Your job contains 1 sequence.
>003260
MASFSPNTPHLKLTSTSAAPPRLWGWTSLFTAHKQAKKKQSFQFKAVYTPGLSLSSPTSK
KPTQRREKNENETDDISILNERIRRDFGKREATRPVMDSEEADKYIQLVKEQQQKGLQKL
KGKKSGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKD
STVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGK
VAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTER
ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD
IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVK
QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEK
VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKF
AQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP
DKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFE
MLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWC
LMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKM
MIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003260
(835 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2078673 - symbol:AT3G02060 species:3702 "Arabi... 3053 3.6e-318 1
TIGR_CMR|CHY_0200 - symbol:CHY_0200 "transcription-repair... 1061 2.7e-107 1
TIGR_CMR|GSU_0017 - symbol:GSU_0017 "transcription-repair... 1059 4.4e-107 1
TIGR_CMR|BA_0052 - symbol:BA_0052 "transcription-repair c... 1027 4.0e-106 2
TIGR_CMR|ECH_0250 - symbol:ECH_0250 "transcription-repair... 1033 2.5e-104 1
TIGR_CMR|DET_1281 - symbol:DET_1281 "transcription-repair... 1016 1.6e-102 1
TIGR_CMR|SO_2255 - symbol:SO_2255 "transcription-repair c... 991 7.1e-100 1
UNIPROTKB|P30958 - symbol:mfd species:83333 "Escherichia ... 970 1.1e-99 2
TIGR_CMR|CBU_1148 - symbol:CBU_1148 "transcription-repair... 983 5.0e-99 1
UNIPROTKB|Q9KQW2 - symbol:VC1886 "Transcription-repair co... 979 1.3e-98 1
TIGR_CMR|VC_1886 - symbol:VC_1886 "transcription-repair c... 979 1.3e-98 1
TIGR_CMR|SPO_2074 - symbol:SPO_2074 "transcription-repair... 969 1.5e-97 1
TIGR_CMR|APH_0107 - symbol:APH_0107 "transcription-repair... 944 6.8e-95 1
UNIPROTKB|P64326 - symbol:mfd "Transcription-repair-coupl... 929 2.7e-93 1
TIGR_CMR|CJE_1228 - symbol:CJE_1228 "transcription-repair... 783 7.9e-78 1
TIGR_CMR|CHY_1468 - symbol:CHY_1468 "ATP-dependent DNA he... 638 1.8e-64 2
TIGR_CMR|CBU_0305 - symbol:CBU_0305 "ATP-dependent DNA he... 582 1.6e-56 1
UNIPROTKB|Q0C0Q6 - symbol:HNE_1987 "Putative ATP-dependen... 573 1.4e-55 1
TIGR_CMR|BA_3993 - symbol:BA_3993 "ATP-dependent DNA heli... 572 1.8e-55 1
TIGR_CMR|NSE_0690 - symbol:NSE_0690 "ATP-dependent DNA he... 568 4.8e-55 1
TIGR_CMR|DET_1268 - symbol:DET_1268 "ATP-dependent DNA he... 450 8.7e-54 2
TIGR_CMR|ECH_0062 - symbol:ECH_0062 "ATP-dependent DNA he... 553 1.9e-53 1
UNIPROTKB|P24230 - symbol:recG "RecG DNA helicase" specie... 550 3.8e-53 1
TIGR_CMR|SPO_1681 - symbol:SPO_1681 "ATP-dependent DNA he... 541 3.5e-52 1
TIGR_CMR|APH_1298 - symbol:APH_1298 "ATP-dependent DNA he... 539 5.6e-52 1
TIGR_CMR|SO_4364 - symbol:SO_4364 "ATP-dependent DNA heli... 534 1.9e-51 1
TIGR_CMR|GSU_1326 - symbol:GSU_1326 "ATP-dependent DNA he... 543 1.9e-51 1
UNIPROTKB|Q9KNM1 - symbol:VC_2711 "ATP-dependent DNA heli... 528 8.3e-51 1
TIGR_CMR|VC_2711 - symbol:VC_2711 "ATP-dependent DNA heli... 528 8.3e-51 1
TAIR|locus:2049541 - symbol:AT2G01440 species:3702 "Arabi... 313 2.7e-45 2
UNIPROTKB|P64322 - symbol:recG "ATP-dependent DNA helicas... 321 1.6e-39 2
TIGR_CMR|CJE_0514 - symbol:CJE_0514 "ATP-dependent DNA he... 399 1.6e-34 1
UNIPROTKB|P17888 - symbol:priA species:83333 "Escherichia... 148 2.6e-11 2
UNIPROTKB|Q3AFI3 - symbol:CHY_0229 "ATP-dependent RNA hel... 179 2.2e-10 1
TIGR_CMR|CHY_0229 - symbol:CHY_0229 "ATP-dependent RNA he... 179 2.2e-10 1
TIGR_CMR|BA_4006 - symbol:BA_4006 "primosomal protein N`"... 178 6.4e-09 3
FB|FBgn0036754 - symbol:CG5589 species:7227 "Drosophila m... 167 8.5e-09 1
UNIPROTKB|Q9KNQ3 - symbol:VC_2678 "Primosomal protein N`"... 143 2.7e-08 2
TIGR_CMR|VC_2678 - symbol:VC_2678 "primosomal protein N`"... 143 2.7e-08 2
TIGR_CMR|SPO_3127 - symbol:SPO_3127 "primosomal protein N... 135 4.8e-08 2
TIGR_CMR|VC_2564 - symbol:VC_2564 "ATP-dependent RNA heli... 156 8.6e-08 1
TIGR_CMR|SO_4122 - symbol:SO_4122 "primosomal protein N'"... 145 8.9e-08 2
TIGR_CMR|CJE_0782 - symbol:CJE_0782 "primosomal protein N... 137 1.5e-07 2
POMBASE|SPAC22F3.08c - symbol:rok1 "ATP-dependent RNA hel... 153 2.0e-07 1
TIGR_CMR|DET_0337 - symbol:DET_0337 "primosomal protein N... 156 2.1e-07 2
UNIPROTKB|Q485I3 - symbol:dbpA "ATP-dependent RNA helicas... 152 2.4e-07 1
TIGR_CMR|CPS_1540 - symbol:CPS_1540 "ATP-dependent RNA he... 152 2.4e-07 1
TIGR_CMR|CPS_1590 - symbol:CPS_1590 "ATP-dependent RNA he... 151 3.0e-07 1
TIGR_CMR|GSU_0189 - symbol:GSU_0189 "ATP-dependent RNA he... 151 3.0e-07 1
DICTYBASE|DDB_G0274325 - symbol:ddx52 "DEAD/DEAH box heli... 159 3.9e-07 2
GENEDB_PFALCIPARUM|PFE0215w - symbol:PFE0215w "ATP-depend... 152 5.1e-07 1
UNIPROTKB|Q8I457 - symbol:PFE0215w "ATP-dependent helicas... 152 5.1e-07 1
TIGR_CMR|CHY_1485 - symbol:CHY_1485 "primosomal protein N... 149 1.1e-06 2
UNIPROTKB|E1BUI4 - symbol:DDX51 "Uncharacterized protein"... 125 1.2e-06 2
TIGR_CMR|CBU_1815 - symbol:CBU_1815 "primosomal protein N... 143 1.9e-06 2
UNIPROTKB|Q9KS53 - symbol:VC1407 "ATP-dependent RNA helic... 140 3.7e-06 1
TIGR_CMR|VC_1407 - symbol:VC_1407 "ATP-dependent RNA heli... 140 3.7e-06 1
TIGR_CMR|GSU_0128 - symbol:GSU_0128 "primosomal protein n... 151 3.8e-06 2
UNIPROTKB|A8MTP9 - symbol:DDX52 "Probable ATP-dependent R... 140 5.4e-06 1
ZFIN|ZDB-GENE-060623-1 - symbol:ddx52 "DEAD (Asp-Glu-Ala-... 141 5.8e-06 1
UNIPROTKB|Q9Y2R4 - symbol:DDX52 "Probable ATP-dependent R... 140 7.5e-06 2
MGI|MGI:1925644 - symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) bo... 139 9.4e-06 1
TIGR_CMR|APH_0356 - symbol:APH_0356 "primosomal protein N... 119 9.5e-06 2
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN... 137 1.1e-05 1
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli... 136 1.1e-05 1
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli... 136 1.1e-05 1
UNIPROTKB|I3LJA0 - symbol:DDX52 "Uncharacterized protein"... 137 1.2e-05 1
UNIPROTKB|Q8N8A6 - symbol:DDX51 "ATP-dependent RNA helica... 117 1.3e-05 2
TAIR|locus:2147987 - symbol:UAP56a "homolog of human UAP5... 135 1.5e-05 1
SGD|S000003139 - symbol:ROK1 "RNA-dependent ATPase" speci... 124 1.5e-05 2
UNIPROTKB|A5D7C1 - symbol:DDX52 "Probable ATP-dependent R... 137 1.5e-05 1
UNIPROTKB|J9P4L6 - symbol:DDX52 "Uncharacterized protein"... 137 1.6e-05 1
UNIPROTKB|E2RB54 - symbol:DDX52 "Uncharacterized protein"... 137 1.6e-05 1
DICTYBASE|DDB_G0269932 - symbol:uap56 "ATP-dependent RNA ... 133 2.5e-05 1
UNIPROTKB|F1NQA6 - symbol:DDX52 "Uncharacterized protein"... 135 2.6e-05 1
UNIPROTKB|E1C4M1 - symbol:DDX52 "Uncharacterized protein"... 135 2.6e-05 1
UNIPROTKB|P0A9P6 - symbol:deaD "DeaD, DEAD-box RNA helica... 135 2.8e-05 1
UNIPROTKB|Q81X23 - symbol:comFA "ComF operon protein 1" s... 131 4.5e-05 1
TIGR_CMR|BA_5426 - symbol:BA_5426 "comF operon protein 1"... 131 4.5e-05 1
UNIPROTKB|F1MGC9 - symbol:DDX51 "Uncharacterized protein"... 115 5.1e-05 2
TIGR_CMR|SO_4034 - symbol:SO_4034 "ATP-dependent RNA heli... 132 5.7e-05 1
GENEDB_PFALCIPARUM|PF14_0655 - symbol:PF14_0655 "RNA heli... 129 6.0e-05 1
UNIPROTKB|Q8IKF0 - symbol:H45 "Helicase 45" species:36329... 129 6.0e-05 1
DICTYBASE|DDB_G0288501 - symbol:ddx42 "DEAD/DEAH box heli... 134 6.3e-05 1
WB|WBGene00019245 - symbol:sacy-1 species:6239 "Caenorhab... 131 7.5e-05 1
MGI|MGI:1916913 - symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) bo... 117 9.7e-05 3
WB|WBGene00011032 - symbol:R05D11.4 species:6239 "Caenorh... 133 9.9e-05 2
ASPGD|ASPL0000037981 - symbol:AN2932 species:162425 "Emer... 127 0.00010 1
RGD|621743 - symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box pol... 139 0.00010 2
FB|FBgn0001942 - symbol:eIF-4a "Eukaryotic initiation fac... 127 0.00010 1
UNIPROTKB|F1NTK9 - symbol:DDX54 "Uncharacterized protein"... 131 0.00011 1
UNIPROTKB|P96614 - symbol:cshA "DEAD-box ATP-dependent RN... 128 0.00011 1
RGD|1309580 - symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box po... 117 0.00012 3
UNIPROTKB|Q4K4K3 - symbol:dbpA "ATP-independent RNA helic... 127 0.00013 1
TAIR|locus:2148027 - symbol:UAP56b "homolog of human UAP5... 97 0.00015 2
MGI|MGI:1919240 - symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) bo... 130 0.00015 1
UNIPROTKB|Q81QF0 - symbol:BAS2301 "ATP-dependent RNA heli... 126 0.00016 1
TIGR_CMR|BA_2475 - symbol:BA_2475 "ATP-dependent RNA heli... 126 0.00016 1
UNIPROTKB|Q8EIE5 - symbol:dbpA "ATP-dependent RNA helicas... 126 0.00016 1
TIGR_CMR|SO_0897 - symbol:SO_0897 "ATP-dependent RNA heli... 126 0.00016 1
WARNING: Descriptions of 19 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2078673 [details] [associations]
symbol:AT3G02060 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006783 "heme biosynthetic process" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 Pfam:PF02559 GO:GO:0005524
EMBL:CP002686 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR003711 SMART:SM01058
SUPFAM:SSF141259 UniGene:At.18700 IPI:IPI00547719
RefSeq:NP_566160.1 ProteinModelPortal:F4JFJ3 SMR:F4JFJ3
PRIDE:F4JFJ3 EnsemblPlants:AT3G02060.1 GeneID:821294
KEGG:ath:AT3G02060 OMA:LAKQHYD ArrayExpress:F4JFJ3 Uniprot:F4JFJ3
Length = 823
Score = 3053 (1079.8 bits), Expect = 3.6e-318, P = 3.6e-318
Identities = 606/784 (77%), Positives = 666/784 (84%)
Query: 53 SLSSPTSKKPTQRREKNE-NETDDISILNERIRRDFGKREATRPVMDSEEADKYIQLVKE 111
SLS+ T+ KPT+ REK E E+D IS+LNERIRRD GKRE RP MDSEEA+KYI +VKE
Sbjct: 51 SLSA-TAAKPTRWREKPELAESDSISLLNERIRRDLGKRETARPAMDSEEAEKYIHMVKE 109
Query: 112 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSYKVDPYSLRSGDYXXXXXXXXXXXX 171
FSYKVDPYSL SGDY
Sbjct: 110 QQERGLQKLKGIRQGTKAAGDGA----------FSYKVDPYSLLSGDYVVHKKVGIGRFV 159
Query: 172 XXXXDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTA 231
DV KDS+ P+EYVFIEYADGMAKLP+KQASR+LYRYNLPNETKRPRTLS+LSDT+
Sbjct: 160 GIKFDVPKDSSEPLEYVFIEYADGMAKLPLKQASRLLYRYNLPNETKRPRTLSRLSDTSV 219
Query: 232 WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFL 291
WERRKTKGKVAIQKMVVDLMELYLHRL+QKR PYPKNP +A+FAAQFPY TPDQK+AFL
Sbjct: 220 WERRKTKGKVAIQKMVVDLMELYLHRLRQKRYPYPKNPIMADFAAQFPYNATPDQKQAFL 279
Query: 292 DVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVV 351
DVE+DLTERETPMDRLICGDVGFGKTEVALRAIFCVVS GKQAMVLAPTIVLAKQH+DV+
Sbjct: 280 DVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSTGKQAMVLAPTIVLAKQHYDVI 339
Query: 352 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVV 411
SERFS YP IKVGLLSRFQ+KAEKEE+L+MIK GHLNIIVGTHSLLGSRVVY+NLGLLVV
Sbjct: 340 SERFSLYPHIKVGLLSRFQTKAEKEEYLEMIKTGHLNIIVGTHSLLGSRVVYSNLGLLVV 399
Query: 412 DEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKT 471
DEEQRFGVKQKEKIASFK SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER+PIKT
Sbjct: 400 DEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERIPIKT 459
Query: 472 HLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSR 531
HLS+F KEKVI AIK ELDRGGQVFYVLPRIKGLEE MDFL++AFP +DIA+AHG+QYS+
Sbjct: 460 HLSSFRKEKVIEAIKNELDRGGQVFYVLPRIKGLEEVMDFLEEAFPDIDIAMAHGKQYSK 519
Query: 532 QLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK 591
QLEETME+FAQG IKILICTNIVESGLDIQNANTII+QDVQQFGLAQLYQLRGRVGRADK
Sbjct: 520 QLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADK 579
Query: 592 EAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVG 651
EAHAYLFYPDKSLLSDQ GQGFQLAEKDMGIRGFGTIFGEQQTGDVG
Sbjct: 580 EAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVG 639
Query: 652 NVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAE 711
NVG+DLFFEMLFESLSKV+E + SVPY V+IDININPRLPSEY+N+LENPME+++EAE
Sbjct: 640 NVGIDLFFEMLFESLSKVEELRIFSVPYDLVKIDININPRLPSEYVNYLENPMEIIHEAE 699
Query: 712 KAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKT 771
KAAE+D+W LMQFTE+LRRQYGKEPYSMEI+LKKLYVRRMAAD+G+ +IYASGKMV MKT
Sbjct: 700 KAAEKDMWSLMQFTENLRRQYGKEPYSMEIILKKLYVRRMAADLGVNRIYASGKMVVMKT 759
Query: 772 NMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAXXXXXXXXXXXXNWIFQCLAELYASLPA 831
NM+KKVFK++ DSMT +V+R+SL +EGDQI A NW+FQCL+EL+ASLPA
Sbjct: 760 NMSKKVFKLITDSMTCDVYRSSLIYEGDQIMAELLLELPREQLLNWMFQCLSELHASLPA 819
Query: 832 LIKY 835
LIKY
Sbjct: 820 LIKY 823
>TIGR_CMR|CHY_0200 [details] [associations]
symbol:CHY_0200 "transcription-repair coupling factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003684 GO:GO:0006281
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259 eggNOG:COG1197
KO:K03723 TIGRFAMs:TIGR00580 HOGENOM:HOG000216591
RefSeq:YP_359072.1 ProteinModelPortal:Q3AFL2 STRING:Q3AFL2
GeneID:3728597 KEGG:chy:CHY_0200 PATRIC:21273579 OMA:ERINMYK
BioCyc:CHYD246194:GJCN-201-MONOMER Uniprot:Q3AFL2
Length = 1160
Score = 1061 (378.5 bits), Expect = 2.7e-107, P = 2.7e-107
Identities = 226/596 (37%), Positives = 362/596 (60%)
Query: 186 EYVFIEY-ADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQ 244
+Y+ I Y + +P +Q + + E P LS+L + W+R K + K A++
Sbjct: 527 DYLVIAYQGEDRLYVPPEQVGNLQKYVGVDGE---PPKLSRLGGSD-WQRVKNRVKAAVR 582
Query: 245 KMVVDLMELYLHRLKQKRPPYPKNPAIA---EFAAQFPYEPTPDQKKAFLDVERDLTERE 301
+M L+ELY R+ +P + +P EF +FPYE TPDQ KA +V+RD+ E+
Sbjct: 583 EMAEGLLELYAKRMA--KPGFAFSPDTVWQKEFEERFPYEETPDQLKAIEEVKRDM-EKP 639
Query: 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDI 361
MDRL+CGDVG+GKTEVALRA F V GKQ VL PT +LA+QH++ ERFS YP +
Sbjct: 640 KVMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAVLTPTTLLAQQHYNTFKERFSGYP-V 698
Query: 362 KVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQ 421
++ LLSRFQ+ E++E + +K G ++I++GTH LL V + +LGL++VDEEQRFGV Q
Sbjct: 699 EIRLLSRFQTAREQKEIIKELKRGKVDIVIGTHRLLQDDVQFYDLGLMIVDEEQRFGVAQ 758
Query: 422 KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKV 481
KE++ +VDVLTL+ATPIPRTL++AL G RD S+++TPP R P++T++ +
Sbjct: 759 KERLKILTETVDVLTLTATPIPRTLHMALMGIRDLSVLNTPPENRFPVQTYVLEEDPFII 818
Query: 482 ISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFA 541
AI+ EL RGGQVF+V R+ ++E ++Q P +A+AHGQ QLE M +F
Sbjct: 819 RDAIRRELGRGGQVFFVHNRVSDIDEVAAWVQSLVPEAKVAVAHGQMKEEQLERVMLEFI 878
Query: 542 QGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPD 601
G +L+ T I+E+G+D+ N NT+I+++ +FGLAQLYQLRGRVGR+++ A+AYL Y
Sbjct: 879 SGKYDVLVSTTIIETGIDLPNVNTLIIKNADRFGLAQLYQLRGRVGRSNRIAYAYLMYEK 938
Query: 602 KSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEM 661
+L + G G +LA +D+ IRG G + G +Q G + VG D++ ++
Sbjct: 939 DKVLREAAEKRLAAIKEFTEFGSGLKLAMRDLEIRGAGNLLGPEQHGHIAAVGFDMYMKL 998
Query: 662 LFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCL 721
L E+++++ V S + Q+++N+ +P YI + +EM + +++ L
Sbjct: 999 LQETVAELKGQ-VTSEEVEP-QLELNLTAYIPESYIPDEKQKIEMYRRLSRT--RNLEDL 1054
Query: 722 MQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKV 777
+ L ++G+ P +E L++ + ++ +A+ + + I+ + + + ++ N ++
Sbjct: 1055 EDVVDELIDRFGEIPPEVENLIRLIKIKIVASKLKVKGIFQTDEELKIQFFPNPEI 1110
>TIGR_CMR|GSU_0017 [details] [associations]
symbol:GSU_0017 "transcription-repair coupling factor"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
GO:GO:0003684 GO:GO:0006281 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259 KO:K03723
OMA:QAYAYLM TIGRFAMs:TIGR00580 HOGENOM:HOG000216591
RefSeq:NP_951079.1 ProteinModelPortal:Q74H75 GeneID:2685756
KEGG:gsu:GSU0017 PATRIC:22022771 ProtClustDB:CLSK827589
BioCyc:GSUL243231:GH27-22-MONOMER Uniprot:Q74H75
Length = 1157
Score = 1059 (377.8 bits), Expect = 4.4e-107, P = 4.4e-107
Identities = 234/571 (40%), Positives = 346/571 (60%)
Query: 186 EYVFIEYADG-MAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQ 244
+++ +EYA G LPV + S ++ RY + +E PR + +L T+ WE+ K K + A+Q
Sbjct: 526 DFLLLEYAGGDKLYLPVDRLS-LVQRY-VGSEGIEPR-VDRLGGTS-WEKAKGKARAAVQ 581
Query: 245 KMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETP 303
+M +L+ +Y R L + P + EF A F YE T DQ A DV D+T P
Sbjct: 582 EMAEELLRIYAARQLHEGHRFSPPDDLYREFEASFAYEETSDQLAAIEDVIADMTSNR-P 640
Query: 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKV 363
MDRL+CGDVG+GKTEVA+R F V GKQ VL PT VLA+QH + R YP + +
Sbjct: 641 MDRLVCGDVGYGKTEVAMRGAFKAVMDGKQVAVLVPTTVLAQQHLETFRARLGAYP-VTI 699
Query: 364 GLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE 423
++SRF++ E+++ L+ +K G +++I+GTH LL + V + +LGLL+VDEEQRFGV KE
Sbjct: 700 EMVSRFRTPKEQKDILERVKKGTVDVIIGTHRLLQNDVTFKDLGLLIVDEEQRFGVTHKE 759
Query: 424 KIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVIS 483
K+ +K +VD+LTL+ATPIPRTLY++L G RD S+I TPP +RL +KT ++ S E +
Sbjct: 760 KLKKYKAAVDILTLTATPIPRTLYMSLMGIRDLSIIDTPPVDRLAVKTFVARTSDELIRE 819
Query: 484 AIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG 543
A+ EL RGGQVF+V R++ + + L++ P IA+ HGQ +LE+ M F G
Sbjct: 820 AVLRELRRGGQVFFVHNRVQSIGAWYEHLRRIVPEAKIAVGHGQMDEGELEKVMLGFMHG 879
Query: 544 AIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603
+L+CT I+ESGLDI +ANT+IV FGLAQLYQLRGRVGR+ + A+AYL P +
Sbjct: 880 ETNLLLCTTIIESGLDIPSANTLIVDRADTFGLAQLYQLRGRVGRSRQRAYAYLLIPGEG 939
Query: 604 LLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLF 663
+S G GF+LA D+ IRG G + G +Q+G++ VG DL+ E+L
Sbjct: 940 AISSDARERLRIIQELNELGAGFRLATHDLEIRGAGDLLGAKQSGNIAAVGFDLYTELLE 999
Query: 664 ESLSKVDEHCVISVPYKSVQIDININ-PR-LPSEYINHLENPMEMVNEAEKA-AEQDIWC 720
E++ K+ P + V+ +IN+ P +P +Y+ + + + +A AE+++
Sbjct: 1000 EAVQKLKGE----EPVERVEPEINLRVPAFIPEDYVREPNQRLVIYKKLTQATAEEEVGE 1055
Query: 721 LMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
+M E L ++G P + LL + +R M
Sbjct: 1056 VM---EELVDRFGTLPLAASYLLDVMKLRIM 1083
>TIGR_CMR|BA_0052 [details] [associations]
symbol:BA_0052 "transcription-repair coupling factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006281 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259
KO:K03723 TIGRFAMs:TIGR00580 HOGENOM:HOG000216591 OMA:ITEHEIY
RefSeq:NP_842621.1 RefSeq:YP_016655.1 RefSeq:YP_026339.1
HSSP:Q9WY48 ProteinModelPortal:Q81VY7 IntAct:Q81VY7 DNASU:1084914
EnsemblBacteria:EBBACT00000010195 EnsemblBacteria:EBBACT00000018477
EnsemblBacteria:EBBACT00000022406 GeneID:1084914 GeneID:2816263
GeneID:2851421 KEGG:ban:BA_0052 KEGG:bar:GBAA_0052 KEGG:bat:BAS0052
ProtClustDB:CLSK872606 BioCyc:BANT260799:GJAJ-59-MONOMER
BioCyc:BANT261594:GJ7F-61-MONOMER Uniprot:Q81VY7
Length = 1176
Score = 1027 (366.6 bits), Expect = 4.0e-106, Sum P(2) = 4.0e-106
Identities = 218/571 (38%), Positives = 347/571 (60%)
Query: 186 EYVFIEYADGMAKL--PVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAI 243
+Y+ I+Y G KL P++Q ++ +Y + +E K P+ KL W++ KTK + ++
Sbjct: 530 DYLNIKY-QGNDKLYVPIEQIDQV-QKY-VGSEGKDPKVY-KLGGND-WKKVKTKVEKSV 584
Query: 244 QKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERET 302
Q + DL++LY R K Y P EF + FPY+ T DQ ++ ++++D+ ER
Sbjct: 585 QDIADDLIKLYAEREASKGYAYTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGR 643
Query: 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIK 362
PMDRL+CGDVG+GKTEVA+RA F + KQ +L PT +LA+QH++ + ERF YP I
Sbjct: 644 PMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-IN 702
Query: 363 VGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK 422
+GLLSRF+++ ++ E + +K G ++I++GTH +L V Y +LGLL++DEEQRFGV K
Sbjct: 703 IGLLSRFRTRKQQNETIKGLKDGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHK 762
Query: 423 EKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVI 482
EKI K +VDVLTL+ATPIPRTL++++ G RD S+I TPP R P++T++ ++ +
Sbjct: 763 EKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMR 822
Query: 483 SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQ 542
AI+ EL RGGQV+++ R++ +E D + P + AHG+ +LE M F +
Sbjct: 823 EAIERELARGGQVYFLYNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLE 882
Query: 543 GAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602
G +L+ T I+E+G+DI N NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y
Sbjct: 883 GQHDVLVSTTIIETGVDIPNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRD 942
Query: 603 SLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML 662
+LS+ G GF++A +D+ IRG G + G +Q G + +VG DL+ +ML
Sbjct: 943 KVLSEVAEKRLQAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQML 1002
Query: 663 FESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCL 721
+++ + + +V+ID+ ++ LP YI+ + + M + +A +DI
Sbjct: 1003 KDAIEQRRGTDGVENTV-NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSAIEDI--- 1058
Query: 722 MQFTESLRRQYGKEPYSMEILLKKLYVRRMA 752
+ E + ++G P + LL+ ++ +A
Sbjct: 1059 EELQEEMIDRFGDYPQEVGYLLQIANIKVLA 1089
Score = 43 (20.2 bits), Expect = 4.0e-106, Sum P(2) = 4.0e-106
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 74 DDISILNERIRRDFGKREATRPVMDSEEADKYIQLVKE 111
D + IL+E + + T ++SEEA+ YI L+ E
Sbjct: 304 DGVVILDE-----ISRIQETASHLESEEAEWYISLLGE 336
>TIGR_CMR|ECH_0250 [details] [associations]
symbol:ECH_0250 "transcription-repair coupling factor"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003684 GO:GO:0006281
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259 eggNOG:COG1197
HOGENOM:HOG000216592 KO:K03723 TIGRFAMs:TIGR00580
RefSeq:YP_507071.1 ProteinModelPortal:Q2GHL2 STRING:Q2GHL2
GeneID:3927985 KEGG:ech:ECH_0250 PATRIC:20576019 OMA:DHININI
ProtClustDB:CLSK749334 BioCyc:ECHA205920:GJNR-250-MONOMER
Uniprot:Q2GHL2
Length = 1134
Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
Identities = 229/617 (37%), Positives = 365/617 (59%)
Query: 186 EYVFIEYADG-MAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQ 244
+++ IEY + LPV+ + ++ +Y N TL KL +T+W++RKTK K I+
Sbjct: 502 DFIKIEYYNNDKLFLPVENIN-LISKYGQQNVNV---TLDKLG-STSWQQRKTKIKNHIK 556
Query: 245 KMVVDLMELYL-HRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETP 303
K+ +L+ + RL + +P + F +F Y T DQ +A D+E DL+ +
Sbjct: 557 KIAKELLTIEAARRLSTGKSFFP-DENYKHFCNEFSYTETEDQLQAIKDMEHDLSSGKI- 614
Query: 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKV 363
M+RLICGDVGFGKTE+ALRA F V S Q ++ PT +L +QHF V +ERF K+P+IK+
Sbjct: 615 MNRLICGDVGFGKTEIALRAAFLVASQNYQVAIIVPTTLLCRQHFIVFTERFKKFPNIKI 674
Query: 364 GLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE 423
LS+ +++E ++ + + G ++II+GTH++L V + NL LL++DEEQ+FGVKQKE
Sbjct: 675 KQLSKIVARSEIKKTKESLSCGQVHIIIGTHAILAQDVTFANLSLLIIDEEQQFGVKQKE 734
Query: 424 KIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVIS 483
+ K +V V++LSATPIPRTLY++L G +D SLI TPP RL + T+ + + + +
Sbjct: 735 LLKKIKTNVHVISLSATPIPRTLYMSLCGIKDLSLIKTPPKNRLAVTTYTTYYEETIIKD 794
Query: 484 AIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG 543
AI E +RGG+VFYV P+I ++ D +++ P + + AHGQ QL+ M F G
Sbjct: 795 AIIREHNRGGRVFYVCPQISNIKSISDKIRKLVPEIKMNTAHGQLSPTQLDTIMNDFFDG 854
Query: 544 AIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603
IL+ T+I+E GLDI ANTII+ + FGLAQLYQL+GRVGR+ + AY +K+
Sbjct: 855 KFTILLTTSIIECGLDIPFANTIIIHNADMFGLAQLYQLKGRVGRSSTKGFAYFILSEKA 914
Query: 604 LLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLF 663
+++ GF L+ DM IRGFG + GE+Q+G++ ++G++L+ +ML
Sbjct: 915 --TNKSAIKLEIIQSIDSINSGFNLSLHDMDIRGFGNLVGEEQSGNIKDIGIELYQQMLE 972
Query: 664 ESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLM 722
E L+ E+ + I+IN+N R+P YI + M + + ++DI
Sbjct: 973 EELNIYSEY---PKDLDHINININVNIRIPEHYIQDIGLRMRVYKKIGSLKTKEDI---D 1026
Query: 723 QFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMK----TNMNKKVF 778
+ L ++GK P +E LL +Y++++ A+IGI ++ + +K T + +K+
Sbjct: 1027 NYYIELTNKFGKLPNEVENLLNTIYIKQLCANIGIYEVEQIKNSILLKIDSNTTLKQKIL 1086
Query: 779 KMMIDS-MTSEVHRNSL 794
I++ +T ++ NS+
Sbjct: 1087 NYFINNPLTFKIQNNSI 1103
>TIGR_CMR|DET_1281 [details] [associations]
symbol:DET_1281 "transcription-repair coupling factor"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR001650 InterPro:IPR004576 InterPro:IPR005118
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF03461
PROSITE:PS51194 SMART:SM00490 SMART:SM00982 Pfam:PF02559
GO:GO:0005524 GO:GO:0003684 GO:GO:0006281 EMBL:CP000027
GenomeReviews:CP000027_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR003711 SMART:SM01058
SUPFAM:SSF141259 eggNOG:COG1197 KO:K03723 TIGRFAMs:TIGR00580
HOGENOM:HOG000216591 RefSeq:YP_181993.1 ProteinModelPortal:Q3Z706
STRING:Q3Z706 GeneID:3229394 KEGG:det:DET1281 PATRIC:21609591
OMA:ITEHEIY ProtClustDB:CLSK2459055
BioCyc:DETH243164:GJNF-1282-MONOMER Uniprot:Q3Z706
Length = 1148
Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
Identities = 233/627 (37%), Positives = 363/627 (57%)
Query: 186 EYVFIEYADG-MAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQ 244
EY+ + YA G +P Q R+ +E P +L +L T W+R K K + +
Sbjct: 514 EYLILNYAGGDKLYVPTDQMDRVNRFIGSGDE---PPSLHRLG-TQEWQRAKEKASESAE 569
Query: 245 KMVVDLMELYLHRLKQKRPPYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETP 303
+ +L+++Y R P+ + E A FPY TPDQ KA D++ D+ E P
Sbjct: 570 ETARELLDIYAKRKMASGYPFSTDTVWQQEMEASFPYLETPDQLKALYDIKADM-ENPRP 628
Query: 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKV 363
MDRLI GDVG+GKTEVA+RA F V GKQ VL PT VLA+QH+ ER + +P +K+
Sbjct: 629 MDRLILGDVGYGKTEVAIRAAFKAVMDGKQVAVLVPTTVLAQQHYTTFRERLATFP-VKI 687
Query: 364 GLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE 423
+LSRF S +E++ ++ ++ G ++I +GTH L+ + + + +LGL+++DEEQRFGV KE
Sbjct: 688 EVLSRFCSPSEQKTTVENLERGEVDICIGTHRLIQADITFKDLGLVIIDEEQRFGVAHKE 747
Query: 424 KIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVIS 483
+ VDVLTLSATPIPRTL+++L G RD S+I TPP ERLPIKT ++AF + +
Sbjct: 748 FFKKLRAQVDVLTLSATPIPRTLHMSLVGVRDMSIIETPPGERLPIKTVVAAFDERLIRE 807
Query: 484 AIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG 543
AI E++R GQVF+V R+ G+ + +QQ P I IAHGQ +L M F +
Sbjct: 808 AILREMERNGQVFFVNNRVMGINLLAERIQQLVPEARIGIAHGQMAEEKLAAVMADFVRH 867
Query: 544 AIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP-DK 602
+ +L+CT I+ESG+D+ NANT+I+ +FGL QLYQLRGRVGR+ + A+AY Y DK
Sbjct: 868 ELDVLVCTTIIESGVDVPNANTLIINRADRFGLTQLYQLRGRVGRSSQLAYAYFLYEKDK 927
Query: 603 SLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML 662
L SD G G+ +A KD+ IRG GT+ G +Q+G + +VG +L+ +ML
Sbjct: 928 RLTSD-AEKRLKTIYEAAELGAGYGIAMKDLEIRGAGTLLGVKQSGYINSVGFNLYTQML 986
Query: 663 FES----------LSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEK 712
E+ LSK +E + ++P + ++D+ ++ +P YI L+ + + +
Sbjct: 987 SEAVAGLKAKGSGLSK-EEIRIQNMP--APKLDLPLDAFIPEYYIQDLDLRLSIYQQL-- 1041
Query: 713 AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTN 772
+A ++ +++ + L ++G+ P +E LL L +R +A + I G + ++
Sbjct: 1042 SAITNLAGVLEKEKELADRFGQIPPELENLLYSLRLRLLAKKAHVDTIVTEGSQIVVRML 1101
Query: 773 MNKKVFKMMIDSMTSEV--HRNSLTFE 797
+ K +++ + + V RN ++ +
Sbjct: 1102 GGLIINKTLLEPLRAGVLVGRNQVSVQ 1128
>TIGR_CMR|SO_2255 [details] [associations]
symbol:SO_2255 "transcription-repair coupling factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=ISS]
InterPro:IPR001650 InterPro:IPR004576 InterPro:IPR005118
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF03461
PROSITE:PS51194 SMART:SM00490 SMART:SM00982 Pfam:PF02559
GO:GO:0005524 GO:GO:0003684 GO:GO:0006281 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR003711 SMART:SM01058
SUPFAM:SSF141259 HOGENOM:HOG000216592 KO:K03723 OMA:QAYAYLM
TIGRFAMs:TIGR00580 HSSP:Q9WY48 RefSeq:NP_717851.1
ProteinModelPortal:Q8EEV8 GeneID:1169985 KEGG:son:SO_2255
PATRIC:23524129 ProtClustDB:CLSK906653 Uniprot:Q8EEV8
Length = 1164
Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
Identities = 214/587 (36%), Positives = 342/587 (58%)
Query: 186 EYVFIEYADGMAKLPVKQAS-RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQ 244
EY+ +EY+ G KL V ++ ++ RY++ + + L+KL + T W + K K I+
Sbjct: 517 EYLQLEYSGG-DKLYVPVSNLHLISRYSVGADGETH--LNKLGNDT-WAKAKNKAIEKIR 572
Query: 245 KMVVDLMELYLHRLKQKRPPYP---KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERE 301
+ +L+++Y R Q RP + A+FA FP+E T DQ+ A V D+ +
Sbjct: 573 DVAAELLDVYARR--QARPGESCEINDEEYAQFAQGFPFEETVDQESAIHAVLADM-QSP 629
Query: 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDI 361
T MDRL+CGDVGFGKTEVA+RA F V+ GKQ +VL PT +LA+QH++ +RF+ +P +
Sbjct: 630 TAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVVVLVPTTLLAQQHYENFKDRFADWP-V 688
Query: 362 KVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQ 421
+ ++SRF++ E+ + L ++ G ++I++GTH LL S + NLGLL++DEE RFGV+Q
Sbjct: 689 VIEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHKLLQSEAKFENLGLLIIDEEHRFGVRQ 748
Query: 422 KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKV 481
KEKI + + +VD+LTL+ATPIPRTL +A++G RD S+I+TPP +RL +KT + V
Sbjct: 749 KEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRESDPATV 808
Query: 482 ISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFA 541
AI E+ RGGQV+Y+ ++ +E+ + P + +AHGQ R LE M F
Sbjct: 809 REAILREILRGGQVYYLHNNVETIEKCAQDISTLLPEARVVVAHGQMRERDLERVMSDFY 868
Query: 542 QGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPD 601
+L+CT I+E+G+D+ +ANTII++ FGLAQL+QLRGRVGR+ +A+AYL P
Sbjct: 869 HQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLAQLHQLRGRVGRSHHQAYAYLMTPH 928
Query: 602 KSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEM 661
++ G GF LA +D+ IRG G + G++Q+G + +G L+ EM
Sbjct: 929 PKRMTTDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEM 988
Query: 662 L---FESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDI 718
L ++L + E + + + ++++ I LP +Y+ + + + ++
Sbjct: 989 LESAVKALKQGKEPSLAQMLNQQCEMELRIPALLPEDYVGDVNIRLSLYKRIASCDSEE- 1047
Query: 719 WCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 765
L + L ++G P + + L++ + A +G TKI K
Sbjct: 1048 -ALDELKVELIDRFGLLPDATKNLMEMTLYKHQATRLGATKIEVHAK 1093
>UNIPROTKB|P30958 [details] [associations]
symbol:mfd species:83333 "Escherichia coli K-12"
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006974 "response
to DNA damage stimulus" evidence=IDA] [GO:0000716
"transcription-coupled nucleotide-excision repair, DNA damage
recognition" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004576
InterPro:IPR005118 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF03461 PROSITE:PS51194 SMART:SM00490 SMART:SM00982
Pfam:PF02559 GO:GO:0005524 GO:GO:0006355 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003684 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259
PIR:G64855 RefSeq:NP_415632.1 RefSeq:YP_489382.1 PDB:2B2N PDB:2EYQ
PDB:3HJH PDB:4DFC PDBsum:2B2N PDBsum:2EYQ PDBsum:3HJH PDBsum:4DFC
ProteinModelPortal:P30958 SMR:P30958 DIP:DIP-10199N IntAct:P30958
MINT:MINT-1231460 PaxDb:P30958 PRIDE:P30958
EnsemblBacteria:EBESCT00000004999 EnsemblBacteria:EBESCT00000005000
EnsemblBacteria:EBESCT00000014442 GeneID:12931092 GeneID:945681
KEGG:ecj:Y75_p1084 KEGG:eco:b1114 PATRIC:32117471 EchoBASE:EB1576
EcoGene:EG11619 eggNOG:COG1197 HOGENOM:HOG000216592 KO:K03723
OMA:QAYAYLM ProtClustDB:PRK10689 BioCyc:EcoCyc:EG11619-MONOMER
BioCyc:ECOL316407:JW1100-MONOMER EvolutionaryTrace:P30958
Genevestigator:P30958 GO:GO:0009380 GO:GO:0000716
TIGRFAMs:TIGR00580 Uniprot:P30958
Length = 1148
Score = 970 (346.5 bits), Expect = 1.1e-99, Sum P(2) = 1.1e-99
Identities = 214/585 (36%), Positives = 333/585 (56%)
Query: 186 EYVFIEYADGMAKLPVKQAS-RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQ 244
EY+ + YA+ AKL V +S ++ RY E P L KL AW R + K ++
Sbjct: 507 EYLMLTYAND-AKLYVPVSSLHLISRYAGGAEENAP--LHKLGGD-AWSRARQKAAEKVR 562
Query: 245 KMVVDLMELYLHRLKQKRPPYPKNPAIAE-FAAQFPYEPTPDQKKAFLDVERDLTERETP 303
+ +L+++Y R ++ + + + F FP+E TPDQ +A V D+ +
Sbjct: 563 DVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQ-PLA 621
Query: 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKV 363
MDRL+CGDVGFGKTEVA+RA F V KQ VL PT +LA+QH+D +RF+ +P +++
Sbjct: 622 MDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRI 680
Query: 364 GLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE 423
++SRF+S E+ + L + G ++I++GTH LL S V + +LGLL+VDEE RFGV+ KE
Sbjct: 681 EMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKE 740
Query: 424 KIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVIS 483
+I + + +VD+LTL+ATPIPRTL +A++G RD S+I+TPP RL +KT + + V
Sbjct: 741 RIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVRE 800
Query: 484 AIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG 543
AI E+ RGGQV+Y+ ++ +++ + L + P IAI HGQ R+LE M F
Sbjct: 801 AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ 860
Query: 544 AIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603
+L+CT I+E+G+DI ANTII++ FGLAQL+QLRGRVGR+ +A+A+L P
Sbjct: 861 RFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 920
Query: 604 LLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML- 662
++ G GF LA D+ IRG G + GE+Q+G + +G L+ E+L
Sbjct: 921 AMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLE 980
Query: 663 --FESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWC 720
++L E + + + ++++ + LP ++I + + A ++
Sbjct: 981 NAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENE-- 1038
Query: 721 LMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 765
L + L ++G P LL +R+ A +GI K+ + K
Sbjct: 1039 LEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK 1083
Score = 39 (18.8 bits), Expect = 1.1e-99, Sum P(2) = 1.1e-99
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 209 YRYNLPNETKRPRTLSKLS 227
YRY LP + R L +L+
Sbjct: 5 YRYTLPVKAGEQRLLGELT 23
>TIGR_CMR|CBU_1148 [details] [associations]
symbol:CBU_1148 "transcription-repair coupling factor"
species:227377 "Coxiella burnetii RSA 493" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
GO:GO:0003684 GO:GO:0006281 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259
HOGENOM:HOG000216592 KO:K03723 OMA:QAYAYLM TIGRFAMs:TIGR00580
HSSP:Q9WY48 RefSeq:NP_820146.1 ProteinModelPortal:Q83CG9
GeneID:1209050 KEGG:cbu:CBU_1148 PATRIC:17931027
ProtClustDB:CLSK914576 BioCyc:CBUR227377:GJ7S-1138-MONOMER
Uniprot:Q83CG9
Length = 1157
Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
Identities = 227/593 (38%), Positives = 339/593 (57%)
Query: 179 KDSTVPIEYVFIEYADGMAKLPVKQASRMLY-RYNLPNETKRPRTLSKLSDTTAWERRKT 237
K S EY+ ++YAD K+ V +S L RY + + P L KL + WE+ K
Sbjct: 514 KTSDQEAEYLTLQYADN-DKIYVPVSSLYLISRYAGADASHAP--LQKLG-SKQWEKIKE 569
Query: 238 KGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERD 296
K + I+ + +L+++Y R + + F FP+E TPDQ A DV D
Sbjct: 570 KTQKHIRDVAAELLDIYSRRQAATGFTFSIPEKEYSLFRQAFPFEETPDQSAAINDVIVD 629
Query: 297 LTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFS 356
++ + + MDRLICGDVGFGKTEVA++A F V KQ VL PT +LA+QHF +RF+
Sbjct: 630 MSSKRS-MDRLICGDVGFGKTEVAMQAAFIAVQNNKQVAVLVPTTLLAEQHFYNFQDRFA 688
Query: 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQR 416
+P +++ +SR +++ ++++ + G ++II+GTH LL + + +LGLL+VDEE R
Sbjct: 689 DWP-VRIAAISRLRTQKQRQQITQELAEGKIDIIIGTHKLLSKDIRFKDLGLLIVDEEHR 747
Query: 417 FGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAF 476
FGV QKE+I S + VD+LTL+ATPIPRTL ++L+G RD SLI+TPP +RL +KT + +
Sbjct: 748 FGVTQKERIKSLRAHVDILTLTATPIPRTLNMSLSGIRDLSLITTPPAKRLSVKTFVHDY 807
Query: 477 SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEET 536
S + AI E RGGQV+++ + L + L+ P +AIAHGQ R LE
Sbjct: 808 SPVLIREAILRENLRGGQVYFLHNDVATLAATAEKLRTIIPEARLAIAHGQMRERDLERV 867
Query: 537 MEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAY 596
M F +L+CT I+ESG+DI ANTII+ +FGLAQL+QLRGRVGR+ +A+AY
Sbjct: 868 MSDFYHQKYNLLVCTTIIESGIDIPTANTIIINRADRFGLAQLHQLRGRVGRSHHQAYAY 927
Query: 597 LFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVD 656
L PD+ L+ G GF LA D+ IRG G + G +Q+G + ++G
Sbjct: 928 LLIPDQEALTADAEKRLSAISQLDDLGVGFNLATHDLEIRGAGELLGVEQSGQIHDIGFS 987
Query: 657 LFFEMLFESLS--KVDEHCVISVPYKSV-QIDININPRLPSEYINHLENPMEMVNE-AEK 712
L+ E+L E++S K P +V +ID+ I LP +Y+ + + + A
Sbjct: 988 LYLELLEEAVSALKAGREPQFEKPLHAVSEIDLGITTLLPEDYVPDVNARLILYKRLANC 1047
Query: 713 AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 765
+++I L E L ++G P + + LL+ +R +A ++GI KI K
Sbjct: 1048 KNKREIQALK---EELIDRFGPLPPAAQHLLQSAELRLIANELGIQKINIGSK 1097
>UNIPROTKB|Q9KQW2 [details] [associations]
symbol:VC1886 "Transcription-repair coupling factor"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
GO:GO:0003684 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0016887
GO:GO:0003690 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259
KO:K03723 OMA:QAYAYLM TIGRFAMs:TIGR00580 HSSP:Q9WY48 EMBL:AE004264
PIR:E82144 RefSeq:NP_231520.1 ProteinModelPortal:Q9KQW2
DNASU:2613640 GeneID:2613640 KEGG:vch:VC1886 PATRIC:20082814
ProtClustDB:CLSK874583 Uniprot:Q9KQW2
Length = 1155
Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
Identities = 223/583 (38%), Positives = 337/583 (57%)
Query: 186 EYVFIEYADGMAKLPVKQAS-RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQ 244
EYV +EY + AKL V +S ++ RY+ + L KL AW + + K ++
Sbjct: 512 EYVMLEYQNE-AKLYVPVSSLNLISRYS--GGAEEAAQLHKLGGE-AWVKARRKAAEKVR 567
Query: 245 KMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETP 303
+ +L+++Y R +K + A F A FP+E T DQ A V D+ + +
Sbjct: 568 DVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKA- 626
Query: 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKV 363
MDRL+CGDVGFGKTEVA+RA F GKQ VL PT +LA+QHF+ +RF+ P I+V
Sbjct: 627 MDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLP-IRV 685
Query: 364 GLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE 423
+LSRF+S E+++ L + G ++I+VGTH LL S + + +LGLL+VDEE RFGV+QKE
Sbjct: 686 EVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKE 745
Query: 424 KIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVI- 482
K+ + + VD+LTL+ATPIPRTL +A++G RD S+I+TPP RL IKT + S++ VI
Sbjct: 746 KVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQ-SEDSVIR 804
Query: 483 SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQ 542
A+ E+ RGGQV+++ +++ +++ L++ P I +AHGQ R+LE+ M F
Sbjct: 805 EAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRERELEKVMNDFYH 864
Query: 543 GAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602
+L+CT I+E+G+D+ ANTII+ GLAQL+QLRGRVGR+ +A+AYL P
Sbjct: 865 QRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPP 924
Query: 603 SLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML 662
++ G GF LA D+ IRG G + GE+Q+G + +VG L+ EML
Sbjct: 925 KAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGFTLYMEML 984
Query: 663 ---FESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIW 719
E+L E + + + ++++ + LP EYI + + M + A +D
Sbjct: 985 EQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYKQIASVASKDE- 1043
Query: 720 CLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYA 762
L + L ++GK P + LL ++ A + + KI A
Sbjct: 1044 -LAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEA 1085
>TIGR_CMR|VC_1886 [details] [associations]
symbol:VC_1886 "transcription-repair coupling factor"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
GO:GO:0003684 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0016887
GO:GO:0003690 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259
KO:K03723 OMA:QAYAYLM TIGRFAMs:TIGR00580 HSSP:Q9WY48 EMBL:AE004264
PIR:E82144 RefSeq:NP_231520.1 ProteinModelPortal:Q9KQW2
DNASU:2613640 GeneID:2613640 KEGG:vch:VC1886 PATRIC:20082814
ProtClustDB:CLSK874583 Uniprot:Q9KQW2
Length = 1155
Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
Identities = 223/583 (38%), Positives = 337/583 (57%)
Query: 186 EYVFIEYADGMAKLPVKQAS-RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQ 244
EYV +EY + AKL V +S ++ RY+ + L KL AW + + K ++
Sbjct: 512 EYVMLEYQNE-AKLYVPVSSLNLISRYS--GGAEEAAQLHKLGGE-AWVKARRKAAEKVR 567
Query: 245 KMVVDLMELYLHR-LKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETP 303
+ +L+++Y R +K + A F A FP+E T DQ A V D+ + +
Sbjct: 568 DVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKA- 626
Query: 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKV 363
MDRL+CGDVGFGKTEVA+RA F GKQ VL PT +LA+QHF+ +RF+ P I+V
Sbjct: 627 MDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLP-IRV 685
Query: 364 GLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE 423
+LSRF+S E+++ L + G ++I+VGTH LL S + + +LGLL+VDEE RFGV+QKE
Sbjct: 686 EVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKE 745
Query: 424 KIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVI- 482
K+ + + VD+LTL+ATPIPRTL +A++G RD S+I+TPP RL IKT + S++ VI
Sbjct: 746 KVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQ-SEDSVIR 804
Query: 483 SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQ 542
A+ E+ RGGQV+++ +++ +++ L++ P I +AHGQ R+LE+ M F
Sbjct: 805 EAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRERELEKVMNDFYH 864
Query: 543 GAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602
+L+CT I+E+G+D+ ANTII+ GLAQL+QLRGRVGR+ +A+AYL P
Sbjct: 865 QRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPP 924
Query: 603 SLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML 662
++ G GF LA D+ IRG G + GE+Q+G + +VG L+ EML
Sbjct: 925 KAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGFTLYMEML 984
Query: 663 ---FESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIW 719
E+L E + + + ++++ + LP EYI + + M + A +D
Sbjct: 985 EQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYKQIASVASKDE- 1043
Query: 720 CLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYA 762
L + L ++GK P + LL ++ A + + KI A
Sbjct: 1044 -LAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEA 1085
>TIGR_CMR|SPO_2074 [details] [associations]
symbol:SPO_2074 "transcription-repair coupling factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003684 GO:GO:0006281
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259
HOGENOM:HOG000216592 KO:K03723 OMA:QAYAYLM TIGRFAMs:TIGR00580
RefSeq:YP_167304.1 ProteinModelPortal:Q5LRQ1 GeneID:3193158
KEGG:sil:SPO2074 PATRIC:23377489 ProtClustDB:CLSK863099
Uniprot:Q5LRQ1
Length = 1142
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 225/581 (38%), Positives = 330/581 (56%)
Query: 186 EYVFIEYAD-GMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQ 244
E + ++YA+ LPV+ +L +Y L +L AW+ +K K K I+
Sbjct: 498 ECIALDYAEEARLYLPVENIE-LLSKYG-----HEEGLLDRLGGG-AWQAKKAKLKERIR 550
Query: 245 KMVVDLMELYLHRLKQKRPPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETP 303
+M L+ + R +K P P A +F+A+FPY+ T DQ +A DV DL P
Sbjct: 551 EMADRLIRVAAERALRKAPVMDPPPHAWEDFSARFPYQETDDQLRAIGDVMDDL-HSGMP 609
Query: 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKV 363
MDRLICGDVGFGKTEVA+RA F +G Q V+APT +LA+QH +RF +P ++V
Sbjct: 610 MDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAVIAPTTLLARQHAASFRDRFRGFP-LEV 668
Query: 364 GLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE 423
LSRF S E ++ + + G ++I++GTH+LL + + NLGLL++DEEQ FGV KE
Sbjct: 669 RQLSRFISAKEAQQTREGLARGTVDIVIGTHALLAKGIRFQNLGLLIIDEEQHFGVGHKE 728
Query: 424 KIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVIS 483
++ + V VLTL+ATPIPRTL L+LTG RD S+I TPP +RL I+T++S F V
Sbjct: 729 RLKQLRSDVHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPIDRLAIRTYVSEFDAVTVRE 788
Query: 484 AIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG 543
A+ E RGGQ FYV+PRI L + FL++ P + +AHGQ + +L++ M F G
Sbjct: 789 ALLREHYRGGQSFYVVPRITDLPDIEAFLKEQLPELTYVVAHGQMAAGELDDRMNAFYDG 848
Query: 544 AIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603
+L+ T IVESGLDI ANT++V FGLAQLYQ+RGRVGR+ A+AYL ++
Sbjct: 849 KYDVLLATTIVESGLDIPTANTMVVHRADMFGLAQLYQIRGRVGRSKARAYAYLTTKPRA 908
Query: 604 LLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLF 663
L+ G GF LA +D+ IRG G + GE+Q+G + +VG +L+ ML
Sbjct: 909 RLTPAAEKRLRVLASLDTLGAGFSLASQDLDIRGAGNLLGEEQSGQMPDVGYELYQSMLE 968
Query: 664 ESLSKVDEHCVISVPYK----SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIW 719
E+++K+ + + + QI++ + +P EY+ L+ + + +
Sbjct: 969 EAIAKIRSGQMEGLSEADDQWAPQINLGVPVLIPEEYVPDLDVRLGLYRRLSSLTTKVE- 1027
Query: 720 CLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 760
L F L ++GK P + LL + ++ M GI K+
Sbjct: 1028 -LEGFAAELIDRFGKLPKEVNTLLLVVRIKAMCKRAGIAKL 1067
>TIGR_CMR|APH_0107 [details] [associations]
symbol:APH_0107 "transcription-repair coupling factor"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
GO:GO:0003684 GO:GO:0006281 EMBL:CP000235 GenomeReviews:CP000235_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259 eggNOG:COG1197
HOGENOM:HOG000216592 KO:K03723 TIGRFAMs:TIGR00580
ProtClustDB:CLSK749334 RefSeq:YP_504735.1 ProteinModelPortal:Q2GLL6
STRING:Q2GLL6 GeneID:3931221 KEGG:aph:APH_0107 PATRIC:20948776
OMA:VIIRDAL BioCyc:APHA212042:GHPM-142-MONOMER Uniprot:Q2GLL6
Length = 1139
Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
Identities = 215/581 (37%), Positives = 335/581 (57%)
Query: 186 EYVFIEYA-DGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQ 244
++V I+Y D +PV+ ++ +Y + + L +L ++AW ++ K K I
Sbjct: 494 DFVEIKYRNDDKLFVPVEDTD-LITKYGINTDV----VLDRLG-SSAWHDKQNKLKKRID 547
Query: 245 KMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPM 304
+ L+ R + + +F + PY T DQ KA DVE DL R M
Sbjct: 548 DIAKTLLHAEAMRKLADGSRFLPSSLYIDFCKECPYVETEDQLKAIADVENDLA-RGKVM 606
Query: 305 DRLICGDVGFGKTEVALRAIFCVVSAGK--QAMVLAPTIVLAKQHFDVVSERFSKYPDIK 362
DRLICGDVGFGKTE+ALRA F VV+ Q VL PT +L +QHF ERF Y +
Sbjct: 607 DRLICGDVGFGKTEIALRAAFLVVNEDITCQVAVLVPTTLLCRQHFLAFKERFKNYK-VN 665
Query: 363 VGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK 422
+ LS+ +K +K++ + ++ G +NII+GT +LL + + +L LL++DEEQ FGV+QK
Sbjct: 666 IQQLSKATAK-KKQQIREGLEEGSINIIIGTSALLSDSIQFLDLRLLIIDEEQHFGVQQK 724
Query: 423 EKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVI 482
EK+ K V VL+LSATPIPRTL+++L+ +D S++ TPP R ++ ++ F ++ +
Sbjct: 725 EKLRLLKHDVHVLSLSATPIPRTLHMSLSNIKDLSILRTPPIGRTTVEISITHFDEKTIK 784
Query: 483 SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQ 542
+AI E++RGG+VF+ P I +E + LQ+ P V IA+AHG L++ M F
Sbjct: 785 TAILNEVNRGGRVFFTCPLIADIEPVLTRLQKLVPEVKIAVAHGGTAPLALDKIMNDFFD 844
Query: 543 GAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602
G +L+ T+I+ESG+DI ANTII+ + FGLAQLYQL+GRVGR+ + +AYL +K
Sbjct: 845 GKFSLLLTTSIIESGIDIPFANTIIIYNADMFGLAQLYQLKGRVGRSTTQGYAYLILSNK 904
Query: 603 SLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML 662
+ + G GF L+ +DM +RGFG + GE+Q+G++ VG++L+ ML
Sbjct: 905 ATSNSPGMKRLEALKSLNSVGSGFALSLQDMDMRGFGNLVGEEQSGNIKEVGIELYHRML 964
Query: 663 FESLSKVDEHCVIS-VPYKSVQIDININPRLPSEYINHLENPMEMVNEAE--KAAEQDIW 719
E+L S V ++++DIN N R+P YI LE M++ + K E+
Sbjct: 965 EEALETCKMTTESSAVSCHNIKVDINANVRIPESYIQELELRMQVYKKISSLKTPEE--- 1021
Query: 720 CLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 760
+ +++E L+ ++G P + LL ++++ + A IGI +I
Sbjct: 1022 -ISRYSEELKDRFGMPPREVINLLDIIHIKHLCARIGIAEI 1061
>UNIPROTKB|P64326 [details] [associations]
symbol:mfd "Transcription-repair-coupling factor"
species:1773 "Mycobacterium tuberculosis" [GO:0005829 "cytosol"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001650 InterPro:IPR004576 InterPro:IPR005118
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF03461
PROSITE:PS51194 SMART:SM00490 SMART:SM00982 Pfam:PF02559
GO:GO:0005829 GO:GO:0005886 GO:GO:0005524 EMBL:BX842575
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0003684 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR003711 SMART:SM01058
SUPFAM:SSF141259 eggNOG:COG1197 KO:K03723 TIGRFAMs:TIGR00580
PIR:G70622 RefSeq:NP_215536.1 RefSeq:NP_335485.1
RefSeq:YP_006514381.1 ProteinModelPortal:P64326 SMR:P64326
IntAct:P64326 PRIDE:P64326 EnsemblBacteria:EBMYCT00000001215
EnsemblBacteria:EBMYCT00000069023 GeneID:13319583 GeneID:886077
GeneID:925151 KEGG:mtc:MT1048 KEGG:mtu:Rv1020 KEGG:mtv:RVBD_1020
PATRIC:18124052 TubercuList:Rv1020 HOGENOM:HOG000216591 OMA:DVFPPTE
ProtClustDB:CLSK871887 Uniprot:P64326
Length = 1234
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 220/596 (36%), Positives = 329/596 (55%)
Query: 186 EYVFIEYADGMAKLPVKQASRMLYRYNLPNETKR-----PRTLSKLSDTTAWERRKTKGK 240
EY+ +EYA K ++ + ++ R LS+L + W KTK +
Sbjct: 548 EYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSD-WANTKTKAR 606
Query: 241 VAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDL 297
A++++ +L+ LY R Q P + P P AE F + T DQ A +V+ D+
Sbjct: 607 RAVREIAGELVSLYAKR--QASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEVKADM 664
Query: 298 TERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK 357
E+ PMDR+ICGDVG+GKTE+A+RA F V GKQ VL PT +LA QH ER S
Sbjct: 665 -EKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSG 723
Query: 358 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRF 417
+P + + LSRF AE +D + G ++I++GTH LL + V + +LGL+VVDEEQRF
Sbjct: 724 FP-VTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRF 782
Query: 418 GVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFS 477
GV+ KE I S + VDVLT+SATPIPRTL ++L G R+ S I TPP ER P+ T++
Sbjct: 783 GVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHD 842
Query: 478 KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETM 537
+++ +A++ EL R GQ FYV R+ ++ +++ P + +AHGQ LE T+
Sbjct: 843 DKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTV 902
Query: 538 EKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYL 597
++F IL+CT IVE+GLDI NANT+IV+ FGL+QL+QLRGRVGR+ + +AY
Sbjct: 903 QRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYF 962
Query: 598 FYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDL 657
YP + L++ G G +A KD+ IRG G + G +Q+G V VG DL
Sbjct: 963 LYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDL 1022
Query: 658 FFEMLFESL--------SKVDEHCVISVPY-KSVQIDININPRLPSEYINHLENPMEMVN 708
+ ++ E+L + D V + K V+ID+ ++ LP +YI +E
Sbjct: 1023 YVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYR 1082
Query: 709 E-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYAS 763
A ++++++ ++ + L +YG P L +R + GIT + A+
Sbjct: 1083 RLAAASSDREVAAVV---DELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAA 1135
>TIGR_CMR|CJE_1228 [details] [associations]
symbol:CJE_1228 "transcription-repair coupling factor"
species:195099 "Campylobacter jejuni RM1221" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
GO:GO:0003684 GO:GO:0006281 EMBL:CP000025 GenomeReviews:CP000025_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259 eggNOG:COG1197
KO:K03723 HOGENOM:HOG000216591 RefSeq:YP_179216.1
ProteinModelPortal:Q5HU19 STRING:Q5HU19 GeneID:3231735
KEGG:cjr:CJE1228 PATRIC:20044252 OMA:EDTQNIH ProtClustDB:CLSK872584
BioCyc:CJEJ195099:GJC0-1254-MONOMER Uniprot:Q5HU19
Length = 978
Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
Identities = 199/561 (35%), Positives = 310/561 (55%)
Query: 186 EYVFIEYADG-MAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWE-RRKTKGKV-A 242
E+V IEY + LPV+ ++ +Y L P +L KL T+ + + K K K+ A
Sbjct: 374 EFVAIEYQNSDKLLLPVENLY-LIDKY-LGVSGSIP-SLDKLGKTSFIKLKEKLKTKLLA 430
Query: 243 IQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERET 302
I +V +M ++ K+ N +F A + T DQ KA ++ +D +
Sbjct: 431 IASEIV-IMAAKRSLVQAKKITVDLNRQ-TDFIASAGFIYTSDQDKACHEILQDFQSGKV 488
Query: 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIK 362
MDRL+ GDVGFGKTEVA+ AI+ VV +G A + APT +L+ QH+ + +RF + DIK
Sbjct: 489 -MDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPF-DIK 546
Query: 363 VGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK 422
V L RF S AEK++ L +K ++VGTH+LL V NL L+++DEE +FGVKQK
Sbjct: 547 VFKLDRFTSSAEKKQVLQNLKENKACVVVGTHALLS--VECENLALVIIDEEHKFGVKQK 604
Query: 423 EKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVI 482
EK+ + +L++SATPIPR+L AL+ + S++ TPP +R+ ++T + +
Sbjct: 605 EKLKEITQNSHILSMSATPIPRSLNQALSSIKSYSVLQTPPEDRMDVRTFVKENDDALLK 664
Query: 483 SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQ 542
AI EL RGGQ+FY+ I +E+ L + F + I I H + ++ EE M KF
Sbjct: 665 EAIARELRRGGQIFYIHNHIASIEQCKKHLLELFSTLRILILHSKIDAKMQEEEMLKFEN 724
Query: 543 GAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602
+L+ T+IVESG+D+ NANTIIV+ +FG+A L+QLRGRVGR+DK+ + Y DK
Sbjct: 725 KEYDLLLSTSIVESGIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDK 784
Query: 603 SLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML 662
+ ++ G G LA D+ IRG G + G Q+G + +G L+ +ML
Sbjct: 785 NAITKDALKRLVSLESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKML 844
Query: 663 FESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLM 722
+ L+ + ++ V K + + +N+N L SE I+ +E+ K EQ + +
Sbjct: 845 EDELNALSKNEVDQKENK-LDLKLNVNAFLNSELISEDRLRLELYRRLSKC-EQ-VHEVY 901
Query: 723 QFTESLRRQYGK-EPYSMEIL 742
+ + ++GK + Y+ + L
Sbjct: 902 EIEGEIEDRFGKLDIYTKQFL 922
>TIGR_CMR|CHY_1468 [details] [associations]
symbol:CHY_1468 "ATP-dependent DNA helicase RecG"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR004609 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006281 GO:GO:0003676 GO:GO:0006310
GO:GO:0004003 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1200
KO:K03655 ProtClustDB:PRK10917 TIGRFAMs:TIGR00643
RefSeq:YP_360300.1 ProteinModelPortal:Q3AC34 STRING:Q3AC34
GeneID:3726707 KEGG:chy:CHY_1468 PATRIC:21276067
HOGENOM:HOG000036619 OMA:ETYWVKH
BioCyc:CHYD246194:GJCN-1467-MONOMER Uniprot:Q3AC34
Length = 677
Score = 638 (229.6 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
Identities = 156/457 (34%), Positives = 253/457 (55%)
Query: 213 LPNETKRPRTLSKLSDTTA---WERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNP 269
LP E R +L L + + ++A ++MV + L+ + + Y K P
Sbjct: 175 LPEEILRKYSLPDLKQALMNLHFPESSEQSELARRRMVFEEFLLFFLAIGLYKENYQKKP 234
Query: 270 AIA---------EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320
I +F P++ T Q+K + +++ DL ++ PM+RL+ GDVG GKT +A
Sbjct: 235 GIVIAGSGELEKKFIDSLPFKLTSAQEKVWREIKEDLAAKK-PMNRLVQGDVGSGKTILA 293
Query: 321 LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380
A+ V AG Q ++APT +LA+QH+ +S F+ IKV LLS S +KE
Sbjct: 294 ALALVKAVEAGFQGALMAPTEILAEQHYLNLSRLFAPL-GIKVVLLSGSLSSGKKEAVYK 352
Query: 381 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSAT 440
IK+G+ ++I+GTH+L+ V+++NLGL V+DE+ RFGV+Q+ + + V+ L +SAT
Sbjct: 353 AIKNGYADVIIGTHALIQEAVIFDNLGLAVIDEQHRFGVEQRSSLVEKGLYVNQLVMSAT 412
Query: 441 PIPRTLYLALTGFRDASLISTPPPERLPIKTH-LSAFSKEKVISAIKYELDRGGQVFYVL 499
PIPRTL L L G D S++ P R PIKT+ LS+ K K + + ++ G Q + V
Sbjct: 413 PIPRTLALTLYGDLDVSIVDALPAGRKPIKTYWLSSQDKGKAYAFLLKQVAEGRQGYVVC 472
Query: 500 P--------RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICT 551
P +++ + + + L + FP + HG+ + EE ME F + I+IL+ T
Sbjct: 473 PLVEESEKLQVEAVTKLYEKLSKKFPQFKWGLMHGRLKPAEKEEVMENFRKNNIQILVST 532
Query: 552 NIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXX 611
++E G+D+ NAN II++D +FGLAQL+Q+RGRVGR + +++ +L L + +
Sbjct: 533 TVIEVGVDVPNANVIIIEDAWRFGLAQLHQIRGRVGRGEHQSYCFL------LGNPRNQE 586
Query: 612 XXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTG 648
GF++AE+D+ +RG G + G +Q+G
Sbjct: 587 GIVRMKIMEKYNDGFKIAEEDLKLRGPGELSGTRQSG 623
Score = 37 (18.1 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 689 NPRLPSEYINHLENPMEMVNEAEKAAEQDI 718
NPR E I ++ ME N+ K AE+D+
Sbjct: 581 NPR-NQEGIVRMKI-MEKYNDGFKIAEEDL 608
>TIGR_CMR|CBU_0305 [details] [associations]
symbol:CBU_0305 "ATP-dependent DNA helicase RecG"
species:227377 "Coxiella burnetii RSA 493" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR004365 InterPro:IPR004609 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF01336 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006281 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006310 GO:GO:0004003
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000036617 KO:K03655 OMA:DRTRITP ProtClustDB:PRK10917
TIGRFAMs:TIGR00643 HSSP:Q9WY48 RefSeq:NP_819348.1
ProteinModelPortal:Q83EL4 PRIDE:Q83EL4 GeneID:1208187
KEGG:cbu:CBU_0305 PATRIC:17929305
BioCyc:CBUR227377:GJ7S-312-MONOMER Uniprot:Q83EL4
Length = 704
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 148/431 (34%), Positives = 238/431 (55%)
Query: 234 RRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP---KNPAIAEFAAQFPYEPTPDQKKAF 290
+ ++ ++A +++V + L RL + P P KN + +E T QK+
Sbjct: 231 KHPSQQRLAFEELVAQQLGLQQWRLLIRTQPAPILIKNNWQEKLKRALTFELTSAQKRVI 290
Query: 291 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 350
++ +DL++ + PM RL+ GDVG GKT VA AI V G Q+ ++APT +LA+QH+ V
Sbjct: 291 GEINQDLSKPK-PMLRLLQGDVGSGKTIVAAMAILKAVENGYQSAIMAPTELLAEQHYQV 349
Query: 351 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410
FS I+VG L+ + + +E+ L I G L++I+GTH+L + V + L +V
Sbjct: 350 FQRWFSPL-GIRVGWLAGSLTPSAREKTLQEIASGQLSVIIGTHALFQAAVTFQQLAFIV 408
Query: 411 VDEEQRFGVKQ----KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER 466
+DE+ RFGV Q KEK A+ L ++ATPIPRTL + D S+I PP R
Sbjct: 409 IDEQHRFGVHQRLALKEK-ATPNYHPHQLIMTATPIPRTLAMTAYADLDFSIIDEQPPGR 467
Query: 467 LPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLE----EPMD--F--LQQAFP 517
PI T L + S+ +KVI IK ++G QV++V I E E + F LQQ+F
Sbjct: 468 KPITTVLISNSRRDKVIERIKKNCEQGKQVYWVCTLITDSEVLQCETAEATFKKLQQSFT 527
Query: 518 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 577
+ + + HG+ + + M F G I +L+ T ++E G+D+ NA+ +++++ ++ GLA
Sbjct: 528 NLSVGLIHGRLTKEEKDVVMGAFKNGDIDLLVATTVIEVGVDVPNASLMVIENSERLGLA 587
Query: 578 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRG 637
Q++QLRGRVGR +++++ L Y + LS GF +A+KD+ +RG
Sbjct: 588 QIHQLRGRVGRGEQKSYCVLLYQEP--LSKNARARLTLLRDTQ---DGFLVAQKDLELRG 642
Query: 638 FGTIFGEQQTG 648
G + G +Q+G
Sbjct: 643 PGELLGARQSG 653
>UNIPROTKB|Q0C0Q6 [details] [associations]
symbol:HNE_1987 "Putative ATP-dependent DNA helicase recG"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR004365
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01336
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006281
GO:GO:0003676 GO:GO:0006310 GO:GO:0004003 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CP000158 GenomeReviews:CP000158_GR
GO:GO:0006268 eggNOG:COG1200 HOGENOM:HOG000036617 KO:K03655
RefSeq:YP_760687.1 ProteinModelPortal:Q0C0Q6 STRING:Q0C0Q6
GeneID:4288352 KEGG:hne:HNE_1987 PATRIC:32216817 OMA:YLYERDE
ProtClustDB:CLSK2531604 BioCyc:HNEP228405:GI69-2012-MONOMER
Uniprot:Q0C0Q6
Length = 692
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 146/427 (34%), Positives = 220/427 (51%)
Query: 259 KQKRP-PYPKNP--AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFG 315
+++RP P K P A+ PY PT Q +A D+ D+ R PM RL+ GDVG G
Sbjct: 241 RRQRPAPIIKAPPSAVNRLIDALPYRPTGAQMRAAADISSDVA-RGYPMRRLLQGDVGAG 299
Query: 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 375
KT VA A +AG Q+ +APT VLA+Q +D + S L R + A +
Sbjct: 300 KTLVAAFAAVEAAAAGFQSAFMAPTEVLARQQYDTLDALLSPLGYTVAALSGRDRGSA-R 358
Query: 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVL 435
E L + G + I+ GTH+L V + NLGL++VDE+ RFGV + K+A + +L
Sbjct: 359 EATLMGLADGSIQIVAGTHALFQEAVNFRNLGLIIVDEQHRFGVSDRMKLAGKSENPHML 418
Query: 436 TLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQ 494
+SATPIPRTL A+ G D S++ PP R P++T ++ E VI AI L RG +
Sbjct: 419 VMSATPIPRTLAQAVHGDLDVSILDEKPPGRKPVETRAVPDTRLEDVIEAIGRALKRGER 478
Query: 495 VFYVLPRIKGLEEPMDFLQQ--AFPG---VDIAIAHGQQYSRQLEETMEKFAQGAIKILI 549
F+V PR+ ++ + + A V + HG+ + + + +E F G +IL+
Sbjct: 479 AFWVCPRVDIEDDDSSAVVRHAALEEELHVKAGLVHGRLKASEKDAALEDFRTGRTRILV 538
Query: 550 CTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQX 609
T ++E G+D+ A ++++ + FGLAQL+QLRGRVGR DK + L Y + L D
Sbjct: 539 ATTVIEVGVDVPEATIMVIERAEGFGLAQLHQLRGRVGRGDKPSFCLLLY--RPPLGDTA 596
Query: 610 XXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV 669
GF++AE D +RG G + G +Q G +DL +++
Sbjct: 597 RERLDTLRRTE---DGFEIAEADFRLRGAGDVLGVRQAGMTDYRIIDLAKHAALLEIARK 653
Query: 670 DEHCVIS 676
D V++
Sbjct: 654 DAEAVLT 660
>TIGR_CMR|BA_3993 [details] [associations]
symbol:BA_3993 "ATP-dependent DNA helicase RecG"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0009378 "four-way junction helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR004609
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006281 GO:GO:0003676 GO:GO:0006310
GO:GO:0004003 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K03655
ProtClustDB:PRK10917 TIGRFAMs:TIGR00643 HOGENOM:HOG000036619
OMA:ETYWVKH HSSP:Q9WY48 RefSeq:NP_846235.1 RefSeq:YP_022668.1
RefSeq:YP_029957.1 ProteinModelPortal:Q81WI3 DNASU:1086614
EnsemblBacteria:EBBACT00000008516 EnsemblBacteria:EBBACT00000016998
EnsemblBacteria:EBBACT00000021314 GeneID:1086614 GeneID:2819857
GeneID:2849256 KEGG:ban:BA_3993 KEGG:bar:GBAA_3993 KEGG:bat:BAS3706
BioCyc:BANT260799:GJAJ-3764-MONOMER
BioCyc:BANT261594:GJ7F-3881-MONOMER Uniprot:Q81WI3
Length = 682
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 147/471 (31%), Positives = 246/471 (52%)
Query: 191 EYADGMAK-LPVKQASR--MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMV 247
EY D + + LP SR +L RY P L A R + Q +
Sbjct: 166 EYGDSIVEVLPDGLLSRYKLLPRYEALRALHFPTGQEDLKQ--ARRRFVYEEFFLFQLKM 223
Query: 248 VDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRL 307
L ++ K + P + EF P+ T Q++ ++ +D+T M+RL
Sbjct: 224 QTLRKMERENSKGTKKEIPSEE-LQEFIDALPFPLTGAQRRVVDEIMKDMTSPYR-MNRL 281
Query: 308 ICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLS 367
+ GDVG GKT VA ++ A Q ++ PT +LA+QH+ ++E FS + +KV LL+
Sbjct: 282 LQGDVGSGKTVVAAIGLYAAKLAHYQGALMVPTEILAEQHYQSLAETFSHF-GMKVELLT 340
Query: 368 RFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIAS 427
+ E L ++ G ++I+VGTH+L+ V+++ LGL++ DE+ RFGV Q+ +
Sbjct: 341 SSVKGVRRREILAKLEQGEIDILVGTHALIQDEVIFHRLGLVITDEQHRFGVAQRRVLRE 400
Query: 428 FKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIK 486
S DVL ++ATPIPRTL + G D S+I P R I+T+ + ++V+ ++
Sbjct: 401 KGESPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETYWAKHDMLDRVLGFVE 460
Query: 487 YELDRGGQVFYVLPRIKGLEE-----PMDF---LQQAFPG-VDIAIAHGQQYSRQLEETM 537
E+++G Q + + P I+ E+ +D L + G + + HG+ S++ EE M
Sbjct: 461 KEINKGRQAYVICPLIEESEKLDVQNAIDLHSMLTHHYQGKCQVGLMHGRLSSQEKEEIM 520
Query: 538 EKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYL 597
+F++ ++IL+ T +VE G+++ NA +++ D ++FGL+QL+QLRGRVGR ++++ L
Sbjct: 521 GQFSENKVQILVSTTVVEVGVNVPNATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLL 580
Query: 598 FYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTG 648
KS + GF L+EKD+ +RG G FG +Q+G
Sbjct: 581 IADPKSETGKERMRIMTET------NDGFVLSEKDLELRGPGDFFGSKQSG 625
>TIGR_CMR|NSE_0690 [details] [associations]
symbol:NSE_0690 "ATP-dependent DNA helicase RecG"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0008026 eggNOG:COG1200
HOGENOM:HOG000036617 KO:K03655 RefSeq:YP_506567.1
ProteinModelPortal:Q2GD79 STRING:Q2GD79 GeneID:3931634
KEGG:nse:NSE_0690 PATRIC:22681399 OMA:ATHAILA
ProtClustDB:CLSK2528120 BioCyc:NSEN222891:GHFU-703-MONOMER
Uniprot:Q2GD79
Length = 675
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 146/426 (34%), Positives = 227/426 (53%)
Query: 253 LYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGD 311
L+ L QK+ P + I A ++ P+ T Q++ + L ++ M L+ GD
Sbjct: 229 LHTQVLNQKKEPIKGDGRITALLRSRLPFSLTEGQEEVIKKIYA-LQGQDVRMVALLQGD 287
Query: 312 VGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQS 371
VG GKT V + A+ V GKQ ++L+PTIVLAKQHF+V+ + P++K LL+ +
Sbjct: 288 VGSGKTLVVIFAMLNAVEVGKQVVLLSPTIVLAKQHFEVLQKLL---PELKPVLLTGEKI 344
Query: 372 KAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKIS 431
+E+ L I+ G +IV TH++L +++ +LGLLV+DE+ RFG Q+ K+
Sbjct: 345 ACSREQFLQDIRSGDAKVIVATHAILAVGILFFDLGLLVIDEQHRFGANQRTKLIRENPG 404
Query: 432 VDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELD 490
D++ +SATPIPRT+ L G + P R + T SK K+I IK L
Sbjct: 405 ADLVLVSATPIPRTIGQVLFGSITLLNLREKPKSRPVVTTSTVTKSKIAKLIERIKVILG 464
Query: 491 RGGQVFYVLPRIKGLE--------EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQ 542
+G +VF++ P I+ E E L++ F ++ HG ++++EE + F
Sbjct: 465 KGSKVFWICPVIEESENLKVISVTERFRLLKKHFAD-EVDCVHGVLSAQKMEEKLTAFRN 523
Query: 543 GAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602
G KIL+ T +VE G+DI + + I+++D FGLAQL+QLRGRVGR +K++ L Y +
Sbjct: 524 GKTKILLATTVVEVGVDIPDVDVIVIEDADHFGLAQLHQLRGRVGRGNKKSFCILLYDSQ 583
Query: 603 SLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFE-M 661
+ + GF +AE+D +RG G IFG +Q+G +D FE
Sbjct: 584 KITEN----GKKRLKILRESSDGFFIAEEDFKLRGVGDIFGVRQSGFYKFKFLDRPFEHS 639
Query: 662 LFESLS 667
F+S S
Sbjct: 640 FFDSAS 645
>TIGR_CMR|DET_1268 [details] [associations]
symbol:DET_1268 "ATP-dependent DNA helicase RecG"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR004609 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006281
GO:GO:0003676 GO:GO:0006310 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0004003 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1200
KO:K03655 ProtClustDB:PRK10917 TIGRFAMs:TIGR00643
HOGENOM:HOG000036619 OMA:ETYWVKH RefSeq:YP_181980.1
ProteinModelPortal:Q3Z719 STRING:Q3Z719 GeneID:3229414
KEGG:det:DET1268 PATRIC:21609563
BioCyc:DETH243164:GJNF-1269-MONOMER Uniprot:Q3Z719
Length = 740
Score = 450 (163.5 bits), Expect = 8.7e-54, Sum P(2) = 8.7e-54
Identities = 100/298 (33%), Positives = 165/298 (55%)
Query: 361 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVK 420
++V L+ ++K+ + IK G ++I +GTH+L+ + + +LGL V+DE+ RFGV+
Sbjct: 394 LRVALMISDMKSSQKDILKEKIKKGEIDIAIGTHALIQKEIRFKSLGLAVIDEQHRFGVE 453
Query: 421 QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTH-LSAFSKE 479
Q+ + S ++ +L ++ATPIPRTL L L G D S+I PP R IKT L +
Sbjct: 454 QRSALRSKGLNPHILIMTATPIPRTLALTLYGELDLSVIDELPPGRQSIKTRWLKPEQRN 513
Query: 480 KVISAIKYELDRGGQVFYVLPRIKGLE---------EPMDFLQQAFPGVDIAIAHGQQYS 530
+ I+ +++ G Q F + P ++ E E + FP +A+ HG+ +
Sbjct: 514 SAYNFIRKQIEAGRQAFIICPLVEESEAIQAKAATAEYETLSSEVFPESKVALLHGRMNA 573
Query: 531 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 590
+ E M+ F +G + IL+ T +VE G+DI NA ++V+ +FGL+QL+Q RGRVGR
Sbjct: 574 AEKESIMKHFNEGKMDILVSTPVVEVGIDIPNATVMLVESADRFGLSQLHQFRGRVGRGT 633
Query: 591 KEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTG 648
++++ + SLL + GF+LAE+D+ +RG G FG +Q+G
Sbjct: 634 EQSYCMFLAENPSLLGQERLSIIESTQ------DGFKLAEEDLRLRGPGEFFGTRQSG 685
Score = 175 (66.7 bits), Expect = 8.7e-54, Sum P(2) = 8.7e-54
Identities = 36/88 (40%), Positives = 55/88 (62%)
Query: 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328
PAI F +Q P++ T Q K D++ D++ + PM RL+ G+VG GKT VA+ ++F
Sbjct: 285 PAIDHFISQLPFKLTDAQTKCLADIKADIS-KSVPMSRLLQGEVGSGKTIVAVISLFTAA 343
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFS 356
+ G Q +APT +LA+QHF V+ F+
Sbjct: 344 ANGLQGAFMAPTEILAEQHFKSVTRLFA 371
>TIGR_CMR|ECH_0062 [details] [associations]
symbol:ECH_0062 "ATP-dependent DNA helicase RecG"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003676
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1200 HOGENOM:HOG000036617 KO:K03655 RefSeq:YP_506893.1
ProteinModelPortal:Q2GI40 STRING:Q2GI40 GeneID:3928041
KEGG:ech:ECH_0062 PATRIC:20575691 OMA:YNLMGKF
ProtClustDB:CLSK749554 BioCyc:ECHA205920:GJNR-62-MONOMER
Uniprot:Q2GI40
Length = 679
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 134/382 (35%), Positives = 215/382 (56%)
Query: 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 336
+ P++ T QK+ + + E M +L+ GDVG GKT VAL AI V+ G Q
Sbjct: 255 KLPFKLTEGQKEVISQITKSQAS-ENRMVKLLIGDVGSGKTVVALFAILNVIENGGQVAF 313
Query: 337 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM-IKHGHLNIIVGTHS 395
+APT +LA+QH+ + S + V LL+ SK K++++ ++ G N+++GTH+
Sbjct: 314 MAPTEILAEQHYRWIRAILSDI-SVDVELLT---SKVRKKQNIKKKLQLGECNVVIGTHA 369
Query: 396 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 455
L V +NNL L+++DE+QRFGV Q+ ++ + DVL ++ATPIPRTL + G D
Sbjct: 370 LFQDGVDFNNLNLIIIDEQQRFGVLQRMRLINKSNMADVLFMTATPIPRTLEQVVYGDID 429
Query: 456 ASLISTPPPERLPIKTHLSAFSKE-KVISAIKYELDRGGQVFYVLPRIKGLE-------E 507
+ P RLPI+T + + +VI+ ++ L G + +++ P I+ E E
Sbjct: 430 CLRLKDKPHNRLPIQTSIVNIERLFEVIAKLQLALQEGNKAYWICPYIEDSELLDIAAAE 489
Query: 508 PMDF-LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
F LQ+ F G D+ + H + + +E M F G IK+L+ T ++E G+DI +A I
Sbjct: 490 KRFFTLQEVF-GKDVGLIHSRLPKIEKDEVMMSFYNGNIKLLVATTVIEVGVDIPDATII 548
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGF 626
I+++ +QFGL+QL+QLRGRVGR+DK + L + + +LS GF
Sbjct: 549 IIENAEQFGLSQLHQLRGRVGRSDKSSFCILLHGN--MLSK---IAYKKLCILRKFQDGF 603
Query: 627 QLAEKDMGIRGFGTIFGEQQTG 648
+AE+D+ +RG G + G +Q+G
Sbjct: 604 YIAEQDLLLRGSGDVLGIKQSG 625
>UNIPROTKB|P24230 [details] [associations]
symbol:recG "RecG DNA helicase" species:83333 "Escherichia
coli K-12" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=IDA] [GO:0009379 "Holliday junction helicase
complex" evidence=IDA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR004365 InterPro:IPR004609 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF01336 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006310 GO:GO:0004003 EMBL:L10328
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:M64367
EMBL:X59550 PIR:JH0265 RefSeq:NP_418109.1 RefSeq:YP_491782.1
ProteinModelPortal:P24230 SMR:P24230 DIP:DIP-10653N IntAct:P24230
MINT:MINT-1301344 PRIDE:P24230 EnsemblBacteria:EBESCT00000001039
EnsemblBacteria:EBESCT00000014226 GeneID:12933935 GeneID:948162
KEGG:ecj:Y75_p3522 KEGG:eco:b3652 PATRIC:32122791 EchoBASE:EB0822
EcoGene:EG10829 eggNOG:COG1200 HOGENOM:HOG000036617 KO:K03655
OMA:DRTRITP ProtClustDB:PRK10917 BioCyc:EcoCyc:EG10829-MONOMER
BioCyc:ECOL316407:JW3627-MONOMER Genevestigator:P24230
GO:GO:0009379 TIGRFAMs:TIGR00643 Uniprot:P24230
Length = 693
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 155/500 (31%), Positives = 250/500 (50%)
Query: 191 EYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDL 250
E + GM LP +A R L+R P P TL +LSD + + + + + +L
Sbjct: 186 ELSQGMMTLP--EALRTLHR---P-----PPTL-QLSDLETGQHPAQRRLILEELLAHNL 234
Query: 251 MELYLHRLKQK--RPPYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRL 307
L L Q+ P N + + A P++PT Q + ++ERD+ + PM RL
Sbjct: 235 SMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMA-LDVPMMRL 293
Query: 308 ICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLS 367
+ GDVG GKT VA A ++ GKQ ++APT +LA+QH + F+ I+VG L+
Sbjct: 294 VQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPL-GIEVGWLA 352
Query: 368 RFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK----E 423
Q + + I G + +IVGTH++ +V +N L L+++DE+ RFGV Q+ E
Sbjct: 353 GKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWE 412
Query: 424 KIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKT-HLSAFSKEKVI 482
K L ++ATPIPRTL + D S+I PP R P+ T + + +I
Sbjct: 413 KGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDII 472
Query: 483 SAIKYE-LDRGGQVFYVLPRIK--------GLEEPMDFLQQAFPGVDIAIAHGQQYSRQL 533
+ + + G Q ++V I+ E + L+ A P +++ + HG+ +
Sbjct: 473 DRVHHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEK 532
Query: 534 EETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEA 593
+ M F QG + +L+ T ++E G+D+ NA+ +I+++ ++ GLAQL+QLRGRVGR +
Sbjct: 533 QAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVAS 592
Query: 594 HAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNV 653
H L Y K+ LS GF +A+KD+ IRG G + G +QTG+
Sbjct: 593 HCVLLY--KTPLSK---TAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFK 647
Query: 654 GVDLFFEM-LFESLSKVDEH 672
DL + + + ++ H
Sbjct: 648 VADLLRDQAMIPEVQRLARH 667
>TIGR_CMR|SPO_1681 [details] [associations]
symbol:SPO_1681 "ATP-dependent DNA helicase RecG"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR004609
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0006281 GO:GO:0003676 GO:GO:0006310 GO:GO:0004003
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000036617 KO:K03655 ProtClustDB:PRK10917
TIGRFAMs:TIGR00643 RefSeq:YP_166920.1 ProteinModelPortal:Q5LST5
GeneID:3193560 KEGG:sil:SPO1681 PATRIC:23376687 OMA:EHPSLCL
Uniprot:Q5LST5
Length = 696
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 128/383 (33%), Positives = 210/383 (54%)
Query: 276 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 335
A PY PT Q +A ++ D+ M+RL+ GDVG GKT VA A+ V AG Q +
Sbjct: 262 ASLPYRPTNAQARAIEEIAADMAA-PARMNRLLQGDVGAGKTLVAFMALLVAVEAGGQGV 320
Query: 336 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 395
++APT +LA+QH + + ++ + + LL+ AE+ L +K G ++I+VGTH+
Sbjct: 321 MMAPTEILARQHLEGLRP-LAEEAGVVLELLTGRDKGAERRAKLAALKKGDISILVGTHA 379
Query: 396 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 455
+ + V + +L L +VDE+ RFGV+Q+ ++A ++ DVL ++ATPIPR+L LA G D
Sbjct: 380 VFQADVEFADLRLAIVDEQHRFGVRQRMELAEKGMNADVLVMTATPIPRSLALAQYGDMD 439
Query: 456 ASLISTPPPERLPIKTH-LSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE-EPMDFLQ 513
S++ PP R PI+T +S ++VI ++ + G Q ++V P + E + +
Sbjct: 440 VSVLDEKPPGRKPIRTAVISTERMDEVIDHLRRAIAEGRQCYWVCPLVDESEVSDLTAAE 499
Query: 514 QAFP--------GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
F GV + + HGQ + + M F G ++L+ T ++E G+++ NA
Sbjct: 500 DRFKRLRAVLGEGV-VGLVHGQMPPAEKDAAMAAFQTGETQVLVATTVIEVGVNVPNATI 558
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQG 625
++++ + FGLAQL+QLRGRVGR + + L Y L++ G
Sbjct: 559 MVIERAEIFGLAQLHQLRGRVGRGEAASTCLLMYQPP--LTEGGRRRLEVLRETE---DG 613
Query: 626 FQLAEKDMGIRGFGTIFGEQQTG 648
F++AE D+ +RG G + G Q+G
Sbjct: 614 FRIAETDLDMRGAGDLIGTAQSG 636
>TIGR_CMR|APH_1298 [details] [associations]
symbol:APH_1298 "ATP-dependent DNA helicase RecG"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1200 HOGENOM:HOG000036617 KO:K03655 OMA:YLYERDE
ProtClustDB:CLSK749554 RefSeq:YP_505812.1 ProteinModelPortal:Q2GII9
STRING:Q2GII9 GeneID:3931022 KEGG:aph:APH_1298 PATRIC:20951392
BioCyc:APHA212042:GHPM-1300-MONOMER Uniprot:Q2GII9
Length = 702
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 135/428 (31%), Positives = 233/428 (54%)
Query: 233 ERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP---KNPAIAEFAAQFPYEPTPDQKKA 289
E R+ KG++A +++ +Y R +R K E + +E T QK A
Sbjct: 234 EVRRIKGRLAYDELMAYHAAVYFARQHGRRKGVALEVKGTNYQEVLKRLGFELTAGQKSA 293
Query: 290 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349
++ R T + M +L+ GDVG GKT VAL A+ V + Q V+ PT +LA+QH
Sbjct: 294 IREITRAQTS-DQQMAKLLQGDVGSGKTVVALFAMLNTVESSGQVAVMVPTEMLAEQHCS 352
Query: 350 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409
+ ++ + DI + LL+ ++K + H ++ G ++I++GTH+L V ++NL L+
Sbjct: 353 WI-KKLLEGMDICIELLTG-KTKNKNTIHARLLS-GEIHILIGTHALFQESVKFHNLRLV 409
Query: 410 VVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI 469
V+DE+QRFGV Q+ K+ S D+L ++ATPIPRTL L G D + P RLP+
Sbjct: 410 VIDEQQRFGVLQRMKLIEKGDSADILFITATPIPRTLEQILYGNMDRITLKDKPACRLPV 469
Query: 470 KTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKG--------LEEPMDFLQQAFPGVD 520
KT + + + +K + R +++++ P I+G +EE +FL+ F
Sbjct: 470 KTSIVKVCMIDDLCKRLKNMISREHKIYWICPYIEGSEDNDVASVEERFEFLKNMFGNNI 529
Query: 521 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 580
+ ++HG E ++ F G IK+L+ T+I+E G+++ +A I++++ ++FGL+QL+
Sbjct: 530 VGVSHGAMTQIGNESALQAFYAGNIKVLVATSIIEVGINVPDATIIVIENPERFGLSQLH 589
Query: 581 QLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGT 640
QLRGRVGR ++++ L + S ++ + GF +AE+D+ +RG G
Sbjct: 590 QLRGRVGRGHQQSYCILLHGPVSKIAYRKLSVLRDSH------DGFHIAEQDLILRGGGD 643
Query: 641 IFGEQQTG 648
+ G +Q+G
Sbjct: 644 MLGCRQSG 651
>TIGR_CMR|SO_4364 [details] [associations]
symbol:SO_4364 "ATP-dependent DNA helicase RecG"
species:211586 "Shewanella oneidensis MR-1" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR004365 InterPro:IPR004609 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF01336 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006281 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006310 GO:GO:0004003
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000036617 KO:K03655 OMA:DRTRITP ProtClustDB:PRK10917
TIGRFAMs:TIGR00643 HSSP:Q9WY48 RefSeq:NP_719888.2
ProteinModelPortal:Q8E9C0 GeneID:1171966 KEGG:son:SO_4364
PATRIC:23528383 Uniprot:Q8E9C0
Length = 691
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 137/422 (32%), Positives = 222/422 (52%)
Query: 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 333
F P++PT Q++ ++ +DL + PM RL+ GDVG GKT VA A + G Q
Sbjct: 259 FLTSLPFKPTGAQQRVVAEIGKDLAQPH-PMMRLVQGDVGSGKTLVAALAALQAIENGYQ 317
Query: 334 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLS-RFQSKAEKEEHLDMIKHGHLNIIVG 392
++APT +LA+QH + F +KVG L+ + + KA + D I+ G I++G
Sbjct: 318 VAMMAPTELLAEQHAANFAAWFEPL-GLKVGWLAGKLKGKARAQSLAD-IESGAAQIVIG 375
Query: 393 THSLLGSRVVYNNLGLLVVDEEQRFGVKQK----EKIASFKISVDVLTLSATPIPRTLYL 448
TH++ +V+++ L L+++DE+ RFGV Q+ EK + L ++ATPIPRTL +
Sbjct: 376 THAIFQQQVIFHKLALIIIDEQHRFGVHQRMGLREKGINQGFHPHQLIMTATPIPRTLAM 435
Query: 449 ALTGFRDASLISTPPPERLPIKTHLSAFSKE-KVISAIKYEL--DRGGQVFYVLPRIK-- 503
D S+I PP R P+ T S+ +V+ ++ + D+ Q ++V I+
Sbjct: 436 TAYADLDTSIIDELPPGRTPVTTVAIPDSRRNEVLERVRNSVITDKR-QAYWVCTLIEES 494
Query: 504 ------GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 557
E+ + L+QA P + I + HG+ S + ++ M F G I +L+ T ++E G
Sbjct: 495 EVLECQAAEDTAEELRQALPELTIGLVHGRMKSAEKQKIMADFKAGTINLLVATTVIEVG 554
Query: 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXX 617
+D+ N++ +I+++ ++ GLAQL+QLRGRVGR +H L Y K+ LS
Sbjct: 555 VDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLY--KAPLSQ---TASQRLN 609
Query: 618 XXXXXGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEM-LFESLSKVDEHCVIS 676
GF +A+KD+ IRG G + G +QTG DL + L + K+ H +
Sbjct: 610 VLRQSNDGFVIAQKDLEIRGPGEVLGTKQTGLAELKIADLVRDQALIPHIQKLANHVMSQ 669
Query: 677 VP 678
P
Sbjct: 670 AP 671
>TIGR_CMR|GSU_1326 [details] [associations]
symbol:GSU_1326 "ATP-dependent DNA helicase RecG"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR004609 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006281
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0006310
GO:GO:0004003 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K03655
ProtClustDB:PRK10917 TIGRFAMs:TIGR00643 HOGENOM:HOG000036618
RefSeq:NP_952379.2 GeneID:2688056 KEGG:gsu:GSU1326 PATRIC:22025427
BioCyc:GSUL243231:GH27-1321-MONOMER Uniprot:Q74DJ0
Length = 767
Score = 543 (196.2 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 128/381 (33%), Positives = 204/381 (53%)
Query: 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338
P+ T Q++ +++ D+ PM RL+ GDVG GKT VAL A V G Q ++A
Sbjct: 336 PFALTEAQRRVLAEIKADMMAPH-PMHRLVQGDVGCGKTLVALLAALVAVENGYQVAIMA 394
Query: 339 PTIVLAKQHFDVVSERFSKYPDIKVGLL-SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 397
PT +LA+QH+ + R+ + + V LL S + KA K L+ + G + I++GTH+++
Sbjct: 395 PTEILAEQHYLNI-HRWCEQLGVTVALLTSSLKGKA-KAGALERVARGEVQIVIGTHAVI 452
Query: 398 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 457
+V ++ LGL +VDE+ RFGV Q+ + + D+L ++ATPIPRTL + + G S
Sbjct: 453 QDKVEFHRLGLGIVDEQHRFGVLQRGLLRKKGENPDILVMTATPIPRTLAMTVFGDLSLS 512
Query: 458 LISTPPPERLPIKTHLSAFSKEK-VISAIKYELDRGGQVFYVLP--------RIKGLEEP 508
+I PP R P++T + S+ + V I+ E+ G Q + + P +K +
Sbjct: 513 VIDELPPGRTPVETKICTDSRRRQVYGIIRDEVAAGHQAYVIYPLVEESEKSELKAATQM 572
Query: 509 MDFL-QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ L FP + + + HG+ + E M F I IL+ T ++E G+D+ NA ++
Sbjct: 573 AEHLANDVFPDLRLGVLHGRMKPEEKEAVMRSFKGREIDILVSTTVIEVGIDVPNATVMV 632
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQ 627
++ ++FGL+QL+QLRGRVGR + L D+ LSD GF+
Sbjct: 633 IEHAERFGLSQLHQLRGRVGRGSATSRCILMASDR--LSDDGVKRLRVMESTT---DGFR 687
Query: 628 LAEKDMGIRGFGTIFGEQQTG 648
+AE D+ IRG G G +Q G
Sbjct: 688 IAEADLEIRGPGDFLGTRQAG 708
>UNIPROTKB|Q9KNM1 [details] [associations]
symbol:VC_2711 "ATP-dependent DNA helicase RecG"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0009378 "four-way junction
helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004365 InterPro:IPR004609 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF01336 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006281 GO:GO:0003676 GO:GO:0006310 GO:GO:0004003
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009378
KO:K03655 OMA:DRTRITP ProtClustDB:PRK10917 TIGRFAMs:TIGR00643
HSSP:Q9WY48 PIR:H82041 RefSeq:NP_232338.1 ProteinModelPortal:Q9KNM1
DNASU:2615539 GeneID:2615539 KEGG:vch:VC2711 PATRIC:20084440
Uniprot:Q9KNM1
Length = 692
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 136/403 (33%), Positives = 220/403 (54%)
Query: 263 PPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
P P + + AQ P+ PT Q++ ++E DL + PM RL+ GDVG GKT VA
Sbjct: 249 PLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLAKPH-PMMRLVQGDVGSGKTLVAAL 307
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLS-RFQSKAEKEEHLDM 381
A + G Q ++APT +LA+QH + ++ + I+VG L+ + + KA +E L
Sbjct: 308 AAVRAIEHGYQVALMAPTELLAEQHA-LNFAQWLEPMGIQVGWLAGKLKGKA-RETELAR 365
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK----EKIASFKISVDVLTL 437
I G + ++VGTH+L +V +++L L+++DE+ RFGV Q+ EK A L +
Sbjct: 366 IASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQGAYPHQLIM 425
Query: 438 SATPIPRTLYLALTGFRD--ASLISTPPPERLPIKT-HLSAFSKEKVISAIKYE-LDRGG 493
+ATPIPRTL A+T + D S+I PP R PI+T + +++++ I++ L+ G
Sbjct: 426 TATPIPRTL--AMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHACLNEGK 483
Query: 494 QVFYVLPRIKGLE--------EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAI 545
Q ++V I E E + LQ+ P V I + HG+ + + M+ F +
Sbjct: 484 QAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAFKNNEL 543
Query: 546 KILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLL 605
+L+ T ++E G+D+ NA+ +I+++ ++ GLAQL+QLRGRVGR +H L + + L
Sbjct: 544 HLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF--HAPL 601
Query: 606 SDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTG 648
S GF +A++D+ IRG G + G +QTG
Sbjct: 602 SK---TAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTG 641
>TIGR_CMR|VC_2711 [details] [associations]
symbol:VC_2711 "ATP-dependent DNA helicase RecG"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0009378 "four-way junction helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR004365
InterPro:IPR004609 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF01336 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0003676
GO:GO:0006310 GO:GO:0004003 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0009378 KO:K03655 OMA:DRTRITP ProtClustDB:PRK10917
TIGRFAMs:TIGR00643 HSSP:Q9WY48 PIR:H82041 RefSeq:NP_232338.1
ProteinModelPortal:Q9KNM1 DNASU:2615539 GeneID:2615539
KEGG:vch:VC2711 PATRIC:20084440 Uniprot:Q9KNM1
Length = 692
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 136/403 (33%), Positives = 220/403 (54%)
Query: 263 PPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
P P + + AQ P+ PT Q++ ++E DL + PM RL+ GDVG GKT VA
Sbjct: 249 PLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLAKPH-PMMRLVQGDVGSGKTLVAAL 307
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLS-RFQSKAEKEEHLDM 381
A + G Q ++APT +LA+QH + ++ + I+VG L+ + + KA +E L
Sbjct: 308 AAVRAIEHGYQVALMAPTELLAEQHA-LNFAQWLEPMGIQVGWLAGKLKGKA-RETELAR 365
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK----EKIASFKISVDVLTL 437
I G + ++VGTH+L +V +++L L+++DE+ RFGV Q+ EK A L +
Sbjct: 366 IASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELREKGAKQGAYPHQLIM 425
Query: 438 SATPIPRTLYLALTGFRD--ASLISTPPPERLPIKT-HLSAFSKEKVISAIKYE-LDRGG 493
+ATPIPRTL A+T + D S+I PP R PI+T + +++++ I++ L+ G
Sbjct: 426 TATPIPRTL--AMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHACLNEGK 483
Query: 494 QVFYVLPRIKGLE--------EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAI 545
Q ++V I E E + LQ+ P V I + HG+ + + M+ F +
Sbjct: 484 QAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAFKNNEL 543
Query: 546 KILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLL 605
+L+ T ++E G+D+ NA+ +I+++ ++ GLAQL+QLRGRVGR +H L + + L
Sbjct: 544 HLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLF--HAPL 601
Query: 606 SDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTG 648
S GF +A++D+ IRG G + G +QTG
Sbjct: 602 SK---TAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTG 641
>TAIR|locus:2049541 [details] [associations]
symbol:AT2G01440 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR001650 InterPro:IPR004609 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GO:GO:0006281 GO:GO:0003676
GO:GO:0006310 GO:GO:0004003 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K03655
TIGRFAMs:TIGR00643 IPI:IPI00538003 RefSeq:NP_178253.3
UniGene:At.69110 ProteinModelPortal:F4INA9 SMR:F4INA9 PRIDE:F4INA9
EnsemblPlants:AT2G01440.1 GeneID:814672 KEGG:ath:AT2G01440
OMA:MIIYNSE Uniprot:F4INA9
Length = 973
Score = 313 (115.2 bits), Expect = 2.7e-45, Sum P(2) = 2.7e-45
Identities = 75/235 (31%), Positives = 128/235 (54%)
Query: 426 ASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSK---EKVI 482
A ++ VL +SATPIPR+L LAL G + I+ P R+P++TH+ ++ ++V
Sbjct: 692 ADLSMAPHVLAMSATPIPRSLALALYGDISLTQITGMPLGRIPVETHIFEGNETGIKEVY 751
Query: 483 SAIKYELDRGGQVFYV---------LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQL 533
S + +L GG+V+ V LP+++ ++ + + FP + + HG+ S
Sbjct: 752 SMMLEDLKSGGRVYVVYPVIDQSEQLPQLRAASAELEIVTKKFPKYNCGLLHGRMKSDDK 811
Query: 534 EETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEA 593
EE + KF G +IL+ T ++E G+D+ +A+ ++V + ++FG+AQL+QLRGRVGR +++
Sbjct: 812 EEALNKFRSGETQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGTRKS 871
Query: 594 HAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIFGEQQTG 648
K LL GF LA D+ +RG G + G++Q+G
Sbjct: 872 --------KCLLVGSSTNSLKRLNMLGKSSDGFYLANIDLLLRGPGDLLGKKQSG 918
Score = 250 (93.1 bits), Expect = 2.7e-45, Sum P(2) = 2.7e-45
Identities = 60/171 (35%), Positives = 92/171 (53%)
Query: 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 333
F PY TP Q A ++ DL +R PM+RL+ GDVG GKT VA A V+ +G Q
Sbjct: 514 FLKALPYSLTPSQLSAVSEIIWDL-KRPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQ 572
Query: 334 AMVLAPTIVLAKQHFDVVSERFSKYPDIK----VGLLSRFQSKAEKEEHLDMIKHGHLNI 389
A +APT +LA QH++ + + +GLL+ + ++ G ++
Sbjct: 573 AAFMAPTELLAIQHYEQCRDLLENMEGVSSKPTIGLLTGSTPAKQSRMIRQDLQSGAISF 632
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSAT 440
I+GTHSL+ ++ Y+ L + VVDE+QRFGV Q+ K S +++ S +
Sbjct: 633 IIGTHSLIAEKIEYSALRIAVVDEQQRFGVIQRGKFNSKLYGTSMISKSGS 683
>UNIPROTKB|P64322 [details] [associations]
symbol:recG "ATP-dependent DNA helicase RecG" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001650 InterPro:IPR004609
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006310 GO:GO:0004003 EMBL:BX842581
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1200
KO:K03655 ProtClustDB:PRK10917 TIGRFAMs:TIGR00643 PIR:B70672
RefSeq:NP_217489.1 RefSeq:NP_337563.1 RefSeq:YP_006516428.1
ProteinModelPortal:P64322 SMR:P64322 PhosSite:P12061602
EnsemblBacteria:EBMYCT00000001827 EnsemblBacteria:EBMYCT00000069739
GeneID:13317769 GeneID:887439 GeneID:925224 KEGG:mtc:MT3051
KEGG:mtu:Rv2973c KEGG:mtv:RVBD_2973c PATRIC:18128470
TubercuList:Rv2973c HOGENOM:HOG000036618 OMA:PHVLTMT Uniprot:P64322
Length = 737
Score = 321 (118.1 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 92/257 (35%), Positives = 139/257 (54%)
Query: 265 YPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
+ N AE + P+E T Q++ LDV D P++RL+ G+VG GKT VA+ A+
Sbjct: 271 WKSNGLAAELLRRLPFELTAGQREV-LDVLSDGLAANRPLNRLLQGEVGSGKTIVAVLAM 329
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHF----DVVS------ERFSKYPDIKVGLLSRFQSKAE 374
+V AG Q +LAPT VLA QH DV+ + +V LL+ + +
Sbjct: 330 LQMVDAGYQCALLAPTEVLAAQHLRSIRDVLGPLAMGGQLGGAENATRVALLTGSMTAGQ 389
Query: 375 KEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKI---ASFKIS 431
K++ I G + I++GTH+LL V ++NLG++VVDE+ RFGV+Q++++ A I+
Sbjct: 390 KKQVRAEIASGQVGIVIGTHALLQEAVDFHNLGMVVVDEQHRFGVEQRDQLRAKAPAGIT 449
Query: 432 VDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVI------SAI 485
+L ++ATPIPRT+ L + G + S + P R PI T++ F K+K I
Sbjct: 450 PHLLVMTATPIPRTVALTVYGDLETSTLRELPLGRQPIATNV-IFVKDKPAWLDRAWRRI 508
Query: 486 KYELDRGGQVFYVLPRI 502
E G Q + V PRI
Sbjct: 509 IEEAAAGRQAYVVAPRI 525
Score = 182 (69.1 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 39/128 (30%), Positives = 65/128 (50%)
Query: 521 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 580
+A+ HG+ + + M F G + +L+CT ++E G+D+ NA ++V D +FG++QL+
Sbjct: 560 LALMHGRLSADDKDAAMAAFRAGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQLH 619
Query: 581 QLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGT 640
QLRGR+GR + + L S + GF LA+ D+ R G
Sbjct: 620 QLRGRIGRGEHPSVCLL----ASWVPPDTPAGQRLRAVAGTM-DGFALADLDLKERKEGD 674
Query: 641 IFGEQQTG 648
+ G Q+G
Sbjct: 675 VLGRNQSG 682
>TIGR_CMR|CJE_0514 [details] [associations]
symbol:CJE_0514 "ATP-dependent DNA helicase RecG"
species:195099 "Campylobacter jejuni RM1221" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000025
GenomeReviews:CP000025_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1200 KO:K03655
ProtClustDB:PRK10917 HOGENOM:HOG000036619 RefSeq:YP_178532.1
ProteinModelPortal:Q5HW03 STRING:Q5HW03 GeneID:3231275
KEGG:cjr:CJE0514 PATRIC:20042740 OMA:QALLYRE
BioCyc:CJEJ195099:GJC0-524-MONOMER Uniprot:Q5HW03
Length = 607
Score = 399 (145.5 bits), Expect = 1.6e-34, P = 1.6e-34
Identities = 133/428 (31%), Positives = 215/428 (50%)
Query: 243 IQKMVVDL--MELY--LHRLKQKRPPYPKNPA----IAEFAAQFPYEPTPDQKKAFLDVE 294
+Q DL +E+Y L RLK K+ + + IA + P+ T DQ A D+E
Sbjct: 179 LQNFSKDLKYIEIYNFLKRLKAKKTHFKAHQINVFNIANWLKDLPFSLTKDQLNALKDIE 238
Query: 295 RDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSER 354
+DL +E R+I GDVG GKT V L A V KQA+++APT +LA Q ++ +++
Sbjct: 239 KDLHSKEARR-RVIMGDVGCGKTLVLLGAALMVYP--KQAILMAPTSILAHQLYEE-AKK 294
Query: 355 FSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEE 414
F PD + +L K EK+ ++ K N+I+GTH+L+ + +N L+++DE+
Sbjct: 295 F--LPDF-MNILFIKGGKKEKDLEQNIQK---ANLIIGTHALI--HLESHNAVLVMIDEQ 346
Query: 415 QRFGVKQKEKIASF---KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKT 471
RFG Q+EKI S + + + SATPIPRTL + + + S I P ++ I T
Sbjct: 347 HRFGSAQREKIYSLSKQEFAPHFIQFSATPIPRTLSMIQSELLNFSFIKQMPFKK-DITT 405
Query: 472 H-LSAFSKEKVISAIKYELDRGGQVFYVLPRIKG--------LEEPMDFLQQAFPGVDIA 522
+ + K+ IK E+ + Q+ + P + LE+ ++ Q + V
Sbjct: 406 YCIQNEDFSKLSEKIKEEIAKNHQIIIIYPLVSASDNIPYLSLEQAKEYWQSHYEKV--F 463
Query: 523 IAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQL 582
+ HG+ +Q +E +E+F IL+ T +VE G+ + + I++ ++ GLA L+QL
Sbjct: 464 VTHGKD--KQKDEILERFRDEG-NILLSTTVVEVGISLPRLSMIVIVGAERLGLATLHQL 520
Query: 583 RGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRGFGTIF 642
RGRVGR ++ YL+ K + S GF++AE D+ R G +
Sbjct: 521 RGRVGRVGLKSTCYLYTKLKEIPSRLKEFASTL--------DGFKIAELDLKNRLSGDLL 572
Query: 643 -GEQQTGD 649
G Q G+
Sbjct: 573 DGFMQHGN 580
>UNIPROTKB|P17888 [details] [associations]
symbol:priA species:83333 "Escherichia coli K-12"
[GO:0006261 "DNA-dependent DNA replication" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IMP] [GO:0010332 "response
to gamma radiation" evidence=IMP] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0046677 "response to antibiotic"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IEA] [GO:0006260
"DNA replication" evidence=IMP] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006276 "plasmid maintenance"
evidence=IMP] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0006270 "DNA replication initiation"
evidence=IMP] [GO:0006268 "DNA unwinding involved in replication"
evidence=IDA] InterPro:IPR001650 InterPro:IPR005259
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0046677 GO:GO:0010332 GO:GO:0006270
GO:GO:0006310 GO:GO:0006302 EMBL:L19201 GO:GO:0006276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
EMBL:M33293 GO:GO:0030894 GO:GO:0006269 GO:GO:0006268 EMBL:D00616
PIR:S40878 RefSeq:NP_418370.1 RefSeq:YP_491516.1 PDB:2D7E PDB:2D7G
PDB:2D7H PDB:2DWL PDB:2DWM PDB:2DWN PDBsum:2D7E PDBsum:2D7G
PDBsum:2D7H PDBsum:2DWL PDBsum:2DWM PDBsum:2DWN
ProteinModelPortal:P17888 SMR:P17888 DIP:DIP-10562N IntAct:P17888
MINT:MINT-1274231 EnsemblBacteria:EBESCT00000004327
EnsemblBacteria:EBESCT00000015979 GeneID:12933657 GeneID:948426
KEGG:ecj:Y75_p3252 KEGG:eco:b3935 PATRIC:32123387 EchoBASE:EB0756
EcoGene:EG10763 eggNOG:COG1198 HOGENOM:HOG000037413 KO:K04066
OMA:ERQTMQL ProtClustDB:PRK05580 BioCyc:EcoCyc:EG10763-MONOMER
BioCyc:ECOL316407:JW3906-MONOMER BioCyc:MetaCyc:EG10763-MONOMER
EvolutionaryTrace:P17888 Genevestigator:P17888 TIGRFAMs:TIGR00595
Uniprot:P17888
Length = 732
Score = 148 (57.2 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 43/117 (36%), Positives = 63/117 (53%)
Query: 307 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLL 366
L+ G G GKTEV L + V++ GKQA+V+ P I L Q ERF+ P V +L
Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQTIARFRERFNA-P---VEVL 276
Query: 367 SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE 423
+ +E+ K+G I++GT S L + + NLG++V+DEE KQ+E
Sbjct: 277 HSGLNDSERLSAWLKAKNGEAAIVIGTRSALFTP--FKNLGVIVIDEEHDSSYKQQE 331
Score = 94 (38.1 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 37/124 (29%), Positives = 57/124 (45%)
Query: 497 YVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQ--LEETMEKFAQGAIKILICTNIV 554
+++P G E+ L FPGV I+ SR+ LE+ + + +G +ILI T ++
Sbjct: 483 HLVPVGLGTEQLEQTLAPLFPGVPISRIDRDTTSRKGALEQQLAEVHRGGARILIGTQML 542
Query: 555 ESGLDIQNANTIIVQDVQQ--FG--------LAQLY-QLRGRVGRADKEAHAYL--FYPD 601
G + + + DV F AQLY Q+ GR GRA K+ L +P+
Sbjct: 543 AKGHHFPDVTLVALLDVDGALFSADFRSAERFAQLYTQVAGRAGRAGKQGEVVLQTHHPE 602
Query: 602 KSLL 605
LL
Sbjct: 603 HPLL 606
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 179 (68.1 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 95/347 (27%), Positives = 157/347 (45%)
Query: 282 PTPDQKKAF-LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL--A 338
PTP QK+A L +E + P G GKT L + + GK+A VL
Sbjct: 25 PTPIQKEAIPLILEGHNLVGQAP--------TGTGKTAAYLLPVLQRIQRGKKAQVLIVT 76
Query: 339 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL- 397
PT LA Q D V+ + KY +KV L+ + +A E + ++ G + +IVGT +
Sbjct: 77 PTRELALQVADEVA-KLGKY--LKVRALAVYGGQAI-ERQIRGLRQG-VEVIVGTPGRIL 131
Query: 398 ---GSRVV-YNNLGLLVVDEEQRF---G-VKQKEKIASFKIS-VDVLTLSAT-PIP-RTL 446
G + + ++++DE G + E I + + L SAT P P +T+
Sbjct: 132 DHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAPIKTI 191
Query: 447 YLA-LTGFRDASLIS---TPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFY-VLP 500
L G++ L+ T P R + L K E ++S + EL VF
Sbjct: 192 IKKFLGGYKTVKLVGREKTVPAIR-QVYYELPETEKIEGLVSILNSELPIQAIVFCRTKK 250
Query: 501 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
R+ + E ++F A G+ HG R+ +T++ F G ++L+ T++ GLDI
Sbjct: 251 RVDEVVEQLNFRGYAAKGL-----HGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDI 305
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLF--YPDKSLL 605
+ + +I D+ Q + ++++ GR GRA +E A Y ++ LL
Sbjct: 306 PDVSHVINFDIPQNPESYIHRI-GRTGRAGREGKAITLINYRERKLL 351
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 179 (68.1 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 95/347 (27%), Positives = 157/347 (45%)
Query: 282 PTPDQKKAF-LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL--A 338
PTP QK+A L +E + P G GKT L + + GK+A VL
Sbjct: 25 PTPIQKEAIPLILEGHNLVGQAP--------TGTGKTAAYLLPVLQRIQRGKKAQVLIVT 76
Query: 339 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL- 397
PT LA Q D V+ + KY +KV L+ + +A E + ++ G + +IVGT +
Sbjct: 77 PTRELALQVADEVA-KLGKY--LKVRALAVYGGQAI-ERQIRGLRQG-VEVIVGTPGRIL 131
Query: 398 ---GSRVV-YNNLGLLVVDEEQRF---G-VKQKEKIASFKIS-VDVLTLSAT-PIP-RTL 446
G + + ++++DE G + E I + + L SAT P P +T+
Sbjct: 132 DHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAPIKTI 191
Query: 447 YLA-LTGFRDASLIS---TPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFY-VLP 500
L G++ L+ T P R + L K E ++S + EL VF
Sbjct: 192 IKKFLGGYKTVKLVGREKTVPAIR-QVYYELPETEKIEGLVSILNSELPIQAIVFCRTKK 250
Query: 501 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
R+ + E ++F A G+ HG R+ +T++ F G ++L+ T++ GLDI
Sbjct: 251 RVDEVVEQLNFRGYAAKGL-----HGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDI 305
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLF--YPDKSLL 605
+ + +I D+ Q + ++++ GR GRA +E A Y ++ LL
Sbjct: 306 PDVSHVINFDIPQNPESYIHRI-GRTGRAGREGKAITLINYRERKLL 351
>TIGR_CMR|BA_4006 [details] [associations]
symbol:BA_4006 "primosomal protein N`" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003678 "DNA helicase activity" evidence=ISS]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=ISS] InterPro:IPR001650 InterPro:IPR005259
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006260
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K04066 ProtClustDB:PRK05580 TIGRFAMs:TIGR00595
HOGENOM:HOG000037414 RefSeq:NP_846248.1 RefSeq:YP_020647.1
RefSeq:YP_029970.1 ProteinModelPortal:Q81WH0
EnsemblBacteria:EBBACT00000009040 EnsemblBacteria:EBBACT00000018297
EnsemblBacteria:EBBACT00000023629 GeneID:1086752 GeneID:2816205
GeneID:2852978 KEGG:ban:BA_4006 KEGG:bar:GBAA_4006 KEGG:bat:BAS3719
OMA:TRKKGAH BioCyc:BANT260799:GJAJ-3777-MONOMER
BioCyc:BANT261594:GJ7F-3894-MONOMER Uniprot:Q81WH0
Length = 801
Score = 178 (67.7 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 51/158 (32%), Positives = 78/158 (49%)
Query: 267 KNPAIAE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
+NP E F P+ T +QK+ + +T ET L+ G G GKTEV L++I
Sbjct: 249 RNPYDDEDFEQTKPFPLTEEQKQVITPILSSITN-ETYNPFLLYGVTGSGKTEVYLQSIA 307
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
V+ GK+A+VL P I L Q D RF +V +L S EK + I
Sbjct: 308 AVLEKGKEAIVLVPEIALTPQMVDRFKGRFGS----QVAVLHSALSVGEKYDEWRKILRK 363
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE 423
+ ++VG S + + + NLG++++DEE KQ++
Sbjct: 364 EVKVVVGARSAVFAP--FENLGIIIIDEEHESSYKQED 399
Score = 43 (20.2 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 17/66 (25%), Positives = 30/66 (45%)
Query: 534 EETMEKFAQGAIKILICTNIVESGLDIQNANTI--IVQDVQ----QFGLAQ-LYQLRGRV 586
E+ ++ F + IL+ T ++ GLD + + D F ++ YQL +V
Sbjct: 593 EKLLKAFGEEKADILLGTQMIAKGLDFPKVTLVGVLTADTMLHLPDFRASEKTYQLLTQV 652
Query: 587 -GRADK 591
GRA +
Sbjct: 653 SGRAGR 658
Score = 41 (19.5 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 666 LSKVDEHCVISVPYKSVQIDININPRL 692
L V+EH + K +QI I+ NP +
Sbjct: 774 LKMVNEHYQAEMQ-KELQISIDFNPTM 799
Score = 41 (19.5 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 22/101 (21%), Positives = 45/101 (44%)
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP E I P E K + D++ + RQY PY +L+ + +
Sbjct: 661 LPGEVIIQTYTPEHYSIELAKNQQYDVFFDQEMQMRRTRQY--PPYYYVVLVTVSHPELL 718
Query: 752 AADIGITKIYASGKMVG-MKTNMNKKVFKMMIDSMTSEVHR 791
A + +T+ K+VG ++++ +++ M++ + S + R
Sbjct: 719 KA-VQVTE-----KIVGHLRSHCSQQT--MVLGPVASAIPR 751
>FB|FBgn0036754 [details] [associations]
symbol:CG5589 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00550000074863 KO:K14779 OMA:NVMKQSG
RefSeq:NP_649009.1 ProteinModelPortal:Q9VVK8 SMR:Q9VVK8
STRING:Q9VVK8 PRIDE:Q9VVK8 EnsemblMetazoa:FBtr0075170 GeneID:39979
KEGG:dme:Dmel_CG5589 UCSC:CG5589-RA FlyBase:FBgn0036754
InParanoid:Q9VVK8 OrthoDB:EOG4QBZMN PhylomeDB:Q9VVK8
GenomeRNAi:39979 NextBio:816380 Bgee:Q9VVK8 Uniprot:Q9VVK8
Length = 594
Score = 167 (63.8 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 88/346 (25%), Positives = 158/346 (45%)
Query: 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVL 337
PTP Q +A L V L +R M C G GKT L I + A G +A+VL
Sbjct: 142 PTPIQMQA-LPV---LLQRRALM---ACAPTGSGKTLAFLTPIINGLRAHKTTGLRALVL 194
Query: 338 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS-- 395
APT LA+Q + +E ++ ++ +S+ S+A K++H K + +I+V T +
Sbjct: 195 APTRELAQQIYRECAE-LTRETGLRTHFISKV-SEA-KQKHGAECKQRY-DILVSTPNRV 250
Query: 396 --LLGSR---VVYNNLGLLVVDEEQRFGVKQKEKIASFKISVD-VLTLSATPIPRTLYLA 449
LL + +++ V+DE R +E +FK +D + + P + +
Sbjct: 251 RFLLQQEPPLLDLSHVEWFVLDEADRL---MEEGQNNFKEQLDDIYAACSNPTKCVAFFS 307
Query: 450 LT---GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK-GL 505
T +L R+ I SA E V + + GG++ + ++ GL
Sbjct: 308 ATYTVPVAKWALRHLKNLVRITIGVQNSA--TETVQQELLFVGSEGGKLVAIRDLVRQGL 365
Query: 506 EEP-MDFLQ------QAFP-----GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI 553
+ P + F+Q Q F G+++ + H ++ Q + ++ F +G+I +LICT +
Sbjct: 366 QPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGSIWVLICTEL 425
Query: 554 VESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY 599
+ G+D + N +I D ++ ++++ GR GRA + A F+
Sbjct: 426 MGRGIDFKGVNLVINYDFPPTTISYIHRI-GRTGRAGRPGRAITFF 470
>UNIPROTKB|Q9KNQ3 [details] [associations]
symbol:VC_2678 "Primosomal protein N`" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=ISS] [GO:0032508 "DNA duplex unwinding"
evidence=ISS] InterPro:IPR001650 InterPro:IPR005259
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0008026 GO:GO:0006269 KO:K04066
ProtClustDB:PRK05580 TIGRFAMs:TIGR00595 OMA:RMTVHQR PIR:A82047
RefSeq:NP_232306.1 ProteinModelPortal:Q9KNQ3 DNASU:2615506
GeneID:2615506 KEGG:vch:VC2678 PATRIC:20084374 Uniprot:Q9KNQ3
Length = 734
Score = 143 (55.4 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 58/213 (27%), Positives = 96/213 (45%)
Query: 307 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLL 366
L+ G G GKTEV L I V++ G+QA+VL P I L Q + +RF+ + V ++
Sbjct: 222 LLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIGLTPQTINRFRQRFN----VPVEVM 277
Query: 367 SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEK-- 424
+ E+ + I++GT S L + LG+++VDEE KQ++
Sbjct: 278 HSALNDTERLNAWLAARDKVAGIVIGTRSAL--LTPFAKLGIIIVDEEHDSSYKQQDSLR 335
Query: 425 -----IASFKISVDVLTL---SATPIPRTLYLALTGFRDASLISTPPPERLPIKTH---- 472
+A + ++ + + SATP TL+ AL+G ++ LP + H
Sbjct: 336 YHARDVAVMRAHLENIPIVLGSATPALETLHNALSGKYHHLQLTQRAGNALPTRNHALDV 395
Query: 473 ----LSAFSKEKVISAIKYELDRGGQVFYVLPR 501
L + +I+ ++ L G QV L R
Sbjct: 396 KGLYLESGLSAPLIAEMRRHLSAGNQVMLFLNR 428
Score = 70 (29.7 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 27/86 (31%), Positives = 39/86 (45%)
Query: 533 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ------QFG----LAQLY-Q 581
LE + +G +ILI T ++ G + + + DV F LAQL+ Q
Sbjct: 522 LESALTAIRKGEYQILIGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQ 581
Query: 582 LRGRVGRADKEAHAYL--FYPDKSLL 605
+ GR GRA K L +P+ SLL
Sbjct: 582 VAGRAGRASKPGEVVLQTHHPEHSLL 607
>TIGR_CMR|VC_2678 [details] [associations]
symbol:VC_2678 "primosomal protein N`" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=ISS]
InterPro:IPR001650 InterPro:IPR005259 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0008026 GO:GO:0006269 KO:K04066 ProtClustDB:PRK05580
TIGRFAMs:TIGR00595 OMA:RMTVHQR PIR:A82047 RefSeq:NP_232306.1
ProteinModelPortal:Q9KNQ3 DNASU:2615506 GeneID:2615506
KEGG:vch:VC2678 PATRIC:20084374 Uniprot:Q9KNQ3
Length = 734
Score = 143 (55.4 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 58/213 (27%), Positives = 96/213 (45%)
Query: 307 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLL 366
L+ G G GKTEV L I V++ G+QA+VL P I L Q + +RF+ + V ++
Sbjct: 222 LLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIGLTPQTINRFRQRFN----VPVEVM 277
Query: 367 SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEK-- 424
+ E+ + I++GT S L + LG+++VDEE KQ++
Sbjct: 278 HSALNDTERLNAWLAARDKVAGIVIGTRSAL--LTPFAKLGIIIVDEEHDSSYKQQDSLR 335
Query: 425 -----IASFKISVDVLTL---SATPIPRTLYLALTGFRDASLISTPPPERLPIKTH---- 472
+A + ++ + + SATP TL+ AL+G ++ LP + H
Sbjct: 336 YHARDVAVMRAHLENIPIVLGSATPALETLHNALSGKYHHLQLTQRAGNALPTRNHALDV 395
Query: 473 ----LSAFSKEKVISAIKYELDRGGQVFYVLPR 501
L + +I+ ++ L G QV L R
Sbjct: 396 KGLYLESGLSAPLIAEMRRHLSAGNQVMLFLNR 428
Score = 70 (29.7 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 27/86 (31%), Positives = 39/86 (45%)
Query: 533 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ------QFG----LAQLY-Q 581
LE + +G +ILI T ++ G + + + DV F LAQL+ Q
Sbjct: 522 LESALTAIRKGEYQILIGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQ 581
Query: 582 LRGRVGRADKEAHAYL--FYPDKSLL 605
+ GR GRA K L +P+ SLL
Sbjct: 582 VAGRAGRASKPGEVVLQTHHPEHSLL 607
>TIGR_CMR|SPO_3127 [details] [associations]
symbol:SPO_3127 "primosomal protein N'" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0003688 "DNA replication origin binding"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001650 InterPro:IPR005259 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006260
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000037413 KO:K04066 ProtClustDB:PRK05580
TIGRFAMs:TIGR00595 OMA:RNWASIA RefSeq:YP_168330.1
ProteinModelPortal:Q5LNS6 GeneID:3196031 KEGG:sil:SPO3127
PATRIC:23379699 Uniprot:Q5LNS6
Length = 736
Score = 135 (52.6 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 39/120 (32%), Positives = 59/120 (49%)
Query: 307 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP-DIKVGL 365
L+ G G GKTEV L A+ + G+QA+VL P I L + V RF P + G
Sbjct: 226 LLKGVTGAGKTEVYLEAVAEALRMGRQALVLLPEIALTAEFLSRVEARFGARPAEWHSGA 285
Query: 366 LSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKI 425
+ E+ M+ G ++VG S L + + +LGL++VDEE KQ++ +
Sbjct: 286 -----TMTERRRVWRMVGQGAAQLVVGARSALF--LPFRDLGLIIVDEEHDTSYKQEDGV 338
Score = 76 (31.8 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 33/118 (27%), Positives = 51/118 (43%)
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQY--SRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
G+E + +FP IA+ + +R L+E +E A G I+I T +V G +
Sbjct: 498 GIERLAEEATASFPEARIAVLSSDMFGTARALKERIEAIAAGEADIVIGTQLVAKGHNFP 557
Query: 562 NANTIIVQDVQQFGLA-----------QLY-QLRGRVGRADKEAHAYL--FYPDKSLL 605
+ V D GL QL Q+ GR GRA+K A L + P+ ++
Sbjct: 558 LLTLVGVIDAD-LGLQGSDLRAAERTFQLMRQVAGRAGRAEKPGQALLQTYQPEHPVI 614
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 156 (60.0 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 78/312 (25%), Positives = 134/312 (42%)
Query: 310 GDVGFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLL 366
G G GKT + ++ + QA+VL PT LA Q + +IKV L
Sbjct: 48 GKTGSGKTAAFGLGVLSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTL 107
Query: 367 SRFQSKAEKEEHLDMIKHGHLNIIVGTHS-----LLGSRVVYNNLGLLVVDEEQRF---G 418
+ + ++HG +I+VGT L R+ + L LV+DE R G
Sbjct: 108 CGGMPMGPQ---IGSLEHG-AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMG 163
Query: 419 VKQKEK--IASFKISVDVLTLSATPIPRTL-YLALTGFRDASLIS------TPPPERLPI 469
++ + IA+ L SAT P ++ +A + R+A +I T +
Sbjct: 164 FQEALEAIIAAAPAERQTLLFSAT-YPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFY 222
Query: 470 KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 529
K SA E + + + + VF R ++ D L Q+ G + HG
Sbjct: 223 KVEGSAARDEALETLLLHHQPTSSVVFCNTKR--EVQNVADALHQS--GFSVIELHGDME 278
Query: 530 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 589
R+ ++ + +FA +I IL+ T++ GLD+ N + + D+ + ++++ GR GRA
Sbjct: 279 QRERDQALVQFANKSISILVATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRI-GRTGRA 337
Query: 590 DKEAHAYLFYPD 601
+ A+ F+ D
Sbjct: 338 GSKGLAFSFFSD 349
>TIGR_CMR|SO_4122 [details] [associations]
symbol:SO_4122 "primosomal protein N'" species:211586
"Shewanella oneidensis MR-1" [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0003688 "DNA replication origin binding"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001650 InterPro:IPR005259 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000037413 KO:K04066
TIGRFAMs:TIGR00595 OMA:RMTVHQR RefSeq:NP_719651.1
ProteinModelPortal:Q8E9Y8 GeneID:1171735 KEGG:son:SO_4122
PATRIC:23527886 ProtClustDB:CLSK907505 Uniprot:Q8E9Y8
Length = 737
Score = 145 (56.1 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 69/249 (27%), Positives = 112/249 (44%)
Query: 273 EFAAQFPYEPTPDQ--KKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
++ +Q + TP + K+ + V LT+++ L+ G G GKTEV L + ++
Sbjct: 194 DWRSQLELDETPHRLNKEQAVAVTV-LTQQQGYHCTLLEGITGSGKTEVYLALLEHILKQ 252
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQA++L P I L Q + RF + V +L + ++ E + G II
Sbjct: 253 GKQALILVPEIGLTPQTINRFKRRFR----VNVAVLHSGLTDNQRLEAWRQARCGQAAII 308
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIA----SFKI------SVDVLTLSAT 440
+GT S L + + + G++++DEE KQ+E + + S+ V+ SAT
Sbjct: 309 IGTRSALFTPMAFP--GVIILDEEHDSSFKQQEGVGYHARDLAVMRGHLESIPVVLGSAT 366
Query: 441 PIPRTLYLALTG-FRDASL---ISTPPPER---LPIKT-HLSAFSKEKVISAIKYELDRG 492
P +L AL+G + L R + IK L A +I+ I+ LD G
Sbjct: 367 PSLESLQNALSGRYHHLQLGERAGNAKKVRQGIIDIKNLPLKAGMSAPLINEIRSHLDAG 426
Query: 493 GQVFYVLPR 501
QV L R
Sbjct: 427 NQVLLFLNR 435
Score = 63 (27.2 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 29/104 (27%), Positives = 47/104 (45%)
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSR---QLEETMEKFAQGAIKILICTNIVESGLDI 560
G E+ + LQ FP + + + +R LE + +G KIL+ T ++ G
Sbjct: 498 GTEQLAEALQLEFPKYPV-VRIDRDTTRLKGSLESHLSAIHKGEYKILVGTQMLAKGHHF 556
Query: 561 QNANTIIVQDV------------QQFGLAQLY-QLRGRVGRADK 591
+ + + DV ++FG QLY Q+ GR GRA+K
Sbjct: 557 PDVTLVGLLDVDGALFSADFRAPERFG--QLYTQVAGRAGRANK 598
>TIGR_CMR|CJE_0782 [details] [associations]
symbol:CJE_0782 "primosomal protein N'" species:195099
"Campylobacter jejuni RM1221" [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0003688 "DNA replication origin binding"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001650 InterPro:IPR005259 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:CP000025
GenomeReviews:CP000025_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1198 KO:K04066
ProtClustDB:PRK05580 TIGRFAMs:TIGR00595 HOGENOM:HOG000037414
RefSeq:YP_178788.1 ProteinModelPortal:Q5HV97 STRING:Q5HV97
GeneID:3230734 KEGG:cjr:CJE0782 PATRIC:20043313 OMA:WHSKITK
BioCyc:CJEJ195099:GJC0-798-MONOMER Uniprot:Q5HV97
Length = 617
Score = 137 (53.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 48/151 (31%), Positives = 72/151 (47%)
Query: 307 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLL 366
L+ D G GKTE+ + I + GKQA++L P I L Q + +R Y L
Sbjct: 134 LLFADTGSGKTEIYISLIKECLEQGKQALLLMPEIALTPQ----MQKRLEVYFKDNFFLW 189
Query: 367 SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEK-- 424
SK +K+E+L+ G + ++ G S L + + NLGL+VVDEE K +
Sbjct: 190 HSKISKKKKQEYLERFCKGEVLLVAGARSALF--LPFRNLGLIVVDEEHDNSYKASNQPF 247
Query: 425 -----IASF---KISVDVLTLSATPIPRTLY 447
+A F K ++ V+ SATP + Y
Sbjct: 248 INARDLALFLGQKNNIKVVLGSATPSLTSFY 278
Score = 67 (28.6 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 28/110 (25%), Positives = 48/110 (43%)
Query: 501 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYS--RQLEETMEKFAQGAIKILICTNIVESGL 558
R G E ++ LQ A P IA + + ++L ++ F + I ILI T+++ G
Sbjct: 389 RKMGTAELLELLQNALPLAKIAKFDSDEITSVKKLNTILKDFNENKIDILIGTSMLAKGH 448
Query: 559 DIQNANTIIVQDVQQF-----------GLAQLYQLRGRVGRADKEAHAYL 597
D + + ++ + ++ LA Q+ GR GR EA L
Sbjct: 449 DYHSVDLSVILGLDEYLLRPSFRASEETLALAMQVAGRAGRKG-EARVLL 497
>POMBASE|SPAC22F3.08c [details] [associations]
symbol:rok1 "ATP-dependent RNA helicase Rok1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC22F3.08c GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000242486 KO:K14779
PIR:T38183 RefSeq:NP_593033.1 ProteinModelPortal:Q09775
STRING:Q09775 EnsemblFungi:SPAC22F3.08c.1 GeneID:2541786
KEGG:spo:SPAC22F3.08c OMA:ERESINT OrthoDB:EOG425926
NextBio:20802875 Uniprot:Q09775
Length = 481
Score = 153 (58.9 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 81/321 (25%), Positives = 138/321 (42%)
Query: 305 DRLICGDVGFGKTEVALRAIF----CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 360
D L C G GKT L I V G +A+++APT L +Q + +E+ S
Sbjct: 85 DLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQ-AEKLSFGTS 143
Query: 361 IKVGLLSR----FQSKAEK-EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQ 415
+K+ LS+ Q KA K E DM + ++ + L + + V+DE
Sbjct: 144 LKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQTGLS----FEKVEFFVMDEAD 199
Query: 416 RF---G-VKQKEKIASFKISVDVL-TLSATPIP-RTLYLA----------LTGFRDASLI 459
R G ++Q + I S S ++ +L + IP R LA + G +DA+
Sbjct: 200 RLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIRIIVGLKDAATD 259
Query: 460 STPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD-FLQQAFPG 518
S +RL L S I ++ + G V+ ++ +E + + F
Sbjct: 260 SID--QRL-----LFVGSDTSKIVILRQMISNGELKPRVVIFVQDIERAKALYTELLFDE 312
Query: 519 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 578
+ + + HG+ + EE + KF +G I +LI T+++ G+D +I D Q +
Sbjct: 313 IHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSY 372
Query: 579 LYQLRGRVGRADKEAHAYLFY 599
++++ GR GRA A F+
Sbjct: 373 IHRI-GRTGRAGNTGQAVTFF 392
>TIGR_CMR|DET_0337 [details] [associations]
symbol:DET_0337 "primosomal protein N'" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0003688 "DNA replication origin
binding" evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001650 InterPro:IPR005259 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:CP000027
GenomeReviews:CP000027_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1198 KO:K04066
TIGRFAMs:TIGR00595 HOGENOM:HOG000037414 RefSeq:YP_181084.1
ProteinModelPortal:Q3Z9L5 STRING:Q3Z9L5 GeneID:3230382
KEGG:det:DET0337 PATRIC:21607743 OMA:VLANHEQ ProtClustDB:CLSK935638
BioCyc:DETH243164:GJNF-337-MONOMER Uniprot:Q3Z9L5
Length = 815
Score = 156 (60.0 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 63/233 (27%), Positives = 115/233 (49%)
Query: 281 EPTPDQKKAFLDVERDLT----ERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 336
E +P QKK + R L + + P L+ G G GKTE+ L+A+ + GK+A+V
Sbjct: 276 ELSPPQKKCLEFITRSLNTPPEDDQNPRTFLLHGITGSGKTEIYLQALAESLRLGKKAIV 335
Query: 337 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 396
L P I L Q ++ ++P ++ +L S E+ + IK+G +I++G S
Sbjct: 336 LVPEISLTPQ---TIARFAGRFPG-QIAVLHSRLSPGEQFDEWQRIKNGQADIVIGPRSA 391
Query: 397 LGSRVVYNNLGLLVVDEEQRFGVKQKE-------KIASFKISVD---VLTL-SATPIPRT 445
L + + + G++++DEE + KQ++ + + K++ + VL L SATP +
Sbjct: 392 LFAPL--DKPGIIIIDEEHEWTYKQQDPQPRYHTRTVANKMAEEYGAVLVLGSATPDVDS 449
Query: 446 LYLALTGFRDASLISTPPPERL-PIKTHLSAFSKEKVISAIKYELDRGGQVFY 497
+ A G L+ P ERL P + ++ K +++ ++ EL G + +
Sbjct: 450 YFKAQKGIYQ--LLELP--ERLTPYRG--ASLPKTELVD-MRTELSEGNRSIF 495
Score = 49 (22.3 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 534 EETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
++ M++F+ ILI T +V GLD+ + +
Sbjct: 614 QQIMDRFSCHQADILIGTQMVAKGLDLPDVTLV 646
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 152 (58.6 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 81/316 (25%), Positives = 136/316 (43%)
Query: 313 GFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRF 369
G GKT A+ + K Q+MV+ PT LA Q + + +IK+ L
Sbjct: 57 GSGKTAAFGLALLNKLEVKKFRIQSMVICPTRELADQVAKELRKLARGIHNIKILTLC-- 114
Query: 370 QSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV-----YNNLGLLVVDEEQRFGVKQKEK 424
+ ++HG ++IVGT L V+ +NL LLV+DE R E
Sbjct: 115 -GGTPFGPQIGSLEHG-AHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRM----LEM 168
Query: 425 IASFKISVDVLTLSATPIPRTLYLALTGFRDA------SLISTPPPERLPIKTHLSAFSK 478
F+ ++D + + TP+ R L F D S+++ P ++ S S+
Sbjct: 169 --GFQAALDNI-VGRTPLDRQTLLFSATFPDQIKSISESIMTDPVMVKIASSEDQSTISQ 225
Query: 479 E--KV------ISAIKYELDRGGQV----FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHG 526
+ KV + A++ L G QV + + K ++ D L F G + HG
Sbjct: 226 KFFKVGNDDDRLDALRLLL-LGNQVESTAIFCNTK-KETQQVADALH--FDGFSVLALHG 281
Query: 527 QQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRV 586
R ++T+ +FA + IL+ T++ GLDI + + +I + + ++++ GR
Sbjct: 282 DLEQRDRDQTLLRFANKSASILVATDVAARGLDIDSLDLVINYHIARDSEVHVHRI-GRT 340
Query: 587 GRADKEAHAYLFYPDK 602
GRA AY + DK
Sbjct: 341 GRAGSTGIAYSLFSDK 356
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 152 (58.6 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 81/316 (25%), Positives = 136/316 (43%)
Query: 313 GFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRF 369
G GKT A+ + K Q+MV+ PT LA Q + + +IK+ L
Sbjct: 57 GSGKTAAFGLALLNKLEVKKFRIQSMVICPTRELADQVAKELRKLARGIHNIKILTLC-- 114
Query: 370 QSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV-----YNNLGLLVVDEEQRFGVKQKEK 424
+ ++HG ++IVGT L V+ +NL LLV+DE R E
Sbjct: 115 -GGTPFGPQIGSLEHG-AHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRM----LEM 168
Query: 425 IASFKISVDVLTLSATPIPRTLYLALTGFRDA------SLISTPPPERLPIKTHLSAFSK 478
F+ ++D + + TP+ R L F D S+++ P ++ S S+
Sbjct: 169 --GFQAALDNI-VGRTPLDRQTLLFSATFPDQIKSISESIMTDPVMVKIASSEDQSTISQ 225
Query: 479 E--KV------ISAIKYELDRGGQV----FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHG 526
+ KV + A++ L G QV + + K ++ D L F G + HG
Sbjct: 226 KFFKVGNDDDRLDALRLLL-LGNQVESTAIFCNTK-KETQQVADALH--FDGFSVLALHG 281
Query: 527 QQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRV 586
R ++T+ +FA + IL+ T++ GLDI + + +I + + ++++ GR
Sbjct: 282 DLEQRDRDQTLLRFANKSASILVATDVAARGLDIDSLDLVINYHIARDSEVHVHRI-GRT 340
Query: 587 GRADKEAHAYLFYPDK 602
GRA AY + DK
Sbjct: 341 GRAGSTGIAYSLFSDK 356
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 151 (58.2 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 76/278 (27%), Positives = 123/278 (44%)
Query: 333 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392
+A++L PT LA Q D + + FS+Y IK G++ A + + M+K G L+++V
Sbjct: 93 RALILTPTRELANQVADNIKQ-FSQYLPIKSGVVYGGGKMASQTK---MLKQG-LDVLVA 147
Query: 393 THSLLGSRVVYNNLGL-----LVVDEEQRF---G-VKQKEKIA-SFKISVDVLTLSATPI 442
T L + N+ L LV+DE R G + EK+ + K L SAT
Sbjct: 148 TPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLLLAVKHKHQTLMFSATFS 207
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAF--SKEKVISAIKYELDRGGQVFYVLP 500
R LA + IS K + + ++E+ + EL VL
Sbjct: 208 DRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTEERKRELLS-ELIGVNNWQQVLV 266
Query: 501 RIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558
G +E + L + G+ A+ HG + + +E+F++G +++L+ T++ GL
Sbjct: 267 -FAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQFSEGKVRVLVATDVAARGL 325
Query: 559 DIQNANTIIVQDVQQFGLAQLYQLR-GRVGRADKEAHA 595
DI + +V F L + Y R GR GRA K A
Sbjct: 326 DIPDL-AFVVNFHLPF-LPEDYVHRVGRTGRAGKSGTA 361
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 151 (58.2 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 78/316 (24%), Positives = 137/316 (43%)
Query: 313 GFGKTE---VALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRF 369
G GKT + L + +S QA+VL PT LA Q + R +++ D + +L+
Sbjct: 51 GSGKTAAFGIGLLSRLDALSFRVQALVLCPTRELADQVGKEL-RRLARFTD-NIKILT-I 107
Query: 370 QSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL-----LVVDEEQRFGVKQKEK 424
L ++HG ++++GT L + +L L LV+DE R
Sbjct: 108 CGGVPFGPQLGSLEHG-AHVVIGTPGRLLDHLRRGSLDLSALRTLVLDEADRM------L 160
Query: 425 IASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISA 484
F+ + L +A P +TL + T + D+ + +R P++ + E I
Sbjct: 161 DMGFQDDISALIAAAPPKRQTLLFSAT-YPDSIAAMSAGVQREPVEVSVDEVHGEGAIEQ 219
Query: 485 IKYELDRGGQVFYVLPRIKGLEEPMDFL---------QQAFPGVDI----AIA-HGQQYS 530
+ YE+D GQ + RI G P L Q+ + + A+A HG
Sbjct: 220 VFYEVD-SGQRIEAVERILGHYRPESALIFCNTKLECQEVANALAVRGYAALAIHGDLDQ 278
Query: 531 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 590
R+ + + +FA + +L+ T++ GLDI+ + +I ++ + +++ GR GRA
Sbjct: 279 RERDRVLVRFANRSASVLVATDVAARGLDIKELSAVINYELTRNPEVHTHRI-GRTGRAG 337
Query: 591 KEAHAY-LFYPDKSLL 605
+ A L P +S L
Sbjct: 338 ERGLAVSLVTPRESRL 353
>DICTYBASE|DDB_G0274325 [details] [associations]
symbol:ddx52 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274325 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0003723
EMBL:AAFI02000012 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14779 RefSeq:XP_643949.1
ProteinModelPortal:Q86IZ9 EnsemblProtists:DDB0234211 GeneID:8619377
KEGG:ddi:DDB_G0274325 OMA:NGITSHE Uniprot:Q86IZ9
Length = 668
Score = 159 (61.0 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 91/344 (26%), Positives = 154/344 (44%)
Query: 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV----ALRAIFCVVSAGKQAMV 336
EP+P Q + + L ERE + G GKT L+A++ G ++++
Sbjct: 221 EPSPIQMQVIPIL---LKEREV----VAIAPTGSGKTASFSIPILQALYEPKKEGFRSVI 273
Query: 337 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 396
+APT LA+Q + SK ++ +LS+ E+L IK+ +I++ T
Sbjct: 274 IAPTRELAQQIYRNF-RLLSKGKPFRICVLSKNLHNQSTNENL--IKN--YDILITTPLR 328
Query: 397 LGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVD-VLTLSATP-IPRTLYLALTGFR 454
L + N L L V E F K +F+ VD V+T P + L+ A +
Sbjct: 329 LVYLIKENLLSLNKV-EYLVFDEADKLFDKNFQEQVDIVVTACQNPKLKICLFSATMNQQ 387
Query: 455 DASL---ISTPPPERLPIKTHLSAFS-KEKVISAIKYELDRGGQVFYVLPRI-KGLEEPM 509
L I P + + + + +A + +K+I K E G++ V I KGLE P+
Sbjct: 388 VEELGHSIMKNPIKIIIGEQNAAAITVDQKLIYVGKEE----GKLLAVRQLIQKGLEPPI 443
Query: 510 -----------DFLQQA-FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 557
D Q+ F G+++ + H ++ Q + ++KF G I +LICT ++ G
Sbjct: 444 LIFTQSKERAHDLFQELIFDGINVDVIHSERTQFQRDTIVKKFRMGKIWVLICTELMARG 503
Query: 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPD 601
+D + N +I D + ++++ GR GRA + AY Y D
Sbjct: 504 MDFKGVNFVINFDFPHTLASYIHRI-GRTGRAGRPGVAYTLYTD 546
Score = 41 (19.5 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 57 PTSKKPTQRREKNENETDDISILNE 81
P K+ + + N+ E +DI++ N+
Sbjct: 109 PKEKEFIKHQVNNDEEEEDITLFNK 133
Score = 41 (19.5 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 55 SSPT-SKKPTQRREKNENETDDISILNERIRRD 86
S+P SKK +++K E E +D NE + D
Sbjct: 54 STPVISKKDNIKQKKEEEEDNDND--NEESKED 84
>GENEDB_PFALCIPARUM|PFE0215w [details] [associations]
symbol:PFE0215w "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
Length = 755
Score = 152 (58.6 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 41/138 (29%), Positives = 67/138 (48%)
Query: 465 ERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA 524
+ + IKT K ++ I GGQV + R K LE + + +F + A+
Sbjct: 405 KHIAIKTPYDIKEKALLLEDIILVKSNGGQVI-IFTRTK-LEADILCSEGSFKSLSFAVL 462
Query: 525 HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRG 584
HG E TM++F QG +ILI T+I GLDI N + +I + +++ G
Sbjct: 463 HGNIAQSTREYTMQRFRQGMFQILIATDIASRGLDISNVDLVIQCFPPNYSAVYIHRA-G 521
Query: 585 RVGRADKEAHAYLFYPDK 602
R GRA+K+ + + Y ++
Sbjct: 522 RTGRANKKGTSLVLYSNE 539
>UNIPROTKB|Q8I457 [details] [associations]
symbol:PFE0215w "ATP-dependent helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
Length = 755
Score = 152 (58.6 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 41/138 (29%), Positives = 67/138 (48%)
Query: 465 ERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA 524
+ + IKT K ++ I GGQV + R K LE + + +F + A+
Sbjct: 405 KHIAIKTPYDIKEKALLLEDIILVKSNGGQVI-IFTRTK-LEADILCSEGSFKSLSFAVL 462
Query: 525 HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRG 584
HG E TM++F QG +ILI T+I GLDI N + +I + +++ G
Sbjct: 463 HGNIAQSTREYTMQRFRQGMFQILIATDIASRGLDISNVDLVIQCFPPNYSAVYIHRA-G 521
Query: 585 RVGRADKEAHAYLFYPDK 602
R GRA+K+ + + Y ++
Sbjct: 522 RTGRANKKGTSLVLYSNE 539
>TIGR_CMR|CHY_1485 [details] [associations]
symbol:CHY_1485 "primosomal protein N'" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0003688 "DNA replication
origin binding" evidence=ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR001650 InterPro:IPR005259
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006260 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1198
KO:K04066 TIGRFAMs:TIGR00595 HOGENOM:HOG000037414 OMA:MSLNLPD
RefSeq:YP_360317.1 ProteinModelPortal:Q3AC17 STRING:Q3AC17
GeneID:3726648 KEGG:chy:CHY_1485 PATRIC:21276101
BioCyc:CHYD246194:GJCN-1484-MONOMER Uniprot:Q3AC17
Length = 718
Score = 149 (57.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 69/253 (27%), Positives = 117/253 (46%)
Query: 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338
P E T QK+ + ++RD+ + L+ G G GKTE+ L+ ++ GKQ + L
Sbjct: 179 PIELTESQKQVYQQIKRDMPKNFVG---LLHGITGSGKTEIYLKLAGDFLNHGKQVLFLL 235
Query: 339 PTIVLAKQHFDVVSERFSKY-PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 397
P I + Q +V+ R KY P+ + SR ++ EK +K G +++GT S
Sbjct: 236 PEIGITTQ---MVA-RVKKYFPENTLVYHSRLSAR-EKFTVWRELKKGSPVLVLGTRS-- 288
Query: 398 GSRVVYNNLGLLVVDEEQRFGVKQKE-------KIASFK---ISVDVLTLSATPIPRTLY 447
+ + + NLGL+++DEE KQ+E ++ ++ + + +L +ATP T
Sbjct: 289 AAFLPFQNLGLIILDEEHELSYKQEETPKYHVREVVYWRAKRLGIPLLLGTATPSMETYA 348
Query: 448 LALTG-----FRDASLISTPPPERLPIKTHLSAFSKEK-VISA-----IKYELDRGGQVF 496
++G F + P P+ + + A +IS+ I L +G QVF
Sbjct: 349 AVISGLIKYYFLGKRYQNRPYPQVIIVDMFKEAKEGNTGIISSVLQKKISERLQKGEQVF 408
Query: 497 YVLPRIKGLEEPM 509
L R +G PM
Sbjct: 409 LFLNR-RGFA-PM 419
Score = 48 (22.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+P E I NP + +A + + L + SLR+Q G P+S
Sbjct: 575 VPGEVIIQTFNPENYIIQAVQRGNFQQYALKEL--SLRKQTGYPPFS 619
>UNIPROTKB|E1BUI4 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 OMA:HIDQTPG GeneTree:ENSGT00550000075141
EMBL:AADN02043240 IPI:IPI00601309 Ensembl:ENSGALT00000010245
Uniprot:E1BUI4
Length = 676
Score = 125 (49.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L QAF G+ +A + + + TM++F QG I++LI T+ G+DI+ N +I D
Sbjct: 533 LVQAFGGITVAEFSSRLPPNERQRTMKEFEQGKIQLLISTDATARGIDIKGVNCVINYDT 592
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAY 596
QF ++++ GR RA K A+
Sbjct: 593 PQFIRTYIHRV-GRTARAGKAGLAF 616
Score = 72 (30.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 42/135 (31%), Positives = 62/135 (45%)
Query: 303 PMDRLICGDVGFGKT--------EVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSER 354
P D + G GKT +V L + C V +A+V+ PT LA+Q VS+
Sbjct: 256 PKDICVSAPTGSGKTLSFVIPIVQVLLDRVVCQV----RALVVLPTKELAQQ----VSKV 307
Query: 355 FSKYPD---IKVGLLSRFQSKAEKEEHLDMIK-HGHLN---IIVGTHSLLGSRVV----- 402
F+ Y D +KV L++ +S A+++E L K G+ + IIV T L +
Sbjct: 308 FNIYTDGTGLKVVLITGQKSFAKEQEMLVQKKVTGYCSLADIIVATPGRLADHISKTPGF 367
Query: 403 -YNNLGLLVVDEEQR 416
L L+VDE R
Sbjct: 368 SLTQLRFLIVDEADR 382
>TIGR_CMR|CBU_1815 [details] [associations]
symbol:CBU_1815 "primosomal protein N'" species:227377
"Coxiella burnetii RSA 493" [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0003688 "DNA replication origin binding"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001650 InterPro:IPR005259 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE016828
GenomeReviews:AE016828_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000037413 KO:K04066
TIGRFAMs:TIGR00595 RefSeq:NP_820794.1 ProteinModelPortal:Q83AR5
PRIDE:Q83AR5 GeneID:1209726 KEGG:cbu:CBU_1815 PATRIC:17932365
OMA:RRALVCH ProtClustDB:CLSK915049
BioCyc:CBUR227377:GJ7S-1788-MONOMER Uniprot:Q83AR5
Length = 662
Score = 143 (55.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 59/213 (27%), Positives = 99/213 (46%)
Query: 307 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLL 366
L+ G G GKTEV LR I ++ KQA++L P I L Q + ERF+ + +L
Sbjct: 154 LLAGVTGSGKTEVYLRCIEKLIQQEKQALILVPEIGLTPQTLNRFRERFN----VPTAVL 209
Query: 367 SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE--K 424
+ ++ + M K G I++GT S + + ++ N G++++DEE KQ+ +
Sbjct: 210 HSSLTDKKRAQAWMMAKRGTAKIVIGTRSAIFTPLL--NPGIIILDEEHDTSFKQQSGFR 267
Query: 425 IASFKISV--------DVLTLSATPIPRTLY-LALTGFRDASLISTPPPERLPIKT---- 471
++ ++V V+ SATP +LY + ++ SL +LP T
Sbjct: 268 YSARDLAVMRGQFENIPVVLGSATPSLESLYNVERRRYQLLSLPGRAGKAKLPSLTIVDL 327
Query: 472 ---HLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
L A E ++ +I+ + GQV L R
Sbjct: 328 RQKKLIAGMSEDLLISIEKHIKNKGQVLLFLNR 360
Score = 51 (23.0 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 27/108 (25%), Positives = 40/108 (37%)
Query: 504 GLEEPMDFLQQAFPGVDIA-IAHGQQYSRQ-LEETMEKFAQGAIKILICTNIVESGLDIQ 561
G E LQQ FP DI I ++ +E + ILI T ++ G
Sbjct: 423 GTERLEAALQQRFPNDDIVRIDRDSTRTKNSMENKLNLIHNREAPILIGTQMIAKGHHFS 482
Query: 562 NANTIIVQDVQQFGL-----------AQLY-QLRGRVGRADKEAHAYL 597
+ + + D GL QL Q+ GR GR D++ +
Sbjct: 483 HLTLVAIIDADS-GLYSADFRATERMGQLLTQVAGRAGRVDRQGEVLI 529
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 140 (54.3 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 75/316 (23%), Positives = 130/316 (41%)
Query: 305 DRLICGDVGFGKTEVALRAIFCVVSAGK-------QAMVLAPTIVLAKQHFDVVSERFSK 357
D + G GKT + I + G+ +A++L PT LA Q + V E++ K
Sbjct: 40 DLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALILVPTRELAMQVAEKV-EQYGK 98
Query: 358 YPDIK-VGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS----LLGSRVVY-NNLGLLVV 411
+K + + +A+K+ +D + +++V T L G R VY + ++V+
Sbjct: 99 DTGLKSLAVFGGVDEQAQKQRLIDGV-----DVLVATPGRLMDLYGQRAVYFEEIEMVVL 153
Query: 412 DEEQRF---G-VKQKEKIASFKIS-VDVLTLSATPIPRTLYLALTGFRDASLISTPPPE- 465
DE R G ++ KI S V L SAT + LA T RD IS +
Sbjct: 154 DEADRMLDMGFIESINKIIDCLPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQA 213
Query: 466 -RLPIKTHLSAFSKEKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIA 522
+ I L K+ + + + ++ + Q + G + + L++ G+
Sbjct: 214 SKSNISQWLITVDKDTKSALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKR--GIHAE 271
Query: 523 IAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQL 582
H + + +E F G IK L+ T + G+DI + ++ D+ F +
Sbjct: 272 AFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYDLP-FPADEYVHR 330
Query: 583 RGRVGRADKEAHAYLF 598
GR GRA+ A F
Sbjct: 331 IGRTGRAEAVGEAISF 346
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 140 (54.3 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 75/316 (23%), Positives = 130/316 (41%)
Query: 305 DRLICGDVGFGKTEVALRAIFCVVSAGK-------QAMVLAPTIVLAKQHFDVVSERFSK 357
D + G GKT + I + G+ +A++L PT LA Q + V E++ K
Sbjct: 40 DLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALILVPTRELAMQVAEKV-EQYGK 98
Query: 358 YPDIK-VGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS----LLGSRVVY-NNLGLLVV 411
+K + + +A+K+ +D + +++V T L G R VY + ++V+
Sbjct: 99 DTGLKSLAVFGGVDEQAQKQRLIDGV-----DVLVATPGRLMDLYGQRAVYFEEIEMVVL 153
Query: 412 DEEQRF---G-VKQKEKIASFKIS-VDVLTLSATPIPRTLYLALTGFRDASLISTPPPE- 465
DE R G ++ KI S V L SAT + LA T RD IS +
Sbjct: 154 DEADRMLDMGFIESINKIIDCLPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQA 213
Query: 466 -RLPIKTHLSAFSKEKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIA 522
+ I L K+ + + + ++ + Q + G + + L++ G+
Sbjct: 214 SKSNISQWLITVDKDTKSALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKR--GIHAE 271
Query: 523 IAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQL 582
H + + +E F G IK L+ T + G+DI + ++ D+ F +
Sbjct: 272 AFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYDLP-FPADEYVHR 330
Query: 583 RGRVGRADKEAHAYLF 598
GR GRA+ A F
Sbjct: 331 IGRTGRAEAVGEAISF 346
>TIGR_CMR|GSU_0128 [details] [associations]
symbol:GSU_0128 "primosomal protein n`" species:243231
"Geobacter sulfurreducens PCA" [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0003688 "DNA replication origin binding"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001650 InterPro:IPR005259 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 KO:K04066 TIGRFAMs:TIGR00595
HOGENOM:HOG000037414 RefSeq:NP_951190.1 ProteinModelPortal:Q74GW6
DNASU:2688064 GeneID:2688064 KEGG:gsu:GSU0128 PATRIC:22023004
OMA:RMTVHQR ProtClustDB:CLSK827655
BioCyc:GSUL243231:GH27-139-MONOMER Uniprot:Q74GW6
Length = 751
Score = 151 (58.2 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 63/203 (31%), Positives = 97/203 (47%)
Query: 223 LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQF-PYE 281
L++ + +A E R+ G+ ++Q + L EL + + R Y ++P E P E
Sbjct: 162 LAEREEESASELRRLFGECSVQ--LRRLRELGFVEMAE-REIY-RDPFRMEAVGHDRPLE 217
Query: 282 PTPDQKKAFLDVERDLTE-RETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 340
Q A + + L R TP L+ G G GKTEV L+AI + G+ A+VL P
Sbjct: 218 LNERQSAALVRLRAALDAGRFTPF--LLRGVTGSGKTEVYLQAIAHCLEQGRSALVLVPE 275
Query: 341 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 400
I L Q +VS RF + V +L S E+ + I+ G I++G S + +
Sbjct: 276 IALTPQ---LVS-RFRRRFRCGVAVLHSGLSDGERFDEWRRIRRGEAAIVIGARSAIFAP 331
Query: 401 VVYNNLGLLVVDEEQRFGVKQKE 423
+ +LG++VVDEE KQ E
Sbjct: 332 LA--DLGMIVVDEEHEGSYKQGE 352
Score = 41 (19.5 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 23/100 (23%), Positives = 40/100 (40%)
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQ--LEETMEKFAQGAIKILICTNIVESGLDIQ 561
G E+ ++++ FP + +R+ + K A+ ILI T +V G D
Sbjct: 510 GTEQVEAYVREHFPHARVDRMDRDTTARRGGHARILRKVAERQTDILIGTQMVAKGHDFP 569
Query: 562 NANTIIVQDVQQ------FGLAQ-----LYQLRGRVGRAD 590
+ + V+ + A+ + QL GR GR D
Sbjct: 570 GITLVGILSVESTLNIPDYRSAERTFQLVTQLIGRAGRGD 609
>UNIPROTKB|A8MTP9 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000242486
HOVERGEN:HBG051332 EMBL:AC091199 HGNC:HGNC:20038
PharmGKB:PA134904836 ChiTaRS:DDX52 NextBio:42007 IPI:IPI00394982
ProteinModelPortal:A8MTP9 SMR:A8MTP9 STRING:A8MTP9 PRIDE:A8MTP9
Ensembl:ENST00000394367 ArrayExpress:A8MTP9 Bgee:A8MTP9
Uniprot:A8MTP9
Length = 491
Score = 140 (54.3 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 31/111 (27%), Positives = 59/111 (53%)
Query: 498 VLPRIKGLEEPMD-FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556
VL ++ +E + F + + G+++ + H ++ +Q + T+ F G I +LICT ++
Sbjct: 307 VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLAR 366
Query: 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP--DKSLL 605
G+D + N +I D + ++++ GR GRA + A F+ DK LL
Sbjct: 367 GIDFKGVNLVINYDFPTSSVEYIHRI-GRTGRAGNKGKAITFFTEDDKPLL 416
>ZFIN|ZDB-GENE-060623-1 [details] [associations]
symbol:ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
52" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060623-1
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:11056 HOVERGEN:HBG051332 KO:K14779
OrthoDB:EOG4XKV6Q EMBL:BC117610 IPI:IPI00627696
RefSeq:NP_001037780.1 UniGene:Dr.13799 ProteinModelPortal:Q1ECZ5
STRING:Q1ECZ5 GeneID:407696 KEGG:dre:407696 NextBio:20818558
Uniprot:Q1ECZ5
Length = 606
Score = 141 (54.7 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 86/358 (24%), Positives = 155/358 (43%)
Query: 275 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC----VVSA 330
AA F PTP Q +A V + +RE L C G GKT + ++
Sbjct: 184 AAGFQ-TPTPIQMQA---VPLMMHKREI----LACAPTGSGKTMAFCLPLLAHLRQPLNK 235
Query: 331 GKQAMVLAPTIVLAKQ-HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
G +A++++PT LA Q H +++ + S+ +V ++++ +K K +I
Sbjct: 236 GFRALIISPTRELATQTHRELL--KLSEGVGFRVHMINKGVEAVKKYGPKSAKK---FDI 290
Query: 390 IVGTHS----LLGSRVVYNNLGL---LVVDEEQRFGVKQK----EKIASFKISVD----- 433
+V T + LL NL LVVDE + K E++A+ ++
Sbjct: 291 LVTTPNRLIYLLNQDPPAINLSSVEWLVVDESDKLFEDGKTGFREQLATIFLACSSPNVR 350
Query: 434 -VLTLS--ATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELD 490
VL + AT + R L L S+ + + L S+ I A++ L
Sbjct: 351 RVLFSATFATDVERWCKLNLDNLVSVSIGARNSAAETVEQQLLFVGSENGKILAMR-NLI 409
Query: 491 RGGQVFYVLPRIKGLEEPMDFLQQ-AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILI 549
+ G + VL ++ ++ + + + G+++ + H + +Q + + F G I +LI
Sbjct: 410 KQGFLPPVLVFVQSIDRARELYHELVYEGINVDVIHADRTQQQRDNVVSSFRSGKIWVLI 469
Query: 550 CTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP--DKSLL 605
CT ++ G+D + N +I D + ++++ GR GRA + A F+ DK LL
Sbjct: 470 CTALLARGIDFKGINLVINYDFPTSAVEYIHRI-GRTGRAGHKGKAVTFFTEDDKPLL 526
>UNIPROTKB|Q9Y2R4 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AF077033 EMBL:AK001652 EMBL:AK093661 EMBL:AC091199
EMBL:BC041785 EMBL:AJ010840 IPI:IPI00032423 RefSeq:NP_008941.2
UniGene:Hs.590937 PDB:3DKP PDBsum:3DKP ProteinModelPortal:Q9Y2R4
SMR:Q9Y2R4 IntAct:Q9Y2R4 STRING:Q9Y2R4 PhosphoSite:Q9Y2R4
DMDM:296439375 SWISS-2DPAGE:Q9Y2R4 PaxDb:Q9Y2R4 PRIDE:Q9Y2R4
Ensembl:ENST00000349699 GeneID:11056 KEGG:hsa:11056 UCSC:uc002hoh.2
GeneCards:GC17M035969 HGNC:HGNC:20038 MIM:612500 neXtProt:NX_Q9Y2R4
PharmGKB:PA134904836 InParanoid:Q9Y2R4 PhylomeDB:Q9Y2R4
ChiTaRS:DDX52 EvolutionaryTrace:Q9Y2R4 GenomeRNAi:11056
NextBio:42007 ArrayExpress:Q9Y2R4 Bgee:Q9Y2R4 CleanEx:HS_DDX52
Genevestigator:Q9Y2R4 GermOnline:ENSG00000141141 Uniprot:Q9Y2R4
Length = 599
Score = 140 (54.3 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 31/111 (27%), Positives = 59/111 (53%)
Query: 498 VLPRIKGLEEPMD-FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556
VL ++ +E + F + + G+++ + H ++ +Q + T+ F G I +LICT ++
Sbjct: 415 VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLAR 474
Query: 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP--DKSLL 605
G+D + N +I D + ++++ GR GRA + A F+ DK LL
Sbjct: 475 GIDFKGVNLVINYDFPTSSVEYIHRI-GRTGRAGNKGKAITFFTEDDKPLL 524
Score = 47 (21.6 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 50 PGLSLSSPTSKKPTQRREKNENETDDISILNERIRRDFGKREATRPVMDSEEADK 104
PG+ +S T +KP Q EK E L ER +R+ K++ R M SE A +
Sbjct: 56 PGVCGASQTHQKP-QNGEKKEES------LTER-KREQSKKK--RKTMTSEIASQ 100
>MGI|MGI:1925644 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1925644 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:CH466556 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AK080767 EMBL:AK133545 EMBL:AL645615 EMBL:BC029094
IPI:IPI00336965 RefSeq:NP_084372.2 UniGene:Mm.280544
ProteinModelPortal:Q8K301 SMR:Q8K301 STRING:Q8K301
PhosphoSite:Q8K301 PaxDb:Q8K301 PRIDE:Q8K301
Ensembl:ENSMUST00000049257 GeneID:78394 KEGG:mmu:78394
InParanoid:Q3UZY9 NextBio:348796 Bgee:Q8K301 CleanEx:MM_DDX52
Genevestigator:Q8K301 GermOnline:ENSMUSG00000020677 Uniprot:Q8K301
Length = 598
Score = 139 (54.0 bits), Expect = 9.4e-06, P = 9.4e-06
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 498 VLPRIKGLEEPMD-FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556
VL ++ +E + F + + G+++ + H ++ +Q + T+ F G I +LICT ++
Sbjct: 416 VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLAR 475
Query: 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP--DKSLL 605
G+D + N +I D + ++++ GR GRA A F+ DK LL
Sbjct: 476 GIDFKGVNLVINYDFPTSSVEYIHRI-GRTGRAGNRGKAVTFFTEDDKPLL 525
>TIGR_CMR|APH_0356 [details] [associations]
symbol:APH_0356 "primosomal protein N'" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0003688 "DNA replication origin binding"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001650 InterPro:IPR005259 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1198 KO:K04066 OMA:ERQTMQL
TIGRFAMs:TIGR00595 HOGENOM:HOG000037414 ProtClustDB:CLSK749377
RefSeq:YP_504963.1 ProteinModelPortal:Q2GKY8 STRING:Q2GKY8
GeneID:3930605 KEGG:aph:APH_0356 PATRIC:20949314
BioCyc:APHA212042:GHPM-385-MONOMER Uniprot:Q2GKY8
Length = 658
Score = 119 (46.9 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 49/150 (32%), Positives = 68/150 (45%)
Query: 275 AAQFPYEPTPDQKKAF-LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--AG 331
A + P +P+ DQ A VER T +D G G GKTEV A ++ A
Sbjct: 124 AGKLP-QPSEDQSYACNYIVERSTGFSVTVLD----GKTGAGKTEVYCTAAEKLLQECAD 178
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
Q +VL P IVLA Q + FS ++ S K +E L + G +I+V
Sbjct: 179 AQVLVLLPEIVLATQLMKRIYSYFSTCNPVEWH--SELTVKRRRENWL-AVTRGTTSIVV 235
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQ 421
G S L + + NL +++VDEE KQ
Sbjct: 236 GARSALF--LPFKNLKMIIVDEEHESSYKQ 263
Score = 69 (29.3 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 25/116 (21%), Positives = 49/116 (42%)
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+E ++ +Q+ P + ++Q +E+ QG + I+I T I+ G +
Sbjct: 426 GIERILEGIQELIPTARSVVLSSDISAKQANSIVEQVLQGEVDIIIGTQIIAKGHNFPKL 485
Query: 564 NTIIVQDVQQFGLAQ------------LYQLRGRVGRADKEAHAYL--FYPDKSLL 605
+ V D GL L+Q+ GR GR ++ L + P+ +++
Sbjct: 486 TLVGVIDAD-LGLGNSDLRATEKTYQLLHQVSGRSGRYKEKGQVVLQTYDPESAVI 540
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 137 (53.3 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 77/300 (25%), Positives = 131/300 (43%)
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIK-VGLLSRFQSKAEKEEHLDMIKHG 385
V ++ QA+V+APT LA Q VSE K +K V +L + + + + + KH
Sbjct: 66 VKNSAVQALVVAPTRELAIQ----VSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHP 121
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDV-LTLSATPIPR 444
H +IVGT G + + N G L ++ + + +++ + D+ LS P R
Sbjct: 122 H--VIVGTP---GRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAER 176
Query: 445 -TLYLALT---GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK-YELD-RGGQVFYV 498
TL + T R + PE + +K +KE + I+ Y L+ + F +
Sbjct: 177 QTLLFSATMPDPIRRIAERFMNEPELVKVK------AKEMTVPNIQQYYLEVHEKKKFDI 230
Query: 499 LPRIKGLEEP------------MDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGA 544
L R+ ++ P +D L +A G HG + + KF +GA
Sbjct: 231 LTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGA 290
Query: 545 IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604
I+IL+ T++ GLDI + D+ Q + ++++ GR GRA K A F + +
Sbjct: 291 IEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKTGVAMTFVTPREI 349
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 136 (52.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 88/370 (23%), Positives = 153/370 (41%)
Query: 268 NPAIAEFAAQFPYE-PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
N + + A+ Y+ PTP Q +A + LT++ D + G GKT I
Sbjct: 9 NTQLVDTLAELGYQQPTPIQVEAIPAI---LTKQ----DVMAGAQTGTGKTAAFALPILQ 61
Query: 327 VVSAGKQ---------AMVLAPTIVLAKQHFDVVSERFSKYP---DIKVGLLSRFQSKAE 374
++ A Q A+VL PT LA Q V + F KY DI+VG+ S E
Sbjct: 62 LLMADNQSDHAAKAIRALVLVPTRELALQ----VQQSFVKYAKGTDIRVGIAYGGVS-IE 116
Query: 375 KEEHLDMIKHGHLNIIVGT------HSLLGSRVVYNNLGLLVVDEEQRF---GVKQKEKI 425
++ + + +++++ T H G+ + N L LV DE R G + +
Sbjct: 117 AQQ---AVFNAGIDVLIATPGRLLDHLRQGA-LNLNQLNTLVFDEADRMLDMGFMDEIQA 172
Query: 426 ASFKISVDVLTL--SATPIPRTLYLALTGFRDASLISTPPPERLP--IKTHLSAFSKEKV 481
++ TL SAT + RD I P I+ + A ++
Sbjct: 173 VLKQVPAQRQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRK 232
Query: 482 ISAIKYEL-DRGGQVFYVLPRIK-GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEK 539
+ + + + Q + R K G+++ L + GV HG E+ +++
Sbjct: 233 TEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKL--GVATQSFHGDLSQGAREKVLQE 290
Query: 540 FAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAY-LF 598
F QG +++L+ T++ GLDI +I ++ ++++ GR GRA A LF
Sbjct: 291 FKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRI-GRTGRAGSAGLAITLF 349
Query: 599 YPDKSLLSDQ 608
+ +LL ++
Sbjct: 350 SQEDALLLEE 359
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 136 (52.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 88/370 (23%), Positives = 153/370 (41%)
Query: 268 NPAIAEFAAQFPYE-PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
N + + A+ Y+ PTP Q +A + LT++ D + G GKT I
Sbjct: 9 NTQLVDTLAELGYQQPTPIQVEAIPAI---LTKQ----DVMAGAQTGTGKTAAFALPILQ 61
Query: 327 VVSAGKQ---------AMVLAPTIVLAKQHFDVVSERFSKYP---DIKVGLLSRFQSKAE 374
++ A Q A+VL PT LA Q V + F KY DI+VG+ S E
Sbjct: 62 LLMADNQSDHAAKAIRALVLVPTRELALQ----VQQSFVKYAKGTDIRVGIAYGGVS-IE 116
Query: 375 KEEHLDMIKHGHLNIIVGT------HSLLGSRVVYNNLGLLVVDEEQRF---GVKQKEKI 425
++ + + +++++ T H G+ + N L LV DE R G + +
Sbjct: 117 AQQ---AVFNAGIDVLIATPGRLLDHLRQGA-LNLNQLNTLVFDEADRMLDMGFMDEIQA 172
Query: 426 ASFKISVDVLTL--SATPIPRTLYLALTGFRDASLISTPPPERLP--IKTHLSAFSKEKV 481
++ TL SAT + RD I P I+ + A ++
Sbjct: 173 VLKQVPAQRQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRK 232
Query: 482 ISAIKYEL-DRGGQVFYVLPRIK-GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEK 539
+ + + + Q + R K G+++ L + GV HG E+ +++
Sbjct: 233 TEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKL--GVATQSFHGDLSQGAREKVLQE 290
Query: 540 FAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAY-LF 598
F QG +++L+ T++ GLDI +I ++ ++++ GR GRA A LF
Sbjct: 291 FKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRI-GRTGRAGSAGLAITLF 349
Query: 599 YPDKSLLSDQ 608
+ +LL ++
Sbjct: 350 SQEDALLLEE 359
>UNIPROTKB|I3LJA0 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:FP565631 EMBL:FP312903 Ensembl:ENSSSCT00000024730
Uniprot:I3LJA0
Length = 507
Score = 137 (53.3 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 498 VLPRIKGLEEPMD-FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556
VL ++ +E + F + + G+++ + H + +Q + T+ F G I +LICT ++
Sbjct: 323 VLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLAR 382
Query: 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP--DKSLL 605
G+D + N +I D + ++++ GR GRA + A F+ DK LL
Sbjct: 383 GIDFKGVNLVINYDFPTSSVEYIHRI-GRTGRAGHKGKAVTFFTEDDKPLL 432
>UNIPROTKB|Q8N8A6 [details] [associations]
symbol:DDX51 "ATP-dependent RNA helicase DDX51"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 KO:K14807 OMA:HIDQTPG CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 OrthoDB:EOG4JM7PM
EMBL:AK097078 EMBL:AC138466 EMBL:BC012461 EMBL:BC040185
EMBL:CR936870 IPI:IPI00217541 RefSeq:NP_778236.2 UniGene:Hs.445168
ProteinModelPortal:Q8N8A6 SMR:Q8N8A6 IntAct:Q8N8A6 STRING:Q8N8A6
PhosphoSite:Q8N8A6 DMDM:229462978 PaxDb:Q8N8A6 PRIDE:Q8N8A6
Ensembl:ENST00000397333 GeneID:317781 KEGG:hsa:317781
UCSC:uc001ujy.4 GeneCards:GC12M132621 H-InvDB:HIX0018137
HGNC:HGNC:20082 HPA:HPA039503 neXtProt:NX_Q8N8A6
PharmGKB:PA134974036 InParanoid:Q8N8A6 PhylomeDB:Q8N8A6
GenomeRNAi:317781 NextBio:96442 Bgee:Q8N8A6 CleanEx:HS_DDX51
Genevestigator:Q8N8A6 GermOnline:ENSG00000185163 Uniprot:Q8N8A6
Length = 666
Score = 117 (46.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L QAF GVD+A + Q +++F QG I++LI T+ G+D+Q ++ D
Sbjct: 523 LVQAFGGVDVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDA 582
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAY 596
Q+ ++++ GR RA K A+
Sbjct: 583 PQYLRTYVHRV-GRTARAGKTGQAF 606
Score = 70 (29.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 36/131 (27%), Positives = 60/131 (45%)
Query: 303 PMDRLICGDVGFGKTEV----ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 358
P D + G GKT ++A+ V +A+V+ PT LA+Q VS+ F+ Y
Sbjct: 249 PSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKELAQQ----VSKVFNIY 304
Query: 359 PD---IKVGLLSRFQSKAEKEEHL-DMIKHGH---LNIIVGTHSLLGSRV------VYNN 405
D ++V L++ +S A+++E L G+ +I+V T L +
Sbjct: 305 TDATPLRVSLVTGQKSLAKEQESLVQKTADGYRCLADIVVATPGRLVDHIDQTPGFSLQQ 364
Query: 406 LGLLVVDEEQR 416
L L++DE R
Sbjct: 365 LRFLIIDEADR 375
>TAIR|locus:2147987 [details] [associations]
symbol:UAP56a "homolog of human UAP56 a" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0009506
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046686
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL360314 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ010466 EMBL:AY052303
EMBL:BT001052 EMBL:AK221273 EMBL:AK221708 EMBL:AK226428
IPI:IPI00760330 IPI:IPI00760336 IPI:IPI00760344 PIR:T51343
RefSeq:NP_568244.2 RefSeq:NP_568245.1 UniGene:At.49007
UniGene:At.73904 ProteinModelPortal:Q56XG6 SMR:Q56XG6 IntAct:Q56XG6
STRING:Q56XG6 PRIDE:Q56XG6 EnsemblPlants:AT5G11170.1
EnsemblPlants:AT5G11200.1 GeneID:830986 GeneID:830990
KEGG:ath:AT5G11170 KEGG:ath:AT5G11200 GeneFarm:932 TAIR:At5g11170
InParanoid:Q56XG6 PhylomeDB:Q56XG6 ProtClustDB:CLSN2689601
Genevestigator:Q56XG6 Uniprot:Q56XG6
Length = 427
Score = 135 (52.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 83/324 (25%), Positives = 137/324 (42%)
Query: 304 MDRLIC-GDVGFGKTEVALRAIFCVV--SAGK-QAMVLAPTIVLAKQHFDVVSE--RFSK 357
MD +IC G GKT V + + + S G+ A+VL T LA Q + +E RFS
Sbjct: 84 MD-VICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQ---ICNEFVRFST 139
Query: 358 Y-PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL-----LVV 411
Y PD KV + F + H D++K+ +I+VGT + + +L L ++
Sbjct: 140 YLPDTKVSV---FYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFIL 196
Query: 412 DEEQRF--GVKQKEKIAS-FKISV---DVLTLSATPIPRTLYLALTGFRDASLISTPPPE 465
DE + + + + FK++ V+ SAT + +D I
Sbjct: 197 DECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA 256
Query: 466 RLPIK---TH---LSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGV 519
+L + H LS K + ++ + LD V +V + E ++ FP
Sbjct: 257 KLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPS- 315
Query: 520 DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQL 579
I I G +L + F +G +IL+ T++V G+DI+ N +I D+ L
Sbjct: 316 -ICIHSGMSQEERLTR-YKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYL 373
Query: 580 YQLRGRVGRADKEAHAYLFYPDKS 603
+++ GR GR + A F S
Sbjct: 374 HRV-GRAGRFGTKGLAITFVASAS 396
>SGD|S000003139 [details] [associations]
symbol:ROK1 "RNA-dependent ATPase" species:4932
"Saccharomyces cerevisiae" [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0030686
"90S preribosome" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0048254 "snoRNA localization" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000472 "endonucleolytic
cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003139
GO:GO:0005524 GO:GO:0005730 EMBL:BK006941 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:X85757
GO:GO:0030686 GO:GO:0004004 GO:GO:0000447 GO:GO:0000472
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000480
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
OMA:NVMKQSG OrthoDB:EOG425926 EMBL:Z34901 EMBL:Z72693 PIR:S59649
RefSeq:NP_011344.1 ProteinModelPortal:P45818 SMR:P45818
DIP:DIP-5111N IntAct:P45818 MINT:MINT-483312 STRING:P45818
PaxDb:P45818 PeptideAtlas:P45818 EnsemblFungi:YGL171W GeneID:852704
KEGG:sce:YGL171W CYGD:YGL171w NextBio:972056 Genevestigator:P45818
GermOnline:YGL171W GO:GO:0048254 Uniprot:P45818
Length = 564
Score = 124 (48.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 519 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 578
+++ + H ++ + Q + +E+F G + LICT+++ G+D + N +I DV G +Q
Sbjct: 397 INVDVIHAERTALQRDRIIERFKTGELWCLICTDVLARGIDFKGVNLVINYDVP--GSSQ 454
Query: 579 LYQLR-GRVGRADKEAHAYLFY 599
Y R GR GR + A FY
Sbjct: 455 AYVHRIGRTGRGGRSGKAITFY 476
Score = 60 (26.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 25/73 (34%), Positives = 35/73 (47%)
Query: 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-----SAGKQAM 335
EPTP Q + + V L R D L CG G GKT L + + +AG + +
Sbjct: 144 EPTPIQCEC-IPVA--LNNR----DVLACGPTGSGKTLAFLIPLVQQIIDDKQTAGLKGL 196
Query: 336 VLAPTIVLAKQHF 348
+++PT LA Q F
Sbjct: 197 IISPTKELANQIF 209
>UNIPROTKB|A5D7C1 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:BC140501 IPI:IPI00692860
RefSeq:NP_001096708.1 UniGene:Bt.51117 ProteinModelPortal:A5D7C1
SMR:A5D7C1 PRIDE:A5D7C1 Ensembl:ENSBTAT00000013622 GeneID:510826
KEGG:bta:510826 CTD:11056 GeneTree:ENSGT00550000074863
HOGENOM:HOG000242486 HOVERGEN:HBG051332 InParanoid:A5D7C1 KO:K14779
OMA:NVMKQSG OrthoDB:EOG4XKV6Q NextBio:20869637 ArrayExpress:A5D7C1
Uniprot:A5D7C1
Length = 596
Score = 137 (53.3 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 498 VLPRIKGLEEPMD-FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556
VL ++ +E + F + + G+++ + H + +Q + T+ F G I +LICT ++
Sbjct: 413 VLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLAR 472
Query: 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP--DKSLL 605
G+D + N +I D + ++++ GR GRA + A F+ DK LL
Sbjct: 473 GIDFKGVNLVINYDFPTSSVEYIHRI-GRTGRAGHKGKAVTFFTEDDKPLL 522
>UNIPROTKB|J9P4L6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AAEX03026218 Ensembl:ENSCAFT00000021498 Uniprot:J9P4L6
Length = 598
Score = 137 (53.3 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 498 VLPRIKGLEEPMD-FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556
VL ++ +E + F + + G+++ + H + +Q + T+ F G I +LICT ++
Sbjct: 414 VLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLAR 473
Query: 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP--DKSLL 605
G+D + N +I D + ++++ GR GRA + A F+ DK LL
Sbjct: 474 GIDFKGVNLVINYDFPTSSVEYIHRI-GRTGRAGHKGKAVTFFTEDDKPLL 523
>UNIPROTKB|E2RB54 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:ERESINT
EMBL:AAEX03006616 Ensembl:ENSCAFT00000028820 Uniprot:E2RB54
Length = 601
Score = 137 (53.3 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 498 VLPRIKGLEEPMD-FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556
VL ++ +E + F + + G+++ + H + +Q + T+ F G I +LICT ++
Sbjct: 417 VLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLAR 476
Query: 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP--DKSLL 605
G+D + N +I D + ++++ GR GRA + A F+ DK LL
Sbjct: 477 GIDFKGVNLVINYDFPTSSVEYIHRI-GRTGRAGHKGKAVTFFTEDDKPLL 526
>DICTYBASE|DDB_G0269932 [details] [associations]
symbol:uap56 "ATP-dependent RNA helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0000348 "mRNA
branch site recognition" evidence=ISS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269932
GO:GO:0005524 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0005681 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12812 GO:GO:0000348 RefSeq:XP_646415.1
ProteinModelPortal:Q55CR6 SMR:Q55CR6 PRIDE:Q55CR6
EnsemblProtists:DDB0233387 GeneID:8617372 KEGG:ddi:DDB_G0269932
InParanoid:Q55CR6 OMA:GGANMNP ProtClustDB:CLSZ2429041
Uniprot:Q55CR6
Length = 428
Score = 133 (51.9 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 81/321 (25%), Positives = 136/321 (42%)
Query: 307 LIC-GDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLAKQHFDVVSERFSKY-PDI 361
+IC G GKT V + + + G +VL T LA Q D +RF+KY P++
Sbjct: 88 VICQAKSGMGKTAVFVLSTLQQIDNNPNGITTLVLCNTRELAYQICDEF-DRFTKYLPNV 146
Query: 362 KVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL-----LVVDE--- 413
K ++ + H D+IK NII+GT + L L ++DE
Sbjct: 147 KTAVI---YGGIPVQTHKDLIKEKKPNIIIGTPGRILQLASEGALSLKEIKQFILDECDT 203
Query: 414 -----EQRFGVKQKEKI--ASFKISVDVLTLSAT--PI-PRTLYLALTGF-RDASLISTP 462
+ R V++ K+ A+ ++ + TLS T PI + + L + D S ++
Sbjct: 204 MLESLDMRKDVQKIFKLIPANKQVMMFSATLSDTIRPICKKFMNNPLEIYINDGSKLTLH 263
Query: 463 PPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ-AFPGVDI 521
++ + ++ K K + + LD V +V ++ + LQ FP + I
Sbjct: 264 GLQQYYVP--ITEEQKNKKLIELLDSLDFNQAVIFV-KSVRRADALNKILQDIGFPSICI 320
Query: 522 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQ 581
H + E KF +I++ TNI G+DI+ N +I D+ + L++
Sbjct: 321 ---HRDLDQKDRIEQYRKFKNFESRIMVATNIFGRGIDIERVNVVINYDMAESADTYLHR 377
Query: 582 LRGRVGRADKEAHAYLFYPDK 602
+ GR GR + A F P K
Sbjct: 378 V-GRAGRFGTKGLAISFVPSK 397
>UNIPROTKB|F1NQA6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 EMBL:AADN02025730
IPI:IPI00822952 Ensembl:ENSGALT00000039070 ArrayExpress:F1NQA6
Uniprot:F1NQA6
Length = 603
Score = 135 (52.6 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 34/127 (26%), Positives = 66/127 (51%)
Query: 482 ISAIKYELDRGGQVFYVLPRIKGLEEPMD-FLQQAFPGVDIAIAHGQQYSRQLEETMEKF 540
++A++ EL + G VL ++ +E + F + + G+++ + H + +Q + + F
Sbjct: 394 LTAMR-ELVKKGFAPPVLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDNVVHSF 452
Query: 541 AQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP 600
G I +LICT ++ G+D + N +I D+ + ++++ GR GRA A F+
Sbjct: 453 RAGKIWVLICTALLARGIDFKGVNMVINYDLPTSAVEYIHRI-GRTGRAGHTGKAVTFFT 511
Query: 601 --DKSLL 605
DK LL
Sbjct: 512 EDDKPLL 518
>UNIPROTKB|E1C4M1 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AADN02025730 IPI:IPI00593921 ProteinModelPortal:E1C4M1
Ensembl:ENSGALT00000008815 ArrayExpress:E1C4M1 Uniprot:E1C4M1
Length = 604
Score = 135 (52.6 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 34/127 (26%), Positives = 66/127 (51%)
Query: 482 ISAIKYELDRGGQVFYVLPRIKGLEEPMD-FLQQAFPGVDIAIAHGQQYSRQLEETMEKF 540
++A++ EL + G VL ++ +E + F + + G+++ + H + +Q + + F
Sbjct: 395 LTAMR-ELVKKGFAPPVLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDNVVHSF 453
Query: 541 AQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP 600
G I +LICT ++ G+D + N +I D+ + ++++ GR GRA A F+
Sbjct: 454 RAGKIWVLICTALLARGIDFKGVNMVINYDLPTSAVEYIHRI-GRTGRAGHTGKAVTFFT 512
Query: 601 --DKSLL 605
DK LL
Sbjct: 513 EDDKPLL 519
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 135 (52.6 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 71/287 (24%), Positives = 126/287 (43%)
Query: 333 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392
Q +VLAPT LA Q + +++ FSK+ V +++ + + + L ++ G I+VG
Sbjct: 76 QILVLAPTRELAVQVAEAMTD-FSKHMR-GVNVVALYGGQ-RYDVQLRALRQGP-QIVVG 131
Query: 393 THSLLGSRVVYNNLGL-----LVVDEEQ---RFG-VKQKEKI-ASFKISVDVLTLSATPI 442
T L + L L LV+DE R G ++ E I A SAT +
Sbjct: 132 TPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSAT-M 190
Query: 443 PRTLYLALTGF-------RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQV 495
P + F R S ++T P T E ++ ++ E D +
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE-DFDAAI 249
Query: 496 FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555
+V + LE + L++ G + A +G E+T+E+ G + ILI T++
Sbjct: 250 IFVRTKNATLEVA-EALERN--GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306
Query: 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602
GLD++ + ++ D+ + ++++ GR GRA + A LF ++
Sbjct: 307 RGLDVERISLVVNYDIPMDSESYVHRI-GRTGRAGRAGRALLFVENR 352
>UNIPROTKB|Q81X23 [details] [associations]
symbol:comFA "ComF operon protein 1" species:1392 "Bacillus
anthracis" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 RefSeq:NP_847594.1 RefSeq:YP_022088.1
ProteinModelPortal:Q81X23 DNASU:1085024
EnsemblBacteria:EBBACT00000011980 EnsemblBacteria:EBBACT00000014569
GeneID:1085024 GeneID:2818579 KEGG:ban:BA_5426 KEGG:bar:GBAA_5426
PATRIC:18788476 HOGENOM:HOG000075153 KO:K02240 OMA:KTEMLFP
ProtClustDB:CLSK887960 BioCyc:BANT261594:GJ7F-5293-MONOMER
Uniprot:Q81X23
Length = 449
Score = 131 (51.2 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 75/333 (22%), Positives = 142/333 (42%)
Query: 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 345
Q+ A V + ++E+ +CG GKTE+ I + G++ + P +
Sbjct: 111 QELAAQGVIEAIKQKESFFIWAVCGA---GKTEMLFYGIEEALQKGERVCIATPRTDVV- 166
Query: 346 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNN 405
++V +P I V L EK+ L ++ TH LL Y
Sbjct: 167 --LELVPRLQEVFPSINVAALYGGSVDREKDAAL---------VVATTHQLLR---YYRA 212
Query: 406 LGLLVVDEEQRFG--VKQKEKIA---SFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 460
+++VDE F V Q + A + K + L+ATP + TG + ++S
Sbjct: 213 FHVMIVDEIDAFPYHVDQMLQYAVQQAMKEKAARIYLTATPDEKWKRNFRTGKQKGIIVS 272
Query: 461 TP---PPERLPIKTHLSAFSK----EKV----ISAIKYELDRGGQVFYVLPRIKGLEEPM 509
P +P+ + + K +K+ + +K +++ +F +P ++ +EE
Sbjct: 273 GRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMYVNKKYPIFLFVPHVRYIEE-- 330
Query: 510 DFLQQAFPGVDIAI--AHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ G+D I H + R+ E +E F +G I +L+ T I+E G+ ++N +
Sbjct: 331 --IGLLLKGLDHRIDGVHAEDPMRK--EKVEAFRKGDIPLLVTTTILERGVIVKNLQVAV 386
Query: 568 VQDVQQ-FGLAQLYQLRGRVGRADKEAHAYLFY 599
+ ++ F + L Q+ GR GR+ +E + + Y
Sbjct: 387 LGAEEEIFSESALVQIAGRAGRSFEEPYGEVVY 419
>TIGR_CMR|BA_5426 [details] [associations]
symbol:BA_5426 "comF operon protein 1" species:198094
"Bacillus anthracis str. Ames" [GO:0003674 "molecular_function"
evidence=ND] [GO:0030420 "establishment of competence for
transformation" evidence=ISS] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 RefSeq:NP_847594.1
RefSeq:YP_022088.1 ProteinModelPortal:Q81X23 DNASU:1085024
EnsemblBacteria:EBBACT00000011980 EnsemblBacteria:EBBACT00000014569
GeneID:1085024 GeneID:2818579 KEGG:ban:BA_5426 KEGG:bar:GBAA_5426
PATRIC:18788476 HOGENOM:HOG000075153 KO:K02240 OMA:KTEMLFP
ProtClustDB:CLSK887960 BioCyc:BANT261594:GJ7F-5293-MONOMER
Uniprot:Q81X23
Length = 449
Score = 131 (51.2 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 75/333 (22%), Positives = 142/333 (42%)
Query: 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 345
Q+ A V + ++E+ +CG GKTE+ I + G++ + P +
Sbjct: 111 QELAAQGVIEAIKQKESFFIWAVCGA---GKTEMLFYGIEEALQKGERVCIATPRTDVV- 166
Query: 346 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNN 405
++V +P I V L EK+ L ++ TH LL Y
Sbjct: 167 --LELVPRLQEVFPSINVAALYGGSVDREKDAAL---------VVATTHQLLR---YYRA 212
Query: 406 LGLLVVDEEQRFG--VKQKEKIA---SFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 460
+++VDE F V Q + A + K + L+ATP + TG + ++S
Sbjct: 213 FHVMIVDEIDAFPYHVDQMLQYAVQQAMKEKAARIYLTATPDEKWKRNFRTGKQKGIIVS 272
Query: 461 TP---PPERLPIKTHLSAFSK----EKV----ISAIKYELDRGGQVFYVLPRIKGLEEPM 509
P +P+ + + K +K+ + +K +++ +F +P ++ +EE
Sbjct: 273 GRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMYVNKKYPIFLFVPHVRYIEE-- 330
Query: 510 DFLQQAFPGVDIAI--AHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ G+D I H + R+ E +E F +G I +L+ T I+E G+ ++N +
Sbjct: 331 --IGLLLKGLDHRIDGVHAEDPMRK--EKVEAFRKGDIPLLVTTTILERGVIVKNLQVAV 386
Query: 568 VQDVQQ-FGLAQLYQLRGRVGRADKEAHAYLFY 599
+ ++ F + L Q+ GR GR+ +E + + Y
Sbjct: 387 LGAEEEIFSESALVQIAGRAGRSFEEPYGEVVY 419
>UNIPROTKB|F1MGC9 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 OMA:HIDQTPG GeneTree:ENSGT00550000075141
EMBL:DAAA02044956 IPI:IPI01003566 ProteinModelPortal:F1MGC9
Ensembl:ENSBTAT00000022893 Uniprot:F1MGC9
Length = 546
Score = 115 (45.5 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L QAF GV +A + Q + +++F QG I++LI T+ + G+D+Q ++ D
Sbjct: 403 LVQAFGGVTVAEFSSRYGPGQRKSILKQFEQGKIQLLISTDAMARGIDVQGVQLVVNYDA 462
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAY 596
Q+ ++++ GR RA K A+
Sbjct: 463 PQYLRTYVHRV-GRTARAGKSGQAF 486
Score = 64 (27.6 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 303 PMDRLICGDVGFGKTEV----ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 358
P D + G GKT ++A+ +A+V+ PT LA+Q VS+ F+ Y
Sbjct: 126 PSDLCVSAPTGSGKTLAFVIPVVQALLHRAVCQVRALVVLPTKELAQQ----VSKVFNVY 181
Query: 359 PD---IKVGLLSRFQSKAEKEEHL 379
D ++V L++ +S A+++E L
Sbjct: 182 TDATPLRVALITGQKSLAKEQESL 205
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 132 (51.5 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 78/311 (25%), Positives = 127/311 (40%)
Query: 313 GFGKTEV-ALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGL-LSRF 369
G GKT AL + V S Q +VLAPT LA Q V+E FS Y +
Sbjct: 53 GTGKTGAFALPLLNKVTSQTTPQILVLAPTRELAVQ----VAEAFSSYAKFMKNFHVLPI 108
Query: 370 QSKAEKEEHLDMIKHGHLNIIVGT------HSLLGSRVVYNNLGLLVVDEEQ---RFG-V 419
++ L+ +K G +IVGT H G+ + L LV+DE + G +
Sbjct: 109 YGGQSMQQQLNALKRGP-QVIVGTPGRVMDHMRRGT-LKLETLQALVLDEADEMLKMGFI 166
Query: 420 KQKEKIASFKISVDVLTLSATPIPRTLY-LALTGFRDASLISTPPPERL--PIKTHLSAF 476
E I L L + +P + +A ++A+ IS I+
Sbjct: 167 DDIEWILEHTPPQRQLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQV 226
Query: 477 SKEKVISAIKYELD---RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQL 533
S+ + A+ L+ G + +V R E + L+ G + HG +
Sbjct: 227 SQHNKLEALVRVLEVENTEGIIIFVRTR-NSCVELAEKLEAR--GYASSPLHGDMNQQAR 283
Query: 534 EETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEA 593
E +E+ G + ILI T++ GLD++ ++ D+ A ++++ GR GRA +
Sbjct: 284 ERAVEQLKNGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRI-GRTGRAGRTG 342
Query: 594 HAYLFYPDKSL 604
A LF + +
Sbjct: 343 MAILFVTSREM 353
>GENEDB_PFALCIPARUM|PF14_0655 [details] [associations]
symbol:PF14_0655 "RNA helicase-1, putative"
species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003743 "translation initiation factor activity"
evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 129 (50.5 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 71/285 (24%), Positives = 125/285 (43%)
Query: 333 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392
QA++LAPT LA+Q VV Y +KV + +E+ +D +K G ++++VG
Sbjct: 93 QALILAPTRELAQQIQKVVLA-LGDY--LKVKCHACVGGTVVRED-IDKLKQG-VHMVVG 147
Query: 393 T----HSLLGSRVV-YNNLGLLVVDEEQRF---GVKQK--EKIASFKISVDVLTLSATPI 442
T + ++ R + + L L ++DE G K + E + V SAT +
Sbjct: 148 TPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQVALFSAT-M 206
Query: 443 PRTLYLALTGF-RDASLISTPPPERL--PIKTHLSAFSKEK-VISAI--KYE-LDRGGQV 495
P+ + T F RD I E I+ A KE+ + + YE L +
Sbjct: 207 PQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCDLYETLTITQSI 266
Query: 496 FYVLPRIKGLEEPMDFLQQAFPG--VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI 553
Y R K +D L Q ++ HG + + M +F G+ ++L+ T++
Sbjct: 267 IYCNTRKK-----VDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDL 321
Query: 554 VESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLF 598
+ G+D+Q + +I D+ ++++ GR GR ++ A F
Sbjct: 322 LARGIDVQQVSLVINYDLPASPDTYIHRI-GRSGRFGRKGVAINF 365
>UNIPROTKB|Q8IKF0 [details] [associations]
symbol:H45 "Helicase 45" species:36329 "Plasmodium
falciparum 3D7" [GO:0006446 "regulation of translational
initiation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 129 (50.5 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 71/285 (24%), Positives = 125/285 (43%)
Query: 333 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392
QA++LAPT LA+Q VV Y +KV + +E+ +D +K G ++++VG
Sbjct: 93 QALILAPTRELAQQIQKVVLA-LGDY--LKVKCHACVGGTVVRED-IDKLKQG-VHMVVG 147
Query: 393 T----HSLLGSRVV-YNNLGLLVVDEEQRF---GVKQK--EKIASFKISVDVLTLSATPI 442
T + ++ R + + L L ++DE G K + E + V SAT +
Sbjct: 148 TPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQVALFSAT-M 206
Query: 443 PRTLYLALTGF-RDASLISTPPPERL--PIKTHLSAFSKEK-VISAI--KYE-LDRGGQV 495
P+ + T F RD I E I+ A KE+ + + YE L +
Sbjct: 207 PQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCDLYETLTITQSI 266
Query: 496 FYVLPRIKGLEEPMDFLQQAFPG--VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI 553
Y R K +D L Q ++ HG + + M +F G+ ++L+ T++
Sbjct: 267 IYCNTRKK-----VDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDL 321
Query: 554 VESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLF 598
+ G+D+Q + +I D+ ++++ GR GR ++ A F
Sbjct: 322 LARGIDVQQVSLVINYDLPASPDTYIHRI-GRSGRFGRKGVAINF 365
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 134 (52.2 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 71/291 (24%), Positives = 121/291 (41%)
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
G A+ LAPT LA Q + + + ++SKY +K +L K++ +K G II
Sbjct: 378 GPIALFLAPTRELAHQIY-LETLKYSKYFKLKTTVL---YGGVSKQQQCKELKAG-CEII 432
Query: 391 VGTHSLLGSRVVY-----NNLGLLVVDEEQR-----FGVKQKEKIASFKISVDVLTLSAT 440
V T L + N + LV+DE + FG + + + L SAT
Sbjct: 433 VATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLFSAT 492
Query: 441 PIPRTLYLALTGFRDA-----SLISTPPPERLPIKTHLSAFSKEK--VISAIKYELDRGG 493
P A T D +I + + I L + S + + + + L +G
Sbjct: 493 FKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQLALLLSQGS 552
Query: 494 QVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI 553
+ +V ++ +E+ L + F G HG + + +T++ F +G I ILI T++
Sbjct: 553 VLIFVSTKV-AVEQLSSNLTK-F-GFQTCTLHGDKNQIERSQTIQTFKEGKINILIATDV 609
Query: 554 VESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604
GLDI ++ D + + +++ GR GRA AY K +
Sbjct: 610 AARGLDIPLIKNVVNYDTSRDIESHTHRI-GRTGRAGNTGVAYTLITPKDI 659
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 131 (51.2 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 66/297 (22%), Positives = 129/297 (43%)
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKY-----PDIKVGLLSRFQSKAEKEEHLDMIK 383
S G +++ P+ LA+Q FD++ E F P+++ GL E+ + ++
Sbjct: 264 SEGPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKD---VR 320
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGL-----LVVDEEQRF-GVKQKEKIAS----FKISVD 433
G ++I+V T L + + L LV+DE R + +++I S FK
Sbjct: 321 DG-IHIVVATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQ 379
Query: 434 VLTLSATPIPRTL-YLALTGFRDASLIST--PPPERLPIKTHLSAF-SKEKVISAIKYEL 489
L SAT +PR + + A + +++ L + L S+ K++ ++
Sbjct: 380 TLLFSAT-MPRKIQFFAKSALVKPIVVNVGRAGAASLNVLQELEFVRSENKLVRVLECLQ 438
Query: 490 DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILI 549
+V + ++ ++L GV++A HG + +E F + +L+
Sbjct: 439 KTSPKVLIFAEKKVDVDNIYEYL--LVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLV 496
Query: 550 CTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLS 606
T++ GLD Q +I D+ + ++++ GR GR+ ++ A F KS +S
Sbjct: 497 ATDVASKGLDFQGIEHVINFDMPEDIENYVHRI-GRTGRSGRKGLATTFINKKSEMS 552
>MGI|MGI:1916913 [details] [associations]
symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 51"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1916913 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
KO:K14807 OMA:HIDQTPG GeneTree:ENSGT00550000075141 CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 OrthoDB:EOG4JM7PM
EMBL:AK152599 EMBL:BC060646 IPI:IPI00396728 RefSeq:NP_081432.2
UniGene:Mm.392735 UniGene:Mm.5267 ProteinModelPortal:Q6P9R1
SMR:Q6P9R1 PhosphoSite:Q6P9R1 PaxDb:Q6P9R1 PRIDE:Q6P9R1
Ensembl:ENSMUST00000031478 GeneID:69663 KEGG:mmu:69663
UCSC:uc008yre.2 InParanoid:Q6P9R1 ChiTaRS:DDX51 NextBio:330022
Bgee:Q6P9R1 CleanEx:MM_DDX51 Genevestigator:Q6P9R1
GermOnline:ENSMUSG00000029504 Uniprot:Q6P9R1
Length = 639
Score = 117 (46.2 bits), Expect = 9.7e-05, Sum P(3) = 9.7e-05
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L QAF GV +A + Q ++ +++F QG I++LI T+ G+D+Q +I D
Sbjct: 496 LAQAFGGVSVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATARGIDVQGVELVINYDA 555
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAY 596
Q+ ++++ GR RA K A+
Sbjct: 556 PQYLRTYVHRV-GRTARAGKTGQAF 579
Score = 65 (27.9 bits), Expect = 9.7e-05, Sum P(3) = 9.7e-05
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 303 PMDRLICGDVGFGKTEV----ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 358
P D + G GKT ++A+ V +A+V+ PT LA+Q VS+ F+ Y
Sbjct: 221 PSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKELAQQ----VSKVFNIY 276
Query: 359 PD---IKVGLLSRFQSKAEKEEHL 379
D ++V L++ +S A+++E L
Sbjct: 277 TDTTPLRVALVTGQKSLAKEQESL 300
Score = 38 (18.4 bits), Expect = 9.7e-05, Sum P(3) = 9.7e-05
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 55 SSPTSKKPTQRREKNENETD 74
++P S+ P +R K + + D
Sbjct: 80 ATPNSEAPRAKRRKADKDVD 99
>WB|WBGene00011032 [details] [associations]
symbol:R05D11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
OMA:NVMKQSG EMBL:Z75546 PIR:T23922 RefSeq:NP_492326.1
ProteinModelPortal:Q21736 SMR:Q21736 STRING:Q21736 PaxDb:Q21736
EnsemblMetazoa:R05D11.4.1 EnsemblMetazoa:R05D11.4.2 GeneID:172651
KEGG:cel:CELE_R05D11.4 UCSC:R05D11.4 CTD:172651 WormBase:R05D11.4
InParanoid:Q21736 NextBio:876429 Uniprot:Q21736
Length = 581
Score = 133 (51.9 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 28/86 (32%), Positives = 52/86 (60%)
Query: 519 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQ 578
VD +I G+ ++ +ETME+F +G I +L+CT ++ GLD+ + +I D+ ++
Sbjct: 402 VD-SINSGKS-DKERDETMERFRRGEIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSY 459
Query: 579 LYQLRGRVGRADKEAHAYLFYPDKSL 604
++++ GR GRA K HA ++ D +
Sbjct: 460 IHRV-GRTGRAGKSGHAVTYFTDADM 484
Score = 43 (20.2 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 345 KQHFDVVSERFSKYPDIKVGLLSRFQSKAEKE 376
K+ + E +Y +++ ++ + +SK EK+
Sbjct: 29 KELSTITEESLRRYDELREKMIGKVESKIEKK 60
>ASPGD|ASPL0000037981 [details] [associations]
symbol:AN2932 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
Uniprot:Q5B948
Length = 398
Score = 127 (49.8 bits), Expect = 0.00010, P = 0.00010
Identities = 76/310 (24%), Positives = 142/310 (45%)
Query: 313 GFGKTEV----ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR 368
G GKT AL+ + V A QA+++APT LA+Q VV + +I+
Sbjct: 72 GTGKTATFSISALQKLDPNVKAC-QALIVAPTRELAQQIQKVVIA-IGDFMNIQCHAC-- 127
Query: 369 FQSKAEKEEHLDMIKHGHLNIIVGT----HSLLGSRVVYNN-LGLLVVDE-EQRFGVKQK 422
A +++ ++ ++ G I+VGT H ++ RV+ + + + ++DE ++
Sbjct: 128 IGGTAVRDD-MNALREGP-QIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEMLSRGFT 185
Query: 423 EKIAS-FKI---SVDVLTLSATPIPRTLYLALTGF-RDASLISTPPPERL--PIKTHLSA 475
E+I F++ S V+ LSAT +P+ + T F RD I E IK A
Sbjct: 186 EQIYDIFQLLPQSTQVVLLSAT-MPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIA 244
Query: 476 FSKEKVISAIKYELDRGGQVFYVLPRIKGL-----EEPMDFLQQAFPGVDIAIA--HGQQ 528
KE+ ++LD ++ + + + +D+L D ++ HG
Sbjct: 245 VEKEE------WKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDM 298
Query: 529 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGR 588
Q + M++F G+ ++LI T+++ G+D+Q + +I D+ ++++ GR GR
Sbjct: 299 EQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRI-GRGGR 357
Query: 589 ADKEAHAYLF 598
++ A F
Sbjct: 358 FGRKGVAINF 367
>RGD|621743 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:621743
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
CTD:11056 GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AB055628 IPI:IPI00201365 RefSeq:NP_445977.1 UniGene:Rn.18605
ProteinModelPortal:Q99PT0 SMR:Q99PT0 PRIDE:Q99PT0
Ensembl:ENSRNOT00000003600 GeneID:85432 KEGG:rno:85432
InParanoid:Q99PT0 NextBio:617542 Genevestigator:Q99PT0
GermOnline:ENSRNOG00000002612 Uniprot:Q99PT0
Length = 598
Score = 139 (54.0 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 498 VLPRIKGLEEPMD-FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556
VL ++ +E + F + + G+++ + H ++ +Q + T+ F G I +LICT ++
Sbjct: 416 VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLAR 475
Query: 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP--DKSLL 605
G+D + N +I D + ++++ GR GRA A F+ DK LL
Sbjct: 476 GIDFKGVNLVINYDFPTSSVEYIHRI-GRTGRAGNRGKAVTFFTEDDKPLL 525
Score = 37 (18.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 53 SLSSPTSKKPTQRREKNENETDDISILNERIRRDFGKREATRPVMDSEEADKYIQ 107
S+S TQ+ +NE T+ + + + +++ T V E+ D IQ
Sbjct: 54 SVSDECGGLQTQQELQNEETTEGGLLERSKEPKKKKRKKMTADVPAQEDLDGTIQ 108
>FB|FBgn0001942 [details] [associations]
symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
"Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0006413 "translational initiation"
evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
factor 4F complex" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
"instar larval development" evidence=TAS] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
Uniprot:Q02748
Length = 403
Score = 127 (49.8 bits), Expect = 0.00010, P = 0.00010
Identities = 80/318 (25%), Positives = 138/318 (43%)
Query: 313 GFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRF 369
G GKT AI + QA++LAPT LA Q VV +Y +KV +
Sbjct: 77 GTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMA-LGEY--MKVHSHACI 133
Query: 370 QSKAEKEEHLDMIKHGHLNIIVGT----HSLLGSRVVYNN-LGLLVVDE-EQRFGVKQKE 423
+E+ +++ G +++VGT + ++ +V+ + L V+DE ++ K+
Sbjct: 134 GGTNVRED-ARILESG-CHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKD 191
Query: 424 KIAS-FKI---SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL--PIKTHLSAFS 477
+I FK+ V V+ LSAT P L ++ RD I E IK
Sbjct: 192 QIQDVFKMLPPDVQVILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVK 251
Query: 478 KEK----VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ--AFPGVDIAIAHGQQYSR 531
+E + + L V + R K +D L Q + ++ HG R
Sbjct: 252 QENWKLGTLCDLYDTLSITQSVIFCNTRRK-----VDQLTQEMSIHNFTVSAMHGDMEQR 306
Query: 532 QLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK 591
E M++F G+ ++LI T+++ G+D+Q + +I D+ ++++ GR GR +
Sbjct: 307 DREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRI-GRGGRFGR 365
Query: 592 EAHAYLFYPD--KSLLSD 607
+ A F D + +L D
Sbjct: 366 KGVAINFITDDDRRILKD 383
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 131 (51.2 bits), Expect = 0.00011, P = 0.00011
Identities = 90/349 (25%), Positives = 144/349 (41%)
Query: 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVL 337
PTP Q+K + R D + G GKT L +F + A G +A++L
Sbjct: 59 PTPIQRKTIPVILRG-------RDVVAMARTGSGKTACFLLPMFERLKAPSPSGARALIL 111
Query: 338 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 397
+PT LA Q E K+ +K L+ +K E H + +II+ T L
Sbjct: 112 SPTRELALQTLKFTKE-LGKFTGLKTALVLG----GDKMEDQFAALHENPDIIIATPGRL 166
Query: 398 GSRVVYNNLGL-----LVVDEEQR-----FGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
V NL L +V DE R F + +E +A S + SAT +P+ L
Sbjct: 167 VHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEILARLPGSHQTVLFSAT-LPKLLV 225
Query: 448 -LALTGFRDASLISTPPPERLPIKTHLSAF---SKEK---VISAIKYELDRGGQ-VFYVL 499
A G + LI +L + L+ F +K ++ ++ + Q V +V
Sbjct: 226 EFARAGLTEPMLIRLDVESKLSEQLKLAFFHVRGDDKPAVLLHLLRCVVKPQDQTVVFVA 285
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEET-----MEKFAQGAIKILICTNIV 554
+ ++L++ I H YS L++T + KFA G ++L+ T++
Sbjct: 286 TK-----HHTEYLKELLTSQGICCTH--IYS-SLDQTARKINIAKFAHGKCQVLLVTDVA 337
Query: 555 ESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAY-LFYPDK 602
GLDI + +I L+++ GRV RA + AY L PD+
Sbjct: 338 ARGLDIPMLDNVINYSFPAKSKLFLHRV-GRVARAGRSGTAYSLVAPDE 385
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 128 (50.1 bits), Expect = 0.00011, P = 0.00011
Identities = 83/301 (27%), Positives = 130/301 (43%)
Query: 333 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392
QA+V+APT LA Q VSE K K + + + +K NIIVG
Sbjct: 73 QAIVIAPTRELAIQ----VSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNP-NIIVG 127
Query: 393 THSLL----GSRVV-YNNLGLLVVDE-EQRFGVKQKEKIASFKISV----DVLTLSATPI 442
T L R + NN+ +V+DE ++ + + I S +V L SAT +
Sbjct: 128 TPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSAT-M 186
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK-YELD-RGGQVFYVLP 500
P + R A T P E + +K +KE +S I+ + L+ + + F L
Sbjct: 187 PAPIK------RIAERFMTEP-EHVKVK------AKEMTVSNIQQFYLEVQERKKFDTLT 233
Query: 501 RIKGLEEP------------MDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIK 546
R+ ++ P +D L +A G HG + + KF +GAI+
Sbjct: 234 RLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIE 293
Query: 547 ILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY-P-DKSL 604
+L+ T++ GLDI + DV Q + ++++ GR GRA K A F P +KS+
Sbjct: 294 VLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRI-GRTGRAGKTGMAMTFITPREKSM 352
Query: 605 L 605
L
Sbjct: 353 L 353
>RGD|1309580 [details] [associations]
symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 51"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309580 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:HIDQTPG OrthoDB:EOG4JM7PM IPI:IPI00371200
Ensembl:ENSRNOT00000056729 UCSC:RGD:1309580 ArrayExpress:D3ZQ94
Uniprot:D3ZQ94
Length = 635
Score = 117 (46.2 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L QAF GV +A + Q ++ +++F QG I++LI T+ G+D+Q +I D
Sbjct: 492 LAQAFGGVSVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATARGIDVQGVELVINYDA 551
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAY 596
Q+ ++++ GR RA K A+
Sbjct: 552 PQYLRTYVHRV-GRTARAGKTGQAF 575
Score = 65 (27.9 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 303 PMDRLICGDVGFGKTEV----ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 358
P D + G GKT ++A+ V +A+V+ PT LA+Q VS+ F+ Y
Sbjct: 217 PSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKELAQQ----VSKVFNIY 272
Query: 359 PD---IKVGLLSRFQSKAEKEEHL 379
D ++V L++ +S A+++E L
Sbjct: 273 TDTTPLRVALVTGQKSLAKEQESL 296
Score = 37 (18.1 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 54 LSSPTSKKPTQRREKNENETDDI 76
+S ++KP R K + DD+
Sbjct: 72 VSGSVAEKPEAPRAKRQKVEDDV 94
>UNIPROTKB|Q4K4K3 [details] [associations]
symbol:dbpA "ATP-independent RNA helicase DbpA"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 OMA:THEKSTI RefSeq:YP_262830.1
ProteinModelPortal:Q4K4K3 STRING:Q4K4K3 GeneID:3480144
KEGG:pfl:PFL_5772 PATRIC:19881049
BioCyc:PFLU220664:GIX8-5812-MONOMER Uniprot:Q4K4K3
Length = 461
Score = 127 (49.8 bits), Expect = 0.00013, P = 0.00013
Identities = 79/311 (25%), Positives = 129/311 (41%)
Query: 304 MDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLAKQHFDVVSERFSKYPD 360
MD + G GKT + ++ G QA+V+ PT LA Q V R ++ D
Sbjct: 44 MDLIAQAKTGSGKTAAFGIGLLNPINPRYFGCQALVICPTRELADQVAKEV-RRLARAED 102
Query: 361 -IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT------HSLLGSRVVYNNLGLLVVDE 413
IKV L S + + ++HG +IIVGT H GS +V + L LV+DE
Sbjct: 103 NIKVLTLCGGVSFGPQ---IASLEHG-AHIIVGTPGRIQQHLRKGS-LVLDGLNTLVLDE 157
Query: 414 EQRF---GVKQ--KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPP-PERL 467
R G ++ I L SAT LA RD + +
Sbjct: 158 ADRMLDMGFYDAIEDIIEKTPSRRQTLLFSATYPVGIKQLASKFMRDPQTVKAEAFHDDT 217
Query: 468 PIKTHLSAFSKEKVISAIKYELDR---GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA 524
I+ S E+ +SA+ L V + + + ++E +D L G+
Sbjct: 218 QIEQRFYEISPEERMSAVTKVLHHFRPASCVAFCFTK-QQVQETVDHLTAK--GISAVGL 274
Query: 525 HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRG 584
HG R ++ + FA + +L+ T++ GLDI + +I ++ + ++++ G
Sbjct: 275 HGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDIDALDMVINVELARDSEIHIHRV-G 333
Query: 585 RVGRADKEAHA 595
R GRA ++ A
Sbjct: 334 RTGRAGEKGIA 344
>TAIR|locus:2148027 [details] [associations]
symbol:UAP56b "homolog of human UAP56 b" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005618
"cell wall" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0009506 GO:GO:0005524 EMBL:CP002688
GO:GO:0005618 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
UniGene:At.49007 UniGene:At.73904 GeneID:830990 KEGG:ath:AT5G11200
OMA:LECVINY IPI:IPI00938969 RefSeq:NP_001154706.1
ProteinModelPortal:F4JWF6 SMR:F4JWF6 PRIDE:F4JWF6
EnsemblPlants:AT5G11200.2 Uniprot:F4JWF6
Length = 486
Score = 97 (39.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 34/131 (25%), Positives = 57/131 (43%)
Query: 473 LSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQ 532
LS K + ++ + LD V +V + E ++ FP I I G +
Sbjct: 329 LSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPS--ICIHSGMSQEER 386
Query: 533 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE 592
L + F +G +IL+ T++V G+DI+ N +I D+ L+++ GR GR +
Sbjct: 387 LTR-YKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRV-GRAGRFGTK 444
Query: 593 AHAYLFYPDKS 603
A F S
Sbjct: 445 GLAITFVASAS 455
Score = 77 (32.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 35/97 (36%), Positives = 50/97 (51%)
Query: 304 MDRLIC-GDVGFGKTEVALRAIFCVV--SAGK-QAMVLAPTIVLAKQHFDVVSE--RFSK 357
MD +IC G GKT V + + + S G+ A+VL T LA Q + +E RFS
Sbjct: 84 MD-VICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQ---ICNEFVRFST 139
Query: 358 Y-PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 393
Y PD KV + F + H D++K+ +I+VGT
Sbjct: 140 YLPDTKVSV---FYGGVNIKIHKDLLKNECPHIVVGT 173
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 130 (50.8 bits), Expect = 0.00015, P = 0.00015
Identities = 89/345 (25%), Positives = 137/345 (39%)
Query: 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-----GKQAMV 336
PTP Q+K + V D D + G GKT L +F + A G +A++
Sbjct: 118 PTPIQRKT-IPVILD------GKDVVAMARTGSGKTACFLLPMFERLKARSAQTGARALI 170
Query: 337 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 396
L+PT LA Q E K+ +K L+ +K E H + +II+ T
Sbjct: 171 LSPTRELALQTMKFTKE-LGKFTGLKTALILG----GDKMEDQFAALHENPDIIIATPGR 225
Query: 397 LGSRVVYNNLGL-----LVVDEEQR-----FGVKQKEKIASFKISVDVLTLSATPIPRTL 446
L V NL L +V DE R F + +E I + SAT +P+ L
Sbjct: 226 LVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFSAT-LPKLL 284
Query: 447 Y-LALTGFRDASLISTPPPERL--PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
A G + LI +L +KT ++ + + Y L +
Sbjct: 285 VEFARAGLTEPVLIRLDVDSKLNEQLKTSFLLVREDTKAAVLLYLLQNVVRPQDQTVVFV 344
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEET-----MEKFAQGAIKILICTNIVESGL 558
+ ++L + G ++ AH YS L++T + KF LI T++ GL
Sbjct: 345 ATKHHAEYLTELLMGQGVSCAH--IYSA-LDQTARKINLAKFTHNKCSTLIVTDLAARGL 401
Query: 559 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAY-LFYPDK 602
DI + +I G L+++ GRV RA + AY L PD+
Sbjct: 402 DIPLLDNVINYSFPAKGKLFLHRV-GRVARAGRSGTAYSLVAPDE 445
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 126 (49.4 bits), Expect = 0.00016, P = 0.00016
Identities = 74/309 (23%), Positives = 130/309 (42%)
Query: 313 GFGKTEVALRAIFCVV---SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRF 369
G GKT + I + S+ QA+++APT LA Q + + + DI V +
Sbjct: 52 GTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGG 111
Query: 370 QSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRVVYNNLGLLVVDEEQR---FGVKQ 421
Q A++ L +K G+ +I+V T L + +NL +V+DE + FG
Sbjct: 112 QDVAQQ---LRKLK-GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLY 167
Query: 422 --KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTH----LSA 475
++ + S + SAT IP+ + + D + E + + T +
Sbjct: 168 DIEDILDETPGSKQTMLFSAT-IPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET 226
Query: 476 FSKEKVISAIKYELDRGGQVFYVL-PRIKGLEEPM-DFLQQAFPGVDIAIAHGQQYSRQL 533
+ K A+++ +DR V+ R K + D L+ G + A HG +
Sbjct: 227 TDRAKP-DALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL--GYNCAELHGDIPQAKR 283
Query: 534 EETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEA 593
E M+ F + I+ LI T++ GLD+ + D+ + + ++++ GR GRA
Sbjct: 284 ERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRI-GRTGRAGGSG 342
Query: 594 HAYLFYPDK 602
A F K
Sbjct: 343 LAITFVAAK 351
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 126 (49.4 bits), Expect = 0.00016, P = 0.00016
Identities = 74/309 (23%), Positives = 130/309 (42%)
Query: 313 GFGKTEVALRAIFCVV---SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRF 369
G GKT + I + S+ QA+++APT LA Q + + + DI V +
Sbjct: 52 GTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGG 111
Query: 370 QSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRVVYNNLGLLVVDEEQR---FGVKQ 421
Q A++ L +K G+ +I+V T L + +NL +V+DE + FG
Sbjct: 112 QDVAQQ---LRKLK-GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLY 167
Query: 422 --KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTH----LSA 475
++ + S + SAT IP+ + + D + E + + T +
Sbjct: 168 DIEDILDETPGSKQTMLFSAT-IPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIET 226
Query: 476 FSKEKVISAIKYELDRGGQVFYVL-PRIKGLEEPM-DFLQQAFPGVDIAIAHGQQYSRQL 533
+ K A+++ +DR V+ R K + D L+ G + A HG +
Sbjct: 227 TDRAKP-DALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL--GYNCAELHGDIPQAKR 283
Query: 534 EETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEA 593
E M+ F + I+ LI T++ GLD+ + D+ + + ++++ GR GRA
Sbjct: 284 ERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRI-GRTGRAGGSG 342
Query: 594 HAYLFYPDK 602
A F K
Sbjct: 343 LAITFVAAK 351
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 126 (49.4 bits), Expect = 0.00016, P = 0.00016
Identities = 75/311 (24%), Positives = 127/311 (40%)
Query: 310 GDVGFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLL 366
G G GKT + + + Q +VL PT LA Q + ++KV L
Sbjct: 45 GKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTL 104
Query: 367 SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRVVYNNLGLLVVDEEQRF---G 418
+ ++HG +IIVGT + +R+ +NL +LV+DE R G
Sbjct: 105 C---GGVPMGPQIGSLEHG-AHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMG 160
Query: 419 VK-QKEKIASFKISV-DVLTLSATPIPRTLY-LALTGFRDASLISTPPP-ERLPIKTHLS 474
+ Q + I L SAT P + +A + ++ E+ I+ H
Sbjct: 161 FQPQLDAIIEQSPRERQTLLFSAT-FPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFY 219
Query: 475 AFSKEKV-ISAIKYEL-DRGGQVFYVLPRIKG-LEEPMDFLQQAFPGVDIAIAHGQQYSR 531
+K + A++ L + + V K ++ D L+ G + HG R
Sbjct: 220 QLDDDKSRMQALQLLLLEHKPESAVVFCNTKRETQKVADELEGL--GFSVLALHGDLEQR 277
Query: 532 QLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK 591
+ET+ +FA + +L+ T++ GLDI + + V ++++ GR GRA
Sbjct: 278 DRDETLLQFANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRI-GRTGRAGS 336
Query: 592 EAHAYLFYPDK 602
+ AY FY D+
Sbjct: 337 KGAAYTFYNDQ 347
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 126 (49.4 bits), Expect = 0.00016, P = 0.00016
Identities = 75/311 (24%), Positives = 127/311 (40%)
Query: 310 GDVGFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLL 366
G G GKT + + + Q +VL PT LA Q + ++KV L
Sbjct: 45 GKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTL 104
Query: 367 SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRVVYNNLGLLVVDEEQRF---G 418
+ ++HG +IIVGT + +R+ +NL +LV+DE R G
Sbjct: 105 C---GGVPMGPQIGSLEHG-AHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMG 160
Query: 419 VK-QKEKIASFKISV-DVLTLSATPIPRTLY-LALTGFRDASLISTPPP-ERLPIKTHLS 474
+ Q + I L SAT P + +A + ++ E+ I+ H
Sbjct: 161 FQPQLDAIIEQSPRERQTLLFSAT-FPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFY 219
Query: 475 AFSKEKV-ISAIKYEL-DRGGQVFYVLPRIKG-LEEPMDFLQQAFPGVDIAIAHGQQYSR 531
+K + A++ L + + V K ++ D L+ G + HG R
Sbjct: 220 QLDDDKSRMQALQLLLLEHKPESAVVFCNTKRETQKVADELEGL--GFSVLALHGDLEQR 277
Query: 532 QLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK 591
+ET+ +FA + +L+ T++ GLDI + + V ++++ GR GRA
Sbjct: 278 DRDETLLQFANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRI-GRTGRAGS 336
Query: 592 EAHAYLFYPDK 602
+ AY FY D+
Sbjct: 337 KGAAYTFYNDQ 347
>UNIPROTKB|E2R5R1 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 KO:K14807 OMA:HIDQTPG GeneTree:ENSGT00550000075141
CTD:317781 EMBL:AAEX03014583 RefSeq:XP_543351.2
Ensembl:ENSCAFT00000010222 GeneID:486226 KEGG:cfa:486226
Uniprot:E2R5R1
Length = 631
Score = 105 (42.0 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L QAF GV A + Q + +++F QG I++LI T+ + G+D+Q +I D
Sbjct: 488 LVQAFGGVAAAEFSSRCRPGQRKVVLKQFEQGKIQLLISTDAMARGIDVQGVQLVINYDA 547
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAY 596
Q+ ++++ GR RA + A+
Sbjct: 548 PQYLRTYVHRV-GRTARAGRTGQAF 571
Score = 71 (30.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 303 PMDRLICGDVGFGKTEV----ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 358
P D + G GKT ++A+ C +A+V+ PT LA+Q VS+ F+ Y
Sbjct: 213 PSDLCVSAPTGSGKTLAFVIPVVQALLCRAVCQVRALVVLPTKELAQQ----VSKVFNIY 268
Query: 359 PD---IKVGLLSRFQSKAEKEEHL 379
D ++V L++ +S +++E L
Sbjct: 269 TDATPLRVALITGQKSLVKEQESL 292
>TIGR_CMR|CPS_4366 [details] [associations]
symbol:CPS_4366 "primosomal protein N'" species:167879
"Colwellia psychrerythraea 34H" [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0003688 "DNA replication origin binding"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001650 InterPro:IPR005259 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1198 HOGENOM:HOG000037413
KO:K04066 OMA:ERQTMQL TIGRFAMs:TIGR00595 RefSeq:YP_271015.1
ProteinModelPortal:Q47W07 STRING:Q47W07 DNASU:3519516
GeneID:3519516 KEGG:cps:CPS_4366 PATRIC:21471577
BioCyc:CPSY167879:GI48-4375-MONOMER Uniprot:Q47W07
Length = 736
Score = 121 (47.7 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 40/147 (27%), Positives = 70/147 (47%)
Query: 307 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLL 366
LI G G GKTEV L+++ V++ +Q +V+ P I L Q + +RF+ + + L
Sbjct: 229 LIDGVTGSGKTEVYLQSMEEVLANNQQVLVIVPEIGLTPQTLNRFEQRFN----VPIALH 284
Query: 367 SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIA 426
+ E+ + G I++GT S + + + + LGL+++DEE +KQ++
Sbjct: 285 HSGLNDKERLATWLSAQQGSAAIVIGTRSAVFTPL--HRLGLIIIDEEHDSSLKQQDSFR 342
Query: 427 SFKISVDVLTLSATPIPRTLYLALTGF 453
+ +L IP L A F
Sbjct: 343 YHCRDMAILRARQLNIPIVLGTATPSF 369
Score = 56 (24.8 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 30/125 (24%), Positives = 52/125 (41%)
Query: 498 VLPRIKGLEEPMDFLQQAFPGVDIA-IAHGQQYSR-QLEETMEKFAQGAIKILICTNIVE 555
+ P +G E+ L++ FP I I + +L + +++ ++L+ T ++
Sbjct: 492 IAPLGQGTEQLESRLEELFPESSIVRIDRDSTRKKGELAKLLQEVTDKKHQLLVGTQMLA 551
Query: 556 SGLDIQNANTIIVQDVQ----QFG------LAQLY-QLRGRVGRADKEAHAYLF--YPDK 602
G + + V DV F +AQL Q+ GR GRA K + + D
Sbjct: 552 KGHHFPDVTLVAVLDVDGALFSFDFRASEQMAQLLIQVAGRAGRASKPGKVLVQSNFVDH 611
Query: 603 SLLSD 607
LL D
Sbjct: 612 PLLQD 616
Score = 42 (19.8 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 79 LNERIRRDFGKREATRPVMDSE-EADKYIQLVKE 111
+ ER+ FG R+ V+D++ + D I VK+
Sbjct: 33 VGERVAVSFGPRKVIGIVIDAQAQCDFEISKVKD 66
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 129 (50.5 bits), Expect = 0.00020, P = 0.00020
Identities = 89/345 (25%), Positives = 137/345 (39%)
Query: 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-----GKQAMV 336
PTP Q+K + V D D + G GKT L +F + A G +A++
Sbjct: 118 PTPIQRKT-IPVILD------GKDVVAMARTGSGKTACFLLPMFERLKARSAQTGARALI 170
Query: 337 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 396
L+PT LA Q E K+ +K L+ +K E H + +II+ T
Sbjct: 171 LSPTRELALQTMKFTKE-LGKFTGLKTALILG----GDKMEDQFAALHENPDIIIATPGR 225
Query: 397 LGSRVVYNNLGL-----LVVDEEQR-----FGVKQKEKIASFKISVDVLTLSATPIPRTL 446
L V NL L +V DE R F + +E I + SAT +P+ L
Sbjct: 226 LVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFSAT-LPKLL 284
Query: 447 Y-LALTGFRDASLISTPPPERL--PIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
A G + LI +L +KT ++ + + Y L +
Sbjct: 285 VEFARAGLTEPVLIRLDVDSKLNEQLKTSFFLVREDTKTAVLLYLLQNVVRPQDQNVVFV 344
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEET-----MEKFAQGAIKILICTNIVESGL 558
+ ++L + G ++ AH YS L++T + KF LI T++ GL
Sbjct: 345 ATKHHAEYLTELLTGQGVSCAH--IYSA-LDQTARKINLAKFTHNKCSTLIVTDLAARGL 401
Query: 559 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAY-LFYPDK 602
DI + +I G L+++ GRV RA + AY L PD+
Sbjct: 402 DIPLLDNVINYSFPAKGKLFLHRV-GRVARAGRSGTAYSLVAPDE 445
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 128 (50.1 bits), Expect = 0.00024, P = 0.00024
Identities = 72/285 (25%), Positives = 126/285 (44%)
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 388
+ G +A++++PT LA Q F VV E ++ ++ L + EE I H + +
Sbjct: 91 TTGIRALMVSPTRELALQTFKVVKE-LGRFTGLRCACLV---GGDQIEEQFSTI-HENPD 145
Query: 389 IIVGTHSLLGSRVVYNNLGL-----LVVDEEQRF---GVKQK--EKIASFKISVDVLTLS 438
I++ T L +V +L L +V DE R G + + E + S L S
Sbjct: 146 ILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQTLLFS 205
Query: 439 ATPIPRTLY-LALTGFRDASLISTPPPERLPIKTHL---SAFSKEKVISAIKY--ELDRG 492
AT +P+ L A G D L+ E++ K + EK+ + + +DR
Sbjct: 206 AT-LPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLFALLHLCRRMDRE 264
Query: 493 G-QVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICT 551
Q +K +E + L +A G+D + + Q + + ++KF + IL+ T
Sbjct: 265 NKQTVVFCATMKHVEYVVGILHRA--GIDCSFVYSQLDATARKMNIQKFHEKQNNILVVT 322
Query: 552 NIVESGLDIQNANTIIVQDVQQFGLAQLYQLR-GRVGRADKEAHA 595
++ G+DI +T+I ++ A+L+ R GRV RA + A
Sbjct: 323 DVAARGVDIPLLDTVI--NLHFPPKAKLFVHRVGRVARAGRSGTA 365
>SGD|S000002428 [details] [associations]
symbol:FAL1 "Nucleolar protein required for maturation of 18S
rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
Uniprot:Q12099
Length = 399
Score = 123 (48.4 bits), Expect = 0.00028, P = 0.00028
Identities = 74/328 (22%), Positives = 139/328 (42%)
Query: 295 RDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVV 351
R +T+ + D + G GKT + + K QA++L+PT LA Q VV
Sbjct: 52 RAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVV 111
Query: 352 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS----LLGSRVVYN-NL 406
+ Y ++ ++ K K++ M KHG + GT ++ +++ N+
Sbjct: 112 -KNLGDYMNVNAFAITG--GKTLKDDLKKMQKHG-CQAVSGTPGRVLDMIKKQMLQTRNV 167
Query: 407 GLLVVDE-----EQRFGVKQK--EKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLI 459
+LV+DE + G KQ+ + A + V+ +SAT L + D I
Sbjct: 168 QMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKI 227
Query: 460 STPPPE-RLP-IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK-----GLEEPMDFL 512
E L IK ++ KE+ ++ D ++ L + ++ +D+L
Sbjct: 228 LVKRDEISLEGIKQYVVNVDKEE------WKFDTLCDIYDSLTITQCVIFCNTKKKVDWL 281
Query: 513 QQAFPGVDIAIA--HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
Q + A+ HG + ++ M F G ++LI T++ G+D+Q + +I D
Sbjct: 282 SQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYD 341
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLF 598
+ + ++++ GR GR ++ A F
Sbjct: 342 LPEIIENYIHRI-GRSGRFGRKGVAINF 368
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 124 (48.7 bits), Expect = 0.00041, P = 0.00041
Identities = 73/313 (23%), Positives = 129/313 (41%)
Query: 313 GFGKTEV-ALRAIFCVVSAGK--QAMVLAPTIVLAKQHFDVVSERFSK-YPDIKVGLLSR 368
G GKT L A+ + ++ K Q MVLAPT LA Q + + E F K ++V L
Sbjct: 62 GTGKTAAFGLPALAKIDTSIKKPQLMVLAPTRELAMQVAEAI-ESFGKDMKGLRVATLYG 120
Query: 369 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL-----LVVDE-EQRFGVKQK 422
QS + + L+ G ++VGT L + +L L V+DE ++ +
Sbjct: 121 GQSYGPQFQQLE---RG-AQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFL 176
Query: 423 EKIA----SFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKT-----HL 473
E I + + SAT P +A +D I ++ +
Sbjct: 177 EDIQWILDHIPKTAQMCLFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKV 236
Query: 474 SAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQL 533
S +K + I ++ + +V R ++ + +P + + +G Q
Sbjct: 237 SGITKMTALERIAEVVEYDAMIIFVRTRNDTVDIAEKLERAGYPALAL---NGDLNQAQR 293
Query: 534 EETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEA 593
E +++ G IL+ T++V GLDI + +I D+ A ++++ GR GRA +E
Sbjct: 294 ERCIDQMKSGKSSILVATDVVARGLDIPRISLVINYDLPGDNEAYVHRI-GRTGRAGREG 352
Query: 594 HAYLFYPDKSLLS 606
+ F + + S
Sbjct: 353 MSIAFVRPREMYS 365
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 123 (48.4 bits), Expect = 0.00044, P = 0.00044
Identities = 72/282 (25%), Positives = 117/282 (41%)
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 388
S +A+VL PT LA Q + V E + KY ++ ++ F + ++ ++HG ++
Sbjct: 71 SGQTRALVLTPTRELAAQVGESV-ETYGKYLPLRSAVV--FGGVPINPQ-INKLRHG-VD 125
Query: 389 IIVGTHSLL-----GSRVVYNNLGLLVVDEEQRF---G-VKQKEKI-ASFKISVDVLTLS 438
++V T L + V +N L +LV+DE R G ++ +KI A L S
Sbjct: 126 VLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMFS 185
Query: 439 ATPIPRTLYLALTGFRDASLISTPPPERLP--IKTHLSAFSKEKVISAIKYEL--DRGGQ 494
AT LA IS P +K + K + SA+ +L Q
Sbjct: 186 ATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQK-SALLIQLIKQENWQ 244
Query: 495 VFYVLPRIK-GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI 553
V R K G L QA + A HG + + + F G +++L+ T+I
Sbjct: 245 QVLVFSRTKHGANRLAKSLIQA--EISAAAIHGNKSQGARTKALADFKSGEVRVLVATDI 302
Query: 554 VESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHA 595
GLDI ++ D+ ++++ GR GRA A
Sbjct: 303 AARGLDIDQLPQVVNFDLPNVPEDYVHRI-GRTGRAGATGQA 343
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 121 (47.7 bits), Expect = 0.00070, P = 0.00070
Identities = 73/306 (23%), Positives = 125/306 (40%)
Query: 313 GFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIK-VGLLSR 368
G GKT + V K Q +V+APT LA Q V E K K V +L
Sbjct: 49 GTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQ----VGEELYKIGKHKRVRILPI 104
Query: 369 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF 428
+ + + + KH H IIVGT + + N L + + + + +++ +
Sbjct: 105 YGGQDINRQIRALKKHPH--IIVGTPGRILDHI---NRKTLRLQNVETVVLDEADEMLNM 159
Query: 429 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK-Y 487
D+ + T +P T L I + H+ +KE + I+ +
Sbjct: 160 GFIEDIEAI-LTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF 218
Query: 488 ELD-RGGQVFYVLPRIKGLEEP------------MDFLQQAFP--GVDIAIAHGQQYSRQ 532
L+ + + F VL R+ ++ P +D L +A G HG +
Sbjct: 219 YLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAK 278
Query: 533 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE 592
+ KF +G+I++L+ T++ GLDI + D+ Q + ++++ GR GRA K+
Sbjct: 279 RMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKK 337
Query: 593 AHAYLF 598
A LF
Sbjct: 338 GIAMLF 343
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 121 (47.7 bits), Expect = 0.00070, P = 0.00070
Identities = 73/306 (23%), Positives = 125/306 (40%)
Query: 313 GFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIK-VGLLSR 368
G GKT + V K Q +V+APT LA Q V E K K V +L
Sbjct: 49 GTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQ----VGEELYKIGKHKRVRILPI 104
Query: 369 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF 428
+ + + + KH H IIVGT + + N L + + + + +++ +
Sbjct: 105 YGGQDINRQIRALKKHPH--IIVGTPGRILDHI---NRKTLRLQNVETVVLDEADEMLNM 159
Query: 429 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK-Y 487
D+ + T +P T L I + H+ +KE + I+ +
Sbjct: 160 GFIEDIEAI-LTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF 218
Query: 488 ELD-RGGQVFYVLPRIKGLEEP------------MDFLQQAFP--GVDIAIAHGQQYSRQ 532
L+ + + F VL R+ ++ P +D L +A G HG +
Sbjct: 219 YLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAK 278
Query: 533 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE 592
+ KF +G+I++L+ T++ GLDI + D+ Q + ++++ GR GRA K+
Sbjct: 279 RMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKK 337
Query: 593 AHAYLF 598
A LF
Sbjct: 338 GIAMLF 343
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 121 (47.7 bits), Expect = 0.00070, P = 0.00070
Identities = 73/306 (23%), Positives = 125/306 (40%)
Query: 313 GFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIK-VGLLSR 368
G GKT + V K Q +V+APT LA Q V E K K V +L
Sbjct: 49 GTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQ----VGEELYKIGKHKRVRILPI 104
Query: 369 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF 428
+ + + + KH H IIVGT + + N L + + + + +++ +
Sbjct: 105 YGGQDINRQIRALKKHPH--IIVGTPGRILDHI---NRKTLRLQNVETVVLDEADEMLNM 159
Query: 429 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK-Y 487
D+ + T +P T L I + H+ +KE + I+ +
Sbjct: 160 GFIEDIEAI-LTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF 218
Query: 488 ELD-RGGQVFYVLPRIKGLEEP------------MDFLQQAFP--GVDIAIAHGQQYSRQ 532
L+ + + F VL R+ ++ P +D L +A G HG +
Sbjct: 219 YLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAK 278
Query: 533 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE 592
+ KF +G+I++L+ T++ GLDI + D+ Q + ++++ GR GRA K+
Sbjct: 279 RMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKK 337
Query: 593 AHAYLF 598
A LF
Sbjct: 338 GIAMLF 343
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 121 (47.7 bits), Expect = 0.00070, P = 0.00070
Identities = 73/306 (23%), Positives = 125/306 (40%)
Query: 313 GFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIK-VGLLSR 368
G GKT + V K Q +V+APT LA Q V E K K V +L
Sbjct: 49 GTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQ----VGEELYKIGKHKRVRILPI 104
Query: 369 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF 428
+ + + + KH H IIVGT + + N L + + + + +++ +
Sbjct: 105 YGGQDINRQIRALKKHPH--IIVGTPGRILDHI---NRKTLRLQNVETVVLDEADEMLNM 159
Query: 429 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK-Y 487
D+ + T +P T L I + H+ +KE + I+ +
Sbjct: 160 GFIEDIEAI-LTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF 218
Query: 488 ELD-RGGQVFYVLPRIKGLEEP------------MDFLQQAFP--GVDIAIAHGQQYSRQ 532
L+ + + F VL R+ ++ P +D L +A G HG +
Sbjct: 219 YLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAK 278
Query: 533 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE 592
+ KF +G+I++L+ T++ GLDI + D+ Q + ++++ GR GRA K+
Sbjct: 279 RMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKK 337
Query: 593 AHAYLF 598
A LF
Sbjct: 338 GIAMLF 343
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 121 (47.7 bits), Expect = 0.00070, P = 0.00070
Identities = 73/306 (23%), Positives = 125/306 (40%)
Query: 313 GFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIK-VGLLSR 368
G GKT + V K Q +V+APT LA Q V E K K V +L
Sbjct: 49 GTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQ----VGEELYKIGKHKRVRILPI 104
Query: 369 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF 428
+ + + + KH H IIVGT + + N L + + + + +++ +
Sbjct: 105 YGGQDINRQIRALKKHPH--IIVGTPGRILDHI---NRKTLRLQNVETVVLDEADEMLNM 159
Query: 429 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK-Y 487
D+ + T +P T L I + H+ +KE + I+ +
Sbjct: 160 GFIEDIEAI-LTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF 218
Query: 488 ELD-RGGQVFYVLPRIKGLEEP------------MDFLQQAFP--GVDIAIAHGQQYSRQ 532
L+ + + F VL R+ ++ P +D L +A G HG +
Sbjct: 219 YLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAK 278
Query: 533 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE 592
+ KF +G+I++L+ T++ GLDI + D+ Q + ++++ GR GRA K+
Sbjct: 279 RMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKK 337
Query: 593 AHAYLF 598
A LF
Sbjct: 338 GIAMLF 343
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 121 (47.7 bits), Expect = 0.00070, P = 0.00070
Identities = 73/306 (23%), Positives = 125/306 (40%)
Query: 313 GFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIK-VGLLSR 368
G GKT + V K Q +V+APT LA Q V E K K V +L
Sbjct: 49 GTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQ----VGEELYKIGKHKRVRILPI 104
Query: 369 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF 428
+ + + + KH H IIVGT + + N L + + + + +++ +
Sbjct: 105 YGGQDINRQIRALKKHPH--IIVGTPGRILDHI---NRKTLRLQNVETVVLDEADEMLNM 159
Query: 429 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK-Y 487
D+ + T +P T L I + H+ +KE + I+ +
Sbjct: 160 GFIEDIEAI-LTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF 218
Query: 488 ELD-RGGQVFYVLPRIKGLEEP------------MDFLQQAFP--GVDIAIAHGQQYSRQ 532
L+ + + F VL R+ ++ P +D L +A G HG +
Sbjct: 219 YLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAK 278
Query: 533 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE 592
+ KF +G+I++L+ T++ GLDI + D+ Q + ++++ GR GRA K+
Sbjct: 279 RMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKK 337
Query: 593 AHAYLF 598
A LF
Sbjct: 338 GIAMLF 343
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 121 (47.7 bits), Expect = 0.00071, P = 0.00071
Identities = 73/306 (23%), Positives = 125/306 (40%)
Query: 313 GFGKTEVALRAIFCVVSAGK---QAMVLAPTIVLAKQHFDVVSERFSKYPDIK-VGLLSR 368
G GKT + V K Q +V+APT LA Q V E K K V +L
Sbjct: 49 GTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQ----VGEELYKIGKHKRVRILPI 104
Query: 369 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF 428
+ + + + KH H IIVGT + + N L + + + + +++ +
Sbjct: 105 YGGQDINRQIRALKKHPH--IIVGTPGRILDHI---NRKTLRLQNVETVVLDEADEMLNM 159
Query: 429 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIK-Y 487
D+ + T +P T L I + H+ +KE + I+ +
Sbjct: 160 GFIEDIEAI-LTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF 218
Query: 488 ELD-RGGQVFYVLPRIKGLEEP------------MDFLQQAFP--GVDIAIAHGQQYSRQ 532
L+ + + F VL R+ ++ P +D L +A G HG +
Sbjct: 219 YLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAK 278
Query: 533 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE 592
+ KF +G+I++L+ T++ GLDI + D+ Q + ++++ GR GRA K+
Sbjct: 279 RMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI-GRTGRAGKK 337
Query: 593 AHAYLF 598
A LF
Sbjct: 338 GIAMLF 343
>UNIPROTKB|A4RHU9 [details] [associations]
symbol:DCL2 "Dicer-like protein 2" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS00690 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00490 SMART:SM00535 GO:GO:0005524
GO:GO:0046872 GO:GO:0051607 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 OrthoDB:EOG4JWZNK
RefSeq:XP_003715365.1 GeneID:2683150 KEGG:mgr:MGG_12357
Uniprot:A4RHU9
Length = 1485
Score = 104 (41.7 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 537 MEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAY 596
+EKF GAI +L+ T+++E G+D+ N +I D+ L Q RGR + + H
Sbjct: 490 LEKFRSGAINLLVATSVLEEGIDVPVCNLVICFDMPA-NLKSFIQRRGRARMRESKLH-- 546
Query: 597 LFYPDKSLLS 606
L + SL+S
Sbjct: 547 LMIEEDSLVS 556
Score = 74 (31.1 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 29/115 (25%), Positives = 54/115 (46%)
Query: 307 LICGDVGFGKTEVA---LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKV 363
++ D G GKT+VA +RA K+ LAPT+ L Q ++V+ + I +
Sbjct: 82 IVSMDTGSGKTQVAVLRIRAELERTPPEKRVWFLAPTVALCAQQYEVIRSQIKVANSIVM 141
Query: 364 GLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDE 413
S ++ + D + ++ ++V T+ +L V +++ LLV+DE
Sbjct: 142 TGDDNVDSWSDVQTW-DAVL-ANVRVVVCTYMILFEALSHAFVTMDSISLLVMDE 194
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 91 (37.1 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 26/78 (33%), Positives = 36/78 (46%)
Query: 515 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 574
+FP V + H RQ + KF KILI T++ GLDI +I +
Sbjct: 272 SFPSVAL---HSMMKQRQRFAALAKFKSSIFKILIATDVAARGLDIPTVQVVINHNTP-- 326
Query: 575 GLAQLYQLR-GRVGRADK 591
GL ++Y R GR RA +
Sbjct: 327 GLPKIYIHRVGRTARAGR 344
Score = 74 (31.1 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 53/193 (27%), Positives = 74/193 (38%)
Query: 269 PAIAEFAAQFPYE-PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
P + E A Q PTP Q + L R D L C G GKT + + V
Sbjct: 11 PWLVEQARQMGLSRPTPVQASCIPPI---LQGR----DCLGCAKTGSGKTAAFVLPVLQV 63
Query: 328 VSA---GKQAMVLAPTIVLAKQ---HFDVVSERFSKYPDIKVGLLSRFQSKAE--KEEHL 379
+S G +VL PT LA Q F V+ + + VG L E ++ H+
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPHV 123
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ G L H + L LV+DE R ++ A F ++V+ L A
Sbjct: 124 VIATPGRL----ADHLRSSNTFSLKKLKFLVLDEADRL---LEQGCADFTADLEVI-LEA 175
Query: 440 TPIPR-TLYLALT 451
P R TL + T
Sbjct: 176 VPARRQTLLFSAT 188
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 118 (46.6 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 32/124 (25%), Positives = 61/124 (49%)
Query: 482 ISAIKYELDRGGQVF-YVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKF 540
IS IK + G ++ +V +IK +E+ + ++ G + HG + + + ++ F
Sbjct: 481 ISPIKNSGNNGNKIIVFVETKIK-VEDILQIIRAE--GYNATSIHGDKTQNERDSVLKDF 537
Query: 541 AQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY- 599
G ILI T++ GLD+++ +I D ++++ GR GR + AY F+
Sbjct: 538 RNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRI-GRTGRCQQLGTAYTFFT 596
Query: 600 PDKS 603
PD +
Sbjct: 597 PDNA 600
Score = 55 (24.4 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 30/93 (32%), Positives = 42/93 (45%)
Query: 331 GKQAMVLAPTIVLAKQHFDVVSE--RFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 388
G A+VLAPT LA+Q VV + K P+I+ + SK + LD G +
Sbjct: 310 GPIALVLAPTRELAQQIQSVVRDYGHLCK-PEIRHTCIFGGSSKVPQARDLD---RG-VE 364
Query: 389 IIVGTHSLLGSRVVYNNLGL-----LVVDEEQR 416
+I+ T L + N L LV+DE R
Sbjct: 365 VIIATPGRLIDFLENRNTNLQRCTYLVLDEADR 397
>POMBASE|SPAC1093.05 [details] [associations]
symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
NextBio:20802723 Uniprot:Q9UTP9
Length = 735
Score = 122 (48.0 bits), Expect = 0.00086, P = 0.00086
Identities = 61/283 (21%), Positives = 116/283 (40%)
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
G A+V++PT LA Q F+ + + + GL+ + E++E L + ++ +
Sbjct: 111 GLGALVISPTRELAIQTFETLV-KIGRLHSFSAGLIIGGNNYKEEKERLSRM---NILVC 166
Query: 391 VGTHSL--LGSRVVYNNLGL--LVVDEEQR-----FGVKQKEKIASFKISVDVLTLSATP 441
L + V ++ GL L++DE R F ++S + + SAT
Sbjct: 167 TPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQ 226
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISA---IKYELDRGGQVFYV 498
LA ++ IS + ++L+ F ++ I + R F
Sbjct: 227 TKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFIRTHLKFKT 286
Query: 499 LPRIKGLEEPMDFLQQAF----PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIV 554
+ + ++ + F+ + F PG+ + HG+Q E KF +L CT+IV
Sbjct: 287 IVFLSSCKQ-VRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIV 345
Query: 555 ESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYL 597
GLD + +I D + ++++ GR R ++ +A L
Sbjct: 346 ARGLDFPAVDWVIQLDAPEDVDTYIHRV-GRTARYNRSGNALL 387
>UNIPROTKB|P21693 [details] [associations]
symbol:dbpA species:83333 "Escherichia coli K-12"
[GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
[GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
"ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
Length = 457
Score = 119 (46.9 bits), Expect = 0.00094, P = 0.00094
Identities = 78/308 (25%), Positives = 124/308 (40%)
Query: 313 GFGKTEVALRAIFCVVSAG---KQAMVLAPTIVLAKQHFDVVSE--RFSKY-PDIKVGLL 366
G GKT + + A QA+VL PT LA Q V E R +++ P+ K+ L
Sbjct: 50 GSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ---VAGELRRLARFLPNTKILTL 106
Query: 367 SRFQSKAEKEEHLDMIKHGHLNIIVGT------HSLLGSRVVYNNLGLLVVDEEQRF--- 417
Q + + L H IIV T H G+ V + L LV+DE R
Sbjct: 107 CGGQPFGMQRDSLQHAPH----IIVATPGRLLDHLQKGT-VSLDALNTLVMDEADRMLDM 161
Query: 418 GVKQK-EKIASFK-ISVDVLTLSATPIPRTLYLALTGF--RDASLISTPPPERLP-IKTH 472
G + + F S L SAT P + A++G RD I + LP I+
Sbjct: 162 GFSDAIDDVIRFAPASRQTLLFSAT-WPEAI-AAISGRVQRDPLAIEIDSTDALPPIEQQ 219
Query: 473 LSAFSKEKVISAIK--YELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYS 530
S + I ++ L + K + D L + G HG
Sbjct: 220 FYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEV--GQSALSLHGDLEQ 277
Query: 531 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 590
R ++T+ +FA G+ ++L+ T++ GLDI++ ++ ++ ++++ GR RA
Sbjct: 278 RDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRI-GRTARAG 336
Query: 591 KEAHAYLF 598
A F
Sbjct: 337 NSGLAISF 344
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 835 747 0.00089 121 3 11 22 0.39 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 119
No. of states in DFA: 621 (66 KB)
Total size of DFA: 345 KB (2174 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 63.33u 0.20s 63.53t Elapsed: 00:00:03
Total cpu time: 63.35u 0.20s 63.55t Elapsed: 00:00:03
Start: Sat May 11 12:27:36 2013 End: Sat May 11 12:27:39 2013
WARNINGS ISSUED: 1