310 Sum_probs=86.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE-C----C--eEeecccc-CCCCCccceEEEEEeeCC----ceeEEEEEEEec
Q 003259 490 INVTVVEGKDLMPKDKSGKCDPYVKLQY-G----K--IVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYNEE 557 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~~g~~dpyv~v~l-g----~--~~~kT~~~-~t~nP~Wne~f~f~v~~~----~~~L~i~V~d~d 557 (835)
|+|+|++|++|+..+ .|.+||||+|++ | . ++++|+++ ++.||.|||+|+|.+... ...|.|.|||++
T Consensus 2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 899999999998877 599999999998 3 2 46789999 999999999999998742 457999999998
Q ss_pred cC-CCceEEEEEEeccccccCCeeeeEEeccc
Q 003259 558 IF-GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (835)
Q Consensus 558 ~~-~d~~IG~~~i~L~~l~~~~~~~~w~~L~~ 588 (835)
.. ++++||++.+++.++..+.....|++|..
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 66 78999999999999998888889999976
No 119
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.60 E-value=1.1e-14 Score=134.82 Aligned_cols=99 Identities=30% Similarity=0.514 Sum_probs=90.6
Q ss_pred EEEEEEEeecCCcCCcCCCCCCEEEEEECC-eEeeeeeecCCCCCeeeeEEEeecC---CCcEEEEEEECCCCCCCCeEE
Q 003259 621 IELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG 696 (835)
Q Consensus 621 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~v~---~~~L~i~V~d~d~~~~d~~iG 696 (835)
|+|+|++|++|+..+..|.+||||++.+++ ..++|+++.++.||+|||+|.|.+. ...+.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 578999999999999889999999999975 4579999999999999999999975 467999999999999999999
Q ss_pred EEEEEccccCCCCceeeEEecCC
Q 003259 697 DCVVEYQRLPPNQMADKWIPLQG 719 (835)
Q Consensus 697 ~~~i~l~~l~~~~~~~~w~~L~~ 719 (835)
++.+++.++..+.....|++|.+
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~ 103 (115)
T cd04040 81 SAYIDLSDLEPEETTELTLPLDG 103 (115)
T ss_pred EEEEEHHHcCCCCcEEEEEECcC
Confidence 99999999988888999999974
No 120
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.59 E-value=8.4e-15 Score=139.22 Aligned_cols=113 Identities=27% Similarity=0.357 Sum_probs=97.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------Eeecccc-CCCCCccceEEEEEeeCCceeEEEEEEEeccC-
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-------VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF- 559 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~-------~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~- 559 (835)
.|+|+|++|++|+..+..+.+||||++++++. .++|+++ ++.||.|||+|.|.+......|.|+|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 38999999999999888899999999999543 5799999 99999999999999776677899999999987
Q ss_pred CCceEEEEEEeccccccCC------eeeeEEecccC-----CCceEEEEEEEe
Q 003259 560 GDENMGSARVNLEGLVEGS------VRDIWVPLEKV-----NTGELRLQIEAT 601 (835)
Q Consensus 560 ~d~~IG~~~i~L~~l~~~~------~~~~w~~L~~~-----~~G~I~l~l~~~ 601 (835)
++++||++.+++.++..+. ....||+|++. ..|+|++++.|.
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 7899999999999988653 24689999853 369999999873
No 121
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.59 E-value=1.7e-14 Score=135.67 Aligned_cols=99 Identities=22% Similarity=0.340 Sum_probs=86.0
Q ss_pred EEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEeecccc-CCCCCccceEEEEEeeCC---ceeEEEEEEEecc
Q 003259 489 KINVTVVEGKDLMPKDKS-GKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI 558 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~-g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~Wne~f~f~v~~~---~~~L~i~V~d~d~ 558 (835)
.|.|+|++|+||+.++.. |.+||||++++. ...+||+++ ++.||+|||+|.|.+... ...|.+.|||.+.
T Consensus 16 ~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~ 95 (128)
T cd08392 16 CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT 95 (128)
T ss_pred EEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC
Confidence 899999999999988865 999999999992 247799999 999999999999997553 5699999999998
Q ss_pred C-CCceEEEEEEeccccccC---CeeeeEEecc
Q 003259 559 F-GDENMGSARVNLEGLVEG---SVRDIWVPLE 587 (835)
Q Consensus 559 ~-~d~~IG~~~i~L~~l~~~---~~~~~w~~L~ 587 (835)
. ++++||++.++|.++... .....||+|.
T Consensus 96 ~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 96 LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 7 889999999999998643 3667999984
No 122
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.59 E-value=7.9e-16 Score=161.92 Aligned_cols=117 Identities=31% Similarity=0.492 Sum_probs=103.7
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEEC-----CeEeeeeeecCCCCCe
Q 003259 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQ 665 (835)
Q Consensus 591 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~ 665 (835)
+|+|++.+... ...|.|+|.+|+||.++|.+|.+||||++.+- ..+++|++++.|+||+
T Consensus 168 RGrl~l~~~~~----------------~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~ 231 (683)
T KOG0696|consen 168 RGRLYLEAHIK----------------RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPV 231 (683)
T ss_pred cceEEEEEEec----------------CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCcc
Confidence 69999988764 36899999999999999999999999999992 2578999999999999
Q ss_pred eeeEEEeecC----CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEecCCCCCcE
Q 003259 666 WHQTLEFPDD----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGE 724 (835)
Q Consensus 666 wne~f~f~v~----~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~ 724 (835)
|||+|.|... +..|.|+|||+|+.++++|+|...+.+++|... +.+.||.|-....||
T Consensus 232 wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K~-p~~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 232 WNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQKA-PVDGWYKLLSQEEGE 293 (683)
T ss_pred ccceeEEecccccccceeEEEEecccccccccccceecccHHHHhhc-chhhHHHHhhhhcCc
Confidence 9999999963 678999999999999999999999999999654 588999997666664
No 123
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.59 E-value=1.5e-14 Score=135.55 Aligned_cols=99 Identities=25% Similarity=0.514 Sum_probs=90.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCccceEEEEEeeCC-ceeEEEEEEEeccC-CCceEEE
Q 003259 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMGS 566 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne~f~f~v~~~-~~~L~i~V~d~d~~-~d~~IG~ 566 (835)
|+|+|++|++|...+..+.+||||++++++..++|+++ ++.||.|||+|.|.+... ...|.|+|||++.. ++++||.
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~ 81 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGK 81 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEE
Confidence 89999999999988888899999999999899999999 999999999999997765 57899999999877 7899999
Q ss_pred EEEeccccccCCeeeeEEeccc
Q 003259 567 ARVNLEGLVEGSVRDIWVPLEK 588 (835)
Q Consensus 567 ~~i~L~~l~~~~~~~~w~~L~~ 588 (835)
+.+++.++..+.....||.|.+
T Consensus 82 ~~~~l~~l~~~~~~~~w~~L~~ 103 (123)
T cd04025 82 VVFSIQTLQQAKQEEGWFRLLP 103 (123)
T ss_pred EEEEHHHcccCCCCCCEEECCC
Confidence 9999999987766788999875
No 124
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.59 E-value=2.3e-14 Score=134.42 Aligned_cols=99 Identities=28% Similarity=0.445 Sum_probs=88.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeecccc-CCCCCccceEEEEEeeCC---ceeEEEEEEEeccC-C
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-G 560 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg---~~~~kT~~~-~t~nP~Wne~f~f~v~~~---~~~L~i~V~d~d~~-~ 560 (835)
.|.|+|++|++|+..+..+.+||||++++. +..++|+++ ++.||.|||+|.|.+... ...|.|+|||++.. +
T Consensus 17 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~ 96 (124)
T cd08385 17 QLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSK 96 (124)
T ss_pred EEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCC
Confidence 899999999999988888999999999983 357899999 999999999999997542 56899999999887 8
Q ss_pred CceEEEEEEeccccccCCeeeeEEecc
Q 003259 561 DENMGSARVNLEGLVEGSVRDIWVPLE 587 (835)
Q Consensus 561 d~~IG~~~i~L~~l~~~~~~~~w~~L~ 587 (835)
+++||++.+++.++..+.....|++|+
T Consensus 97 ~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 97 HDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CceeEEEEEecCcccCCCCcceEEEcc
Confidence 899999999999998877888999986
No 125
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.58 E-value=2.1e-14 Score=134.79 Aligned_cols=110 Identities=25% Similarity=0.431 Sum_probs=92.3
Q ss_pred eEEEEEEEEeecCCcCCcCCCCCCEEEEEECCe-EeeeeeecCCCCCeeeeEEEeecC-CCcEEEEEEECCCCCCCCeEE
Q 003259 619 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLASSSIG 696 (835)
Q Consensus 619 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~-~~~L~i~V~d~d~~~~d~~iG 696 (835)
..|+|+|.+|+ |...+..+.+||||+++++++ ..+|+++++++||+|||.|.|.+. ...|.|+|||++..+.|++||
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTPQSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCCCCEEEEEEEeCCCCCCCcEEE
Confidence 36899999998 655555889999999999887 899999999999999999999985 678999999999999999999
Q ss_pred EEEEEccccCCCC---c--eeeEEecCC------CCCcEEEEEE
Q 003259 697 DCVVEYQRLPPNQ---M--ADKWIPLQG------VRKGEIHVLI 729 (835)
Q Consensus 697 ~~~i~l~~l~~~~---~--~~~w~~L~~------~~~G~i~l~l 729 (835)
++.++|+++.... . ...|+++.. ...|+|++.+
T Consensus 81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 81 EASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999885432 1 335899842 3468888765
No 126
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.58 E-value=2.5e-14 Score=134.42 Aligned_cols=98 Identities=28% Similarity=0.476 Sum_probs=84.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeecccc-CCCCCccceEEEEEeeC----CceeEEEEEEEecc
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEI 558 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~-----~~~kT~~~-~t~nP~Wne~f~f~v~~----~~~~L~i~V~d~d~ 558 (835)
.|.|+|++|++|...+..+.+||||++++.. .+++|+++ ++.||.|||+|.|.+.. ....|.|+|||++.
T Consensus 17 ~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~ 96 (125)
T cd04031 17 QLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDR 96 (125)
T ss_pred EEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCC
Confidence 8999999999999888889999999999942 67899999 99999999999998544 35689999999998
Q ss_pred C-CCceEEEEEEeccccccCCeeeeEEecc
Q 003259 559 F-GDENMGSARVNLEGLVEGSVRDIWVPLE 587 (835)
Q Consensus 559 ~-~d~~IG~~~i~L~~l~~~~~~~~w~~L~ 587 (835)
. ++++||++.++|.+.. ......||+|+
T Consensus 97 ~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 97 DGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred CCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 7 7899999999999833 33346899985
No 127
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=1.7e-14 Score=135.23 Aligned_cols=115 Identities=23% Similarity=0.335 Sum_probs=97.7
Q ss_pred cEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--eEeecccc-CCCCCccceEEEEEeeCCceeEEEEEEEeccC-CCc
Q 003259 488 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQYGK--IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDE 562 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~-~~g~~dpyv~v~lg~--~~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~-~d~ 562 (835)
|.|.|+|++|++|+..+ ..+.+||||++.+++ ..++|+++ ++.||.|||.|.|.+......|.|+|||++.. +++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~ 81 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDK 81 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCc
Confidence 48999999999998654 456799999999976 88999999 99999999999999876688999999999887 889
Q ss_pred eEEEEEEeccccccCCeee-eEEec--ccCCCceEEEEEEEee
Q 003259 563 NMGSARVNLEGLVEGSVRD-IWVPL--EKVNTGELRLQIEATR 602 (835)
Q Consensus 563 ~IG~~~i~L~~l~~~~~~~-~w~~L--~~~~~G~I~l~l~~~~ 602 (835)
+||.+.+++.++....... .|+.+ .++..|+|+++++|.|
T Consensus 82 ~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 82 LIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred eeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 9999999999998776543 34444 3345799999999974
No 128
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.58 E-value=3e-14 Score=135.68 Aligned_cols=115 Identities=24% Similarity=0.428 Sum_probs=96.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCccceEEEEEeeC----------CceeEEEEEEEec
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG----------GGECLMVKCYNEE 557 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne~f~f~v~~----------~~~~L~i~V~d~d 557 (835)
.|+|+|++|++|+.++..|.+||||+++++++.++|+++ ++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 699999999999999999999999999999999999999 99999999999997432 1257999999999
Q ss_pred cC-CCceEEEEEE-ecccccc---CCeeeeEEecccC--CCceEEEEEEEeec
Q 003259 558 IF-GDENMGSARV-NLEGLVE---GSVRDIWVPLEKV--NTGELRLQIEATRV 603 (835)
Q Consensus 558 ~~-~d~~IG~~~i-~L~~l~~---~~~~~~w~~L~~~--~~G~I~l~l~~~~~ 603 (835)
.. +|++||++.+ ++..+.. +.....|++|... ..|+|.++++++++
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 87 7899999987 4433332 3466799999753 36999999998854
No 129
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.57 E-value=5.1e-14 Score=132.42 Aligned_cols=112 Identities=18% Similarity=0.253 Sum_probs=95.4
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCccceEEEEEeeCCceeEEEEEEEeccCCCceEEE
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGS 566 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~~d~~IG~ 566 (835)
.+++|+|++|++|...+..|.+||||+++++++.++|+++ ++.||.|||.|.|.+......|.|+|||++..+|++||.
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~ 82 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQ 82 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCCCCceEE
Confidence 3799999999999988888999999999999999999999 999999999999987777889999999998778999999
Q ss_pred EEEeccccccCCeeeeEEeccc-------CCCceEEEEEEEe
Q 003259 567 ARVNLEGLVEGSVRDIWVPLEK-------VNTGELRLQIEAT 601 (835)
Q Consensus 567 ~~i~L~~l~~~~~~~~w~~L~~-------~~~G~I~l~l~~~ 601 (835)
+.+++.++. .....+++|.. ...|+|.+++...
T Consensus 83 ~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 83 ATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred EEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 999998754 33446777742 1257777776554
No 130
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.56 E-value=2.1e-14 Score=137.91 Aligned_cols=98 Identities=28% Similarity=0.434 Sum_probs=85.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeecccc-CCCCCccceEEEEEee---------------C-Cce
Q 003259 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEI---------------G-GGE 547 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~-----~~~kT~~~-~t~nP~Wne~f~f~v~---------------~-~~~ 547 (835)
|.|+|++|++|.. ..|.+||||+|++.. ..++|+++ ++.||.|||+|.|.+. + ...
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 8999999999987 578999999999943 67899999 9999999999999984 1 135
Q ss_pred eEEEEEEEeccC-CCceEEEEEEeccccccC-CeeeeEEecccC
Q 003259 548 CLMVKCYNEEIF-GDENMGSARVNLEGLVEG-SVRDIWVPLEKV 589 (835)
Q Consensus 548 ~L~i~V~d~d~~-~d~~IG~~~i~L~~l~~~-~~~~~w~~L~~~ 589 (835)
.|.|.|||++.. ++++||++.+++.++..+ .....||+|.+.
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 799999999987 899999999999999876 567899999764
No 131
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.56 E-value=6.1e-14 Score=133.48 Aligned_cols=109 Identities=21% Similarity=0.304 Sum_probs=93.4
Q ss_pred ceEEEEEEEEeecCCcCCcCCCCCCEEEEEECCeE-eeeeeecCCCCCeeeeEEEeecC--CCcEEEEEEECCC-CC---
Q 003259 618 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNA-LL--- 690 (835)
Q Consensus 618 ~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~--~~~L~i~V~d~d~-~~--- 690 (835)
...|.|.|++|++|+.++ ||||.+.+++.. .||+++.++.||.|+|.|.|++. ...|.|.|++.+. .+
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence 467899999999998864 899999999976 59999999999999999999975 3679999976543 22
Q ss_pred CCCeEEEEEEEccccCCCCceeeEEecCC---C----------CCcEEEEEEEE
Q 003259 691 ASSSIGDCVVEYQRLPPNQMADKWIPLQG---V----------RKGEIHVLITR 731 (835)
Q Consensus 691 ~d~~iG~~~i~l~~l~~~~~~~~w~~L~~---~----------~~G~i~l~l~~ 731 (835)
++.+||.+.||+.++..+...++||+|.+ . ..+.|+++++|
T Consensus 85 ~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf 138 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARY 138 (146)
T ss_pred CCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEE
Confidence 57899999999999998889999999953 1 22799999998
No 132
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.56 E-value=2e-14 Score=134.69 Aligned_cols=111 Identities=27% Similarity=0.352 Sum_probs=89.0
Q ss_pred EEEEEEEEeecCCcCCcCCCCCCEEEEEECCeE--eeeeeecCCCCCeeeeEEEeecC---CCcEEEEEEECCCCCCCCe
Q 003259 620 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLK--KRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSS 694 (835)
Q Consensus 620 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~--~kT~v~~~t~nP~wne~f~f~v~---~~~L~i~V~d~d~~~~d~~ 694 (835)
.|+|.|++|++|+..+..|.+||||++++++.+ .+|+++++|+||+|||+|.|++. ...|.|+|||++.+++|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 378999999999999999999999999998864 58888999999999999999864 4689999999999999999
Q ss_pred EEEEEEEccccCCCCceeeEEecCC--CCCcEEEEEEEE
Q 003259 695 IGDCVVEYQRLPPNQMADKWIPLQG--VRKGEIHVLITR 731 (835)
Q Consensus 695 iG~~~i~l~~l~~~~~~~~w~~L~~--~~~G~i~l~l~~ 731 (835)
||++.+++++.... ..-.|.-+.. ...|.++..-++
T Consensus 81 iG~~~i~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd04037 81 IGETVIDLEDRFFS-KHRATCGLPPTYEESGPNQWRDSL 118 (124)
T ss_pred eEEEEEeecccccc-hHHHhccCCCcccccCceecCccc
Confidence 99999999876531 1222222221 245766666555
No 133
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.55 E-value=8.3e-14 Score=131.20 Aligned_cols=99 Identities=24% Similarity=0.317 Sum_probs=84.6
Q ss_pred EEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEeecccc-CCCCCccceEEEEEeeC----CceeEEEEEEEeccC
Q 003259 489 KINVTVVEGKDLMPKDKS-GKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEIF 559 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~-g~~dpyv~v~lg---~~~~kT~~~-~t~nP~Wne~f~f~v~~----~~~~L~i~V~d~d~~ 559 (835)
.|.|+|++|++|+..+.. +.+||||++++. ++++||+++ ++.||.|||+|.|.... ....|.++|||++..
T Consensus 17 ~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~ 96 (128)
T cd08388 17 ALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRY 96 (128)
T ss_pred EEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCC
Confidence 899999999999988875 899999999983 457899999 99999999999994222 245799999999877
Q ss_pred -CCceEEEEEEeccccccC--CeeeeEEecc
Q 003259 560 -GDENMGSARVNLEGLVEG--SVRDIWVPLE 587 (835)
Q Consensus 560 -~d~~IG~~~i~L~~l~~~--~~~~~w~~L~ 587 (835)
++++||++.++|.++... .+...|.+|.
T Consensus 97 ~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 97 SRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 899999999999998655 4667898875
No 134
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.55 E-value=3.3e-14 Score=130.86 Aligned_cols=97 Identities=19% Similarity=0.283 Sum_probs=84.9
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCccceEEEEEeeCCceeEEEEEEEeccCCCceEEE
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGS 566 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~~d~~IG~ 566 (835)
+.|.|+|++|++|+.+ +..||||+|++|+++.+|++. + .||.|||.|.|.+......|.|+|||++...|++||+
T Consensus 2 ~~L~V~Vv~Ar~L~~~---~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~ 77 (127)
T cd08394 2 SLLCVLVKKAKLDGAP---DKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGT 77 (127)
T ss_pred ceEEEEEEEeeCCCCC---CCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEE
Confidence 3799999999999654 346999999999999999999 6 5999999999998776666999999999779999999
Q ss_pred EEEeccccccCCe--eeeEEeccc
Q 003259 567 ARVNLEGLVEGSV--RDIWVPLEK 588 (835)
Q Consensus 567 ~~i~L~~l~~~~~--~~~w~~L~~ 588 (835)
+.++|.++..+.. ...||+|..
T Consensus 78 v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 78 VWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred EEEEhHHcccCCCCCCCccEecCh
Confidence 9999999986653 379999985
No 135
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.55 E-value=5e-14 Score=131.94 Aligned_cols=99 Identities=27% Similarity=0.408 Sum_probs=87.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeecccc-CCCCCccceEEEEE-eeC---CceeEEEEEEEeccC-
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELD-EIG---GGECLMVKCYNEEIF- 559 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~l---g~~~~kT~~~-~t~nP~Wne~f~f~-v~~---~~~~L~i~V~d~d~~- 559 (835)
.|.|+|++|+||+..+..|.+||||++.+ .++.++|++. + .||+|||+|.|. +.. ....|.+.|||++..
T Consensus 17 ~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~ 95 (124)
T cd08389 17 KLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMR 95 (124)
T ss_pred EEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcc
Confidence 79999999999999888899999999887 3468899988 7 999999999998 443 366899999999887
Q ss_pred CCceEEEEEEeccccccCCeeeeEEeccc
Q 003259 560 GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (835)
Q Consensus 560 ~d~~IG~~~i~L~~l~~~~~~~~w~~L~~ 588 (835)
++++||++.++|+++..+.....|++|++
T Consensus 96 ~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 96 KERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred cCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 79999999999999988778889999873
No 136
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.55 E-value=2.6e-14 Score=132.74 Aligned_cols=98 Identities=27% Similarity=0.461 Sum_probs=85.4
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCccceEEEEEeeCC--ceeEEEEEEEeccC
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF 559 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~Wne~f~f~v~~~--~~~L~i~V~d~d~~ 559 (835)
+.|.|+|++|+||+..+ .|.+||||++++. ...++|+++ ++.||.|||+|.|.+... ...|.|.|||++..
T Consensus 12 ~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~ 90 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK 90 (119)
T ss_pred CEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence 38999999999999888 8899999999993 246799999 999999999999987553 45789999998876
Q ss_pred --CCceEEEEEEeccccccCCeeeeEEec
Q 003259 560 --GDENMGSARVNLEGLVEGSVRDIWVPL 586 (835)
Q Consensus 560 --~d~~IG~~~i~L~~l~~~~~~~~w~~L 586 (835)
++++||.+.+++.++..+.....||.|
T Consensus 91 ~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 91 SRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred cCCCEEEEEEEecHHHhccCccccceEeC
Confidence 478999999999999877777899976
No 137
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.54 E-value=2.3e-14 Score=131.65 Aligned_cols=92 Identities=18% Similarity=0.378 Sum_probs=78.8
Q ss_pred cEEEEEEEecCCCCCCCCC-CCCcccccccCCCCccccccCCCCcCeEEEEEec----ceeeeeccCCCCCCcccceeEE
Q 003259 295 GIVYVRVISASKLSRSSLR-GSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE----ELTRRTDARPGSDPRWDSMFNM 369 (835)
Q Consensus 295 GvL~V~V~~A~~L~~~~~~-g~~~~~~~~~~~dpy~~~~~~~~~~dpyv~v~~g----~~~~t~~i~~~~nP~W~etf~~ 369 (835)
|+|+|+|++|++|+..+.. |++ ||||+|++. ...+|++++++.||+|||+|.|
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~----------------------Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f 58 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSS----------------------DPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFV 58 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCC----------------------CccEEEEEccCCCccEeeeeECCCCCCccceeEEE
Confidence 8999999999999988765 543 999999984 3467888999999999999999
Q ss_pred EEEcC----CceEEEEEEEeCCCCCCcceeEEEEEecccccCCC
Q 003259 370 VLHEE----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDS 409 (835)
Q Consensus 370 ~v~~~----~~~L~~~v~d~~~~~~kdd~LG~~~i~L~~L~~~~ 409 (835)
.+... .+.|.|+|||+|. ..+|++||.+.+++++|..++
T Consensus 59 ~~~~~~~~~~~~l~~~V~d~d~-~~~dd~lG~~~i~l~~l~~~~ 101 (111)
T cd04041 59 LVTPDEVKAGERLSCRLWDSDR-FTADDRLGRVEIDLKELIEDR 101 (111)
T ss_pred EeCchhccCCCEEEEEEEeCCC-CCCCCcceEEEEEHHHHhcCC
Confidence 87642 4689999999997 678999999999999998654
No 138
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.54 E-value=5.6e-14 Score=132.33 Aligned_cols=108 Identities=37% Similarity=0.659 Sum_probs=93.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCccceEEEEEeeCCceeEEEEEEEecc---------
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEI--------- 558 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~--------- 558 (835)
.|.|+|++|++|+..+..|.+||||++++++..++|+++ ++.||.|||+|.|.+..+...|.|+|||++.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 589999999999998888999999999999889999999 9999999999999876666789999999874
Q ss_pred ---CCCceEEEEEEeccccccCCeeeeEEecccCC-----CceEEEEE
Q 003259 559 ---FGDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQI 598 (835)
Q Consensus 559 ---~~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~l 598 (835)
.++++||.+.+++.++.. ....||+|.+.+ +|+|.+++
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence 158999999999998743 346899998632 57777753
No 139
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.54 E-value=9.7e-14 Score=128.74 Aligned_cols=105 Identities=31% Similarity=0.525 Sum_probs=85.6
Q ss_pred EEEEEEEeecCCcCCcCCCCCCEEEEEECCe-EeeeeeecCCCCCeeeeEEEeecCC-----CcEEEEEEECCCCCCCCe
Q 003259 621 IELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDDG-----SPLTLHVRDHNALLASSS 694 (835)
Q Consensus 621 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~-----~~L~i~V~d~d~~~~d~~ 694 (835)
|+|+|++|++|+.. |.+||||++++++. .++|+++++ .||+|||+|.|.+.. ..|.+.+||.+..+++..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999876 78999999999875 579999999 999999999999864 357778888887766666
Q ss_pred EEEEEEEccccCCCCceeeEEecCCC-----CCcEEEEEEEE
Q 003259 695 IGDCVVEYQRLPPNQMADKWIPLQGV-----RKGEIHVLITR 731 (835)
Q Consensus 695 iG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~l~~ 731 (835)
+|.+.+ ..+..+...+.|++|.+. ..|+|++++.|
T Consensus 78 ~g~v~l--~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVAL--SKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEe--cCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 666554 445556678999999753 36999999875
No 140
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.54 E-value=9.7e-14 Score=130.80 Aligned_cols=111 Identities=28% Similarity=0.383 Sum_probs=97.8
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCccceEEEEEeeC---CceeEEEEEEEeccC-CCceEEEEE
Q 003259 494 VVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-GDENMGSAR 568 (835)
Q Consensus 494 V~~a~~L~~~~~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne~f~f~v~~---~~~~L~i~V~d~d~~-~d~~IG~~~ 568 (835)
|++|++|+. ..|.+||||++++++..++|+++ ++.||.|||+|.|.+.. ....|.|+|||++.. ++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 678999987 57899999999999999999999 99999999999999764 367899999999887 889999999
Q ss_pred EeccccccCCeeeeEEecccC----CCceEEEEEEEeecCCC
Q 003259 569 VNLEGLVEGSVRDIWVPLEKV----NTGELRLQIEATRVDDN 606 (835)
Q Consensus 569 i~L~~l~~~~~~~~w~~L~~~----~~G~I~l~l~~~~~~~~ 606 (835)
++++++..+.....|++|.+. ..|+|+++++|.+.+..
T Consensus 80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDGA 121 (127)
T ss_pred EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCCc
Confidence 999999988888899999643 25899999999976543
No 141
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.54 E-value=7.9e-14 Score=126.66 Aligned_cols=94 Identities=16% Similarity=0.371 Sum_probs=75.7
Q ss_pred EEEEEEEeecCCcCCcCCCCCCEEEEEECC-----eEeeeeeecCCCCCeeeeEEEeecC-CCcEEEEEEEC-------C
Q 003259 621 IELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDH-------N 687 (835)
Q Consensus 621 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~-~~~L~i~V~d~-------d 687 (835)
|.|+|++|+||+ +.+||||++.++. .++||+++++|+||+|||+|+|++. ...|.+.|||+ |
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEGSQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCCCCEEEEEEEEccccccccc
Confidence 579999999995 4689999999853 4689999999999999999999986 67899999998 5
Q ss_pred CCCCCCeEEEEEEEcc--ccCCCCceeeEEecCC
Q 003259 688 ALLASSSIGDCVVEYQ--RLPPNQMADKWIPLQG 719 (835)
Q Consensus 688 ~~~~d~~iG~~~i~l~--~l~~~~~~~~w~~L~~ 719 (835)
..+.|+++|.+.+.|+ .+........-+.|.+
T Consensus 76 ~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~~ 109 (118)
T cd08686 76 GEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMNG 109 (118)
T ss_pred ccCcccEEEEEEEEECHHHhccCCeeEEEEEecC
Confidence 6788999988888775 3444344444455553
No 142
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.54 E-value=7.5e-14 Score=136.74 Aligned_cols=103 Identities=24% Similarity=0.390 Sum_probs=89.6
Q ss_pred CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeecccc-CCCCCccceEEEEEeeC----CceeEEEEEEE
Q 003259 486 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYN 555 (835)
Q Consensus 486 ~g~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l-----g~~~~kT~~~-~t~nP~Wne~f~f~v~~----~~~~L~i~V~d 555 (835)
+.+.|.|+|++|++|+..+..+.+||||++++ +...++|+++ ++.||.|||+|.|.+.. ....|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 34589999999999999888899999999988 2468999999 99999999999998543 24579999999
Q ss_pred eccC-CCceEEEEEEeccccccCCeeeeEEeccc
Q 003259 556 EEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (835)
Q Consensus 556 ~d~~-~d~~IG~~~i~L~~l~~~~~~~~w~~L~~ 588 (835)
++.. ++++||++.+++.++........|+.+.+
T Consensus 105 ~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 105 HDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 9988 79999999999999887667788998865
No 143
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.54 E-value=9.2e-14 Score=130.57 Aligned_cols=99 Identities=21% Similarity=0.420 Sum_probs=88.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeecccc-CCCCCccceEEEEEeeC----CceeEEEEEEEeccC-
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEIF- 559 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~l---g~~~~kT~~~-~t~nP~Wne~f~f~v~~----~~~~L~i~V~d~d~~- 559 (835)
.|.|+|++|++|+..+..+.+||||++++ ++..++|+++ ++.||.|||+|.|.+.. ....|.++|||++..
T Consensus 17 ~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~ 96 (125)
T cd08386 17 TLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFS 96 (125)
T ss_pred EEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCc
Confidence 79999999999998888899999999999 3567899999 99999999999997432 245799999999887
Q ss_pred CCceEEEEEEeccccccCCeeeeEEecc
Q 003259 560 GDENMGSARVNLEGLVEGSVRDIWVPLE 587 (835)
Q Consensus 560 ~d~~IG~~~i~L~~l~~~~~~~~w~~L~ 587 (835)
++++||++.+++.++..+.....|++|.
T Consensus 97 ~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 97 RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCcEeeEEEEecccccCCCCcceEEecC
Confidence 7899999999999998877788999985
No 144
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.54 E-value=1.6e-14 Score=166.02 Aligned_cols=358 Identities=15% Similarity=0.166 Sum_probs=219.9
Q ss_pred cEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCcCeEEEEEecceee-eeccCCCCCCcccceeEEE---
Q 003259 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTR-RTDARPGSDPRWDSMFNMV--- 370 (835)
Q Consensus 295 GvL~V~V~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~~~~dpyv~v~~g~~~~-t~~i~~~~nP~W~etf~~~--- 370 (835)
=-+++.|++|+.|...+..+-+ |||+.|.+..+.+ |-++.+|+||.||.+..|-
T Consensus 206 ~~lR~yiyQar~L~a~dk~~~s----------------------dp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~e 263 (1105)
T KOG1326|consen 206 SPLRSYIYQARALGAPDKDDES----------------------DPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVE 263 (1105)
T ss_pred hhhHHHHHHHHhhcCCCcccCC----------------------CchhhhhcccccceeEeecCcCCCCccceeecccee
Confidence 3467888999999887755433 8899998865554 5558899999999988764
Q ss_pred EEc-------CCceEEEEEEEeCCCCCCcceeEEEEEecccccCCCcceeeeCCCCccccccccccCceeeeEeecCCC-
Q 003259 371 LHE-------ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV- 442 (835)
Q Consensus 371 v~~-------~~~~L~~~v~d~~~~~~kdd~LG~~~i~L~~L~~~~~~~w~v~~~~~~~~~~~~~~g~~~~~~~~~~~~- 442 (835)
+.. .-..+.|+|||.+. .++++++|++.....-..+-+...| +|.-+.
T Consensus 264 i~ge~~~~~~~ppi~v~e~yd~dr-~g~~ef~gr~~~~p~V~~~~p~lkw-----------------------~p~~rg~ 319 (1105)
T KOG1326|consen 264 IYGEAHLVLKNPPIRVFEVYDLDR-SGINEFKGRKKQRPYVMVQCPALKW-----------------------VPTMRGA 319 (1105)
T ss_pred ecCccchhhcCCCeEEEEeehhhh-hchHHhhcccccceEEEecCCccce-----------------------EEeeccc
Confidence 222 12478999999998 7899999998765433222111111 111110
Q ss_pred -CcceEEEEEEEeecccCCCCcccCccccCCCccccCCCCccCC--CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC
Q 003259 443 -NSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISR--TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK 519 (835)
Q Consensus 443 -~~G~l~~~l~l~~~~~~d~~~~~~~~~~~~~~~~~~~p~~~~~--~g~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~ 519 (835)
..|++..+. +-+.-+- ...-.+.........-|.--.+ ..+.+.|-....+|+...+......|-+.+.+|+
T Consensus 320 ~l~gd~l~a~----eliq~~~-~i~~p~~~~~~~~~~vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~ 394 (1105)
T KOG1326|consen 320 FLDGDVLIAA----ELIQIGK-PIPQPPPQREIIFSLVPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGG 394 (1105)
T ss_pred ccccchhHHH----HHHhhcC-CCCCCCcccccceeccccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCC
Confidence 112211110 0000000 0000000011111111110000 0113444444455555555566778888899998
Q ss_pred eEeecccc--CCCCCccceEEEEEee-CC-----ceeEEEEEEEeccC-CCceEEEEEEe-ccccccCC-----------
Q 003259 520 IVQRTRTA--HSPNHVWNQKFELDEI-GG-----GECLMVKCYNEEIF-GDENMGSARVN-LEGLVEGS----------- 578 (835)
Q Consensus 520 ~~~kT~~~--~t~nP~Wne~f~f~v~-~~-----~~~L~i~V~d~d~~-~d~~IG~~~i~-L~~l~~~~----------- 578 (835)
+..++..+ ...||.+...+.+... .+ -..+.++|.|.+.+ .....|+|.+. +....-..
T Consensus 395 e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~ 474 (1105)
T KOG1326|consen 395 ERVSSFSIFNRKKNPNFPSRVLGRLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFA 474 (1105)
T ss_pred ceEeeeeehhhhhCCCCceeEEEEEEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCC
Confidence 88888877 7889999977765533 22 34788999998888 77888988774 22221110
Q ss_pred -----------------eeeeEEecccCC----------------------------CceEEEEEEEeecCC--------
Q 003259 579 -----------------VRDIWVPLEKVN----------------------------TGELRLQIEATRVDD-------- 605 (835)
Q Consensus 579 -----------------~~~~w~~L~~~~----------------------------~G~I~l~l~~~~~~~-------- 605 (835)
....+++..+.. ++..++.++....+.
T Consensus 475 ~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~ 554 (1105)
T KOG1326|consen 475 SDPVSIMMGSTDNEIRHCNSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQ 554 (1105)
T ss_pred CCchhhhcCCchhhhhhccccCCCCCccccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhh
Confidence 001111111100 112333332221110
Q ss_pred ------------C-----C-----CCCC-----------------------CCCCCcceEEEEEEEEeecCCcCCcCCCC
Q 003259 606 ------------N-----E-----GSRG-----------------------QNIGSGNGWIELVIVEARDLVAADLRGTS 640 (835)
Q Consensus 606 ------------~-----~-----~~~~-----------------------~~~~~~~g~L~v~v~~a~~L~~~d~~g~~ 640 (835)
. + ..++ +...+....++|++.+|.+|...|.+|.+
T Consensus 555 D~~~~f~l~rG~~~~e~~e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~a 634 (1105)
T KOG1326|consen 555 DWAVTFKLYRGKEGLECLEQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDA 634 (1105)
T ss_pred hccceeEeeeccccCCCcccchhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeeccccCCCCCc
Confidence 0 0 0000 01135567889999999999999999999
Q ss_pred CCEEEEEECCeE--eeeeeecCCCCCeeeeEEEeecC---CCcEEEEEEECCCCCCCCeEEEEEEEcc
Q 003259 641 DPYVKVQYGDLK--KRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGDCVVEYQ 703 (835)
Q Consensus 641 DPyv~v~~~~~~--~kT~v~~~t~nP~wne~f~f~v~---~~~L~i~V~d~d~~~~d~~iG~~~i~l~ 703 (835)
|||+++.+|++. -++..+.+|+||+|++.|++... ...+.++|||+|.++.|+.||+.+++|+
T Consensus 635 dpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLE 702 (1105)
T KOG1326|consen 635 DPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLE 702 (1105)
T ss_pred CceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhh
Confidence 999999999975 57888999999999999988864 6789999999999999999999999987
No 145
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.54 E-value=9.4e-14 Score=130.89 Aligned_cols=100 Identities=27% Similarity=0.337 Sum_probs=88.4
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCccceEEEEEeeCC---ceeEEEEEEEecc
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI 558 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~Wne~f~f~v~~~---~~~L~i~V~d~d~ 558 (835)
+.|.|+|++|+||+..+..+.+||||++++. ...++|+++ ++.||.|||+|.|.+... ...|.+.|||++.
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~ 95 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKS 95 (127)
T ss_pred CEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCc
Confidence 3799999999999998888999999999993 468999999 999999999999997543 4689999999886
Q ss_pred C---CCceEEEEEEeccccccCCeeeeEEecc
Q 003259 559 F---GDENMGSARVNLEGLVEGSVRDIWVPLE 587 (835)
Q Consensus 559 ~---~d~~IG~~~i~L~~l~~~~~~~~w~~L~ 587 (835)
. ++++||++.++|.++..+.....||+|.
T Consensus 96 ~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 96 FLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ccCCCCceEEEEEEecccccccCCccceEECc
Confidence 3 7899999999999998777778999884
No 146
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.53 E-value=4.3e-14 Score=131.81 Aligned_cols=95 Identities=24% Similarity=0.325 Sum_probs=84.5
Q ss_pred EEEEeecCCcCCcCCCCCCEEEEEECCe-------EeeeeeecCCCCCeeeeEEEeecC---CCcEEEEEEECCC----C
Q 003259 624 VIVEARDLVAADLRGTSDPYVKVQYGDL-------KKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNA----L 689 (835)
Q Consensus 624 ~v~~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~v~~~t~nP~wne~f~f~v~---~~~L~i~V~d~d~----~ 689 (835)
..++|++|+..+..|.+||||++++.+. .++|+++++|+||+|||+|.|.+. ...|.|+|||+|. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 3478999999999999999999999654 489999999999999999999753 5679999999997 8
Q ss_pred CCCCeEEEEEEEccccCCCCceeeEEecC
Q 003259 690 LASSSIGDCVVEYQRLPPNQMADKWIPLQ 718 (835)
Q Consensus 690 ~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 718 (835)
+++++||++.++++++..+.....|++|.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 89999999999999998777788899993
No 147
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.53 E-value=1.3e-13 Score=129.72 Aligned_cols=111 Identities=25% Similarity=0.484 Sum_probs=96.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEeecccc-CCCCCccceEEEEEeeCC-ceeEEEEEEEeccC-CCc
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK---IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDE 562 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~---~~~kT~~~-~t~nP~Wne~f~f~v~~~-~~~L~i~V~d~d~~-~d~ 562 (835)
.+.|+|++|++|+..+..+.+||||++++++ ..++|+++ ++.||.|||+|.|.+... ...|.|+|||++.. +++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 6899999999999888889999999999843 57899999 999999999999998764 67899999999987 899
Q ss_pred eEEEEEEecccccc---CCeeeeEEecccCCCceEEEEEEEe
Q 003259 563 NMGSARVNLEGLVE---GSVRDIWVPLEKVNTGELRLQIEAT 601 (835)
Q Consensus 563 ~IG~~~i~L~~l~~---~~~~~~w~~L~~~~~G~I~l~l~~~ 601 (835)
+||++.++|.++.. +.....|++|.+ .|++++.+.+.
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~ 121 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSME 121 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEe
Confidence 99999999988653 335678999975 69999998876
No 148
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.53 E-value=4.3e-14 Score=129.56 Aligned_cols=99 Identities=24% Similarity=0.478 Sum_probs=87.6
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeEeecccc-CCCCCcc-ceEEEEEeeCC---ceeEEEEEEEeccC-CCc
Q 003259 490 INVTVVEGKDLMPKDK-SGKCDPYVKLQYGKIVQRTRTA-HSPNHVW-NQKFELDEIGG---GECLMVKCYNEEIF-GDE 562 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~-~g~~dpyv~v~lg~~~~kT~~~-~t~nP~W-ne~f~f~v~~~---~~~L~i~V~d~d~~-~d~ 562 (835)
|.|+|++|++|+..+. .+.+||||++++++..++|+++ ++.||.| ||+|.|.+... ...|.|+|||++.. +++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 5799999999988774 6889999999999899999999 9999999 99999997653 46899999999987 789
Q ss_pred eEEEEEEecccccc---CCeeeeEEeccc
Q 003259 563 NMGSARVNLEGLVE---GSVRDIWVPLEK 588 (835)
Q Consensus 563 ~IG~~~i~L~~l~~---~~~~~~w~~L~~ 588 (835)
+||++.+++.++.. +.....||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999987 335678999864
No 149
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.53 E-value=5.2e-14 Score=131.16 Aligned_cols=99 Identities=17% Similarity=0.264 Sum_probs=86.6
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--C----CeEeecccc-CCCCCccceEEEEEeeC---CceeEEEEEEEec
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--G----KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEE 557 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l--g----~~~~kT~~~-~t~nP~Wne~f~f~v~~---~~~~L~i~V~d~d 557 (835)
+.|.|+|++|+||...+..+.+||||++++ + +..++|++. ++.||+|||+|+|.+.. ....|.|.|||.+
T Consensus 14 ~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~ 93 (124)
T cd08680 14 SSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVG 93 (124)
T ss_pred CEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCC
Confidence 389999999999998888899999999999 2 247899999 99999999999999765 3679999999998
Q ss_pred cC-CCceEEEEEEeccccccCC-eeeeEEec
Q 003259 558 IF-GDENMGSARVNLEGLVEGS-VRDIWVPL 586 (835)
Q Consensus 558 ~~-~d~~IG~~~i~L~~l~~~~-~~~~w~~L 586 (835)
.. ++++||.+.++|.++.... ....||+|
T Consensus 94 ~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 94 PDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 87 8899999999999996543 56789876
No 150
>PLN03008 Phospholipase D delta
Probab=99.53 E-value=6.6e-14 Score=162.30 Aligned_cols=98 Identities=22% Similarity=0.385 Sum_probs=86.2
Q ss_pred CCCCCEEEEEECCe-EeeeeeecCCCCCeeeeEEEeecC--CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeE
Q 003259 638 GTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKW 714 (835)
Q Consensus 638 g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~--~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w 714 (835)
+++||||+|.++++ ..||+++++++||+|||+|.|++. ...|.|+|+|+|.++ +++||++.||+.++..+...+.|
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~W 153 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGW 153 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEE
Confidence 57899999999875 569999999999999999999985 578999999999997 57999999999999999999999
Q ss_pred EecCC------CCCcEEEEEEEEEecCCc
Q 003259 715 IPLQG------VRKGEIHVLITRKVPELD 737 (835)
Q Consensus 715 ~~L~~------~~~G~i~l~l~~~~p~~~ 737 (835)
++|.+ +.+|+|+++++| .|...
T Consensus 154 l~Ll~~~~kp~k~~~kl~v~lqf-~pv~~ 181 (868)
T PLN03008 154 FPVLGASGKPPKAETAIFIDMKF-TPFDQ 181 (868)
T ss_pred EEccccCCCCCCCCcEEEEEEEE-EEccc
Confidence 99953 235899999999 56544
No 151
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.52 E-value=8.5e-14 Score=130.32 Aligned_cols=108 Identities=17% Similarity=0.330 Sum_probs=91.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeEeecccc-CCCCCccceEEEEEeeCCceeEEEEEEEeccC-C--CceE
Q 003259 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-G--DENM 564 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~~g~~dpyv~v~lg-~~~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~-~--d~~I 564 (835)
|+|+|++|++|+..+..+.+||||+++++ .+.++|+++ ++.||.|||+|.|.+.. ...|.|+|||++.. . +++|
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l 80 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL 80 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence 78999999999988888999999999995 788999999 99999999999999754 67899999999877 2 5799
Q ss_pred EEEEEeccccccCC-eeeeEEecccCC-------CceEEEEE
Q 003259 565 GSARVNLEGLVEGS-VRDIWVPLEKVN-------TGELRLQI 598 (835)
Q Consensus 565 G~~~i~L~~l~~~~-~~~~w~~L~~~~-------~G~I~l~l 598 (835)
|++.+++.++.... ....|++|...+ .|+|.+++
T Consensus 81 G~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 81 GCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 99999999998655 346799995432 46666654
No 152
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.52 E-value=1.7e-13 Score=128.25 Aligned_cols=99 Identities=22% Similarity=0.399 Sum_probs=86.7
Q ss_pred cEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC--C---eEeecccc-CCCCCccceEEEEEeeCC---ceeEEEEEEEec
Q 003259 488 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE 557 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~-~~g~~dpyv~v~lg--~---~~~kT~~~-~t~nP~Wne~f~f~v~~~---~~~L~i~V~d~d 557 (835)
+.|.|+|++|+||+..+ ..+.+||||++++. + ..++|+++ ++.||.|||+|.|.+... ...|.|+|||++
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~ 93 (123)
T cd08521 14 GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHD 93 (123)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCC
Confidence 38999999999999887 67899999999982 1 46899999 999999999999986552 568999999998
Q ss_pred cC-CCceEEEEEEeccccccCCeeeeEEec
Q 003259 558 IF-GDENMGSARVNLEGLVEGSVRDIWVPL 586 (835)
Q Consensus 558 ~~-~d~~IG~~~i~L~~l~~~~~~~~w~~L 586 (835)
.. ++++||++.++|.++..+.....||+|
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 94 RFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCcCCceeeEEEEecccccccCCCccEEEC
Confidence 77 789999999999999777777899986
No 153
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=5.3e-15 Score=151.93 Aligned_cols=201 Identities=26% Similarity=0.349 Sum_probs=163.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeecccc-CCCCCccceEEEEEee--CC--ceeEEEEEEEecc
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEI--GG--GECLMVKCYNEEI 558 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~-----~~~kT~~~-~t~nP~Wne~f~f~v~--~~--~~~L~i~V~d~d~ 558 (835)
.+..++.+|++|.+++.++..|||+++.+.. ...+|++. ++.||.|+|+...... ++ ...+++.|+|.+.
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~ 173 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDK 173 (362)
T ss_pred hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcc
Confidence 6899999999999999999999999999831 35888899 9999999998665532 22 4578889999888
Q ss_pred C-CCceEEEEEEeccccccCCee--eeEEeccc----------CCCceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEE
Q 003259 559 F-GDENMGSARVNLEGLVEGSVR--DIWVPLEK----------VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVI 625 (835)
Q Consensus 559 ~-~d~~IG~~~i~L~~l~~~~~~--~~w~~L~~----------~~~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v 625 (835)
+ ..+++|+..+++..+...... ..|+.-.- ...|+|.+++.|- ....-+.|++
T Consensus 174 ~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~--------------s~~~~l~vt~ 239 (362)
T KOG1013|consen 174 KTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYS--------------STTPGLIVTI 239 (362)
T ss_pred cccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccC--------------cCCCceEEEE
Confidence 8 889999999888887644321 22322111 1368899999876 5667789999
Q ss_pred EEeecCCcCCcCCCCCCEEEEEECC-----eEeeeeeecCCCCCeeeeEEEeecC-----CCcEEEEEEECCCCCCCCeE
Q 003259 626 VEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSI 695 (835)
Q Consensus 626 ~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~-----~~~L~i~V~d~d~~~~d~~i 695 (835)
+++..|...|.+|.+||||..++.. .+++|++.++|+||.||+.|.|.+. ...+.|.|||++..+..+++
T Consensus 240 iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~ 319 (362)
T KOG1013|consen 240 IRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSI 319 (362)
T ss_pred EEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCC
Confidence 9999999999999999999999943 3679999999999999999999874 67899999999988778899
Q ss_pred EEEEEEcc
Q 003259 696 GDCVVEYQ 703 (835)
Q Consensus 696 G~~~i~l~ 703 (835)
|-+...+.
T Consensus 320 GG~~~g~~ 327 (362)
T KOG1013|consen 320 GGSMLGGY 327 (362)
T ss_pred Cccccccc
Confidence 98777544
No 154
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.52 E-value=2.6e-13 Score=130.07 Aligned_cols=93 Identities=14% Similarity=0.344 Sum_probs=81.6
Q ss_pred ccEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCcCeEEEEEecc-eeeeeccCCCCCCcccceeEEEEE
Q 003259 294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-LTRRTDARPGSDPRWDSMFNMVLH 372 (835)
Q Consensus 294 ~GvL~V~V~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~~~~dpyv~v~~g~-~~~t~~i~~~~nP~W~etf~~~v~ 372 (835)
.|.|+|+|++|++|+..+. +++ ||||.++++. ..+|++++++.||+|||+|.|.+.
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~s----------------------DPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~ 57 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSS----------------------DPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVP 57 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCc----------------------CcEEEEEECCEEEEeeeEcCCCCCeecccEEEEec
Confidence 3999999999999997775 433 9999999984 456777899999999999999999
Q ss_pred cCCceEEEEEEEeCCCCCCcceeEEEEEecccccCCCc
Q 003259 373 EETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDST 410 (835)
Q Consensus 373 ~~~~~L~~~v~d~~~~~~kdd~LG~~~i~L~~L~~~~~ 410 (835)
+..+.|.|+|||++. ..+|++||.+.++++++.....
T Consensus 58 ~~~~~l~~~V~D~d~-~~~dd~iG~a~i~l~~l~~~~~ 94 (145)
T cd04038 58 NPMAPLKLEVFDKDT-FSKDDSMGEAEIDLEPLVEAAK 94 (145)
T ss_pred CCCCEEEEEEEECCC-CCCCCEEEEEEEEHHHhhhhhh
Confidence 888899999999997 6788999999999999887543
No 155
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.51 E-value=8.3e-14 Score=134.03 Aligned_cols=104 Identities=18% Similarity=0.263 Sum_probs=88.6
Q ss_pred EEEEEEEeecCCCCCCC--------------CCCCcEEEEEECCeEeecccc-CCCCCccceEEEEEeeCC--ceeEEEE
Q 003259 490 INVTVVEGKDLMPKDKS--------------GKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVK 552 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~~--------------g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne~f~f~v~~~--~~~L~i~ 552 (835)
|.|+|++|++|+.++.. +.+||||+|.++++..+|+++ ++.||+|||+|.|.+..+ ...|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 78999999999988744 368999999999999999999 999999999999986543 6789999
Q ss_pred EEEeccC-CCceEEEEEEeccccccCCe-------eeeEEecccCCCce
Q 003259 553 CYNEEIF-GDENMGSARVNLEGLVEGSV-------RDIWVPLEKVNTGE 593 (835)
Q Consensus 553 V~d~d~~-~d~~IG~~~i~L~~l~~~~~-------~~~w~~L~~~~~G~ 593 (835)
|||++.. +|++||++.+++.++..... ...|+.|.+...+.
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~ 130 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREY 130 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccc
Confidence 9999988 99999999999999876542 35788887655443
No 156
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.51 E-value=2.1e-13 Score=127.68 Aligned_cols=100 Identities=19% Similarity=0.374 Sum_probs=88.7
Q ss_pred EEEEEEEEeecCCCCC-CCCCCCcEEEEEE---CCeEeecccc-CCCCCccceEEEEEeeCC---ceeEEEEEEEeccC-
Q 003259 489 KINVTVVEGKDLMPKD-KSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF- 559 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~-~~g~~dpyv~v~l---g~~~~kT~~~-~t~nP~Wne~f~f~v~~~---~~~L~i~V~d~d~~- 559 (835)
.|.|+|++|++|+..+ ..+.+||||++++ +...++|+++ ++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~ 94 (123)
T cd08390 15 QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFS 94 (123)
T ss_pred EEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCC
Confidence 8999999999999887 6789999999998 3467899999 999999999999996553 45899999999887
Q ss_pred CCceEEEEEEeccccccCCeeeeEEeccc
Q 003259 560 GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (835)
Q Consensus 560 ~d~~IG~~~i~L~~l~~~~~~~~w~~L~~ 588 (835)
++++||++.++|.++........|++|++
T Consensus 95 ~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 95 RHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred CCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 78999999999999998888889999863
No 157
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.51 E-value=9.7e-14 Score=127.45 Aligned_cols=100 Identities=26% Similarity=0.408 Sum_probs=87.3
Q ss_pred CCCCCCCcEEEEEECC-eEeecccc-CCCCCccceEEEEEeeCC-ceeEEEEEEEeccCCCceEEEEEEeccccccC-Ce
Q 003259 504 DKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENMGSARVNLEGLVEG-SV 579 (835)
Q Consensus 504 ~~~g~~dpyv~v~lg~-~~~kT~~~-~t~nP~Wne~f~f~v~~~-~~~L~i~V~d~d~~~d~~IG~~~i~L~~l~~~-~~ 579 (835)
...|.+||||++++++ ..++|+++ ++.||.|||.|.|.+.+. ...|.|.|+|++..++++||.+.++|.++... ..
T Consensus 8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 8 SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred ccCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhc
Confidence 3578899999999976 46899999 999999999999998765 67899999999877899999999999998654 34
Q ss_pred eeeEEecccCCCceEEEEEEEeec
Q 003259 580 RDIWVPLEKVNTGELRLQIEATRV 603 (835)
Q Consensus 580 ~~~w~~L~~~~~G~I~l~l~~~~~ 603 (835)
...||+|.+...|+|++++.|.|+
T Consensus 88 ~~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 88 GQQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred cceeEECCCCCCCEEEEEEEEecC
Confidence 579999998778999999999863
No 158
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.50 E-value=2.1e-13 Score=126.97 Aligned_cols=107 Identities=21% Similarity=0.314 Sum_probs=92.9
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeecccc-CCCCCccceEEEEEeeCCceeEEEEEEEeccC-CCceE
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENM 564 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~-~~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~-~d~~I 564 (835)
|.|.|+|++|++|+..+..+.+||||++++++ ..++|+++ ++.||.|||+|.|.+......|.|+|||++.. ++++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 47999999999999888889999999999965 67999999 99999999999998777778999999999987 78999
Q ss_pred EEEEEeccccccCCeeeeEEecccCCCceEE
Q 003259 565 GSARVNLEGLVEGSVRDIWVPLEKVNTGELR 595 (835)
Q Consensus 565 G~~~i~L~~l~~~~~~~~w~~L~~~~~G~I~ 595 (835)
|++.+++.++..+ ....||.|.+.+.+++.
T Consensus 81 G~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~ 110 (120)
T cd04045 81 GSVEINVSDLIKK-NEDGKYVEYDDEEERLK 110 (120)
T ss_pred eEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence 9999999999887 44678877765555443
No 159
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.49 E-value=1.9e-13 Score=125.53 Aligned_cols=97 Identities=20% Similarity=0.377 Sum_probs=85.7
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCccceEEEEEeeCC-----ceeEEEEEEEeccC-C
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-----GECLMVKCYNEEIF-G 560 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne~f~f~v~~~-----~~~L~i~V~d~d~~-~ 560 (835)
+.|+|+|++|++|. .|.+||||+++++++.++|+++ ++.||.|||+|.|.+..+ ...|.|+|||++.. +
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~ 79 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRS 79 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccccc
Confidence 47999999999997 5789999999999999999999 999999999999986543 35899999999887 7
Q ss_pred CceEEEEEEeccccccCC---eeeeEEeccc
Q 003259 561 DENMGSARVNLEGLVEGS---VRDIWVPLEK 588 (835)
Q Consensus 561 d~~IG~~~i~L~~l~~~~---~~~~w~~L~~ 588 (835)
+++||++.++|.++..+. ....|++|.+
T Consensus 80 ~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 80 DTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred CCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 899999999999997664 4578999865
No 160
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.48 E-value=4e-13 Score=126.02 Aligned_cols=102 Identities=27% Similarity=0.430 Sum_probs=92.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-C-CCCCccceEEEEEeeCC----ceeEEEEEEEeccC-C
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGG----GECLMVKCYNEEIF-G 560 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~~kT~~~-~-t~nP~Wne~f~f~v~~~----~~~L~i~V~d~d~~-~ 560 (835)
|.|.|+|.+|++|+..+..+.+||||++++++..++|++. + +.||.|||+|.|.+..+ ...|.|+|||++.. +
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 4799999999999988888899999999999888999988 4 89999999999998775 56899999999887 8
Q ss_pred CceEEEEEEeccccccCCeeeeEEecccC
Q 003259 561 DENMGSARVNLEGLVEGSVRDIWVPLEKV 589 (835)
Q Consensus 561 d~~IG~~~i~L~~l~~~~~~~~w~~L~~~ 589 (835)
+++||++.+++.++..+.....|++|...
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 99999999999999987777899999874
No 161
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.48 E-value=1.8e-13 Score=128.64 Aligned_cols=107 Identities=24% Similarity=0.361 Sum_probs=92.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeecccc--CCCCCccceEEEEEeeCC-----ceeEEEEEEEeccC-
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA--HSPNHVWNQKFELDEIGG-----GECLMVKCYNEEIF- 559 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~-~~~kT~~~--~t~nP~Wne~f~f~v~~~-----~~~L~i~V~d~d~~- 559 (835)
.|.|+|++|++|+..+..+.+||||++++++ +.++|++. ++.||.|||.|.|.+... ...|.|+|||++..
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 3899999999999888889999999999977 88999997 589999999999998766 57999999999886
Q ss_pred CCceEEEEEEeccccccCCe-----eeeEEecccC---CCceEE
Q 003259 560 GDENMGSARVNLEGLVEGSV-----RDIWVPLEKV---NTGELR 595 (835)
Q Consensus 560 ~d~~IG~~~i~L~~l~~~~~-----~~~w~~L~~~---~~G~I~ 595 (835)
++++||++.+++.++..+.. ...||+|... ..|.|+
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~ 124 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLN 124 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEe
Confidence 88999999999999987653 3689999753 356665
No 162
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.48 E-value=3.6e-13 Score=127.63 Aligned_cols=105 Identities=32% Similarity=0.508 Sum_probs=93.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCccceEEEEEeeCC--ceeEEEEEEEeccC-
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF- 559 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~Wne~f~f~v~~~--~~~L~i~V~d~d~~- 559 (835)
.|+|+|++|++|+..+..+.+||||++.+. ...++|+++ ++.+|.|||+|.|.+... ...|.|.|||++..
T Consensus 14 ~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~ 93 (131)
T cd04026 14 KLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTT 93 (131)
T ss_pred EEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCCC
Confidence 799999999999988888899999999994 368999999 999999999999997653 56899999999877
Q ss_pred CCceEEEEEEeccccccCCeeeeEEecccCCCceE
Q 003259 560 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGEL 594 (835)
Q Consensus 560 ~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~~~G~I 594 (835)
++++||++.+++.++... ....||+|.+.+.|+.
T Consensus 94 ~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 94 RNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY 127 (131)
T ss_pred CcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence 889999999999999865 6678999998888865
No 163
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.46 E-value=3.4e-13 Score=126.01 Aligned_cols=90 Identities=21% Similarity=0.289 Sum_probs=75.4
Q ss_pred cccEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCcCeEEEEEec-ceeeeeccCCCCCCcccceeEEEE
Q 003259 293 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDARPGSDPRWDSMFNMVL 371 (835)
Q Consensus 293 ~~GvL~V~V~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~~~~dpyv~v~~g-~~~~t~~i~~~~nP~W~etf~~~v 371 (835)
..|.|+|+|++|++|+. +..|. +||||+|+++ ...+|++++++.||+|||+|.|..
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~----------------------~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~ 82 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTS----------------------TDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGS 82 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCC----------------------CCeEEEEEECCccccCceecCCCCCcCCCEEEEec
Confidence 46999999999999974 44443 3999999996 456788889999999999999974
Q ss_pred Ec--CCceEEEEEEEeCCCCCCcceeEEEEEeccccc
Q 003259 372 HE--ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA 406 (835)
Q Consensus 372 ~~--~~~~L~~~v~d~~~~~~kdd~LG~~~i~L~~L~ 406 (835)
.. ..+.|.|+|||++. ..+|++||++.++|....
T Consensus 83 ~~~~~~~~L~v~V~D~d~-~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 83 VELSPGGKLRFEVWDRDN-GWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred ccCCCCCEEEEEEEeCCC-CCCCCeeEEEEEEecCCc
Confidence 33 36899999999997 578999999999998655
No 164
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.46 E-value=7.6e-13 Score=126.01 Aligned_cols=110 Identities=18% Similarity=0.390 Sum_probs=93.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-eecccc-CCCCCccceEEEEEeeCCceeEEEEEEEeccC-----CC
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIV-QRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-----GD 561 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~-~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~-----~d 561 (835)
.|.|.|.+|++|+.++ +|||+|.+++.. .||+++ ++.||.|+|.|+|....+...+.|.|++.+.. ++
T Consensus 12 sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~ 86 (146)
T cd04013 12 SLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKS 86 (146)
T ss_pred EEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccCC
Confidence 6999999999998764 899999998765 699999 99999999999998666667799999765432 57
Q ss_pred ceEEEEEEeccccccCCeeeeEEecccCC-------------CceEEEEEEEeec
Q 003259 562 ENMGSARVNLEGLVEGSVRDIWVPLEKVN-------------TGELRLQIEATRV 603 (835)
Q Consensus 562 ~~IG~~~i~L~~l~~~~~~~~w~~L~~~~-------------~G~I~l~l~~~~~ 603 (835)
.+||.+.|++.++..+...+.||+|.+.. .+.|++++.|.++
T Consensus 87 ~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 87 QLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred cEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 89999999999999888889999996532 2689999998864
No 165
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.45 E-value=6.2e-13 Score=122.94 Aligned_cols=100 Identities=30% Similarity=0.500 Sum_probs=89.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeEeecccc-CCCCCccceEEEEEeeC-CceeEEEEEEEeccC-CCceEE
Q 003259 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDENMG 565 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~~g~~dpyv~v~lg-~~~~kT~~~-~t~nP~Wne~f~f~v~~-~~~~L~i~V~d~d~~-~d~~IG 565 (835)
|+|+|++|++|+..+..+.+||||+++++ ...++|+++ ++.+|.|||+|.|.+.. ....+.|+|||++.. ++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 57899999999988888899999999995 467899999 99999999999999776 467899999999877 789999
Q ss_pred EEEEeccccccCCeeeeEEecccC
Q 003259 566 SARVNLEGLVEGSVRDIWVPLEKV 589 (835)
Q Consensus 566 ~~~i~L~~l~~~~~~~~w~~L~~~ 589 (835)
++.+++.++..+.....|++|.+.
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~ 104 (115)
T cd04040 81 SAYIDLSDLEPEETTELTLPLDGQ 104 (115)
T ss_pred EEEEEHHHcCCCCcEEEEEECcCC
Confidence 999999999888888899999864
No 166
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.45 E-value=9.4e-13 Score=124.17 Aligned_cols=109 Identities=24% Similarity=0.347 Sum_probs=91.2
Q ss_pred eEEEEEEEEeecCCcCC--cCCCCCCEEEEEEC------CeEeeeeeecCCC-CCeeeeEEEeecC---CCcEEEEEEEC
Q 003259 619 GWIELVIVEARDLVAAD--LRGTSDPYVKVQYG------DLKKRTKVIFKTL-NPQWHQTLEFPDD---GSPLTLHVRDH 686 (835)
Q Consensus 619 g~L~v~v~~a~~L~~~d--~~g~~DPyv~v~~~------~~~~kT~v~~~t~-nP~wne~f~f~v~---~~~L~i~V~d~ 686 (835)
-.|+|+|++|++|+..+ ..+..||||++++. ..+.+|+++.++. ||+|||+|.|.+. ...|.++|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 36899999999999887 57899999999993 4568999988775 9999999999964 24699999999
Q ss_pred CCCCCCCeEEEEEEEccccCCCCceeeEEecCC-----CCCcEEEEEEEE
Q 003259 687 NALLASSSIGDCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLITR 731 (835)
Q Consensus 687 d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~l~~ 731 (835)
+.. ++++||++.++++++..+ ..|++|.+ ...|.|.+.+++
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 988 899999999999999654 36788853 345888888875
No 167
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.45 E-value=2.1e-13 Score=172.16 Aligned_cols=114 Identities=18% Similarity=0.358 Sum_probs=101.5
Q ss_pred CCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECCe-EeeeeeecCCCCCeeeeEEEeecC----CCcEEEEEEECCCC
Q 003259 615 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD----GSPLTLHVRDHNAL 689 (835)
Q Consensus 615 ~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~----~~~L~i~V~d~d~~ 689 (835)
..-.|.|+|+|++|+||. +..|.+||||++.+|++ +.||++++++.||+|||.|.|.+. +..|.|+|||+|.+
T Consensus 1976 ~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred hhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence 345799999999999998 55789999999999965 889999999999999999997653 36799999999999
Q ss_pred CCCCeEEEEEEEccccCCCCceeeEEecCC--CCCcE---EEEEEEE
Q 003259 690 LASSSIGDCVVEYQRLPPNQMADKWIPLQG--VRKGE---IHVLITR 731 (835)
Q Consensus 690 ~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~--~~~G~---i~l~l~~ 731 (835)
++| .||++.+++.++..+.....||+|.+ .+.|+ |++.+.|
T Consensus 2054 ~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w 2099 (2102)
T PLN03200 2054 GKS-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQW 2099 (2102)
T ss_pred CCC-CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEe
Confidence 655 99999999999998899999999975 67899 9999887
No 168
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.44 E-value=1.8e-12 Score=124.81 Aligned_cols=113 Identities=24% Similarity=0.307 Sum_probs=93.3
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE-----CCeEeecccc-CCCCCccceEEEEEeeCC---------ceeEEEE
Q 003259 490 INVTVVEGKD--LMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG---------GECLMVK 552 (835)
Q Consensus 490 L~V~V~~a~~--L~~~~~~g~~dpyv~v~l-----g~~~~kT~~~-~t~nP~Wne~f~f~v~~~---------~~~L~i~ 552 (835)
..++|..|++ |+..+..+.+||||++++ +.+.+||+++ +|.||+|||+|.|.+... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4566666666 677777889999999997 2478999999 999999999999997543 3579999
Q ss_pred EEEeccC--CCceEEEEEEeccccccCCeeeeEEecccC---CCceEEEEEEEee
Q 003259 553 CYNEEIF--GDENMGSARVNLEGLVEGSVRDIWVPLEKV---NTGELRLQIEATR 602 (835)
Q Consensus 553 V~d~d~~--~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~---~~G~I~l~l~~~~ 602 (835)
|||++.+ +|++||++.++|+.+........|++|-.. ..|+|++++....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecC
Confidence 9999876 799999999999999887777789998632 3699999998763
No 169
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.43 E-value=1.5e-12 Score=120.70 Aligned_cols=105 Identities=28% Similarity=0.467 Sum_probs=84.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-Eeecccc-CCCCCccceEEEEEeeC---CceeEEEEEEEeccC-CCce
Q 003259 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-GDEN 563 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~-~~kT~~~-~t~nP~Wne~f~f~v~~---~~~~L~i~V~d~d~~-~d~~ 563 (835)
|.|+|++|++|+.. +.+||||+++++++ .++|+++ + .||.|||+|.|.+.. ....|.+.+||++.. ++..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999865 78999999999764 5899999 9 999999999999776 346788888888765 5566
Q ss_pred EEEEEEeccccccCCeeeeEEecccCC-----CceEEEEEEE
Q 003259 564 MGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEA 600 (835)
Q Consensus 564 IG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~~ 600 (835)
+|.+.+ ..+..+.....||+|.+.. .|+|++.+.|
T Consensus 78 ~g~v~l--~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVAL--SKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEe--cCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 666555 4444466678999998643 6999998865
No 170
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.43 E-value=6.5e-13 Score=126.56 Aligned_cols=100 Identities=26% Similarity=0.529 Sum_probs=89.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEeecccc-CCCCCccceEEEEEeeCC----------------cee
Q 003259 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYG----KIVQRTRTA-HSPNHVWNQKFELDEIGG----------------GEC 548 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~~g~~dpyv~v~lg----~~~~kT~~~-~t~nP~Wne~f~f~v~~~----------------~~~ 548 (835)
|.|+|++|++|+.+ ..+.+||||+++++ +..++|+++ ++.||.|||+|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999887 78899999999997 788999999 999999999999997653 458
Q ss_pred EEEEEEEeccC-CCceEEEEEEeccccccCCeeeeEEecccCC
Q 003259 549 LMVKCYNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN 590 (835)
Q Consensus 549 L~i~V~d~d~~-~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~~ 590 (835)
|.|+|||++.. ++++||++.+++.++........||+|.+.+
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 99999999987 8999999999999998777778999998753
No 171
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.43 E-value=5.3e-13 Score=126.65 Aligned_cols=97 Identities=19% Similarity=0.300 Sum_probs=80.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE---CC--eEeecccc-CCCCCccceEEEEEeeC---CceeEEEEEEEeccC
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY---GK--IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF 559 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~l---g~--~~~kT~~~-~t~nP~Wne~f~f~v~~---~~~~L~i~V~d~d~~ 559 (835)
.|.|+|++|+||+..+..|.+||||++++ ++ .+.||+++ ++.||+|||+|.|.+.. .+..|.|.|||++..
T Consensus 16 ~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~ 95 (136)
T cd08406 16 RLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTED 95 (136)
T ss_pred EEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCC
Confidence 79999999999999888899999999999 22 26689999 99999999999999765 367899999999977
Q ss_pred -CCceEEEEEEeccccccCCeeeeEEecc
Q 003259 560 -GDENMGSARVNLEGLVEGSVRDIWVPLE 587 (835)
Q Consensus 560 -~d~~IG~~~i~L~~l~~~~~~~~w~~L~ 587 (835)
++++||++.+.... .+....+|..+-
T Consensus 96 ~~~~~iG~v~lg~~~--~g~~~~hW~~ml 122 (136)
T cd08406 96 GKTPNVGHVIIGPAA--SGMGLSHWNQML 122 (136)
T ss_pred CCCCeeEEEEECCCC--CChhHHHHHHHH
Confidence 89999999997654 334445665553
No 172
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.43 E-value=7.2e-13 Score=127.74 Aligned_cols=95 Identities=28% Similarity=0.494 Sum_probs=83.8
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------eEeecccc-CCCCCccceE
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----------------------------IVQRTRTA-HSPNHVWNQK 537 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~-----------------------------~~~kT~~~-~t~nP~Wne~ 537 (835)
+.|.|+|++|++|...+..|.+||||+++++. ..++|+++ ++.||.|||+
T Consensus 28 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~ 107 (153)
T cd08676 28 FVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNET 107 (153)
T ss_pred EEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccccE
Confidence 48999999999999999999999999999842 24789999 9999999999
Q ss_pred EEEEeeCC-ceeEEEEEEEeccCCCceEEEEEEeccccccCCeeeeEEec
Q 003259 538 FELDEIGG-GECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPL 586 (835)
Q Consensus 538 f~f~v~~~-~~~L~i~V~d~d~~~d~~IG~~~i~L~~l~~~~~~~~w~~L 586 (835)
|.|.+... ...|.|+|||++ +++||++.++++++.. ...+.||+|
T Consensus 108 F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 108 FRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred EEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 99998663 678999999987 8999999999999983 456899986
No 173
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.42 E-value=8.7e-13 Score=125.09 Aligned_cols=96 Identities=21% Similarity=0.335 Sum_probs=79.1
Q ss_pred EEEEEEEEeecCCCCCC--CCCCCcEEEEEEC--C---eEeecccc-CCCCCccceEEEEEeeCC---ceeEEEEEEEec
Q 003259 489 KINVTVVEGKDLMPKDK--SGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE 557 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~--~g~~dpyv~v~lg--~---~~~kT~~~-~t~nP~Wne~f~f~v~~~---~~~L~i~V~d~d 557 (835)
.|.|+|++|+||...+. .+.+||||++++. + .+.||+++ ++.||+|||+|.|.+... +..|.|+|||++
T Consensus 16 ~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d 95 (138)
T cd08407 16 RLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQD 95 (138)
T ss_pred eEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCC
Confidence 79999999999988873 3559999999992 1 36789999 999999999999997653 678999999999
Q ss_pred cC-CCceEEEEEEeccccccCCeeeeEEec
Q 003259 558 IF-GDENMGSARVNLEGLVEGSVRDIWVPL 586 (835)
Q Consensus 558 ~~-~d~~IG~~~i~L~~l~~~~~~~~w~~L 586 (835)
.. ++++||++.+.+.. .+....+|..+
T Consensus 96 ~~~~~d~iG~v~lg~~~--~g~~~~hW~~m 123 (138)
T cd08407 96 SPGQSLPLGRCSLGLHT--SGTERQHWEEM 123 (138)
T ss_pred CCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence 88 89999999999975 33344456544
No 174
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.42 E-value=1e-12 Score=120.48 Aligned_cols=85 Identities=27% Similarity=0.446 Sum_probs=74.3
Q ss_pred EEEEEeecCCcCCcCCCCCCEEEEEECC------eEeeeeeecCCCCCeeeeEEEeecC-------CCcEEEEEEECCCC
Q 003259 623 LVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFKTLNPQWHQTLEFPDD-------GSPLTLHVRDHNAL 689 (835)
Q Consensus 623 v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v~~~t~nP~wne~f~f~v~-------~~~L~i~V~d~d~~ 689 (835)
+..++|++|+..+..|.+||||++++.+ ..++|+++++++||+|| .|.|+.. ...|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 3456999999999999999999999844 25899999999999999 6888742 56899999999999
Q ss_pred CCCCeEEEEEEEccccCCC
Q 003259 690 LASSSIGDCVVEYQRLPPN 708 (835)
Q Consensus 690 ~~d~~iG~~~i~l~~l~~~ 708 (835)
++|++||++.++++++..+
T Consensus 83 ~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 83 GKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCcEEEEEEEEHHHHhcC
Confidence 9999999999999999743
No 175
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.40 E-value=1.4e-12 Score=124.49 Aligned_cols=98 Identities=24% Similarity=0.387 Sum_probs=84.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---eEeecccc-CCCCCccceEEEEEeeC---CceeEEEEEEEeccC
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF 559 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~l--g~---~~~kT~~~-~t~nP~Wne~f~f~v~~---~~~~L~i~V~d~d~~ 559 (835)
.|.|+|++|++|+..+..|.+||||++++ ++ ..++|+++ ++.||.|||+|.|.+.. ....|.|+|||++..
T Consensus 16 ~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~ 95 (136)
T cd08404 16 RLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRV 95 (136)
T ss_pred eEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCC
Confidence 79999999999999888899999999998 22 36789999 99999999999999754 355799999999988
Q ss_pred -CCceEEEEEEeccccccCCeeeeEEeccc
Q 003259 560 -GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (835)
Q Consensus 560 -~d~~IG~~~i~L~~l~~~~~~~~w~~L~~ 588 (835)
++++||++.+++.. .+.....|+.+..
T Consensus 96 ~~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 96 TKNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred CCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 89999999999988 3445678888754
No 176
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.40 E-value=2.7e-12 Score=121.89 Aligned_cols=88 Identities=19% Similarity=0.416 Sum_probs=78.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEeecccc-CCCCCccceEEEEEeeC-----CceeEEEEEEE
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG-------KIVQRTRTA-HSPNHVWNQKFELDEIG-----GGECLMVKCYN 555 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg-------~~~~kT~~~-~t~nP~Wne~f~f~v~~-----~~~~L~i~V~d 555 (835)
.|.|+|++|++|+..+..+.+||||+|++. ...++|+++ ++.||.|||+|.|.+.. ....|.|+|||
T Consensus 17 ~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d 96 (133)
T cd04009 17 SLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKD 96 (133)
T ss_pred EEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEe
Confidence 799999999999988888999999999993 357999999 99999999999999764 24589999999
Q ss_pred eccC-CCceEEEEEEecccccc
Q 003259 556 EEIF-GDENMGSARVNLEGLVE 576 (835)
Q Consensus 556 ~d~~-~d~~IG~~~i~L~~l~~ 576 (835)
++.. ++++||++.++|+++..
T Consensus 97 ~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 97 YDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred cCCCCCCcEeEEEEEeHHHCCc
Confidence 9988 69999999999999874
No 177
>PLN03008 Phospholipase D delta
Probab=99.40 E-value=1.7e-12 Score=150.71 Aligned_cols=99 Identities=21% Similarity=0.444 Sum_probs=89.0
Q ss_pred CCCCcEEEEEECCe-Eeecccc-CCCCCccceEEEEEeeCCceeEEEEEEEeccCCCceEEEEEEeccccccCCeeeeEE
Q 003259 507 GKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWV 584 (835)
Q Consensus 507 g~~dpyv~v~lg~~-~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~~d~~IG~~~i~L~~l~~~~~~~~w~ 584 (835)
+.+||||+|.++++ +.||+++ ++.||+|||+|.|.+..+...|.|.|+|+|.+++++||++.++++++..+...+.|+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl 154 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWF 154 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEE
Confidence 46799999999764 6799999 999999999999998888889999999999998899999999999999998889999
Q ss_pred ecccC------CCceEEEEEEEeecCC
Q 003259 585 PLEKV------NTGELRLQIEATRVDD 605 (835)
Q Consensus 585 ~L~~~------~~G~I~l~l~~~~~~~ 605 (835)
+|.+. +.|+|+++++|+|+..
T Consensus 155 ~Ll~~~~kp~k~~~kl~v~lqf~pv~~ 181 (868)
T PLN03008 155 PVLGASGKPPKAETAIFIDMKFTPFDQ 181 (868)
T ss_pred EccccCCCCCCCCcEEEEEEEEEEccc
Confidence 99653 2589999999999764
No 178
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.39 E-value=1.8e-12 Score=121.54 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=76.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCcCeEEEEEecce---eeeeccCCCCCCcccceeEEEEE
Q 003259 296 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL---TRRTDARPGSDPRWDSMFNMVLH 372 (835)
Q Consensus 296 vL~V~V~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~~~~dpyv~v~~g~~---~~t~~i~~~~nP~W~etf~~~v~ 372 (835)
+|+|+|++|++|+..+..|++ ||||+|+++.. .+|+.++++.||+|||+|.|.+.
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~----------------------DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~ 58 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKS----------------------DPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEAT 58 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCC----------------------CcEEEEEECCeeccceeeEEECCCCCccceEEEEEec
Confidence 589999999999988866644 99999999743 46777889999999999999876
Q ss_pred cC-CceEEEEEEEeCCCCCCcceeEEEEEecccccC
Q 003259 373 EE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD 407 (835)
Q Consensus 373 ~~-~~~L~~~v~d~~~~~~kdd~LG~~~i~L~~L~~ 407 (835)
.. .+.|.|+|||.+. ..+|++||++.++|.+...
T Consensus 59 ~~~~~~L~~~V~d~d~-~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 59 LPGNSILKISVMDYDL-LGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCCCEEEEEEEECCC-CCCCceeEEEEEeeccccc
Confidence 54 6799999999987 5789999999999987653
No 179
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.39 E-value=4.1e-12 Score=120.46 Aligned_cols=108 Identities=19% Similarity=0.303 Sum_probs=88.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------------CeEeecccc-CCCCCcc-ceEEEEEeeCCceeEEEEE
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG-------------KIVQRTRTA-HSPNHVW-NQKFELDEIGGGECLMVKC 553 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg-------------~~~~kT~~~-~t~nP~W-ne~f~f~v~~~~~~L~i~V 553 (835)
...|++.+|++|+ ++..|.+||||++++. ++.++|+++ ++.||.| ||+|.|.+. ..+.|.++|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEEEEE
Confidence 4689999999998 6778999999999992 247999999 9999999 999999874 456899999
Q ss_pred EEeccC----CCceEEEEEEeccccccCC---eeeeEEecccCC-----CceEEEEE
Q 003259 554 YNEEIF----GDENMGSARVNLEGLVEGS---VRDIWVPLEKVN-----TGELRLQI 598 (835)
Q Consensus 554 ~d~d~~----~d~~IG~~~i~L~~l~~~~---~~~~w~~L~~~~-----~G~I~l~l 598 (835)
||++.. .+++||++.+++.++..+. ....||+|+... +|+|.+.+
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 997653 2799999999999998664 456899987643 47766654
No 180
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.38 E-value=1.9e-12 Score=117.68 Aligned_cols=78 Identities=21% Similarity=0.378 Sum_probs=64.6
Q ss_pred EEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCcCeEEEEEec------ceeeeeccCCCCCCcccceeEEE
Q 003259 297 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDARPGSDPRWDSMFNMV 370 (835)
Q Consensus 297 L~V~V~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~~~~dpyv~v~~g------~~~~t~~i~~~~nP~W~etf~~~ 370 (835)
|.|+|++|+||++ .+ ||||++.+. ...+|+++++|+||+|||+|+|.
T Consensus 1 L~V~V~~A~~L~~-----~s----------------------DPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~ 53 (118)
T cd08686 1 LNVIVHSAQGFKQ-----SA----------------------NLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIE 53 (118)
T ss_pred CEEEEEeCCCCCC-----CC----------------------CCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEE
Confidence 6899999999962 22 899999884 24788999999999999999999
Q ss_pred EEcCCceEEEEEEEeCC------CCCCcceeEEEEEec
Q 003259 371 LHEETGTVRFNLYECIP------GHVKYDYLTSCEVKM 402 (835)
Q Consensus 371 v~~~~~~L~~~v~d~~~------~~~kdd~LG~~~i~L 402 (835)
+.+ .+.|++.|||.+. ...+|+++|++.+.|
T Consensus 54 l~~-s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~L 90 (118)
T cd08686 54 LEG-SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQL 90 (118)
T ss_pred eCC-CCEEEEEEEEcccccccccccCcccEEEEEEEEE
Confidence 975 7899999999841 136788998887776
No 181
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.38 E-value=4.8e-12 Score=118.77 Aligned_cols=108 Identities=25% Similarity=0.405 Sum_probs=88.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-Eeecccc-CCCCCccceEEEEEeeCCceeEEEEEEEeccC-CCceEE
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG 565 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~-~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~-~d~~IG 565 (835)
.|.|+|.+|+ |...+..+.+||||+++++++ .++|+++ ++.||.|||+|.|.+. ....|.|+|||++.. .+++||
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEEE
Confidence 6999999998 544555788999999999776 8999999 9999999999999864 456899999999987 889999
Q ss_pred EEEEeccccccCCe-----eeeEEecccCC------CceEEEEE
Q 003259 566 SARVNLEGLVEGSV-----RDIWVPLEKVN------TGELRLQI 598 (835)
Q Consensus 566 ~~~i~L~~l~~~~~-----~~~w~~L~~~~------~G~I~l~l 598 (835)
++.++|.++..... ...|+++...+ .|+|.+.+
T Consensus 81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 81 EASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999886432 23578875332 56666654
No 182
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.38 E-value=6.7e-12 Score=117.56 Aligned_cols=97 Identities=26% Similarity=0.422 Sum_probs=82.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCccceEEEEEeeCC----ceeEEEEEEEecc
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYNEEI 558 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~Wne~f~f~v~~~----~~~L~i~V~d~d~ 558 (835)
.|.|+|++|++|+..+..+.+||||++++. ...++|+++ ++.||.|||+|.|..... ...+.|+|||++.
T Consensus 16 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~ 95 (123)
T cd04035 16 ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR 95 (123)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC
Confidence 799999999999988888899999999982 247899999 999999999999963332 4689999999987
Q ss_pred CCCceEEEEEEeccccccCCeeeeEEe
Q 003259 559 FGDENMGSARVNLEGLVEGSVRDIWVP 585 (835)
Q Consensus 559 ~~d~~IG~~~i~L~~l~~~~~~~~w~~ 585 (835)
.++++||++.+++.++..+.....|+.
T Consensus 96 ~~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 96 FGNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred cCCeeEEEEEEEcccCCCCcceEeecc
Confidence 678899999999999988776655553
No 183
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.38 E-value=1.7e-12 Score=123.83 Aligned_cols=98 Identities=19% Similarity=0.354 Sum_probs=82.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---eEeecccc-CCCCCccceEEEEEeeC---CceeEEEEEEEeccC
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF 559 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~l--g~---~~~kT~~~-~t~nP~Wne~f~f~v~~---~~~~L~i~V~d~d~~ 559 (835)
.|.|+|++|++|+..+..|.+||||++++ ++ ..++|+++ ++.||.|||+|.|.+.. ....|.|+|||++..
T Consensus 16 ~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~ 95 (136)
T cd08405 16 RITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRL 95 (136)
T ss_pred eEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCC
Confidence 89999999999998888899999999998 32 36789999 99999999999998653 246899999999987
Q ss_pred -CCceEEEEEEeccccccCCeeeeEEeccc
Q 003259 560 -GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (835)
Q Consensus 560 -~d~~IG~~~i~L~~l~~~~~~~~w~~L~~ 588 (835)
++++||++.+++.+. +.....|+.+-.
T Consensus 96 ~~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 96 SRNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred CCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 789999999999875 444456766644
No 184
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.37 E-value=2.2e-12 Score=122.65 Aligned_cols=100 Identities=22% Similarity=0.410 Sum_probs=87.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeecccc-CCCCCccceEEEEEeeCC---ceeEEEEEEEeccC
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF 559 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~-----~~~kT~~~-~t~nP~Wne~f~f~v~~~---~~~L~i~V~d~d~~ 559 (835)
.|.|+|++|++|+..+..+.+||||++++.. ..++|+++ ++.||.|||+|.|.+... ...|.|+|||.+..
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~ 94 (134)
T cd00276 15 RLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSV 94 (134)
T ss_pred EEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCC
Confidence 7999999999999888888999999999932 36799999 999999999999997654 47899999999886
Q ss_pred -CCceEEEEEEeccccccCCeeeeEEecccCC
Q 003259 560 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVN 590 (835)
Q Consensus 560 -~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~~ 590 (835)
++++||.+.+++.+ .+.....|++|....
T Consensus 95 ~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~ 124 (134)
T cd00276 95 GRNEVIGQVVLGPDS--GGEELEHWNEMLASP 124 (134)
T ss_pred CCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence 88999999999999 555667899987654
No 185
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.37 E-value=2.4e-12 Score=122.88 Aligned_cols=99 Identities=21% Similarity=0.348 Sum_probs=82.8
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeecccc-CCCCCccceEEEEEeeCC---ceeEEEEEEEecc
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI 558 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg--~---~~~kT~~~-~t~nP~Wne~f~f~v~~~---~~~L~i~V~d~d~ 558 (835)
+.|.|+|++|++|+..+..|.+||||+++++ + ..++|+++ ++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 15 ~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~ 94 (136)
T cd08402 15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR 94 (136)
T ss_pred CeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC
Confidence 3899999999999998888999999999993 2 46789999 999999999999997543 3479999999998
Q ss_pred C-CCceEEEEEEeccccccCCeeeeEEeccc
Q 003259 559 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (835)
Q Consensus 559 ~-~d~~IG~~~i~L~~l~~~~~~~~w~~L~~ 588 (835)
. ++++||++.+++... +.....|+++-.
T Consensus 95 ~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 95 IGKNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred CCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 7 789999999999763 334456776654
No 186
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.35 E-value=1.9e-12 Score=123.09 Aligned_cols=99 Identities=22% Similarity=0.398 Sum_probs=84.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCccceEEEEEeeCC---ceeEEEEEEEecc
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI 558 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~Wne~f~f~v~~~---~~~L~i~V~d~d~ 558 (835)
+.|.|+|++|++|+..+..|.+||||++++. ...++|+++ ++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 13 ~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~ 92 (133)
T cd08384 13 RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDI 92 (133)
T ss_pred CEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCC
Confidence 3899999999999998888999999999993 247899999 999999999999997653 4689999999987
Q ss_pred C-CCceEEEEEEeccccccCCeeeeEEeccc
Q 003259 559 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (835)
Q Consensus 559 ~-~d~~IG~~~i~L~~l~~~~~~~~w~~L~~ 588 (835)
. ++++||++.+++.. .+.....|+++..
T Consensus 93 ~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 93 GKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred CCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 7 78999999999986 3344567887744
No 187
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.35 E-value=2.9e-12 Score=122.21 Aligned_cols=99 Identities=14% Similarity=0.227 Sum_probs=82.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeecccc-CCCCCccceEEEEEeeCC---ceeEEEEEEEeccC
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF 559 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg--~---~~~kT~~~-~t~nP~Wne~f~f~v~~~---~~~L~i~V~d~d~~ 559 (835)
.|.|+|++|+||+..+ .+.+||||++++. + ..++|+++ ++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 16 ~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~ 94 (137)
T cd08409 16 RLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGV 94 (137)
T ss_pred eEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCC
Confidence 7999999999999888 7889999999982 2 36789999 999999999999997542 46899999999877
Q ss_pred -CCceEEEEEEeccccccCCeeeeEEeccc
Q 003259 560 -GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (835)
Q Consensus 560 -~d~~IG~~~i~L~~l~~~~~~~~w~~L~~ 588 (835)
++++||++.+.......+....+|..+-.
T Consensus 95 ~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 95 RKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred CCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 89999999998766555555566766543
No 188
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.35 E-value=3e-12 Score=121.90 Aligned_cols=90 Identities=19% Similarity=0.322 Sum_probs=73.4
Q ss_pred ccccEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCcCeEEEEEec------ceeeeeccCCCCCCcccc
Q 003259 292 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDARPGSDPRWDS 365 (835)
Q Consensus 292 ~~~GvL~V~V~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~~~~dpyv~v~~g------~~~~t~~i~~~~nP~W~e 365 (835)
+..|.|.|+|++|++|+..+..|.+ ||||+|++. ...+|++++++.||+|||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~----------------------DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE 68 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGS----------------------DPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNE 68 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCC----------------------CeEEEEEEEcCCcccceEcCccccCCCCCccce
Confidence 4569999999999999988866543 999999983 124667788999999999
Q ss_pred eeEEEEEcC---CceEEEEEEEeCCCCCCcceeEEEEEeccc
Q 003259 366 MFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKY 404 (835)
Q Consensus 366 tf~~~v~~~---~~~L~~~v~d~~~~~~kdd~LG~~~i~L~~ 404 (835)
+|.|.+... ...|.|+|||+|. ..++++||.+.+....
T Consensus 69 ~F~f~i~~~~l~~~~l~~~V~d~d~-~~~~~~iG~~~l~~~~ 109 (135)
T cd08410 69 SFSFKVPQEELENVSLVFTVYGHNV-KSSNDFIGRIVIGQYS 109 (135)
T ss_pred eEEEeCCHHHhCCCEEEEEEEeCCC-CCCCcEEEEEEEcCcc
Confidence 999998542 3479999999987 6789999999876533
No 189
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.35 E-value=3.8e-12 Score=121.14 Aligned_cols=99 Identities=21% Similarity=0.393 Sum_probs=81.7
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeecccc-CCCCCccceEEEEEeeCC---ceeEEEEEEEecc
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI 558 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg--~---~~~kT~~~-~t~nP~Wne~f~f~v~~~---~~~L~i~V~d~d~ 558 (835)
+.|+|+|++|++|+..+..|.+||||++++. + ..++|+++ ++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 14 ~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~ 93 (134)
T cd08403 14 GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR 93 (134)
T ss_pred CEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 3899999999999999989999999999982 2 36789999 999999999999986543 3469999999998
Q ss_pred C-CCceEEEEEEeccccccCCeeeeEEeccc
Q 003259 559 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (835)
Q Consensus 559 ~-~d~~IG~~~i~L~~l~~~~~~~~w~~L~~ 588 (835)
. ++++||++.+++.. .+.....|+.+-.
T Consensus 94 ~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~ 122 (134)
T cd08403 94 VGHNELIGVCRVGPNA--DGQGREHWNEMLA 122 (134)
T ss_pred CCCCceeEEEEECCCC--CCchHHHHHHHHH
Confidence 7 79999999998873 2334456776643
No 190
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.34 E-value=5e-13 Score=141.06 Aligned_cols=104 Identities=31% Similarity=0.506 Sum_probs=92.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeecccc-CCCCCccceEEEEEeeCC--ceeEEEEEEEeccC-
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF- 559 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~l-----g~~~~kT~~~-~t~nP~Wne~f~f~v~~~--~~~L~i~V~d~d~~- 559 (835)
.|.|+|.+|+||.++|.+|.+||||++++ +..+++|+++ .++||+|||+|.|.+... +..|.|+|||+|+.
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTs 260 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTS 260 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccc
Confidence 79999999999999999999999999999 3458999999 999999999999997653 77999999999988
Q ss_pred CCceEEEEEEeccccccCCeeeeEEecccCCCce
Q 003259 560 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE 593 (835)
Q Consensus 560 ~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~~~G~ 593 (835)
+++++|+.++.+++|...+ .+.||.|-....|+
T Consensus 261 RNDFMGslSFgisEl~K~p-~~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 261 RNDFMGSLSFGISELQKAP-VDGWYKLLSQEEGE 293 (683)
T ss_pred cccccceecccHHHHhhcc-hhhHHHHhhhhcCc
Confidence 8999999999999997654 45899887766665
No 191
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.34 E-value=8.5e-12 Score=116.67 Aligned_cols=98 Identities=15% Similarity=0.302 Sum_probs=78.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CC--eEeecccc-CCC-CCccceEEEEEeeCC--ceeEEEEEEEecc
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GK--IVQRTRTA-HSP-NHVWNQKFELDEIGG--GECLMVKCYNEEI 558 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l---g~--~~~kT~~~-~t~-nP~Wne~f~f~v~~~--~~~L~i~V~d~d~ 558 (835)
+.|+|+|++|+||++.+..+.+||||+|++ ++ .++||+++ ++. ||.|||+|.|.+..+ +..+.|+|||++.
T Consensus 14 ~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~ 93 (135)
T cd08692 14 SRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSS 93 (135)
T ss_pred CeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCC
Confidence 489999999999988765677899999998 22 47889999 884 699999999998764 5578899999987
Q ss_pred C-CCceEEEEEEeccccccCCeeeeEEec
Q 003259 559 F-GDENMGSARVNLEGLVEGSVRDIWVPL 586 (835)
Q Consensus 559 ~-~d~~IG~~~i~L~~l~~~~~~~~w~~L 586 (835)
. ++++||++.+..+.. .+...++|...
T Consensus 94 ~~~n~~IG~v~lG~~~~-~~~~~~hW~~m 121 (135)
T cd08692 94 VRRKHFLGQVWISSDSS-SSEAVEQWKDT 121 (135)
T ss_pred CcCCceEEEEEECCccC-CchhhhhHHHH
Confidence 6 899999999999763 22233456544
No 192
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.33 E-value=3.3e-12 Score=121.76 Aligned_cols=93 Identities=18% Similarity=0.281 Sum_probs=77.1
Q ss_pred ccccccEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCcCeEEEEEecc-------eeeeeccCCCCCCc
Q 003259 290 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-------LTRRTDARPGSDPR 362 (835)
Q Consensus 290 ~~~~~GvL~V~V~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~~~~dpyv~v~~g~-------~~~t~~i~~~~nP~ 362 (835)
..+..|.|.|+|++|+||+..+..|.+ ||||++.+.+ ..+|++++++.||+
T Consensus 10 Y~~~~~~L~V~VikarnL~~~~~~~~~----------------------dpyVkv~llp~~~~~~~~~kT~v~~~t~nPv 67 (138)
T cd08408 10 YNALTGRLSVEVIKGSNFKNLAMNKAP----------------------DTYVKLTLLNSDGQEISKSKTSIRRGQPDPE 67 (138)
T ss_pred EcCCCCeEEEEEEEecCCCccccCCCC----------------------CeeEEEEEEeCCCcceeeccceeecCCCCCc
Confidence 334569999999999999988766643 9999999942 23677788999999
Q ss_pred ccceeEEEEEcC---CceEEEEEEEeCCCCCCcceeEEEEEecccc
Q 003259 363 WDSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYV 405 (835)
Q Consensus 363 W~etf~~~v~~~---~~~L~~~v~d~~~~~~kdd~LG~~~i~L~~L 405 (835)
|||+|.|.+... +..|.|.|||++. ..++++||++.+++...
T Consensus 68 fnEtF~f~i~~~~l~~~~L~~~V~~~~~-~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 68 FKETFVFQVALFQLSEVTLMFSVYNKRK-MKRKEMIGWFSLGLNSS 112 (138)
T ss_pred EeeeEEEECCHHHhCccEEEEEEEECCC-CCCCcEEEEEEECCcCC
Confidence 999999998753 4599999999997 67899999999988654
No 193
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.31 E-value=1.1e-11 Score=115.45 Aligned_cols=95 Identities=21% Similarity=0.317 Sum_probs=82.5
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEECCe-------Eeecccc-CCCCCccceEEEEEeeC-CceeEEEEEEEecc----C
Q 003259 493 TVVEGKDLMPKDKSGKCDPYVKLQYGKI-------VQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEI----F 559 (835)
Q Consensus 493 ~V~~a~~L~~~~~~g~~dpyv~v~lg~~-------~~kT~~~-~t~nP~Wne~f~f~v~~-~~~~L~i~V~d~d~----~ 559 (835)
-.++|++|+..+..|.+||||++++.+. .++|+++ ++.||.|||+|.|.+.. ....|.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 3478999998888899999999999433 5899999 99999999999998543 46689999999996 5
Q ss_pred -CCceEEEEEEeccccccCCeeeeEEecc
Q 003259 560 -GDENMGSARVNLEGLVEGSVRDIWVPLE 587 (835)
Q Consensus 560 -~d~~IG~~~i~L~~l~~~~~~~~w~~L~ 587 (835)
++++||++.+++.++..+.....|++|.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 8999999999999999887777899884
No 194
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.30 E-value=8.9e-12 Score=107.91 Aligned_cols=79 Identities=35% Similarity=0.572 Sum_probs=72.5
Q ss_pred EEEEEEEeecCCcCCcCCCCCCEEEEEECC---eEeeeeeecCCCCCeeeeEEEeecC---CCcEEEEEEECCCCCCCCe
Q 003259 621 IELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSS 694 (835)
Q Consensus 621 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~---~~~L~i~V~d~d~~~~d~~ 694 (835)
|+|+|++|++|+..+..+..||||++.+++ ..++|++++++.+|.|||+|.|++. ...|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988888999999999976 6799999999999999999999964 4569999999999999999
Q ss_pred EEEEE
Q 003259 695 IGDCV 699 (835)
Q Consensus 695 iG~~~ 699 (835)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 195
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.30 E-value=6.3e-12 Score=159.08 Aligned_cols=112 Identities=21% Similarity=0.416 Sum_probs=100.9
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-Eeecccc-CCCCCccceEEEEEeeCC--ceeEEEEEEEeccCCCce
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIFGDEN 563 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~-~~kT~~~-~t~nP~Wne~f~f~v~~~--~~~L~i~V~d~d~~~d~~ 563 (835)
|.|+|+|++|+||. +..|.+||||++.+|++ +.||+++ ++.||.|||+|.|.+.++ ...++|+|||+|.++++.
T Consensus 1980 G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~ 2057 (2102)
T PLN03200 1980 GSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSS 2057 (2102)
T ss_pred cceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCCC
Confidence 59999999999997 44789999999999855 8899999 999999999999887775 478999999999887779
Q ss_pred EEEEEEeccccccCCeeeeEEeccc--CCCce---EEEEEEEe
Q 003259 564 MGSARVNLEGLVEGSVRDIWVPLEK--VNTGE---LRLQIEAT 601 (835)
Q Consensus 564 IG~~~i~L~~l~~~~~~~~w~~L~~--~~~G~---I~l~l~~~ 601 (835)
+|.+.+++.++..+.....||+|.+ .+.|+ |.+.+.|.
T Consensus 2058 ~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2058 LGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred CceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence 9999999999999888899999986 46799 99999996
No 196
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=4.6e-12 Score=138.72 Aligned_cols=120 Identities=30% Similarity=0.511 Sum_probs=102.8
Q ss_pred ceEEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC--CCcEEEEEEECCCC------
Q 003259 618 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNAL------ 689 (835)
Q Consensus 618 ~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~--~~~L~i~V~d~d~~------ 689 (835)
...++++|++|++|.++|..|++||||.+.+|..+.+|+++...+||+|||.|.|.++ ...|.+.|||.|.-
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklr 373 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLR 373 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999987 46799999998852
Q ss_pred -----CCCCeEEEEEEEccccCCCCceeeEEecCC-----CCCcEEEEEEEEEecCCccc
Q 003259 690 -----LASSSIGDCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLITRKVPELDKR 739 (835)
Q Consensus 690 -----~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~l~~~~p~~~~~ 739 (835)
..|+|+|++.|.+..+.. ..+-||+|+. ..+|.|++.++..+-..++.
T Consensus 374 qkl~resddflgqtvievrtlsg--emdvwynlekrtdksavsgairlhisveikgeekv 431 (1283)
T KOG1011|consen 374 QKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHISVEIKGEEKV 431 (1283)
T ss_pred HHhhhcccccccceeEEEEeccc--chhhhcchhhccchhhccceEEEEEEEEEcCcccc
Confidence 358999999999887753 4789999964 34699998888855444443
No 197
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.27 E-value=2e-11 Score=114.17 Aligned_cols=90 Identities=27% Similarity=0.455 Sum_probs=77.3
Q ss_pred EEEEEEEeecCCcCC--cCC--CCCCEEEEEECC---eEeeeeeecCCCC--CeeeeEEEeecC----------------
Q 003259 621 IELVIVEARDLVAAD--LRG--TSDPYVKVQYGD---LKKRTKVIFKTLN--PQWHQTLEFPDD---------------- 675 (835)
Q Consensus 621 L~v~v~~a~~L~~~d--~~g--~~DPyv~v~~~~---~~~kT~v~~~t~n--P~wne~f~f~v~---------------- 675 (835)
|||.|.+|++++..+ ..| .+||||++.+.+ .+++|.|+++++| |+||+.|.|++.
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966543 356 499999999954 5789999999999 999999998852
Q ss_pred ----------CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCc
Q 003259 676 ----------GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQM 710 (835)
Q Consensus 676 ----------~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~ 710 (835)
...|.++|||+|.+++|++||++.++|..+..+..
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~ 126 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK 126 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence 36899999999999999999999999998876543
No 198
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.26 E-value=7.9e-11 Score=110.97 Aligned_cols=109 Identities=27% Similarity=0.442 Sum_probs=88.6
Q ss_pred EEEEEEEEeecCCCCC--CCCCCCcEEEEEE------CCeEeecccc-CCC-CCccceEEEEEeeCC-ceeEEEEEEEec
Q 003259 489 KINVTVVEGKDLMPKD--KSGKCDPYVKLQY------GKIVQRTRTA-HSP-NHVWNQKFELDEIGG-GECLMVKCYNEE 557 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~--~~g~~dpyv~v~l------g~~~~kT~~~-~t~-nP~Wne~f~f~v~~~-~~~L~i~V~d~d 557 (835)
.|+|+|++|++|+..+ ..+.+||||++++ +...++|+++ ++. ||.|||+|.|.+..+ ...|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6999999999998777 4788999999999 2457899998 665 999999999998765 467999999998
Q ss_pred cCCCceEEEEEEeccccccCCeeeeEEecccC-----CCceEEEEEEE
Q 003259 558 IFGDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEA 600 (835)
Q Consensus 558 ~~~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~I~l~l~~ 600 (835)
..++++||++.++++++..+ ..|++|.+. ..|.|.+.+..
T Consensus 83 ~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 77889999999999998654 367788542 24667666643
No 199
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.22 E-value=8.7e-11 Score=104.23 Aligned_cols=97 Identities=39% Similarity=0.703 Sum_probs=87.5
Q ss_pred EEEEEEEeecCCcCCcCCCCCCEEEEEECC-eEeeeeeecCCCCCeeeeEEEeecC---CCcEEEEEEECCCCCCCCeEE
Q 003259 621 IELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG 696 (835)
Q Consensus 621 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~v~---~~~L~i~V~d~d~~~~d~~iG 696 (835)
|.|.|++|++|......+..||||++.+.+ ...+|++..++.||.|||.|.|++. ...|.++|||++..+.+.+||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 468999999998877778899999999988 8899999999999999999999986 478999999999988889999
Q ss_pred EEEEEccccC-CCCceeeEEec
Q 003259 697 DCVVEYQRLP-PNQMADKWIPL 717 (835)
Q Consensus 697 ~~~i~l~~l~-~~~~~~~w~~L 717 (835)
++.+++..+. .......|++|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCCcCcceecC
Confidence 9999999997 66677888875
No 200
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.20 E-value=7.2e-11 Score=108.19 Aligned_cols=86 Identities=20% Similarity=0.354 Sum_probs=70.0
Q ss_pred EEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCcCeEEEEEecc-------eeeeeccCCCCCCcccceeEEEEE
Q 003259 300 RVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-------LTRRTDARPGSDPRWDSMFNMVLH 372 (835)
Q Consensus 300 ~V~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~~~~dpyv~v~~g~-------~~~t~~i~~~~nP~W~etf~~~v~ 372 (835)
-.++|++|+..+..|++ ||||+|++.. ..+|++++++.||+|| +|.|.+.
T Consensus 5 ~~i~a~~L~~~d~~~~~----------------------DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~ 61 (110)
T cd04047 5 LQFSGKKLDKKDFFGKS----------------------DPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQ 61 (110)
T ss_pred EEEEeCCCCCCCCCCCC----------------------CeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHH
Confidence 34589999988876644 9999998842 3678889999999999 7887754
Q ss_pred cC-----CceEEEEEEEeCCCCCCcceeEEEEEecccccCCC
Q 003259 373 EE-----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDS 409 (835)
Q Consensus 373 ~~-----~~~L~~~v~d~~~~~~kdd~LG~~~i~L~~L~~~~ 409 (835)
+. .+.|.|+|||++. ..+|++||++.+++++|....
T Consensus 62 ~l~~~~~~~~l~~~V~d~d~-~~~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 62 KLCNGDYDRPIKIEVYDYDS-SGKHDLIGEFETTLDELLKSS 102 (110)
T ss_pred HhcCCCcCCEEEEEEEEeCC-CCCCcEEEEEEEEHHHHhcCC
Confidence 32 5799999999997 678999999999999988543
No 201
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=5.2e-11 Score=130.63 Aligned_cols=110 Identities=37% Similarity=0.642 Sum_probs=96.7
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCccceEEEEEeeCCceeEEEEEEEeccC-------
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF------- 559 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~------- 559 (835)
..+.++|+.|.+|..+|..|.+||||...+|+.+.+|+++ ..+||+|||.|.|.+.+..+.|++.|||.|..
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrq 374 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQ 374 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHH
Confidence 3799999999999999999999999999999999999999 99999999999999999999999999998742
Q ss_pred -----CCceEEEEEEeccccccCCeeeeEEecccCC-----CceEEEEEE
Q 003259 560 -----GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIE 599 (835)
Q Consensus 560 -----~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~ 599 (835)
+|+++|+..+.+..+. .+.+.||+|+... +|-|++.+.
T Consensus 375 kl~resddflgqtvievrtls--gemdvwynlekrtdksavsgairlhis 422 (1283)
T KOG1011|consen 375 KLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHIS 422 (1283)
T ss_pred HhhhcccccccceeEEEEecc--cchhhhcchhhccchhhccceEEEEEE
Confidence 6899999999887763 3557899998742 687776654
No 202
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.16 E-value=1.2e-10 Score=134.82 Aligned_cols=250 Identities=23% Similarity=0.317 Sum_probs=171.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--eecccc-CCCCCccceEEEEEeeCC-ceeEEEEEEEeccC-CCc
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIV--QRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDE 562 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~--~kT~~~-~t~nP~Wne~f~f~v~~~-~~~L~i~V~d~d~~-~d~ 562 (835)
-.++|.+++|-+|.+.|.+|.+|||+.+.+|+.. -++..+ ++.||+|++.|++....+ ...+.+.|||+|.. +|+
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~ 692 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDE 692 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccc
Confidence 3678999999999999999999999999999876 566677 999999999999987776 77899999999998 799
Q ss_pred eEEEEEEeccccccC-----Cee---------eeEEecccC--------C---------CceEEEEEEEeecCCCC----
Q 003259 563 NMGSARVNLEGLVEG-----SVR---------DIWVPLEKV--------N---------TGELRLQIEATRVDDNE---- 607 (835)
Q Consensus 563 ~IG~~~i~L~~l~~~-----~~~---------~~w~~L~~~--------~---------~G~I~l~l~~~~~~~~~---- 607 (835)
.||+..++|+.-... ... ..|..-... . .++. ..+.|...++..
T Consensus 693 ~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~~d~~~ 771 (1105)
T KOG1326|consen 693 KIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDIYDEKE 771 (1105)
T ss_pred hhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhhhcccc
Confidence 999999998773211 011 222211000 0 0111 222332210000
Q ss_pred ---------------------------------------------------------------CCCCCCCCCcceEEEEE
Q 003259 608 ---------------------------------------------------------------GSRGQNIGSGNGWIELV 624 (835)
Q Consensus 608 ---------------------------------------------------------------~~~~~~~~~~~g~L~v~ 624 (835)
........+...-++|-
T Consensus 772 ~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~lrvi 851 (1105)
T KOG1326|consen 772 AKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYELRVI 851 (1105)
T ss_pred cCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhheeEEEE
Confidence 00011233456778888
Q ss_pred EEEeecCCcCCcC----CCCCCEEEEEECC---eEeeeeeecCCC--CCeeeeEEEeec---------------------
Q 003259 625 IVEARDLVAADLR----GTSDPYVKVQYGD---LKKRTKVIFKTL--NPQWHQTLEFPD--------------------- 674 (835)
Q Consensus 625 v~~a~~L~~~d~~----g~~DPyv~v~~~~---~~~kT~v~~~t~--nP~wne~f~f~v--------------------- 674 (835)
+-.-.+....|.+ ..+|-||+=.+-+ .+++|.+++.++ .-.||=.|.|+.
T Consensus 852 iWnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~ws~d 931 (1105)
T KOG1326|consen 852 IWNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSWSLD 931 (1105)
T ss_pred EeeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhccccc
Confidence 8777776655543 2579999988843 578999998854 345555555542
Q ss_pred -----CCCcEEEEEEECCCCCCCCeEEEEEEEccccCC----------------------CCceeeEEecCC---CC---
Q 003259 675 -----DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPP----------------------NQMADKWIPLQG---VR--- 721 (835)
Q Consensus 675 -----~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~----------------------~~~~~~w~~L~~---~~--- 721 (835)
....|.|+|||.|.+++|++||..+++|++... .+....|+|+.. ..
T Consensus 932 ete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a~~~~~~~l 1011 (1105)
T KOG1326|consen 932 ETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQAEEGDAKVL 1011 (1105)
T ss_pred cccccCchheEEEecccCccChhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeeecCCCccee
Confidence 135799999999999999999999999986532 234567999852 11
Q ss_pred CcEEEEEEEEEecCCccc
Q 003259 722 KGEIHVLITRKVPELDKR 739 (835)
Q Consensus 722 ~G~i~l~l~~~~p~~~~~ 739 (835)
.|.+..++++ +.+.+..
T Consensus 1012 ~Gkvem~lei-lt~~EA~ 1028 (1105)
T KOG1326|consen 1012 AGKVEMSLEI-LTEKEAD 1028 (1105)
T ss_pred cceeeeehhh-hhhhhhh
Confidence 4989988887 5443333
No 203
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=3.9e-11 Score=123.78 Aligned_cols=208 Identities=18% Similarity=0.295 Sum_probs=148.1
Q ss_pred cEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCcCeEEEEEecc------eeeeeccCCCCCCcccce--
Q 003259 295 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE------LTRRTDARPGSDPRWDSM-- 366 (835)
Q Consensus 295 GvL~V~V~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~~~~dpyv~v~~g~------~~~t~~i~~~~nP~W~et-- 366 (835)
-.+..++..|++|+..+..|. .|||++..+.+ ..+|.+..++.||.|+|+
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~----------------------~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev 150 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGL----------------------ADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEV 150 (362)
T ss_pred hhcceeechhcccchhhhhhh----------------------cchHHhhhcccchhhhhhhhHHhhccCcCcceeccce
Confidence 578899999999999987663 38899998852 245667789999999985
Q ss_pred eEEEEEcC--CceEEEEEEEeCCCCCCcceeEEEEEecccccCCCcceeeeCCCCccccccccccCceeeeEeecCCC--
Q 003259 367 FNMVLHEE--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGV-- 442 (835)
Q Consensus 367 f~~~v~~~--~~~L~~~v~d~~~~~~kdd~LG~~~i~L~~L~~~~~~~w~v~~~~~~~~~~~~~~g~~~~~~~~~~~~-- 442 (835)
+.++..+. ...+++.|+|.+. ....+.+|+..+.++.|..... +.+..|= +.+ +|.+..
T Consensus 151 ~~~i~~~~~~~K~~Rk~vcdn~~-~~~~~sqGq~r~~lkKl~p~q~-------------k~f~~cl-~~~--lp~~rad~ 213 (362)
T KOG1013|consen 151 YEGITDDDTHLKVLRKVVCDNDK-KTHNESQGQSRVSLKKLKPLQR-------------KSFNICL-EKS--LPSERADR 213 (362)
T ss_pred ecccccchhhhhhhheeeccCcc-cccccCcccchhhhhccChhhc-------------chhhhhh-hcc--CCcccccc
Confidence 45566554 3588999998886 6778899999999888765321 1111110 000 000000
Q ss_pred ----CcceEEEEEEEeecccCCCCcccCccccCCCccccCCCCccCCCCcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC
Q 003259 443 ----NSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG 518 (835)
Q Consensus 443 ----~~G~l~~~l~l~~~~~~d~~~~~~~~~~~~~~~~~~~p~~~~~~g~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg 518 (835)
.+|++..++ .+.+... .+.|++.+|..|...|.+|.+||||..++.
T Consensus 214 ~~~E~rg~i~isl-----------------------------~~~s~~~-~l~vt~iRc~~l~ssDsng~sDpyvS~~l~ 263 (362)
T KOG1013|consen 214 DEDEERGAILISL-----------------------------AYSSTTP-GLIVTIIRCSHLASSDSNGYSDPYVSQRLS 263 (362)
T ss_pred cchhhccceeeee-----------------------------ccCcCCC-ceEEEEEEeeeeeccccCCCCCccceeecC
Confidence 122222111 1222233 599999999999999999999999999982
Q ss_pred -----CeEeecccc-CCCCCccceEEEEEeeCC---ceeEEEEEEEeccC-CCceEEEEEEec
Q 003259 519 -----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-GDENMGSARVNL 571 (835)
Q Consensus 519 -----~~~~kT~~~-~t~nP~Wne~f~f~v~~~---~~~L~i~V~d~d~~-~d~~IG~~~i~L 571 (835)
.-+++|.+. .+.+|.|++.|.|.+... ...+.|.|||++.. ..+.+|-+...+
T Consensus 264 pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 264 PDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG 326 (362)
T ss_pred CCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccc
Confidence 246788888 999999999999986553 66899999999988 788888765543
No 204
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.12 E-value=5.4e-10 Score=99.42 Aligned_cols=92 Identities=35% Similarity=0.525 Sum_probs=81.1
Q ss_pred EEEEEEEeecCCcCCcCCCCCCEEEEEECCe---EeeeeeecCCCCCeeeeEEEeecC---CCcEEEEEEECCCCCCCCe
Q 003259 621 IELVIVEARDLVAADLRGTSDPYVKVQYGDL---KKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSS 694 (835)
Q Consensus 621 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~---~~kT~v~~~t~nP~wne~f~f~v~---~~~L~i~V~d~d~~~~d~~ 694 (835)
+.+.|++|++|......+..+|||++.+... ..+|+++.++.||.|||.|.|++. ...|.|+|||++..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 6789999999988877678999999999764 899999999999999999999974 5789999999998888999
Q ss_pred EEEEEEEccccCCCCcee
Q 003259 695 IGDCVVEYQRLPPNQMAD 712 (835)
Q Consensus 695 iG~~~i~l~~l~~~~~~~ 712 (835)
+|.+.+++.++..+....
T Consensus 82 ~G~~~~~l~~~~~~~~~~ 99 (101)
T smart00239 82 IGQVTIPLSDLLLGGRHE 99 (101)
T ss_pred eEEEEEEHHHcccCcccc
Confidence 999999999887665443
No 205
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.10 E-value=3.3e-10 Score=97.98 Aligned_cols=79 Identities=29% Similarity=0.562 Sum_probs=70.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEeecccc-CCCCCccceEEEEEeeC-CceeEEEEEEEeccC-CCce
Q 003259 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK---IVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDEN 563 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~---~~~kT~~~-~t~nP~Wne~f~f~v~~-~~~~L~i~V~d~d~~-~d~~ 563 (835)
|+|+|++|++|+..+..+.+||||++++++ ..++|+++ ++.+|.|+|+|.|.+.. ....|.|+|||++.. ++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999888888999999999955 67999999 99999999999999654 355699999999988 6999
Q ss_pred EEEEE
Q 003259 564 MGSAR 568 (835)
Q Consensus 564 IG~~~ 568 (835)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99874
No 206
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.00 E-value=2.5e-09 Score=94.79 Aligned_cols=97 Identities=34% Similarity=0.703 Sum_probs=84.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeecccc-CCCCCccceEEEEEeeC-CceeEEEEEEEeccC-CCceEE
Q 003259 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDENMG 565 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~-~~~kT~~~-~t~nP~Wne~f~f~v~~-~~~~L~i~V~d~d~~-~d~~IG 565 (835)
|.|.|++|++|......+..+|||.+.+.+ ..++|+++ ++.||.|++.|.|.+.. ....+.++||+++.. .+.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 478999999998766677899999999976 88999999 99999999999999877 577899999999877 689999
Q ss_pred EEEEeccccc-cCCeeeeEEec
Q 003259 566 SARVNLEGLV-EGSVRDIWVPL 586 (835)
Q Consensus 566 ~~~i~L~~l~-~~~~~~~w~~L 586 (835)
.+.+++.++. .......|++|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCCcCcceecC
Confidence 9999999998 55566778764
No 207
>PLN02270 phospholipase D alpha
Probab=99.00 E-value=3.4e-09 Score=123.81 Aligned_cols=116 Identities=22% Similarity=0.373 Sum_probs=98.0
Q ss_pred ceEEEEEEEEeecCCcCC------------------cCCCCCCEEEEEECCe-EeeeeeecC-CCCCeeeeEEEeecC--
Q 003259 618 NGWIELVIVEARDLVAAD------------------LRGTSDPYVKVQYGDL-KKRTKVIFK-TLNPQWHQTLEFPDD-- 675 (835)
Q Consensus 618 ~g~L~v~v~~a~~L~~~d------------------~~g~~DPyv~v~~~~~-~~kT~v~~~-t~nP~wne~f~f~v~-- 675 (835)
-|.|.++|++|++|++.+ ..+.+||||.|.+++. ..||+++.+ ..||+|||+|.+++.
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 489999999999998631 1357899999999885 669999988 469999999999985
Q ss_pred CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEecCCC------CCcEEEEEEEEEecC
Q 003259 676 GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV------RKGEIHVLITRKVPE 735 (835)
Q Consensus 676 ~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~l~~~~p~ 735 (835)
...++|.|.|.|.++. .+||.+.||..++..+...+.|+++-+. ..-.|+++++| .|.
T Consensus 87 ~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f-~~~ 150 (808)
T PLN02270 87 ASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQY-FEV 150 (808)
T ss_pred cceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEE-EEc
Confidence 6889999999998885 5999999999999999999999999532 12489999999 443
No 208
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.97 E-value=2.6e-10 Score=127.09 Aligned_cols=102 Identities=27% Similarity=0.447 Sum_probs=92.6
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECCe-------EeeeeeecCCCC
Q 003259 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-------KKRTKVIFKTLN 663 (835)
Q Consensus 591 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~v~~~t~n 663 (835)
.|.+.+++.|. .....|.|.|+.|+++.+.|.+|.+||||.|.++.. ..+|+|+++|+|
T Consensus 933 fg~lsvr~~y~--------------~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLn 998 (1103)
T KOG1328|consen 933 FGVLSVRAYYN--------------GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLN 998 (1103)
T ss_pred CCceEEEEEee--------------ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhcccc
Confidence 48888888887 667889999999999999999999999999999763 469999999999
Q ss_pred CeeeeEEEeecC-------CCcEEEEEEECCCCCCCCeEEEEEEEccccC
Q 003259 664 PQWHQTLEFPDD-------GSPLTLHVRDHNALLASSSIGDCVVEYQRLP 706 (835)
Q Consensus 664 P~wne~f~f~v~-------~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~ 706 (835)
|+|+|+|+|.|+ ...|.++|||||-++.++|-|++.+.|.++.
T Consensus 999 PVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 999 PVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred chhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 999999999985 4679999999999999999999999998875
No 209
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.93 E-value=6.7e-09 Score=92.32 Aligned_cols=90 Identities=30% Similarity=0.563 Sum_probs=78.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEeecccc-CCCCCccceEEEEEeeCC-ceeEEEEEEEeccC-CCce
Q 003259 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK---IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDEN 563 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~---~~~kT~~~-~t~nP~Wne~f~f~v~~~-~~~L~i~V~d~d~~-~d~~ 563 (835)
+.|.|++|++|......+..+|||++++.. ..++|+.+ ++.||.||++|.|.+... ...|.|+|||++.. .+..
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 789999999998776557899999999965 48999999 888999999999998776 88999999999877 6899
Q ss_pred EEEEEEeccccccCCe
Q 003259 564 MGSARVNLEGLVEGSV 579 (835)
Q Consensus 564 IG~~~i~L~~l~~~~~ 579 (835)
+|.+.+++.++..+..
T Consensus 82 ~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 82 IGQVTIPLSDLLLGGR 97 (101)
T ss_pred eEEEEEEHHHcccCcc
Confidence 9999999999876553
No 210
>PLN02270 phospholipase D alpha
Probab=98.89 E-value=1.1e-08 Score=119.43 Aligned_cols=118 Identities=19% Similarity=0.353 Sum_probs=101.9
Q ss_pred cEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECC-eEeecccc-C-CCCCccceEEEEEeeCCc
Q 003259 488 RKINVTVVEGKDLMPKD------------------KSGKCDPYVKLQYGK-IVQRTRTA-H-SPNHVWNQKFELDEIGGG 546 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~------------------~~g~~dpyv~v~lg~-~~~kT~~~-~-t~nP~Wne~f~f~v~~~~ 546 (835)
|.|.++|.+|++|+..+ ..+.+||||.|.+++ .+.||+++ + ..||.|+|.|.+.+....
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~ 87 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMA 87 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCc
Confidence 58999999999997531 135789999999954 78899999 6 469999999999998888
Q ss_pred eeEEEEEEEeccCCCceEEEEEEeccccccCCeeeeEEecccCC------CceEEEEEEEeecCC
Q 003259 547 ECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVN------TGELRLQIEATRVDD 605 (835)
Q Consensus 547 ~~L~i~V~d~d~~~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~~------~G~I~l~l~~~~~~~ 605 (835)
..+.|.|.|.+.++..+||.+.++..++..+...+.|+++.+.. ..+|+++++|.++..
T Consensus 88 ~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 88 SNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred ceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 99999999999888889999999999999999899999996532 348999999998754
No 211
>PLN02223 phosphoinositide phospholipase C
Probab=98.86 E-value=2e-08 Score=113.08 Aligned_cols=100 Identities=17% Similarity=0.237 Sum_probs=81.1
Q ss_pred cceEEEEEEEEeecCCc-----CCcCCCCCCEEEEEECC-----eEeeeeeecCCCCCeeeeEEEeecCC---CcEEEEE
Q 003259 617 GNGWIELVIVEARDLVA-----ADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDDG---SPLTLHV 683 (835)
Q Consensus 617 ~~g~L~v~v~~a~~L~~-----~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~---~~L~i~V 683 (835)
....|.|+|+.|++++. .+.....||||+|.+.+ .+++|.+..++.||+|||+|.|++.. ..|.|+|
T Consensus 407 ~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V 486 (537)
T PLN02223 407 VVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEV 486 (537)
T ss_pred cceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEE
Confidence 35789999999998741 12334679999999944 35688888889999999999999753 4579999
Q ss_pred EECCCCCCCCeEEEEEEEccccCCCCceeeEEecCC
Q 003259 684 RDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG 719 (835)
Q Consensus 684 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~ 719 (835)
+|+|..+.|+++|++.+|+..+..|- ++++|..
T Consensus 487 ~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~ 519 (537)
T PLN02223 487 YDYEVSTADAFCGQTCLPVSELIEGI---RAVPLYD 519 (537)
T ss_pred EecCCCCCCcEEEEEecchHHhcCCc---eeEeccC
Confidence 99999889999999999999998875 5567743
No 212
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.82 E-value=4.3e-08 Score=109.32 Aligned_cols=174 Identities=23% Similarity=0.288 Sum_probs=130.8
Q ss_pred eEeecccc-CCCCCccceEEEEEee-CCceeEEEEEEEeccC-----CCceEEEEEEeccccccCCeeeeEEecc---cC
Q 003259 520 IVQRTRTA-HSPNHVWNQKFELDEI-GGGECLMVKCYNEEIF-----GDENMGSARVNLEGLVEGSVRDIWVPLE---KV 589 (835)
Q Consensus 520 ~~~kT~~~-~t~nP~Wne~f~f~v~-~~~~~L~i~V~d~d~~-----~d~~IG~~~i~L~~l~~~~~~~~w~~L~---~~ 589 (835)
+..+|.++ +..||.|.+.|..... +..+.+++.++|-+.. ..+++|++...+..+........-+.++ ..
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~ 120 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNA 120 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccC
Confidence 45688889 9999999999877643 3578899999986643 6789999999999987655333333333 23
Q ss_pred CCceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEEC--C----eEeeeeeecCCCC
Q 003259 590 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG--D----LKKRTKVIFKTLN 663 (835)
Q Consensus 590 ~~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~--~----~~~kT~v~~~t~n 663 (835)
.+|.|.+.++-. ...........+|++|..+|..+++|||..++-- . ..++|.++++++|
T Consensus 121 ~~g~iti~aee~--------------~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~ 186 (529)
T KOG1327|consen 121 GSGTITISAEED--------------ESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLN 186 (529)
T ss_pred CcccEEEEeecc--------------cccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCC
Confidence 578888888643 1112233344569999999999999999988762 2 3579999999999
Q ss_pred CeeeeEEEee------cCCCcEEEEEEECCCCCCCCeEEEEEEEccccCC
Q 003259 664 PQWHQTLEFP------DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPP 707 (835)
Q Consensus 664 P~wne~f~f~------v~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~ 707 (835)
|.|-+...=. ..+..+.++|||++..+++++||++..++..+..
T Consensus 187 p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 187 PQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CcccccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 9998732211 1367899999999999999999999998887753
No 213
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.81 E-value=1.4e-08 Score=110.77 Aligned_cols=114 Identities=28% Similarity=0.553 Sum_probs=99.0
Q ss_pred eEEEEEEEEeecCCcCCc-CCCCCCEEEEEECCeEeeeeeecCCCCCeee-eEEEeecC-----CCcEEEEEEECCCCCC
Q 003259 619 GWIELVIVEARDLVAADL-RGTSDPYVKVQYGDLKKRTKVIFKTLNPQWH-QTLEFPDD-----GSPLTLHVRDHNALLA 691 (835)
Q Consensus 619 g~L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wn-e~f~f~v~-----~~~L~i~V~d~d~~~~ 691 (835)
|.|-|.|..||+|+.+|. ....|.||.|.+++..+||.|..+++||.|| +-|.|.|+ +..|.|.++|||.++.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 788999999999999885 4567999999999999999999999999999 68888875 6789999999999999
Q ss_pred CCeEEEEEEEccccCC----------CCceeeEEecCC---CCCcEEEEEEEEE
Q 003259 692 SSSIGDCVVEYQRLPP----------NQMADKWIPLQG---VRKGEIHVLITRK 732 (835)
Q Consensus 692 d~~iG~~~i~l~~l~~----------~~~~~~w~~L~~---~~~G~i~l~l~~~ 732 (835)
++-||.+.|+++.+.. +.....|+|+.+ .-+|||.+-+...
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvd 136 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVD 136 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEe
Confidence 9999999999987632 235689999964 3579999888774
No 214
>PLN02952 phosphoinositide phospholipase C
Probab=98.79 E-value=3.9e-08 Score=113.18 Aligned_cols=112 Identities=21% Similarity=0.304 Sum_probs=87.1
Q ss_pred cceEEEEEEEEeecCCcC------CcCCCCCCEEEEEECC-----eEeeeeeecCCCCCeeeeEEEeecCC---CcEEEE
Q 003259 617 GNGWIELVIVEARDLVAA------DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDDG---SPLTLH 682 (835)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~------d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~---~~L~i~ 682 (835)
....|.|.|+.|++++.. +.....||||+|.+-+ .+.+|+++.++.||+|||+|.|++.. ..+.|+
T Consensus 468 ~~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~ 547 (599)
T PLN02952 468 VKKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIE 547 (599)
T ss_pred ccceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEE
Confidence 346899999999987531 1223459999999833 57799999999999999999998752 458999
Q ss_pred EEECCCCCCCCeEEEEEEEccccCCCCceeeEEecC---CCCCcEEEEEEEE
Q 003259 683 VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ---GVRKGEIHVLITR 731 (835)
Q Consensus 683 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~---~~~~G~i~l~l~~ 731 (835)
|+|+|..+.++++|++.+|++.+..|. +|++|. |..-+...+-+.|
T Consensus 548 V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~~a~Llv~f 596 (599)
T PLN02952 548 VREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLKNVRLLMRF 596 (599)
T ss_pred EEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCCCEEEEEEE
Confidence 999999899999999999999998876 588985 3333444444433
No 215
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.76 E-value=1e-08 Score=120.15 Aligned_cols=114 Identities=25% Similarity=0.386 Sum_probs=101.2
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECC-----eEeeeeeecCCCCCe
Q 003259 591 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ 665 (835)
Q Consensus 591 ~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~ 665 (835)
.|+|+++++|. .|.|.|.|.-|++|+-...+..+||||+.++.. .+.||+++++|.||.
T Consensus 1512 ggqV~LsIsY~----------------~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PT 1575 (1639)
T KOG0905|consen 1512 GGQVKLSISYN----------------NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPT 1575 (1639)
T ss_pred CceEEEEEEEc----------------CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCc
Confidence 47999999987 489999999999998777778899999999954 367999999999999
Q ss_pred eeeEEEee------cCCCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEecCCC
Q 003259 666 WHQTLEFP------DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV 720 (835)
Q Consensus 666 wne~f~f~------v~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 720 (835)
|||.+.+. .....|.++||..+.+....++|.+.++|.++...++...||+|...
T Consensus 1576 fnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1576 FNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred hhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 99999877 23688999999999999999999999999999888778899999753
No 216
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.73 E-value=2e-09 Score=120.29 Aligned_cols=117 Identities=26% Similarity=0.462 Sum_probs=97.3
Q ss_pred CCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECC--e-----------------------------EeeeeeecCCC
Q 003259 614 IGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD--L-----------------------------KKRTKVIFKTL 662 (835)
Q Consensus 614 ~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~--~-----------------------------~~kT~v~~~t~ 662 (835)
..+|...+.+.+.+|.||.++|.+|.+|||++..+-. . .+.|.|+++|+
T Consensus 109 ~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TL 188 (1103)
T KOG1328|consen 109 NKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTL 188 (1103)
T ss_pred CCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccC
Confidence 4567788889999999999999999999999877611 0 13588999999
Q ss_pred CCeeeeEEEeecC---CCcEEEEEEECCCCC------------------------------------CCCeEEEEEEEcc
Q 003259 663 NPQWHQTLEFPDD---GSPLTLHVRDHNALL------------------------------------ASSSIGDCVVEYQ 703 (835)
Q Consensus 663 nP~wne~f~f~v~---~~~L~i~V~d~d~~~------------------------------------~d~~iG~~~i~l~ 703 (835)
||+|+|.|.|.+. .+.+.+.+||||.-. .|+|+|++.||+.
T Consensus 189 nPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~ 268 (1103)
T KOG1328|consen 189 NPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLA 268 (1103)
T ss_pred CcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchh
Confidence 9999999999974 688999999997521 1899999999999
Q ss_pred ccCCCCceeeEEecCC-----CCCcEEEEEEEE
Q 003259 704 RLPPNQMADKWIPLQG-----VRKGEIHVLITR 731 (835)
Q Consensus 704 ~l~~~~~~~~w~~L~~-----~~~G~i~l~l~~ 731 (835)
+++.. ..++||.|+. +..|.+++.+-+
T Consensus 269 EiP~~-Gld~WFkLepRS~~S~VqG~~~LklwL 300 (1103)
T KOG1328|consen 269 EIPPD-GLDQWFKLEPRSDKSKVQGQVKLKLWL 300 (1103)
T ss_pred cCCcc-hHHHHhccCcccccccccceEEEEEEE
Confidence 99764 4899999975 346999999876
No 217
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.72 E-value=5.9e-08 Score=90.91 Aligned_cols=89 Identities=22% Similarity=0.262 Sum_probs=74.4
Q ss_pred EEEEEEEeecCCCC--CCCC--CCCcEEEEEEC---CeEeecccc-CCCC--CccceEEEEEeeC---------------
Q 003259 490 INVTVVEGKDLMPK--DKSG--KCDPYVKLQYG---KIVQRTRTA-HSPN--HVWNQKFELDEIG--------------- 544 (835)
Q Consensus 490 L~V~V~~a~~L~~~--~~~g--~~dpyv~v~lg---~~~~kT~~~-~t~n--P~Wne~f~f~v~~--------------- 544 (835)
|+|.|.+|++++.. +..| .+||||++.+. ...++|.+. ++.| |.||+.|.|.+.-
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 89999999996543 3356 49999999993 468999999 9999 9999999988544
Q ss_pred ---------CceeEEEEEEEeccC-CCceEEEEEEeccccccCC
Q 003259 545 ---------GGECLMVKCYNEEIF-GDENMGSARVNLEGLVEGS 578 (835)
Q Consensus 545 ---------~~~~L~i~V~d~d~~-~d~~IG~~~i~L~~l~~~~ 578 (835)
....|.++|||.|.+ +|++||++.++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 145899999999998 8999999999999887654
No 218
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.71 E-value=8.6e-08 Score=110.13 Aligned_cols=99 Identities=17% Similarity=0.294 Sum_probs=80.3
Q ss_pred cceEEEEEEEEeecCCcC------CcCCCCCCEEEEEECC-----eEeeeeeecCCCCCeeeeEEEeecC--C-CcEEEE
Q 003259 617 GNGWIELVIVEARDLVAA------DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD--G-SPLTLH 682 (835)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~------d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~--~-~~L~i~ 682 (835)
....|.|+|+.|.+++.. +.....||||+|.+-+ .+.+|++..++.||+|||+|.|++. + ..|.|+
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~ 546 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVE 546 (598)
T ss_pred cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEE
Confidence 356799999999986421 2234579999999932 4579999999999999999999975 2 568999
Q ss_pred EEECCCCCCCCeEEEEEEEccccCCCCceeeEEecC
Q 003259 683 VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 718 (835)
Q Consensus 683 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 718 (835)
|+|+|..++|+++|+..+|+..|..|-. .++|.
T Consensus 547 V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~ 579 (598)
T PLN02230 547 VHEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLF 579 (598)
T ss_pred EEECCCCCCCCEEEEEEcchHHhhCccc---eEecc
Confidence 9999998899999999999999988753 45664
No 219
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=98.70 E-value=3.6e-08 Score=86.70 Aligned_cols=79 Identities=14% Similarity=0.256 Sum_probs=67.8
Q ss_pred HHHHHH-HCCCCchHHHHHHHHHHHHHHHhh-cCCcccccEEEEEEecCCCCCccceeEEEeCCCCCeEEEEEEEEeeCC
Q 003259 106 NKLLME-VWPGYINPKLSIRFSQIVEKRLKH-RKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDAN 183 (835)
Q Consensus 106 N~~l~~-~W~~~~~~~~~~~i~~~v~~~l~~-~~P~~i~~i~~~~f~LG~~pp~i~~ir~~~~~~~d~~~~d~~~~~~~~ 183 (835)
|.+++| ||-.+-++.+.+.+++.++..|+. .+|+||++|.+++++||+.||.|.++|+.+.+.+++..+|+++.|.|+
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~ 80 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG 80 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence 566666 355444689999999999999998 679999999999999999999999999976566667999999999996
Q ss_pred c
Q 003259 184 D 184 (835)
Q Consensus 184 ~ 184 (835)
.
T Consensus 81 ~ 81 (91)
T PF10296_consen 81 F 81 (91)
T ss_pred e
Confidence 4
No 220
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.65 E-value=2e-07 Score=106.96 Aligned_cols=99 Identities=20% Similarity=0.257 Sum_probs=79.9
Q ss_pred cceEEEEEEEEeecCC----c--CCcCCCCCCEEEEEECC-----eEeeeeeecCCCCCeeeeEEEeecC--C-CcEEEE
Q 003259 617 GNGWIELVIVEARDLV----A--ADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD--G-SPLTLH 682 (835)
Q Consensus 617 ~~g~L~v~v~~a~~L~----~--~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~--~-~~L~i~ 682 (835)
....|+|+|+.|.+++ . .+.....||||+|.+-+ .+.+|+++.++.||+|||+|.|++. + ..|.|.
T Consensus 450 ~~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~ 529 (581)
T PLN02222 450 VKTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLE 529 (581)
T ss_pred ccceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEE
Confidence 3467999999998743 1 12234679999999942 4679999999999999999999864 2 568999
Q ss_pred EEECCCCCCCCeEEEEEEEccccCCCCceeeEEecC
Q 003259 683 VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 718 (835)
Q Consensus 683 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 718 (835)
|+|+|..+.+++||+..+|+..+..|-. .++|.
T Consensus 530 V~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~ 562 (581)
T PLN02222 530 VHEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLH 562 (581)
T ss_pred EEECCCCCCCcEEEEEEcchhhhhCccc---eEEcc
Confidence 9999988889999999999999987753 45664
No 221
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.63 E-value=1.1e-07 Score=83.72 Aligned_cols=82 Identities=21% Similarity=0.379 Sum_probs=69.8
Q ss_pred EEEEEEEeecCCcCC---cCCCCCCEEEEEECCe-EeeeeeecCCCCCeeeeEEEeecC-CCcEEEEEEECCCCCCCCeE
Q 003259 621 IELVIVEARDLVAAD---LRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLASSSI 695 (835)
Q Consensus 621 L~v~v~~a~~L~~~d---~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~-~~~L~i~V~d~d~~~~d~~i 695 (835)
|.|+|..|+|+...+ ..+.+||||.+.+++. +.||++. .||.|||+|.|++. ...+.+.|||... ...--|
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~Vdk~nEiel~VyDk~~-~~~~Pi 76 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPVEKNNEEEVIVYDKGG-DQPVPV 76 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEecCCcEEEEEEEeCCC-Ceecce
Confidence 578999999998777 6788999999999886 8899885 79999999999997 6789999999864 344578
Q ss_pred EEEEEEccccC
Q 003259 696 GDCVVEYQRLP 706 (835)
Q Consensus 696 G~~~i~l~~l~ 706 (835)
|-..+.++++.
T Consensus 77 ~llW~~~sdi~ 87 (109)
T cd08689 77 GLLWLRLSDIA 87 (109)
T ss_pred eeehhhHHHHH
Confidence 98888888774
No 222
>PLN02223 phosphoinositide phospholipase C
Probab=98.63 E-value=2.9e-07 Score=103.81 Aligned_cols=110 Identities=18% Similarity=0.276 Sum_probs=84.9
Q ss_pred cEEEEEEEEeecCCCC-----CCCCCCCcEEEEEEC-----CeEeecccc-CCCCCccceEEEEEeeCC-ceeEEEEEEE
Q 003259 488 RKINVTVVEGKDLMPK-----DKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYN 555 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~-----~~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~Wne~f~f~v~~~-~~~L~i~V~d 555 (835)
..|.|+|..|.+++.. +....+||||+|.+. ...++|.+. ++.||.|||+|+|.+..+ -..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 3799999999987411 223468999999993 245678777 999999999999998777 4578999999
Q ss_pred eccC-CCceEEEEEEeccccccCCeeeeEEecccCC-----CceEEEEEEE
Q 003259 556 EEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEA 600 (835)
Q Consensus 556 ~d~~-~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~~ 600 (835)
+|.. +++++|++.+++..+..|- +.++|.+.. ...|.+++.|
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence 9987 8999999999999998776 556775432 2455555544
No 223
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.59 E-value=1.7e-07 Score=82.37 Aligned_cols=84 Identities=21% Similarity=0.324 Sum_probs=71.3
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-EeeccccCCCCCccceEEEEEeeCCceeEEEEEEEeccCCCceEE
Q 003259 490 INVTVVEGKDLMPKD---KSGKCDPYVKLQYGKI-VQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMG 565 (835)
Q Consensus 490 L~V~V~~a~~L~~~~---~~g~~dpyv~v~lg~~-~~kT~~~~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~~d~~IG 565 (835)
|.|+|+.|+|+...+ ..+.++|||.+++++. +.||++ +.||.|||+|.|.+ +....+.+.|||+.....-.||
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~--srnd~WnE~F~i~V-dk~nEiel~VyDk~~~~~~Pi~ 77 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP--SRNDRWNEDFEIPV-EKNNEEEVIVYDKGGDQPVPVG 77 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC--CCCCcccceEEEEe-cCCcEEEEEEEeCCCCeeccee
Confidence 579999999997666 5788999999999764 788877 48999999999998 5688899999998765566889
Q ss_pred EEEEecccccc
Q 003259 566 SARVNLEGLVE 576 (835)
Q Consensus 566 ~~~i~L~~l~~ 576 (835)
-.-+.++++.+
T Consensus 78 llW~~~sdi~E 88 (109)
T cd08689 78 LLWLRLSDIAE 88 (109)
T ss_pred eehhhHHHHHH
Confidence 99999988764
No 224
>PLN02228 Phosphoinositide phospholipase C
Probab=98.58 E-value=3.8e-07 Score=104.45 Aligned_cols=111 Identities=16% Similarity=0.189 Sum_probs=86.9
Q ss_pred ceEEEEEEEEeecCCc---C---CcCCCCCCEEEEEECC-----eEeeeeeecCCCCCee-eeEEEeecCC---CcEEEE
Q 003259 618 NGWIELVIVEARDLVA---A---DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW-HQTLEFPDDG---SPLTLH 682 (835)
Q Consensus 618 ~g~L~v~v~~a~~L~~---~---d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w-ne~f~f~v~~---~~L~i~ 682 (835)
...|+|+|+.|++|+. . +.....||||+|.+-+ .+++|+++.++.||+| ||+|.|++.. ..|.|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 4579999999998731 1 1233479999999832 4679999999999999 9999999752 568999
Q ss_pred EEECCCCCCCCeEEEEEEEccccCCCCceeeEEecC---CCC--CcEEEEEEEE
Q 003259 683 VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ---GVR--KGEIHVLITR 731 (835)
Q Consensus 683 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~---~~~--~G~i~l~l~~ 731 (835)
|+|+|..+.|+++|+..+|++.|..|-. .++|. |.. ...|.+.+.+
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~G~~l~~atLfv~~~~ 560 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRAGKAYKNTRLLVSFAL 560 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCCCCCCCCeEEEEEEEE
Confidence 9999988899999999999999987753 45664 322 3567777776
No 225
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.57 E-value=2e-07 Score=106.92 Aligned_cols=97 Identities=22% Similarity=0.351 Sum_probs=79.1
Q ss_pred EEEEEEEEeecCCcC-C---cCCCCCCEEEEEECC-----eEeeee-eecCCCCCeeeeEEEeecCC---CcEEEEEEEC
Q 003259 620 WIELVIVEARDLVAA-D---LRGTSDPYVKVQYGD-----LKKRTK-VIFKTLNPQWHQTLEFPDDG---SPLTLHVRDH 686 (835)
Q Consensus 620 ~L~v~v~~a~~L~~~-d---~~g~~DPyv~v~~~~-----~~~kT~-v~~~t~nP~wne~f~f~v~~---~~L~i~V~d~ 686 (835)
.|.|.|+.|.++... + .+..+||||.|.+-+ ...+|+ |..++.||.|+|+|+|++.- ..|.|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 899999999966432 2 235689999999844 467999 55569999999999999752 5689999999
Q ss_pred CCCCCCCeEEEEEEEccccCCCCceeeEEecCC
Q 003259 687 NALLASSSIGDCVVEYQRLPPNQMADKWIPLQG 719 (835)
Q Consensus 687 d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~ 719 (835)
|..++|+|+|+.++|++.|..|-.+ ++|.+
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~ 726 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH---VPLLS 726 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee---eeecC
Confidence 9999999999999999999887644 45543
No 226
>PLN02952 phosphoinositide phospholipase C
Probab=98.50 E-value=1.2e-06 Score=100.93 Aligned_cols=98 Identities=20% Similarity=0.257 Sum_probs=80.4
Q ss_pred cEEEEEEEEeecCCCC------CCCCCCCcEEEEEE-C----CeEeecccc-CCCCCccceEEEEEeeCC-ceeEEEEEE
Q 003259 488 RKINVTVVEGKDLMPK------DKSGKCDPYVKLQY-G----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCY 554 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~------~~~g~~dpyv~v~l-g----~~~~kT~~~-~t~nP~Wne~f~f~v~~~-~~~L~i~V~ 554 (835)
..|.|+|+.|.+++.. +....+||||+|.+ | ...++|+++ ++.||.|||+|.|.+..+ -..++|.|+
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 4799999999887421 11234699999999 3 467899999 889999999999998776 457899999
Q ss_pred EeccC-CCceEEEEEEeccccccCCeeeeEEeccc
Q 003259 555 NEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (835)
Q Consensus 555 d~d~~-~d~~IG~~~i~L~~l~~~~~~~~w~~L~~ 588 (835)
|+|.. .++++|++.+++..|..+. +|++|.+
T Consensus 550 D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~ 581 (599)
T PLN02952 550 EYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHD 581 (599)
T ss_pred ecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcC
Confidence 99877 7999999999999998876 5888864
No 227
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.41 E-value=7.9e-07 Score=101.01 Aligned_cols=110 Identities=19% Similarity=0.240 Sum_probs=86.2
Q ss_pred ceEEEEEEEEeecCCcCCcCCCCCCEEEEEECC------eEeeeeeecCCCCCeee-eEEEeecCC---CcEEEEEEECC
Q 003259 618 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFKTLNPQWH-QTLEFPDDG---SPLTLHVRDHN 687 (835)
Q Consensus 618 ~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v~~~t~nP~wn-e~f~f~v~~---~~L~i~V~d~d 687 (835)
.-.|.|.|+.||.|+.. ..|-..|||.|.+-+ ..++|.|..+++||+|| |.|+|.+.+ ..|++.|+|.|
T Consensus 1064 p~~lsv~vigaRHL~k~-gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKL-GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred ceEEEEEEeeccccccC-CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence 46789999999999844 345667999999833 34455666789999999 999999864 46899999999
Q ss_pred CCCCCCeEEEEEEEccccCCCCceeeEEecCCCCC-----cEEEEEEEE
Q 003259 688 ALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRK-----GEIHVLITR 731 (835)
Q Consensus 688 ~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~-----G~i~l~l~~ 731 (835)
.++...|||+++.|+..+..+- +-.+|++..+ ..+++.+++
T Consensus 1143 mfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdlELaSLLv~i~m 1188 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDLELASLLVFIEM 1188 (1267)
T ss_pred ccCCcceeeeeecchhhhhccc---eeeecccCchhhhhhhhheeeeEe
Confidence 9999999999999999887653 4467776554 345555555
No 228
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.39 E-value=2.8e-06 Score=97.84 Aligned_cols=98 Identities=21% Similarity=0.328 Sum_probs=79.5
Q ss_pred cEEEEEEEEeecCCC--C----CCCCCCCcEEEEEE-C----CeEeecccc-CCCCCccceEEEEEeeCC-ceeEEEEEE
Q 003259 488 RKINVTVVEGKDLMP--K----DKSGKCDPYVKLQY-G----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCY 554 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~--~----~~~g~~dpyv~v~l-g----~~~~kT~~~-~t~nP~Wne~f~f~v~~~-~~~L~i~V~ 554 (835)
.+|.|+|..+.+++. . +....+||||+|.+ | ....+|++. ++.||.|||+|+|.+..+ -..|+|.|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 479999999998642 1 22235799999999 3 346789988 999999999999998776 468999999
Q ss_pred EeccC-CCceEEEEEEeccccccCCeeeeEEeccc
Q 003259 555 NEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (835)
Q Consensus 555 d~d~~-~d~~IG~~~i~L~~l~~~~~~~~w~~L~~ 588 (835)
|+|.. +++++|+..+++..|..|- +.++|.+
T Consensus 549 d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~ 580 (598)
T PLN02230 549 EHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFN 580 (598)
T ss_pred ECCCCCCCCEEEEEEcchHHhhCcc---ceEeccC
Confidence 99886 8999999999999998775 3466654
No 229
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.35 E-value=5.1e-06 Score=95.65 Aligned_cols=99 Identities=18% Similarity=0.226 Sum_probs=79.2
Q ss_pred cEEEEEEEEeecCC----C--CCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCccceEEEEEeeCC-ceeEEEEEE
Q 003259 488 RKINVTVVEGKDLM----P--KDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCY 554 (835)
Q Consensus 488 ~~L~V~V~~a~~L~----~--~~~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~Wne~f~f~v~~~-~~~L~i~V~ 554 (835)
..|+|+|..+.++. . .+....+||||+|.+. ...++|+++ ++.||.|||+|+|.+..+ -..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 37999999998742 1 1123467999999992 357899999 889999999999998776 468999999
Q ss_pred EeccC-CCceEEEEEEeccccccCCeeeeEEecccC
Q 003259 555 NEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV 589 (835)
Q Consensus 555 d~d~~-~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~ 589 (835)
|+|.. .++++|+..+++..|..|- +.++|.+.
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~ 564 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHSR 564 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCcc---ceEEccCC
Confidence 99876 7999999999999998775 44666543
No 230
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.31 E-value=2.6e-06 Score=98.04 Aligned_cols=110 Identities=18% Similarity=0.340 Sum_probs=85.9
Q ss_pred EEEEEEEEeecCCCC-C---CCCCCCcEEEEEEC-----CeEeecccc--CCCCCccceEEEEEeeCC-ceeEEEEEEEe
Q 003259 489 KINVTVVEGKDLMPK-D---KSGKCDPYVKLQYG-----KIVQRTRTA--HSPNHVWNQKFELDEIGG-GECLMVKCYNE 556 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~-~---~~g~~dpyv~v~lg-----~~~~kT~~~--~t~nP~Wne~f~f~v~~~-~~~L~i~V~d~ 556 (835)
+|.|.|..+.++... + ....+||||.|.+- ...++|+++ ++-||.|+|+|+|.+..+ -..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 699999999977432 2 22468999999993 347899966 999999999999999887 56789999999
Q ss_pred ccC-CCceEEEEEEeccccccCCeeeeEEecccC-----CCceEEEEEEEe
Q 003259 557 EIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEAT 601 (835)
Q Consensus 557 d~~-~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~I~l~l~~~ 601 (835)
|.. +|+++|+..+|+..|..|-.+ ++|.+. ....|.+++.+.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH---VPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee---eeecCCCCccccceeEEEEEEEe
Confidence 988 799999999999999887644 556542 134555555543
No 231
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.28 E-value=2.6e-06 Score=93.46 Aligned_cols=112 Identities=21% Similarity=0.429 Sum_probs=93.4
Q ss_pred cEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCeEeecccc-CCCCCccce-EEEEEeeC---CceeEEEEEEEeccC-C
Q 003259 488 RKINVTVVEGKDLMPKDK-SGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQ-KFELDEIG---GGECLMVKCYNEEIF-G 560 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~-~g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne-~f~f~v~~---~~~~L~i~V~d~d~~-~ 560 (835)
|.+.|.|..||+|+.+|. +...|.||++++++..++|.+. +++||.||. .|.|.+.+ .++.|.|.+.|+|.. .
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 379999999999998875 4568999999999999999999 999999985 58888765 367899999999998 8
Q ss_pred CceEEEEEEeccccccC----------CeeeeEEecccC---CCceEEEEEE
Q 003259 561 DENMGSARVNLEGLVEG----------SVRDIWVPLEKV---NTGELRLQIE 599 (835)
Q Consensus 561 d~~IG~~~i~L~~l~~~----------~~~~~w~~L~~~---~~G~I~l~l~ 599 (835)
++.||.+.++++.|... .....|+|+.+. -+|+|.+-+.
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk 134 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK 134 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence 99999999999987632 245789998763 2688876553
No 232
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.27 E-value=6.6e-06 Score=92.20 Aligned_cols=180 Identities=22% Similarity=0.314 Sum_probs=123.8
Q ss_pred ceeeeeccCCCCCCcccceeEEEEEcC-CceEEEEEEEeCCC---CCCcceeEEEEEecccccCCCcceeeeCCCCcccc
Q 003259 348 ELTRRTDARPGSDPRWDSMFNMVLHEE-TGTVRFNLYECIPG---HVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIA 423 (835)
Q Consensus 348 ~~~~t~~i~~~~nP~W~etf~~~v~~~-~~~L~~~v~d~~~~---~~kdd~LG~~~i~L~~L~~~~~~~w~v~~~~~~~~ 423 (835)
+..||..+++.+||.|.++|.+..+-. .|.|++.+||.+.. ....|++|+++..++.+.......
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~----------- 109 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLT----------- 109 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhh-----------
Confidence 456888899999999999998886554 79999999998863 124579999999998887543210
Q ss_pred ccccccCceeeeEeecCCCCcceEEEEEEEeecccCCCCcccCccccCCCccccCCCCccCCCCcEEEEEEEEeecCCCC
Q 003259 424 KHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPK 503 (835)
Q Consensus 424 ~~~~~~g~~~~~~~~~~~~~~G~l~~~l~l~~~~~~d~~~~~~~~~~~~~~~~~~~p~~~~~~g~~L~V~V~~a~~L~~~ 503 (835)
.+... .+-....+|.+.... +. .. . .. ...--..+|++|..+
T Consensus 110 ~~l~~--------~~~~~~~~g~iti~a--ee-----~~---------------------~-~~-~~~~~~~~~~~ld~k 151 (529)
T KOG1327|consen 110 GPLLL--------KPGKNAGSGTITISA--EE-----DE---------------------S-DN-DVVQFSFRAKNLDPK 151 (529)
T ss_pred hhhhc--------ccCccCCcccEEEEe--ec-----cc---------------------c-cC-ceeeeeeeeeecCcc
Confidence 00000 000111234444221 10 00 0 00 123334558999999
Q ss_pred CCCCCCCcEEEEEE--C----CeEeecccc-CCCCCccceEEEEE----eeCCceeEEEEEEEeccC-CCceEEEEEEec
Q 003259 504 DKSGKCDPYVKLQY--G----KIVQRTRTA-HSPNHVWNQKFELD----EIGGGECLMVKCYNEEIF-GDENMGSARVNL 571 (835)
Q Consensus 504 ~~~g~~dpyv~v~l--g----~~~~kT~~~-~t~nP~Wne~f~f~----v~~~~~~L~i~V~d~d~~-~d~~IG~~~i~L 571 (835)
+..+++|||..++- + ...++|.++ ++++|.|.+...-. ..+....+.+.+||++.. ++++||.+..++
T Consensus 152 d~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~ 231 (529)
T KOG1327|consen 152 DFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTL 231 (529)
T ss_pred cccccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccH
Confidence 99999999999876 2 257899999 99999998743211 123467889999999987 779999999999
Q ss_pred ccccc
Q 003259 572 EGLVE 576 (835)
Q Consensus 572 ~~l~~ 576 (835)
.++..
T Consensus 232 ~~~~~ 236 (529)
T KOG1327|consen 232 SELQE 236 (529)
T ss_pred HHhcc
Confidence 99865
No 233
>PLN02228 Phosphoinositide phospholipase C
Probab=98.26 E-value=1e-05 Score=92.96 Aligned_cols=110 Identities=20% Similarity=0.193 Sum_probs=84.8
Q ss_pred EEEEEEEEeecCCC---CC---CCCCCCcEEEEEE-C----CeEeecccc-CCCCCcc-ceEEEEEeeCC-ceeEEEEEE
Q 003259 489 KINVTVVEGKDLMP---KD---KSGKCDPYVKLQY-G----KIVQRTRTA-HSPNHVW-NQKFELDEIGG-GECLMVKCY 554 (835)
Q Consensus 489 ~L~V~V~~a~~L~~---~~---~~g~~dpyv~v~l-g----~~~~kT~~~-~t~nP~W-ne~f~f~v~~~-~~~L~i~V~ 554 (835)
.|+|+|+.|.+|+. .+ .....||||+|.+ | ...++|+++ ++.||.| ||+|+|.+..+ -..|+|.|+
T Consensus 432 ~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~ 511 (567)
T PLN02228 432 TLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQ 511 (567)
T ss_pred eEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEE
Confidence 79999999998731 11 2234899999998 2 356899999 8899999 99999998776 468899999
Q ss_pred EeccC-CCceEEEEEEeccccccCCeeeeEEecccCC-----CceEEEEEEEe
Q 003259 555 NEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEAT 601 (835)
Q Consensus 555 d~d~~-~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~~~ 601 (835)
|+|.. .++++|++.+++..|..|- +.++|.+.. .+.|.+++.+.
T Consensus 512 D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~~ 561 (567)
T PLN02228 512 DYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYKNTRLLVSFALD 561 (567)
T ss_pred eCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCCCeEEEEEEEEc
Confidence 99866 7899999999999998775 456665432 34566666554
No 234
>PLN02352 phospholipase D epsilon
Probab=98.24 E-value=7.8e-06 Score=95.96 Aligned_cols=113 Identities=16% Similarity=0.235 Sum_probs=85.6
Q ss_pred CcceEEEEEEEEeecCCcC----Cc-CCCCCCEEEEEECCe-EeeeeeecCCCCCeeeeEEEeecC--C-CcEEEEEEEC
Q 003259 616 SGNGWIELVIVEARDLVAA----DL-RGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD--G-SPLTLHVRDH 686 (835)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~----d~-~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~--~-~~L~i~V~d~ 686 (835)
.-.|.|.++|.+|+-+... +. ....||||.|.+++. ..|| .+.-||+|||+|.+++. . ..++|.|.|.
T Consensus 7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~ 83 (758)
T PLN02352 7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK 83 (758)
T ss_pred ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecC
Confidence 3458899999999743221 11 122399999999885 5588 55669999999999985 3 5799999982
Q ss_pred CCCCCCCeEEEEEEEccccCCCCc-eeeEEecCCC----CC-cEEEEEEEEEecCCc
Q 003259 687 NALLASSSIGDCVVEYQRLPPNQM-ADKWIPLQGV----RK-GEIHVLITRKVPELD 737 (835)
Q Consensus 687 d~~~~d~~iG~~~i~l~~l~~~~~-~~~w~~L~~~----~~-G~i~l~l~~~~p~~~ 737 (835)
-.+||.+.||..++..+.. .+.|+++-+. .. ..|+++++| .|...
T Consensus 84 -----~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~ 134 (758)
T PLN02352 84 -----CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWF-RPAEL 134 (758)
T ss_pred -----CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEE-EEhhh
Confidence 5699999999999988765 9999999532 13 499999999 55433
No 235
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.17 E-value=1.1e-05 Score=92.11 Aligned_cols=116 Identities=22% Similarity=0.334 Sum_probs=90.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE-C----CeEeecccc--CCCCCccc-eEEEEEeeCC-ceeEEEEEEEeccC
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-G----KIVQRTRTA--HSPNHVWN-QKFELDEIGG-GECLMVKCYNEEIF 559 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~l-g----~~~~kT~~~--~t~nP~Wn-e~f~f~v~~~-~~~L~i~V~d~d~~ 559 (835)
.|.|.|+.||.|+.. ..|...|||+|.+ | ..+++|.++ ++.||+|| |+|+|.+..+ -..|+|.|+|.|.+
T Consensus 1066 ~lsv~vigaRHL~k~-gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1066 TLSVKVLGARHLPKL-GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF 1144 (1267)
T ss_pred EEEEEEeeccccccC-CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc
Confidence 689999999999843 3567789999998 3 345555555 99999999 9999999887 56899999999999
Q ss_pred -CCceEEEEEEeccccccCCeeeeEEecccCC-----CceEEEEEEEeecCCCCC
Q 003259 560 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEATRVDDNEG 608 (835)
Q Consensus 560 -~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~l~~~~~~~~~~ 608 (835)
...+||++..|+..+..+- +-++|.+.- -..+.+.++..++..++.
T Consensus 1145 s~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdlELaSLLv~i~m~~~~~~~~ 1196 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDLELASLLVFIEMRPVLESEE 1196 (1267)
T ss_pred CCcceeeeeecchhhhhccc---eeeecccCchhhhhhhhheeeeEeccccCccc
Confidence 5569999999999987664 346665532 356677777776655443
No 236
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.16 E-value=2.9e-06 Score=76.89 Aligned_cols=97 Identities=21% Similarity=0.389 Sum_probs=75.5
Q ss_pred EEEEEEEeecCCcCC-------------cCCCCCCEEEEEE----CCeEeeeeeecCCCCCeeeeEEEeecC--------
Q 003259 621 IELVIVEARDLVAAD-------------LRGTSDPYVKVQY----GDLKKRTKVIFKTLNPQWHQTLEFPDD-------- 675 (835)
Q Consensus 621 L~v~v~~a~~L~~~d-------------~~g~~DPyv~v~~----~~~~~kT~v~~~t~nP~wne~f~f~v~-------- 675 (835)
|.|.|++|.+|+++- ..-..++||++.+ +++..+|+++.++.+|.||.+++|+++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 467888998886421 1123589999996 346789999999999999999999963
Q ss_pred ----------CCcEEEEEEECCCC----------CCCCeEEEEEEEccccCC-CCceeeEEec
Q 003259 676 ----------GSPLTLHVRDHNAL----------LASSSIGDCVVEYQRLPP-NQMADKWIPL 717 (835)
Q Consensus 676 ----------~~~L~i~V~d~d~~----------~~d~~iG~~~i~l~~l~~-~~~~~~w~~L 717 (835)
...+.++||+.+.- .+|-.||.+.||+.+|.. ......||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 45899999987642 246689999999999854 4568899985
No 237
>PLN02352 phospholipase D epsilon
Probab=98.02 E-value=4e-05 Score=90.13 Aligned_cols=113 Identities=18% Similarity=0.245 Sum_probs=88.4
Q ss_pred cEEEEEEEEeecCCCC----CC-CCCCCcEEEEEECC-eEeeccccCCCCCccceEEEEEeeCCc-eeEEEEEEEeccCC
Q 003259 488 RKINVTVVEGKDLMPK----DK-SGKCDPYVKLQYGK-IVQRTRTAHSPNHVWNQKFELDEIGGG-ECLMVKCYNEEIFG 560 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~----~~-~g~~dpyv~v~lg~-~~~kT~~~~t~nP~Wne~f~f~v~~~~-~~L~i~V~d~d~~~ 560 (835)
|.|.++|.+|+-+... +. ....+|||.|.+++ .+.|| .+..||.|+|.|.+.+.... ..+.|.|.| +
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt--~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----~ 83 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT--SHEYDRVWNQTFQILCAHPLDSTITITLKT----K 83 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC--CCCCCCccccceeEEeeeecCCcEEEEEec----C
Confidence 5899999999844221 11 12239999999965 67788 53349999999999988876 689999988 3
Q ss_pred CceEEEEEEeccccccCCe-eeeEEecccCC----C-ceEEEEEEEeecCCC
Q 003259 561 DENMGSARVNLEGLVEGSV-RDIWVPLEKVN----T-GELRLQIEATRVDDN 606 (835)
Q Consensus 561 d~~IG~~~i~L~~l~~~~~-~~~w~~L~~~~----~-G~I~l~l~~~~~~~~ 606 (835)
..+||.+.++..++..+.. .+.|+++.+.. . .+|+++++|.+++..
T Consensus 84 ~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 84 CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence 6899999999999998865 88999996532 3 499999999997643
No 238
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.98 E-value=9.5e-06 Score=96.00 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=87.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCccceEEEEEeeC----CceeEEEEEEEec
Q 003259 488 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE 557 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~Wne~f~f~v~~----~~~~L~i~V~d~d 557 (835)
++|.|-|.-|++|+-...+..+||||+.|+- ..+.||+++ +|.||.|||...+.... .+..|.+.||..+
T Consensus 1524 ~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~ 1603 (1639)
T KOG0905|consen 1524 GTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNG 1603 (1639)
T ss_pred ceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeeccc
Confidence 4899999999999766667789999999992 247899999 99999999999887332 2578999999998
Q ss_pred cC-CCceEEEEEEeccccccCCeeeeEEecccC
Q 003259 558 IF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV 589 (835)
Q Consensus 558 ~~-~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~ 589 (835)
.. .+.++|.+.++|.++....+...||+|...
T Consensus 1604 ~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1604 GLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred ceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 88 889999999999999887777799999754
No 239
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.70 E-value=0.0043 Score=67.54 Aligned_cols=211 Identities=16% Similarity=0.202 Sum_probs=149.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCccceEEEEEeeC--------CceeEEEEEEEeccC-
Q 003259 490 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG--------GGECLMVKCYNEEIF- 559 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne~f~f~v~~--------~~~~L~i~V~d~d~~- 559 (835)
+.+.|++|++++.. ..-.-.+..+++++...|..+ ++..|.||....+.+.. ....|++++|.-+..
T Consensus 2 ivl~i~egr~F~~~---~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQR---PRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCC---CCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 67899999999765 234567888999999999999 99999999999988542 356899999988733
Q ss_pred -CCceEEEEEEecccc---ccC--CeeeeEEecccC------CCceEEEEEEEeecCCC-----C------CC--CC---
Q 003259 560 -GDENMGSARVNLEGL---VEG--SVRDIWVPLEKV------NTGELRLQIEATRVDDN-----E------GS--RG--- 611 (835)
Q Consensus 560 -~d~~IG~~~i~L~~l---~~~--~~~~~w~~L~~~------~~G~I~l~l~~~~~~~~-----~------~~--~~--- 611 (835)
..+.||.+.++|... ..+ .....||+|-+. .+-+|.+.+....-... . .. .+
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~ 158 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP 158 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence 788999999999998 444 466799999765 24577777755432110 0 00 00
Q ss_pred --------------------------CCCCCcceEEEEEEEEeecCCcC------CcCCCCCCEEEEEECCeEeeeeeec
Q 003259 612 --------------------------QNIGSGNGWIELVIVEARDLVAA------DLRGTSDPYVKVQYGDLKKRTKVIF 659 (835)
Q Consensus 612 --------------------------~~~~~~~g~L~v~v~~a~~L~~~------d~~g~~DPyv~v~~~~~~~kT~v~~ 659 (835)
.......-.|.|++..|.+|... +..+...-|....+-+....|.-..
T Consensus 159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~ 238 (340)
T PF12416_consen 159 PPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFK 238 (340)
T ss_pred ccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeecc
Confidence 01123456788889999998644 1123356677777777677788888
Q ss_pred CCCCCeee-eEEE-eec------------CCCcEEEEEEECCCCCCCCeEEEEEEEccccCCC
Q 003259 660 KTLNPQWH-QTLE-FPD------------DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN 708 (835)
Q Consensus 660 ~t~nP~wn-e~f~-f~v------------~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~ 708 (835)
...+|.|- |.-. +.+ ....|.|.++.. +..||.+.|++..+...
T Consensus 239 ~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g-----~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 239 SLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG-----NQSLGSTSVPLQPLLPK 296 (340)
T ss_pred ccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC-----CcEEEEEEEEhhhccCC
Confidence 88889775 3333 554 246788888764 45899999999988543
No 240
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=3.4e-05 Score=81.86 Aligned_cols=104 Identities=32% Similarity=0.395 Sum_probs=87.5
Q ss_pred CcceEEEEEEEEeecCCcCCc-CCCCCCEEEEEECC-----eEeeeeeecCCCCCeeeeEEEeec--CCCcEEEEEE-EC
Q 003259 616 SGNGWIELVIVEARDLVAADL-RGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPD--DGSPLTLHVR-DH 686 (835)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v--~~~~L~i~V~-d~ 686 (835)
...|.+.|.|++|++|..+-. ...++|||+|++.. .+.+|+...+|++|-+-+...|.- ....|.+.|| |+
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdy 345 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDY 345 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccc
Confidence 457999999999999976542 33789999999933 367999999999999999888875 4778999998 77
Q ss_pred CCCCCCCeEEEEEEEccccCCCC-ceeeEEecCC
Q 003259 687 NALLASSSIGDCVVEYQRLPPNQ-MADKWIPLQG 719 (835)
Q Consensus 687 d~~~~d~~iG~~~i~l~~l~~~~-~~~~w~~L~~ 719 (835)
.+..++.|+|.+.+-+.++.... ....||+|-+
T Consensus 346 gRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 346 GRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred cccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 88888999999999999997765 7889999965
No 241
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.57 E-value=9e-05 Score=67.42 Aligned_cols=97 Identities=20% Similarity=0.316 Sum_probs=73.7
Q ss_pred EEEEEEEeecCCCCC-------------CCCCCCcEEEEEE----CCeEeecccc-CCCCCccceEEEEEeeC-------
Q 003259 490 INVTVVEGKDLMPKD-------------KSGKCDPYVKLQY----GKIVQRTRTA-HSPNHVWNQKFELDEIG------- 544 (835)
Q Consensus 490 L~V~V~~a~~L~~~~-------------~~g~~dpyv~v~l----g~~~~kT~~~-~t~nP~Wne~f~f~v~~------- 544 (835)
|.|.|++|.+|.... ..-..|+||++.+ +++..+|+++ ++..|.|+..++|.+..
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 356777777774321 0113689999986 5788999999 99999999999999651
Q ss_pred ---------CceeEEEEEEEeccC-----------CCceEEEEEEeccccccCC-eeeeEEec
Q 003259 545 ---------GGECLMVKCYNEEIF-----------GDENMGSARVNLEGLVEGS-VRDIWVPL 586 (835)
Q Consensus 545 ---------~~~~L~i~V~d~d~~-----------~d~~IG~~~i~L~~l~~~~-~~~~w~~L 586 (835)
....+.++||+.... +|-.+|.+.+++.+|+... ....||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 134789999997643 4568999999999998655 66789875
No 242
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.46 E-value=0.00012 Score=61.90 Aligned_cols=92 Identities=18% Similarity=0.180 Sum_probs=67.8
Q ss_pred EEEEEEeecCCC-CCCCCCCCcEEEEEE--CC-eEeecccc-CCCCCccceEEEEEeeC---CceeEEEEEEEeccCCCc
Q 003259 491 NVTVVEGKDLMP-KDKSGKCDPYVKLQY--GK-IVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIFGDE 562 (835)
Q Consensus 491 ~V~V~~a~~L~~-~~~~g~~dpyv~v~l--g~-~~~kT~~~-~t~nP~Wne~f~f~v~~---~~~~L~i~V~d~d~~~d~ 562 (835)
.|+++.|+||.- ......+.-|++=-+ .+ ..+||... +..||.|+|+|.|.+.. +...|.|+|+..-. +.+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~-RKe 80 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTP-RKR 80 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCC-ccc
Confidence 589999999943 233344556776433 43 57899999 99999999999999755 46789999988332 789
Q ss_pred eEEEEEEeccccccCCeeeeEE
Q 003259 563 NMGSARVNLEGLVEGSVRDIWV 584 (835)
Q Consensus 563 ~IG~~~i~L~~l~~~~~~~~w~ 584 (835)
.||.|++.++++-.. +..+|.
T Consensus 81 ~iG~~sL~l~s~gee-E~~HW~ 101 (103)
T cd08684 81 TIGECSLSLRTLSTQ-ETDHWL 101 (103)
T ss_pred eeeEEEeecccCCHH-Hhhhhh
Confidence 999999999987433 334564
No 243
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.41 E-value=0.00013 Score=61.53 Aligned_cols=91 Identities=14% Similarity=0.311 Sum_probs=67.9
Q ss_pred EEEEEeecCCcCC-cCCCCCCEEEEEE--CC-eEeeeeeecCCCCCeeeeEEEeecC-----CCcEEEEEEECCCCCCCC
Q 003259 623 LVIVEARDLVAAD-LRGTSDPYVKVQY--GD-LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASS 693 (835)
Q Consensus 623 v~v~~a~~L~~~d-~~g~~DPyv~v~~--~~-~~~kT~v~~~t~nP~wne~f~f~v~-----~~~L~i~V~d~d~~~~d~ 693 (835)
+++.+++||.-.. .+..+.-|++-.+ .. ...||.+.+...||+|+|+|.|.+. .-.|.+.|++ ...+.+
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe 80 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKR 80 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccc
Confidence 6788999986432 2334455666444 33 4679999999999999999999874 6678999988 456788
Q ss_pred eEEEEEEEccccCCCCceeeEEe
Q 003259 694 SIGDCVVEYQRLPPNQMADKWIP 716 (835)
Q Consensus 694 ~iG~~~i~l~~l~~~~~~~~w~~ 716 (835)
.||.|.+.++++-.. ..++|.+
T Consensus 81 ~iG~~sL~l~s~gee-E~~HW~e 102 (103)
T cd08684 81 TIGECSLSLRTLSTQ-ETDHWLE 102 (103)
T ss_pred eeeEEEeecccCCHH-Hhhhhhc
Confidence 999999999987543 3567764
No 244
>PLN02964 phosphatidylserine decarboxylase
Probab=97.32 E-value=0.00032 Score=82.19 Aligned_cols=87 Identities=16% Similarity=0.335 Sum_probs=71.5
Q ss_pred ccEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCcCeEEEEEec-ceeeeeccCCCCCCcccceeEEEEE
Q 003259 294 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDARPGSDPRWDSMFNMVLH 372 (835)
Q Consensus 294 ~GvL~V~V~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~~~~dpyv~v~~g-~~~~t~~i~~~~nP~W~etf~~~v~ 372 (835)
.|+..+++++|+ ++.. ||| |+.+++| +..||.+.++|.||+|||...|+|.
T Consensus 53 ~~~~~~~~~~~~----~~~~------------~~~------------~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~ 104 (644)
T PLN02964 53 SGIALLTLVGAE----MKFK------------DKW------------LACVSFGEQTFRTETSDSTDKPVWNSEKKLLLE 104 (644)
T ss_pred cCeEEEEeehhh----hccC------------CcE------------EEEEEecceeeeeccccccCCcccchhhceEec
Confidence 599999999998 2321 333 6777888 4588999999999999999999998
Q ss_pred cC-CceEEEEEEEeCCCCCCcceeEEEEEecccccCCC
Q 003259 373 EE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDS 409 (835)
Q Consensus 373 ~~-~~~L~~~v~d~~~~~~kdd~LG~~~i~L~~L~~~~ 409 (835)
.. ....+|.|||.+. ..+++++|.|+++|.++....
T Consensus 105 ~~~~~~~~~~~~~~~~-~s~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 105 KNGPHLARISVFETNR-LSKNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred cCCcceEEEEEEecCC-CCHHHhhhheeecHhhccHHH
Confidence 76 3567999999997 788999999999998877654
No 245
>PLN02964 phosphatidylserine decarboxylase
Probab=97.09 E-value=0.00066 Score=79.62 Aligned_cols=87 Identities=20% Similarity=0.293 Sum_probs=72.3
Q ss_pred CcceEEEEEEEEeecCCcCCcCCCCCCEEE-EEECCeEeeeeeecCCCCCeeeeEEEeecC---CCcEEEEEEECCCCCC
Q 003259 616 SGNGWIELVIVEARDLVAADLRGTSDPYVK-VQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLA 691 (835)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~-v~~~~~~~kT~v~~~t~nP~wne~f~f~v~---~~~L~i~V~d~d~~~~ 691 (835)
.-.|...+++++|+ ++ ..|||.. +.+|.+.+||.+.++|+||+||+...|.+. .....+.|||.+++++
T Consensus 51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 123 (644)
T PLN02964 51 DFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSK 123 (644)
T ss_pred cccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCH
Confidence 55689999999987 22 3699876 456889999999999999999998777764 3446999999999999
Q ss_pred CCeEEEEEEEccccCCCC
Q 003259 692 SSSIGDCVVEYQRLPPNQ 709 (835)
Q Consensus 692 d~~iG~~~i~l~~l~~~~ 709 (835)
++++|.|.++|.++...+
T Consensus 124 n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 124 NTLVGYCELDLFDFVTQE 141 (644)
T ss_pred HHhhhheeecHhhccHHH
Confidence 999999999998775543
No 246
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.06 E-value=0.00055 Score=73.42 Aligned_cols=118 Identities=17% Similarity=0.254 Sum_probs=95.4
Q ss_pred cceEEEEEEEEeecCCcCCcCCCCCCEEEEEE---C--CeEeeeeeecCCCCCeeeeEEEeecC--------------CC
Q 003259 617 GNGWIELVIVEARDLVAADLRGTSDPYVKVQY---G--DLKKRTKVIFKTLNPQWHQTLEFPDD--------------GS 677 (835)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~---~--~~~~kT~v~~~t~nP~wne~f~f~v~--------------~~ 677 (835)
....|.+.|.++++++........|.||++.+ . .++.+|.+++.|.+|.|+|.|-+.+. ..
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 34567788888998877655556789999988 2 35789999999999999999999873 35
Q ss_pred cEEEEEEECCCC-CCCCeEEEEEEEccccCCCCceeeEEecC-C--CCCcEEEEEEEEEec
Q 003259 678 PLTLHVRDHNAL-LASSSIGDCVVEYQRLPPNQMADKWIPLQ-G--VRKGEIHVLITRKVP 734 (835)
Q Consensus 678 ~L~i~V~d~d~~-~~d~~iG~~~i~l~~l~~~~~~~~w~~L~-~--~~~G~i~l~l~~~~p 734 (835)
.+.|++|+...| ..|.++|.+.+.|..|...-.....++|. | ..+|.+.+.+.++-|
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR~P 505 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIRQP 505 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEecc
Confidence 799999998865 46889999999999998777778889985 3 346999999988644
No 247
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.59 E-value=0.023 Score=62.01 Aligned_cols=108 Identities=21% Similarity=0.310 Sum_probs=89.7
Q ss_pred EEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeecC----------CCcEEEEEEECC-CC
Q 003259 621 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD----------GSPLTLHVRDHN-AL 689 (835)
Q Consensus 621 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~----------~~~L~i~V~d~d-~~ 689 (835)
+.++|++|++.+... ...-.+...+++....|..+..+-.|.||..+...++ +..|.++||..| .-
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 578999999998762 3456778889999999999999999999999888863 678999999988 55
Q ss_pred CCCCeEEEEEEEcccc---CCC--CceeeEEecCCC------CCcEEEEEEEE
Q 003259 690 LASSSIGDCVVEYQRL---PPN--QMADKWIPLQGV------RKGEIHVLITR 731 (835)
Q Consensus 690 ~~d~~iG~~~i~l~~l---~~~--~~~~~w~~L~~~------~~G~i~l~l~~ 731 (835)
+..+.||.+.++|... ..+ ....+||+|-+. .+-||.+.+.+
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~i 131 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSI 131 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEE
Confidence 7788999999999988 544 567899999653 35788888887
No 248
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.51 E-value=0.002 Score=69.20 Aligned_cols=113 Identities=18% Similarity=0.309 Sum_probs=91.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE---CC--eEeecccc-CCCCCccceEEEEEeeCC------------ceeEE
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY---GK--IVQRTRTA-HSPNHVWNQKFELDEIGG------------GECLM 550 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~l---g~--~~~kT~~~-~t~nP~Wne~f~f~v~~~------------~~~L~ 550 (835)
.|.+.|+++.+++........|.|+++.+ ++ +..+|.++ .+.+|.|+|.|.+.+... ...+.
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 57888899998866544556788999987 33 56677778 999999999999987551 23789
Q ss_pred EEEEEeccC--CCceEEEEEEeccccccCCeeeeEEecccCC---CceEEEEEEEe
Q 003259 551 VKCYNEEIF--GDENMGSARVNLEGLVEGSVRDIWVPLEKVN---TGELRLQIEAT 601 (835)
Q Consensus 551 i~V~d~d~~--~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~~---~G~I~l~l~~~ 601 (835)
|++|++..+ +|.++|.+.+.|.-|.+.......++|.+.. .|.|.+.+...
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 999999888 8999999999999998888888889987642 58888887665
No 249
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.0019 Score=68.95 Aligned_cols=102 Identities=21% Similarity=0.308 Sum_probs=83.4
Q ss_pred cEEEEEEEEeecCCCCCC-CCCCCcEEEEEE--CC---eEeecccc-CCCCCccceEEEEEeeCCceeEEEEEEEec-cC
Q 003259 488 RKINVTVVEGKDLMPKDK-SGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEE-IF 559 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~~-~g~~dpyv~v~l--g~---~~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d-~~ 559 (835)
|.+.|.|++|++|..+.. ...++|||+||+ ++ .+.+|+.. +|.+|.+-+...|....+...|.+.+|-+- ..
T Consensus 269 g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRm 348 (405)
T KOG2060|consen 269 GDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRM 348 (405)
T ss_pred CceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecccccc
Confidence 479999999999965543 337899999999 33 35788888 999999998888886777889999999644 33
Q ss_pred -CCceEEEEEEeccccccCC-eeeeEEecccC
Q 003259 560 -GDENMGSARVNLEGLVEGS-VRDIWVPLEKV 589 (835)
Q Consensus 560 -~d~~IG~~~i~L~~l~~~~-~~~~w~~L~~~ 589 (835)
.+.++|.+.+-+.+|.... ....||+|.+.
T Consensus 349 d~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 349 DHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred chHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 7889999999999998776 67799999764
No 250
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.55 E-value=0.14 Score=49.25 Aligned_cols=119 Identities=11% Similarity=0.233 Sum_probs=85.2
Q ss_pred CcceEEEEEEEEeecCCcCCc--CCCCCCEEEEEE--CCeEeeeeeecCCCCCeeeeEEEeecC----------------
Q 003259 616 SGNGWIELVIVEARDLVAADL--RGTSDPYVKVQY--GDLKKRTKVIFKTLNPQWHQTLEFPDD---------------- 675 (835)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~d~--~g~~DPyv~v~~--~~~~~kT~v~~~t~nP~wne~f~f~v~---------------- 675 (835)
+....|.++|..++-....-. .|..+..+.+.+ ++++++|+.+.-+.+|.|+|.|.|+++
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 556778888888876533211 145555555554 899999999999999999999999863
Q ss_pred CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCce--eeEEecCC---C---CCcEEEEEEEEEecC
Q 003259 676 GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMA--DKWIPLQG---V---RKGEIHVLITRKVPE 735 (835)
Q Consensus 676 ~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~--~~w~~L~~---~---~~G~i~l~l~~~~p~ 735 (835)
.+.+.+-|.-.|..+...++|.-.++...+...... ..-..|.| . ..|-|.+++++ +|.
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lEL-lP~ 152 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLEL-LPN 152 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEe-ecC
Confidence 346888888888777778999999988877543322 23334433 1 35999999998 554
No 251
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.00 E-value=0.14 Score=50.82 Aligned_cols=85 Identities=16% Similarity=0.161 Sum_probs=61.2
Q ss_pred eEEEEEEEEeecCCcCCcCCCCCCEEEEEE--CCe----EeeeeeecCCCCCeeeeEEEeecC------CCcEEEEEEEC
Q 003259 619 GWIELVIVEARDLVAADLRGTSDPYVKVQY--GDL----KKRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDH 686 (835)
Q Consensus 619 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~----~~kT~v~~~t~nP~wne~f~f~v~------~~~L~i~V~d~ 686 (835)
..++|+|+.+.++.. .....+-||++.+ |++ ...|+.+.-+.++.|||.+.|++. +..|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 468999999999986 2334677888755 654 336666655677999999999863 67899999987
Q ss_pred CCCC----------------CCCeEEEEEEEcccc
Q 003259 687 NALL----------------ASSSIGDCVVEYQRL 705 (835)
Q Consensus 687 d~~~----------------~d~~iG~~~i~l~~l 705 (835)
.... .+..||.+.++|-+-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 5422 246788888877653
No 252
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=94.75 E-value=0.29 Score=47.13 Aligned_cols=91 Identities=12% Similarity=0.159 Sum_probs=64.5
Q ss_pred cEEEEEEEEeecCCCCC--CCCCCCcEEEEEE--CCeEeecccc-CCCCCccceEEEEEeeCC--------------cee
Q 003259 488 RKINVTVVEGKDLMPKD--KSGKCDPYVKLQY--GKIVQRTRTA-HSPNHVWNQKFELDEIGG--------------GEC 548 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~~~--~~g~~dpyv~v~l--g~~~~kT~~~-~t~nP~Wne~f~f~v~~~--------------~~~ 548 (835)
..|.+.|..++-+...- ..+..+.-..+++ +++.++|+.+ .+.+|.|+|.|-|.+..+ .+.
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 37999999999873221 1145555555554 8999999999 999999999999986543 235
Q ss_pred EEEEEEEeccC-CCceEEEEEEeccccccCC
Q 003259 549 LMVKCYNEEIF-GDENMGSARVNLEGLVEGS 578 (835)
Q Consensus 549 L~i~V~d~d~~-~d~~IG~~~i~L~~l~~~~ 578 (835)
+++.|...|.. ...++|+..++...++...
T Consensus 89 ihivli~~d~~~~~~Lv~s~~ldWR~vL~s~ 119 (156)
T PF15627_consen 89 IHIVLIRTDPSGETTLVGSHFLDWRKVLCSG 119 (156)
T ss_pred eEEEEEEecCCCceEeeeeceehHHHHhccC
Confidence 77777766655 4467787777666655443
No 253
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.71 E-value=0.19 Score=48.92 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=60.7
Q ss_pred eEEEEEEEEeecCCcCCcCCCCCCEEEEEE--CCeE----eeeeeecCCCCCeeeeEEEeecC------CCcEEEEEEEC
Q 003259 619 GWIELVIVEARDLVAADLRGTSDPYVKVQY--GDLK----KRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDH 686 (835)
Q Consensus 619 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v~------~~~L~i~V~d~ 686 (835)
..++|.|+.|+++...+ .+|-||++.+ |++. ..|+.+.- .++.|||-+.|++. +..|.|++|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 46889999999987643 4688998866 5542 24554443 67999999999873 67899999997
Q ss_pred CCCC----CCCeEEEEEEEcccc
Q 003259 687 NALL----ASSSIGDCVVEYQRL 705 (835)
Q Consensus 687 d~~~----~d~~iG~~~i~l~~l 705 (835)
..-. ....||.+.++|-+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 6421 224699999988753
No 254
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.29 E-value=0.15 Score=49.73 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=61.0
Q ss_pred CCCCCEEEEEE--CCe----EeeeeeecCCCCCeeeeEEEeecC------CCcEEEEEEECCCCCCCCeEEEEEEEcccc
Q 003259 638 GTSDPYVKVQY--GDL----KKRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHNALLASSSIGDCVVEYQRL 705 (835)
Q Consensus 638 g~~DPyv~v~~--~~~----~~kT~v~~~t~nP~wne~f~f~v~------~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l 705 (835)
..+|-||++.+ +++ ...|..+.-+..+.|||-+.|++. +..|.|+|||.+..++...+|.++++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45788888876 554 236666665777899999999973 678999999998766678999999998754
Q ss_pred CCCCceeeEEecCCCCCcEEEEEEEE
Q 003259 706 PPNQMADKWIPLQGVRKGEIHVLITR 731 (835)
Q Consensus 706 ~~~~~~~~w~~L~~~~~G~i~l~l~~ 731 (835)
. + ++ .+|...+.+..
T Consensus 108 ~-g-----~L-----r~G~~~l~lw~ 122 (159)
T cd08397 108 D-G-----TL-----RRGRQKLRVWP 122 (159)
T ss_pred C-C-----cE-----ecCCEEEEEEe
Confidence 2 1 11 35777777754
No 255
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.23 E-value=0.23 Score=48.35 Aligned_cols=86 Identities=17% Similarity=0.112 Sum_probs=60.3
Q ss_pred eEEEEEEEEeecCCcCCcCCCCCCEEEEEE--CCe----EeeeeeecCCCCCeeeeEEEeecC------CCcEEEEEEEC
Q 003259 619 GWIELVIVEARDLVAADLRGTSDPYVKVQY--GDL----KKRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDH 686 (835)
Q Consensus 619 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~----~~kT~v~~~t~nP~wne~f~f~v~------~~~L~i~V~d~ 686 (835)
..++|.+....++... .....+-||++.+ |++ ...|.......++.|||.+.|++. +..|.|.+|+.
T Consensus 8 ~~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 3567778777777551 1234677777765 553 224444433478999999999963 67899999998
Q ss_pred CCCC--CCCeEEEEEEEcccc
Q 003259 687 NALL--ASSSIGDCVVEYQRL 705 (835)
Q Consensus 687 d~~~--~d~~iG~~~i~l~~l 705 (835)
+..+ .+..||.+.++|-+-
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred ecCCCCcceEEEEEeEEeEcc
Confidence 7654 467999999998754
No 256
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.21 E-value=1.4 Score=42.00 Aligned_cols=111 Identities=17% Similarity=0.224 Sum_probs=76.7
Q ss_pred cceEEEEEEEEeecCCcCCcCCCCCCEEEEEECCeE---eeeeeec-CCCCCeeeeEEEeecC-----------CCcEEE
Q 003259 617 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLK---KRTKVIF-KTLNPQWHQTLEFPDD-----------GSPLTL 681 (835)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~v~~-~t~nP~wne~f~f~v~-----------~~~L~i 681 (835)
..-.+.+.+++..+++. ....-||+...++.. ..|.... .+-.-.|||.|.+++. ...+.|
T Consensus 5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 44677889999998876 223345555555543 3444433 3566799999998852 456889
Q ss_pred EEEECCCCCCCCeEEEEEEEccccCCC--CceeeEEecCCC--CCcEEEEEEEE
Q 003259 682 HVRDHNALLASSSIGDCVVEYQRLPPN--QMADKWIPLQGV--RKGEIHVLITR 731 (835)
Q Consensus 682 ~V~d~d~~~~d~~iG~~~i~l~~l~~~--~~~~~w~~L~~~--~~G~i~l~l~~ 731 (835)
.|+....-++...+|.+.|+|++.... .....-++|.+. ....+++++.+
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~ 134 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISL 134 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEE
Confidence 998875434346999999999998763 456677888764 34778888877
No 257
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.18 E-value=1.3 Score=42.14 Aligned_cols=113 Identities=17% Similarity=0.262 Sum_probs=78.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---Eeecccc--CCCCCccceEEEEEeeC---------CceeEEEEEE
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI---VQRTRTA--HSPNHVWNQKFELDEIG---------GGECLMVKCY 554 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~---~~kT~~~--~t~nP~Wne~f~f~v~~---------~~~~L~i~V~ 554 (835)
.+.+++++..+++. .....||+...++. ..+|... .+..-.||+.|.+.+.. ....+.|.|+
T Consensus 8 ~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~ 83 (143)
T PF10358_consen 8 QFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVF 83 (143)
T ss_pred EEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEE
Confidence 58899999998875 22334555555544 3566655 66678999999988532 1347888888
Q ss_pred EeccC-CCceEEEEEEeccccccC--CeeeeEEecccC--CCceEEEEEEEeecCC
Q 003259 555 NEEIF-GDENMGSARVNLEGLVEG--SVRDIWVPLEKV--NTGELRLQIEATRVDD 605 (835)
Q Consensus 555 d~d~~-~d~~IG~~~i~L~~l~~~--~~~~~w~~L~~~--~~G~I~l~l~~~~~~~ 605 (835)
..... +...+|.+.++|.++... .....-++|... ....|.+++....+..
T Consensus 84 ~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 84 EVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELRE 139 (143)
T ss_pred EecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECcc
Confidence 87533 236999999999999874 355567777764 3577888888776543
No 258
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=93.94 E-value=0.1 Score=61.52 Aligned_cols=87 Identities=17% Similarity=0.273 Sum_probs=69.7
Q ss_pred CCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECC-------eEeeeeeecC-CCCCeeee-EEEeec---C-CCcEEE
Q 003259 615 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-------LKKRTKVIFK-TLNPQWHQ-TLEFPD---D-GSPLTL 681 (835)
Q Consensus 615 ~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-------~~~kT~v~~~-t~nP~wne-~f~f~v---~-~~~L~i 681 (835)
+.-.+.+.|+|+.|.-|..++ ...||.|.+-+ +.++|+++.+ ++||+||| -|.|.- + =..|+|
T Consensus 699 gvIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRi 774 (1189)
T KOG1265|consen 699 GVIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRI 774 (1189)
T ss_pred ceEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheee
Confidence 455789999999999997764 44899999832 4678998875 89999996 677872 2 478999
Q ss_pred EEEECCCCCCCCeEEEEEEEccccCCCC
Q 003259 682 HVRDHNALLASSSIGDCVVEYQRLPPNQ 709 (835)
Q Consensus 682 ~V~d~d~~~~d~~iG~~~i~l~~l~~~~ 709 (835)
.||+.. ..+||+-.+|++.+..+.
T Consensus 775 avyeEg----gK~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 775 AVYEEG----GKFIGQRILPVDGLNAGY 798 (1189)
T ss_pred eeeccC----CceeeeeccchhcccCcc
Confidence 999976 359999999999987764
No 259
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=93.53 E-value=0.27 Score=48.68 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=64.4
Q ss_pred ceEEEEEEEEeecCCcCCcCCCCCCEEEEEE--CCeE----eeeeeec--C--CCCCeeeeEEEeecC------CCcEEE
Q 003259 618 NGWIELVIVEARDLVAADLRGTSDPYVKVQY--GDLK----KRTKVIF--K--TLNPQWHQTLEFPDD------GSPLTL 681 (835)
Q Consensus 618 ~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~v~~--~--t~nP~wne~f~f~v~------~~~L~i 681 (835)
...++|+|..+++++........|-||++.+ |++. ..|+... + ...+.|||.+.|++. +..|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 3578899999999988765556788998866 6543 2444322 1 335789999999973 678999
Q ss_pred EEEECCCCC---------CCCeEEEEEEEcccc
Q 003259 682 HVRDHNALL---------ASSSIGDCVVEYQRL 705 (835)
Q Consensus 682 ~V~d~d~~~---------~d~~iG~~~i~l~~l 705 (835)
.+|+....+ .+..||.+.++|-+-
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999977544 356899999987753
No 260
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=92.96 E-value=0.17 Score=59.70 Aligned_cols=92 Identities=27% Similarity=0.399 Sum_probs=71.1
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE-C------CeEeecccc--CCCCCccceE-EEEE-eeCC-ceeEEEEEE
Q 003259 487 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-G------KIVQRTRTA--HSPNHVWNQK-FELD-EIGG-GECLMVKCY 554 (835)
Q Consensus 487 g~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l-g------~~~~kT~~~--~t~nP~Wne~-f~f~-v~~~-~~~L~i~V~ 554 (835)
.+.+.|+|+++.-|..++ ...||+|.+ | ...++|++. ++.||+|+|. |.|. +..+ -..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 357999999999886554 458999998 2 257899998 9999999874 7776 3333 568999999
Q ss_pred EeccCCCceEEEEEEeccccccCCeeeeEEeccc
Q 003259 555 NEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEK 588 (835)
Q Consensus 555 d~d~~~d~~IG~~~i~L~~l~~~~~~~~w~~L~~ 588 (835)
+.. ..+||+-.++++.+..+. +.+.|..
T Consensus 778 eEg---gK~ig~RIlpvd~l~~GY---rhv~LRs 805 (1189)
T KOG1265|consen 778 EEG---GKFIGQRILPVDGLNAGY---RHVCLRS 805 (1189)
T ss_pred ccC---CceeeeeccchhcccCcc---eeEEecC
Confidence 985 689999999999987765 3455543
No 261
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=92.84 E-value=0.69 Score=45.82 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=61.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----Eeecccc-CCCCCccceEEEEEeeC---C-ceeEEEEEEEec
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI----VQRTRTA-HSPNHVWNQKFELDEIG---G-GECLMVKCYNEE 557 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~l--g~~----~~kT~~~-~t~nP~Wne~f~f~v~~---~-~~~L~i~V~d~d 557 (835)
.++|+|+.+.++.. .....+-||++.+ |++ ...|+.. .+.++.|||.++|.+.- + +..|.|.+|+..
T Consensus 9 ~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 59999999999975 2344667777655 654 3466666 66789999999998543 2 779999999865
Q ss_pred cC-----------------CCceEEEEEEecccc
Q 003259 558 IF-----------------GDENMGSARVNLEGL 574 (835)
Q Consensus 558 ~~-----------------~d~~IG~~~i~L~~l 574 (835)
.. ....||.+.++|-+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 32 135788888887663
No 262
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=92.68 E-value=0.81 Score=44.55 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=68.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----eeccccCCCCCccceEEEEEeeC---C-ceeEEEEEEEecc
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKIV----QRTRTAHSPNHVWNQKFELDEIG---G-GECLMVKCYNEEI 558 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~l--g~~~----~kT~~~~t~nP~Wne~f~f~v~~---~-~~~L~i~V~d~d~ 558 (835)
.++|+|+++.++... ...+-||++.+ |++. ..|+.+...++.|||..+|.+.- + +..|.|.+|+...
T Consensus 9 ~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~ 85 (158)
T cd08398 9 NLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLDYDIYIPDLPRSARLCLSICSVKG 85 (158)
T ss_pred CeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCCCCCccceeEEcccchhcCChhheEEEEEEEEec
Confidence 589999999998653 34678888866 6543 34555533679999999998543 2 7799999999764
Q ss_pred C-----CCceEEEEEEeccccccCCeeeeEEecccCCCceEEEEEEE
Q 003259 559 F-----GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEA 600 (835)
Q Consensus 559 ~-----~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~~~G~I~l~l~~ 600 (835)
. ....+|.+.++|-+... .| .+|...+.+-.
T Consensus 86 ~~~~k~~~~~iG~~ni~LFd~~~--------~L---r~G~~~L~lW~ 121 (158)
T cd08398 86 RKGAKEEHCPLAWGNINLFDYTD--------TL---VSGKMALNLWP 121 (158)
T ss_pred ccCCCCceEEEEEEEEEEECCCC--------hh---hCCCEEEEEEc
Confidence 2 12469999998877421 11 25777777754
No 263
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=91.36 E-value=1.1 Score=44.34 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=44.7
Q ss_pred EEEEEEEEeecCCcCCcCCCCCCEEEEEE--CCe---EeeeeeecCCCCCeeeeEEEeecC------CCcEEEEEEECC
Q 003259 620 WIELVIVEARDLVAADLRGTSDPYVKVQY--GDL---KKRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHN 687 (835)
Q Consensus 620 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~---~~kT~v~~~t~nP~wne~f~f~v~------~~~L~i~V~d~d 687 (835)
.++|.|..+. .+..+......-||++.+ |+. ..+|....-+.+|.|||.+.|++. ...|.|.||+..
T Consensus 11 ~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeec-ccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 5677777776 333332323345666544 553 236666666778999999999973 678999999974
No 264
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=90.69 E-value=1.9 Score=37.35 Aligned_cols=83 Identities=17% Similarity=0.242 Sum_probs=60.9
Q ss_pred CCcEEEEEEC-CeEeeccccCCCCCccceEEEEEeeCCceeEEEEEEEeccCCCceEEEEEEeccccccCCeeeeEEecc
Q 003259 509 CDPYVKLQYG-KIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLE 587 (835)
Q Consensus 509 ~dpyv~v~lg-~~~~kT~~~~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~~d~~IG~~~i~L~~l~~~~~~~~w~~L~ 587 (835)
.+..|.+.++ +.+.+|.-....+..|++.|.+. .+....|+|.||-+|. ..+.|...+.|++... ..-.+++
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~s~q~WDQ~Fti~-LdRsRELEI~VywrD~--RslCav~~lrLEd~~~----~~~~~le 81 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPKSNQAWDQSFTLE-LERSRELEIAVYWRDW--RSLCAVKFLKLEDERH----EVQLDME 81 (98)
T ss_pred cceEEEEEEcCeEEeeccccccccccccceeEEE-eecccEEEEEEEEecc--hhhhhheeeEhhhhcc----cceeccc
Confidence 5778889995 57888888855788999999998 4556679999998775 5677888888888433 2334554
Q ss_pred cCCCceEEEEEEE
Q 003259 588 KVNTGELRLQIEA 600 (835)
Q Consensus 588 ~~~~G~I~l~l~~ 600 (835)
+ +|.+...+.|
T Consensus 82 p--qg~l~~ev~f 92 (98)
T cd08687 82 P--QLCLVAELTF 92 (98)
T ss_pred c--ccEEEEEEEe
Confidence 3 6777777665
No 265
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=90.42 E-value=1.6 Score=42.38 Aligned_cols=85 Identities=19% Similarity=0.221 Sum_probs=60.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----Eeecccc-CCCCCccceEEEEEeeC---C-ceeEEEEEEEec
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI----VQRTRTA-HSPNHVWNQKFELDEIG---G-GECLMVKCYNEE 557 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~l--g~~----~~kT~~~-~t~nP~Wne~f~f~v~~---~-~~~L~i~V~d~d 557 (835)
.++|+++...++... .....+-||++.+ |++ ...|... ...++.|||..+|.+.- + +..|.|.+|+.+
T Consensus 9 ~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 588888888887541 1334666777765 554 3345444 55789999999998532 2 779999999976
Q ss_pred cC---CCceEEEEEEecccc
Q 003259 558 IF---GDENMGSARVNLEGL 574 (835)
Q Consensus 558 ~~---~d~~IG~~~i~L~~l 574 (835)
.. .+..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 54 257899999998774
No 266
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=88.67 E-value=1.8 Score=42.28 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=59.5
Q ss_pred CCCCCcEEEEEE--CCe----Eeecccc-CCCCCccceEEEEEeeC---C-ceeEEEEEEEeccC-CCceEEEEEEeccc
Q 003259 506 SGKCDPYVKLQY--GKI----VQRTRTA-HSPNHVWNQKFELDEIG---G-GECLMVKCYNEEIF-GDENMGSARVNLEG 573 (835)
Q Consensus 506 ~g~~dpyv~v~l--g~~----~~kT~~~-~t~nP~Wne~f~f~v~~---~-~~~L~i~V~d~d~~-~d~~IG~~~i~L~~ 573 (835)
...++-||++.+ |++ ..+|+.+ -+..+.|||...|.+.- + +..|.|.+|+.+.. +...+|.+.++|-+
T Consensus 27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 345677888766 544 3366666 66778999999998643 2 77999999998755 56789999999877
Q ss_pred cccCCeeeeEEecccCCCceEEEEEEEe
Q 003259 574 LVEGSVRDIWVPLEKVNTGELRLQIEAT 601 (835)
Q Consensus 574 l~~~~~~~~w~~L~~~~~G~I~l~l~~~ 601 (835)
. ++ + | .+|...+.+...
T Consensus 107 ~-~g-----~--L---r~G~~~l~lw~~ 123 (159)
T cd08397 107 K-DG-----T--L---RRGRQKLRVWPD 123 (159)
T ss_pred C-CC-----c--E---ecCCEEEEEEeC
Confidence 4 22 1 1 247777776543
No 267
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=88.38 E-value=1.4 Score=42.03 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=45.8
Q ss_pred eeeeecCC-CCCeeeeEEEeecC------CCcEEEEEEECCCCCCC----CeEEEEEEEccccCCCCceeeEEecCCCCC
Q 003259 654 RTKVIFKT-LNPQWHQTLEFPDD------GSPLTLHVRDHNALLAS----SSIGDCVVEYQRLPPNQMADKWIPLQGVRK 722 (835)
Q Consensus 654 kT~v~~~t-~nP~wne~f~f~v~------~~~L~i~V~d~d~~~~d----~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~ 722 (835)
.|+...-+ .++.|||.+.|++. +..|.|.||+.+..... ..||.+.++|-+-.. .. ..
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~--~L---------~~ 91 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRG--QL---------RQ 91 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTS--BB---------EE
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCC--cc---------cC
Confidence 66666666 89999999999962 67899999998765555 699999999875521 11 24
Q ss_pred cEEEEEE
Q 003259 723 GEIHVLI 729 (835)
Q Consensus 723 G~i~l~l 729 (835)
|...+.+
T Consensus 92 G~~~L~l 98 (142)
T PF00792_consen 92 GPQKLSL 98 (142)
T ss_dssp EEEEEE-
T ss_pred CCEEEEE
Confidence 7777777
No 268
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=87.51 E-value=2.8 Score=37.45 Aligned_cols=68 Identities=21% Similarity=0.249 Sum_probs=47.1
Q ss_pred EEEEEEEeecCCcCCcCCCCCCEEEEEE--CCe----EeeeeeecCCCCCeeeeEEEeecC------CCcEEEEEEECCC
Q 003259 621 IELVIVEARDLVAADLRGTSDPYVKVQY--GDL----KKRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHNA 688 (835)
Q Consensus 621 L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~----~~kT~v~~~t~nP~wne~f~f~v~------~~~L~i~V~d~d~ 688 (835)
+.+.+..+++.........+|-||++.+ |++ ...|+.+.-...+.|||-+.|++. +..|.+.+|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 5566667777655443333588998866 554 335655555666999999999863 6789999998653
No 269
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=87.29 E-value=4.1 Score=35.34 Aligned_cols=83 Identities=11% Similarity=0.055 Sum_probs=58.4
Q ss_pred CCCCEEEEEECCe-EeeeeeecCCCCCeeeeEEEeecC-CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceeeEEe
Q 003259 639 TSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIP 716 (835)
Q Consensus 639 ~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~-~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~w~~ 716 (835)
.++-.+.+.+.+. ..+|.-.. ..+..||+.|.+..+ ...|+|.||-+|- ..+-|-..+-|.+.. +..-++
T Consensus 8 ~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdRsRELEI~VywrD~---RslCav~~lrLEd~~----~~~~~~ 79 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELERSRELEIAVYWRDW---RSLCAVKFLKLEDER----HEVQLD 79 (98)
T ss_pred ccceEEEEEEcCeEEeeccccc-cccccccceeEEEeecccEEEEEEEEecc---hhhhhheeeEhhhhc----ccceec
Confidence 3677888888774 45665543 367899999999987 7899999998875 336677777777632 223334
Q ss_pred cCCCCCcEEEEEEEE
Q 003259 717 LQGVRKGEIHVLITR 731 (835)
Q Consensus 717 L~~~~~G~i~l~l~~ 731 (835)
+. +.|.+...++|
T Consensus 80 le--pqg~l~~ev~f 92 (98)
T cd08687 80 ME--PQLCLVAELTF 92 (98)
T ss_pred cc--cccEEEEEEEe
Confidence 44 46888888776
No 270
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=86.80 E-value=4 Score=40.54 Aligned_cols=101 Identities=20% Similarity=0.194 Sum_probs=62.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE---eecccc-CCCCCccceEEEEEeeC---C-ceeEEEEEEEecc
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKIV---QRTRTA-HSPNHVWNQKFELDEIG---G-GECLMVKCYNEEI 558 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~l--g~~~---~kT~~~-~t~nP~Wne~f~f~v~~---~-~~~L~i~V~d~d~ 558 (835)
.++|+|+++..+. .+......-||++.+ |++. .+|... -+.++.|||...|.+.- + ...|.|.||+...
T Consensus 11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 5888888887442 222333445666655 6543 256666 66789999999998543 2 7789999998632
Q ss_pred C-----------------CCceEEEEEEeccccccCCeeeeEEecccCCCceEEEEEEEe
Q 003259 559 F-----------------GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT 601 (835)
Q Consensus 559 ~-----------------~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~~~G~I~l~l~~~ 601 (835)
. .+..||.+.++|-+... .| .+|+..+.+-..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~--------~L---r~G~~~L~~W~~ 138 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF--------LL---RTGEYVLHMWQI 138 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEcCCC--------ce---ecCCEEEEEecC
Confidence 1 13456667766655321 11 257777777443
No 271
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=86.38 E-value=1.2 Score=46.95 Aligned_cols=115 Identities=15% Similarity=0.036 Sum_probs=79.2
Q ss_pred CcceEEEEEEEEeecCCcCC--cCCCCCCEEEEEECCe-EeeeeeecCCCCCeeeeEEEeecC-CCcEEEEEEECCCCCC
Q 003259 616 SGNGWIELVIVEARDLVAAD--LRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLA 691 (835)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~d--~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~-~~~L~i~V~d~d~~~~ 691 (835)
...|.|.++++.+++|.... .+-+.+-||.+....+ +.+|.+.....-=.|.|+|...+. ...+.+-||.++.--+
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~~vl~~lvySW~pq~R 127 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNIEVLHYLVYSWPPQRR 127 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccceeeeEEEeecCchhh
Confidence 55699999999999996443 3556789999998764 678888777777789999999875 6778899988876555
Q ss_pred CCeEEEEEEEccccCCCCceeeEEecCCCCCcEEEEEEEE
Q 003259 692 SSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR 731 (835)
Q Consensus 692 d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~l~~ 731 (835)
+++.-.--+.+..+.. +..++-+.|.=.++|++.+.+-+
T Consensus 128 HKLC~~g~l~~~~v~r-qspd~~~Al~lePrgq~~~r~~~ 166 (442)
T KOG1452|consen 128 HKLCHLGLLEAFVVDR-QSPDRVVALYLEPRGQPPLRLPL 166 (442)
T ss_pred ccccccchhhhhhhhh-cCCcceeeeecccCCCCceeccc
Confidence 5443222333333322 22344455554567888877766
No 272
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=85.88 E-value=3.5 Score=40.73 Aligned_cols=101 Identities=22% Similarity=0.240 Sum_probs=68.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----eecccc-----CCCCCccceEEEEEeeC---C-ceeEEEEE
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKIV----QRTRTA-----HSPNHVWNQKFELDEIG---G-GECLMVKC 553 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~l--g~~~----~kT~~~-----~t~nP~Wne~f~f~v~~---~-~~~L~i~V 553 (835)
.+.|+|..+.+++........+-|+.+.+ |++. ..|+.. -...+.|||..+|.+.- + +..|.|.+
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 68999999999977654456778888766 6543 344422 23357799999998643 2 77999999
Q ss_pred EEeccC----------CCceEEEEEEeccccccCCeeeeEEecccCCCceEEEEEEE
Q 003259 554 YNEEIF----------GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEA 600 (835)
Q Consensus 554 ~d~d~~----------~d~~IG~~~i~L~~l~~~~~~~~w~~L~~~~~G~I~l~l~~ 600 (835)
|+.... .+..||.+.++|-+... .| .+|...+.+-.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~--------~L---~~G~~~L~lW~ 134 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG--------VL---RQGSLLLGLWP 134 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcchh--------hh---ccCCEEEEecc
Confidence 986643 24689999998877421 11 24677776643
No 273
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=82.77 E-value=12 Score=35.69 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=45.2
Q ss_pred cEEEEEE--CCe-----Eeecccc-CC-CCCccceEEEEEeeC----CceeEEEEEEEeccC-CC----ceEEEEEEecc
Q 003259 511 PYVKLQY--GKI-----VQRTRTA-HS-PNHVWNQKFELDEIG----GGECLMVKCYNEEIF-GD----ENMGSARVNLE 572 (835)
Q Consensus 511 pyv~v~l--g~~-----~~kT~~~-~t-~nP~Wne~f~f~v~~----~~~~L~i~V~d~d~~-~d----~~IG~~~i~L~ 572 (835)
-||.+.+ |++ ...|+.. .+ .++.|||..+|.+.- .+..|.|.||..+.. .. ..||.+.++|-
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lF 83 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLF 83 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeE
Confidence 3555544 543 3366666 55 799999999998643 378999999998766 33 68999999988
Q ss_pred cc
Q 003259 573 GL 574 (835)
Q Consensus 573 ~l 574 (835)
+.
T Consensus 84 d~ 85 (142)
T PF00792_consen 84 DY 85 (142)
T ss_dssp -T
T ss_pred CC
Confidence 75
No 274
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=82.65 E-value=11 Score=37.85 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=38.8
Q ss_pred Eeecccc-CCCCCccceEEEEEeeCC---ceeEEEEEEEeccC---CCceEEEEEEecc
Q 003259 521 VQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF---GDENMGSARVNLE 572 (835)
Q Consensus 521 ~~kT~~~-~t~nP~Wne~f~f~v~~~---~~~L~i~V~d~d~~---~d~~IG~~~i~L~ 572 (835)
.++|-+. ++.+|.|+|++.+.+... ...|.|++++.... ....+|.+.++|-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 5788888 999999999999987653 67888888775433 1256777666663
No 275
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=82.02 E-value=3.1 Score=43.87 Aligned_cols=112 Identities=19% Similarity=0.157 Sum_probs=68.3
Q ss_pred cEEEEEEEEeecCCC--CCCCCCCCcEEEEEECC-eEeecccc-CCCCCccceEEEEEeeCCceeEEEEEEEeccC-CCc
Q 003259 488 RKINVTVVEGKDLMP--KDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDE 562 (835)
Q Consensus 488 ~~L~V~V~~a~~L~~--~~~~g~~dpyv~v~lg~-~~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~-~d~ 562 (835)
|+|.+++..+++|.. ....-..+-||.+..+. ...+|.+- ....-.|.|+|+..+.. ...+.+-||.++.- +..
T Consensus 51 GiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~RHK 129 (442)
T KOG1452|consen 51 GILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQRRHK 129 (442)
T ss_pred ceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchhhcc
Confidence 499999999999943 22344567899998864 35566666 66666899999987554 33567777777654 333
Q ss_pred eEEEEEEeccccccCCeeeeEEecccCCCceEEEEEEEe
Q 003259 563 NMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT 601 (835)
Q Consensus 563 ~IG~~~i~L~~l~~~~~~~~w~~L~~~~~G~I~l~l~~~ 601 (835)
+.-.-.+.+..+.... .++-+.|.-..+|.+.+++.+.
T Consensus 130 LC~~g~l~~~~v~rqs-pd~~~Al~lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 130 LCHLGLLEAFVVDRQS-PDRVVALYLEPRGQPPLRLPLA 167 (442)
T ss_pred ccccchhhhhhhhhcC-CcceeeeecccCCCCceecccC
Confidence 3222233333333222 2233333333468888887654
No 276
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=81.97 E-value=6.7 Score=35.50 Aligned_cols=90 Identities=19% Similarity=0.242 Sum_probs=48.4
Q ss_pred EEEEEECC-eEeeeeeecCCCCCeeeeEEEeecC----------CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCC--
Q 003259 643 YVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD----------GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQ-- 709 (835)
Q Consensus 643 yv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~v~----------~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~-- 709 (835)
||.+.+-. +.+.|.++. ..+|.+|-+..|.|. ...+.++++..-. ...+.+|.+.+++..+....
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~~ 79 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNGE 79 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCCc
Confidence 45555544 566777776 799999998888863 5789999987663 33679999999999885322
Q ss_pred ceeeEEecC---CCCCcEEEEEEEEEec
Q 003259 710 MADKWIPLQ---GVRKGEIHVLITRKVP 734 (835)
Q Consensus 710 ~~~~w~~L~---~~~~G~i~l~l~~~~p 734 (835)
....-..|. +..-|.|.+.++++.|
T Consensus 80 ~i~~~~~l~g~~~~~~g~l~y~~rl~~P 107 (107)
T PF11618_consen 80 RIHGSATLVGVSGEDFGTLEYWIRLRVP 107 (107)
T ss_dssp -EEEEEEE-BSSS-TSEEEEEEEEEEE-
T ss_pred eEEEEEEEeccCCCeEEEEEEEEEecCC
Confidence 344444553 3445888888887654
No 277
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=80.82 E-value=13 Score=37.26 Aligned_cols=53 Identities=11% Similarity=0.036 Sum_probs=40.0
Q ss_pred eEeecccc-CCCCCccceEEEEEeeCC---ceeEEEEEEEeccC--CC---ceEEEEEEecc
Q 003259 520 IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF--GD---ENMGSARVNLE 572 (835)
Q Consensus 520 ~~~kT~~~-~t~nP~Wne~f~f~v~~~---~~~L~i~V~d~d~~--~d---~~IG~~~i~L~ 572 (835)
..++|-+. .+.+|.|+|++.+.+... ...|.|.+++.... +| ..+|.+.++|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 46888888 999999999999987653 77899998875432 22 46777777764
No 278
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=79.81 E-value=6.1 Score=38.94 Aligned_cols=68 Identities=24% Similarity=0.313 Sum_probs=54.1
Q ss_pred CCCcEEEEEEC-CeEeecccc---CCCCCccceEEEEEeeCCceeEEEEEEEeccCCCceEEEEEEeccccc
Q 003259 508 KCDPYVKLQYG-KIVQRTRTA---HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLV 575 (835)
Q Consensus 508 ~~dpyv~v~lg-~~~~kT~~~---~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~~d~~IG~~~i~L~~l~ 575 (835)
...-|+++.++ +++.+|+.. ....-.|+|.|.+.+..-...|.+++|......+..|+.+.+++-...
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence 45668999995 567777776 344456799999998887889999999988778899999999986654
No 279
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=75.93 E-value=6 Score=39.56 Aligned_cols=55 Identities=9% Similarity=0.099 Sum_probs=34.8
Q ss_pred eeeeccCCCCCCcccceeEEEEEcC---CceEEEEEEEeCCCCCCc--ceeEEEEEeccc
Q 003259 350 TRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVKY--DYLTSCEVKMKY 404 (835)
Q Consensus 350 ~~t~~i~~~~nP~W~etf~~~v~~~---~~~L~~~v~d~~~~~~kd--d~LG~~~i~L~~ 404 (835)
..|++...+.+|.|+|+|-+.+... ...|.|.+|+......++ ..+|.+.+||-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 5566677889999999999988763 469999999977533333 599999999966
No 280
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=74.91 E-value=6.8 Score=39.33 Aligned_cols=54 Identities=17% Similarity=0.226 Sum_probs=41.4
Q ss_pred eeeeeccCCCCCCcccceeEEEEEcC---CceEEEEEEEeCCCCCCc---ceeEEEEEec
Q 003259 349 LTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVKY---DYLTSCEVKM 402 (835)
Q Consensus 349 ~~~t~~i~~~~nP~W~etf~~~v~~~---~~~L~~~v~d~~~~~~kd---d~LG~~~i~L 402 (835)
..++.+.+...+|.|+|++-+.+... ...|.|.+++......+| ..+|-+.+||
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 36777778899999999999988653 569999999865422233 3789888887
No 281
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=74.50 E-value=16 Score=32.50 Aligned_cols=69 Identities=17% Similarity=0.177 Sum_probs=46.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----eecccc-CCCCCccceEEEEEeeC---C-ceeEEEEEEEecc
Q 003259 490 INVTVVEGKDLMPKDKSGKCDPYVKLQY--GKIV----QRTRTA-HSPNHVWNQKFELDEIG---G-GECLMVKCYNEEI 558 (835)
Q Consensus 490 L~V~V~~a~~L~~~~~~g~~dpyv~v~l--g~~~----~kT~~~-~t~nP~Wne~f~f~v~~---~-~~~L~i~V~d~d~ 558 (835)
+.+.+..+.+..........+-||++.+ |++. ..|+.+ ....+.|||...|.+.- + +..|.|.+|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 5667777777654332223578888866 6542 356666 56679999999997543 2 7789999998653
No 282
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=74.36 E-value=6.8 Score=39.17 Aligned_cols=53 Identities=15% Similarity=0.291 Sum_probs=40.8
Q ss_pred eeeeccCCCCCCcccceeEEEEEcC---CceEEEEEEEeCCCCCCc-ceeEEEEEec
Q 003259 350 TRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVKY-DYLTSCEVKM 402 (835)
Q Consensus 350 ~~t~~i~~~~nP~W~etf~~~v~~~---~~~L~~~v~d~~~~~~kd-d~LG~~~i~L 402 (835)
.++.+...+.+|.|+|++-+.+... ...|.|.++++.....++ ..+|.+.+||
T Consensus 55 ~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 55 YRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred EEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 5677788899999999999988653 469999999865422222 4799999887
No 283
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=72.64 E-value=26 Score=31.66 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=37.2
Q ss_pred EEEEEECC-eEeeccccCCCCCccceEEEEEeeCC--------ceeEEEEEEEeccCCCceEEEEEEeccccccCC
Q 003259 512 YVKLQYGK-IVQRTRTAHSPNHVWNQKFELDEIGG--------GECLMVKCYNEEIFGDENMGSARVNLEGLVEGS 578 (835)
Q Consensus 512 yv~v~lg~-~~~kT~~~~t~nP~Wne~f~f~v~~~--------~~~L~i~V~d~d~~~d~~IG~~~i~L~~l~~~~ 578 (835)
||.+.+-. +.+.|.++.+.+|.+|-+-.|.+..+ ...+.++++......-..+|.+.+++..+++..
T Consensus 2 Fct~dFydfEtq~Tpvv~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~ 77 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVRGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESN 77 (107)
T ss_dssp EEEE-STT---EE---EESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--
T ss_pred EEEEEeeceeeecccceeCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCC
Confidence 56666643 56667666788999999999987654 468999998876446679999999999998554
No 284
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=71.72 E-value=12 Score=37.32 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=33.3
Q ss_pred eEeeeeeecCCCCCeeeeEEEeecC-----CCcEEEEEEECCCCCC---CCeEEEEEEEccc
Q 003259 651 LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLA---SSSIGDCVVEYQR 704 (835)
Q Consensus 651 ~~~kT~v~~~t~nP~wne~f~f~v~-----~~~L~i~V~d~d~~~~---d~~iG~~~i~l~~ 704 (835)
..+.|.+...+.+|.|+|+|-+.++ +.-|.|++++...-.+ +..+|.+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3568888889999999999988764 5679999998664321 1699999999986
No 285
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=69.77 E-value=46 Score=35.95 Aligned_cols=105 Identities=13% Similarity=0.211 Sum_probs=73.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCC-CCc-cceEEEEEeeCCceeEEEEEEEeccCCCceEE
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSP-NHV-WNQKFELDEIGGGECLMVKCYNEEIFGDENMG 565 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~~kT~~~-~t~-nP~-Wne~f~f~v~~~~~~L~i~V~d~d~~~d~~IG 565 (835)
.|-|.|++..++. .....|+++..|+...+|..+ -+. +-. -.+.....+..-+..|++.+|-....+..-||
T Consensus 59 ~LLVeI~EI~~i~-----k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLvkk~hIg 133 (508)
T PTZ00447 59 YLLVKINEIFNIN-----KYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLTKKVHIG 133 (508)
T ss_pred eEEEEehhhhccc-----cceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccccceeEEE
Confidence 5778888877663 345789999999999999777 222 222 23333333344477899999987766888999
Q ss_pred EEEEeccc-cccCC-eeeeEEecccCC--CceEEEEE
Q 003259 566 SARVNLEG-LVEGS-VRDIWVPLEKVN--TGELRLQI 598 (835)
Q Consensus 566 ~~~i~L~~-l~~~~-~~~~w~~L~~~~--~G~I~l~l 598 (835)
.+.+.++. +..+. +...||.+...+ .++|.+|+
T Consensus 134 dI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSF 170 (508)
T PTZ00447 134 QIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSF 170 (508)
T ss_pred EEEecccHHHHhccCCccceEEEecCCceeeeEEEEe
Confidence 99999865 55554 788999996543 56777776
No 286
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=67.18 E-value=7.2 Score=45.92 Aligned_cols=167 Identities=11% Similarity=0.025 Sum_probs=95.2
Q ss_pred CCCCcEEEEEECC-eEeecccc-CCCCCccceEEEEEeeCCceeEEEEEEEeccC-CCceEEEEEEeccccccC-Ceeee
Q 003259 507 GKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMGSARVNLEGLVEG-SVRDI 582 (835)
Q Consensus 507 g~~dpyv~v~lg~-~~~kT~~~-~t~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~-~d~~IG~~~i~L~~l~~~-~~~~~ 582 (835)
...+||+.+.+.. +...+.+. .+..|.|+++|...+ .....+.|.++.+... .+.....+++..+++... .....
T Consensus 26 ~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v-~~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~ 104 (694)
T KOG0694|consen 26 QALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEV-VAGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRL 104 (694)
T ss_pred hhhhhhheeccceeecccccCCCCCCCchhhhheeeee-ecCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhh
Confidence 3468898888853 44455556 899999999999984 4445577777776533 333333444444443322 24457
Q ss_pred EEecccCCCceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecCCC
Q 003259 583 WVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTL 662 (835)
Q Consensus 583 w~~L~~~~~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~ 662 (835)
|..++. .|++...+.+.....+... .......+ .+......|..+--=...+.+.++...-.+.-.
T Consensus 105 w~~~~~--~g~~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~~rrga~~~~kVhei~gH~F~aT~l~Qpt 170 (694)
T KOG0694|consen 105 WVLIEE--LGTLLKPAALTGTLEPGRT--KSVFSPEP----------FFSKPRRRGAISQSKVHEIDGHKFGATSLRQPT 170 (694)
T ss_pred cccccc--ccceeeeecccCcCCcCcc--ccccccCc----------cccCcccccccccceeEEeeCcEEEEeeccCcc
Confidence 888765 5888888877642221110 00000000 111100111111111156666666555555666
Q ss_pred CCeeeeEEEeecCCCcEEEEEEECCC
Q 003259 663 NPQWHQTLEFPDDGSPLTLHVRDHNA 688 (835)
Q Consensus 663 nP~wne~f~f~v~~~~L~i~V~d~d~ 688 (835)
+..|...|...+..+.+.++++..+-
T Consensus 171 ~Cs~C~kFi~gL~kqGyQCqvC~~vv 196 (694)
T KOG0694|consen 171 FCSWCQKFIWGLRKQGYQCQVCWRVV 196 (694)
T ss_pred hhhhhhhheeccCCCceEEeeeeehH
Confidence 77899999998877788888876653
No 287
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=65.56 E-value=25 Score=34.65 Aligned_cols=65 Identities=12% Similarity=0.245 Sum_probs=49.2
Q ss_pred CCCEEEEEECCe-Eeeeeeec--CCCCCeeeeEEEeecC--CCcEEEEEEECCCCCCCCeEEEEEEEcccc
Q 003259 640 SDPYVKVQYGDL-KKRTKVIF--KTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIGDCVVEYQRL 705 (835)
Q Consensus 640 ~DPyv~v~~~~~-~~kT~v~~--~t~nP~wne~f~f~v~--~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l 705 (835)
..-|+++.++++ ..+|+... ....-.|||.|.+.+. ...|.++||.... ..+..|+++.+|+-..
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~ 106 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGS 106 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCC
Confidence 456899999885 34555443 3444567899999886 6889999999887 6688999999997644
No 288
>PF07069 PRRSV_2b: Porcine reproductive and respiratory syndrome virus 2b ; InterPro: IPR009775 This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion [].
Probab=65.53 E-value=11 Score=29.55 Aligned_cols=31 Identities=10% Similarity=0.325 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHH--HHHhhhh
Q 003259 39 PLVLLLWVFERWLFSFSNWVPLAI--AVWATVQ 69 (835)
Q Consensus 39 ~~~~~~~~~~~~~~s~~~w~~~~~--~~~~~~~ 69 (835)
+.-+..++...|+|.+++|+.+++ .+|++..
T Consensus 26 ivdiiiflailfgftiagwlvvfcirlv~sail 58 (73)
T PF07069_consen 26 IVDIIIFLAILFGFTIAGWLVVFCIRLVCSAIL 58 (73)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333444555667888889987766 4554443
No 289
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=59.81 E-value=1.1e+02 Score=34.37 Aligned_cols=127 Identities=13% Similarity=0.272 Sum_probs=72.5
Q ss_pred CCCCEEEEEECCeEeeeeeecC----CCCC-ee-e--eEEEeec--------C------CCcEEEEEEECCC-----C-C
Q 003259 639 TSDPYVKVQYGDLKKRTKVIFK----TLNP-QW-H--QTLEFPD--------D------GSPLTLHVRDHNA-----L-L 690 (835)
Q Consensus 639 ~~DPyv~v~~~~~~~kT~v~~~----t~nP-~w-n--e~f~f~v--------~------~~~L~i~V~d~d~-----~-~ 690 (835)
.+..||+|.+.+-..+|..+.= +.+| .- + -.|++.- . ...|+|.||.-.. + .
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 4577999999886666655432 1111 11 1 2444431 1 2569999998543 2 4
Q ss_pred CCCeEEEEEEEcccc-CCCC---ceeeEEecCCCC-------CcEEEEEEEEEecCCcccccCCCC-CCcceeEEccccc
Q 003259 691 ASSSIGDCVVEYQRL-PPNQ---MADKWIPLQGVR-------KGEIHVLITRKVPELDKRTSIDSD-SSSTRAHKISGQM 758 (835)
Q Consensus 691 ~d~~iG~~~i~l~~l-~~~~---~~~~w~~L~~~~-------~G~i~l~l~~~~p~~~~~~~~~~~-~p~~k~~~~~~~~ 758 (835)
..++||.+.|+++-- ..++ -+..|..+...+ ..++|+.+.. -|+-.-.-..+.. .-..+|..+++.+
T Consensus 115 ~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~-EpDPRfVFQFdgepecSPQV~QiqG~~ 193 (460)
T PF06219_consen 115 SGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRA-EPDPRFVFQFDGEPECSPQVFQIQGNI 193 (460)
T ss_pred cceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEec-cCCCeeEEEcCCccccCcEEEEecCcc
Confidence 568999999998822 2222 257899995432 4688888876 3321111112211 1234677777777
Q ss_pred hhheeeec
Q 003259 759 KQMMVKFQ 766 (835)
Q Consensus 759 r~~l~k~~ 766 (835)
||-+=..|
T Consensus 194 rQPvFsCK 201 (460)
T PF06219_consen 194 RQPVFSCK 201 (460)
T ss_pred ccceeEEE
Confidence 76554433
No 290
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=54.66 E-value=24 Score=35.11 Aligned_cols=52 Identities=8% Similarity=0.120 Sum_probs=38.0
Q ss_pred eeccCCCCCCcccceeEEEEEcC---CceEEEEEEEeCCCC----CCcceeEEEEEecc
Q 003259 352 RTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGH----VKYDYLTSCEVKMK 403 (835)
Q Consensus 352 t~~i~~~~nP~W~etf~~~v~~~---~~~L~~~v~d~~~~~----~kdd~LG~~~i~L~ 403 (835)
++++....+|.|+|+|-+.+... ...|.|++|+..... .....+|.+.+||-
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 44444449999999999988543 569999999977421 12348999999984
No 291
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=49.61 E-value=41 Score=33.40 Aligned_cols=52 Identities=10% Similarity=0.160 Sum_probs=37.8
Q ss_pred EeeeeeecCCCCCeeeeEEEeecC-----CCcEEEEEEECCCC-----CCCCeEEEEEEEccc
Q 003259 652 KKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNAL-----LASSSIGDCVVEYQR 704 (835)
Q Consensus 652 ~~kT~v~~~t~nP~wne~f~f~v~-----~~~L~i~V~d~d~~-----~~d~~iG~~~i~l~~ 704 (835)
.+.|-+..+ .+|.|+|++-+.++ ...|.|++++-..- .....+|.+.+||-+
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 344444444 99999999988764 56799999986632 235689999998874
No 292
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=49.34 E-value=43 Score=33.48 Aligned_cols=56 Identities=7% Similarity=0.023 Sum_probs=41.1
Q ss_pred eeeeeccCCCCCCcccceeEEEEEcC---CceEEEEEEEeCCCC-C-------CcceeEEEEEeccc
Q 003259 349 LTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGH-V-------KYDYLTSCEVKMKY 404 (835)
Q Consensus 349 ~~~t~~i~~~~nP~W~etf~~~v~~~---~~~L~~~v~d~~~~~-~-------kdd~LG~~~i~L~~ 404 (835)
...|.+...+.+|.|.|++-+.+.-. ...|.|+.|+..-.. . ....+|-+.+||-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 45677777889999999999887653 569999999976211 1 12468999988843
No 293
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=47.90 E-value=56 Score=32.53 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=40.6
Q ss_pred eEeeeeeecCCCCCeeeeEEEeecC-----CCcEEEEEEECCCCC------CCCeEEEEEEEccc
Q 003259 651 LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALL------ASSSIGDCVVEYQR 704 (835)
Q Consensus 651 ~~~kT~v~~~t~nP~wne~f~f~v~-----~~~L~i~V~d~d~~~------~d~~iG~~~i~l~~ 704 (835)
....|.|...+.+|.|+|++-+.++ ..-|.|+.++-+.-. ....+|.+.+||-.
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 4568899999999999999988864 567899988744211 13568888888763
No 294
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=46.02 E-value=1.2e+02 Score=35.79 Aligned_cols=161 Identities=16% Similarity=0.199 Sum_probs=94.3
Q ss_pred CcccccEEEEEEecCCCCCccceeEEEeCC-------------------CCCe-----EEEEEEEEeeCCchhhhhhhhh
Q 003259 138 PRLIEKIELQEFSLGSTSPCLGLHGTRWSS-------------------SGDQ-----RVMQLGFDWDANDISILLLAKL 193 (835)
Q Consensus 138 P~~i~~i~~~~f~LG~~pp~i~~ir~~~~~-------------------~~d~-----~~~d~~~~~~~~~~~~~l~~~~ 193 (835)
-..+..+.+.+.-||.+-|.+.+.+++.-. .-|. +.+=.+.+|.|++... ..+..
T Consensus 143 g~LL~~~~i~elElg~~f~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTts-id~~s 221 (1051)
T KOG3532|consen 143 GRLLQEIRIRELELGTKFMTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTS-IDVST 221 (1051)
T ss_pred hhhhcccceehhhhccccccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCccee-cCCcc
Confidence 456899999999999999999999998721 0011 1233455666665221 11110
Q ss_pred cCCcce-eeEEEEEEEEEEEEEEEeEeeec-cEEEEEeccCCeEEE--EeeecCCCCCcCCCCCCccHHHHHHHHHHHHh
Q 003259 194 AKPLLG-TAKIVINSLHIKGDLLVMPILEG-KAVLYSFVSIPDVRI--GVAFGSGGSQSLPATELPGVSNWLARLINETL 269 (835)
Q Consensus 194 ~~~~~g-~~~i~v~~~~~~g~~Ri~p~~~~-~~v~~sf~~~P~vd~--~~~~~~~~~~~~~i~~iPgl~~~i~~~i~~~l 269 (835)
..+ .-.+.|+-.+.+|-+|+.-+-.. ..=+++|++.|.+.- ...+.+. -| ---|...|+..|..++
T Consensus 222 ---~~~kk~S~~iKl~~l~Gm~r~~~~r~py~hw~~sf~G~P~~e~di~s~~qg~------qL-Q~~I~q~i~~~ir~~~ 291 (1051)
T KOG3532|consen 222 ---IIAKKASLSVKITKLTGMVRVILSRQPYHHWTFSFVGQPIFETDINSQIQGH------QL-QRLIPQIIKEAIRRSL 291 (1051)
T ss_pred ---ccccCCceeEEEEEeccceeEEEEeccceeeeeeeccCchhhhhhHHHHHHH------HH-HHHhHHHHHHHHHHHH
Confidence 122 33566777889999999633321 123689999998643 3344332 11 0124455666666666
Q ss_pred hcceecCceEEEecCccc---c-c--------ccccccEEEEEEEecCCCCC
Q 003259 270 VKTLVEPRRRCYSLPAVD---L-R--------KKAVGGIVYVRVISASKLSR 309 (835)
Q Consensus 270 ~~~~v~P~~~~~~l~~~~---~-~--------~~~~~GvL~V~V~~A~~L~~ 309 (835)
...=-|||+-.=-.|..- . + .-...|++.|++.++..|+.
T Consensus 292 ~rKhT~pnyK~ry~pff~~~~~~a~~~~~s~~~i~~~G~~~V~~lE~srL~~ 343 (1051)
T KOG3532|consen 292 QRKHTWPNYKIRYRPFFPNPIFQASPPINSFTHIKMEGGIEVTVLECSRLKD 343 (1051)
T ss_pred HhhccCcchhhhccccccCcccccCcchhhhhheeccCceeEeehhhhhhhc
Confidence 666778886321112100 0 0 00134999999999888763
No 295
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=45.20 E-value=52 Score=32.75 Aligned_cols=55 Identities=7% Similarity=0.048 Sum_probs=41.0
Q ss_pred eeeeeccCCCCCCcccceeEEEEEcC---CceEEEEEEEeCCCCCC-----cceeEEEEEecc
Q 003259 349 LTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVK-----YDYLTSCEVKMK 403 (835)
Q Consensus 349 ~~~t~~i~~~~nP~W~etf~~~v~~~---~~~L~~~v~d~~~~~~k-----dd~LG~~~i~L~ 403 (835)
...|.+...+.+|.|+|++-+.+.-. ...|.|+.|+.+-...+ ...+|-+.+||-
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 35677778889999999999987653 46999999996542111 246899988873
No 296
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=44.56 E-value=64 Score=37.74 Aligned_cols=52 Identities=13% Similarity=0.298 Sum_probs=37.1
Q ss_pred CCCCcchHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHhhcCCcccccEEEEEEecCCC
Q 003259 96 ITPLEHCEWLNKLLMEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGST 154 (835)
Q Consensus 96 ~~~~E~~eWlN~~l~~~W~~~~~~~~~~~i~~~v~~~l~~~~P~~i~~i~~~~f~LG~~ 154 (835)
.++.-.+||.|-++..... +..+.+.+.+.++.+|.+..-.-.+ ..+.+|.+
T Consensus 91 ~~e~~~veW~Npf~~~if~---~~~~~~~~~~~~~~il~~~~~~~~~----~~~~i~e~ 142 (655)
T COG3887 91 FNETNKVEWVNPFASKIFN---KNEIGESLSELIPEILKQLARNDEK----QYIKINEK 142 (655)
T ss_pred EcCCCceEEecHHHHHhcC---hhhhhhhHHHHhHHHHHHHhcCCcc----eEEEEcce
Confidence 4677789999999999998 6777778888888888774321111 55666665
No 297
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=44.07 E-value=72 Score=33.07 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=19.9
Q ss_pred hhhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhhh
Q 003259 18 EQVVEFWKNLLEEKPLLPFVIPLVLLLWVFERWLFSFS 55 (835)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 55 (835)
+|..||+|+-+|..-+..+-+++.....++.-|..+++
T Consensus 106 RE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~ 143 (237)
T PF13748_consen 106 REFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLA 143 (237)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888877766433333344333333333334444
No 298
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=43.64 E-value=81 Score=31.57 Aligned_cols=54 Identities=9% Similarity=0.117 Sum_probs=40.7
Q ss_pred eEeeeeeecCCCCCeeeeEEEeecC-----CCcEEEEEEECCCC---------CCCCeEEEEEEEccc
Q 003259 651 LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNAL---------LASSSIGDCVVEYQR 704 (835)
Q Consensus 651 ~~~kT~v~~~t~nP~wne~f~f~v~-----~~~L~i~V~d~d~~---------~~d~~iG~~~i~l~~ 704 (835)
....|.|...+.+|.|+|++-+.++ ..-|.|+.++-.-- ..+..+|.+.+||-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 4678899999999999999988764 56799999886521 123568888888764
No 299
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=43.61 E-value=20 Score=43.38 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=54.5
Q ss_pred cccccccccccEEEEEEEecCCCCCCCCCCCCcccccccCCCCccccccCCCCcCeEEEEEec------ceeeeeccCCC
Q 003259 285 AVDLRKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDARPG 358 (835)
Q Consensus 285 ~~~~~~~~~~GvL~V~V~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~~~~dpyv~v~~g------~~~~t~~i~~~ 358 (835)
..|.+....-|.+.+.+++|..++... .-||+..+. ....|..+.+|
T Consensus 749 ddD~eSpl~ygflh~~vhsat~lkqs~---------------------------~lY~Td~v~e~~~~~s~~st~~iadT 801 (1112)
T KOG4269|consen 749 DDDDESPLLYGFLHVIVHSATGLKQSR---------------------------NLYCTDEVDEFGYFVSKASTRVIADT 801 (1112)
T ss_pred cccccCcccccceeeeecccccccccc---------------------------ceeeehhhhhhccccccccceeeecc
Confidence 344555555699999999999998553 236666664 23567778999
Q ss_pred CCCcccceeEEEEEcCCceEEEEEEEeCC
Q 003259 359 SDPRWDSMFNMVLHEETGTVRFNLYECIP 387 (835)
Q Consensus 359 ~nP~W~etf~~~v~~~~~~L~~~v~d~~~ 387 (835)
..|.||+.|.+.+-.. |.+++..|+.+-
T Consensus 802 ~~~~~npe~hv~~~~s-qS~r~~~~ek~~ 829 (1112)
T KOG4269|consen 802 AEPQWNPEKHVPVIES-QSSRLEKTEKST 829 (1112)
T ss_pred cCCCCChhcccchhhc-cccchhhhcccc
Confidence 9999999998876543 667777877653
No 300
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=40.77 E-value=19 Score=43.85 Aligned_cols=94 Identities=15% Similarity=0.256 Sum_probs=73.4
Q ss_pred CCCCCEEEEEECCe-EeeeeeecCC-CCCeeeeEEEeecC--CCcEEEEEEECCCCCCCCeEEEEEEEccccCCCCceee
Q 003259 638 GTSDPYVKVQYGDL-KKRTKVIFKT-LNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADK 713 (835)
Q Consensus 638 g~~DPyv~v~~~~~-~~kT~v~~~t-~nP~wne~f~f~v~--~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~ 713 (835)
...++|+++.+... ..+|....+. .+|.|.+.|..... ...+.+.+-+.+..|.-..+|.+.++...+..+.....
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~ 215 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGG 215 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccc
Confidence 34799999999764 5578888776 79999999987764 57789999998888766799999999999988888999
Q ss_pred EEecCC---C---CCcEEEEEEEE
Q 003259 714 WIPLQG---V---RKGEIHVLITR 731 (835)
Q Consensus 714 w~~L~~---~---~~G~i~l~l~~ 731 (835)
|+++-. . ++-.+.+.+.+
T Consensus 216 ~~~Il~~d~~~~~~~~~~~~~~~~ 239 (887)
T KOG1329|consen 216 WFPILDNDGKPHQKGSNESLRLGF 239 (887)
T ss_pred eeeeeccCCccccCCcccceEEee
Confidence 999832 1 22345555666
No 301
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=39.83 E-value=5.4 Score=46.04 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=81.6
Q ss_pred EEEEEEEEeecCCCCC----CCCCCCcEEEEEECCeEeecccc-CCCCCccceEEEEEeeCC--ceeEEEEEEEeccCCC
Q 003259 489 KINVTVVEGKDLMPKD----KSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIFGD 561 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~----~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~Wne~f~f~v~~~--~~~L~i~V~d~d~~~d 561 (835)
+...++..|.++++.- ..-..++++...++++.++|+.. .+.+|+|||. ++...+- ...+ ..
T Consensus 281 i~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l----------~~ 349 (975)
T KOG2419|consen 281 IALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYL----------GN 349 (975)
T ss_pred hHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHH----------hh
Confidence 4555666666653211 11246889999999999999999 9999999997 5442221 1112 45
Q ss_pred ceEEEEEEeccccccC----CeeeeEEecccCCCceEEEEEEEeecCCCCCCCCCCCCCcceEEEEEEEEeecCCcCC--
Q 003259 562 ENMGSARVNLEGLVEG----SVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD-- 635 (835)
Q Consensus 562 ~~IG~~~i~L~~l~~~----~~~~~w~~L~~~~~G~I~l~l~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d-- 635 (835)
.++|.+.+++.+-... ......+..++ . ...+.+.+..-...++++..
T Consensus 350 kiv~~~~~~lndS~A~f~vq~~~sn~~~~~p-E-------------------------~~~~sfnl~~~a~sn~~a~r~~ 403 (975)
T KOG2419|consen 350 KIVGYCELDLNDSYANFVVQRAKSNFFISEP-E-------------------------STCKSFNLLDPASSNLPALRNR 403 (975)
T ss_pred hccccccccccchhhhhhhhhhhccccccCc-c-------------------------ccceEEEeecCCcccchhhhhc
Confidence 5677777776662211 11111111111 1 11222222222222332211
Q ss_pred ---cCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEe
Q 003259 636 ---LRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF 672 (835)
Q Consensus 636 ---~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f 672 (835)
.+-..||+..+.+|..-+++.+-....+|.+++.-.+
T Consensus 404 ~S~T~~em~~~~~~~vG~~~~s~sie~~v~~~~c~~~~~~ 443 (975)
T KOG2419|consen 404 LSKTNYEMDPFIVIVVGSRFFSCSIEDPVETEECFAKRIL 443 (975)
T ss_pred cCccccccCchhHhhhhhHHhhhhhhccccchhhhhhhcc
Confidence 2346799999999887776666666777777664333
No 302
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=37.71 E-value=2.1e+02 Score=31.10 Aligned_cols=108 Identities=10% Similarity=0.115 Sum_probs=71.6
Q ss_pred CcceEEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEeeeeeecCCCCC--eeeeEEEeecC--CCcEEEEEEECCCCCC
Q 003259 616 SGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNP--QWHQTLEFPDD--GSPLTLHVRDHNALLA 691 (835)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP--~wne~f~f~v~--~~~L~i~V~d~d~~~~ 691 (835)
...-.|-|.|.+-.++.. ...-|+.+..|+...+|..+.-+..- .=+|.....+. +.+|.+.|+-... .+
T Consensus 55 HRkF~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkL-vk 128 (508)
T PTZ00447 55 YRTFYLLVKINEIFNINK-----YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKL-TK 128 (508)
T ss_pred cceeeEEEEehhhhcccc-----ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccc-cc
Confidence 344556677766655543 34678888899988888666443222 22345555554 6789999998764 45
Q ss_pred CCeEEEEEEEccc-c-CCCCceeeEEecC--CCCCcEEEEEE
Q 003259 692 SSSIGDCVVEYQR-L-PPNQMADKWIPLQ--GVRKGEIHVLI 729 (835)
Q Consensus 692 d~~iG~~~i~l~~-l-~~~~~~~~w~~L~--~~~~G~i~l~l 729 (835)
..-||.+.+.++. + ...-+..+||.+. |...+.|.+|+
T Consensus 129 k~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSF 170 (508)
T PTZ00447 129 KVHIGQIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSF 170 (508)
T ss_pred eeEEEEEEecccHHHHhccCCccceEEEecCCceeeeEEEEe
Confidence 6789999998873 2 3344678999994 45567777665
No 303
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=37.05 E-value=6.6e+02 Score=28.40 Aligned_cols=81 Identities=20% Similarity=0.312 Sum_probs=48.6
Q ss_pred CCcEEEEEECCeEeecccc---CCCCCcc------ceEEEEEee------CC------ceeEEEEEEEeccC-------C
Q 003259 509 CDPYVKLQYGKIVQRTRTA---HSPNHVW------NQKFELDEI------GG------GECLMVKCYNEEIF-------G 560 (835)
Q Consensus 509 ~dpyv~v~lg~~~~kT~~~---~t~nP~W------ne~f~f~v~------~~------~~~L~i~V~d~d~~-------~ 560 (835)
+..||+|++.+-..+|..+ ...++.- -..|.+.-. .+ ...|+|.||.-... +
T Consensus 36 spCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~ 115 (460)
T PF06219_consen 36 SPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNS 115 (460)
T ss_pred CCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccccc
Confidence 4669999998766666655 2222221 233444311 11 25799999985542 4
Q ss_pred CceEEEEEEeccccc-cCC---eeeeEEecccC
Q 003259 561 DENMGSARVNLEGLV-EGS---VRDIWVPLEKV 589 (835)
Q Consensus 561 d~~IG~~~i~L~~l~-~~~---~~~~w~~L~~~ 589 (835)
..+||.+.++|+--- .+. .+..|+.+.+.
T Consensus 116 ~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~ 148 (460)
T PF06219_consen 116 GKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKN 148 (460)
T ss_pred ceEEEEEEEEeccccccCCeeEEEccceecCCC
Confidence 579999999987321 111 35678887654
No 304
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.31 E-value=11 Score=44.43 Aligned_cols=91 Identities=11% Similarity=0.087 Sum_probs=60.0
Q ss_pred CCCCEEEEEECCeE-eeeeeecCCCCCeeeeEEEeecC-CCcEEEEEEECCCCCCCCeEEEEEEEccccC-CCCceeeEE
Q 003259 639 TSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLASSSIGDCVVEYQRLP-PNQMADKWI 715 (835)
Q Consensus 639 ~~DPyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~-~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~-~~~~~~~w~ 715 (835)
..|||+-|.+.... ..+.+...+..|.|+|+|...+. ...+.|.|+.......+.+.-.+.+-.+++. .......|.
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~ 106 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV 106 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeecCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence 45899998886543 35566778999999999999975 6789999998764433333333333222222 222356787
Q ss_pred ecCCCCCcEEEEEEEE
Q 003259 716 PLQGVRKGEIHVLITR 731 (835)
Q Consensus 716 ~L~~~~~G~i~l~l~~ 731 (835)
+++. .|.+...+.+
T Consensus 107 ~~~~--~g~~~~~~~~ 120 (694)
T KOG0694|consen 107 LIEE--LGTLLKPAAL 120 (694)
T ss_pred cccc--ccceeeeecc
Confidence 7664 4777777776
No 305
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=31.78 E-value=34 Score=41.79 Aligned_cols=97 Identities=14% Similarity=0.278 Sum_probs=73.5
Q ss_pred CCCCcEEEEEECC-eEeecccc-CC-CCCccceEEEEEeeCCceeEEEEEEEeccCC-CceEEEEEEeccccccCCeeee
Q 003259 507 GKCDPYVKLQYGK-IVQRTRTA-HS-PNHVWNQKFELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDI 582 (835)
Q Consensus 507 g~~dpyv~v~lg~-~~~kT~~~-~t-~nP~Wne~f~f~v~~~~~~L~i~V~d~d~~~-d~~IG~~~i~L~~l~~~~~~~~ 582 (835)
...++|+.+.+.+ ...+|... .. .+|.|.+.|+.........+.+.+-+.+..+ ...+|.+.++...+..+.....
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~ 215 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGG 215 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccc
Confidence 4479999999954 45677777 55 7899999999887777888999998888765 8899999999999998877777
Q ss_pred EEecccC------CCceEEEEEEEeec
Q 003259 583 WVPLEKV------NTGELRLQIEATRV 603 (835)
Q Consensus 583 w~~L~~~------~~G~I~l~l~~~~~ 603 (835)
|+++-.. +.-.+.+++.|.+.
T Consensus 216 ~~~Il~~d~~~~~~~~~~~~~~~~~~~ 242 (887)
T KOG1329|consen 216 WFPILDNDGKPHQKGSNESLRLGFTPM 242 (887)
T ss_pred eeeeeccCCccccCCcccceEEeeEee
Confidence 8876432 12234455555543
No 306
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=30.67 E-value=3.2e+02 Score=25.32 Aligned_cols=87 Identities=10% Similarity=0.166 Sum_probs=52.4
Q ss_pred eEEEEEEEEeecCCcCCcCCCCCCEEEEEECCeEe-eeeeecCCCCCeee-e--EEEeec--C-CCcEEEEEEECCC-CC
Q 003259 619 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKK-RTKVIFKTLNPQWH-Q--TLEFPD--D-GSPLTLHVRDHNA-LL 690 (835)
Q Consensus 619 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~-kT~v~~~t~nP~wn-e--~f~f~v--~-~~~L~i~V~d~d~-~~ 690 (835)
..|.++=+.-+++|.-+..+.+.||++|+-++... .|...... ..... . .+.++. . ...+.|.+++.+. ..
T Consensus 4 ~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~ 82 (134)
T PF10409_consen 4 RPLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSM 82 (134)
T ss_dssp -EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTEC
T ss_pred eeEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCccc
Confidence 34555555567778777777899999999988665 22222111 11111 1 223321 1 5678999998773 44
Q ss_pred CCCeEEEEEEEccccC
Q 003259 691 ASSSIGDCVVEYQRLP 706 (835)
Q Consensus 691 ~d~~iG~~~i~l~~l~ 706 (835)
.++.+.++.+.-.-+.
T Consensus 83 ~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 83 SKEKMFRFWFNTGFIE 98 (134)
T ss_dssp CCEEEEEEEEEGGGSB
T ss_pred ccCeEEEEEEeeeeee
Confidence 5677888888766554
No 307
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=30.32 E-value=4.3e+02 Score=25.84 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=51.0
Q ss_pred EEEEeecCCcCCcCCCCCCEEEEEE--C--------Ce-EeeeeeecCC-----CCCeeeeEEEeec--C----CCcEEE
Q 003259 624 VIVEARDLVAADLRGTSDPYVKVQY--G--------DL-KKRTKVIFKT-----LNPQWHQTLEFPD--D----GSPLTL 681 (835)
Q Consensus 624 ~v~~a~~L~~~d~~g~~DPyv~v~~--~--------~~-~~kT~v~~~t-----~nP~wne~f~f~v--~----~~~L~i 681 (835)
.|..|.+.. ..+-||+-.+ + .. ...|.+.+.+ -.-.||.-|.+.. . =+.|.+
T Consensus 7 ~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 7 EIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 456676543 3466888776 2 23 4667776533 3457887666553 1 278999
Q ss_pred EEEECCCCCCCCeEEEEEEEcc
Q 003259 682 HVRDHNALLASSSIGDCVVEYQ 703 (835)
Q Consensus 682 ~V~d~d~~~~d~~iG~~~i~l~ 703 (835)
+||..|.++++.+.|...+.+-
T Consensus 81 ~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 81 QVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEcccCCeEEeEEeEEEeC
Confidence 9999999999999998877664
No 308
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=25.12 E-value=5.5e+02 Score=23.71 Aligned_cols=87 Identities=14% Similarity=0.189 Sum_probs=50.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEe-ecccc-CCCCCccceEEEEEeeC--C-ceeEEEEEEEecc--CCC
Q 003259 489 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQ-RTRTA-HSPNHVWNQKFELDEIG--G-GECLMVKCYNEEI--FGD 561 (835)
Q Consensus 489 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~lg~~~~-kT~~~-~t~nP~Wne~f~f~v~~--~-~~~L~i~V~d~d~--~~d 561 (835)
.|.++-+.-.+.+.-+..+.+.||++|+-++... .|... ....-.=...+.+.+.. . ..-+.|++++.+. ..+
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~~ 84 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMSK 84 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTECCC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCccccc
Confidence 4555555556666666677899999999976544 44443 22111111222332221 1 4467889998773 267
Q ss_pred ceEEEEEEeccccc
Q 003259 562 ENMGSARVNLEGLV 575 (835)
Q Consensus 562 ~~IG~~~i~L~~l~ 575 (835)
+.+.++.+.-.-+.
T Consensus 85 ~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 85 EKMFRFWFNTGFIE 98 (134)
T ss_dssp EEEEEEEEEGGGSB
T ss_pred CeEEEEEEeeeeee
Confidence 77888888766655
No 309
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=23.60 E-value=20 Score=41.62 Aligned_cols=55 Identities=18% Similarity=0.144 Sum_probs=39.3
Q ss_pred eEEEEEEEEeecCCcC----CcCCCCCCEEEEEECCeEeeeeeecCCCCCeeeeEEEeec
Q 003259 619 GWIELVIVEARDLVAA----DLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPD 674 (835)
Q Consensus 619 g~L~v~v~~a~~L~~~----d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v 674 (835)
|..-.+++.|.+++.. ...-..+|++...++.+.++|+.-..+.+|+|||. .+.+
T Consensus 280 gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~ 338 (975)
T KOG2419|consen 280 GIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-ERED 338 (975)
T ss_pred hhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-cccc
Confidence 3333445555555321 12235689999999999999999999999999997 5554
No 310
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=21.93 E-value=1.1e+02 Score=34.55 Aligned_cols=37 Identities=19% Similarity=0.439 Sum_probs=28.0
Q ss_pred eEEEEEEEccc-cCCCCceeeEEecCCC-----CCcEEEEEEEE
Q 003259 694 SIGDCVVEYQR-LPPNQMADKWIPLQGV-----RKGEIHVLITR 731 (835)
Q Consensus 694 ~iG~~~i~l~~-l~~~~~~~~w~~L~~~-----~~G~i~l~l~~ 731 (835)
.+|.+.|+++. +..+...+.||++.+. ..|.+ +++.|
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~~~~l-lk~~~ 43 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVGEGLI-IKVSS 43 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcCcceE-EEEEe
Confidence 48999999999 6677788999999542 34655 56666
No 311
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=20.32 E-value=2.8e+02 Score=26.37 Aligned_cols=16 Identities=38% Similarity=0.318 Sum_probs=10.1
Q ss_pred CCCcchHHHHHHHHHH
Q 003259 97 TPLEHCEWLNKLLMEV 112 (835)
Q Consensus 97 ~~~E~~eWlN~~l~~~ 112 (835)
++.+.+.=+|.+|.++
T Consensus 65 ~~~~~~~~l~~LLKr~ 80 (146)
T PF14316_consen 65 DDAEWLAALNELLKRV 80 (146)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 4555666677777664
No 312
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=20.21 E-value=55 Score=22.96 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=18.7
Q ss_pred chhhhhcccceeeeehhhhHHHH
Q 003259 2 ARSRRKKGARSFALNVEQVVEFW 24 (835)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (835)
+-.--|.|..-|+||.+||++.+
T Consensus 10 ~~~~Qq~~pe~l~LtpEDAvEaL 32 (35)
T PF08383_consen 10 ANYQQQMNPEALGLTPEDAVEAL 32 (35)
T ss_pred ccchhhcChhhcCCCHHHHHHHH
Confidence 44456788899999999999876
Done!