BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003260
(835 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297832728|ref|XP_002884246.1| hypothetical protein ARALYDRAFT_477305 [Arabidopsis lyrata subsp.
lyrata]
gi|297330086|gb|EFH60505.1| hypothetical protein ARALYDRAFT_477305 [Arabidopsis lyrata subsp.
lyrata]
Length = 823
Score = 1372 bits (3550), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 660/786 (83%), Positives = 725/786 (92%), Gaps = 11/786 (1%)
Query: 51 GLSLSSPTSKKPTQRREKNE-NETDDISILNERIRRDFGKREATRPVMDSEEADKYIQLV 109
+S S T+ KPT+ REK E E+D IS+LNERIRRD GKRE RP MDSEE +KYIQ+V
Sbjct: 48 AVSSLSATAAKPTRWREKPELAESDSISLLNERIRRDIGKRETARPAMDSEETEKYIQMV 107
Query: 110 KEQQQKGLQKLKGKKSGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGK 169
KEQQ++GLQKLKG + G AG G GFSYKVDPYSL SGDYVVHKKVGIG+
Sbjct: 108 KEQQERGLQKLKGIRQGTEAAGTG----------GFSYKVDPYSLLSGDYVVHKKVGIGR 157
Query: 170 FVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDT 229
FVGIKFDV KDS+ P+EYVFIEYADGMAKLP+KQASR+LYRYNLPNETKRPRTLS+LSDT
Sbjct: 158 FVGIKFDVPKDSSEPLEYVFIEYADGMAKLPLKQASRLLYRYNLPNETKRPRTLSRLSDT 217
Query: 230 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKA 289
+ WERRKTKGKVAIQKMVVDLMELYLHRL+QKR PYPKNP +A+FAAQFPY TPDQK+A
Sbjct: 218 SVWERRKTKGKVAIQKMVVDLMELYLHRLRQKRYPYPKNPIMADFAAQFPYNATPDQKQA 277
Query: 290 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349
FLDVE+DLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH+D
Sbjct: 278 FLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHYD 337
Query: 350 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409
V+SERFS YP IKVGLLSRFQ+KAEKEE+L+MIK GHLNIIVGTHSLLGSRVVY+NLGLL
Sbjct: 338 VISERFSLYPQIKVGLLSRFQTKAEKEEYLEMIKDGHLNIIVGTHSLLGSRVVYSNLGLL 397
Query: 410 VVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI 469
VVDEEQRFGVKQKEKIASFK SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER+PI
Sbjct: 398 VVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERIPI 457
Query: 470 KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 529
KTHLS+F KEKVI AIK ELDRGGQVFYVLPRIKGLEE MDFL++AFP +DIA+AHG+QY
Sbjct: 458 KTHLSSFRKEKVIEAIKNELDRGGQVFYVLPRIKGLEEVMDFLEEAFPDIDIAMAHGKQY 517
Query: 530 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 589
S+QLEETME+FAQG IKILICTNIVESGLDIQNANTII+QDVQQFGLAQLYQLRGRVGRA
Sbjct: 518 SKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRA 577
Query: 590 DKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 649
DKEAHAYLFYPDKSLLSDQALERL+ALEECRELGQGFQLAE+DMGIRGFGTIFGEQQTGD
Sbjct: 578 DKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGD 637
Query: 650 VGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNE 709
VGNVG+DLFFEMLFESLSKV+E + SVPY V+IDININPRLPSEY+N+LENPME++NE
Sbjct: 638 VGNVGIDLFFEMLFESLSKVEELRIFSVPYDLVKIDININPRLPSEYVNYLENPMEIINE 697
Query: 710 AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGM 769
AEKAAE+D+W LMQFTE+LRRQYGKEPYSMEI+LKKLYVRRMAAD+G+ +IYASGKMV M
Sbjct: 698 AEKAAEKDMWSLMQFTENLRRQYGKEPYSMEIILKKLYVRRMAADLGVNRIYASGKMVVM 757
Query: 770 KTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASL 829
KTNM+KKVFK++ DSMT +V+R+SL +EGDQI AELLLELPREQLLNW+FQCL+EL+ASL
Sbjct: 758 KTNMSKKVFKLITDSMTCDVYRSSLIYEGDQIMAELLLELPREQLLNWMFQCLSELHASL 817
Query: 830 PALIKY 835
PALIKY
Sbjct: 818 PALIKY 823
>gi|18396054|ref|NP_566160.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana]
gi|332640233|gb|AEE73754.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana]
Length = 823
Score = 1366 bits (3536), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 659/786 (83%), Positives = 724/786 (92%), Gaps = 11/786 (1%)
Query: 51 GLSLSSPTSKKPTQRREKNE-NETDDISILNERIRRDFGKREATRPVMDSEEADKYIQLV 109
+S S T+ KPT+ REK E E+D IS+LNERIRRD GKRE RP MDSEEA+KYI +V
Sbjct: 48 AVSSLSATAAKPTRWREKPELAESDSISLLNERIRRDLGKRETARPAMDSEEAEKYIHMV 107
Query: 110 KEQQQKGLQKLKGKKSGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGK 169
KEQQ++GLQKLKG + G AG GA FSYKVDPYSL SGDYVVHKKVGIG+
Sbjct: 108 KEQQERGLQKLKGIRQGTKAAGDGA----------FSYKVDPYSLLSGDYVVHKKVGIGR 157
Query: 170 FVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDT 229
FVGIKFDV KDS+ P+EYVFIEYADGMAKLP+KQASR+LYRYNLPNETKRPRTLS+LSDT
Sbjct: 158 FVGIKFDVPKDSSEPLEYVFIEYADGMAKLPLKQASRLLYRYNLPNETKRPRTLSRLSDT 217
Query: 230 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKA 289
+ WERRKTKGKVAIQKMVVDLMELYLHRL+QKR PYPKNP +A+FAAQFPY TPDQK+A
Sbjct: 218 SVWERRKTKGKVAIQKMVVDLMELYLHRLRQKRYPYPKNPIMADFAAQFPYNATPDQKQA 277
Query: 290 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349
FLDVE+DLTERETPMDRLICGDVGFGKTEVALRAIFCVVS GKQAMVLAPTIVLAKQH+D
Sbjct: 278 FLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSTGKQAMVLAPTIVLAKQHYD 337
Query: 350 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409
V+SERFS YP IKVGLLSRFQ+KAEKEE+L+MIK GHLNIIVGTHSLLGSRVVY+NLGLL
Sbjct: 338 VISERFSLYPHIKVGLLSRFQTKAEKEEYLEMIKTGHLNIIVGTHSLLGSRVVYSNLGLL 397
Query: 410 VVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI 469
VVDEEQRFGVKQKEKIASFK SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER+PI
Sbjct: 398 VVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERIPI 457
Query: 470 KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 529
KTHLS+F KEKVI AIK ELDRGGQVFYVLPRIKGLEE MDFL++AFP +DIA+AHG+QY
Sbjct: 458 KTHLSSFRKEKVIEAIKNELDRGGQVFYVLPRIKGLEEVMDFLEEAFPDIDIAMAHGKQY 517
Query: 530 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 589
S+QLEETME+FAQG IKILICTNIVESGLDIQNANTII+QDVQQFGLAQLYQLRGRVGRA
Sbjct: 518 SKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRA 577
Query: 590 DKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 649
DKEAHAYLFYPDKSLLSDQALERL+ALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD
Sbjct: 578 DKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 637
Query: 650 VGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNE 709
VGNVG+DLFFEMLFESLSKV+E + SVPY V+IDININPRLPSEY+N+LENPME+++E
Sbjct: 638 VGNVGIDLFFEMLFESLSKVEELRIFSVPYDLVKIDININPRLPSEYVNYLENPMEIIHE 697
Query: 710 AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGM 769
AEKAAE+D+W LMQFTE+LRRQYGKEPYSMEI+LKKLYVRRMAAD+G+ +IYASGKMV M
Sbjct: 698 AEKAAEKDMWSLMQFTENLRRQYGKEPYSMEIILKKLYVRRMAADLGVNRIYASGKMVVM 757
Query: 770 KTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASL 829
KTNM+KKVFK++ DSMT +V+R+SL +EGDQI AELLLELPREQLLNW+FQCL+EL+ASL
Sbjct: 758 KTNMSKKVFKLITDSMTCDVYRSSLIYEGDQIMAELLLELPREQLLNWMFQCLSELHASL 817
Query: 830 PALIKY 835
PALIKY
Sbjct: 818 PALIKY 823
>gi|145331730|ref|NP_001078092.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana]
gi|6513947|gb|AAF14851.1|AC011664_33 putative helicase [Arabidopsis thaliana]
gi|332640234|gb|AEE73755.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana]
Length = 822
Score = 1366 bits (3536), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 659/786 (83%), Positives = 724/786 (92%), Gaps = 11/786 (1%)
Query: 51 GLSLSSPTSKKPTQRREKNE-NETDDISILNERIRRDFGKREATRPVMDSEEADKYIQLV 109
+S S T+ KPT+ REK E E+D IS+LNERIRRD GKRE RP MDSEEA+KYI +V
Sbjct: 47 AVSSLSATAAKPTRWREKPELAESDSISLLNERIRRDLGKRETARPAMDSEEAEKYIHMV 106
Query: 110 KEQQQKGLQKLKGKKSGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGK 169
KEQQ++GLQKLKG + G AG GA FSYKVDPYSL SGDYVVHKKVGIG+
Sbjct: 107 KEQQERGLQKLKGIRQGTKAAGDGA----------FSYKVDPYSLLSGDYVVHKKVGIGR 156
Query: 170 FVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDT 229
FVGIKFDV KDS+ P+EYVFIEYADGMAKLP+KQASR+LYRYNLPNETKRPRTLS+LSDT
Sbjct: 157 FVGIKFDVPKDSSEPLEYVFIEYADGMAKLPLKQASRLLYRYNLPNETKRPRTLSRLSDT 216
Query: 230 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKA 289
+ WERRKTKGKVAIQKMVVDLMELYLHRL+QKR PYPKNP +A+FAAQFPY TPDQK+A
Sbjct: 217 SVWERRKTKGKVAIQKMVVDLMELYLHRLRQKRYPYPKNPIMADFAAQFPYNATPDQKQA 276
Query: 290 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349
FLDVE+DLTERETPMDRLICGDVGFGKTEVALRAIFCVVS GKQAMVLAPTIVLAKQH+D
Sbjct: 277 FLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSTGKQAMVLAPTIVLAKQHYD 336
Query: 350 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409
V+SERFS YP IKVGLLSRFQ+KAEKEE+L+MIK GHLNIIVGTHSLLGSRVVY+NLGLL
Sbjct: 337 VISERFSLYPHIKVGLLSRFQTKAEKEEYLEMIKTGHLNIIVGTHSLLGSRVVYSNLGLL 396
Query: 410 VVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI 469
VVDEEQRFGVKQKEKIASFK SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER+PI
Sbjct: 397 VVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERIPI 456
Query: 470 KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 529
KTHLS+F KEKVI AIK ELDRGGQVFYVLPRIKGLEE MDFL++AFP +DIA+AHG+QY
Sbjct: 457 KTHLSSFRKEKVIEAIKNELDRGGQVFYVLPRIKGLEEVMDFLEEAFPDIDIAMAHGKQY 516
Query: 530 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 589
S+QLEETME+FAQG IKILICTNIVESGLDIQNANTII+QDVQQFGLAQLYQLRGRVGRA
Sbjct: 517 SKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRA 576
Query: 590 DKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 649
DKEAHAYLFYPDKSLLSDQALERL+ALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD
Sbjct: 577 DKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 636
Query: 650 VGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNE 709
VGNVG+DLFFEMLFESLSKV+E + SVPY V+IDININPRLPSEY+N+LENPME+++E
Sbjct: 637 VGNVGIDLFFEMLFESLSKVEELRIFSVPYDLVKIDININPRLPSEYVNYLENPMEIIHE 696
Query: 710 AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGM 769
AEKAAE+D+W LMQFTE+LRRQYGKEPYSMEI+LKKLYVRRMAAD+G+ +IYASGKMV M
Sbjct: 697 AEKAAEKDMWSLMQFTENLRRQYGKEPYSMEIILKKLYVRRMAADLGVNRIYASGKMVVM 756
Query: 770 KTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASL 829
KTNM+KKVFK++ DSMT +V+R+SL +EGDQI AELLLELPREQLLNW+FQCL+EL+ASL
Sbjct: 757 KTNMSKKVFKLITDSMTCDVYRSSLIYEGDQIMAELLLELPREQLLNWMFQCLSELHASL 816
Query: 830 PALIKY 835
PALIKY
Sbjct: 817 PALIKY 822
>gi|312282627|dbj|BAJ34179.1| unnamed protein product [Thellungiella halophila]
Length = 823
Score = 1365 bits (3533), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 670/841 (79%), Positives = 742/841 (88%), Gaps = 24/841 (2%)
Query: 1 MASFSPN-----TPHLKLTSTSAAPPRLWGWTSLFTAHKQAKKKQSFQFKAVYTPGLSLS 55
M S PN T L S PPR LFT + + + S V LS
Sbjct: 1 MTSLLPNPDLVSTTPLVFKLYSFPPPR-----RLFTLRRSSFARNSSSLPLVAVSSLS-- 53
Query: 56 SPTSKKPTQRREKNE-NETDDISILNERIRRDFGKREATRPVMDSEEADKYIQLVKEQQQ 114
T+ KPT+ REK E E D IS+LNERIRRD GKRE +RP MDSEEADKYIQ+VKEQQ+
Sbjct: 54 -ATAAKPTRWREKQEFAENDSISLLNERIRRDLGKRETSRPAMDSEEADKYIQMVKEQQE 112
Query: 115 KGLQKLKGKKSGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIK 174
+GLQKLKG + G G+G GGFSYKVDPYSL SGDYVVHKKVGIG+FVGIK
Sbjct: 113 RGLQKLKGVRQG---TETGSG-------GGFSYKVDPYSLLSGDYVVHKKVGIGRFVGIK 162
Query: 175 FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWER 234
FDV KDS+ P+EYVFIEYADGMAKLP+KQASR+LYRYNLPNETKRPRTLS+LSDT+ WER
Sbjct: 163 FDVPKDSSEPLEYVFIEYADGMAKLPLKQASRLLYRYNLPNETKRPRTLSRLSDTSVWER 222
Query: 235 RKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVE 294
RKTKGKVAIQKMVVDLMELYLHRL+QKR PYPKNP +A+FAAQFPY TPDQK+AFLDV+
Sbjct: 223 RKTKGKVAIQKMVVDLMELYLHRLRQKRYPYPKNPIMADFAAQFPYNATPDQKQAFLDVD 282
Query: 295 RDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSER 354
+DLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH+DV+SER
Sbjct: 283 KDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHYDVISER 342
Query: 355 FSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEE 414
FS YP IKVGLLSRFQ+KAEKEE+L+MIK+G LNIIVGTHSLLGSRVVY+NLGLLVVDEE
Sbjct: 343 FSLYPQIKVGLLSRFQTKAEKEEYLEMIKNGDLNIIVGTHSLLGSRVVYSNLGLLVVDEE 402
Query: 415 QRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLS 474
QRFGVKQKEKIASFK SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER+PIKTHLS
Sbjct: 403 QRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERIPIKTHLS 462
Query: 475 AFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLE 534
+F KEKVI AIK ELDRGGQVFYVLPRIKGLEE M+FL++AFP +DIA+AHG++YS+QLE
Sbjct: 463 SFRKEKVIEAIKNELDRGGQVFYVLPRIKGLEEVMNFLEEAFPDIDIAMAHGKRYSKQLE 522
Query: 535 ETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAH 594
ETME+FAQG IKILICTNIVESGLDIQNANTII+QDVQQFGLAQLYQLRGRVGRADKEAH
Sbjct: 523 ETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAH 582
Query: 595 AYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVG 654
AYLFYPDKSLLSDQALERL+ALEECRELGQGFQLAE+DMGIRGFGTIFGEQQTGDVGNVG
Sbjct: 583 AYLFYPDKSLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVG 642
Query: 655 VDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAA 714
+DLFFEMLFESLSKV+E + SVPY V+IDI+INPRLPSEY+N+LENPME++NEAEKAA
Sbjct: 643 IDLFFEMLFESLSKVEELRIFSVPYNLVKIDIDINPRLPSEYVNYLENPMEIINEAEKAA 702
Query: 715 EQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMN 774
E+D+W LMQFTE+LRRQYGKEPYSMEI+LKKLYVRRMAAD+G+ +IYASGK+V MKTNM+
Sbjct: 703 EKDMWSLMQFTENLRRQYGKEPYSMEIILKKLYVRRMAADLGVNRIYASGKIVVMKTNMS 762
Query: 775 KKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIK 834
KKVF ++ DSMT +V+R+SL EGDQI AELLLELPREQLLNW+FQCL+EL+ASLPALIK
Sbjct: 763 KKVFNLIKDSMTCDVYRSSLIHEGDQIMAELLLELPREQLLNWMFQCLSELHASLPALIK 822
Query: 835 Y 835
Y
Sbjct: 823 Y 823
>gi|25084218|gb|AAN72199.1| putative helicase [Arabidopsis thaliana]
Length = 822
Score = 1363 bits (3529), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 658/786 (83%), Positives = 723/786 (91%), Gaps = 11/786 (1%)
Query: 51 GLSLSSPTSKKPTQRREKNE-NETDDISILNERIRRDFGKREATRPVMDSEEADKYIQLV 109
+S S T+ KPT+ REK E E+D IS+LNERIRRD GKRE RP MDSEEA+KYI +V
Sbjct: 47 AVSSLSATAAKPTRWREKPELAESDSISLLNERIRRDLGKRETARPAMDSEEAEKYIHMV 106
Query: 110 KEQQQKGLQKLKGKKSGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGK 169
KEQQ++GLQKLKG + G AG GA FSYKVDPYSL SGDYVVHKKVGIG+
Sbjct: 107 KEQQERGLQKLKGIRQGTKAAGDGA----------FSYKVDPYSLLSGDYVVHKKVGIGR 156
Query: 170 FVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDT 229
FVGIKFDV KDS+ P+EYVFIEYADGMAKLP+KQASR+LYRYNLPNETKRPRTLS+LSDT
Sbjct: 157 FVGIKFDVPKDSSEPLEYVFIEYADGMAKLPLKQASRLLYRYNLPNETKRPRTLSRLSDT 216
Query: 230 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKA 289
+ WERRKTKGKVAIQKMVVDLM LYLHRL+QKR PYPKNP +A+FAAQFPY TPDQK+A
Sbjct: 217 SVWERRKTKGKVAIQKMVVDLMGLYLHRLRQKRYPYPKNPIMADFAAQFPYNATPDQKQA 276
Query: 290 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349
FLDVE+DLTERETPMDRLICGDVGFGKTEVALRAIFCVVS GKQAMVLAPTIVLAKQH+D
Sbjct: 277 FLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSTGKQAMVLAPTIVLAKQHYD 336
Query: 350 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409
V+SERFS YP IKVGLLSRFQ+KAEKEE+L+MIK GHLNIIVGTHSLLGSRVVY+NLGLL
Sbjct: 337 VISERFSLYPHIKVGLLSRFQTKAEKEEYLEMIKTGHLNIIVGTHSLLGSRVVYSNLGLL 396
Query: 410 VVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI 469
VVDEEQRFGVKQKEKIASFK SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER+PI
Sbjct: 397 VVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERIPI 456
Query: 470 KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 529
KTHLS+F KEKVI AIK ELDRGGQVFYVLPRIKGLEE MDFL++AFP +DIA+AHG+QY
Sbjct: 457 KTHLSSFRKEKVIEAIKNELDRGGQVFYVLPRIKGLEEVMDFLEEAFPDIDIAMAHGKQY 516
Query: 530 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 589
S+QLEETME+FAQG IKILICTNIVESGLDIQNANTII+QDVQQFGLAQLYQLRGRVGRA
Sbjct: 517 SKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRA 576
Query: 590 DKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 649
DKEAHAYLFYPDKSLLSDQALERL+ALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD
Sbjct: 577 DKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 636
Query: 650 VGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNE 709
VGNVG+DLFFEMLFESLSKV+E + SVPY V+IDININPRLPSEY+N+LENPME+++E
Sbjct: 637 VGNVGIDLFFEMLFESLSKVEELRIFSVPYDLVKIDININPRLPSEYVNYLENPMEIIHE 696
Query: 710 AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGM 769
AEKAAE+D+W LMQFTE+LRRQYGKEPYSMEI+LKKLYVRRMAAD+G+ +IYASGKMV M
Sbjct: 697 AEKAAEKDMWSLMQFTENLRRQYGKEPYSMEIILKKLYVRRMAADLGVNRIYASGKMVVM 756
Query: 770 KTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASL 829
KTNM+KKVFK++ DSMT +V+R+SL +EGDQI AELLLELPREQLLNW+FQCL+EL+ASL
Sbjct: 757 KTNMSKKVFKLITDSMTCDVYRSSLIYEGDQIMAELLLELPREQLLNWMFQCLSELHASL 816
Query: 830 PALIKY 835
PALIKY
Sbjct: 817 PALIKY 822
>gi|13877639|gb|AAK43897.1|AF370520_1 putative helicase [Arabidopsis thaliana]
Length = 823
Score = 1363 bits (3529), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 658/786 (83%), Positives = 723/786 (91%), Gaps = 11/786 (1%)
Query: 51 GLSLSSPTSKKPTQRREKNE-NETDDISILNERIRRDFGKREATRPVMDSEEADKYIQLV 109
+S S T+ KPT+ REK E E+D IS+LNERIRRD GKRE RP MDSEEA+KYI +V
Sbjct: 48 AVSSLSATAAKPTRWREKPELAESDSISLLNERIRRDLGKRETARPAMDSEEAEKYIHMV 107
Query: 110 KEQQQKGLQKLKGKKSGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGK 169
KEQQ++GLQKLKG + G AG GA FSYKVDPYSL SGDYVVHKKVGIG+
Sbjct: 108 KEQQERGLQKLKGIRQGTKAAGDGA----------FSYKVDPYSLLSGDYVVHKKVGIGR 157
Query: 170 FVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDT 229
FVGIKFDV KDS+ P+EYVFIEYADGMAKLP+KQASR+LYRYNLPNETKRPRTLS+LSDT
Sbjct: 158 FVGIKFDVPKDSSEPLEYVFIEYADGMAKLPLKQASRLLYRYNLPNETKRPRTLSRLSDT 217
Query: 230 TAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKA 289
+ WERRKTKGKVAIQKMVVDLM LYLHRL+QKR PYPKNP +A+FAAQFPY TPDQK+A
Sbjct: 218 SVWERRKTKGKVAIQKMVVDLMGLYLHRLRQKRYPYPKNPIMADFAAQFPYNATPDQKQA 277
Query: 290 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349
FLDVE+DLTERETPMDRLICGDVGFGKTEVALRAIFCVVS GKQAMVLAPTIVLAKQH+D
Sbjct: 278 FLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSTGKQAMVLAPTIVLAKQHYD 337
Query: 350 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409
V+SERFS YP IKVGLLSRFQ+KAEKEE+L+MIK GHLNIIVGTHSLLGSRVVY+NLGLL
Sbjct: 338 VISERFSLYPHIKVGLLSRFQTKAEKEEYLEMIKTGHLNIIVGTHSLLGSRVVYSNLGLL 397
Query: 410 VVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPI 469
VVDEEQRFGVKQKEKIASFK SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER+PI
Sbjct: 398 VVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERIPI 457
Query: 470 KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 529
KTHLS+F KEKVI AIK ELDRGGQVFYVLPRIKGLEE MDFL++AFP +DIA+AHG+QY
Sbjct: 458 KTHLSSFRKEKVIEAIKNELDRGGQVFYVLPRIKGLEEVMDFLEEAFPDIDIAMAHGKQY 517
Query: 530 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 589
S+QLEETME+FAQG IKILICTNIVESGLDIQNANTII+QDVQQFGLAQLYQLRGRVGRA
Sbjct: 518 SKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRA 577
Query: 590 DKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 649
DKEAHAYLFYPDKSLLSDQALERL+ALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD
Sbjct: 578 DKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 637
Query: 650 VGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNE 709
VGNVG+DLFFEMLFESLSKV+E + SVPY V+IDININPRLPSEY+N+LENPME+++E
Sbjct: 638 VGNVGIDLFFEMLFESLSKVEELRIFSVPYDLVKIDININPRLPSEYVNYLENPMEIIHE 697
Query: 710 AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGM 769
AEKAAE+D+W LMQFTE+LRRQYGKEPYSMEI+LKKLYVRRMAAD+G+ +IYASGKMV M
Sbjct: 698 AEKAAEKDMWSLMQFTENLRRQYGKEPYSMEIILKKLYVRRMAADLGVNRIYASGKMVVM 757
Query: 770 KTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASL 829
KTNM+KKVFK++ DSMT +V+R+SL +EGDQI AELLLELPREQLLNW+FQCL+EL+ASL
Sbjct: 758 KTNMSKKVFKLITDSMTCDVYRSSLIYEGDQIMAELLLELPREQLLNWMFQCLSELHASL 817
Query: 830 PALIKY 835
PALIKY
Sbjct: 818 PALIKY 823
>gi|224128810|ref|XP_002320427.1| predicted protein [Populus trichocarpa]
gi|222861200|gb|EEE98742.1| predicted protein [Populus trichocarpa]
Length = 817
Score = 1360 bits (3520), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 666/820 (81%), Positives = 730/820 (89%), Gaps = 26/820 (3%)
Query: 29 LFTAHKQAKKKQSFQFKAVY----TPGLSLSS--------PTSKKPTQRREKNENETDDI 76
+F + K ++ F K Y P SL++ P S + + K E E D I
Sbjct: 11 IFKLNSSTKLRRLFSVKLPYRHNHKPSFSLTNAVRTQTAVPFSSRTATPKYKIETEQDPI 70
Query: 77 SILNERIRRDF-GKREATRPVMDSEEADKYIQLVKEQQQKGLQKLKGKKSGGGGAGAGAG 135
SILNERIRR GKRE +RP+MDSEEAD+YIQ+VKEQQQ+GLQKLKG + A G
Sbjct: 71 SILNERIRRQHHGKREGSRPIMDSEEADQYIQMVKEQQQRGLQKLKGDRV------AKEG 124
Query: 136 DSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG 195
D FSYKVDPY+LRSGDYVVHKKVGIG+F GIKFDV K S+ IEYVFIEYADG
Sbjct: 125 DV-------FSYKVDPYTLRSGDYVVHKKVGIGRFFGIKFDVPKGSSEAIEYVFIEYADG 177
Query: 196 MAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYL 255
MAKLPV QASRMLYRYNLPNETKRPRTLSKLSDT AWERRKTKGKVAIQKMVVDLMELYL
Sbjct: 178 MAKLPVMQASRMLYRYNLPNETKRPRTLSKLSDTGAWERRKTKGKVAIQKMVVDLMELYL 237
Query: 256 HRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFG 315
HRLKQ+RPPYPK P +AEFAAQFPYEPTPDQK AF+DVERDL +RETPMDRLICGDVGFG
Sbjct: 238 HRLKQRRPPYPKTPFMAEFAAQFPYEPTPDQKLAFIDVERDLNQRETPMDRLICGDVGFG 297
Query: 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 375
KTEVALRAIFC+VSAGKQAMVLAPTIVLAKQHFDV+SERFSKY IKV LLSRFQSKAEK
Sbjct: 298 KTEVALRAIFCIVSAGKQAMVLAPTIVLAKQHFDVISERFSKYSHIKVALLSRFQSKAEK 357
Query: 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVL 435
E +L+MI+HGHL+IIVGTHSLLG+RVVYNNLGLLVVDEEQRFGVKQKEKIASFK SVDVL
Sbjct: 358 EMYLNMIEHGHLDIIVGTHSLLGNRVVYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVL 417
Query: 436 TLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQV 495
TLSATPIPRTLYLALTGFRDASLISTPPPER+PIKTHLSA++K+K+ISAIKYELDRGGQV
Sbjct: 418 TLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTHLSAYNKDKLISAIKYELDRGGQV 477
Query: 496 FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555
FYVLPRIKGLEE DFL+Q+FP V+IA+AHGQQYS+QLE+TME+FAQG IKILICTNIVE
Sbjct: 478 FYVLPRIKGLEEVKDFLEQSFPNVEIAVAHGQQYSKQLEDTMEQFAQGEIKILICTNIVE 537
Query: 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA 615
SGLDIQNANTII+QDVQ FGLAQLYQLRGRVGRADKEAHA+LFYPDKS+L+DQALERLAA
Sbjct: 538 SGLDIQNANTIIIQDVQLFGLAQLYQLRGRVGRADKEAHAHLFYPDKSMLTDQALERLAA 597
Query: 616 LEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVI 675
LEECRELGQGFQLAE+DMGIRGFGTIFGEQQTGDVGNVGVD FFEMLFESLSKVDEH VI
Sbjct: 598 LEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGVDFFFEMLFESLSKVDEHRVI 657
Query: 676 SVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKE 735
SVPY+SVQID+NINP LPS+YIN+LENPME++NEAEKAAE DIW LMQFTE+LRRQYGKE
Sbjct: 658 SVPYQSVQIDLNINPHLPSDYINYLENPMEIINEAEKAAETDIWSLMQFTENLRRQYGKE 717
Query: 736 PYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLT 795
P SMEI+LKKLYVRRMAADIGIT+IYASGKMVGM+TNM+KKVFK+M DSM+SE+HRNSL
Sbjct: 718 PSSMEIILKKLYVRRMAADIGITRIYASGKMVGMETNMSKKVFKLMTDSMSSEMHRNSLF 777
Query: 796 FEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY 835
F+G++IKAELLLELPR QLLNWIFQC+AEL+A LPALIKY
Sbjct: 778 FDGNEIKAELLLELPRAQLLNWIFQCIAELHACLPALIKY 817
>gi|225451661|ref|XP_002276313.1| PREDICTED: transcription-repair-coupling factor-like [Vitis
vinifera]
Length = 823
Score = 1357 bits (3511), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 655/823 (79%), Positives = 738/823 (89%), Gaps = 20/823 (2%)
Query: 14 TSTSAAPPRLWGWTSLFTAHKQAKKKQSFQFKAVYTPGLSLSSPTSKKPTQRREKNENET 73
+S + PR+W + H + K+ AVYT G+S++ + QRRE+ E E+
Sbjct: 20 SSFLGSSPRVWRFFFACPCHARIKRTHLLT-TAVYTEGVSIT-----RSVQRRERMEPES 73
Query: 74 DDISILNERIRRDFGKREATR-PVMDSEEADKYIQLVKEQQQKGLQKLKGKKSGGGGAGA 132
DDI+ILNERIRR+ KR+ +R PV+DSEEADKYIQLVKEQQ++GLQKLKG++ G
Sbjct: 74 DDITILNERIRREQSKRDVSRAPVVDSEEADKYIQLVKEQQRRGLQKLKGERVGKEN--- 130
Query: 133 GAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY 192
G FSYKVDPY+LRSGDYVVHKKVGIG+FVGIK DV KDS+ PIEYVFIEY
Sbjct: 131 ----------GQFSYKVDPYTLRSGDYVVHKKVGIGRFVGIKLDVPKDSSNPIEYVFIEY 180
Query: 193 ADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLME 252
ADGMAKLPVKQASRMLYRYNLP+E+KRPRTLSKLSDT+ WERR+ KG+VAIQKMVVDLME
Sbjct: 181 ADGMAKLPVKQASRMLYRYNLPSESKRPRTLSKLSDTSIWERRRIKGRVAIQKMVVDLME 240
Query: 253 LYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDV 312
LYLHRLKQKRPPYPK+P +AEF AQF YEPTPDQK+AF+DVE DLTERETPMDRLICGDV
Sbjct: 241 LYLHRLKQKRPPYPKSPGMAEFEAQFSYEPTPDQKQAFIDVEEDLTERETPMDRLICGDV 300
Query: 313 GFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSK 372
GFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV++ERFSKYP+IKVGLLSRFQ+
Sbjct: 301 GFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVITERFSKYPNIKVGLLSRFQTT 360
Query: 373 AEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISV 432
AEKE+HL MIKHG L+IIVGTHSLLG+RVVY+NLGLLVVDEEQRFGVKQKEKIASFK SV
Sbjct: 361 AEKEKHLRMIKHGDLDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSV 420
Query: 433 DVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRG 492
DVLTLSATPIPRTLYLALTGFRDASLISTPPPER+PI THLSA++KEK+ISAIK+EL RG
Sbjct: 421 DVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIITHLSAYNKEKIISAIKFELGRG 480
Query: 493 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN 552
GQ+FYVLPRIKGLEE M+FL+ +FP V+IAIAHG+QYS+QLEETM++FAQG IKILICTN
Sbjct: 481 GQIFYVLPRIKGLEEVMEFLECSFPDVEIAIAHGKQYSKQLEETMDRFAQGEIKILICTN 540
Query: 553 IVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALER 612
IVESGLDIQNANTII+Q+VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALER
Sbjct: 541 IVESGLDIQNANTIIIQEVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALER 600
Query: 613 LAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEH 672
L+ALEECR+LGQGFQLAE+DMGIRGFG IFGEQQTGDVGNVG+DLFFEMLFESLSKV+EH
Sbjct: 601 LSALEECRDLGQGFQLAERDMGIRGFGNIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEH 660
Query: 673 CVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQY 732
+ISVPY+SVQ DININP LPSEYIN+LENPME+++EAEK+AE+DIW LMQFTE+LRRQY
Sbjct: 661 RLISVPYQSVQFDININPHLPSEYINYLENPMEIISEAEKSAEEDIWSLMQFTENLRRQY 720
Query: 733 GKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRN 792
GKEPYSME+LLKKLYV+RMAAD+GIT+IYASGK V M+T MNKKVFK++ DSM S++ RN
Sbjct: 721 GKEPYSMEVLLKKLYVKRMAADLGITRIYASGKTVIMRTKMNKKVFKLITDSMASDIIRN 780
Query: 793 SLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY 835
SL FE +QIKAELLLELPREQ LNW+FQCLAEL+ASLPALIKY
Sbjct: 781 SLVFEENQIKAELLLELPREQFLNWVFQCLAELHASLPALIKY 823
>gi|356570277|ref|XP_003553316.1| PREDICTED: transcription-repair-coupling factor-like [Glycine max]
Length = 823
Score = 1316 bits (3405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 640/831 (77%), Positives = 724/831 (87%), Gaps = 22/831 (2%)
Query: 9 PHLK--LTSTSAAPPRLWGWTSL-FTAHKQAKKKQSFQFKAVYTPGLSLSSP-TSKKPTQ 64
PH+ L S + PR W L + +H + + + T + SP T P+
Sbjct: 11 PHIPTPLISKLTSSPRTWSLFILKYPSHPKTNSNNNKRLILSPTNAVYTQSPHTPSTPS- 69
Query: 65 RREKNENETDDISILNERIRRDFGKREATRPVMDSEEADKYIQLVKEQQQKGLQKLKGKK 124
K E D I++LNERIRRDF K+EA R VMDSEEA KY+Q+VK QQQ+GLQKLKG +
Sbjct: 70 ---KTELHNDAITVLNERIRRDFSKKEAFRTVMDSEEAGKYMQMVKVQQQRGLQKLKGDR 126
Query: 125 SGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVP 184
G D G FSYKVDPY+LRSGDYVVH+KVG+G+FVG++FDV K+S+
Sbjct: 127 --------GTKD------GVFSYKVDPYTLRSGDYVVHRKVGVGRFVGMRFDVAKNSSQH 172
Query: 185 IEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQ 244
EYVFIEYADGMAKLPV QA++MLYRY+LPNETK+P+ LSKLSDT+AWERRK KGKVAIQ
Sbjct: 173 TEYVFIEYADGMAKLPVHQAAKMLYRYSLPNETKKPKALSKLSDTSAWERRKVKGKVAIQ 232
Query: 245 KMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPM 304
KMVVDLMELYLHRLKQ+RPPYPK+PA+A+FAAQF YEPTPDQK+AF+DVERDLTERETPM
Sbjct: 233 KMVVDLMELYLHRLKQRRPPYPKSPAMAKFAAQFRYEPTPDQKRAFIDVERDLTERETPM 292
Query: 305 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVG 364
DRLICGDVGFGKTEVALRAI CVVSA KQAMVLAPTIVLAKQHFDV+SERFS YPDIKVG
Sbjct: 293 DRLICGDVGFGKTEVALRAISCVVSAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVG 352
Query: 365 LLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEK 424
LLSRFQ+KAEKEE+LD IK+G L+IIVGTHSLLG RV YNNLGLLVVDEEQRFGVKQKEK
Sbjct: 353 LLSRFQTKAEKEENLDKIKNGTLDIIVGTHSLLGDRVTYNNLGLLVVDEEQRFGVKQKEK 412
Query: 425 IASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISA 484
IASFK SVDVLTLSATPIPRTLYLALTGFRDASL+STPPPER+PIKTHLS+F ++KV+SA
Sbjct: 413 IASFKTSVDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVPIKTHLSSFGEDKVVSA 472
Query: 485 IKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGA 544
IKYELDRGGQVFYVLPRIKGL+ M FL ++FP V+IAIAHG+ YS+QLE+TMEKFA G
Sbjct: 473 IKYELDRGGQVFYVLPRIKGLDGVMAFLVESFPNVEIAIAHGKLYSKQLEDTMEKFALGE 532
Query: 545 IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604
IKILICTNIVESGLDIQNANTII+QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK L
Sbjct: 533 IKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKGL 592
Query: 605 LSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFE 664
LSDQALERLAA+EECRELGQGFQLAEKDMGIRGFG IFGEQQ+GDVGNVG+DLFFEMLFE
Sbjct: 593 LSDQALERLAAIEECRELGQGFQLAEKDMGIRGFGAIFGEQQSGDVGNVGIDLFFEMLFE 652
Query: 665 SLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQF 724
SLSKV++H V+SVPY SVQ+DININP LPS+YIN+L+NPM+++N+AE+ AE+DIW LMQF
Sbjct: 653 SLSKVEDHHVVSVPYHSVQVDININPHLPSDYINYLDNPMKIINDAERVAEKDIWSLMQF 712
Query: 725 TESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDS 784
TE+LRRQYGKEP SMEILLKKLY+RRMAAD+GIT+IY+SGKM+ MKTNM+KKVFKMM +S
Sbjct: 713 TENLRRQYGKEPRSMEILLKKLYLRRMAADLGITRIYSSGKMIYMKTNMSKKVFKMMTES 772
Query: 785 MTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY 835
M S++HRNSL EGDQIKAELLLELP+EQLLNWIFQCLAEL+ASLP+ IKY
Sbjct: 773 MASDLHRNSLVLEGDQIKAELLLELPKEQLLNWIFQCLAELHASLPSFIKY 823
>gi|356560412|ref|XP_003548486.1| PREDICTED: transcription-repair-coupling factor-like [Glycine max]
Length = 826
Score = 1316 bits (3405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 633/824 (76%), Positives = 722/824 (87%), Gaps = 16/824 (1%)
Query: 13 LTSTSAAPPRLWGWTSL-FTAHKQAKKKQSFQFKAVYTPGLSLSSPTSKKPTQRREKNEN 71
L S ++ PR W L + +H + + + +P ++ + + P+ K E
Sbjct: 18 LISKISSSPRTWSLFILTYPSHPKNNNNNNNNKRLFLSPTNAVYTQSPYTPSTP-SKTEL 76
Query: 72 ETDDISILNERIRRDFGKREATRPVMDSEEADKYIQLVKEQQQKGLQKLKGKKSGGGGAG 131
D I++LNERIRRD K+EA R VMDSEEA KY+++VK QQQ+GLQKLKG + G
Sbjct: 77 HNDPITVLNERIRRDLSKKEAFRTVMDSEEAGKYMKMVKVQQQRGLQKLKGDRESKDGV- 135
Query: 132 AGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIE 191
FSYKVDPY+LRSGDYVVH+KVG+G+FVG++FDV K+S+ P EYVFIE
Sbjct: 136 -------------FSYKVDPYTLRSGDYVVHRKVGVGRFVGMRFDVAKNSSQPTEYVFIE 182
Query: 192 YADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLM 251
YADGMAKLPV +A++MLYRY+LPNETK+P+ LSKLSDT+AWE+RK KGKVAIQKMVVDLM
Sbjct: 183 YADGMAKLPVNKAAKMLYRYSLPNETKKPKALSKLSDTSAWEKRKVKGKVAIQKMVVDLM 242
Query: 252 ELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGD 311
ELYLHRLKQ+RP YPK+PA+AEFAA FPYEPTPDQK+AF+DVERDLTERETPMDRLICGD
Sbjct: 243 ELYLHRLKQRRPLYPKSPAMAEFAALFPYEPTPDQKRAFIDVERDLTERETPMDRLICGD 302
Query: 312 VGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQS 371
VGFGKTEVALRAI CVVSA KQAMVLAPTIVLAKQHFDV+SERFS YPDIKVGLLSRFQ+
Sbjct: 303 VGFGKTEVALRAISCVVSAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRFQT 362
Query: 372 KAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKIS 431
KAEKEE+LD IK+G L+IIVGTHSLLG RV YNNLGLLVVDEEQRFGVKQKEKIASFK S
Sbjct: 363 KAEKEENLDKIKNGSLDIIVGTHSLLGDRVTYNNLGLLVVDEEQRFGVKQKEKIASFKTS 422
Query: 432 VDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDR 491
VDVLTLSATPIPRTLYLALTGFRDASL+STPPPER+PIKTHLS+FS++KV+SAIKYELDR
Sbjct: 423 VDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVPIKTHLSSFSEDKVVSAIKYELDR 482
Query: 492 GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICT 551
GGQVFYVLPRIKGL+E M FL ++FP V+IAIAHG+ YS+QLE+TMEKFA G IKILICT
Sbjct: 483 GGQVFYVLPRIKGLDEVMTFLAESFPNVEIAIAHGKLYSKQLEDTMEKFALGEIKILICT 542
Query: 552 NIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALE 611
NIVESGLDIQNANTII+QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALE
Sbjct: 543 NIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALE 602
Query: 612 RLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDE 671
RLAA+EECRELGQGFQLAEKDMGIRGFG IFGEQQ+GDVGNVG+DLFFEMLFESLSKV++
Sbjct: 603 RLAAIEECRELGQGFQLAEKDMGIRGFGAIFGEQQSGDVGNVGIDLFFEMLFESLSKVED 662
Query: 672 HCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQ 731
H V+SVPY SVQ+DININP LPS+YIN+LENP++++N+AE+ AE+DIW LMQFTE+LRRQ
Sbjct: 663 HRVVSVPYHSVQVDININPHLPSDYINYLENPLKIINDAERVAEKDIWSLMQFTENLRRQ 722
Query: 732 YGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHR 791
YGKEP SMEILLKKLY+RRMAAD+GIT IY+SGKM+ MKTNM+KKVFKMM +SM S++HR
Sbjct: 723 YGKEPRSMEILLKKLYLRRMAADLGITSIYSSGKMIYMKTNMSKKVFKMMTESMASDLHR 782
Query: 792 NSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY 835
NSL EGDQIKAELLLELP+EQLLNWIFQCLAEL+ASLP+ IKY
Sbjct: 783 NSLVLEGDQIKAELLLELPKEQLLNWIFQCLAELHASLPSFIKY 826
>gi|449464970|ref|XP_004150202.1| PREDICTED: transcription-repair-coupling factor-like [Cucumis
sativus]
gi|449515466|ref|XP_004164770.1| PREDICTED: transcription-repair-coupling factor-like [Cucumis
sativus]
Length = 827
Score = 1315 bits (3402), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 643/831 (77%), Positives = 723/831 (87%), Gaps = 15/831 (1%)
Query: 5 SPNTPHLKLTSTSAAPPRLWGWTSLFTAHKQAKKKQSFQFKAVYTPGLSLSSPTSKKPTQ 64
S + P L S R WG + + + + VY + + P + K ++
Sbjct: 12 SSSPPVLPFKLCSFPTLRGWGLFNRNSTFRHFPNRCVSITNVVYAEDVIV--PGTAKSSR 69
Query: 65 RREKNENETDDISILNERIRRDFGKREATRPVMDSEEADKYIQLVKEQQQKGLQKLKGKK 124
RR++ E E D IS+LNERI R GKR+++R MDSEEAD+YIQ+VKEQQQ+GLQKLKG
Sbjct: 70 RRDQIELERDSISLLNERILRFHGKRDSSRTAMDSEEADRYIQMVKEQQQRGLQKLKG-- 127
Query: 125 SGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVP 184
D + GF+YKVDPY+LRSGDYVVHKKVGIG+FVGIKFDVQK ST
Sbjct: 128 -----------DRQRKESDGFNYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEA 176
Query: 185 IEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQ 244
IEYVFIEYADGMAKLPVKQASRMLYRY+LPNE KRPRTLSKL+DTT WE+RKTKGK+AIQ
Sbjct: 177 IEYVFIEYADGMAKLPVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQ 236
Query: 245 KMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPM 304
KMVVDLMELYLHRLKQ+R PYPK A+ EF+AQFPYEPT DQK+AF DVE+DLT RETPM
Sbjct: 237 KMVVDLMELYLHRLKQRRSPYPKCSAMEEFSAQFPYEPTVDQKEAFRDVEKDLTGRETPM 296
Query: 305 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVG 364
DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF+V+++RFS +PD+++G
Sbjct: 297 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFEVITQRFSSFPDVQIG 356
Query: 365 LLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEK 424
LLSRFQ+KAEKE+HL+MIK G LNIIVGTHSLLG RVVY+NLGLLVVDEEQRFGVKQKEK
Sbjct: 357 LLSRFQTKAEKEKHLEMIKEGQLNIIVGTHSLLGDRVVYSNLGLLVVDEEQRFGVKQKEK 416
Query: 425 IASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISA 484
IASFK SVDVLTLSATPIPRTLYLALTGFRDASLI+TPPPER+PIKTHLS+FSKEKV SA
Sbjct: 417 IASFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVKSA 476
Query: 485 IKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGA 544
IKYEL+RGGQVFYVLPRIKGLEE +FL+ +FP ++IA+AHG+QYS+QLEETME FA G
Sbjct: 477 IKYELERGGQVFYVLPRIKGLEEVKEFLEASFPDIEIALAHGKQYSKQLEETMENFALGD 536
Query: 545 IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604
IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEA+AYLFYPDKSL
Sbjct: 537 IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLFYPDKSL 596
Query: 605 LSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFE 664
LSD ALERLAALEECRELGQGFQLAE+DMGIRGFGTIFGEQQTGDVGNVG+DLFFEMLF+
Sbjct: 597 LSDDALERLAALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFD 656
Query: 665 SLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQF 724
SLSKVDEH V+SVPY+SV+IDI+INP LPSEYIN+LENPM+++N AE+AAE DIW LMQF
Sbjct: 657 SLSKVDEHRVVSVPYQSVKIDIDINPHLPSEYINYLENPMKILNGAERAAETDIWTLMQF 716
Query: 725 TESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDS 784
TE+LRR +GKEPYSMEILLKKLYVRRMAAD+GI++IYASGK V M+TNMNKKVFK++ DS
Sbjct: 717 TENLRRHHGKEPYSMEILLKKLYVRRMAADLGISRIYASGKTVCMETNMNKKVFKLISDS 776
Query: 785 MTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY 835
MTSEVHRN L+FE QIKA LLLELPREQLLNWIF+CL EL+AS PALIKY
Sbjct: 777 MTSEVHRNCLSFEEHQIKAGLLLELPREQLLNWIFECLVELHASFPALIKY 827
>gi|224069623|ref|XP_002303013.1| predicted protein [Populus trichocarpa]
gi|222844739|gb|EEE82286.1| predicted protein [Populus trichocarpa]
Length = 939
Score = 1257 bits (3252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 634/851 (74%), Positives = 703/851 (82%), Gaps = 68/851 (7%)
Query: 1 MASFSPNTPHLKLTSTSAAPPRLWGWTSLFTAHKQAKKKQSFQFKAVYTPGLSLSSPTSK 60
MAS +TP L S+A PR LF+ + K F + P S
Sbjct: 1 MASLDISTP-LIFKLNSSAKPR-----KLFSLKYPCRHKHRPSFSLTNAAHTQTALPFSS 54
Query: 61 KPTQRREKNENETDDISILNERIRRDF-GKREAT--RPVMDSEEADKYIQLVKEQQQKGL 117
+ T + K E+E D ISILNERIRR GKRE + +P+MDSEEAD+YIQ+VKEQQQ+GL
Sbjct: 55 RTTTPKYKIESEQDPISILNERIRRQHHGKREGSNSKPIMDSEEADQYIQMVKEQQQRGL 114
Query: 118 QKLKGKKSGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDV 177
QKLKG + A GD FSYKVDPY+L SGDYVVHKKVGIG+FVGIKFD+
Sbjct: 115 QKLKGDRV------AKEGDV-------FSYKVDPYTLSSGDYVVHKKVGIGRFVGIKFDM 161
Query: 178 QKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKT 237
K S+ IEYVFIEYADGMAKLPVKQASRMLYRYNLPN+TK+PRTLSKLSD AWERRKT
Sbjct: 162 SKGSSEAIEYVFIEYADGMAKLPVKQASRMLYRYNLPNDTKKPRTLSKLSDNGAWERRKT 221
Query: 238 KGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDL 297
KGKVAIQKMVVDLMELYLHRLKQ+RPPYPK PA+ +F+AQFPYEPTPDQK+AF+DV RDL
Sbjct: 222 KGKVAIQKMVVDLMELYLHRLKQRRPPYPKTPAMVDFSAQFPYEPTPDQKQAFIDVMRDL 281
Query: 298 TERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK 357
TERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLA+QHFDV+SERFSK
Sbjct: 282 TERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLARQHFDVISERFSK 341
Query: 358 YPDIKVGLLSRFQ------SKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVV 411
YP IKV LLSRFQ SKAEKE +L+M KHGHL+IIVGTHSLLGSRVVYNNLGLLVV
Sbjct: 342 YPHIKVALLSRFQAYLLLQSKAEKEMYLEMTKHGHLDIIVGTHSLLGSRVVYNNLGLLVV 401
Query: 412 DEEQ---------------------------RFGVKQKEKIASFKISVDVLTLSATPIPR 444
DEEQ RFGVKQKEKIASFK SVDVLTL+ATPIPR
Sbjct: 402 DEEQTTNKRKGKGNFSINHDFANEKEKKESRRFGVKQKEKIASFKTSVDVLTLTATPIPR 461
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLYLALTGFRDASLISTPPPER+PIKTHLSA+SKE++ISAIKYELDRGGQVFYVLPRIKG
Sbjct: 462 TLYLALTGFRDASLISTPPPERVPIKTHLSAYSKERLISAIKYELDRGGQVFYVLPRIKG 521
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQ-------------QYSRQLEETMEKFAQGAIKILICT 551
LEE DFL+Q+F V+IA+AHGQ QYS+ LE+TME+FAQG IKILICT
Sbjct: 522 LEEVKDFLEQSFSNVEIAVAHGQHVTKKGNSFLLVKQYSKLLEDTMEQFAQGEIKILICT 581
Query: 552 NIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALE 611
NIVESGLDIQNANTII+QDVQ FGLAQLYQLRGRVGRADKEAHA+LFYPDKS+L+DQALE
Sbjct: 582 NIVESGLDIQNANTIIIQDVQLFGLAQLYQLRGRVGRADKEAHAHLFYPDKSMLTDQALE 641
Query: 612 RLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDE 671
RLAALEEC+ELG+GFQLAE+DMGIRGFGTIFGEQQTGDVGNVG+D FFEMLFESLSKVDE
Sbjct: 642 RLAALEECQELGRGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDFFFEMLFESLSKVDE 701
Query: 672 HCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQ 731
H VISVPY+SVQ+D+NINP LPS+YIN LENPME++NEAEKAAE DIW LMQFTE+LR Q
Sbjct: 702 HRVISVPYQSVQVDLNINPHLPSDYINSLENPMEIINEAEKAAETDIWSLMQFTENLRCQ 761
Query: 732 YGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHR 791
YGKEP SMEILLKKLY+RRMAADIGIT+IYASGKMVGM+TNM+KKVFK+M DSM+S++HR
Sbjct: 762 YGKEPCSMEILLKKLYIRRMAADIGITRIYASGKMVGMETNMSKKVFKLMADSMSSDIHR 821
Query: 792 NSLTFEGDQIK 802
NSL F+G+QIK
Sbjct: 822 NSLVFDGNQIK 832
>gi|255543481|ref|XP_002512803.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223547814|gb|EEF49306.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 857
Score = 1254 bits (3245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 629/817 (76%), Positives = 712/817 (87%), Gaps = 38/817 (4%)
Query: 1 MASFSPNTPHL-KLTSTSAAPPRLWGWTSLFTAHKQAKKKQSFQFKAVYTPGLSLS---- 55
MAS +TP + KL ST+ P L ++LF K++SF +K Y SLS
Sbjct: 1 MASLDISTPLIFKLNSTT---PDL---SNLFNI-----KRRSFLYKHKYIHNHSLSIFAR 49
Query: 56 --------SPTSKKPTQRREKNENETDDISILNERIRRDFGKREATR-PVMDSEEADKYI 106
+ T+ + R++ + E D IS+LNERI RD+ KREA+ P++DS+EADKYI
Sbjct: 50 ATSVSTPITTTTTRFRPRKDNVDTEQDSISVLNERIFRDYSKREASSTPILDSKEADKYI 109
Query: 107 QLVKEQQQKGLQKLKGKKSGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVG 166
++VKEQQQ+GLQKLKG+K G G GGFSY+VDPY L SGDYVVHKKVG
Sbjct: 110 KMVKEQQQRGLQKLKGEKQG-------------KGKGGFSYRVDPYLLNSGDYVVHKKVG 156
Query: 167 IGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKL 226
+G+FVGIKFDV K ST PIEYVFIEYADGMAKLPVKQAS+MLYRY+LPNE KRPRTL+KL
Sbjct: 157 VGRFVGIKFDVSKSSTEPIEYVFIEYADGMAKLPVKQASKMLYRYSLPNEKKRPRTLNKL 216
Query: 227 SDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQ 286
+DT+ WE+RKTKGK+AIQKMVVDLMELYLHRLKQ+RPPYPK+P +AEF AQFPYEPTPDQ
Sbjct: 217 NDTSTWEKRKTKGKIAIQKMVVDLMELYLHRLKQRRPPYPKSPVMAEFTAQFPYEPTPDQ 276
Query: 287 KKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 346
+AF DVE+DLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ
Sbjct: 277 FQAFNDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 336
Query: 347 HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNL 406
HF+V+SERFSKY +IKVGLLSRFQ+++ KE + +MIK G LNI+VGTHSLLGSRVVYNNL
Sbjct: 337 HFEVISERFSKYSNIKVGLLSRFQTQSVKEMYYEMIKQGDLNIVVGTHSLLGSRVVYNNL 396
Query: 407 GLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER 466
GLLVVDEEQRFGVKQKEKIASFK SVDVLTLSATPIPRTLYLALTGFRDASLIST PPER
Sbjct: 397 GLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTAPPER 456
Query: 467 LPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHG 526
+P+KT LSA+SKEKVISAIKYELDR GQVFYVLP IKGLEE MDFL+Q+FP V+ AIAHG
Sbjct: 457 VPVKTFLSAYSKEKVISAIKYELDRDGQVFYVLPLIKGLEEVMDFLEQSFPKVEKAIAHG 516
Query: 527 QQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRV 586
+QYS+QLEETMEKF QG IKILICTNIVESGLDIQNANTII+QD+Q FGLAQLYQLRGRV
Sbjct: 517 KQYSKQLEETMEKFVQGEIKILICTNIVESGLDIQNANTIIIQDIQHFGLAQLYQLRGRV 576
Query: 587 GRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQ 646
GRADKEA+A+LFYPDKSLLSDQALERL ALEEC+ELGQGFQLAE+DMGIRGFGTIFGEQQ
Sbjct: 577 GRADKEAYAHLFYPDKSLLSDQALERLKALEECKELGQGFQLAERDMGIRGFGTIFGEQQ 636
Query: 647 TGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEM 706
TGDVGNVG+DLFFEMLFESLSKV+EH V++V Y+SVQID+N+NP LPS+YIN+LENPME+
Sbjct: 637 TGDVGNVGIDLFFEMLFESLSKVEEHRVVAVSYQSVQIDLNVNPHLPSDYINYLENPMEI 696
Query: 707 VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM 766
+++AEKAAE+DIW LMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD+GI +IYASGKM
Sbjct: 697 ISQAEKAAEKDIWSLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADLGIRRIYASGKM 756
Query: 767 VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
VGMKTN++KKVFK+MIDSMTS+VHRNSL F+GDQIK
Sbjct: 757 VGMKTNLSKKVFKLMIDSMTSDVHRNSLEFDGDQIKV 793
>gi|296082243|emb|CBI21248.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 1167 bits (3018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/640 (86%), Positives = 610/640 (95%)
Query: 196 MAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYL 255
MAKLPVKQASRMLYRYNLP+E+KRPRTLSKLSDT+ WERR+ KG+VAIQKMVVDLMELYL
Sbjct: 1 MAKLPVKQASRMLYRYNLPSESKRPRTLSKLSDTSIWERRRIKGRVAIQKMVVDLMELYL 60
Query: 256 HRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFG 315
HRLKQKRPPYPK+P +AEF AQF YEPTPDQK+AF+DVE DLTERETPMDRLICGDVGFG
Sbjct: 61 HRLKQKRPPYPKSPGMAEFEAQFSYEPTPDQKQAFIDVEEDLTERETPMDRLICGDVGFG 120
Query: 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 375
KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV++ERFSKYP+IKVGLLSRFQ+ AEK
Sbjct: 121 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVITERFSKYPNIKVGLLSRFQTTAEK 180
Query: 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVL 435
E+HL MIKHG L+IIVGTHSLLG+RVVY+NLGLLVVDEEQRFGVKQKEKIASFK SVDVL
Sbjct: 181 EKHLRMIKHGDLDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVL 240
Query: 436 TLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQV 495
TLSATPIPRTLYLALTGFRDASLISTPPPER+PI THLSA++KEK+ISAIK+EL RGGQ+
Sbjct: 241 TLSATPIPRTLYLALTGFRDASLISTPPPERVPIITHLSAYNKEKIISAIKFELGRGGQI 300
Query: 496 FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555
FYVLPRIKGLEE M+FL+ +FP V+IAIAHG+QYS+QLEETM++FAQG IKILICTNIVE
Sbjct: 301 FYVLPRIKGLEEVMEFLECSFPDVEIAIAHGKQYSKQLEETMDRFAQGEIKILICTNIVE 360
Query: 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA 615
SGLDIQNANTII+Q+VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERL+A
Sbjct: 361 SGLDIQNANTIIIQEVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSA 420
Query: 616 LEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVI 675
LEECR+LGQGFQLAE+DMGIRGFG IFGEQQTGDVGNVG+DLFFEMLFESLSKV+EH +I
Sbjct: 421 LEECRDLGQGFQLAERDMGIRGFGNIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRLI 480
Query: 676 SVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKE 735
SVPY+SVQ DININP LPSEYIN+LENPME+++EAEK+AE+DIW LMQFTE+LRRQYGKE
Sbjct: 481 SVPYQSVQFDININPHLPSEYINYLENPMEIISEAEKSAEEDIWSLMQFTENLRRQYGKE 540
Query: 736 PYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLT 795
PYSME+LLKKLYV+RMAAD+GIT+IYASGK V M+T MNKKVFK++ DSM S++ RNSL
Sbjct: 541 PYSMEVLLKKLYVKRMAADLGITRIYASGKTVIMRTKMNKKVFKLITDSMASDIIRNSLV 600
Query: 796 FEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY 835
FE +QIKAELLLELPREQ LNW+FQCLAEL+ASLPALIKY
Sbjct: 601 FEENQIKAELLLELPREQFLNWVFQCLAELHASLPALIKY 640
>gi|125577373|gb|EAZ18595.1| hypothetical protein OsJ_34121 [Oryza sativa Japonica Group]
Length = 832
Score = 1035 bits (2676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/776 (63%), Positives = 627/776 (80%), Gaps = 20/776 (2%)
Query: 74 DDISILNERIRRDFGKREATRPV---MDSEEADKYIQLVKEQQQKGLQKLKGKKSGGGGA 130
DDI+ LN R+R +R+A+ +D +A+ Y+++++EQQ+ GL++L+G G
Sbjct: 63 DDIAQLNHRLRALVRRRDASSSAALSVDPAQAEAYLRMIREQQRMGLRQLRGDGDGAASQ 122
Query: 131 GAGAGDS----------GYNGAGG-FSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQK 179
+ G AG ++VDP L +G+YVVHKKVG+GKFV I
Sbjct: 123 EGESDGDGDEGGGGRRKGVVAAGSSLGHRVDPRELEAGEYVVHKKVGVGKFVCIS----- 177
Query: 180 DSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKG 239
+ ++YVFI+YAD MAKL V QA+RMLYRYNLP+E +RPR LSKL+D + WE+R+ KG
Sbjct: 178 -AEDGLDYVFIQYADAMAKLAVDQAARMLYRYNLPHEKQRPRNLSKLNDPSTWEKRRLKG 236
Query: 240 KVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTE 299
K+A+QKMVV+LMELYL R++QKRPPYPK + +F A+FPYEPTPDQ +AF+DV++DLTE
Sbjct: 237 KLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTE 296
Query: 300 RETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP 359
RETPMDRLICGDVGFGKTEVA+RAIF V+SAG QAMVLAPT++LAKQH+DV+SERFS YP
Sbjct: 297 RETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYP 356
Query: 360 DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV 419
DIKV + S Q+K EK+E + I++G L+IIVGTH++L R+ YNNLGLLVVDEEQ+FGV
Sbjct: 357 DIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGV 416
Query: 420 KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKE 479
+QKEKIAS+K S+DVLTLSATPIPRTLYLALTGFRDASL+STPPPER+ ++T++S FSKE
Sbjct: 417 QQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKE 476
Query: 480 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEK 539
+ +SAIK+EL RGGQVFYV+PRIK +++ + FL+ + P V +A+AHG++ S+ ++ MEK
Sbjct: 477 RALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEK 536
Query: 540 FAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY 599
FA G +KIL+CT+I+ESG+DI NANT++VQ + FGLAQLYQLRGRVGR+ E AYLFY
Sbjct: 537 FACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFY 596
Query: 600 PDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFF 659
DKSLLS A +RL A+EE +LGQGF +AEKDMGIRGFG++FGEQQ+GDV NVG+DLFF
Sbjct: 597 TDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFF 656
Query: 660 EMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIW 719
+MLF+SLSKVD+ C+I VPYK VQ+DINI+ RL SEYI++LENP+E++NEA KAAE+D+W
Sbjct: 657 DMLFDSLSKVDQFCLIPVPYKDVQLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLW 716
Query: 720 CLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFK 779
L+QFTE LRRQYGKEP ME+LLKKLYVRRMAAD+GI++IY+SGKM+ MKTNMNKKVF+
Sbjct: 717 TLIQFTEDLRRQYGKEPRDMELLLKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKVFR 776
Query: 780 MMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY 835
+M ++M+ E HRNSL+F G +IK ELL+ LP LLNW+F CLA+ YA +PAL+KY
Sbjct: 777 LMREAMSLETHRNSLSFTGKEIKGELLVNLPDTLLLNWLFHCLADCYAVIPALVKY 832
>gi|108864446|gb|ABA94062.2| CarD-like transcriptional regulator family protein, expressed
[Oryza sativa Japonica Group]
Length = 832
Score = 1035 bits (2675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/776 (63%), Positives = 628/776 (80%), Gaps = 20/776 (2%)
Query: 74 DDISILNERIRRDFGKREATRPV---MDSEEADKYIQLVKEQQQKGLQKLKGKKSGGGGA 130
DDI+ LN R+R +R+A+ +D +A+ Y+++++EQQ+ GL++L+G G
Sbjct: 63 DDIAQLNHRLRALVRRRDASSSAALSVDPAQAEAYLRMIREQQRMGLRQLRGDGDGAASQ 122
Query: 131 GAGAGDS----------GYNGAGG-FSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQK 179
+ G AG ++VDP L +G+YVVHKKVG+GKFV I +
Sbjct: 123 EGESDGDGDEGGGGRRKGVVAAGSSLGHRVDPRELEAGEYVVHKKVGVGKFVCIS---AE 179
Query: 180 DSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKG 239
D ++YVFI+YAD MAKL V QA+RMLYRYNLP+E +RPR LSKL+D + WE+R+ KG
Sbjct: 180 DG---LDYVFIQYADAMAKLAVDQAARMLYRYNLPHEKQRPRNLSKLNDPSTWEKRRLKG 236
Query: 240 KVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTE 299
K+A+QKMVV+LMELYL R++QKRPPYPK + +F A+FPYEPTPDQ +AF+DV++DLTE
Sbjct: 237 KLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTE 296
Query: 300 RETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP 359
RETPMDRLICGDVGFGKTEVA+RAIF V+SAG QAMVLAPT++LAKQH+DV+SERFS YP
Sbjct: 297 RETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYP 356
Query: 360 DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV 419
DIKV + S Q+K EK+E + I++G L+IIVGTH++L R+ YNNLGLLVVDEEQ+FGV
Sbjct: 357 DIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGV 416
Query: 420 KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKE 479
+QKEKIAS+K S+DVLTLSATPIPRTLYLALTGFRDASL+STPPPER+ ++T++S FSKE
Sbjct: 417 QQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKE 476
Query: 480 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEK 539
+ +SAIK+EL RGGQVFYV+PRIK +++ + FL+ + P V +A+AHG++ S+ ++ MEK
Sbjct: 477 RALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEK 536
Query: 540 FAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY 599
FA G +KIL+CT+I+ESG+DI NANT++VQ + FGLAQLYQLRGRVGR+ E AYLFY
Sbjct: 537 FACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFY 596
Query: 600 PDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFF 659
DKSLLS A +RL A+EE +LGQGF +AEKDMGIRGFG++FGEQQ+GDV NVG+DLFF
Sbjct: 597 TDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFF 656
Query: 660 EMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIW 719
+MLF+SLSKVD+ C+I VPYK VQ+DINI+ RL SEYI++LENP+E++NEA KAAE+D+W
Sbjct: 657 DMLFDSLSKVDQFCLIPVPYKDVQLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLW 716
Query: 720 CLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFK 779
L+QFTE LRRQYGKEP ME+LLKKLYVRRMAAD+GI++IY+SGKM+ MKTNMNKKVF+
Sbjct: 717 TLIQFTEDLRRQYGKEPRDMELLLKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKVFR 776
Query: 780 MMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY 835
+M ++M+ E HRNSL+F G +IK ELL+ LP LLNW+F CLA+ YA +PAL+KY
Sbjct: 777 LMREAMSLETHRNSLSFTGKEIKGELLVNLPDTLLLNWLFHCLADCYAVIPALVKY 832
>gi|326489969|dbj|BAJ94058.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 826
Score = 1024 bits (2648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/776 (63%), Positives = 615/776 (79%), Gaps = 20/776 (2%)
Query: 74 DDISILNERIR---RDFGKREATRPVMDSEEADKYIQLVKEQQQKGLQKLKG-------K 123
DDIS LN R+R R G A MD +A+ Y+ +++EQQ+ GL++L+ +
Sbjct: 57 DDISQLNNRLRALVRRRGVSSAASSPMDPAQAEAYLHMIREQQRLGLRQLRRDAAEPEYE 116
Query: 124 KSGGGGAGAGAGDS----GYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQK 179
+ G G ++VDP L G+YVVHKKVG+GKFV I + +
Sbjct: 117 RDVGSNGEDEEEGGGRRKGMAAGSSLGHRVDPRELEPGEYVVHKKVGVGKFVCISGEDGE 176
Query: 180 DSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKG 239
D YVFI+YAD MAKL V QA+RMLYRYNLP+E KRPR LSKL+D +AWE+R+ KG
Sbjct: 177 D------YVFIQYADAMAKLAVDQAARMLYRYNLPHEKKRPRNLSKLNDPSAWEKRRLKG 230
Query: 240 KVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTE 299
K+A+QKMVV+LMELYL R++Q+RPPY K A+ +FA++FPYEPTPDQ +AF+D+E DLTE
Sbjct: 231 KLAVQKMVVNLMELYLQRMRQRRPPYRKPEAMDQFASEFPYEPTPDQNQAFIDIENDLTE 290
Query: 300 RETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP 359
RETPMDRLICGDVGFGKTEVA+RAIF VVS G QAMVLAPT++LA QHFDV+SERFS YP
Sbjct: 291 RETPMDRLICGDVGFGKTEVAMRAIFIVVSTGYQAMVLAPTVILANQHFDVMSERFSNYP 350
Query: 360 DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV 419
DIKV + S QSK EK+E + I +GHL IIVGTH+LL R+ YNNLGLLVVDEEQ+FGV
Sbjct: 351 DIKVAIFSGAQSKDEKDELITKITNGHLQIIVGTHALLTERMAYNNLGLLVVDEEQKFGV 410
Query: 420 KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKE 479
+QKEKIAS K S+DVLTLSATPIPRTLYLALTGFRDASL+STPPPER+ +KT++SAFS+E
Sbjct: 411 QQKEKIASLKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVKTYVSAFSRE 470
Query: 480 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEK 539
+SAIK EL RGGQVFYV+PRIK +++ + FL+ + P V +AIAHG++ S+ ++ MEK
Sbjct: 471 SALSAIKLELKRGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAIAHGKKVSKNIQLAMEK 530
Query: 540 FAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY 599
F+ G IKIL+CT+I+ESG+DI NANT+IVQ + FGLAQLYQLRGRVGR+ +E +LFY
Sbjct: 531 FSCGEIKILVCTHIIESGIDIPNANTMIVQYAELFGLAQLYQLRGRVGRSGREGFTHLFY 590
Query: 600 PDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFF 659
DKSLLS A++RL A+EE +LGQGF +AEKDMGIRGFG++FGEQQ+GDV NVGVDLFF
Sbjct: 591 TDKSLLSRIAMDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSMFGEQQSGDVANVGVDLFF 650
Query: 660 EMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIW 719
+MLF+SLSKVD+ + +PYK VQ+DINI+P L SEYI++LENP+E++NEA KAAEQDIW
Sbjct: 651 DMLFDSLSKVDQFRLKPIPYKDVQLDINISPHLSSEYISYLENPVELLNEAAKAAEQDIW 710
Query: 720 CLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFK 779
LMQFTE LRRQYGKEP ME+LLKKLYVRRMAAD+GI++IY SGKM+ MKTNMN+KV++
Sbjct: 711 NLMQFTEGLRRQYGKEPRDMELLLKKLYVRRMAADLGISRIYPSGKMIIMKTNMNRKVYR 770
Query: 780 MMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY 835
+M ++M E HRNSL+F G +IKAELL+ LP LLNW+F CLA+ YA +PAL++Y
Sbjct: 771 LMEETMACETHRNSLSFTGKEIKAELLVNLPDTLLLNWLFHCLADCYAIMPALVRY 826
>gi|242068687|ref|XP_002449620.1| hypothetical protein SORBIDRAFT_05g020300 [Sorghum bicolor]
gi|241935463|gb|EES08608.1| hypothetical protein SORBIDRAFT_05g020300 [Sorghum bicolor]
Length = 834
Score = 1023 bits (2646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/739 (64%), Positives = 613/739 (82%), Gaps = 6/739 (0%)
Query: 97 MDSEEADKYIQLVKEQQQKGLQKLKGKKSGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRS 156
+D +A+ Y++++++QQ+ GL++L+G++ G G ++VDP L
Sbjct: 102 VDPSQAEAYLRMIRDQQRLGLRQLRGEEGESDGDEERGARKGVAAGSSLGHRVDPRELEP 161
Query: 157 GDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNE 216
G+YVVHKKVG+GKF I +D ++YVFI+YADGMAKL V QA+RMLYRYNLP+E
Sbjct: 162 GEYVVHKKVGVGKFACIS---AEDG---VDYVFIQYADGMAKLAVDQAARMLYRYNLPHE 215
Query: 217 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAA 276
RPR LSKL+D + WE+R+ KGK+A+QKMVV+LMELYL R++ RPPYPK ++ +FAA
Sbjct: 216 KTRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRLGRPPYPKPASMDDFAA 275
Query: 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 336
+FPYEPTPDQ +AF+DVE+DLTERETPMDRLICGDVGFGKTEVA+RAIF VVSAG QAMV
Sbjct: 276 EFPYEPTPDQCQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVVSAGFQAMV 335
Query: 337 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 396
LAPTI+LAKQH+DV++ERF+ YP+IK+ + S QSK EK+E + IK+G L+IIVGTH+L
Sbjct: 336 LAPTIILAKQHYDVMTERFANYPEIKIAIFSGAQSKEEKDELITKIKNGDLHIIVGTHAL 395
Query: 397 LGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 456
L R+VY+NLGLLVVDEEQ+FGV+QKEKIAS+K S+DVLTLSATPIPRTLYLALTGFRDA
Sbjct: 396 LTERMVYSNLGLLVVDEEQKFGVQQKEKIASYKSSIDVLTLSATPIPRTLYLALTGFRDA 455
Query: 457 SLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 516
SL+STPPPER+ +KT++SAFSKE+ +SAIK+EL RGGQVFYV+PRIK +++ + FL+ +
Sbjct: 456 SLMSTPPPERVAVKTYVSAFSKERALSAIKFELQRGGQVFYVVPRIKAIDDVLQFLKDSL 515
Query: 517 PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGL 576
P V IA+AHG++ S+ ++ ME FA G +KIL+CT+I+ESG+DI NANT+IVQ + +GL
Sbjct: 516 PDVPIAVAHGKKMSKSIQLAMEDFASGEVKILVCTHIIESGIDIANANTMIVQFAELYGL 575
Query: 577 AQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIR 636
AQLYQLRGRVGR+ +E AYLFY DKSLLS A +RL A+EE ELGQGF +AEKDMGIR
Sbjct: 576 AQLYQLRGRVGRSGREGFAYLFYTDKSLLSRVATDRLGAIEEHSELGQGFHVAEKDMGIR 635
Query: 637 GFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEY 696
GFG++FG+QQ+GDV NVG+DLFF+MLF+SLSKVD+ C++ V YK VQ+DINI+PRLPSEY
Sbjct: 636 GFGSLFGDQQSGDVANVGIDLFFDMLFDSLSKVDQFCLVPVLYKDVQLDINISPRLPSEY 695
Query: 697 INHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIG 756
I++LENP+E++NEA KAAE+D+W L+QFTE LRR+YGKEP ME+LLKKLYVRRMAAD+G
Sbjct: 696 ISYLENPVELLNEAAKAAEKDLWALIQFTEDLRRRYGKEPRDMELLLKKLYVRRMAADLG 755
Query: 757 ITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLN 816
I++IY SGK + MKTNMNKKVF++M ++MTSE HRNSL+F G +IKAELL+ LP LLN
Sbjct: 756 ISRIYPSGKTIFMKTNMNKKVFRLMTEAMTSETHRNSLSFAGKEIKAELLVSLPDTLLLN 815
Query: 817 WIFQCLAELYASLPALIKY 835
W+F CL++ Y +PAL+KY
Sbjct: 816 WLFHCLSDCYTVIPALVKY 834
>gi|414591491|tpg|DAA42062.1| TPA: hypothetical protein ZEAMMB73_244087 [Zea mays]
Length = 825
Score = 1023 bits (2645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/776 (63%), Positives = 626/776 (80%), Gaps = 21/776 (2%)
Query: 74 DDISILNERIRRDFGKRE--------ATRPVMDSEEADKYIQLVKEQQQKGLQKLKGKKS 125
DDIS LN R+R +RE ++ PV D +A+ Y++++++QQ+ GL++L+ ++
Sbjct: 57 DDISQLNYRLRAIVRRREGAAAQGATSSSPV-DPAQAEAYLRMIRDQQRLGLRQLRREEQ 115
Query: 126 GGGGAGAGA------GDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQK 179
G G G G ++VDP L G+YVVHKKVG+GKF I +
Sbjct: 116 EGEGDGDEEGPDGERARKGVAAGSSLGHRVDPRELEPGEYVVHKKVGVGKFACISAEDGA 175
Query: 180 DSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKG 239
D YVFI+YADGMAKL V QA+RMLYRYNLP+E +RPR LSKL+D + WE+R+ KG
Sbjct: 176 D------YVFIQYADGMAKLAVDQAARMLYRYNLPHEKRRPRNLSKLNDPSTWEKRRLKG 229
Query: 240 KVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTE 299
K+A+QKMVV+LMELYL R++ R PYPK ++ +FAA+FPYEPTPDQ +AF+DVE+DLTE
Sbjct: 230 KLAVQKMVVNLMELYLQRMRLGRSPYPKPASMDDFAAEFPYEPTPDQCQAFIDVEKDLTE 289
Query: 300 RETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP 359
RETPMDRLICGDVGFGKTEVA+RAIF VVSAG QAMVLAPTI+LAKQH+DV++ERF+ YP
Sbjct: 290 RETPMDRLICGDVGFGKTEVAMRAIFIVVSAGFQAMVLAPTIILAKQHYDVMTERFANYP 349
Query: 360 DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV 419
++KV + S QSK EK+E + MIK+G L+IIVGTH+LL R+VY+NLGLLVVDEEQ+FGV
Sbjct: 350 EMKVAIFSGAQSKEEKDELITMIKNGDLHIIVGTHALLTERMVYSNLGLLVVDEEQKFGV 409
Query: 420 KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKE 479
+QKEKIAS+K S+DVLTLSATPIPRTLYLALTGFRDASL+STPPPER+ +KT++SAFSKE
Sbjct: 410 QQKEKIASYKSSIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVKTYVSAFSKE 469
Query: 480 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEK 539
+ +SAIK+EL RGGQVFYV+PRIK +++ + FL+ + P V IA+AHG++ S+ ++ ME
Sbjct: 470 RALSAIKFELQRGGQVFYVVPRIKAIDDVLQFLKDSLPDVPIAVAHGKKLSKNIQLAMED 529
Query: 540 FAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY 599
F G +KIL+CT+I+ESG+DI +ANT+I+Q + +GLAQLYQLRGRVGR+ E AYLFY
Sbjct: 530 FTSGKVKILVCTHIIESGIDIAHANTMIIQFAELYGLAQLYQLRGRVGRSGTEGFAYLFY 589
Query: 600 PDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFF 659
DKSLLS A +RL A+EE ELGQGF +AEKDMGIRGFG++FGEQQ+GDV NVG+DLFF
Sbjct: 590 TDKSLLSRVATDRLGAIEEHSELGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFF 649
Query: 660 EMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIW 719
+MLF+SLSKVD+ C++ VPYK VQ+DINI+PRL SEYI++LENP+E++NEA KAAE+D+W
Sbjct: 650 DMLFDSLSKVDQFCLVPVPYKDVQLDINISPRLSSEYISYLENPVELLNEAAKAAEKDLW 709
Query: 720 CLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFK 779
L+QFTE LRR+YGKEP ME+LLKKLYVRRMAAD+GI++IY SGKM+ MKTNMNKKVF+
Sbjct: 710 TLIQFTEDLRRRYGKEPRDMELLLKKLYVRRMAADLGISRIYPSGKMIFMKTNMNKKVFR 769
Query: 780 MMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY 835
+M ++MTSE HRNSL+F +IKAELL+ LP LLNW+F CL++ Y +PAL+KY
Sbjct: 770 LMTEAMTSETHRNSLSFAEKEIKAELLVNLPDTLLLNWLFHCLSDCYTVIPALVKY 825
>gi|357156590|ref|XP_003577509.1| PREDICTED: transcription-repair-coupling factor-like [Brachypodium
distachyon]
Length = 826
Score = 1019 bits (2635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/751 (64%), Positives = 606/751 (80%), Gaps = 18/751 (2%)
Query: 97 MDSEEADKYIQLVKEQQQKGLQKLKGKKSG-----GGGAGAGAGDS-------GYNGAGG 144
MD +A+ Y+ +++EQQ+ GL++L+ +G G G + G
Sbjct: 82 MDPVQAEAYLHMIREQQRLGLRQLRRDPAGQKEERDSGVDDGDEEEEGGGRRKGMAAGSS 141
Query: 145 FSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
++VDP L G+YVVHKKVG+GKFV I + +D YVFI+YAD MAKL V QA
Sbjct: 142 LGHRVDPRELEPGEYVVHKKVGVGKFVCISGEDGED------YVFIQYADAMAKLAVDQA 195
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+RMLYRYNLP+E KRPR+LSKL+D + WE+R+ KGK+A+QKMVV+LMELYL R++Q+R P
Sbjct: 196 ARMLYRYNLPHEKKRPRSLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQRRSP 255
Query: 265 YPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
Y + AI +FAA+FPYEPTPDQ +AF+DVE+DLTERETPMDRLICGDVGFGKTEVA+RAI
Sbjct: 256 YTRPEAIDQFAAEFPYEPTPDQNQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAMRAI 315
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VVSAG QAMVLAPT++LA QH+DV+S+RFS YPDIK+ + S QSK EK+E + IK
Sbjct: 316 FIVVSAGYQAMVLAPTVILANQHYDVMSDRFSSYPDIKIAIFSGAQSKEEKDELITQIKS 375
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
GHL IIVGTH+LL R+ YNNLGLLVVDEEQ+FGV+QKEKIAS+K S+DVLTLSATPIPR
Sbjct: 376 GHLQIIVGTHALLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKSSIDVLTLSATPIPR 435
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLYLALTGFRDASL+STPPPER+ +KT++SAFS+E+ +SAIK EL RGGQVFYV+PRIK
Sbjct: 436 TLYLALTGFRDASLMSTPPPERVAVKTYVSAFSRERALSAIKLELKRGGQVFYVVPRIKA 495
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+++ + FL+ + P V +A+AHG++ S+ ++ MEKF+ G IKIL+CT+I+ESG+DI NAN
Sbjct: 496 IDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFSCGEIKILVCTHIIESGIDIPNAN 555
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+IVQ + FGLAQLYQLRGRVGR+ +E YLFY DKSLLS A++RL A+EE +LGQ
Sbjct: 556 TMIVQYAELFGLAQLYQLRGRVGRSGREGFTYLFYTDKSLLSRIAMDRLGAIEEHSDLGQ 615
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF +AEKDMGIRGFG++FGEQQ+GDV NVG+DLFF+MLF+SLSKVD+ C+ VPYK VQ+
Sbjct: 616 GFHVAEKDMGIRGFGSMFGEQQSGDVANVGIDLFFDMLFDSLSKVDQFCINPVPYKDVQL 675
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
DINI+ L SEYI++LENP+E++NEA KAAE+DIW L QFTE LRRQYGKEP ME+LLK
Sbjct: 676 DINISAHLSSEYISYLENPVELLNEAAKAAEKDIWTLTQFTEDLRRQYGKEPRDMELLLK 735
Query: 745 KLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAE 804
KLYVRRMAAD+GI +IY SGK + MKTNMNKKVF++M+++M SE HRNSLT G +IKAE
Sbjct: 736 KLYVRRMAADLGICRIYPSGKTIIMKTNMNKKVFRLMVEAMASETHRNSLTLTGKEIKAE 795
Query: 805 LLLELPREQLLNWIFQCLAELYASLPALIKY 835
LL+ LP LLNW+F CLA+ YA +PAL+KY
Sbjct: 796 LLVTLPDTLLLNWLFHCLADCYAGMPALVKY 826
>gi|108864447|gb|ABA94063.2| CarD-like transcriptional regulator family protein, expressed
[Oryza sativa Japonica Group]
Length = 803
Score = 984 bits (2544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/776 (60%), Positives = 607/776 (78%), Gaps = 49/776 (6%)
Query: 74 DDISILNERIRRDFGKREATRPV---MDSEEADKYIQLVKEQQQKGLQKLKGKKSGGGGA 130
DDI+ LN R+R +R+A+ +D +A+ Y+++++EQQ+ GL++L+G G
Sbjct: 63 DDIAQLNHRLRALVRRRDASSSAALSVDPAQAEAYLRMIREQQRMGLRQLRGDGDGAASQ 122
Query: 131 GAGAGDS----------GYNGAGG-FSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQK 179
+ G AG ++VDP L +G+YVVHKKVG+GKFV I +
Sbjct: 123 EGESDGDGDEGGGGRRKGVVAAGSSLGHRVDPRELEAGEYVVHKKVGVGKFVCIS---AE 179
Query: 180 DSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKG 239
D ++YVFI+YAD MAKL V QA+RMLYRYNLP+E +RPR LSKL+D + WE+R+ KG
Sbjct: 180 DG---LDYVFIQYADAMAKLAVDQAARMLYRYNLPHEKQRPRNLSKLNDPSTWEKRRLKG 236
Query: 240 KVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTE 299
K+A+QKMVV+LMELYL R++QKRPPYPK + +F A+FPYEPTPDQ +AF+DV++DLTE
Sbjct: 237 KLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTE 296
Query: 300 RETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP 359
RETPMDRLICGDVGFGKTEVA+RAIF V+SAG QAMVLAPT++LAKQH+DV+SERFS YP
Sbjct: 297 RETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYP 356
Query: 360 DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV 419
DIKV + S Q+K EK+E + I++G L+IIVGTH++L R+ YNNLGLLVVDEEQ+FGV
Sbjct: 357 DIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGV 416
Query: 420 KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKE 479
+QKEKIAS+K S+DVLTLSATPIPRTLYLALTGFRDASL+STPPPER+ ++T++S FSKE
Sbjct: 417 QQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKE 476
Query: 480 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEK 539
+ +SAIK+EL RGGQVFYV+PRIK +++ + FL+ + P V +A+AHG++ S+ ++ MEK
Sbjct: 477 RALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEK 536
Query: 540 FAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY 599
FA G +KIL+CT+I+ESG+DI NANT++VQ + FGLAQLYQ
Sbjct: 537 FACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQ------------------ 578
Query: 600 PDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFF 659
+RL A+EE +LGQGF +AEKDMGIRGFG++FGEQQ+GDV NVG+DLFF
Sbjct: 579 -----------DRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFF 627
Query: 660 EMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIW 719
+MLF+SLSKVD+ C+I VPYK VQ+DINI+ RL SEYI++LENP+E++NEA KAAE+D+W
Sbjct: 628 DMLFDSLSKVDQFCLIPVPYKDVQLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLW 687
Query: 720 CLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFK 779
L+QFTE LRRQYGKEP ME+LLKKLYVRRMAAD+GI++IY+SGKM+ MKTNMNKKVF+
Sbjct: 688 TLIQFTEDLRRQYGKEPRDMELLLKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKVFR 747
Query: 780 MMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY 835
+M ++M+ E HRNSL+F G +IK ELL+ LP LLNW+F CLA+ YA +PAL+KY
Sbjct: 748 LMREAMSLETHRNSLSFTGKEIKGELLVNLPDTLLLNWLFHCLADCYAVIPALVKY 803
>gi|125534627|gb|EAY81175.1| hypothetical protein OsI_36354 [Oryza sativa Indica Group]
Length = 640
Score = 959 bits (2479), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/640 (68%), Positives = 552/640 (86%)
Query: 196 MAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYL 255
MAKL V QA+RMLYRYNLP+E +RPR LSKL+D + WE+R+ KGK+A+QKMVV+LMELYL
Sbjct: 1 MAKLAVDQAARMLYRYNLPHEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYL 60
Query: 256 HRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFG 315
R++QKRPPYPK + +F A+FPYEPTPDQ +AF+DV++DLTERETPMDRLICGDVGFG
Sbjct: 61 QRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFG 120
Query: 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 375
KTEVA+RAIF V+SAG QAMVLAPT++LAKQH+DV+SERFS YPDIKV + S Q+K EK
Sbjct: 121 KTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEK 180
Query: 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVL 435
+E + I++G L+IIVGTH++L R+ YNNLGLLVVDEEQ+FGV+QKEKIAS+K S+DVL
Sbjct: 181 DELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVL 240
Query: 436 TLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQV 495
TLSATPIPRTLYLALTGFRDASL+STPPPER+ ++T++S FSKE+ +SAIK+EL RGGQV
Sbjct: 241 TLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQV 300
Query: 496 FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555
FYV+PRIK +++ + FL+ + P V +A+AHG++ S+ ++ MEKFA G +KIL+CT+I+E
Sbjct: 301 FYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCTHIIE 360
Query: 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA 615
SG+DI NANT++VQ + FGLAQLYQLRGRVGR+ E AYLFY DKSLLS A +RL A
Sbjct: 361 SGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATDRLGA 420
Query: 616 LEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVI 675
+EE +LGQGF +AEKDMGIRGFG++FGEQQ+GDV NVG+DLFF+MLF+SLSKVD+ C+I
Sbjct: 421 IEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFFDMLFDSLSKVDQFCLI 480
Query: 676 SVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKE 735
VPYK VQ+DINI+ RL SEYI++LENP+E++NEA KAAE+D+W L+QFTE LRRQYGKE
Sbjct: 481 PVPYKDVQLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLWTLIQFTEDLRRQYGKE 540
Query: 736 PYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLT 795
P ME+LLKKLYVRRMAAD+GI++IY+SGKM+ MKTNMNKKVF++M ++M+ E HRNSL+
Sbjct: 541 PRDMELLLKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKVFRLMREAMSLETHRNSLS 600
Query: 796 FEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY 835
F G +IK ELL+ LP LLNW+F CLA+ YA +PAL+KY
Sbjct: 601 FTGKEIKGELLVNLPDTLLLNWLFHCLADCYAVIPALVKY 640
>gi|297611935|ref|NP_001068018.2| Os11g0533100 [Oryza sativa Japonica Group]
gi|255680143|dbj|BAF28381.2| Os11g0533100, partial [Oryza sativa Japonica Group]
Length = 823
Score = 926 bits (2393), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/622 (68%), Positives = 536/622 (86%)
Query: 214 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE 273
P+E +RPR LSKL+D + WE+R+ KGK+A+QKMVV+LMELYL R++QKRPPYPK + +
Sbjct: 202 PHEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQ 261
Query: 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 333
F A+FPYEPTPDQ +AF+DV++DLTERETPMDRLICGDVGFGKTEVA+RAIF V+SAG Q
Sbjct: 262 FTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQ 321
Query: 334 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 393
AMVLAPT++LAKQH+DV+SERFS YPDIKV + S Q+K EK+E + I++G L+IIVGT
Sbjct: 322 AMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGT 381
Query: 394 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 453
H++L R+ YNNLGLLVVDEEQ+FGV+QKEKIAS+K S+DVLTLSATPIPRTLYLALTGF
Sbjct: 382 HAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGF 441
Query: 454 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 513
RDASL+STPPPER+ ++T++S FSKE+ +SAIK+EL RGGQVFYV+PRIK +++ + FL+
Sbjct: 442 RDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLK 501
Query: 514 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 573
+ P V +A+AHG++ S+ ++ MEKFA G +KIL+CT+I+ESG+DI NANT++VQ +
Sbjct: 502 DSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAEL 561
Query: 574 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 633
FGLAQLYQLRGRVGR+ E AYLFY DKSLLS A +RL A+EE +LGQGF +AEKDM
Sbjct: 562 FGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDM 621
Query: 634 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 693
GIRGFG++FGEQQ+GDV NVG+DLFF+MLF+SLSKVD+ C+I VPYK VQ+DINI+ RL
Sbjct: 622 GIRGFGSLFGEQQSGDVANVGIDLFFDMLFDSLSKVDQFCLIPVPYKDVQLDINISSRLS 681
Query: 694 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 753
SEYI++LENP+E++NEA KAAE+D+W L+QFTE LRRQYGKEP ME+LLKKLYVRRMAA
Sbjct: 682 SEYISYLENPVELLNEAAKAAEKDLWTLIQFTEDLRRQYGKEPRDMELLLKKLYVRRMAA 741
Query: 754 DIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQ 813
D+GI++IY+SGKM+ MKTNMNKKVF++M ++M+ E HRNSL+F G +IK ELL+ LP
Sbjct: 742 DLGISRIYSSGKMIIMKTNMNKKVFRLMREAMSLETHRNSLSFTGKEIKGELLVNLPDTL 801
Query: 814 LLNWIFQCLAELYASLPALIKY 835
LLNW+F CLA+ YA +PAL+KY
Sbjct: 802 LLNWLFHCLADCYAVIPALVKY 823
>gi|87241294|gb|ABD33152.1| Helicase, C-terminal; Haem peroxidase, plant/fungal/bacterial
[Medicago truncatula]
Length = 494
Score = 899 bits (2323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/491 (86%), Positives = 470/491 (95%)
Query: 180 DSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKG 239
+S P EYVFIEYADGMAKLPVKQAS+MLYRY+LPNE K+PR LSKL+DT+AWE+RKTKG
Sbjct: 1 NSIEPTEYVFIEYADGMAKLPVKQASKMLYRYSLPNENKKPRALSKLNDTSAWEKRKTKG 60
Query: 240 KVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTE 299
KVAIQKMVVDLMELYLHRLKQ+RPPYP +P +AEFAA+FPYEPTPDQK+AF+DVE+DLTE
Sbjct: 61 KVAIQKMVVDLMELYLHRLKQRRPPYPMSPVVAEFAAKFPYEPTPDQKQAFIDVEKDLTE 120
Query: 300 RETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP 359
RETPMDRLICGDVGFGKTEVA+RAI CVV+A KQAMVLAPTIVLAKQHFDV+SERFS YP
Sbjct: 121 RETPMDRLICGDVGFGKTEVAMRAIHCVVAAKKQAMVLAPTIVLAKQHFDVISERFSVYP 180
Query: 360 DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV 419
DIKVGLLSRFQ+++EKE +L+MIK+G L+IIVGTHSLLG+RVVYNNLGLLVVDEEQRFGV
Sbjct: 181 DIKVGLLSRFQTRSEKEAYLEMIKNGDLDIIVGTHSLLGNRVVYNNLGLLVVDEEQRFGV 240
Query: 420 KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKE 479
KQKE+IASFK SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER+PIKT LS+FSK+
Sbjct: 241 KQKERIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTQLSSFSKD 300
Query: 480 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEK 539
KVISAIKYELDR GQVFYVLPRIKGLEE M+FL++AFP V+IA+AHG+Q+S+QLE+TMEK
Sbjct: 301 KVISAIKYELDRSGQVFYVLPRIKGLEEAMEFLEEAFPDVEIAVAHGKQFSKQLEDTMEK 360
Query: 540 FAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY 599
F G IKILI TNIVESGLDIQNANTII+QDVQQFGLAQLYQLRGRVGRADKEA+AYLFY
Sbjct: 361 FTLGEIKILISTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAYAYLFY 420
Query: 600 PDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFF 659
PDKSLL+DQALERLAALEECRELGQGFQLAE+DMGIRGFGTIFGEQQTGDVGNVG+DLFF
Sbjct: 421 PDKSLLTDQALERLAALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFF 480
Query: 660 EMLFESLSKVD 670
EMLFESLSKV+
Sbjct: 481 EMLFESLSKVN 491
>gi|108864445|gb|ABG22504.1| CarD-like transcriptional regulator family protein, expressed
[Oryza sativa Japonica Group]
gi|215767702|dbj|BAG99930.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 590
Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/590 (68%), Positives = 509/590 (86%)
Query: 246 MVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMD 305
MVV+LMELYL R++QKRPPYPK + +F A+FPYEPTPDQ +AF+DV++DLTERETPMD
Sbjct: 1 MVVNLMELYLQRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMD 60
Query: 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGL 365
RLICGDVGFGKTEVA+RAIF V+SAG QAMVLAPT++LAKQH+DV+SERFS YPDIKV +
Sbjct: 61 RLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAM 120
Query: 366 LSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKI 425
S Q+K EK+E + I++G L+IIVGTH++L R+ YNNLGLLVVDEEQ+FGV+QKEKI
Sbjct: 121 FSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKI 180
Query: 426 ASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAI 485
AS+K S+DVLTLSATPIPRTLYLALTGFRDASL+STPPPER+ ++T++S FSKE+ +SAI
Sbjct: 181 ASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSAI 240
Query: 486 KYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAI 545
K+EL RGGQVFYV+PRIK +++ + FL+ + P V +A+AHG++ S+ ++ MEKFA G +
Sbjct: 241 KFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEV 300
Query: 546 KILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLL 605
KIL+CT+I+ESG+DI NANT++VQ + FGLAQLYQLRGRVGR+ E AYLFY DKSLL
Sbjct: 301 KILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLL 360
Query: 606 SDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFES 665
S A +RL A+EE +LGQGF +AEKDMGIRGFG++FGEQQ+GDV NVG+DLFF+MLF+S
Sbjct: 361 SKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFFDMLFDS 420
Query: 666 LSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFT 725
LSKVD+ C+I VPYK VQ+DINI+ RL SEYI++LENP+E++NEA KAAE+D+W L+QFT
Sbjct: 421 LSKVDQFCLIPVPYKDVQLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLWTLIQFT 480
Query: 726 ESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSM 785
E LRRQYGKEP ME+LLKKLYVRRMAAD+GI++IY+SGKM+ MKTNMNKKVF++M ++M
Sbjct: 481 EDLRRQYGKEPRDMELLLKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKVFRLMREAM 540
Query: 786 TSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY 835
+ E HRNSL+F G +IK ELL+ LP LLNW+F CLA+ YA +PAL+KY
Sbjct: 541 SLETHRNSLSFTGKEIKGELLVNLPDTLLLNWLFHCLADCYAVIPALVKY 590
>gi|357508485|ref|XP_003624531.1| Transcription-repair-coupling factor [Medicago truncatula]
gi|355499546|gb|AES80749.1| Transcription-repair-coupling factor [Medicago truncatula]
Length = 503
Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/477 (86%), Positives = 457/477 (95%)
Query: 196 MAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYL 255
MAKLPVKQAS+MLYRY+LPNE K+PR LSKL+DT+AWE+RKTKGKVAIQKMVVDLMELYL
Sbjct: 1 MAKLPVKQASKMLYRYSLPNENKKPRALSKLNDTSAWEKRKTKGKVAIQKMVVDLMELYL 60
Query: 256 HRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFG 315
HRLKQ+RPPYP +P +AEFAA+FPYEPTPDQK+AF+DVE+DLTERETPMDRLICGDVGFG
Sbjct: 61 HRLKQRRPPYPMSPVVAEFAAKFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFG 120
Query: 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 375
KTEVA+RAI CVV+A KQAMVLAPTIVLAKQHFDV+SERFS YPDIKVGLLSRFQ+++EK
Sbjct: 121 KTEVAMRAIHCVVAAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRFQTRSEK 180
Query: 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVL 435
E +L+MIK+G L+IIVGTHSLLG+RVVYNNLGLLVVDEEQRFGVKQKE+IASFK SVDVL
Sbjct: 181 EAYLEMIKNGDLDIIVGTHSLLGNRVVYNNLGLLVVDEEQRFGVKQKERIASFKTSVDVL 240
Query: 436 TLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQV 495
TLSATPIPRTLYLALTGFRDASLISTPPPER+PIKT LS+FSK+KVISAIKYELDR GQV
Sbjct: 241 TLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTQLSSFSKDKVISAIKYELDRSGQV 300
Query: 496 FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555
FYVLPRIKGLEE M+FL++AFP V+IA+AHG+Q+S+QLE+TMEKF G IKILI TNIVE
Sbjct: 301 FYVLPRIKGLEEAMEFLEEAFPDVEIAVAHGKQFSKQLEDTMEKFTLGEIKILISTNIVE 360
Query: 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA 615
SGLDIQNANTII+QDVQQFGLAQLYQLRGRVGRADKEA+AYLFYPDKSLL+DQALERLAA
Sbjct: 361 SGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAYAYLFYPDKSLLTDQALERLAA 420
Query: 616 LEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEH 672
LEECRELGQGFQLAE+DMGIRGFGTIFGEQQTGDVGNVG+DLFFEMLFESLSK +H
Sbjct: 421 LEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKSPKH 477
>gi|168021077|ref|XP_001763068.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685551|gb|EDQ71945.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 792
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/759 (56%), Positives = 561/759 (73%), Gaps = 16/759 (2%)
Query: 80 NERIRRDFGKREATRPVMDSEEADKYIQLVKEQQQKGLQKLKG--KKSGGGGAGAGAGDS 137
NE +R G + +P +D A K + ++EQ++ G+Q + K+ G G A G
Sbjct: 46 NESVRS--GGNASDKP-LDGVAAKKMKERLQEQRRHGMQAISNMMKQRGQGVAVDGEA-- 100
Query: 138 GYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMA 197
FSY VDP +L G+YVVHK+VG+G F+GIK++V T P +Y++++YADG+A
Sbjct: 101 -------FSYAVDPDTLSPGEYVVHKRVGVGCFIGIKYEVPAGKTKPAKYIYLKYADGVA 153
Query: 198 KLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR 257
KL KQASR+LYRY P + R LSKL+D WE+R +KGK+AIQK+VV++MELY+HR
Sbjct: 154 KLRAKQASRLLYRYFSPGDVGRAPVLSKLNDPGNWEKRVSKGKLAIQKLVVNMMELYIHR 213
Query: 258 LKQKRPPYPKNPAIAE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGK 316
LKQ RP YPKN + + FAA+FPY+ T DQ +A DVERD+TERETPMDRLICGDVGFGK
Sbjct: 214 LKQTRPVYPKNSKLMDSFAAKFPYKETSDQVQAIADVERDMTERETPMDRLICGDVGFGK 273
Query: 317 TEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKE 376
TEVALRA+F SAG+QAM+LAPT VLAKQH+DV+ +RF+ Y D+KV LLSRFQ EK+
Sbjct: 274 TEVALRALFLAASAGRQAMLLAPTTVLAKQHYDVIRQRFAGY-DMKVALLSRFQKDGEKK 332
Query: 377 EHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLT 436
E + I G L+I+VGTHSLLG++V Y+NLGLLVVDEEQRFGV+QKE+I S K SVDVLT
Sbjct: 333 EVIAGISDGSLSIVVGTHSLLGNQVRYHNLGLLVVDEEQRFGVRQKERITSMKTSVDVLT 392
Query: 437 LSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVF 496
LSATPIPRTLYLAL+GFRDASLI+TPP ER PI THL F+ E V AI +EL RGGQVF
Sbjct: 393 LSATPIPRTLYLALSGFRDASLITTPPAERRPITTHLMEFNPEAVKKAIDFELKRGGQVF 452
Query: 497 YVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556
YV+PR+KG+EE L+ FP V I +AHGQQ + LEE+ME+F++G IL+CT+IVES
Sbjct: 453 YVVPRVKGMEESKAILESYFPDVGIGVAHGQQSATVLEESMEQFSEGTYLILLCTSIVES 512
Query: 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAAL 616
GLDI+ NTII++DVQ FGLAQLYQLRGRVGR+D+EAHAY+F+P K LSD ALERL AL
Sbjct: 513 GLDIRRVNTIIIEDVQLFGLAQLYQLRGRVGRSDREAHAYMFHPSKENLSDDALERLVAL 572
Query: 617 EECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS 676
E+C LGQGFQLAE+DM IRG G++FGE+Q+GDV +GVDL+ EMLFE LS VD +
Sbjct: 573 EDCCGLGQGFQLAERDMAIRGIGSVFGEKQSGDVAKIGVDLYLEMLFEGLSNVDLQKLPE 632
Query: 677 VPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEP 736
V ++ VQ+D+ ++ +P +Y+ +++ +AEKAA + LMQFT LR +YG EP
Sbjct: 633 VTFEEVQLDLAVSTHIPGDYVTSAALRDKVLRDAEKAANNGMNALMQFTNRLRNEYGPEP 692
Query: 737 YSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTF 796
++E+LLK LYV+R+AAD+GI +I GK V M T M + ++M+ ++T+ ++SLT+
Sbjct: 693 PTVEMLLKTLYVKRLAADLGIHRIRTRGKTVVMDTKMEPEAYEMLSSAITTASVQDSLTY 752
Query: 797 EGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY 835
E +I+ + L+ LP E+ L +F CLAE+ LP+ +KY
Sbjct: 753 ESGRIEMKGLIGLPVERQLERVFVCLAEMRNGLPSFVKY 791
>gi|414591492|tpg|DAA42063.1| TPA: hypothetical protein ZEAMMB73_244087 [Zea mays]
Length = 692
Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/629 (61%), Positives = 499/629 (79%), Gaps = 21/629 (3%)
Query: 74 DDISILNERIRRDFGKRE--------ATRPVMDSEEADKYIQLVKEQQQKGLQKLKGKKS 125
DDIS LN R+R +RE ++ PV D +A+ Y++++++QQ+ GL++L+ ++
Sbjct: 57 DDISQLNYRLRAIVRRREGAAAQGATSSSPV-DPAQAEAYLRMIRDQQRLGLRQLRREEQ 115
Query: 126 GGGGAGAGA------GDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQK 179
G G G G ++VDP L G+YVVHKKVG+GKF I +
Sbjct: 116 EGEGDGDEEGPDGERARKGVAAGSSLGHRVDPRELEPGEYVVHKKVGVGKFACISAEDGA 175
Query: 180 DSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKG 239
D YVFI+YADGMAKL V QA+RMLYRYNLP+E +RPR LSKL+D + WE+R+ KG
Sbjct: 176 D------YVFIQYADGMAKLAVDQAARMLYRYNLPHEKRRPRNLSKLNDPSTWEKRRLKG 229
Query: 240 KVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTE 299
K+A+QKMVV+LMELYL R++ R PYPK ++ +FAA+FPYEPTPDQ +AF+DVE+DLTE
Sbjct: 230 KLAVQKMVVNLMELYLQRMRLGRSPYPKPASMDDFAAEFPYEPTPDQCQAFIDVEKDLTE 289
Query: 300 RETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP 359
RETPMDRLICGDVGFGKTEVA+RAIF VVSAG QAMVLAPTI+LAKQH+DV++ERF+ YP
Sbjct: 290 RETPMDRLICGDVGFGKTEVAMRAIFIVVSAGFQAMVLAPTIILAKQHYDVMTERFANYP 349
Query: 360 DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV 419
++KV + S QSK EK+E + MIK+G L+IIVGTH+LL R+VY+NLGLLVVDEEQ+FGV
Sbjct: 350 EMKVAIFSGAQSKEEKDELITMIKNGDLHIIVGTHALLTERMVYSNLGLLVVDEEQKFGV 409
Query: 420 KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKE 479
+QKEKIAS+K S+DVLTLSATPIPRTLYLALTGFRDASL+STPPPER+ +KT++SAFSKE
Sbjct: 410 QQKEKIASYKSSIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVKTYVSAFSKE 469
Query: 480 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEK 539
+ +SAIK+EL RGGQVFYV+PRIK +++ + FL+ + P V IA+AHG++ S+ ++ ME
Sbjct: 470 RALSAIKFELQRGGQVFYVVPRIKAIDDVLQFLKDSLPDVPIAVAHGKKLSKNIQLAMED 529
Query: 540 FAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY 599
F G +KIL+CT+I+ESG+DI +ANT+I+Q + +GLAQLYQLRGRVGR+ E AYLFY
Sbjct: 530 FTSGKVKILVCTHIIESGIDIAHANTMIIQFAELYGLAQLYQLRGRVGRSGTEGFAYLFY 589
Query: 600 PDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFF 659
DKSLLS A +RL A+EE ELGQGF +AEKDMGIRGFG++FGEQQ+GDV NVG+DLFF
Sbjct: 590 TDKSLLSRVATDRLGAIEEHSELGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFF 649
Query: 660 EMLFESLSKVDEHCVISVPYKSVQIDINI 688
+MLF+SLSKVD+ C++ VPYK VQ+++ I
Sbjct: 650 DMLFDSLSKVDQFCLVPVPYKDVQVNLKI 678
>gi|302763495|ref|XP_002965169.1| hypothetical protein SELMODRAFT_83786 [Selaginella moellendorffii]
gi|300167402|gb|EFJ34007.1| hypothetical protein SELMODRAFT_83786 [Selaginella moellendorffii]
Length = 693
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/699 (56%), Positives = 516/699 (73%), Gaps = 15/699 (2%)
Query: 145 FSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
SY VDP L SG+Y+VHKKVGIG+FV +K +V + P +YV++ YADGMAKLP KQA
Sbjct: 1 MSYNVDPEKLISGEYIVHKKVGIGQFVSLKEEVPEGGKSPQKYVYLRYADGMAKLPAKQA 60
Query: 205 SRMLYRYNLPNET-KRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
R+LYRY P E+ KR LSKL+D + WE+R+T+G + Q+ VV ++++Y+ RLKQKRP
Sbjct: 61 RRLLYRYFRPGESVKRYPALSKLNDRSQWEKRRTEGSLDAQRRVVKMIDVYIRRLKQKRP 120
Query: 264 PYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
Y K+ PA+++FA +FPY PTPDQ KAFLDVERDLT+ ETPMDRLICGDVGFGKTEVA+R
Sbjct: 121 VYSKDVPAMSKFAGKFPYTPTPDQIKAFLDVERDLTDAETPMDRLICGDVGFGKTEVAMR 180
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
AIF VSA KQ MVLAPT VLAKQH + + ERF+ +PDIKV LLSRFQ+ ++ + I
Sbjct: 181 AIFYAVSAKKQVMVLAPTTVLAKQHHESIKERFANFPDIKVALLSRFQNNVDRRAVIAGI 240
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
G +NI VGTHSLLG+ + Y N+GLLVVDEEQRFGV QKEKI++ K +VD+LTLSATPI
Sbjct: 241 NDGVVNIAVGTHSLLGNNIQYENVGLLVVDEEQRFGVAQKEKISTLKTTVDILTLSATPI 300
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++AL+GFRDASL++TPPPER PIKTH+ +S++ V AIK ELDR GQVFYV+PRI
Sbjct: 301 PRTLHMALSGFRDASLMTTPPPERRPIKTHVCVYSQDMVKDAIKAELDRRGQVFYVVPRI 360
Query: 503 KG-LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
+G +E L+ PGV ++IAHG++ + +LE TM KF + IL+CTNI+ESGLDI
Sbjct: 361 QGNMESTEKKLKLLVPGVQVSIAHGKKCATELEATMTKFTEKGTSILLCTNIIESGLDIP 420
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NTIIV++VQ FGLAQ+YQLRGRVGRADK AHAY+ +P K LS ALERL+ALE+C
Sbjct: 421 TVNTIIVENVQMFGLAQIYQLRGRVGRADKVAHAYMLHPPKDFLSSDALERLSALEDCCA 480
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDE---HCVISVP 678
LGQGFQLAE+DM IRG G+IFGE+Q+G+ VGVDL+ EMLFE++SKV+ H + +
Sbjct: 481 LGQGFQLAERDMAIRGIGSIFGEKQSGEFSKVGVDLYAEMLFEAISKVNSAQYHSLPQLE 540
Query: 679 YKSVQIDININPRLPSEYINHLENPM--EMVNEAEKAAEQDIWCLMQFTESLRRQYGKEP 736
Y+ VQ+ ++ +I+ L + + + AE+AA++ I L++FTE LR + GKEP
Sbjct: 541 YEDVQVKRHM-------WISILSSMQWEAVTDSAEEAAKKGIKDLVRFTEKLRSERGKEP 593
Query: 737 YSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTF 796
+E LLK +Y +RMAAD+GI I GK + M TNMN F+++ SM S ++SL+F
Sbjct: 594 PPLEALLKTIYAKRMAADLGIHHIQTRGKQITMLTNMNADAFQVLHCSMASPPLKSSLSF 653
Query: 797 EGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY 835
+++ L+ELP E L +FQCLAEL L + + Y
Sbjct: 654 SNGRLELHSLVELPSEFQLERLFQCLAELRRGLASFLTY 692
>gi|302757661|ref|XP_002962254.1| hypothetical protein SELMODRAFT_77276 [Selaginella moellendorffii]
gi|300170913|gb|EFJ37514.1| hypothetical protein SELMODRAFT_77276 [Selaginella moellendorffii]
Length = 704
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/710 (55%), Positives = 517/710 (72%), Gaps = 26/710 (3%)
Query: 145 FSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
SY VDP L SG+Y+VHKKVGIG+FV +K +V + P +YV++ YADGMAKLP KQA
Sbjct: 1 MSYNVDPEKLISGEYIVHKKVGIGQFVSLKEEVPEGGKSPQKYVYLRYADGMAKLPAKQA 60
Query: 205 SRMLYRY-----------NLPNET-KRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLME 252
R+LYRY + P E+ KR LSKL+D + WE+R+T+G + Q+ VV +++
Sbjct: 61 RRLLYRYFRHSSFFFVFFSSPGESVKRYPALSKLNDRSQWEKRRTEGSLDAQRRVVKMID 120
Query: 253 LYLHRLKQKRPPYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGD 311
+Y+ RLKQKRP Y K+ PA+++FA +FPY PTPDQ KAFLDVERDLT+ ETPMDRLICGD
Sbjct: 121 VYIRRLKQKRPVYSKDVPAMSKFAGKFPYTPTPDQIKAFLDVERDLTDAETPMDRLICGD 180
Query: 312 VGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQS 371
VGFGKTEVA+RAIF VSA KQ MVLAPT VLAKQH + + ERF+ +PDIKV LLSRFQ+
Sbjct: 181 VGFGKTEVAMRAIFYAVSAKKQVMVLAPTTVLAKQHHESIKERFANFPDIKVALLSRFQN 240
Query: 372 KAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKIS 431
++ + I G +NI VGTHSLLG+ + Y +GLLVVDEEQRFGV QKEKI++ K +
Sbjct: 241 NVDRRAVIAGINDGVVNIAVGTHSLLGNNIQYEKVGLLVVDEEQRFGVAQKEKISTLKTT 300
Query: 432 VDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDR 491
VD+LTLSATPIPRTL++AL+GFRDASL++TPPPER PIKTH+ +S++ V AIK ELDR
Sbjct: 301 VDILTLSATPIPRTLHMALSGFRDASLMTTPPPERRPIKTHVCVYSQDMVKDAIKAELDR 360
Query: 492 GGQVFYVLPRIKG-LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILIC 550
GQVFYV+PRI+G +E L+ PGV ++IAHG++ + +LE TM KF + IL+C
Sbjct: 361 QGQVFYVVPRIQGNMESTEKKLKLLVPGVQVSIAHGKKCATELEATMTKFTEKGTSILLC 420
Query: 551 TNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQAL 610
TNI+ESGLDI NTIIV++VQ FGLAQ+YQLRGRVGRADK AHAY+ +P K LS AL
Sbjct: 421 TNIIESGLDIPTVNTIIVENVQMFGLAQIYQLRGRVGRADKVAHAYMLHPPKDFLSSDAL 480
Query: 611 ERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD 670
ERL+ALE+C LGQGFQLAE+DM IRG G+IFGE+Q+G+ VGVDL+ EMLFE++SKV+
Sbjct: 481 ERLSALEDCCALGQGFQLAERDMAIRGIGSIFGEKQSGEFSKVGVDLYAEMLFEAISKVN 540
Query: 671 E---HCVISVPYKSVQIDININPRLPSEYINHLENPM--EMVNEAEKAAEQDIWCLMQFT 725
H + + Y+ VQ+ ++ +I+ L + + + AE+AA++ I L++FT
Sbjct: 541 SAQYHSLPQLEYEDVQVKRHM-------WISILSSMQWEAVTDSAEEAAKKGIKDLVRFT 593
Query: 726 ESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSM 785
E+LR + GKEP +E LLK +Y +RMAAD+GI I GK + M TNMN F+++ SM
Sbjct: 594 ENLRSERGKEPPPLEALLKTIYAKRMAADLGIHHIQTRGKQITMLTNMNADAFQVLHCSM 653
Query: 786 TSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY 835
S ++SL+F +++ L+ELP E L +FQCLAEL L + + Y
Sbjct: 654 ASPPLKSSLSFSNGRLELHSLVELPSEFQLERLFQCLAELRRGLASFLTY 703
>gi|411116994|ref|ZP_11389481.1| transcription-repair coupling factor Mfd [Oscillatoriales
cyanobacterium JSC-12]
gi|410713097|gb|EKQ70598.1| transcription-repair coupling factor Mfd [Oscillatoriales
cyanobacterium JSC-12]
Length = 1175
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 317/693 (45%), Positives = 456/693 (65%), Gaps = 23/693 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S ++DP L GDYVVH+ GIGKF+ ++ + +++ EY+ I+YADG+ ++ Q
Sbjct: 496 SKQIDPNKLEPGDYVVHRNHGIGKFIKLESLTINRETR---EYLVIQYADGLLRVAADQL 552
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ L R+ E P L+K+S AWE+ K+K + AI+K+ VDL++LY R +Q
Sbjct: 553 N-ALSRFRGVGEA--PPELNKMSGK-AWEKTKSKVRKAIKKVAVDLLQLYAQRAQQIGFS 608
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+P++ P E FPY+PTPDQ KA DV+ D+ + + PMDRLICGDVGFGKTEVA+RA
Sbjct: 609 FPEDAPWQQEMEDSFPYQPTPDQLKATQDVKLDM-QSDRPMDRLICGDVGFGKTEVAIRA 667
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF V+AGKQ +LAPT +L +QH+ + ERF+ YP I+VGLL+RF++ E++E L +K
Sbjct: 668 IFKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-IQVGLLNRFRTAPERKEILQRMK 726
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+++VGTH LLG V + +LGLLVVDEEQRFGV QKEKI S + VDVLTLSATPIP
Sbjct: 727 TGELDVVVGTHQLLGKGVEFRDLGLLVVDEEQRFGVNQKEKIKSLRTQVDVLTLSATPIP 786
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY+AL+G R+ SLI+TPPP R PIKTHL+ + E V SAI+ ELDRGGQVFYV+PR++
Sbjct: 787 RTLYMALSGVREMSLITTPPPSRRPIKTHLAPYDPEVVRSAIRQELDRGGQVFYVVPRVE 846
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE L++ PGV IAIAHGQ +LE TM F++G +IL+CT I+ESGLDI
Sbjct: 847 GIEEVSARLREMVPGVRIAIAHGQMPEGELESTMLTFSEGEAEILVCTTIIESGLDIPRV 906
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D +FGL+QLYQLRGRVGR+ +AHA+LFYP + L+D A +RL A++E +LG
Sbjct: 907 NTILIEDANRFGLSQLYQLRGRVGRSGIQAHAWLFYPKDAQLTDTARQRLRAIQEFAQLG 966
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + VG DL+ EML E++S++ + V Q
Sbjct: 967 SGYQLAMRDMEIRGVGNLLGAEQSGQMEAVGFDLYVEMLEEAISEIRGQEIPKV--DDTQ 1024
Query: 684 IDININPRLPSEYINHLENPME---MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
ID+N+ +P++YI L+ M + A AE L Q L +YG P + +
Sbjct: 1025 IDLNLTAFIPADYIPDLDQKMSAYRAIATANSKAE-----LTQIAADLSDRYGPIPAATQ 1079
Query: 741 ILLKKLYVRRMAADIGITKIYASG-KMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGD 799
LL+ + ++++ +G ++I G + V ++T M + + ++ ++ +H + F
Sbjct: 1080 QLLRIVELKQIGKKLGFSRIKPDGTQHVALETPMEEPAWNLLKANLPEHLH-SRFVFTPG 1138
Query: 800 QIKAELLLELPREQLLNWIFQCLAELYASLPAL 832
++ L L +Q L+ + L ++ +LP L
Sbjct: 1139 KVTVRGLGVLSADQQLDNLINWLGKMQGALPEL 1171
>gi|428309816|ref|YP_007120793.1| transcription-repair coupling factor Mfd [Microcoleus sp. PCC 7113]
gi|428251428|gb|AFZ17387.1| transcription-repair coupling factor Mfd [Microcoleus sp. PCC 7113]
Length = 1166
Score = 587 bits (1512), Expect = e-164, Method: Compositional matrix adjust.
Identities = 312/687 (45%), Positives = 445/687 (64%), Gaps = 15/687 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP L+ GDYVVHK GIGKF+ ++ T EY+ I+YADG+ ++ Q
Sbjct: 488 SKQVDPNKLQQGDYVVHKNHGIGKFLKLESLTLNYETR--EYLVIQYADGLLRVAADQLG 545
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
+L R+ E RP L+K+S AWE+ K + + I+K+ VDL++LY R +++ Y
Sbjct: 546 -VLSRFRATGE--RPPELNKMSGK-AWEKTKNRVRKGIKKLAVDLLQLYAQRSQRQGFSY 601
Query: 266 P-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P +P E FPY+PTPDQ KA DV+RD+ + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 602 PLDSPWQEELEDSFPYQPTPDQLKAVQDVKRDMMS-DRPMDRLVCGDVGFGKTEVAIRAI 660
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+AGKQ LAPT +L +QH+ + ERF+ YP I VGLL+RF++ E++E +
Sbjct: 661 FKAVTAGKQVAFLAPTTILTQQHYHTIKERFAPYP-IHVGLLNRFRTAEERKEIQKRLAT 719
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+++VGTH LLG V + +LGLLV+DEEQRFGV QKEKI S K VDVLTLSATPIPR
Sbjct: 720 GELDVVVGTHQLLGKGVTFRDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 779
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PIKTHLS + E + +AI+ ELDRGGQ+FYV+PRI+G
Sbjct: 780 TLYMSLSGVREMSLITTPPPSRRPIKTHLSPYDPEAMRTAIRTELDRGGQIFYVVPRIEG 839
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ PG +AIAHGQ +LE TM F G +L+CT I+ESGLDI N
Sbjct: 840 IEEVGTQLREMIPGCRLAIAHGQMNDAELEATMLAFGNGEADVLVCTTIIESGLDIPRVN 899
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D +FGLAQLYQLRGRVGRA +AHA+LFYP + +LS+QA +RL A++E +LG
Sbjct: 900 TILIEDAHKFGLAQLYQLRGRVGRAGIQAHAWLFYPKQKVLSEQARQRLRAIQEFTQLGS 959
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V QI
Sbjct: 960 GYQLATRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQEAIKEIQGQEIPKV--DDTQI 1017
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+N+ +P++YI L+ M A +D L+Q +YG P + LL+
Sbjct: 1018 DLNLTAFIPADYIPDLDQKMSAYRAVASAESKD--ELVQIAADWSDRYGPIPTAANQLLR 1075
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
+ ++++A +G ++I GK V ++T M + + ++ + + + R+ L + ++
Sbjct: 1076 VVELKQIAKSLGFSRIKPEGKQHVILETPMEEPAWNLLKEKLPEHL-RSRLVYTPGKVTV 1134
Query: 804 ELLLELPREQLLNWIFQCLAELYASLP 830
L L +Q L + L+++ +LP
Sbjct: 1135 RGLAVLKADQQLENLINFLSKMQGALP 1161
>gi|434399533|ref|YP_007133537.1| transcription-repair coupling factor [Stanieria cyanosphaera PCC
7437]
gi|428270630|gb|AFZ36571.1| transcription-repair coupling factor [Stanieria cyanosphaera PCC
7437]
Length = 1172
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 307/639 (48%), Positives = 426/639 (66%), Gaps = 19/639 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VD L GD+VVHK GIGKF+ ++ + + EYV I+YADG+ ++P
Sbjct: 497 SKQVDLNKLNPGDFVVHKHHGIGKFINLETILHR------EYVTIQYADGLLRIPTDSLD 550
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
++ R+ RP L+K++D W R K + + ++K+ VDL++LY R K Y
Sbjct: 551 -LISRFR--QVGNRPPVLNKMADK-GWTRTKNQVRKTVKKLAVDLLKLYAKRAKLTGHAY 606
Query: 266 P-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P NP E FPY+PTPDQ KA DV+ DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 607 PGDNPWQQELEDSFPYQPTPDQLKAIQDVKLDL-ESDRPMDRLVCGDVGFGKTEVAIRAI 665
Query: 325 FCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F VV++G KQ LAPT +L +QH+ + ERF+ YP I +GLL+RF++ +EK+E + +
Sbjct: 666 FKVVTSGHKQVAFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTNSEKKEIMQRLA 724
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+++VGTH LL V + NLGLLV+DEEQRFGV QKEKI FK VDVLTLSATPIP
Sbjct: 725 TGELDVVVGTHQLLSKEVSFKNLGLLVIDEEQRFGVNQKEKIKEFKTLVDVLTLSATPIP 784
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHLS ++ E V +AI+ ELDRGGQ+FYV+PR++
Sbjct: 785 RTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNPEVVRTAIRNELDRGGQIFYVVPRVE 844
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE +++ PG+ IAIAHGQ +LE TM F+ G IL+CT I+ESGLDI
Sbjct: 845 GIEEVAAQIREMIPGIRIAIAHGQMPESELESTMITFSNGEADILVCTTIIESGLDIPRV 904
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTIIV+D Q+FGL+QLYQLRGRVGRA +AHA+L YP+K LSD A +RL AL+E +LG
Sbjct: 905 NTIIVEDSQKFGLSQLYQLRGRVGRAGIQAHAWLLYPNKQTLSDPARKRLRALQEFSQLG 964
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G++ G +Q+G + +G DL+ EML ES+ ++ + + Q
Sbjct: 965 SGYQLATRDMEIRGVGSLLGAEQSGQMTAIGFDLYMEMLQESIKEIQGQEIPQI--DDTQ 1022
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+N+ +P++YI LE M AA L Q R +YG+ P + + L+
Sbjct: 1023 IDLNLTAFIPADYIPDLEQKMSAYRAV--AASSSKTELKQIEAEWRNRYGEIPPAAQQLI 1080
Query: 744 KKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMM 781
+ + ++++A IG ++I A GK + ++T M + +K++
Sbjct: 1081 QVMELKQIAKAIGFSRIKAEGKQNLVLETPMAEPAWKLL 1119
>gi|428207986|ref|YP_007092339.1| transcription-repair coupling factor [Chroococcidiopsis thermalis PCC
7203]
gi|428009907|gb|AFY88470.1| transcription-repair coupling factor [Chroococcidiopsis thermalis PCC
7203]
Length = 1223
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 304/691 (43%), Positives = 444/691 (64%), Gaps = 17/691 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S +VDP LR GD+VVH+ GIGKF+ ++ + +++ EY+ ++YADG+ ++ Q
Sbjct: 545 SKQVDPNKLRPGDFVVHRNHGIGKFLRLESLTIDRETR---EYLVVQYADGLLRVAADQL 601
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
L R+ + +P L+K+S + AW K + + AI+K+ VDL++LY R +Q
Sbjct: 602 GS-LSRFRATD--SKPPELNKMS-SKAWANTKNRARKAIKKLAVDLLQLYAQRSQQSGYA 657
Query: 265 YP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
YP +P E FPY+PT DQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RA
Sbjct: 658 YPIDSPWQVELEDSFPYQPTTDQLKATQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRA 716
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
+F V+AGKQ LAPT +L +QH+ + ERF+ YP + VGLL+RF+S E+++ L +
Sbjct: 717 VFKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYP-VNVGLLNRFRSAEERKDLLKRLA 775
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+I+VGTH LLG V + +LGLL++DEEQRFGV QKEKI + K +DVLTLSATPIP
Sbjct: 776 TGELDIVVGTHQLLGKGVSFRDLGLLIIDEEQRFGVNQKEKIKALKTQLDVLTLSATPIP 835
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHL+ + E + SAI+ ELDRGGQVFYV+PR++
Sbjct: 836 RTLYMSLSGIREMSLITTPPPSRRPIKTHLAPYDTESIRSAIRQELDRGGQVFYVVPRVE 895
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE L++ G IA+ HGQ QLE TM F+ G IL+CT I+ESGLDI
Sbjct: 896 GIEETAATLREIVGGARIAVGHGQLDENQLESTMLSFSNGEADILVCTTIIESGLDIPRV 955
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D +FGL+QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG
Sbjct: 956 NTILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRALSDTARQRLRAIQEFTQLG 1015
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+ LA +DM IRG G + G +Q+G + +G DL+ EML E+L ++ + V + Q
Sbjct: 1016 SGYHLAMRDMEIRGVGNLLGVEQSGQMDAIGFDLYMEMLEEALREIRGQEIPQV--EDTQ 1073
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+N+ +P++YI L+ M A ++ L+Q +YG P LL
Sbjct: 1074 IDLNLTAFIPTDYITDLDQKMSAYRAVAAAKTKE--ELIQLAADWSDRYGAIPTGATQLL 1131
Query: 744 KKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 802
+ + ++++A +G ++I GK V ++T M + + +MI ++ + R+ + ++
Sbjct: 1132 RVMELKQLARKLGFSRIKPEGKQHVVLETAMEEPAWNLMIANLPDSL-RSRFVYSPGKVT 1190
Query: 803 AELLLELPREQLLNWIFQCLAELYASLPALI 833
L L EQ L + L+++ ++P +
Sbjct: 1191 VRGLAVLKTEQQLQTLIDALSKMQGAVPETV 1221
>gi|22298495|ref|NP_681742.1| transcription-repair coupling factor [Thermosynechococcus elongatus
BP-1]
gi|22294675|dbj|BAC08504.1| transcription-repair coupling factor [Thermosynechococcus elongatus
BP-1]
Length = 1142
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 313/679 (46%), Positives = 449/679 (66%), Gaps = 19/679 (2%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRM 207
+VD L+ GDYVVH++ GIG+F+ ++ + T EY+ ++YADG+ ++ Q +
Sbjct: 468 QVDLNKLQPGDYVVHRQHGIGQFLRLETLTINNETR--EYLVLQYADGILRVAADQLNS- 524
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK 267
L RY + R L+KL+ T WER K + + AI+K+ VDL++LY R +Q+ +P
Sbjct: 525 LSRYR--TQEDRAPQLNKLTGNT-WERTKARVRKAIKKVAVDLLQLYAQRAQQRGFAFPP 581
Query: 268 N-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
+ P E FPY+PTPDQ KA +V+ D+ E + PMDRL+CGDVGFGKTEVA+RAIF
Sbjct: 582 DTPWQREMEDSFPYQPTPDQLKAIQEVKADM-ESDRPMDRLVCGDVGFGKTEVAIRAIFK 640
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
V AGKQ VLAPT +L +QH+ + ERF+ YP I+VGLL+RF+S+ E+++ L +K G
Sbjct: 641 AVMAGKQVAVLAPTTILTQQHYHTLKERFAPYP-IQVGLLNRFRSERERQDLLQKLKIGE 699
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
++++VGTH LL + V + +LGLLVVDEEQRFGV QKEKI + K VDVLTLSATPIPRTL
Sbjct: 700 IDVVVGTHQLLSNSVKFRDLGLLVVDEEQRFGVNQKEKIKALKTQVDVLTLSATPIPRTL 759
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
Y+AL+G R+ SLI+TPPP R PI+THL+ + E V SAI+ ELDRGGQVFYV+PR++G+E
Sbjct: 760 YMALSGVREMSLITTPPPSRRPIQTHLAPYDPETVRSAIRQELDRGGQVFYVVPRVEGIE 819
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
LQ G I IAHGQ +LE TM F+ G IL+CT I+ESGLDI NTI
Sbjct: 820 AVAAKLQGMVVGARILIAHGQMAEGELESTMLGFSNGEADILVCTTIIESGLDIPRVNTI 879
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
+V+D Q+FGLAQLYQLRGRVGRA +AHA+LFYP + +L+D A +RL A++E +LG G+
Sbjct: 880 LVEDAQRFGLAQLYQLRGRVGRAGIQAHAWLFYPRQEVLTDAARQRLRAIQEFTQLGSGY 939
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 686
QLA +DM IRG G + G QQ G + +VG DL+ E+L E+++++ + +V QID+
Sbjct: 940 QLAIRDMEIRGVGNLLGAQQHGQLDSVGFDLYVELLEEAIAEIRGQEIPTV--DDTQIDL 997
Query: 687 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
N+ +P++Y+ L M A ++ LMQ +YG P S++ LL+ +
Sbjct: 998 NVTAFIPADYMPDLAQKMAAYRAVSAATTKE--DLMQLAAEWSDRYGALPKSVQQLLRVV 1055
Query: 747 YVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL 805
++++A GI++I GK V ++T+M + +K++++ + + + + +G +I
Sbjct: 1056 ELKQLARQCGISRIRPEGKQHVILETSMAEPAWKLLLEQLPTHLQSRFVYSQG-KITVRG 1114
Query: 806 L----LELPREQLLNWIFQ 820
L +E EQL++W Q
Sbjct: 1115 LGTQPVEKQLEQLIDWFSQ 1133
>gi|254422402|ref|ZP_05036120.1| transcription-repair coupling factor [Synechococcus sp. PCC 7335]
gi|196189891|gb|EDX84855.1| transcription-repair coupling factor [Synechococcus sp. PCC 7335]
Length = 1177
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 310/688 (45%), Positives = 458/688 (66%), Gaps = 17/688 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S +VDP LR DY+VH+ GIG+F+ ++ V K++ EY+ I+YADG+ ++PV Q
Sbjct: 498 SKQVDPNKLRPKDYIVHRNHGIGQFLKLESLTVDKETR---EYLVIQYADGLLRVPVDQM 554
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
L RY E +RP+ L+K++ AWE+ K K + AI+K+ VDL++LY R + +
Sbjct: 555 GS-LSRYRTSVE-QRPQ-LNKMTGK-AWEKTKGKARKAIKKVAVDLLKLYAQRSQMQGFT 610
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
YP++ P E FPY PTPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVALRA
Sbjct: 611 YPEDMPWQQELEDSFPYNPTPDQLKATQDVKRDM-ESDRPMDRLVCGDVGFGKTEVALRA 669
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
+F V+AGKQ +LAPT +L +QH+ + ERF+ YP I++GLL+RF++ E+++ L +
Sbjct: 670 VFKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-IQIGLLNRFRTAKERKDILLRLI 728
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+++VGTH LLG V + +LGLLVVDEEQRFGV QKEKI + K VDVLTLSATPIP
Sbjct: 729 SGELDVVVGTHQLLGKTVKFKDLGLLVVDEEQRFGVNQKEKIKAMKAQVDVLTLSATPIP 788
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY+AL+G R+ SLI+TPPP R PIKTHLS + EKV +AI+ ELDRGGQ+FYV+PR++
Sbjct: 789 RTLYMALSGVREMSLITTPPPSRRPIKTHLSPYDPEKVRTAIRQELDRGGQIFYVVPRVE 848
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE +++A PGV +AIAHGQ +LE TM F+ G +++CT I+ESGLDI
Sbjct: 849 GIEEVAGRIREAVPGVRLAIAHGQMPEGELEATMLTFSNGDADLMVCTTIIESGLDIPRV 908
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTII++D Q+FGL+QLYQLRGRVGR+ +AHA+L +P ++ LSD+A +RL A++E +LG
Sbjct: 909 NTIIIEDSQKFGLSQLYQLRGRVGRSGIQAHAWLLFPKQNQLSDKARKRLRAIQEFTQLG 968
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G QQ+G + +G DL+ +ML ES++++ + V Q
Sbjct: 969 SGYQLAMRDMEIRGIGNLLGAQQSGQMEVIGFDLYMDMLEESIAEIRGQEIPQV--DETQ 1026
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+ + +P++YI L+ M + A+ + L++ L YG P ++ L+
Sbjct: 1027 VDLKVTAFIPADYIPELDQKMSVYRSLVGASTRR--ELIEIVADLNDHYGSLPSAVGQLV 1084
Query: 744 KKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 802
K L ++++A +G ++I K V ++T M K + ++ + + + + R+ + ++
Sbjct: 1085 KVLELKQIAKPLGFSRIRTEDKQHVVLETPMEKPAWALLHEKVPAHL-RSRFVYAPGKVT 1143
Query: 803 AELLLELPREQLLNWIFQCLAELYASLP 830
L + E+ + + + L + +LP
Sbjct: 1144 VRGLGAVKPEKQIENLIEWLGHMQTALP 1171
>gi|220907244|ref|YP_002482555.1| transcription-repair coupling factor [Cyanothece sp. PCC 7425]
gi|219863855|gb|ACL44194.1| transcription-repair coupling factor [Cyanothece sp. PCC 7425]
Length = 1169
Score = 580 bits (1494), Expect = e-162, Method: Compositional matrix adjust.
Identities = 308/691 (44%), Positives = 452/691 (65%), Gaps = 23/691 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S +VDP L+ GDYVVH++ GIGKF+ ++ + +++ EY+ ++YADG+ ++ V Q
Sbjct: 490 SKQVDPNKLQPGDYVVHRQHGIGKFLKLESLTINRETR---EYLVLQYADGLLRVAVDQL 546
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
L R+ E + L+K++ AWER K+K + AI+K+ VDL++LY R +Q+
Sbjct: 547 GS-LSRFRATAE--QAPELNKMTGK-AWERTKSKVRKAIRKIAVDLLQLYAQRSQQQGFA 602
Query: 265 YP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+P P E FPY+PTPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RA
Sbjct: 603 FPLDQPWQEELEESFPYQPTPDQVKAIQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAVRA 661
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF ++AGKQ LAPT +L +QH+ + ERF+ YP I++GLL+RF+S E++ L +K
Sbjct: 662 IFKAITAGKQVAFLAPTTILTQQHYHTLKERFAPYP-IQIGLLNRFRSADERKNILQRLK 720
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+++VGTH LLG VV+ +LGLLV+DEEQRFGV QKEKI + K VDVLTLSATPIP
Sbjct: 721 TGELDVVVGTHQLLGKGVVFRDLGLLVIDEEQRFGVNQKEKIKTLKTQVDVLTLSATPIP 780
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY+AL+G R+ SLI+TPPP R PIKTHL+ + E + SA++ ELDRGGQVFYV+PR++
Sbjct: 781 RTLYMALSGVREMSLITTPPPSRRPIKTHLAPYDPETIRSALRQELDRGGQVFYVVPRVE 840
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE L++ P IAIAHGQ +LE TM F G +IL+CT I+ESGLDI
Sbjct: 841 GIEEVAAKLREMVPSARIAIAHGQMEEGELEATMLTFNNGEAEILVCTTIIESGLDIPRV 900
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D Q+FGL+QLYQLRGRVGRA +AHA+LFYP ++L++ A +RL AL+E +LG
Sbjct: 901 NTILIEDAQKFGLSQLYQLRGRVGRAGIQAHAWLFYPKLNMLTEAARQRLRALQEFTQLG 960
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q G + VG DL+ EML E+++++ + V Q
Sbjct: 961 SGYQLAMRDMEIRGVGNLLGAEQHGQMDTVGFDLYMEMLDEAIAEIRGQEIPKV--DDTQ 1018
Query: 684 IDININPRLPSEYINHLENPME---MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
ID+N+ +P++YI L+ M V A+ E L Q +YG P +
Sbjct: 1019 IDLNLTAFIPADYIPDLDQKMSAYRAVASADSTVE-----LAQIKTDWNDRYGPIPSAAL 1073
Query: 741 ILLKKLYVRRMAADIGITKIYASG-KMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGD 799
L++ + ++++A +G ++I G + + ++T M + + ++ ++ +H +
Sbjct: 1074 QLIRVVELKQIAKKLGFSRIKPEGTQHIILETPMEEPAWNLLKANLPEHLH-TRFVYSPG 1132
Query: 800 QIKAELLLELPREQLLNWIFQCLAELYASLP 830
++ L +P ++ L + L+++ +LP
Sbjct: 1133 KVTVRGLGVVPADRQLENLIDWLSKMQGALP 1163
>gi|158337270|ref|YP_001518445.1| transcription-repair coupling factor [Acaryochloris marina MBIC11017]
gi|158307511|gb|ABW29128.1| transcription-repair coupling factor [Acaryochloris marina MBIC11017]
Length = 1164
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 316/697 (45%), Positives = 455/697 (65%), Gaps = 27/697 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S KVDP L+ GD+VVH+ GIGKF+ ++ T EY+ ++YADG ++ Q
Sbjct: 481 SKKVDPNKLQPGDFVVHRNHGIGKFLKLESLTLNHETR--EYLVLQYADGTLRVAADQLG 538
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ E RP+ L+K+S AWE+ K K + +I+K+ VDL++LY R +Q+ +
Sbjct: 539 S-LSRFRNTGE-GRPQ-LNKMSGK-AWEKTKNKVRKSIKKLAVDLLKLYAQRAQQEGFTF 594
Query: 266 P-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P P E FPY+PT DQ KA DV+RD+ E PMDRL+CGDVGFGKTEVA RA+
Sbjct: 595 PLDQPWQEEMEDSFPYQPTADQLKAAQDVKRDM-ENPRPMDRLVCGDVGFGKTEVATRAV 653
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+AGKQ LAPT +L +QH+ + ERF+ YP I++GLL+RF+S E+++ + +K
Sbjct: 654 FKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYP-IQIGLLNRFRSAEERKDIQNRLKT 712
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+I+VGTH LLG V + +LGLLV+DEEQRFGV QKEKI + K VDVLTLSATPIPR
Sbjct: 713 GELDIVVGTHQLLGKSVNFRDLGLLVIDEEQRFGVNQKEKIKTLKTQVDVLTLSATPIPR 772
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY+AL+G R+ SLI+TPPP R PIKTHLS + E + SA++ ELDRGGQ+FYV+PR++G
Sbjct: 773 TLYMALSGVREMSLITTPPPSRRPIKTHLSPYDPESIRSAVRQELDRGGQIFYVVPRVEG 832
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ P IAIAHGQ +LE TM F+ G +IL+CT I+ESGLDI N
Sbjct: 833 IEEVAGKLREMVPSARIAIAHGQMVEGELEATMLTFSNGDAEILVCTTIIESGLDIPRVN 892
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D Q+FGL+QLYQLRGRVGRA +AHA+LFYP++S L+++A +RL AL+E +LG
Sbjct: 893 TILIEDAQKFGLSQLYQLRGRVGRAGIQAHAWLFYPNQSSLTEKARKRLRALQEFSQLGS 952
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML ES++++ + V Q+
Sbjct: 953 GYQLAVRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLDESINEIRGQEIPQV--DEAQV 1010
Query: 685 DININPRLPSEYINHLENPME---MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
D+N+ +P++YI L+ M V AE A+ L Q +YG P S +
Sbjct: 1011 DLNLTAFIPADYITDLDQKMSAYRAVASAETKAD-----LTQTAVDWNDRYGPIPDSAQQ 1065
Query: 742 LLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGD- 799
LL+ + ++++A +G ++I K V ++T M + FK++ +++ + + F G
Sbjct: 1066 LLRIMELKQLAKSLGFSRIKPEDKQHVMLETPMEEPAFKLLKENLPEHLRSRFVYFPGKV 1125
Query: 800 QIKAELLLELPR--EQLLNWIFQCLAELYASLPALIK 834
++ +++ R E L++W L ++ +LP + K
Sbjct: 1126 TVRGLGVMKADRQLESLIDW----LGKMKGALPEVEK 1158
>gi|359459497|ref|ZP_09248060.1| transcription-repair coupling factor [Acaryochloris sp. CCMEE 5410]
Length = 1164
Score = 577 bits (1486), Expect = e-161, Method: Compositional matrix adjust.
Identities = 314/697 (45%), Positives = 455/697 (65%), Gaps = 27/697 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP L+ GD+VVH+ G+GKF+ ++ T EY+ ++YADG ++ Q
Sbjct: 481 SKQVDPNKLQPGDFVVHRNHGVGKFLKLESLTLNHETR--EYLVLQYADGTLRVAADQLG 538
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ E RP+ L+K+S AWE+ K K + +I+K+ VDL++LY R +Q+ +
Sbjct: 539 S-LSRFRTTGE-GRPQ-LNKMSGK-AWEKTKNKVRKSIKKLAVDLLKLYAQRAQQEGFTF 594
Query: 266 P-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P P E FPY+PT DQ KA DV+RD+ E PMDRL+CGDVGFGKTEVA RA+
Sbjct: 595 PLDQPWQEEMEDSFPYQPTADQLKAAQDVKRDM-ENPRPMDRLVCGDVGFGKTEVATRAV 653
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+AGKQ LAPT +L +QH+ + ERF+ YP I++GLL+RF+S E+++ + +K
Sbjct: 654 FKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYP-IQIGLLNRFRSAEERKDIQNRLKT 712
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+I+VGTH LLG V + +LGLLV+DEEQRFGV QKEKI + K VDVLTLSATPIPR
Sbjct: 713 GELDIVVGTHQLLGKSVNFRDLGLLVIDEEQRFGVNQKEKIKTLKTQVDVLTLSATPIPR 772
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY+AL+G R+ SLI+TPPP R PIKTHLS + E + SA++ ELDRGGQ+FYV+PR++G
Sbjct: 773 TLYMALSGVREMSLITTPPPSRRPIKTHLSPYDPESIRSAVRQELDRGGQIFYVVPRVEG 832
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ P IAIAHGQ +LE TM F+ G +IL+CT I+ESGLDI N
Sbjct: 833 IEEVAGKLREMVPSARIAIAHGQMVEGELEATMLTFSNGDAEILVCTTIIESGLDIPRVN 892
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D Q+FGL+QLYQLRGRVGRA +AHA+LFYP++S L+++A +RL AL+E +LG
Sbjct: 893 TILIEDAQKFGLSQLYQLRGRVGRAGIQAHAWLFYPNQSSLTEKARKRLRALQEFSQLGS 952
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML ES++++ + V Q+
Sbjct: 953 GYQLAVRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLDESINEIRGQEIPQV--DEAQV 1010
Query: 685 DININPRLPSEYINHLENPME---MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
D+N+ +P++YI L+ M V AE A+ L Q +YG P S +
Sbjct: 1011 DLNLTAFIPADYITDLDQKMSAYRAVASAETKAD-----LTQTAVDWNDRYGPIPDSAQQ 1065
Query: 742 LLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGD- 799
LL+ + ++++A +G ++I K V ++T M + FK++ +++ + + F G
Sbjct: 1066 LLRIMELKQLAKSLGFSRIKPEDKQHVMLETPMEEPAFKLLKENLPEHLRSRFVYFPGKV 1125
Query: 800 QIKAELLLELPR--EQLLNWIFQCLAELYASLPALIK 834
++ +++ R E L++W L ++ +LP + K
Sbjct: 1126 TVRGLGVMKADRQLESLIDW----LGKMKGALPEVEK 1158
>gi|434392739|ref|YP_007127686.1| transcription-repair coupling factor [Gloeocapsa sp. PCC 7428]
gi|428264580|gb|AFZ30526.1| transcription-repair coupling factor [Gloeocapsa sp. PCC 7428]
Length = 1195
Score = 577 bits (1486), Expect = e-161, Method: Compositional matrix adjust.
Identities = 309/687 (44%), Positives = 441/687 (64%), Gaps = 15/687 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VD LR GDYVVH+ G+GKF+ ++ + T EY+ I+YADG+ ++ Q
Sbjct: 517 SKQVDLNKLRPGDYVVHRNHGVGKFLKLESLTLNNETR--EYIVIQYADGLLRVAADQLG 574
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ + T+ P L+K+S AW K + + AI+K+ VDL++LY R +Q+ Y
Sbjct: 575 S-LSRFR--STTESPPELNKMSGK-AWANTKNRVRKAIKKLAVDLLKLYAARSQQQGLAY 630
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PT DQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 631 PPDQPWQEELEDSFPYQPTTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 689
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+AGKQ +LAPT +L +QH+ + ERF+ YP I+VGLL+RF++ E+ + +
Sbjct: 690 FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-IQVGLLNRFRTAEERRDIQRRLTT 748
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+++VGTH LLG V + +LGLLVVDEEQRFGV QKEKI S K VDVLTLSATPIPR
Sbjct: 749 GELDVVVGTHQLLGKGVNFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 808
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PIKTHL+ + E V SAI+ ELDRGGQVFYV+PR+ G
Sbjct: 809 TLYMSLSGIREMSLITTPPPTRRPIKTHLAPYDSESVRSAIRQELDRGGQVFYVVPRVDG 868
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ PG IAIAHGQ +LE TM F+ G IL+CT I+ESGLDI N
Sbjct: 869 IEETAANLREMIPGGRIAIAHGQMDEGELESTMLTFSNGEADILVCTTIIESGLDIPRVN 928
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D +FGL+QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG
Sbjct: 929 TILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRALSDAARQRLRAIQEFTQLGS 988
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML E++ ++ + SV QI
Sbjct: 989 GYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPSV--DDTQI 1046
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+N+ +P++YI ++ M A ++ L+Q +YG P LL+
Sbjct: 1047 DLNLTAFIPADYITDMDQKMSAYRAVAAAKTKE--ELVQIAAEWSDRYGTIPSGANQLLR 1104
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
+ ++++A +G ++I GK + ++T M + + ++ ++ + R+ + ++
Sbjct: 1105 VMELKQIAKSLGFSRIKPEGKQHIILETPMEEPAWNLLAANLPEHL-RSRFVYSPGKVTV 1163
Query: 804 ELLLELPREQLLNWIFQCLAELYASLP 830
L L Q L + L+++ +LP
Sbjct: 1164 RGLGVLSAHQQLENLIDFLSKMQGALP 1190
>gi|428226477|ref|YP_007110574.1| transcription-repair coupling factor [Geitlerinema sp. PCC 7407]
gi|427986378|gb|AFY67522.1| transcription-repair coupling factor [Geitlerinema sp. PCC 7407]
Length = 1159
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 307/687 (44%), Positives = 440/687 (64%), Gaps = 15/687 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP L+ GDYVVH+ GIG+F+ ++ T EY+ ++YADG+ ++ Q
Sbjct: 481 SKQVDPNKLQPGDYVVHRNHGIGRFLKLESLTVNGETR--EYLVLQYADGLLRVAADQVG 538
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ K L+K++ AWER K+K + A++K+ VDL++LY R +Q+ +
Sbjct: 539 S-LSRFRATGGGKP--ELNKMTGK-AWERTKSKVRKAVKKVAVDLLQLYAQRAQQQGFSF 594
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PTPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 595 PLDMPWQEEMEDSFPYQPTPDQLKATQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 653
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+AGKQ LAPT +L +QH+ + ERF+ YP I++GLL+RF++ E+ + +
Sbjct: 654 FKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYP-IQIGLLNRFRTAQERRDIQQRLAT 712
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+I+VGTH LLG V + LGLLV+DEEQRFGV QKEKI S K VDVLTLSATPIPR
Sbjct: 713 GELDIVVGTHQLLGKGVQFKELGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 772
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY+AL+G R+ SLI+TPPP R PIKTHL+ E V +AI E+DRGGQVFYV+PR+ G
Sbjct: 773 TLYMALSGVREMSLITTPPPSRRPIKTHLAPLDMETVRTAICQEIDRGGQVFYVVPRVDG 832
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ P IAIAHGQ +LE TM F+ G +IL+CT I+ESGLDI N
Sbjct: 833 IEELAGRLREMVPSARIAIAHGQMQEGELEATMLTFSNGEAEILVCTTIIESGLDIPRVN 892
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D Q+FGL+QLYQLRGRVGRA +AHA++FYP +S LS+ A +RL A++E +LG
Sbjct: 893 TILIEDAQRFGLSQLYQLRGRVGRAGIQAHAWMFYPQQSQLSEDARKRLRAIQEFTQLGS 952
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V QI
Sbjct: 953 GYQLAVRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPQV--DDTQI 1010
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+N+ +P++YI L+ M A D L Q +YG P++ + LL+
Sbjct: 1011 DLNLTAFIPADYIPDLDQKMSAYRAVATAG--DRHELTQIAADWSDRYGPMPHATQQLLR 1068
Query: 745 KLYVRRMAADIGITKIYASG-KMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
+ ++++A +G T+I G + V ++T M + + ++ ++ S +H + + ++
Sbjct: 1069 VMTLKQIAKKLGFTRIKPEGTQHVVLETPMEEPAWNLLRGNLPSHLH-SRFVYSSSKVTV 1127
Query: 804 ELLLELPREQLLNWIFQCLAELYASLP 830
L L +Q L + L + ++P
Sbjct: 1128 RGLGALKADQQLESLINWLERMEGAIP 1154
>gi|254412667|ref|ZP_05026440.1| transcription-repair coupling factor [Coleofasciculus chthonoplastes
PCC 7420]
gi|196180402|gb|EDX75393.1| transcription-repair coupling factor [Coleofasciculus chthonoplastes
PCC 7420]
Length = 1192
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 307/690 (44%), Positives = 446/690 (64%), Gaps = 15/690 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP L GDYVVHK GIG+FV ++ T EY+ I+YADG+ ++ Q
Sbjct: 516 SKQVDPNKLTPGDYVVHKNHGIGQFVKLESLTLNHQTR--EYLVIKYADGLLRVAADQVG 573
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
+L RY + R L+K+S + AWE+ K + + I+K+ VDL++LY R ++ +
Sbjct: 574 -VLSRYRRAD--SRAPQLNKMS-SKAWEKTKNRVRKTIKKLAVDLLKLYAQRSQRSGYAF 629
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P++ + E FPY+PTPDQ KA DV+RDL E + PMDRL+CGDVGFGKTEVALRAI
Sbjct: 630 PEDSSWQDELEESFPYQPTPDQLKAVQDVKRDL-ESDRPMDRLVCGDVGFGKTEVALRAI 688
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+++GKQ LAPT +L +QH+ + ERF+ YP I VGLL+RF++ E++E +
Sbjct: 689 FKVITSGKQVAFLAPTTILTQQHYHTLKERFAPYP-IHVGLLNRFRTAQERKEIQRRLST 747
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+++VGTH +LG V + +LG+LVVDEEQRFGV QKEKI + K VDVLTL+ATPIPR
Sbjct: 748 GELDVVVGTHQVLGKTVKFRDLGMLVVDEEQRFGVNQKEKIKTLKTQVDVLTLTATPIPR 807
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R IKTHL+ ++ E V +AI+ ELDRGGQVFYV+PR++G
Sbjct: 808 TLYMSLSGVREMSLITTPPPSRRSIKTHLAPYNPEAVRTAIRTELDRGGQVFYVVPRVEG 867
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ P +AIAHGQ +LE TM F+ G ILICT I+ESGLDI N
Sbjct: 868 IEEVATKLREMIPSARLAIAHGQMPEGELEATMLTFSSGEADILICTTIIESGLDIPRVN 927
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D Q+FGLAQLYQLRGRVGR+ +AHA+LFYP + LSD A +RL A++E +LG
Sbjct: 928 TILIEDAQRFGLAQLYQLRGRVGRSGVQAHAWLFYPKQDTLSDAARKRLRAIQEFTQLGS 987
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V QI
Sbjct: 988 GYQLATRDMEIRGVGNLLGAEQSGQMDVIGFDLYMEMLQEAIREIQGQEIPQV--DDTQI 1045
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+N+ +P++YI L+ M AA L+Q +YG P +E LL+
Sbjct: 1046 DLNLTAFIPADYIPDLDQKMSAYRTV--AAANSHSELVQIAADWHDRYGPLPAPIEQLLR 1103
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
+ ++++A +G ++I GK + ++T M + +K++ +++ + R+ + ++
Sbjct: 1104 IVELKQVAKSLGFSRIKPEGKQHIALETPMEEPAWKLLKENLPEHL-RSRFVYSPGKVTV 1162
Query: 804 ELLLELPREQLLNWIFQCLAELYASLPALI 833
L L + L + L+++ +LP +
Sbjct: 1163 RGLGVLKANKQLENLIDWLSKMKGALPEAV 1192
>gi|443313012|ref|ZP_21042625.1| transcription-repair coupling factor Mfd [Synechocystis sp. PCC 7509]
gi|442776820|gb|ELR87100.1| transcription-repair coupling factor Mfd [Synechocystis sp. PCC 7509]
Length = 1166
Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust.
Identities = 306/691 (44%), Positives = 443/691 (64%), Gaps = 17/691 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S +VDP L GDYVVH+ G+GKF+ ++ + +++ EY+ I+YADG+ ++ Q
Sbjct: 488 SKQVDPNKLAQGDYVVHRSHGLGKFLKLESLTINRETR---EYLVIQYADGLLRVAADQV 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
L R+ + L+++S +++W K K + AI+K+ VDL++LY R +Q
Sbjct: 545 GS-LSRFRATGDGTP--VLNRMS-SSSWTTSKNKVRKAIKKLAVDLLKLYAARSQQTGFA 600
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
YP + P E FPY PTPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RA
Sbjct: 601 YPPDMPWQEEMEDSFPYAPTPDQLKATADVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF V+AGKQ +LAPT +L +QH+ + ERF+ YP I+VGLL+RF+S E+ +
Sbjct: 660 IFKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-IQVGLLNRFRSAEERRNIQARLA 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+I+VGTH LLG V +LGLLV+DEEQRFGV QKEKI S + VDVLTLSATPIP
Sbjct: 719 TGELDIVVGTHQLLGKGVTIRDLGLLVIDEEQRFGVNQKEKIKSLRNKVDVLTLSATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHLS + E + SAI+ E+DRGGQVFYV+PR+
Sbjct: 779 RTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYDAETIRSAIRQEIDRGGQVFYVVPRVD 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE L+ A PGV +AIAHGQ QLE TM F G +L+CT I+ESGLDI
Sbjct: 839 GIEETSAALRDALPGVRLAIAHGQMDESQLESTMLTFGNGDADVLVCTTIIESGLDIPRV 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D +FGL+QLYQLRGRVGRA +AHA+LFYP + +LSD A +RL A++E LG
Sbjct: 899 NTILIEDAHKFGLSQLYQLRGRVGRAGIQAHAWLFYPKQQMLSDAARQRLRAIQEFATLG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QL+ +DM IRG G + G +Q+G + +G DL+ E+L ES+ ++ + V + Q
Sbjct: 959 SGYQLSMRDMEIRGVGNLLGAEQSGQMEVIGFDLYMEILQESIREIQGAEIPQV--EDTQ 1016
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+N+ +P++YI L+ M A+ Q L ++G P + + LL
Sbjct: 1017 IDLNLTAFIPADYIADLDQKMSAYRAVATASSQS--ELDAIAAEWSDRFGAIPPAAKQLL 1074
Query: 744 KKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 802
+ + ++++A +G ++I K + ++T M + +K+M++++ + + G I
Sbjct: 1075 RVMELKQLAKSLGFSRIKPEAKQHIALETAMAEPAWKLMVENLPEHLKSRYVYAPGKIIV 1134
Query: 803 AELLLELPREQLLNWIFQCLAELYASLPALI 833
L L P +Q L+ + L+++ ++P +
Sbjct: 1135 RSLNLLKPNQQ-LDTLIDSLSKMQGAIPEAV 1164
>gi|443317227|ref|ZP_21046644.1| transcription-repair coupling factor Mfd [Leptolyngbya sp. PCC 6406]
gi|442783183|gb|ELR93106.1| transcription-repair coupling factor Mfd [Leptolyngbya sp. PCC 6406]
Length = 1195
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 301/647 (46%), Positives = 433/647 (66%), Gaps = 16/647 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S +VDP ++ GD+VVH+ GIG+F+ ++ V +++ EY+ I+YADG+ ++ Q
Sbjct: 516 SKQVDPNKMKPGDFVVHRNHGIGRFLKLESLTVDRETR---EYLVIQYADGLLRVAADQV 572
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
S L RY + T+R L+K+S AWE+ K + + A+QK+ VDL++LY R K +
Sbjct: 573 S-TLSRYR--STTERAPELNKMSGK-AWEKTKGRARKAVQKVAVDLLKLYAQRAKLQGFT 628
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
YP + P E FPY+PTPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+R+
Sbjct: 629 YPADMPWQQELEDSFPYQPTPDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAVRS 687
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF ++A KQ +LAPT +L +QH+ + ERF+ YP I++GLL+RF+S EK++ L +K
Sbjct: 688 IFKAITAHKQVALLAPTTILTQQHYHTLKERFAPYP-IQIGLLNRFRSAEEKKDILQRLK 746
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+++VGTH LLG V + +LGLLVVDEEQRFGV QKEKI + K VDVLTLSATPIP
Sbjct: 747 TGELDVVVGTHQLLGKGVQFQDLGLLVVDEEQRFGVNQKEKIKALKAEVDVLTLSATPIP 806
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY+AL+G R+ SLI+TPPP R IKTHLS + E + SAI+ ELDRGGQ+FYV+PR++
Sbjct: 807 RTLYMALSGVREMSLITTPPPSRRAIKTHLSPYDPEAIRSAIRQELDRGGQIFYVVPRVE 866
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE L++ G I +AHGQ +LE TM F+ G IL+CT I+ESGLDI
Sbjct: 867 GIEEISGRLREWVIGARIMVAHGQMQEGELESTMLTFSSGEADILVCTTIIESGLDIPRV 926
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D +FGL+QLYQLRGRVGR+ +AHA+LFYP + L+ QA +RL A++E +LG
Sbjct: 927 NTILIEDAHRFGLSQLYQLRGRVGRSGIQAHAWLFYPRQQSLTPQARQRLRAIQEFAQLG 986
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + VG DL+ +ML E ++ + + V + Q
Sbjct: 987 SGYQLAMRDMEIRGVGNLLGMEQSGQMDAVGFDLYMDMLEEEIADIRGQEIPKV--DNTQ 1044
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+ + +P++YI+ +E M + A + L Q L +YG PY+ E LL
Sbjct: 1045 MDLKVTAFIPNDYISDVEQKMSVYRALGTANSKR--ELTQIAADLNDRYGPIPYATEQLL 1102
Query: 744 KKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEV 789
+ L ++++A +G +I GK + ++T M + +K + D++ S +
Sbjct: 1103 RVLELKQIAKQLGFARIKPEGKQHIILETPMEEPAWKRLQDNIPSHL 1149
>gi|440684055|ref|YP_007158850.1| transcription-repair coupling factor [Anabaena cylindrica PCC 7122]
gi|428681174|gb|AFZ59940.1| transcription-repair coupling factor [Anabaena cylindrica PCC 7122]
Length = 1168
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 313/687 (45%), Positives = 437/687 (63%), Gaps = 15/687 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP LR GDYVVH+ GIGKFV ++ T +Y+ ++YADG+ ++ Q
Sbjct: 490 SKQVDPNKLRPGDYVVHRSHGIGKFVKLESLTINHETR--DYLVVQYADGLLRVAADQVG 547
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ N K P+ L K++ AWE K K + AI+K+ VDL++LY R +Q+ Y
Sbjct: 548 S-LSRFRT-NGDKAPQ-LHKMTGK-AWENTKNKVRKAIKKLAVDLLKLYAARSQQEGFSY 603
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PT DQ KA DV+RD+ E E PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 604 PADMPWQEEMEDSFPYQPTTDQLKAVQDVKRDM-ESERPMDRLVCGDVGFGKTEVAIRAI 662
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+AGKQ +LAPT +L +QH+ + ERF+ YP + VGLL+RF+S EK +
Sbjct: 663 FKAVTAGKQVALLAPTTILTQQHYHTIKERFAPYP-VNVGLLNRFRSAEEKRNIQKRLAT 721
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+I+VGTH LLG V + +LGLLV+DEEQRFGV QKEKI S K VDVLTLSATPIPR
Sbjct: 722 GELDIVVGTHQLLGKGVQFRDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 781
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PI+THL+ E V SAI+ ELDRGGQVFYV+PR++G
Sbjct: 782 TLYMSLSGIREMSLITTPPPTRRPIQTHLAPLKPEIVRSAIRQELDRGGQVFYVVPRVEG 841
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ PG AIAHGQ +LE TM F IL+CT I+ESGLDI N
Sbjct: 842 IEETTANLREMIPGGRFAIAHGQMDESELESTMLTFGNNDADILVCTTIIESGLDIPRVN 901
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D +FGLAQLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG
Sbjct: 902 TILIEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGS 961
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V QI
Sbjct: 962 GYQLAMRDMEIRGVGNLLGAEQSGQLDAIGFDLYMEMLEEAIREIRGQEIPKV--DDTQI 1019
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+N+ +PS YI ++ M A ++ L+ + R YG P S LL+
Sbjct: 1020 DLNLTAFIPSTYITDIDQKMSAYRAVATAKSKEELTLIAAEWTDR--YGTIPVSANQLLR 1077
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
+ ++++A ++G ++I K + ++T M + + ++ +++ E R+ + ++ A
Sbjct: 1078 VMELKQIAKNLGFSRIKPENKQHIVLETPMEEPAWNLLAENL-KESMRSRFIYSPGKVTA 1136
Query: 804 ELLLELPREQLLNWIFQCLAELYASLP 830
L EQ L + L+++ ++P
Sbjct: 1137 RGLGVFKAEQQLQTLIDTLSKMQGAIP 1163
>gi|428204065|ref|YP_007082654.1| transcription-repair coupling factor Mfd [Pleurocapsa sp. PCC 7327]
gi|427981497|gb|AFY79097.1| transcription-repair coupling factor Mfd [Pleurocapsa sp. PCC 7327]
Length = 1177
Score = 573 bits (1476), Expect = e-160, Method: Compositional matrix adjust.
Identities = 317/688 (46%), Positives = 435/688 (63%), Gaps = 20/688 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VD LR GDYVVHK GIGKFV K + D EY+ I+YADG+ ++P
Sbjct: 502 SKQVDLNKLRPGDYVVHKSHGIGKFV--KLETLSDR----EYLAIQYADGLLRVPADSFD 555
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L RY RP L K+S AWE K + + +++K+ VDL+ LY R + Y
Sbjct: 556 S-LSRYR--QAGNRPPELHKMSGK-AWEATKNRVRKSVRKLAVDLLNLYAKRSQLSGHAY 611
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P AE FPY+PTPDQ KA DV+ DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 612 PADTPWQAELEDSFPYQPTPDQLKAIQDVKIDL-ESDRPMDRLVCGDVGFGKTEVAIRAI 670
Query: 325 F-CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V SA KQ LAPT +L +QH+ + ERF+ YP I VGLL+RF++ +EK+E L +
Sbjct: 671 FKAVTSAHKQVAFLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTASEKKEILQRLA 729
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+I+VGTH LLG V + +LG+LV+DEEQRFGV QKEKI + K VDVLTL+ATPIP
Sbjct: 730 TGELDIVVGTHQLLGKEVKFRDLGMLVIDEEQRFGVNQKEKIKAMKTQVDVLTLTATPIP 789
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHLS ++ E V +AI+ ELDRGGQVFYV+PR++
Sbjct: 790 RTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNLEVVRTAIRNELDRGGQVFYVVPRVE 849
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE L Q P I +AHGQ S +LE TM F G IL+CT I+ESGLDI
Sbjct: 850 GIEETAGQLGQTIPSARIVVAHGQMDSSELEATMLAFNNGEADILVCTTIIESGLDIPRV 909
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTIIV+D Q FGL+QLYQLRGRVGR+ +AHA+L YP K L+D A +RL AL+E +LG
Sbjct: 910 NTIIVEDAQLFGLSQLYQLRGRVGRSGVQAHAWLLYPSKGTLTDTARQRLRALQEFTQLG 969
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G +L+ EML E++ ++ + V Q
Sbjct: 970 SGYQLATRDMEIRGVGNLLGVEQSGQMEAIGFELYMEMLQEAIEEIQGQEIPQV--DDAQ 1027
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ + +P++YI LE M+ A + L Q +YGK P +E LL
Sbjct: 1028 IDLKLTAFIPTDYIPDLEQKMDAYRAVALANSKR--ELQQIAADWNDRYGKLPTPVEQLL 1085
Query: 744 KKLYVRRMAADIGITKIYASG-KMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 802
K + ++++A +G +++ G + V ++T M + +K++ + + + R+ + ++
Sbjct: 1086 KVVELKQIAKSLGFSRVKPDGSQHVILETPMEEPAWKLLQEKLPEHL-RSRFVYSPKKVT 1144
Query: 803 AELLLELPREQLLNWIFQCLAELYASLP 830
L L +Q L + L ++ +LP
Sbjct: 1145 VRGLGVLNPQQQLENLIDWLGKMLDALP 1172
>gi|75908979|ref|YP_323275.1| transcription-repair coupling factor [Anabaena variabilis ATCC 29413]
gi|75702704|gb|ABA22380.1| transcription-repair coupling factor [Anabaena variabilis ATCC 29413]
Length = 1188
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 305/686 (44%), Positives = 433/686 (63%), Gaps = 15/686 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP LR GDYVVH+ GIGKFV ++ D T +Y+ ++YADG+ ++ Q
Sbjct: 510 SKQVDPNKLRPGDYVVHRSHGIGKFVKLESLTINDETR--DYIVVQYADGLLRVAADQVG 567
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ + +P L K++ AW+ K + + AI+K+ VDL++LY R +Q+ Y
Sbjct: 568 -ALSRFRATGD--KPPELHKMTGK-AWDNTKNRVRKAIKKLAVDLLKLYAARSQQQGFAY 623
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P++ P E FPY+ T DQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 624 PQDMPWQEEMEDSFPYQATTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 682
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V++GKQ +LAPT +L +QH+ + ERF+ YP + VGLL+RF++ E+ +
Sbjct: 683 FKAVTSGKQVALLAPTTILTQQHYHTIKERFAPYP-VNVGLLNRFRTAEERRNIQKRLAT 741
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+I+VGTH LLG V + +LGLLV+DEEQRFGV QKEKI S K VDVLTLSATPIPR
Sbjct: 742 GELDIVVGTHQLLGKSVNFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 801
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PIKTHLS + E V SAI+ ELDRGGQVFYV+PR+ G
Sbjct: 802 TLYMSLSGIREMSLITTPPPTRRPIKTHLSPRNPESVRSAIRQELDRGGQVFYVVPRVDG 861
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ PG AIAHGQ +LE TM F+ G IL+CT I+ESGLDI N
Sbjct: 862 IEEITANLREMVPGARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVN 921
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D +FGL+QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG
Sbjct: 922 TILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGS 981
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML ES+ ++ + V QI
Sbjct: 982 GYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLEESIREIRGQEIPKV--DDTQI 1039
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+N+ +P++YI ++ M A +D L Q +YG P S LL+
Sbjct: 1040 DLNLTAFIPADYITDIDQKMSAYRAVAAAKSKD--ELTQIAAEWSDRYGTLPVSANQLLR 1097
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
+ ++++A +G ++I K V ++T M + + ++ ++ + + + ++
Sbjct: 1098 VMELKQLAKKLGFSRIKPESKQHVVLETPMEEPAWNLLAANLPEHL-KTRFVYSPGKVTV 1156
Query: 804 ELLLELPREQLLNWIFQCLAELYASL 829
L L +Q L + L + ++
Sbjct: 1157 RGLAVLKADQQLQSLIDALGRMQGAI 1182
>gi|17232707|ref|NP_489255.1| transcriptional-repair coupling factor [Nostoc sp. PCC 7120]
gi|17134354|dbj|BAB76914.1| transcriptional-repair coupling factor [Nostoc sp. PCC 7120]
Length = 1185
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 308/692 (44%), Positives = 434/692 (62%), Gaps = 15/692 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP LR GDYVVH+ GIGKFV ++ D T +Y+ ++YADG+ ++ Q
Sbjct: 505 SKQVDPNKLRQGDYVVHRSHGIGKFVKLESLTINDETR--DYIVVQYADGLLRVAADQVG 562
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ + K P L K++ AW+ K + + AI+K+ VDL++LY R +Q+ Y
Sbjct: 563 S-LSRFRTTGD-KAPE-LHKMTGK-AWDNTKNRVRKAIKKLAVDLLKLYAARSQQQGFAY 618
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P++ P E FPY+ T DQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 619 PQDMPWQEEMEDSFPYQATTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 677
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V++GKQ +LAPT +L +QH+ + ERFS YP + VGLL+RF++ E+ +
Sbjct: 678 FKAVTSGKQVALLAPTTILTQQHYHTLKERFSPYP-VNVGLLNRFRTAEERRNIQKRLAT 736
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+I+VGTH LLG V + +LGLLV+DEEQRFGV QKEKI S K VDVLTLSATPIPR
Sbjct: 737 GELDIVVGTHQLLGKSVSFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 796
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PIKTHLS + E V SAI+ ELDRGGQVFYV+PR+ G
Sbjct: 797 TLYMSLSGIREMSLITTPPPTRRPIKTHLSPRNPESVRSAIRQELDRGGQVFYVVPRVDG 856
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ PG AIAHGQ +LE TM F+ G IL+CT I+ESGLDI N
Sbjct: 857 IEEITANLREMVPGARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVN 916
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D +FGL+QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG
Sbjct: 917 TILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGS 976
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML ES+ ++ + V QI
Sbjct: 977 GYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLEESIREIRGQEIPKV--DDTQI 1034
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+N+ +P++YI ++ M A +D L Q +YG P S LL+
Sbjct: 1035 DLNLTAFIPADYITDIDQKMSAYRAVAAAKSKD--ELTQIAAEWSDRYGTLPVSANQLLR 1092
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
+ ++++A +G ++I K V ++T M + + ++ ++ + + + ++
Sbjct: 1093 VMELKQLAKKLGFSRIKPESKQHVVLETPMEEPAWNLLAANLPEHL-KTRFVYSPGKVTV 1151
Query: 804 ELLLELPREQLLNWIFQCLAELYASLPALIKY 835
L L +Q L + L + ++ Y
Sbjct: 1152 RGLAVLKADQQLQSLIDALGRMQGAIADTADY 1183
>gi|427735491|ref|YP_007055035.1| transcription-repair coupling factor Mfd [Rivularia sp. PCC 7116]
gi|427370532|gb|AFY54488.1| transcription-repair coupling factor Mfd [Rivularia sp. PCC 7116]
Length = 1184
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 299/642 (46%), Positives = 423/642 (65%), Gaps = 14/642 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S KVDP LR GDYV+H+ G+G+F+ ++ + T +Y+ ++YADG+ ++ Q
Sbjct: 504 SKKVDPNKLRPGDYVIHRNHGLGQFLKLESLTLNNETR--DYLVVKYADGLLRVAADQVG 561
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ T + L+K++ AWE K K + ++K+ VDL++LY R +Q Y
Sbjct: 562 -ALSRFR--TTTNKSPQLNKMTGK-AWENTKNKVRKTVKKLAVDLLKLYSQRSQQTGFTY 617
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P++ P E FPY+PT DQ KA DV+RD+ E E PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 618 PQDSPWQEEMEDSFPYQPTTDQLKATQDVKRDM-ESERPMDRLVCGDVGFGKTEVAIRAI 676
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V++GKQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF+S EK +
Sbjct: 677 FKAVTSGKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRSAEEKRNIQKRLLT 735
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+I+VGTH LLG V Y +LGLLVVDEEQRFGV QKEKI S K VDVLTLSATPIPR
Sbjct: 736 GELDIVVGTHQLLGKSVQYKDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 795
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PI+THLS + E +AI+ ELDRGGQVFYV+PR++G
Sbjct: 796 TLYMSLSGIREMSLITTPPPSRRPIQTHLSPMNPEATRTAIRQELDRGGQVFYVVPRVEG 855
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E+ F+++ P IAIAHGQ + +LE M F+ G +ILICT I+ESGLDI N
Sbjct: 856 IEDKSAFIREMIPNARIAIAHGQMEASELESIMLSFSSGEAEILICTTIIESGLDIPRVN 915
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D Q+FGLAQLYQLRGRVGRA +AHA+LFYP + LS+ A +RL A++E +LG
Sbjct: 916 TILIEDAQKFGLAQLYQLRGRVGRAGIQAHAWLFYPRQRSLSEAARKRLRAIQEFTQLGS 975
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML E++ ++ + +V + QI
Sbjct: 976 GYQLAMRDMEIRGVGNLLGAEQSGQMNVIGFDLYMEMLEEAIREIRGQEIPTV--EDTQI 1033
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+N+ +P++YI L+ M A + L +YG P S LL+
Sbjct: 1034 DLNLTAFIPADYITDLDQKMSAYRAVAVANSKG--ELAMIAAEWNDRYGTVPASANQLLR 1091
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSM 785
+ ++++A ++G ++I GK + ++T M + +K++ + +
Sbjct: 1092 VMELKQLAKNLGFSRIKPDGKQHIVLETPMEEPGWKLLAEKL 1133
>gi|427709632|ref|YP_007052009.1| transcription-repair coupling factor [Nostoc sp. PCC 7107]
gi|427362137|gb|AFY44859.1| transcription-repair coupling factor [Nostoc sp. PCC 7107]
Length = 1168
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 302/638 (47%), Positives = 416/638 (65%), Gaps = 14/638 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP LR GDYVVH+ GIGKFV ++ D T +Y+ ++YADG+ ++ Q
Sbjct: 490 SKQVDPNKLRPGDYVVHRSHGIGKFVKLESLTFNDETR--DYIVVQYADGLLRVAADQVG 547
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ + K P L K++ AW+ K + + AI+K+ VDL++LY R +Q+ Y
Sbjct: 548 S-LSRFRTTGD-KAPE-LHKMTGK-AWDNTKNRVRKAIKKLAVDLLKLYAARSQQQGYAY 603
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PT DQ KA DV+RD+ ER+ PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 604 PHDMPWQEEMEDSFPYQPTTDQLKAVQDVKRDM-ERDRPMDRLVCGDVGFGKTEVAIRAI 662
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V++GKQ +LAPT +L +QH+ + ERF+ YP + VGLL+RF+S E+ +
Sbjct: 663 FKAVTSGKQVALLAPTTILTQQHYHTLKERFAPYP-VNVGLLNRFRSAEERRTIQKRLAT 721
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+I+VGTH LLG V + +LGLLV+DEEQRFGV QKEKI S K VDVLTLSATPIPR
Sbjct: 722 GELDIVVGTHQLLGKSVSFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 781
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PIKTHLS + E V SAI+ ELDRGGQVFYV+PR+ G
Sbjct: 782 TLYMSLSGIREMSLITTPPPTRRPIKTHLSPRNPESVRSAIRQELDRGGQVFYVVPRVDG 841
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ PG AIAHGQ +LE TM F+ G IL+CT I+ESGLDI N
Sbjct: 842 IEEITANLREMVPGARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVN 901
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D +FGL+QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG
Sbjct: 902 TILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRTLSDAARQRLRAIQEFTQLGS 961
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V QI
Sbjct: 962 GYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPQV--DDTQI 1019
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+N+ +P++YI ++ M A Q+ L Q +YG P LL+
Sbjct: 1020 DLNLTAFVPADYIPDIDQKMSAYRAVAAAKSQE--ELTQIAAEWSDRYGTLPVPANQLLR 1077
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMM 781
+ ++++A +G ++I K V ++T M + + ++
Sbjct: 1078 VMELKQLAKKLGFSRIKPENKQHVILETPMEEPAWNLL 1115
>gi|428777224|ref|YP_007169011.1| transcription-repair coupling factor [Halothece sp. PCC 7418]
gi|428691503|gb|AFZ44797.1| transcription-repair coupling factor [Halothece sp. PCC 7418]
Length = 1164
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 311/686 (45%), Positives = 442/686 (64%), Gaps = 19/686 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VD LR GDYVVH++ G+GKF+ + +S EY+ +EYADG+ ++P +
Sbjct: 489 SKQVDLNKLRPGDYVVHRQHGVGKFLKL------ESWETREYLVVEYADGLLRVPAD-SL 541
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L RY E K P+ L+K+S AW+ K K + A++K+ +DL+ LY R + Y
Sbjct: 542 ESLSRYRHLGEGK-PQ-LNKMSGK-AWQNTKNKVEKAVKKVAIDLLNLYAQRSQLSGYAY 598
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P++ P E FPY+ TPDQ KA DV+RDL E E PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 599 PEDTPWQQELEDSFPYQATPDQLKAVQDVKRDL-ESELPMDRLVCGDVGFGKTEVAIRAI 657
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F ++ +GKQ LAPT +L +QH+ + ERF+ YP I +GLL+RF++ E+++ L +
Sbjct: 658 FKILMSGKQVAFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTANERKDILKRLST 716
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+++VGTH LL V Y +LG+LVVDEEQRFGV QKEKI S K VDVLTL+ATPIPR
Sbjct: 717 GELDVVVGTHQLLNKSVKYKDLGMLVVDEEQRFGVNQKEKIKSMKTEVDVLTLTATPIPR 776
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PIKTHLS + E + +AI+ ELDRGGQVFYV+PR++G
Sbjct: 777 TLYMSLSGIREMSLITTPPPSRRPIKTHLSPYDGEAIRTAIRNELDRGGQVFYVVPRVEG 836
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ PG IAIAHGQ +LE TM F G IL+CT I+ESGLDI N
Sbjct: 837 IEETAGKLREMVPGARIAIAHGQMEEAELESTMLTFNNGDADILVCTTIIESGLDIPRVN 896
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+V+D Q+FGL+QLYQLRGRVGR+ +AHA+L YP +S LSD A +RL AL+E +LG
Sbjct: 897 TIVVEDSQKFGLSQLYQLRGRVGRSGIQAHAWLLYPKQSSLSDTAKKRLRALQEFTQLGS 956
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +D+ IRG G + G +Q+G + VG DL+ ML E++ +V + V QI
Sbjct: 957 GYQLAMRDLEIRGVGELLGAKQSGQMNAVGFDLYMSMLQEAIQEVQGQDIPQV--DDTQI 1014
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+ + +P+ YI ++ M+ A+ + L Q + R +YG+ P ++ LL+
Sbjct: 1015 DLKLTAFVPNHYITDMDQKMDAYRTVTMASSKK--ELDQIRQDWRDRYGELPAPVQQLLQ 1072
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
+ ++++ +G ++I GK V ++T M + +K + + + + + +G ++
Sbjct: 1073 VMELKQITKSLGFSRIKPEGKQHVALETPMEEPAWKRLQEHLPKHIASRFIYSKG-KVTV 1131
Query: 804 ELLLELPREQLLNWIFQCLAELYASL 829
L L +Q L+ + L EL ASL
Sbjct: 1132 RGLGVLKTQQQLDNLINWLGELRASL 1157
>gi|332706023|ref|ZP_08426096.1| transcription-repair coupling factor mfd [Moorea producens 3L]
gi|332355283|gb|EGJ34750.1| transcription-repair coupling factor mfd [Moorea producens 3L]
Length = 1295
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 310/688 (45%), Positives = 439/688 (63%), Gaps = 17/688 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S +VDP LR GDYVVHK GIG+F+ + K + ++ EY+ I+YADG+ ++ Q
Sbjct: 607 SQQVDPNKLRPGDYVVHKNHGIGQFLKLEKLSINNETR---EYLVIKYADGLLRVAADQL 663
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+L R+ T P+ L K+S T WE+ K + + +I+K+ VDL++LY R +Q
Sbjct: 664 G-VLSRFRHTG-TGLPQ-LHKMSGKT-WEKTKNRVRKSIKKVAVDLLKLYAQRAQQSGYC 719
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+P + P E FPY+PTPDQ KA DV+RDL E + PMDRL+CGDVGFGKTEVA+RA
Sbjct: 720 FPADSPWQQELEDSFPYQPTPDQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIRA 778
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF V++ KQ LAPT +L +QH+ + ERFS YP I VGLL+RF+S EK + L +K
Sbjct: 779 IFKAVTSNKQVAFLAPTTILTQQHYHTIKERFSPYP-INVGLLNRFRSPQEKRDILQRLK 837
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+++VGTH LLG V + LGLLV+DEEQRFGV QKEKI SFK VDVLTLSATPIP
Sbjct: 838 TGELDVVVGTHQLLGKSVTFRELGLLVIDEEQRFGVNQKEKIKSFKTQVDVLTLSATPIP 897
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHLS + E V +AI+ ELDRGGQVFYV+PR++
Sbjct: 898 RTLYMSLSGVREMSLITTPPPLRRPIKTHLSPYKPEAVRTAIRMELDRGGQVFYVVPRVE 957
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE L++ IAIAHGQ +LE M F+ G IL+CT I+ESGLDI
Sbjct: 958 GIEEVAAELREMILEARIAIAHGQLDPAELESIMLTFSNGEADILVCTTIIESGLDIPRV 1017
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D +FGLAQLYQLRGRVGRA +AHA+L YP++ +LS+ A +RL A++E +LG
Sbjct: 1018 NTIVIEDAHKFGLAQLYQLRGRVGRAGIQAHAWLLYPNQKVLSEAAKKRLRAIQEFTQLG 1077
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+ LA +DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V Q
Sbjct: 1078 SGYLLATRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQEAIKEIQGQEIPQV--DDTQ 1135
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ I +P++YI ++ + AA Q L Q +YG P E LL
Sbjct: 1136 IDLQITAFIPADYIPDIDQKISAYRGVAAAASQK--ELAQIAADWSDRYGPIPSVAEQLL 1193
Query: 744 KKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 802
+ + ++++ +G ++I GK + ++T M + +K++ +++ + R+ + ++
Sbjct: 1194 RVMELKQLGKSLGFSRIRPEGKQHILLETPMEEPAWKLLQENLPQHL-RSRFVYSPGKVT 1252
Query: 803 AELLLELPREQLLNWIFQCLAELYASLP 830
L L + L + L ++ +LP
Sbjct: 1253 VRGLGLLKTNKQLESLIDWLGKMQGALP 1280
>gi|434407515|ref|YP_007150400.1| transcription-repair coupling factor Mfd [Cylindrospermum stagnale
PCC 7417]
gi|428261770|gb|AFZ27720.1| transcription-repair coupling factor Mfd [Cylindrospermum stagnale
PCC 7417]
Length = 1161
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 308/687 (44%), Positives = 434/687 (63%), Gaps = 15/687 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP LR GDYVVH+ GIGKFV ++ D T +Y+ ++YADG+ ++ Q
Sbjct: 483 SKQVDPNKLRPGDYVVHRSHGIGKFVKLESLTINDETR--DYLVVQYADGLLRVAADQVG 540
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ N K P L K+S AW+ K K + AI+K+ VDL++LY R +Q+ Y
Sbjct: 541 S-LSRFRT-NGDKAPE-LHKMSGK-AWDNTKNKVRKAIKKLAVDLLKLYAARSQQQGFAY 596
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PT DQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 597 PADMPWQEELEDSFPYQPTTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 655
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+AGKQ +LAPT +L +QH+ + ERF+ YP + VGLL+RF+S E+ + +
Sbjct: 656 FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-VNVGLLNRFRSAEERRDIQKRLAT 714
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+I+VGTH LLG V + +LGLLVVDEEQRFGV QKEKI S K VDVLTLSATPIPR
Sbjct: 715 GELDIVVGTHQLLGKGVQFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 774
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++++G R+ SLI+TPPP R PI+THL+ + E V SAI+ ELDRGGQVFYV+PR++G
Sbjct: 775 TLYMSMSGIREMSLITTPPPSRRPIQTHLAPLNPEIVRSAIRQELDRGGQVFYVVPRVEG 834
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ PG AIAHGQ +LE TM F+ IL+CT I+ESGLDI N
Sbjct: 835 IEETTANLREMIPGGRFAIAHGQMDESELESTMLTFSSSEADILVCTTIIESGLDIPRVN 894
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D +FGLAQLYQLRGRVGRA +AHA+LFYP + +LSD A +RL A++E +LG
Sbjct: 895 TILIEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKQRVLSDAARQRLRAIQEFTQLGS 954
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V QI
Sbjct: 955 GYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPKV--DDTQI 1012
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+N+ +P++YI L+ M A + L Q ++G P LL+
Sbjct: 1013 DLNLTAFIPADYITDLDQKMSAYRAVATAKSKG--ELKQIAAEWSDRFGTIPVPANQLLR 1070
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
+ ++++ +G ++I K V ++T M + + ++ ++ SE R+ + ++
Sbjct: 1071 VMELKQLGKKLGFSRIKPENKQHVVLETPMAEPAWNLLAANL-SENMRSRFVYSPGKVTV 1129
Query: 804 ELLLELPREQLLNWIFQCLAELYASLP 830
L +Q L + ++ ++P
Sbjct: 1130 RGLGVFKADQQLQNLIDAFGKMQGAIP 1156
>gi|428305014|ref|YP_007141839.1| transcription-repair coupling factor [Crinalium epipsammum PCC 9333]
gi|428246549|gb|AFZ12329.1| transcription-repair coupling factor [Crinalium epipsammum PCC 9333]
Length = 1153
Score = 567 bits (1461), Expect = e-158, Method: Compositional matrix adjust.
Identities = 304/690 (44%), Positives = 437/690 (63%), Gaps = 15/690 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP L +GDYVVH+ G+GKF+ ++ T +Y+ I+YADG+ ++ Q
Sbjct: 475 SKQVDPNKLEAGDYVVHRNHGLGKFLKLESLTLNHETR--DYLVIQYADGLLRVAADQVG 532
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ + + L K+S AWE+ K K + AI+K+ VDL+ LY R +Q Y
Sbjct: 533 S-LSRFR--HTADQAPALHKMSGK-AWEKTKGKVRKAIKKLAVDLLNLYAKRSQQTGFTY 588
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PTPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 589 PPDSPWQEELEDSFPYQPTPDQLKATQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 647
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+AGKQ + LAPT +L +QH+ + ERF+ YP + VGLL+RF+S E+ + +
Sbjct: 648 FKAVTAGKQVVFLAPTTILTQQHYHTLKERFAPYP-VNVGLLNRFRSAEERRNIIQRLAT 706
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+I+VGTH LL + +LGLLVVDEEQRFGV QKEKI S K VDVLTLSATPIPR
Sbjct: 707 GELDIVVGTHQLLSKEIKVKDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 766
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PIKTHLS+F E + +AI+ ELDRGGQVFYV+PRI+G
Sbjct: 767 TLYMSLSGIREMSLITTPPPSRRPIKTHLSSFDPEAIRTAIRQELDRGGQVFYVVPRIEG 826
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE +++ PG +AIAHGQ +LE TM F+ G IL+CT I+ESGLDI N
Sbjct: 827 IEETGAKVREMIPGCRLAIAHGQMDESELEATMLAFSSGEADILLCTTIIESGLDIPRVN 886
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D +FGL+QLYQLRGRVGRA +AHA+LFYP +S L+D A +RL A++E +LG
Sbjct: 887 TILIEDAHKFGLSQLYQLRGRVGRAGIQAHAWLFYPKQSKLTDAARQRLRAIQEFTQLGS 946
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML ES+ ++ + V QI
Sbjct: 947 GYQLATRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEESIREIRGQEIPKV--DDTQI 1004
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+ + +P++YI LE M A ++ L +YG+ P + + LL
Sbjct: 1005 DLQLTALIPADYIQDLEQKMSAYRAVASANSKE--ELNNIAAEWSDRYGEIPKAAKQLLC 1062
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
+ ++++A +G ++I K + ++T M + + ++ ++ + R+ + ++
Sbjct: 1063 VMELKQVAKQLGFSRIKPEAKQHIVLETPMEEPAWNLISANLPDHL-RSRFVYSKGKVTI 1121
Query: 804 ELLLELPREQLLNWIFQCLAELYASLPALI 833
L L ++ L + L ++ ++P +
Sbjct: 1122 RGLAVLKADKQLESLIDWLGKMQGAIPEAV 1151
>gi|414077448|ref|YP_006996766.1| transcription-repair coupling factor [Anabaena sp. 90]
gi|413970864|gb|AFW94953.1| transcription-repair coupling factor [Anabaena sp. 90]
Length = 1171
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 301/643 (46%), Positives = 418/643 (65%), Gaps = 14/643 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP LR GDYVVH+ GIGKFV ++ D T +Y+ ++YADG+ ++ Q
Sbjct: 495 SKQVDPNKLRQGDYVVHRSHGIGKFVKLESLTINDETR--DYLVVQYADGLLRVAADQVG 552
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ + + L K+S AWE K+K + AI+K+ VDL++LY R +Q+ Y
Sbjct: 553 S-LSRFRTGGD--QAPELHKMSGK-AWENTKSKVRKAIKKLAVDLLKLYAARSQQQGFSY 608
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PT DQ KA DV+RD+ E E PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 609 PHDMPWQEEMEDSFPYQPTTDQLKAVQDVKRDM-ESERPMDRLVCGDVGFGKTEVAIRAI 667
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+AGKQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF+S EK +
Sbjct: 668 FKAVTAGKQVALLAPTTILTQQHYHTIKERFAPYP-INVGLLNRFRSAEEKRNIQKRLAT 726
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+I+VGTH LLG V + +LGLLV+DEEQRFGV QKEKI S K VDVLTLSATPIPR
Sbjct: 727 GELDIVVGTHQLLGKSVQFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 786
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PI+THLS + + + SAI+ ELDRGGQVFYV+PR+ G
Sbjct: 787 TLYMSLSGIREMSLITTPPPTRRPIQTHLSPLNSDVIRSAIRQELDRGGQVFYVVPRVDG 846
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ PG AIAHGQ +LE TM F IL+CT I+ESGLDI N
Sbjct: 847 IEETTTKLREMVPGGRFAIAHGQMDESELESTMLTFGNNDADILVCTTIIESGLDIPRVN 906
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D +FGL+QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG
Sbjct: 907 TILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGS 966
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V + Q+
Sbjct: 967 GYQLAMRDMEIRGVGNLLGAEQSGQMDVIGFDLYMEMLEEAIREIRGQEIPKV--EDTQV 1024
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+N+ +P+ YI L+ M A + + L Q +YG P LL+
Sbjct: 1025 DLNLTAFIPATYIPDLDQKMSAYRAV--ATVKSKYELKQIAAEWTDRYGTIPVPASQLLR 1082
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMT 786
+ ++++A ++G ++I K + ++T M + + ++ +++T
Sbjct: 1083 VMELKQLAKNLGFSRIKPENKQHIVLETPMEEPAWNLLAENLT 1125
>gi|354564629|ref|ZP_08983805.1| transcription-repair coupling factor [Fischerella sp. JSC-11]
gi|353549755|gb|EHC19194.1| transcription-repair coupling factor [Fischerella sp. JSC-11]
Length = 1188
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 296/642 (46%), Positives = 422/642 (65%), Gaps = 14/642 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP LR GDYVVH+ GIGKF+ ++ + T +Y+ ++YADG+ ++ Q +
Sbjct: 510 SKQVDPNKLRPGDYVVHRNHGIGKFLKLESLTVNNETR--DYLVVQYADGLLRVAADQVN 567
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ + +P L+K++ AWE K K + AI+K+ VDL++LY R +QK +
Sbjct: 568 -ALSRFR--TTSDKPPELNKMTGK-AWENTKNKVRKAIKKLAVDLLKLYAARSQQKGFAF 623
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PT DQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 624 PADMPWQQELEDSFPYQPTTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 682
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+AGKQ +LAPT +L +QH+ + ERF+ YP I +GLL+RF+S E+ + +
Sbjct: 683 FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRSPQERRDIQKRLTT 741
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+++VGTH LL V + +LG+LVVDEEQRFGV QKEKI + K VDVLTLSATPIPR
Sbjct: 742 GELDVVVGTHQLLSKDVNFKDLGMLVVDEEQRFGVNQKEKIKTLKTQVDVLTLSATPIPR 801
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PIKTHL+ + E V SAI+ ELDRGGQVFYV+PR++G
Sbjct: 802 TLYMSLSGIREMSLITTPPPSRRPIKTHLAPMNPETVRSAIRQELDRGGQVFYVVPRVEG 861
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E+ + L+Q PG IAIAHGQ + +LE M F+ IL+CT I+ESGLDI N
Sbjct: 862 IEKRTEELRQMIPGARIAIAHGQMEAGELESIMLSFSSAEADILVCTTIIESGLDIPRVN 921
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D +FGLAQLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG
Sbjct: 922 TILIEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKQRTLSDAARQRLRAIQEFTQLGS 981
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V + QI
Sbjct: 982 GYQLAVRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLEEAIREIRGQEIPKV--EDTQI 1039
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+N+ +P++YI ++ M A ++ L Q +YG P LL+
Sbjct: 1040 DLNLTAFVPADYIPDIDQKMSAYRAVAAAKSKE--ELTQIAAEWSDRYGTIPKPASQLLR 1097
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSM 785
+ ++++A +G ++I K V ++T M + + ++ ++
Sbjct: 1098 VMELKQLAKKLGFSRIKPEAKQHVVLETPMEEPAWNLLAGNL 1139
>gi|186685547|ref|YP_001868743.1| transcription-repair coupling factor [Nostoc punctiforme PCC 73102]
gi|186467999|gb|ACC83800.1| transcription-repair coupling factor [Nostoc punctiforme PCC 73102]
Length = 1170
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 299/638 (46%), Positives = 417/638 (65%), Gaps = 14/638 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP LR GDYVVH+ G+GKFV ++ D T +Y+ ++YADG+ ++ Q
Sbjct: 492 SKQVDPNKLRPGDYVVHRNHGVGKFVKLESLTINDETR--DYLVVQYADGLLRVAADQVG 549
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ + K P L++++ AWE K K + AI+K+ VDL++LY R +Q+ +
Sbjct: 550 -ALSRFRAGGD-KAPE-LNRMTGK-AWENTKNKVRKAIKKLAVDLLKLYAARSQQQGFSF 605
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PT DQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RA+
Sbjct: 606 PSDMPWQEELEDSFPYQPTTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAV 664
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+AGKQ +LAPT +L +QH+ + ERF+ YP + VGLL+RF+S E+ + +
Sbjct: 665 FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-VNVGLLNRFRSAEERRDIQKRLAT 723
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+++VGT LLG V++ +LGLLVVDEEQRFGV QKEKI S K VDVLTLSATPIPR
Sbjct: 724 GELDVVVGTQQLLGKGVMFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 783
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R IKTHLS + E + SAI+ ELDRGGQVFYV+PR+ G
Sbjct: 784 TLYMSLSGIREMSLITTPPPTRRAIKTHLSPINSESIRSAIRQELDRGGQVFYVVPRVDG 843
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ PG AIAHGQ +LE TM F+ G IL+CT I+ESGLDI N
Sbjct: 844 IEETTANLREVIPGARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVN 903
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D +FGLAQLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG
Sbjct: 904 TILIEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKQRQLSDAARQRLRAIQEFTQLGS 963
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V + QI
Sbjct: 964 GYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPKV--EDTQI 1021
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+N+ +P++YI L+ M A + L Q +YG P S LL+
Sbjct: 1022 DLNLTAFIPADYITDLDQKMSAYRAVATAKSKS--ELNQIAAEWSDRYGTLPVSANQLLR 1079
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMM 781
+ ++++A +G ++I K V ++T M + + ++
Sbjct: 1080 VMELKQLAKKLGFSRIKPEQKQHVVLETPMEEPAWNLL 1117
>gi|427731824|ref|YP_007078061.1| transcription-repair coupling factor Mfd [Nostoc sp. PCC 7524]
gi|427367743|gb|AFY50464.1| transcription-repair coupling factor Mfd [Nostoc sp. PCC 7524]
Length = 1195
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 297/638 (46%), Positives = 418/638 (65%), Gaps = 14/638 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP LR GDYVVHK GIGKFV ++ D T +Y+ ++YADG+ ++ Q
Sbjct: 517 SKQVDPNKLRPGDYVVHKSHGIGKFVKLESLTINDETR--DYIVVQYADGLLRVAADQVG 574
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ + K P L K++ AWE K + + AI+K+ VDL++LY R +Q+ Y
Sbjct: 575 S-LSRFRSTGD-KAPE-LHKMTGK-AWENTKNRVRKAIKKLAVDLLKLYAKRSQQEGYAY 630
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P++ P E FPY+PT DQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 631 PQDMPWQEEMEDSFPYQPTTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 689
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V++GKQ +LAPT +L +QH+ + ERF+ YP + VGLL+RF++ E+ + +
Sbjct: 690 FKAVTSGKQVALLAPTTILTQQHYHTLKERFAPYP-VNVGLLNRFRTAEERRDIQKRLAT 748
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+I+VGTH +LG V + +LGLLV+DEEQRFGV QKEKI + K +DVLTLSATPIPR
Sbjct: 749 GELDIVVGTHQILGKGVNFKDLGLLVIDEEQRFGVNQKEKIKTLKTQIDVLTLSATPIPR 808
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PI+THLS + E + SAI+ ELDRGGQVFYV+PR++G
Sbjct: 809 TLYMSLSGIREMSLITTPPPTRRPIQTHLSPMNPESIRSAIRQELDRGGQVFYVVPRVEG 868
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ PG AIAHGQ +LE TM F+ G IL+CT I+ESGLDI N
Sbjct: 869 IEETTSKLREMIPGGRFAIAHGQMDESELESTMLTFSNGEADILVCTTIIESGLDIPRVN 928
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D +FGL+QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG
Sbjct: 929 TILIEDAHKFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRALSDAARQRLRAIQEFTQLGS 988
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML ES+ ++ + V QI
Sbjct: 989 GYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLEESIREIRGQEIPKV--DDTQI 1046
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+N+ +P++YI ++ M A ++ L Q +YG P LL+
Sbjct: 1047 DLNLTAFIPADYIPDIDQKMSAYRAVAAAKSKE--ELTQIAAEWSDRYGNLPVPANQLLR 1104
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMM 781
+ ++++A +G ++I K V ++T M + + ++
Sbjct: 1105 VMELKQLAKQLGFSRIKPENKQHVVLETPMEEPAWNLL 1142
>gi|427721233|ref|YP_007069227.1| transcription-repair coupling factor [Calothrix sp. PCC 7507]
gi|427353669|gb|AFY36393.1| transcription-repair coupling factor [Calothrix sp. PCC 7507]
Length = 1155
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 302/690 (43%), Positives = 435/690 (63%), Gaps = 15/690 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP LR GDYVVH+ GIGKFV ++ D T +Y+ ++YADG+ ++ Q
Sbjct: 477 SKQVDPNKLRQGDYVVHRSHGIGKFVKLESLTINDETR--DYLVVQYADGLLRVAADQVG 534
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ + K P L K++ AWE K K + AI+K+ DL++LY R +Q+ Y
Sbjct: 535 S-LSRFRATGD-KAPE-LHKMTGK-AWENTKNKVRKAIKKLAFDLLKLYAARSQQQGFTY 590
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P++ P E FPY+PT DQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 591 PQDMPWQEEMEDSFPYQPTTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 649
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+AGKQ +LAPT +L +QH+ + ERF+ YP + VGLL+RF++ E+ + +
Sbjct: 650 FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-VNVGLLNRFRTAEERRDIQKRLAT 708
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+++VGTH LLG V + +LGLLVVDEEQRFGV QKEKI S K +DVLTLSATPIPR
Sbjct: 709 GELDVVVGTHQLLGKGVTFRDLGLLVVDEEQRFGVNQKEKIKSLKTQLDVLTLSATPIPR 768
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PIKTHL+ + E + +AI+ ELDRGGQVFYV+PR++G
Sbjct: 769 TLYMSLSGIREMSLITTPPPSRRPIKTHLAQMNPESIRTAIRQELDRGGQVFYVVPRVEG 828
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ P A+AHGQ QLE TM F G IL+CT I+ESGLDI N
Sbjct: 829 IEETTTKLRETIPSARFAVAHGQMDEGQLESTMLTFNNGDADILVCTTIIESGLDIPRVN 888
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D +FGL+QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG
Sbjct: 889 TILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPQQRALSDAARQRLRAIQEFTQLGS 948
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML ES+ ++ + V QI
Sbjct: 949 GYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLEESIREIRGQEIPQV--SDTQI 1006
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+N+ +P++YI L+ M A ++ L Q +YG P LL+
Sbjct: 1007 DLNLTAFIPADYILDLDQKMSAYRAVAAAKSKE--ELTQIGVDWSDRYGAIPVPASQLLR 1064
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
+ ++++A +G ++I K + ++T M + + ++ ++ + R+ + ++
Sbjct: 1065 VMELKQLAKKLGFSRIKPENKQHIILETPMEEPAWNLLAANLPENL-RSRFVYSPGKVTV 1123
Query: 804 ELLLELPREQLLNWIFQCLAELYASLPALI 833
L + ++ L + ++ +LP +
Sbjct: 1124 RGLAVMKADKQLQSLIDAFGKMQGALPEAV 1153
>gi|298492665|ref|YP_003722842.1| transcription-repair coupling factor ['Nostoc azollae' 0708]
gi|298234583|gb|ADI65719.1| transcription-repair coupling factor ['Nostoc azollae' 0708]
Length = 1166
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 309/692 (44%), Positives = 431/692 (62%), Gaps = 15/692 (2%)
Query: 144 GFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQ 203
S +VD LR GD+VVH+ GIGKFV ++ + T +Y+ I+YADG+ K+ +
Sbjct: 486 AISKQVDTNKLRPGDFVVHRSHGIGKFVELESLTINNETR--DYLVIQYADGLLKVAADK 543
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L R+ + + L K++ AW+ K K + AI+K+ VDL++LY R +Q+
Sbjct: 544 VGS-LSRFRTSGD--QTPALHKMTGK-AWDNTKNKVRKAIKKLAVDLLKLYAARSQQQGF 599
Query: 264 PYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
YP + P E FPY+ T DQ KA DV+RD+ E E PMDRL+CGDVGFGKTEVA+R
Sbjct: 600 AYPADMPWQEEMEDSFPYQATTDQLKAVQDVKRDM-ESERPMDRLVCGDVGFGKTEVAIR 658
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
AIF V+AGKQ VLAPT +L +QH+ + ERFS YP + VGLL+RF+S EK +
Sbjct: 659 AIFKAVTAGKQVAVLAPTTILTQQHYHTIKERFSPYP-VNVGLLNRFRSAEEKRNIQKRL 717
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
G L+I+VGTH LLG V + +LGLLV+DEEQRFGV QKEKI S K VDVLTLSATPI
Sbjct: 718 ATGELDIVVGTHQLLGKGVQFRDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPI 777
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTLY++L+G R+ SLI+TPPP R PI+THL+ + E V SAI+ ELDRGGQVFYV+PR+
Sbjct: 778 PRTLYMSLSGIREMSLITTPPPTRRPIQTHLAPLNPEIVRSAIRQELDRGGQVFYVVPRV 837
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+G+EE L++ PG AIAHGQ +LE TM F IL+CT I+ESGLDI
Sbjct: 838 EGIEETTANLREMIPGGRFAIAHGQMEESELESTMLTFGNNDADILVCTTIIESGLDIPR 897
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NTI+++D +FGLAQLYQLRGRVGRA +AHA+LFY + LSD A RL A++E +L
Sbjct: 898 VNTILIEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYHKQRELSDAARLRLRAIQEFTQL 957
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 682
G G+QLA +DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V
Sbjct: 958 GSGYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPKV--DDT 1015
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
QID+N+ +PS YI ++ M A ++ L +YG P L
Sbjct: 1016 QIDLNLTAFIPSTYITDIDQKMSAYRAVATAKSKE--ELKSIAAEWTDRYGTIPVPANQL 1073
Query: 743 LKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQI 801
L+ + ++++A +IG ++I K + ++T M + + ++ +++T E RN + ++
Sbjct: 1074 LRVMELKQLARNIGFSRIKPENKQHIVLETPMEEPAWNLLAENLT-ETMRNRFVYSSGKV 1132
Query: 802 KAELLLELPREQLLNWIFQCLAELYASLPALI 833
A L L EQ L + ++ ++P +
Sbjct: 1133 TARGLGVLKAEQQLQTLIDAFGKMQGAIPEAV 1164
>gi|428315581|ref|YP_007113463.1| transcription-repair coupling factor [Oscillatoria nigro-viridis PCC
7112]
gi|428239261|gb|AFZ05047.1| transcription-repair coupling factor [Oscillatoria nigro-viridis PCC
7112]
Length = 1190
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 305/688 (44%), Positives = 444/688 (64%), Gaps = 17/688 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S +VDP L GDYVVH++ G+GKF+ + + + +++ EY+ I+YADG ++ Q
Sbjct: 513 SKQVDPNKLSPGDYVVHRQHGVGKFIKLERLTIDRETR---EYLLIQYADGTLRVAADQL 569
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
L R+ + K P L+KL+ T WE+ KTK + A++K+ VDL+ LY R KQ
Sbjct: 570 G-ALSRFRTVGD-KVP-DLNKLTGQT-WEKTKTKVRKAVKKLAVDLLNLYAKRAKQTGYA 625
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+P + P E FPY+PTPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVALRA
Sbjct: 626 FPPDMPWQQELEDSFPYQPTPDQLKATQDVKRDM-EGDRPMDRLVCGDVGFGKTEVALRA 684
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF V+AGKQ +LAPT +L +QH+ +SERFS YP I+VGLL+RF+++ E+ E +
Sbjct: 685 IFKAVTAGKQVALLAPTTILTQQHYHTLSERFSPYP-IEVGLLNRFRTETERREIHKRLA 743
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L++IVGT ++L + + +LGLLVVDEEQRFGVKQKE I + K VDVLTL+ATPIP
Sbjct: 744 TGELDVIVGTQAVLSKAIKFRDLGLLVVDEEQRFGVKQKEAIKALKTEVDVLTLTATPIP 803
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLISTPPP R PI+THL+ ++ E V SAI+ ELDRGGQVFYV+PRI+
Sbjct: 804 RTLYMSLSGIREMSLISTPPPSRRPIQTHLAPYNPETVRSAIRQELDRGGQVFYVVPRIE 863
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G++E LQ+ P IAIAHGQ + +LE M F+ IL+CT I+ESGLDI
Sbjct: 864 GIDELAVQLQEMVPSARIAIAHGQMEASELESIMLTFSAAEFDILVCTTIIESGLDIPRV 923
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D Q+FGL QLYQLRGRVGRA +AHA+LFYP ++ LSD A +RL A++E +LG
Sbjct: 924 NTILIEDAQKFGLGQLYQLRGRVGRAGIQAHAWLFYPKQNQLSDAARQRLRAIQEFAQLG 983
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V + Q
Sbjct: 984 SGYQLAVRDMEIRGSGDVLGTEQSGQMEAIGFDLYAEMLEEAIREIKGQEIPKV--EDAQ 1041
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ + +P++YI L+ M A + L Q +YG P + L+
Sbjct: 1042 IDLTLTAFIPADYIADLDQKMSAYRSVASANTPE--ELQQIQADWCDRYGSIPLPAQQLI 1099
Query: 744 KKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 802
+ + ++++A IG ++I K + ++T M + + ++ ++ + R+ + ++
Sbjct: 1100 RVVELKQIAKKIGFSRIKPENKQHIVLETAMEEPAWNLLKANLPEHL-RSRFVYSKGKVT 1158
Query: 803 AELLLELPREQLLNWIFQCLAELYASLP 830
+ L ++ L+ + L ++ +LP
Sbjct: 1159 IRGMAVLTAQKQLDNLIDWLGKMQGALP 1186
>gi|427723269|ref|YP_007070546.1| transcription-repair coupling factor [Leptolyngbya sp. PCC 7376]
gi|427354989|gb|AFY37712.1| transcription-repair coupling factor [Leptolyngbya sp. PCC 7376]
Length = 1160
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 306/690 (44%), Positives = 443/690 (64%), Gaps = 26/690 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S VD LR GDYVVHK G+G+F +K +V + EY+ I+YADG+ ++P
Sbjct: 485 SKTVDVNKLRPGDYVVHKSHGVGRF--LKMEVLQSR----EYLAIKYADGLLRIPADSLD 538
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L RY RP+ L KL AWE+ K K + +++K+ VDL+++Y R + K Y
Sbjct: 539 -TLSRYR-KTAKGRPQ-LHKLGGK-AWEKTKNKVRKSVKKLAVDLLKIYAQRAEMKGTIY 594
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+ TPDQ KA D++RDL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 595 PVDAPWQQEMEDSFPYQATPDQLKAVQDIKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAI 653
Query: 325 FCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F VV++G KQ +LAPT +L +QH+ + ERFS YP I +GLL+RF++ +E++E + +K
Sbjct: 654 FKVVTSGHKQVALLAPTTILTQQHYHTLKERFSPYP-INIGLLNRFRTASEQKEIMQRLK 712
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G L+I+VGT LLG V + +LG+LVVDEEQRFGV QKEKI + K VDVLTLSATPIP
Sbjct: 713 NGELDIVVGTQKLLGKEVKFKDLGMLVVDEEQRFGVNQKEKIKAMKTKVDVLTLSATPIP 772
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PI+TH+S + E + +A++ ELDRGGQ+FYV+PR++
Sbjct: 773 RTLYMSLSGIREMSLITTPPPSRRPIQTHVSRYQSEAIRTALRNELDRGGQIFYVVPRVE 832
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE L++ P +AIAHGQ LE TM F+ G IL+CT IVESGLDI
Sbjct: 833 GIEEIAGQLREMIPSARVAIAHGQMNESDLEATMLTFSNGEADILLCTTIVESGLDIPRV 892
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTIIV+D Q+FGL+QLYQLRGRVGR+ +AHA+L YP K L+++A +RL AL+E +LG
Sbjct: 893 NTIIVEDSQKFGLSQLYQLRGRVGRSGIQAHAWLLYPSKGELTEKARKRLRALQEFSQLG 952
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G DL+ +ML E +S++ + V Q
Sbjct: 953 SGYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFDLYMDMLQECISEIRGQEIPQV--DDCQ 1010
Query: 684 IDININPRLPSEYINHLENPME---MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
+D+ + +P YI E ++ ++ A E+ MQ +YGK P S+E
Sbjct: 1011 VDLKLTAFIPGNYITDTEQKLDAYRLITNANSKPER-----MQIASEWTERYGKLPSSVE 1065
Query: 741 ILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGD 799
LL+ + ++ +A +G ++I GK + ++T M + +K++ + + +H + +
Sbjct: 1066 QLLQVIELKSIAKSLGFSRIKPEGKQNILLETPMEEPAWKLLEEKLPKHLH-SRFVYTPK 1124
Query: 800 QIKAELLLELPREQLLNWIFQCLAELYASL 829
++ L + +Q L+ + Q L + +L
Sbjct: 1125 KVTVRGLGTIKPQQQLDNLIQWLGMMQGAL 1154
>gi|427711555|ref|YP_007060179.1| transcription-repair coupling factor Mfd [Synechococcus sp. PCC 6312]
gi|427375684|gb|AFY59636.1| transcription-repair coupling factor Mfd [Synechococcus sp. PCC 6312]
Length = 1154
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 302/647 (46%), Positives = 426/647 (65%), Gaps = 14/647 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VD L+ GDYVVH++ GIG+F +K + S EY+ I+YADG+ ++ Q +
Sbjct: 474 SKQVDVNKLQPGDYVVHRQHGIGRF--LKLEPLSISHETREYLVIQYADGVLRIAADQFN 531
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R +T P L+KLS AWE+ K K + AI+K+ VDL++LY R +Q+ Y
Sbjct: 532 -TLSRLRTGQDT--PPQLNKLSGQ-AWEKTKQKVRKAIKKVAVDLLQLYAQRAQQQGFRY 587
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PTPDQ KA DV++D+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 588 PPDQPWQVEMEDSFPYQPTPDQLKATQDVKQDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 646
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F ++AGKQ VLAPT +L +QH+ + ERF+ YP I VGLL+RF++ E++ L +
Sbjct: 647 FKAITAGKQVAVLAPTTILTQQHYHTLKERFAPYP-IHVGLLNRFRTGEERKNILQRLVT 705
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+++VGTH LLG V + +LGLLV+DEEQRFGV QKEKI S K +DVLTLSATPIPR
Sbjct: 706 GELDVVVGTHQLLGKGVNFRDLGLLVIDEEQRFGVNQKEKIKSLKTQLDVLTLSATPIPR 765
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY+AL+G R+ S+I+TPPP R PI+THLS + E + SAI+ ELDRGGQVFYV+PR+ G
Sbjct: 766 TLYMALSGVREMSVITTPPPSRRPIQTHLSPYDLEAIRSAIRQELDRGGQVFYVVPRVAG 825
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE LQ PG I +AHGQ +LE TM F +IL+CT I+ESGLDI N
Sbjct: 826 IEEVAGKLQMMVPGARILVAHGQMQEGELESTMLGFFNAEAEILVCTTIIESGLDIPRVN 885
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+V+D +FGLAQLYQLRGRVGRA +AHA+LFYP + L+++A RL A++E +LG
Sbjct: 886 TILVEDAHKFGLAQLYQLRGRVGRAGIQAHAWLFYPRQESLTEEARARLRAIQEFTQLGS 945
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q G + +G DL+ EML E+++++ + +V + QI
Sbjct: 946 GYQLAMRDMEIRGVGNLLGAEQHGQMDAIGFDLYVEMLEEAIAEIRGQEIPTV--EDTQI 1003
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+++ +P++YI +E M +A QD L Q L +YG P + L++
Sbjct: 1004 DLSVTAFIPADYIPDMEQKMSTYRAI--SASQDGLALKQVLLDLTDRYGVPPAPVLQLIR 1061
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVH 790
+ +++MA +G ++I K V ++T M + + ++ ++ + +
Sbjct: 1062 VVELKQMAKKLGFSRIRPESKQHVILETPMAEPAWNVLASNLPTHLQ 1108
>gi|428298679|ref|YP_007136985.1| transcription-repair coupling factor [Calothrix sp. PCC 6303]
gi|428235223|gb|AFZ01013.1| transcription-repair coupling factor [Calothrix sp. PCC 6303]
Length = 1176
Score = 563 bits (1452), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/682 (45%), Positives = 433/682 (63%), Gaps = 15/682 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VD LR GDYVVH+ G+GKFV ++ D T +Y+ ++YADG+ ++ Q
Sbjct: 497 SKQVDLNKLRPGDYVVHRNHGLGKFVKLESLTISDETR--DYLVVQYADGLLRVAADQVG 554
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ + K P L+K++ WE K + + AI+K+ VDL++LY R KQ+ +
Sbjct: 555 -ALSRFRT-SANKNPE-LNKMTGKV-WENTKNRVRKAIKKLAVDLLKLYAARAKQEGFAF 610
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P++ P E FPY+ TPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 611 PEDMPWQQELEDSFPYQATPDQLKATQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 669
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+AGKQ +LAPT +L +QH+ + ERFS YP + VGLL+RF+S AE+ E L +
Sbjct: 670 FKAVTAGKQVALLAPTTILTQQHYHTIKERFSPYP-VNVGLLNRFRSPAERREILKRLAS 728
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+I+VGTH LL + LGLLVVDEEQRFGV QKEKI S K VDVLTLSATPIPR
Sbjct: 729 GDLDIVVGTHQLLSKEISIKELGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 788
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PIKTHL+ + E + +A++ ELDRGGQVFYV+PR++G
Sbjct: 789 TLYMSLSGIREMSLITTPPPSRRPIKTHLAPRNPETIRAALRQELDRGGQVFYVVPRVEG 848
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ G IAIAHGQ QLE TM F+ G IL+CT I+ESGLDI N
Sbjct: 849 IEETAIKLREIVGGARIAIAHGQMDESQLESTMLTFSNGDADILVCTTIIESGLDIPRVN 908
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D +FGLAQLYQLRGRVGRA +AHA+LFYP + LS+ A +RL A++E +LG
Sbjct: 909 TILIEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPQQRTLSEAARQRLRAIQEFTQLGS 968
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +D IRG G + G +Q+G + +G DL+ EML E++ ++ + V QI
Sbjct: 969 GYQLAMRDAEIRGVGNLLGAEQSGQLDVIGFDLYMEMLEEAIREIRGQEIPKV--DDTQI 1026
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+ + +PS YI + M AA + + LM + +YGK P LL+
Sbjct: 1027 DLKLTAFIPSNYIPDADQKMSAYRAV--AAAKSVDELMLISLEWNDRYGKIPTPANQLLR 1084
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
+ ++++A IG ++I K V ++T M + + ++ ++T + R+ + ++
Sbjct: 1085 VMELKQLAKKIGFSRIKPEAKQHVALETPMEEPAWNLLAANLTDNM-RSRFVYSPGKVIV 1143
Query: 804 ELLLELPREQLLNWIFQCLAEL 825
L L +Q L + A++
Sbjct: 1144 RGLAVLKADQQLKTLIDAFAKM 1165
>gi|119484480|ref|ZP_01619097.1| Transcription-repair coupling factor [Lyngbya sp. PCC 8106]
gi|119457954|gb|EAW39077.1| Transcription-repair coupling factor [Lyngbya sp. PCC 8106]
Length = 1147
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 298/653 (45%), Positives = 428/653 (65%), Gaps = 20/653 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP LR GDYVVH++ GIGKF+ ++ + T +Y+ ++Y DG+ ++ Q
Sbjct: 458 SKQVDPNKLRPGDYVVHRQHGIGKFLKLESLTINNETR--DYLVVQYGDGLLRVAADQVG 515
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ K P+ L+KLS + WE+ K K + AI+K+ VDL++LY R +Q Y
Sbjct: 516 -TLSRFR-STGAKVPQ-LNKLSGKS-WEKTKNKVQKAIKKLAVDLLKLYAQRAQQTGYNY 571
Query: 266 P-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P P E FPY+PTPDQ K+ DV+RD+ E E PMDRL+CGDVGFGKTEV +RAI
Sbjct: 572 PIDTPWQQELEDSFPYQPTPDQLKSTQDVKRDM-EAERPMDRLVCGDVGFGKTEVGIRAI 630
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+AGKQ LAPT +L +QH+ + ERF+ YP I++ LL+RF++ +EK E +
Sbjct: 631 FKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYP-IEIALLNRFRTTSEKREIQQRLTT 689
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++IIVGTHS+L + + +LGLLVVDEEQRFGV QKEKI + K VDVLTL+ATPIPR
Sbjct: 690 GEIDIIVGTHSILSKTIQFKDLGLLVVDEEQRFGVNQKEKIKTLKTHVDVLTLTATPIPR 749
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY+AL+G R+ SLI+TPPP R PIKTHLS ++ E + +AI+ ELDRGGQVFYV+PRI+G
Sbjct: 750 TLYMALSGIREMSLITTPPPSRRPIKTHLSPYNDETIRTAIRQELDRGGQVFYVVPRIEG 809
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE +++ P IA+AHGQ + +LE M F G +IL+CT I+ESGLDI N
Sbjct: 810 IEEKSSKIREMVPSARIAVAHGQMNAAELESIMLTFNAGEAEILVCTTIIESGLDIPRVN 869
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP----DKSLLSDQALERLAALEECR 620
TI+++D +FGLAQLYQLRGRVGR+ +AHA+LFYP ++ LSD A +RL A++E
Sbjct: 870 TILIEDAHRFGLAQLYQLRGRVGRSGVQAHAWLFYPVNADGRAALSDDARKRLRAIQEFT 929
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYK 680
+LG G+QLA +D+ IRG G I G +Q+G + +G DL+ EML ES+ ++ + V
Sbjct: 930 QLGSGYQLAMRDLEIRGAGDILGAEQSGQMDVIGFDLYTEMLEESIREIKGQEIPQV--D 987
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
QID+N+ +PS+YI ++ M E + +D L + E +YG P +
Sbjct: 988 DTQIDLNLTAFIPSDYIPDIDQKMSAYREVASCSSRD--ELARLEEDWCDRYGPIPTPAQ 1045
Query: 741 ILLKKLYVRRMAADIGITKI---YASGKMVGMKTNMNKKVFKMMIDSMTSEVH 790
L++ + ++++A +G ++I S + + ++T M + + ++ + + S +H
Sbjct: 1046 QLIRVMELKQIAKKLGFSRIKPDTESKQHILLETPMEEPAWNLLKEKLPSHLH 1098
>gi|427421913|ref|ZP_18912096.1| transcription-repair coupling factor Mfd [Leptolyngbya sp. PCC 7375]
gi|425757790|gb|EKU98644.1| transcription-repair coupling factor Mfd [Leptolyngbya sp. PCC 7375]
Length = 1168
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 306/675 (45%), Positives = 437/675 (64%), Gaps = 14/675 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S KVDP LR DYVVH+ GIG+F +K + EY+ I+YADG+ ++ Q
Sbjct: 486 SKKVDPNKLRPNDYVVHRNHGIGQF--LKLESLTIDAETREYLVIKYADGLLRVAADQMG 543
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ E KRP L+K++ AWE+ KT+ K AIQK+ VDL++LY R + + Y
Sbjct: 544 S-LSRFRASAE-KRP-ALNKMTGK-AWEKTKTRAKKAIQKVAVDLLKLYAQRSELEGFTY 599
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PTPDQ KA DV+RD+ E PMDRL+CGDVGFGKTEVA+R+I
Sbjct: 600 PVDMPWQQELEDSFPYQPTPDQLKATQDVKRDM-ESPRPMDRLVCGDVGFGKTEVAIRSI 658
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V AGKQ +LAPT +L +QH+ + ER++ YP I+VGLL+RF++ E+++ + +
Sbjct: 659 FKAVIAGKQVAMLAPTTILTQQHYHTIKERYAPYP-IQVGLLNRFRTANERKDIIQRLAT 717
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+++VGTH LLG V + +LGLLVVDEEQRFGV QKEKI + K VDVLTLSATPIPR
Sbjct: 718 GELDVVVGTHQLLGKAVKFKDLGLLVVDEEQRFGVNQKEKIKAMKTQVDVLTLSATPIPR 777
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PI THL+ EKV +AI+ ELDRGGQ+FYV+PR++G
Sbjct: 778 TLYMSLSGVREMSLITTPPPSRRPIITHLAPHDMEKVRAAIRQELDRGGQIFYVVPRVEG 837
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE +++ P + +A+AHGQ +LE TM F+ G +++CT I+ESGLDI N
Sbjct: 838 IEEIAARIREMIPSIRLAVAHGQMPEGELEATMLAFSNGEADLMVCTTIIESGLDIPRVN 897
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D Q+FGL+QLYQLRGRVGR+ +AHA+LF+P + LSD+A +RL A++E +LG
Sbjct: 898 TILIEDSQKFGLSQLYQLRGRVGRSGIQAHAWLFFPRQDKLSDKARKRLRAIQEFTQLGS 957
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G QQ+G + +G DL+ +ML E+++++ + V Q+
Sbjct: 958 GYQLAMRDMEIRGIGNLLGVQQSGQMEVIGFDLYMDMLQEAIAEIRGQEIPQV--DETQV 1015
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+ + +P+ YI + M + A + LMQ L ++G P ++E L+K
Sbjct: 1016 DLKLTAFIPNNYIGDTDQKMSVYRSLVAADTKR--ELMQIVTDLNDRFGTIPPAVEQLVK 1073
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
L ++++A +G KI GK V M+T M +K++ + + + + G
Sbjct: 1074 MLELKQIAKPLGFAKIKPEGKQHVVMETPMEAPAWKLLHEKVPGHLKSRFIYGSGKVTVR 1133
Query: 804 ELLLELPREQLLNWI 818
L + P +QL N I
Sbjct: 1134 GLGVMKPDKQLENLI 1148
>gi|334120261|ref|ZP_08494343.1| transcription-repair coupling factor [Microcoleus vaginatus FGP-2]
gi|333457049|gb|EGK85676.1| transcription-repair coupling factor [Microcoleus vaginatus FGP-2]
Length = 1191
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 305/688 (44%), Positives = 444/688 (64%), Gaps = 17/688 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S +VDP L GDYVVH++ G+GKF+ + + + +++ EY+ I+YADG ++ Q
Sbjct: 512 SKQVDPNKLSPGDYVVHRQHGVGKFIKLERLTIDRETR---EYLLIQYADGTLRVAADQL 568
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
L R+ + K P L+KL+ T WE+ KTK + A++K+ VDL+ LY R KQ
Sbjct: 569 G-ALSRFRTVGD-KVP-DLNKLTGQT-WEKTKTKVRKAVKKLAVDLLNLYAKRAKQTGYA 624
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+P + P E FPY+PTPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVALRA
Sbjct: 625 FPPDMPWQQELEDSFPYQPTPDQLKATQDVKRDM-EGDRPMDRLVCGDVGFGKTEVALRA 683
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF V+AGKQ +LAPT +L +QH+ +SERFS YP I+VGLL+RF+++ E+ E +
Sbjct: 684 IFKAVTAGKQVALLAPTTILTQQHYHTLSERFSPYP-IEVGLLNRFRTETERREIHKRLA 742
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L++IVGT ++L + + +LGLLVVDEEQRFGVKQKE I + K VDVLTL+ATPIP
Sbjct: 743 TGELDVIVGTQAVLSKAIKFRDLGLLVVDEEQRFGVKQKEAIKALKTEVDVLTLTATPIP 802
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLISTPPP R PI+THL+ ++ E V SAI+ ELDRGGQVFYV+PRI+
Sbjct: 803 RTLYMSLSGIREMSLISTPPPSRRPIQTHLAPYNPEVVRSAIRQELDRGGQVFYVVPRIE 862
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G++E LQ+ P IAIAHGQ + +LE M F+ IL+CT I+ESGLDI
Sbjct: 863 GIDELAAQLQEMVPSARIAIAHGQMDASELESVMLTFSAADFDILVCTTIIESGLDIPRV 922
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D Q+FGL QLYQLRGRVGRA +AHA+LFYP ++ LSD A +RL A++E +LG
Sbjct: 923 NTILIEDAQRFGLGQLYQLRGRVGRAGIQAHAWLFYPKQNKLSDAARQRLRAIQEFAQLG 982
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V + Q
Sbjct: 983 SGYQLAVRDMEIRGSGDVLGTEQSGQMEAIGFDLYAEMLEEAIREIKGQEIPKV--EDAQ 1040
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ + +P++YI L+ M A + L Q +YG P + L+
Sbjct: 1041 IDLTLTAFIPADYIADLDQKMSAYRSVASANTPE--ELQQIQADWCDRYGPIPLPAQQLI 1098
Query: 744 KKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 802
+ + ++++A IG ++I K + ++T M + + ++ ++ + R+ + ++
Sbjct: 1099 RVVELKQIAKKIGFSRIKPENKQHIVLETAMEEPAWNLLKANLPEHL-RSRFVYSKGKVT 1157
Query: 803 AELLLELPREQLLNWIFQCLAELYASLP 830
+ L ++ L+ + L ++ +LP
Sbjct: 1158 IRGMAVLTAQKQLDNLIDWLGKMQGALP 1185
>gi|443327777|ref|ZP_21056386.1| transcription-repair coupling factor Mfd [Xenococcus sp. PCC 7305]
gi|442792612|gb|ELS02090.1| transcription-repair coupling factor Mfd [Xenococcus sp. PCC 7305]
Length = 1163
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 303/676 (44%), Positives = 441/676 (65%), Gaps = 19/676 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S KVD LR GDYVVH+ GIGKF+ + ++ EY+ I+YADG+ ++P
Sbjct: 495 SQKVDLNKLRPGDYVVHRSHGIGKFIEL------ETLYSREYLAIKYADGLLRVPADSLD 548
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
+ RY ++K L+K+SD + W + KTK + I+K+ VDL++LY R K+ Y
Sbjct: 549 -TISRYRRTGKSKP--VLNKMSDKS-WSKTKTKVRKNIKKLAVDLVKLYAKRSKRSGFAY 604
Query: 266 PK-NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P+ NP E FPY+PT DQ KA DV+ DL E + PMDRL+CGDVGFGKTEVA+R+I
Sbjct: 605 PQDNPWQKELEDSFPYQPTTDQLKAVQDVKLDL-ESDRPMDRLVCGDVGFGKTEVAVRSI 663
Query: 325 FCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V+ SA KQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF++ AEK+E + +
Sbjct: 664 FKVITSANKQVALLAPTTILTQQHYHTIKERFAPYP-INVGLLNRFRTNAEKKEIMQRLA 722
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+I+VGTH LLG V + +LG+LV+DEEQRFGV QKEKI ++K VDVLTLSATPIP
Sbjct: 723 TGELDIVVGTHQLLGKDVKFKDLGMLVIDEEQRFGVNQKEKIKAYKSQVDVLTLSATPIP 782
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHLS ++ E V SAI+ ELDRGGQ+FYV+PR++
Sbjct: 783 RTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNPEVVRSAIRNELDRGGQIFYVVPRVE 842
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE L++ P IAIAHGQ +LE TM F+ G ILICT I+ESGLDI
Sbjct: 843 GIEELGGQLREMIPSARIAIAHGQMPESELEATMLTFSNGEADILICTTIIESGLDIPRV 902
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTII++D Q+FGL+QLYQLRGRVGR+ +AHA+L YP++ L++ A +RL AL+E +LG
Sbjct: 903 NTIIIEDAQRFGLSQLYQLRGRVGRSGIQAHAWLLYPNQQSLTETARKRLRALQEFSQLG 962
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + ++G DL+ EML E++ ++ + V + Q
Sbjct: 963 SGYQLATRDMEIRGVGNLLGAEQSGQMISIGFDLYMEMLQEAIQEIQGQEIPQV--EDTQ 1020
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+ + +P++YI+ ++ M+ + + L Q +YG+ P + L+
Sbjct: 1021 VDLKVTAFIPADYISDMDQKMDAYRSVATVSSKK--ELTQIAVDWCDRYGELPTPVVQLI 1078
Query: 744 KKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 802
+ + ++++A +G +++ GK + ++T M + + +++ + + + I
Sbjct: 1079 QVMELKQIAKPLGFSRVKPEGKQHIVLETPMAEPAWNSLLEKLPKHLRSRFIYAPNKVIV 1138
Query: 803 AELLLELPREQLLNWI 818
L + P++QL N I
Sbjct: 1139 RGLGIVKPQKQLDNLI 1154
>gi|390439008|ref|ZP_10227431.1| Transcription-repair-coupling factor [Microcystis sp. T1-4]
gi|389837572|emb|CCI31555.1| Transcription-repair-coupling factor [Microcystis sp. T1-4]
Length = 1160
Score = 560 bits (1444), Expect = e-156, Method: Compositional matrix adjust.
Identities = 310/688 (45%), Positives = 442/688 (64%), Gaps = 26/688 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI----EYVFIEYADGMAKLPV 201
S +VD LR D+VVHK GIG+F IK + Q+ + I +Y+ I+YADG+ ++P
Sbjct: 479 SVQVDVNKLRPLDFVVHKHHGIGQF--IKLEKQESTISGIVQGRDYLVIKYADGLLRVPA 536
Query: 202 KQASRM-LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
+ YR+ E + L K+S AWE K + + +I+K+ VDL+ +Y R K+
Sbjct: 537 DSVDNLSRYRHTGNQEPE----LHKISGK-AWEATKARVRKSIKKLAVDLINIYAQRAKK 591
Query: 261 KRPPYP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
YP NP E FPY+PT DQ KA DV+RDL E + PMDRL+CGDVGFGKTEV
Sbjct: 592 SGFAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEV 650
Query: 320 ALRAIFCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378
A+RAIF V+ G KQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF++ +EK++
Sbjct: 651 AIRAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDI 709
Query: 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLS 438
+ +K G L+I+VGT LL V + +LGLLV+DEEQRFGV QKEKI +FK ++DVLTLS
Sbjct: 710 VQRLKTGELDIVVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLS 769
Query: 439 ATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYV 498
ATPIPRTLY++L+G R+ SLI+TPPP R PI+THLS+++ + + +AI+ ELDRGGQVFYV
Sbjct: 770 ATPIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQVFYV 829
Query: 499 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558
LPRI+G+EE +Q PG IAI HG+ +LE TM F G IL+CT IVESGL
Sbjct: 830 LPRIEGIEEKAAAIQGMIPGARIAIGHGRMDESELETTMLAFNNGEADILVCTTIVESGL 889
Query: 559 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 618
DI NTII++D Q+FGLAQLYQLRGRVGR+ +AHA+L YP K+ L++ A ERL A++E
Sbjct: 890 DIPRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKAELTETARERLKAIQE 949
Query: 619 CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP 678
+LG G+QLA +D+ IRG G + G +Q+G + +G DL+ EML E+L ++ + V
Sbjct: 950 FTQLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALQEIQGQEIPQV- 1008
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+ QID+ + +P++YI+ E M++ A Q L Q L +YG P
Sbjct: 1009 -EDTQIDLKLTAFIPNDYISDPEQKMDVYRAIATANSQK--NLGQIAADLVDRYGGIPSP 1065
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFE 797
+ L K + ++ +A +G ++I GK + ++T M + +K++ + + + ++ +
Sbjct: 1066 VAQLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI-QSRFVYS 1124
Query: 798 GDQIKAE-LLLELPREQ---LLNWIFQC 821
Q+ L L P +Q LL+W+ +C
Sbjct: 1125 PKQVTVRGLGLVKPPQQLDSLLDWLAKC 1152
>gi|78212830|ref|YP_381609.1| transcription-repair coupling factor [Synechococcus sp. CC9605]
gi|78197289|gb|ABB35054.1| transcription-repair coupling factor [Synechococcus sp. CC9605]
Length = 1192
Score = 560 bits (1443), Expect = e-156, Method: Compositional matrix adjust.
Identities = 304/696 (43%), Positives = 445/696 (63%), Gaps = 29/696 (4%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S VDP +R GD+VVH+ GIG+F + K + D +Y+ ++YADG+ ++ Q
Sbjct: 491 SRTVDPNKMRPGDFVVHRNHGIGRFKAMEKLAMSGDIR---DYLVVQYADGILRVAADQL 547
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
L RY +ET P L+++ T AW + K + K A++K+ +DL++LY R +
Sbjct: 548 GS-LGRYRATSET--PPQLNRMGGT-AWNKAKERAKKAVRKVALDLVKLYAERQQAAGFA 603
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+P + P E FPY+PTPDQ KA DV+RD+ ER+ PMDRL+CGDVGFGKTEVA+RA
Sbjct: 604 FPTDGPWQVEMEESFPYDPTPDQLKATADVKRDM-ERQEPMDRLVCGDVGFGKTEVAIRA 662
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF ++AGKQ +LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ +E++ LD +K
Sbjct: 663 IFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTASERKSILDGLK 721
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++ +VGTH LL + LGLLVVDEEQRFGV QKEKI + VDVLTLSATPIP
Sbjct: 722 QGTIDAVVGTHQLLSKGASFQELGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIP 781
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHL++ E + SAI+ ELDRGGQVFYV+PR++
Sbjct: 782 RTLYMSLSGVREMSLITTPPPLRRPIKTHLASLDPEAMRSAIRQELDRGGQVFYVVPRVE 841
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE L++ PG+ + +AHGQ +LE M F G +++CT IVESGLDI
Sbjct: 842 GIEEVAAGLREMLPGLKLLVAHGQMAEGELENAMVAFNAGEADVMLCTTIVESGLDIPRV 901
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D +FGLAQLYQLRGRVGR+ +AHA+LFYP + LSD A +RL A++E +LG
Sbjct: 902 NTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSDTARQRLRAIQEFAQLG 961
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G QQ+G + +G DL+ EML ESL+++ + SV + Q
Sbjct: 962 SGYQLAMRDMEIRGVGNLLGVQQSGQMETIGFDLYMEMLQESLAEIQGQDIPSV--EDTQ 1019
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWC-----LMQFTESLRRQYGKEPYS 738
+D+ + +P+++I +P E + AA+ C L++ +YG P +
Sbjct: 1020 VDLPVTAFVPADWIT---DPDEKIAAYRAAAD----CLTAEALVELAAGWADRYGALPAA 1072
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG 798
+ LL+ + ++ +A G ++I + ++T M + F+++ + +H + G
Sbjct: 1073 VVSLLQLMELKLLAKRCGFSRIKPEKPNIVLETPMEEPAFRLLRQGLPQHLHGRLVYQAG 1132
Query: 799 DQIKAELLLE----LPREQLLNWIFQCLAELYASLP 830
+ I+ +++ LP E+ L + + L + A +P
Sbjct: 1133 NGIQHKVMARGLGVLPMEKQLEQLMEWLRLMAAQIP 1168
>gi|260435284|ref|ZP_05789254.1| transcription-repair coupling factor [Synechococcus sp. WH 8109]
gi|260413158|gb|EEX06454.1| transcription-repair coupling factor [Synechococcus sp. WH 8109]
Length = 1203
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 301/691 (43%), Positives = 440/691 (63%), Gaps = 19/691 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S VDP +R GD+VVH+ GIG+F + K + D +Y+ ++YADG+ ++ Q
Sbjct: 502 SRTVDPNKMRPGDFVVHRNHGIGRFKAMEKLAMSGDIR---DYLVVQYADGILRVAADQL 558
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
L RY +ET P L+++ T AW + K + K A++K+ +DL++LY R +
Sbjct: 559 GS-LGRYRATSET--PPQLNRMGGT-AWNKAKERAKKAVRKVALDLVKLYAERQQAAGFA 614
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+P + P E FPY+PTPDQ KA DV+RD+ ER+ PMDRL+CGDVGFGKTEVA+RA
Sbjct: 615 FPTDGPWQVEMEESFPYDPTPDQLKATADVKRDM-ERQEPMDRLVCGDVGFGKTEVAIRA 673
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF ++AGKQ +LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ +E++ LD +K
Sbjct: 674 IFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTASERKSILDGLK 732
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++ +VGTH LL + LGLLVVDEEQRFGV QKEKI + VDVLTLSATPIP
Sbjct: 733 QGTIDAVVGTHQLLSKGASFQELGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIP 792
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHL++ E V SAI+ ELDRGGQVFYV+PR++
Sbjct: 793 RTLYMSLSGVREMSLITTPPPLRRPIKTHLASLDPEAVRSAIRQELDRGGQVFYVVPRVE 852
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G++E L+ PG+ + +AHGQ +LE M F G +++CT IVESGLDI
Sbjct: 853 GIDEVAAGLRAMLPGLKLLVAHGQMAEGELENAMVAFNAGEADVMLCTTIVESGLDIPRV 912
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D +FGLAQLYQLRGRVGR+ +AHA+LFYP + LSD A +RL A++E +LG
Sbjct: 913 NTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSDTARQRLRAIQEFAQLG 972
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G QQ+G + +G DL+ EML ESL+++ + SV + Q
Sbjct: 973 SGYQLAMRDMEIRGVGNLLGVQQSGQMETIGFDLYMEMLQESLAEIQGQDIPSV--EDTQ 1030
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+ + +P+++I + + A + L++ S +YG P ++ LL
Sbjct: 1031 VDLPVTAFVPADWITDPDEKIAAYRAASDCLSAE--ALVELAASWADRYGALPAAVVSLL 1088
Query: 744 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
+ + ++ +A G ++I + ++T M + F+++ + +H + G I+
Sbjct: 1089 QLMELKLLAKQCGFSRIKPEKPNILLETPMEEPAFRLLRQGLPKHLHGRLIYQAGSGIQH 1148
Query: 804 ELLLE----LPREQLLNWIFQCLAELYASLP 830
+++ LP E+ L + + L + A +P
Sbjct: 1149 KVMARGIGVLPMEKQLEQLMEWLRLMAAQIP 1179
>gi|33865711|ref|NP_897270.1| transcriptional-repair coupling factor [Synechococcus sp. WH 8102]
gi|33632881|emb|CAE07692.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 8102]
Length = 1192
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 307/705 (43%), Positives = 446/705 (63%), Gaps = 23/705 (3%)
Query: 135 GDSGY--NGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIE 191
G SGY S VDP +R GD+VVH+ GIG+F + K V D +Y+ ++
Sbjct: 478 GSSGYVRRRRKAASRTVDPNKMRPGDFVVHRNHGIGRFKAMEKLAVSGDVR---DYLVVQ 534
Query: 192 YADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLM 251
YADG+ ++ Q L RY +ET P LSK+ AW + K + K A++K+ +DL+
Sbjct: 535 YADGLLRVAADQLGS-LGRYRATSET--PPQLSKMGGA-AWTKAKERAKKAVRKVAMDLV 590
Query: 252 ELYLHRLKQKRPPYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICG 310
+LY R + +P + P E FPYEPTPDQ KA DV+RD+ E+ PMDRL+CG
Sbjct: 591 KLYAERHQANGFAFPSDGPWQNELEESFPYEPTPDQLKATADVKRDM-EKAEPMDRLVCG 649
Query: 311 DVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQ 370
DVGFGKTEVA+RAIF ++AGKQ +LAPT VLA+QH+ +SERF+ YP IKV LL+RF+
Sbjct: 650 DVGFGKTEVAIRAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFR 708
Query: 371 SKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKI 430
+ +E++ L+ +K G ++ +VGTH LLG + LGLLVVDEEQRFGV QKEKI +
Sbjct: 709 TASERKTILEGLKGGTIDAVVGTHQLLGKGASFQQLGLLVVDEEQRFGVNQKEKIKVLRK 768
Query: 431 SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELD 490
VDVLTLSATPIPRTLY++L+G R+ SLI+TPPP R PIKTHL+A E V SAI+ ELD
Sbjct: 769 DVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDPEAVRSAIRQELD 828
Query: 491 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILIC 550
RGGQVFYV+PR++G+E+ L++ PG+ + +AHGQ +LE M F G +++C
Sbjct: 829 RGGQVFYVVPRVEGIEDVAAGLREMLPGLKLLVAHGQMAEGELESAMVAFNAGEADVMLC 888
Query: 551 TNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQAL 610
T IVESGLDI NTI+++D +FGLAQLYQLRGRVGR+ +AHA+LFYP LSD A
Sbjct: 889 TTIVESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNGSLSDNAR 948
Query: 611 ERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD 670
+RL A++E +LG G+QLA +DM IRG G + G +Q+G + +G DL+ EML ESL+++
Sbjct: 949 QRLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQ 1008
Query: 671 EHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLR 729
+ SV Q+D+ + +P+++I +P E + AA+ + L++
Sbjct: 1009 GQDIPSV--DDTQVDLPVTAFVPADWIT---DPDEKIAAYRAAADCRSGEALVELAAGWA 1063
Query: 730 RQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEV 789
+YG P +++ LL+ + ++ +A G+ +I + ++T M + F+++ + +
Sbjct: 1064 DRYGALPAAVQSLLQLMELKLLAKRCGVARIKPEKPNIVLETPMEEPAFRLLRQGLPQHL 1123
Query: 790 HRNSLTFEGDQIKAELLLE----LPREQLLNWIFQCLAELYASLP 830
H + G ++ +++ LP ++ L + + L + A +P
Sbjct: 1124 HGRLVYQSGKALQHKVMARGLGVLPMDKQLEQLMEWLRLMAAQIP 1168
>gi|428772136|ref|YP_007163924.1| transcription-repair coupling factor [Cyanobacterium stanieri PCC
7202]
gi|428686415|gb|AFZ46275.1| transcription-repair coupling factor [Cyanobacterium stanieri PCC
7202]
Length = 1151
Score = 559 bits (1441), Expect = e-156, Method: Compositional matrix adjust.
Identities = 310/684 (45%), Positives = 445/684 (65%), Gaps = 25/684 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VD LR D+VVHK GIG+F+ + ++ EY+ I+YADG+ ++P + S
Sbjct: 484 SKQVDLDKLRPKDFVVHKHHGIGQFIDL------ETLASREYLVIQYADGILRVPAEN-S 536
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
+L RY + K P+ + KL+ W K K + +I+K+ VDL++LY R K Y
Sbjct: 537 EVLSRYR-AIDGKHPK-IHKLAGK-EWNNIKNKARRSIKKLAVDLVKLYATRAKLTGFVY 593
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P++ P E FPYEPTPDQ KA DV+ DL E + PMDRLICGDVGFGKTEVA+R I
Sbjct: 594 PEDSPWQRELEDSFPYEPTPDQLKATQDVKIDL-ESDRPMDRLICGDVGFGKTEVAIRTI 652
Query: 325 FCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V++AG KQ LAPT +L++QH+ + ERFS YP I +GLL+RF+S +E++E + +
Sbjct: 653 FKVITAGHKQVAFLAPTTILSQQHYHTLLERFSPYP-INIGLLNRFRSPSERKEIIQKLA 711
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+I+VGTH LL + Y +LGLLV+DEEQRFGV QKEKI + K SVDVLTLSATPIP
Sbjct: 712 TGELDIVVGTHQLLSKTIKYKDLGLLVIDEEQRFGVNQKEKIKAMKTSVDVLTLSATPIP 771
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++++G R+ SLI+TPPP R PIKTH+ AF++ + +AI+ ELDRGGQ+FYVLPRI+
Sbjct: 772 RTLYMSISGVREMSLITTPPPSRRPIKTHIGAFNEGIIRTAIRNELDRGGQIFYVLPRIE 831
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+++ ++ LQ P + I +AHGQ +LE TM F+ G +LICT I+ESGLDI
Sbjct: 832 GMDKVVEMLQNMIPSLRIGVAHGQMPEGELESTMLGFSNGDADLLICTTIIESGLDIPRV 891
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTIIV+D Q+FGLAQLYQLRGRVGR+ +AHA+L YPD LS++A +RL AL+E +LG
Sbjct: 892 NTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPDDVSLSEKARKRLRALQEFSQLG 951
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+ LA +DM IRG G++ G +Q+G + +G +++ EML E++ ++ + +V + Q
Sbjct: 952 SGYHLAMRDMEIRGVGSLLGAEQSGQMEAIGFEMYTEMLKEAIDEIQGQEIPTV--EDTQ 1009
Query: 684 IDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
ID+N+ +P+ YI +E M+ A + E+D+ Q +YG+ P + L
Sbjct: 1010 IDLNLTAFIPNRYIADMEQKMDAYRAVATVSCERDV---KQIERDWLDRYGEIPEPAKQL 1066
Query: 743 LKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQI 801
L+ ++ A IG ++I GK + ++T M + + ++++ + S +H + + I
Sbjct: 1067 LQVADLKYKAKSIGFSRIKPEGKQNIILETPMLEPAWNLLLEKLPSHLHSRFVYAKKKVI 1126
Query: 802 KAELLLELPREQ---LLNWIFQCL 822
L P +Q L+NW F CL
Sbjct: 1127 VRGLGAMKPTQQLETLINW-FACL 1149
>gi|318041677|ref|ZP_07973633.1| transcription-repair coupling factor [Synechococcus sp. CB0101]
Length = 1185
Score = 559 bits (1441), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/685 (43%), Positives = 437/685 (63%), Gaps = 23/685 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S VDP +R GD+VVH+ GIGKF+ + K + +S +Y+ ++YADG+ ++ Q
Sbjct: 484 SRTVDPNKMRPGDFVVHRNHGIGKFIKLEKLAISGESR---DYLVVQYADGLLRVAADQL 540
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
L RY T++P L+++ T AW + K + + A++K+ +DL++LY R +
Sbjct: 541 GS-LGRYR--ATTEQPPDLNRMGGT-AWSKAKERARKAVRKVALDLVKLYAERHQAAGFC 596
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+P + P +E FPYEPTPDQ KA DV+RD+ E+ PMDRL+CGDVGFGKTEVA+RA
Sbjct: 597 FPADGPWQSELEESFPYEPTPDQLKAIADVKRDM-EKPQPMDRLVCGDVGFGKTEVAIRA 655
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF V+AGKQ +LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ E++ + +
Sbjct: 656 IFKAVTAGKQVAMLAPTTVLAQQHWRSLSERFAPYP-IKVSLLNRFRTAGERKAIQEGLG 714
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++++VGTH LLG + LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIP
Sbjct: 715 EGTVDVVVGTHQLLGKGTAFKQLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIP 774
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHL+A +E V SAI+ ELDRGGQ+FYV+PR++
Sbjct: 775 RTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDEEAVRSAIRQELDRGGQIFYVVPRVE 834
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+E+ + L+ PG+ + +AHGQ +LE M F G +++CT IVESGLDI
Sbjct: 835 GIEDVAEGLRLMVPGLRLLVAHGQMAEGELESAMVAFNAGEADLMLCTTIVESGLDIPRV 894
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D +FGLAQLYQLRGRVGR+ +AHA+LFYP + LS+ A +RL A++E +LG
Sbjct: 895 NTILIEDAHKFGLAQLYQLRGRVGRSGIQAHAWLFYPGDASLSEAARQRLRAIQEFAQLG 954
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G DL+ EML ESL+++ + +V Q
Sbjct: 955 SGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPAV--DDTQ 1012
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ I +P ++I + M A D L+Q +YG P + LL
Sbjct: 1013 IDLPITAFIPGDWIADNDEKMAAYRAAADCGSPD--SLLQLATDWVDRYGAIPAPVISLL 1070
Query: 744 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
+ + ++ +A G ++I + ++T M + F+++ + +H + G +
Sbjct: 1071 QLMELKLLAKRCGFSRIKPEKPNIALETPMEEPAFRLLRQGLPQHLHGRLMFQAGSGTTS 1130
Query: 804 ELL--------LELPREQLLNWIFQ 820
++L +E E+L+NW+ Q
Sbjct: 1131 KVLARGLGVLPMEKQVEELMNWLKQ 1155
>gi|422305058|ref|ZP_16392395.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9806]
gi|389789731|emb|CCI14344.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9806]
Length = 1169
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 305/693 (44%), Positives = 443/693 (63%), Gaps = 22/693 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI----EYVFIEYADGMAKLPV 201
S +VD LR D+VVHK GIG+F IK + Q+ + + +Y+ I+YADG+ ++P
Sbjct: 488 SVQVDVNKLRPLDFVVHKHHGIGQF--IKLEKQESTISGVVQGRDYLVIKYADGLLRVPA 545
Query: 202 KQASRM-LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
+ YR+ E + L K+S AWE K + + +++K+ VDL+ +Y R ++
Sbjct: 546 DSVDNLSRYRHTGNQEPE----LHKISGK-AWEATKARVRKSVKKLAVDLINIYAQRAQK 600
Query: 261 KRPPYP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
YP NP E FPY+PT DQ KA DV+RDL E + PMDRL+CGDVGFGKTEV
Sbjct: 601 SGFAYPVDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEV 659
Query: 320 ALRAIFCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378
A+RAIF V+ G KQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF++ +EK++
Sbjct: 660 AIRAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDI 718
Query: 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLS 438
+ +K G L+I+VGT LL V + +LGLLV+DEEQRFGV QKEKI +FK ++DVLTLS
Sbjct: 719 VQRLKTGELDIVVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLS 778
Query: 439 ATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYV 498
ATPIPRTLY++L+G R+ SLI+TPPP R PI+THLS+++ + + +AI+ ELDRGGQ+FYV
Sbjct: 779 ATPIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDAIRTAIRNELDRGGQIFYV 838
Query: 499 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558
+PRI+G+EE +Q PG IAI HG+ +LE TM F G IL+CT IVESGL
Sbjct: 839 VPRIEGIEEKAAAIQGMIPGARIAIGHGRMDESELETTMLAFNNGEADILVCTTIVESGL 898
Query: 559 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 618
DI NTII++D Q+FGLAQLYQLRGRVGR+ +AHA+L YP K+ L++ A ERL A++E
Sbjct: 899 DIPRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKAELTETARERLKAIQE 958
Query: 619 CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP 678
+LG G+QLA +D+ IRG G + G +Q+G + +G DL+ EML E+L ++ + V
Sbjct: 959 FTQLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV- 1017
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+ QID+ + +P++YI+ LE M++ A Q L Q L +YG P
Sbjct: 1018 -EDTQIDLKLTAFIPNDYISDLEQKMDVYRAIATANSQK--NLGQIAADLVDRYGAIPAP 1074
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFE 797
+ L K + ++ +A +G ++I GK + ++T M + +K++ + + + ++ +
Sbjct: 1075 VAQLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI-QSRFVYS 1133
Query: 798 GDQIKAELLLELPREQLLNWIFQCLAELYASLP 830
Q+ L + Q L+ + + LA+ LP
Sbjct: 1134 PKQVTVRGLGTVKPPQQLDSLLEWLAKCKDGLP 1166
>gi|78184749|ref|YP_377184.1| transcription-repair coupling factor [Synechococcus sp. CC9902]
gi|78169043|gb|ABB26140.1| Transcription-repair coupling factor [Synechococcus sp. CC9902]
Length = 1192
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 297/684 (43%), Positives = 436/684 (63%), Gaps = 25/684 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S VDP +R GD+VVH+ GIG+F + K + D +Y+ ++YADG+ ++ Q
Sbjct: 491 SRTVDPNKMRPGDFVVHRNHGIGRFKAMDKLALSGDVR---DYLVVQYADGILRVAADQL 547
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
L RY +E+ P LS++ AW + K + K A++K+ +DL++LY R +
Sbjct: 548 GS-LGRYRATSES--PPQLSRMGGA-AWTKAKDRAKKAVRKVALDLVKLYAERQQSNGFA 603
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+P + P E FPYEPTPDQ K+ DV+RD+ ER PMDRL+CGDVGFGKTEVA+RA
Sbjct: 604 FPPDGPWQTELEESFPYEPTPDQLKSTTDVKRDM-ERAEPMDRLVCGDVGFGKTEVAIRA 662
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF ++AGKQ +LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ E++ L+ +K
Sbjct: 663 IFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTTTERKSILEGLK 721
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++ +VGTH LL + LGLLVVDEEQRFGV QKEKI + VDVLTLSATPIP
Sbjct: 722 QGTIDAVVGTHQLLSKSTSFQQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIP 781
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHL++ E V SAI+ ELDRGGQVFYV+PR++
Sbjct: 782 RTLYMSLSGVREMSLITTPPPLRRPIKTHLASLDPEAVRSAIRQELDRGGQVFYVVPRVE 841
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+E+ + L+ PG+ + +AHGQ +LE M F G +++CT IVESGLDI
Sbjct: 842 GIEDVANGLRTMLPGLKLLVAHGQMAEGELESAMVAFNAGEADVMLCTTIVESGLDIPRV 901
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D +FGLAQLYQLRGRVGR+ +AHA+LFYP + LSD A +RL A++E +LG
Sbjct: 902 NTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSDNARQRLRAIQEFAQLG 961
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G DL+ EML ESL+++ + SV Q
Sbjct: 962 SGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPSV--DDTQ 1019
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYGKEPYSMEIL 742
+D+ + +P+++I +P E + AA+ L++ ++G P +++ L
Sbjct: 1020 VDLPVTAFVPADWIT---DPDEKIAAYRAAADCTSSEALVELAAGWADRFGAIPAAVQSL 1076
Query: 743 LKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 802
L+ + ++ +A G ++I + ++T M + F+++ + +H + G ++
Sbjct: 1077 LQLMELKMLAKRCGFSRIKPEKPNIVLETPMEEPAFRLLRQGLPQHLHGRFVYQPGSGLQ 1136
Query: 803 AELL--------LELPREQLLNWI 818
+ L +E EQL++W+
Sbjct: 1137 HKALARGLGVLPMEKQLEQLMDWL 1160
>gi|425468299|ref|ZP_18847328.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9701]
gi|389885028|emb|CCI34709.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9701]
Length = 1160
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 306/693 (44%), Positives = 443/693 (63%), Gaps = 22/693 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI----EYVFIEYADGMAKLPV 201
S +VD LR D+VVHK GIG+F IK + Q+ + I +Y+ I+YADG+ ++P
Sbjct: 479 SVQVDVNKLRPLDFVVHKHHGIGQF--IKLEKQESTISGIVQGRDYLVIKYADGLLRVPA 536
Query: 202 KQASRM-LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
+ YR+ E + L K+S AWE K + + +++K+ VDL+ +Y R ++
Sbjct: 537 DSVDNLSRYRHTGNQEPE----LHKISGK-AWEATKARVRKSVKKLAVDLINIYAQRSQK 591
Query: 261 KRPPYP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
YP NP E FPY+PT DQ KA DV+RDL E + PMDRL+CGDVGFGKTEV
Sbjct: 592 SGFAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEV 650
Query: 320 ALRAIFCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378
A+RAIF V+ G KQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF++ +EK++
Sbjct: 651 AIRAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDI 709
Query: 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLS 438
+ +K G L+I+VGT LL V + +LGLLV+DEEQRFGV QKEKI +FK ++DVLTLS
Sbjct: 710 VQRLKTGELDIVVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLS 769
Query: 439 ATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYV 498
ATPIPRTLY++L+G R+ SLI+TPPP R PI+THLS+++ + + +AI+ ELDRGGQ+FYV
Sbjct: 770 ATPIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQIFYV 829
Query: 499 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558
+PRI+G+EE +Q PG IAI HG+ +LE TM F G IL+CT IVESGL
Sbjct: 830 VPRIEGIEEKAAAIQGMIPGARIAIGHGRMDESELETTMLAFNNGEADILVCTTIVESGL 889
Query: 559 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 618
DI NTII++D Q+FGLAQLYQLRGRVGR+ +AHA+L YP K+ L++ A ERL A++E
Sbjct: 890 DIPRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKAELTETARERLKAIQE 949
Query: 619 CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP 678
+LG G+QLA +D+ IRG G + G +Q+G + +G DL+ EML E+L ++ + V
Sbjct: 950 FTQLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV- 1008
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+ QID+ + +P++YI+ LE M++ A Q L Q L +YG P
Sbjct: 1009 -EDTQIDLKLTAFIPNDYISDLEQKMDVYRAIATANSQK--ALGQIAADLVDRYGAIPAP 1065
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFE 797
+ L K + ++ +A +G ++I GK + ++T M + +K++ + + + ++ +
Sbjct: 1066 VAQLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI-QSRFVYS 1124
Query: 798 GDQIKAELLLELPREQLLNWIFQCLAELYASLP 830
Q+ L + Q L+ + + LA+ LP
Sbjct: 1125 PKQVTVRGLGTVKPPQQLDSLLEWLAKCKDGLP 1157
>gi|86608683|ref|YP_477445.1| transcription-repair coupling factor [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557225|gb|ABD02182.1| transcription-repair coupling factor [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 1158
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 301/685 (43%), Positives = 442/685 (64%), Gaps = 14/685 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP L+ GD+VVHK GIG+F+ ++ T EY+ I+Y+DG+ ++ Q +
Sbjct: 476 SRQVDPNLLKPGDFVVHKAHGIGQFLRLETLTIGGETR--EYLVIQYSDGLLRVAADQVN 533
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L RY + P L K+S +T WE+ K K K +++K+ DL++LY R +Q+ +
Sbjct: 534 S-LSRYRASGDG--PPALHKMSGST-WEKTKQKVKKSLRKVAFDLLQLYAKRAEQEGYAF 589
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY TPDQ +A +++RD+ E PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 590 PPDSPWQQELEDSFPYPLTPDQLRAVQEIKRDM-ESPRPMDRLLCGDVGFGKTEVAIRAI 648
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+AGKQ +LAPT +L +QH+ + ERF+ YP I+VGLL+RF++ EK+E L +K
Sbjct: 649 FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-IQVGLLNRFRTSEEKKEILSRLKS 707
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+++VGTH LLG V + +LGLLV+DEEQRFGV QKEKI K VDVLTL+ATPIPR
Sbjct: 708 GELDVVVGTHQLLGKDVQFRDLGLLVIDEEQRFGVNQKEKIKLLKTQVDVLTLTATPIPR 767
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY+AL+G R+ SLI TPPP R PIKT+LS ++ E + +AI+ ELDRGGQVFYV+ RI+G
Sbjct: 768 TLYMALSGLREMSLIQTPPPSRRPIKTYLSPYNPEVIRTAIRQELDRGGQVFYVVNRIEG 827
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ PG IAIAHGQ +LE TM F G I IL+CT I+ESGLDI N
Sbjct: 828 IEEASAKLREWVPGARIAIAHGQMPEGELEATMLAFNNGEIDILVCTTIIESGLDIPRVN 887
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI++++ Q+FGLAQLYQLRGRVGRA +AHA+LFY + +L+++A +RL A++E +LG
Sbjct: 888 TILIENAQEFGLAQLYQLRGRVGRAGIQAHAWLFYREDGILTEEARKRLQAIQEFTQLGS 947
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G V VG DL+ EML E++ ++ + V + QI
Sbjct: 948 GYQLAMRDMEIRGIGNLLGTEQSGQVNAVGFDLYLEMLQEAIREIRGQEIPQV--EDTQI 1005
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+N+ +P YI + M+ A + L+Q + + ++G P + LL+
Sbjct: 1006 DLNVTAMIPQSYIPDEDQKMQAYRHLAAAGSRV--ELLQIAQEWQDRFGPLPKPTQELLR 1063
Query: 745 KLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAE 804
+ ++ +A +G ++I + + V ++T M + + + +++ + + ++ ++
Sbjct: 1064 VMELKILARTLGFSRIKPAKEHVLLETPMEEPAWNRLKEALPTHLQ-PRFVYQPGKVTVR 1122
Query: 805 LLLELPREQLLNWIFQCLAELYASL 829
L +P Q L + Q L ++ +L
Sbjct: 1123 GLGMVPAAQQLENLLQWLDKMSLAL 1147
>gi|317970142|ref|ZP_07971532.1| transcription-repair coupling factor [Synechococcus sp. CB0205]
Length = 1183
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 301/684 (44%), Positives = 436/684 (63%), Gaps = 21/684 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S VDP +R GD+VVH+ GIGKF +K + + +Y+ ++YADG+ ++ Q
Sbjct: 482 SRTVDPNKMRPGDFVVHRNHGIGKF--LKLEKLAIGSEARDYLVVQYADGLLRVAADQLG 539
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L RY +++ P L+++ T AW + K + + A++K+ +DL++LY R K +
Sbjct: 540 S-LGRYRATSDS--PPDLNRMGGT-AWNKAKERARKAVRKVALDLVKLYAERHKAPGFAF 595
Query: 266 P-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P P E FPYEPTPDQ KA DV+RD+ E+ PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 596 PVDGPWQNELEDSFPYEPTPDQVKAIADVKRDM-EQPQPMDRLVCGDVGFGKTEVAIRAI 654
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+AGKQ +LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ +E++ + +
Sbjct: 655 FKAVTAGKQVAMLAPTTVLAQQHWRSLSERFAPYP-IKVSLLNRFRTSSERKVIQEGLGE 713
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++++VGTH LLG + LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIPR
Sbjct: 714 GTVDVVVGTHQLLGKGTQFKELGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPR 773
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PIKTHL+A +E V SAI+ ELDRGGQ+FYV+PR++G
Sbjct: 774 TLYMSLSGVREMSLITTPPPLRRPIKTHLAALDEEAVRSAIRQELDRGGQIFYVVPRVEG 833
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE + L+Q PG+ + +AHGQ +LE M F G +++CT IVESGLDI N
Sbjct: 834 IEEVAEGLRQMIPGLRLLVAHGQMAEGELESAMVAFNAGEADLMLCTTIVESGLDIPRVN 893
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D +FGLAQLYQLRGRVGR+ +AHA+LFYP + LSD A +RL A++E +LG
Sbjct: 894 TILIEDAHKFGLAQLYQLRGRVGRSGIQAHAWLFYPGDASLSDAARQRLRAIQEFAQLGS 953
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML ESL+++ + +V QI
Sbjct: 954 GYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPAV--DDTQI 1011
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+ + +P ++I+ + M A D L+Q +YG P + LL+
Sbjct: 1012 DLQLTAFIPGDWISDNDEKMAAYRAAADCISPD--SLLQLAADWVDRYGAIPAPVISLLQ 1069
Query: 745 KLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAE 804
+ ++ +A G ++I + ++T M + F+++ + +H + G A+
Sbjct: 1070 LMELKLLAKRCGFSRIKPEKPNIALETPMEEPAFRLLRQGLPQHLHGRLVYQAGSGSTAK 1129
Query: 805 LL--------LELPREQLLNWIFQ 820
+L +E E+L+NW+ Q
Sbjct: 1130 VLARGLGVLPMEKQVEELMNWLKQ 1153
>gi|119512690|ref|ZP_01631763.1| transcriptional-repair coupling factor [Nodularia spumigena CCY9414]
gi|119462657|gb|EAW43621.1| transcriptional-repair coupling factor [Nodularia spumigena CCY9414]
Length = 1164
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 300/640 (46%), Positives = 418/640 (65%), Gaps = 18/640 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP LR GDYVVH+ G+GKFV ++ T +Y+ ++YADG+ ++ Q
Sbjct: 486 SKQVDPNKLRQGDYVVHRSHGVGKFVKLESLTINHETR--DYLVVQYADGILRVAADQVG 543
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ + K P L K++ AWE K + + AI+K+ VDL++LY R KQ+ Y
Sbjct: 544 S-LSRFRRTGD-KAPE-LHKMTGK-AWENTKNRVRKAIKKLAVDLLKLYAARSKQEGYTY 599
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P++ P E FPY+ T DQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 600 PQDMPWQEEMEDSFPYQATTDQLKAVQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRAI 658
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V++GKQ +LAPT +L +QH+ + ERF+ YP + +GLL+RF+S E+ +
Sbjct: 659 FKAVTSGKQVALLAPTTILTQQHYHTLKERFAPYP-VNIGLLNRFRSAEERRTIQKRLAT 717
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+I+VGTH LLG V + +LGLLVVDEEQRFGV QKEKI S K VDVLTLSATPIPR
Sbjct: 718 GELDIVVGTHQLLGKNVSFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPR 777
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PIKTHL+ S E V SAI+ ELDRGGQVFYV+PR++G
Sbjct: 778 TLYMSLSGIREMSLITTPPPTRRPIKTHLAPLSPEIVRSAIRQELDRGGQVFYVVPRVEG 837
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ PG AIAHG+ +LE TM F+ G IL+CT I+ESGLDI N
Sbjct: 838 IEELTANLREMIPGGKFAIAHGRLDESELESTMLTFSNGDADILVCTTIIESGLDIPRVN 897
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D +FGL+QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG
Sbjct: 898 TILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRTLSDAARQRLRAIQEFTQLGS 957
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V QI
Sbjct: 958 GYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLEEAIREIRGQEIPKV--DETQI 1015
Query: 685 DININPRLPSEYINHLENPMEMVN--EAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
D+N+ +PS+YI ++ M A K++E+ L T +YG P L
Sbjct: 1016 DLNLTAFIPSDYIPDVDQKMSAYRAVAAAKSSEE----LKYITAEWGDRYGALPVPANQL 1071
Query: 743 LKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMM 781
L+ + ++++A +G ++I K + ++T M + + ++
Sbjct: 1072 LRVMQLKQLAKKLGFSRIKPENKQHIVLETPMEEPAWNLL 1111
>gi|257062106|ref|YP_003139994.1| transcription-repair coupling factor [Cyanothece sp. PCC 8802]
gi|256592272|gb|ACV03159.1| transcription-repair coupling factor [Cyanothece sp. PCC 8802]
Length = 1158
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 304/689 (44%), Positives = 444/689 (64%), Gaps = 22/689 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VD L GDYV+HK G+GKF+ + +S EY+ I+Y DG+ ++P
Sbjct: 482 SKQVDLNQLNPGDYVIHKNHGLGKFLKL------ESLATREYLVIQYEDGLLRVPADSFD 535
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L RY + P L K++ WE+ K + + +I+K+ VDL+ LY R K++ Y
Sbjct: 536 S-LSRYR--HTGSHPPELHKMTGKI-WEKTKQRVRKSIKKLAVDLLNLYAKRAKKEGFIY 591
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PTPDQ KA DV+ DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 592 PPDTPWQEELEDSFPYQPTPDQLKAVQDVKMDL-ESDRPMDRLVCGDVGFGKTEVAVRAI 650
Query: 325 FCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V++G KQ +LAPT +L +QH+ + ERF+ YP I +GLL+RF++ +EK++ + +
Sbjct: 651 FKAVTSGHKQVALLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTTSEKKDIVQRLA 709
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+I+VGTH LLG V + NLGLLV+DEEQRFGV QKEKI + K VDVLTL+ATPIP
Sbjct: 710 TGELDIVVGTHQLLGQSVKFKNLGLLVIDEEQRFGVNQKEKIKALKTEVDVLTLTATPIP 769
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHLS+++ + V +AI+ ELDRGGQ+FYV+PR++
Sbjct: 770 RTLYMSLSGIREISLITTPPPSRRPIKTHLSSYNPDVVRTAIRNELDRGGQIFYVVPRVE 829
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE +QQ P I IAHGQ LE TM F G IL+CT I+ESGLDI
Sbjct: 830 GIEEVAGQIQQMVPSARIVIAHGQMDVNDLEMTMLGFNNGEADILVCTTIIESGLDIPRV 889
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTIIV+D Q+FGL+QLYQLRGRVGR+ +AHA+L YP+K LS+ A +RL AL+E +LG
Sbjct: 890 NTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLLYPNKGQLSETARQRLRALQEFSQLG 949
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G +L+ EML E++ ++ + V +Q
Sbjct: 950 SGYQLATRDMEIRGVGNLLGAEQSGQMMAIGFELYMEMLQEAIKEIQGQEIPKV--DEIQ 1007
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ + +PS+YI L+ M+ A ++ L + + +YG P + LL
Sbjct: 1008 IDLQLTAFIPSDYIPDLQQKMDAYRRIAMANSKE--QLEEIVKDWTDRYGTIPSPVRQLL 1065
Query: 744 KKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 802
+ + ++++ +G ++I GK V ++T M + +K++ +++ + + R+ + ++
Sbjct: 1066 QVIELKQIGKSLGFSRIKVEGKQNVVLETPMEEPAWKLLQENLPNHL-RSRFVYSPKKVT 1124
Query: 803 AE-LLLELPREQLLNWIFQCLAELYASLP 830
L + P++QL N I + L ++ +LP
Sbjct: 1125 VRGLGIVKPQQQLENLI-EWLGKMKGALP 1152
>gi|218440658|ref|YP_002378987.1| transcription-repair coupling factor [Cyanothece sp. PCC 7424]
gi|218173386|gb|ACK72119.1| transcription-repair coupling factor [Cyanothece sp. PCC 7424]
Length = 1168
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 304/691 (43%), Positives = 442/691 (63%), Gaps = 26/691 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +V+ LR GDYVVH+ GIGKF IK ++ + EY+ I+YADG ++P
Sbjct: 496 SKQVNLDKLRPGDYVVHRNHGIGKF--IKLEILESR----EYILIQYADGTLRIPSDSLD 549
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L RY + T P L K++ T WE+ K K + ++K+ VDL+ LY R +Q+ Y
Sbjct: 550 S-LSRYRHTSNT--PPQLDKMTGKT-WEQTKQKVRKTVKKLAVDLINLYAKRAQQEGFAY 605
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PTPDQ KA +V+RD+ E PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 606 PDDSPWQQELEDSFPYQPTPDQIKAIQEVKRDMMN-ERPMDRLVCGDVGFGKTEVAVRAI 664
Query: 325 FCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V++G KQ LAPT +L +QH+ + ERF+ YP I +GLL+RF++ +E + L +
Sbjct: 665 FKAVTSGNKQVAFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTPSENRDILQRLA 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+I+VGTH LL ++V + +LGLLV+DEEQRFGV QKEKI + K VDVLTL+ATPIP
Sbjct: 724 TGELDIVVGTHQLLSNKVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTQVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHL+ ++ + + +AI+ ELDRGGQ+FYV+PR++
Sbjct: 784 RTLYMSLSGVREMSLITTPPPSRRPIKTHLTPYNPDALRTAIRNELDRGGQIFYVVPRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE ++ P IAIAHGQ +LE TM F G IL+CT I+ESGLDI
Sbjct: 844 GIEEVAAEIRDMIPTARIAIAHGQMSVSELEPTMLAFNNGEADILVCTTIIESGLDIPRV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTIIV+D Q+FGL+QLYQLRGRVGR+ +AHA+L YP K+ L++ A +RL AL+E +LG
Sbjct: 904 NTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLVYPHKAALTETARQRLRALQEFTQLG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V + Q
Sbjct: 964 SGYQLATRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLQEAIREIQGQEIPKV--EDTQ 1021
Query: 684 IDININPRLPSEYINHLENPME---MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
ID+ + +P++YI M+ + A AE L Q L +YG P +E
Sbjct: 1022 IDLKLTAFIPTDYITDANQKMDAYRTIATANSPAE-----LKQIATDLCDRYGALPSPVE 1076
Query: 741 ILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGD 799
LL+ + ++++A +G ++I GK V ++T M + +K++ +++ + R+ +
Sbjct: 1077 QLLQVIELKQLAKSLGFSRIKPDGKQHVILETPMEEPAWKLLEENLPKHL-RSRFVYSLK 1135
Query: 800 QIKAELLLELPREQLLNWIFQCLAELYASLP 830
++ L L ++ L + + L ++ +LP
Sbjct: 1136 KVTVRGLGVLKPKKQLESLIEWLGKMKGALP 1166
>gi|428212721|ref|YP_007085865.1| transcription-repair coupling factor Mfd [Oscillatoria acuminata PCC
6304]
gi|428001102|gb|AFY81945.1| transcription-repair coupling factor Mfd [Oscillatoria acuminata PCC
6304]
Length = 1156
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 303/694 (43%), Positives = 444/694 (63%), Gaps = 33/694 (4%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP LR GD+VVH+ G+G+F IK + ++ EY+ ++Y+DG+ ++PV Q
Sbjct: 480 SKQVDPNKLRQGDFVVHRHHGVGQF--IKLEKLQNR----EYLVVKYSDGILRVPVDQLE 533
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ KRP L+KL+ + +WE + K + A++K+ VDL+ LY R Q+ Y
Sbjct: 534 S-LSRFRTTG-GKRPE-LNKLT-SKSWETTRNKVRKAVKKLAVDLLNLYAKRSDQQGFAY 589
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E F Y+PTPDQ KA DV+RD+ E E PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 590 PPDMPWQQELEDSFSYQPTPDQLKATHDVKRDM-ESERPMDRLVCGDVGFGKTEVAIRAI 648
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F ++AGKQ +LAPT +L +QH+ + ERF+ YP I++GLL+RF+S AE+++ + +
Sbjct: 649 FKAITAGKQVALLAPTTILTQQHYHTIKERFAPYP-IQIGLLNRFRSPAERQDIQNRLAT 707
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+++VGTHS+L + + +LGLLVVDEEQRFGV QKEKI + K VDVLTL+ATPIPR
Sbjct: 708 GELDLVVGTHSVLSKSIQFRDLGLLVVDEEQRFGVNQKEKIKALKTQVDVLTLTATPIPR 767
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PI+THL+ + E SAI+ ELDRGGQVFYV+PR++G
Sbjct: 768 TLYMSLSGVREMSLIATPPPSRRPIQTHLAPYDLETARSAIRQELDRGGQVFYVVPRVEG 827
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE LQQ P +AIAHGQ +LE F+ G IL+CT I+ESGLDI N
Sbjct: 828 IEEVGAALQQMVPSARVAIAHGQMNPSELEAITIAFSSGEADILVCTTIIESGLDIPRVN 887
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D +FGLAQLYQLRGRVGR+ +AHA+LFYP L+D+A +RL A++E +LG
Sbjct: 888 TILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPKSGRLTDEARKRLRAIKEFAQLGS 947
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML E++ ++ + +V + QI
Sbjct: 948 GYQLAMRDMEIRGVGNLLGAEQSGQLDAIGFDLYMEMLEEAIREIRGQEIPTV--EETQI 1005
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+ + +P +YI L+ M A + L + R +YG P + L++
Sbjct: 1006 DLTLTAFIPGDYIVDLDQKMSAYRSVALATSEK--ELAEIEADWRDRYGPIPKPVNQLMQ 1063
Query: 745 KLYVRRMAADIGITKIYASG-KMVGMKTNMNKKVFKMMIDSMTSEVHR------NSLTFE 797
+ ++++A +G ++I G + + ++T M + + ++ ++ + V +T
Sbjct: 1064 VMKLKQIAKPLGFSRIKPEGTQNIVLETPMEEPAWNLLAQNLPANVQEKFVYRPGKVTVR 1123
Query: 798 GDQI-KAELLLELPREQLLNWIFQCLAELYASLP 830
G I +AE L E L++W L + +LP
Sbjct: 1124 GIGIMRAEYQL----ETLIDW----LGRMQGALP 1149
>gi|383323339|ref|YP_005384193.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383326508|ref|YP_005387362.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383492392|ref|YP_005410069.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384437660|ref|YP_005652385.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
gi|339274693|dbj|BAK51180.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
gi|359272659|dbj|BAL30178.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359275829|dbj|BAL33347.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359278999|dbj|BAL36516.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407960774|dbj|BAM54014.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
Length = 1162
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 301/648 (46%), Positives = 419/648 (64%), Gaps = 19/648 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VD L GDYVVHK GIGKF+ + D+ EY+ I+YADG+ ++P
Sbjct: 482 SKQVDINKLSPGDYVVHKSHGIGKFLKL------DALANREYLMIQYADGILRVPADSLD 535
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ + RP L K+ WE K K + A++K+ VDL+ LY R KQ Y
Sbjct: 536 S-LSRFR--HTGTRPPELHKMGGKV-WEATKNKVRKAVKKLAVDLLNLYAKRAKQVGYAY 591
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PTPDQ KA DV+RDL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 592 PPDSPWQQELEDSFPYQPTPDQLKAVQDVKRDL-EGDRPMDRLVCGDVGFGKTEVAVRAI 650
Query: 325 FCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V++G KQ +LAPT VL +QH+ + ERF+ YP I +GLL+RF++ +EK+E L +K
Sbjct: 651 FKAVTSGNKQVALLAPTTVLTQQHYHTLKERFAPYP-ITIGLLNRFRTASEKKEILAKLK 709
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+I+VGT +LG+ V + +LGLLV+DEEQRFGV QKEKI + K VDVLTL+ATPIP
Sbjct: 710 SGELDIVVGTQQVLGTSVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTEVDVLTLTATPIP 769
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHLS ++ E + +AI+ ELDRGGQVFYV+PRI+
Sbjct: 770 RTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNPEVIRTAIRNELDRGGQVFYVVPRIE 829
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE L+Q P IAI HGQ +LE TM F G IL+CT I+E+GLDI
Sbjct: 830 GIEELGGQLRQMVPSARIAIGHGQMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRV 889
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTIIV+D Q+FGLAQLYQLRGRVGR+ +AHA+L YP++ L+++A RL AL+E +LG
Sbjct: 890 NTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLG 949
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G + + EML +++ ++ + V + Q
Sbjct: 950 SGYQLATRDMEIRGVGNLLGAEQSGQMEAIGYEFYMEMLQDAIKEIQGQEIPKV--EDTQ 1007
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ + +PS+YI LE M D L + +YG P +E L
Sbjct: 1008 IDLPLTAFIPSDYIPDLEEKMAAYRRITSIESTD--ELPKIALDWGDRYGMLPSPVEELF 1065
Query: 744 KKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVH 790
K + ++ +A +G ++I GK + ++T M + +K++ +++ + +
Sbjct: 1066 KVVKLKHLAKSLGFSRIKVEGKQNLVLETPMEEPAWKLLAENLPNHLQ 1113
>gi|16331597|ref|NP_442325.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
gi|451815749|ref|YP_007452201.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
gi|3914015|sp|Q55750.1|MFD_SYNY3 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|1001661|dbj|BAA10395.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
gi|451781718|gb|AGF52687.1| transcription-repair coupling factor [Synechocystis sp. PCC 6803]
Length = 1199
Score = 557 bits (1435), Expect = e-155, Method: Compositional matrix adjust.
Identities = 301/648 (46%), Positives = 419/648 (64%), Gaps = 19/648 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VD L GDYVVHK GIGKF+ + D+ EY+ I+YADG+ ++P
Sbjct: 519 SKQVDINKLSPGDYVVHKSHGIGKFLKL------DALANREYLMIQYADGILRVPADSLD 572
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ + RP L K+ WE K K + A++K+ VDL+ LY R KQ Y
Sbjct: 573 S-LSRFR--HTGTRPPELHKMGGKV-WEATKNKVRKAVKKLAVDLLNLYAKRAKQVGYAY 628
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PTPDQ KA DV+RDL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 629 PPDSPWQQELEDSFPYQPTPDQLKAVQDVKRDL-EGDRPMDRLVCGDVGFGKTEVAVRAI 687
Query: 325 FCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V++G KQ +LAPT VL +QH+ + ERF+ YP I +GLL+RF++ +EK+E L +K
Sbjct: 688 FKAVTSGNKQVALLAPTTVLTQQHYHTLKERFAPYP-ITIGLLNRFRTASEKKEILAKLK 746
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+I+VGT +LG+ V + +LGLLV+DEEQRFGV QKEKI + K VDVLTL+ATPIP
Sbjct: 747 SGELDIVVGTQQVLGTSVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTEVDVLTLTATPIP 806
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHLS ++ E + +AI+ ELDRGGQVFYV+PRI+
Sbjct: 807 RTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNPEVIRTAIRNELDRGGQVFYVVPRIE 866
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE L+Q P IAI HGQ +LE TM F G IL+CT I+E+GLDI
Sbjct: 867 GIEELGGQLRQMVPSARIAIGHGQMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRV 926
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTIIV+D Q+FGLAQLYQLRGRVGR+ +AHA+L YP++ L+++A RL AL+E +LG
Sbjct: 927 NTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLG 986
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G + + EML +++ ++ + V + Q
Sbjct: 987 SGYQLATRDMEIRGVGNLLGAEQSGQMEAIGYEFYMEMLQDAIKEIQGQEIPKV--EDTQ 1044
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ + +PS+YI LE M D L + +YG P +E L
Sbjct: 1045 IDLPLTAFIPSDYIPDLEEKMAAYRRITSIESTD--ELPKIALDWGDRYGMLPSPVEELF 1102
Query: 744 KKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVH 790
K + ++ +A +G ++I GK + ++T M + +K++ +++ + +
Sbjct: 1103 KVVKLKHLAKSLGFSRIKVEGKQNLVLETPMEEPAWKLLAENLPNHLQ 1150
>gi|87125795|ref|ZP_01081638.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9917]
gi|86166604|gb|EAQ67868.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9917]
Length = 1184
Score = 557 bits (1435), Expect = e-155, Method: Compositional matrix adjust.
Identities = 306/703 (43%), Positives = 442/703 (62%), Gaps = 19/703 (2%)
Query: 135 GDSGY--NGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY 192
G SGY S VDP +R GDYVVH+ GIG+F K + S +Y+ ++Y
Sbjct: 470 GSSGYVRRRRKAASRTVDPNKMRPGDYVVHRNHGIGRFQ--KLEKLAISGEVRDYLVVQY 527
Query: 193 ADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLME 252
ADG+ ++ Q L R+ ++T P LSK+ + AW + K + A++K+ +DL++
Sbjct: 528 ADGLLRVAADQLGS-LGRFRANSDT--PPQLSKMGGS-AWVKAKERASKAVRKVALDLVK 583
Query: 253 LYLHRLKQKRPPYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGD 311
LY R + +P + P E FPYEPTPDQ KA DV+RD+ E+ PMDRL+CGD
Sbjct: 584 LYAERHQAPGFAFPGDGPWQEELEDSFPYEPTPDQLKATADVKRDM-EQPQPMDRLVCGD 642
Query: 312 VGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQS 371
VGFGKTEVA+RAIF ++AGKQ +LAPT VLA+QH+ +SERF+ YP IKV LL+RF++
Sbjct: 643 VGFGKTEVAIRAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRT 701
Query: 372 KAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKIS 431
+E++ L+ +K G ++ +VGTH LL ++ LGLLVVDEEQRFGV QKEKI + +
Sbjct: 702 ASERKAILEGLKQGTIDAVVGTHQLLSKSTSFDKLGLLVVDEEQRFGVNQKEKIKALRKD 761
Query: 432 VDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDR 491
VDVLTLSATPIPRTLY++L+G R+ SLI+TPPP R PIKTHL+A +E V SAI+ ELDR
Sbjct: 762 VDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDEEAVRSAIRQELDR 821
Query: 492 GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICT 551
GGQVFYV+PR++G+EE L+Q PG+ + +AHGQ +LE M F G +++CT
Sbjct: 822 GGQVFYVVPRVEGIEEVAAQLRQMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCT 881
Query: 552 NIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALE 611
IVESGLDI NTI+++D +FGLAQLYQLRGRVGR+ +AHA+LFYP + LSD A +
Sbjct: 882 TIVESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGDASLSDAARQ 941
Query: 612 RLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDE 671
RL A++E +LG G+QLA +DM IRG G + G +Q+G + +G DL+ EML ESL+++
Sbjct: 942 RLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQG 1001
Query: 672 HCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQ 731
+ +V Q+D+ + LP+++I + M A + + L+ + +
Sbjct: 1002 QDIPAV--DDTQVDLQVTAFLPADWITDSDEKMAAYRAAAECTSAE--ALVDLAATWADR 1057
Query: 732 YGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHR 791
YG P ++ LL+ + ++ +A G ++I + ++T M + F+++ + +H
Sbjct: 1058 YGALPGPVQSLLQLMDLKLLAKRCGFSRIRPEKPNIALETPMEEPAFRLLRQGLPQHLHG 1117
Query: 792 NSLTFEGDQIKAELLLE----LPREQLLNWIFQCLAELYASLP 830
+ G A++L LP E+ L + L + A +P
Sbjct: 1118 RLVYQAGTGTSAKVLARGLGVLPMEKQLEELKGWLELMAAQIP 1160
>gi|116070624|ref|ZP_01467893.1| Transcription-repair coupling factor [Synechococcus sp. BL107]
gi|116066029|gb|EAU71786.1| Transcription-repair coupling factor [Synechococcus sp. BL107]
Length = 1192
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 296/683 (43%), Positives = 433/683 (63%), Gaps = 23/683 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S VDP +R GD+VVH+ GIG+F + K + D +Y+ ++YADG+ ++ Q
Sbjct: 491 SRTVDPNKMRPGDFVVHRNHGIGRFKAMDKLALSGDVR---DYLVVQYADGILRVAADQL 547
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
L RY +E+ P LS++ AW + K + K A++K+ +DL++LY R +
Sbjct: 548 GS-LGRYRATSES--PPQLSRMGGA-AWTKAKDRAKKAVRKVALDLVKLYAERQQSNGFA 603
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+P + P E FPYEPTPDQ K+ DV+RD+ ER PMDRL+CGDVGFGKTEVA+RA
Sbjct: 604 FPPDGPWQTELEESFPYEPTPDQLKSTTDVKRDM-ERAEPMDRLVCGDVGFGKTEVAIRA 662
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF ++AGKQ +LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ E++ L+ +K
Sbjct: 663 IFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTTTERKSILEGLK 721
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++ +VGTH LL + LGLLVVDEEQRFGV QKEKI + VDVLTLSATPIP
Sbjct: 722 QGTIDAVVGTHQLLSKGTSFQQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIP 781
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHL++ E V SAI+ ELDRGGQVFYV+PR++
Sbjct: 782 RTLYMSLSGVREMSLITTPPPLRRPIKTHLASLDPEAVRSAIRQELDRGGQVFYVVPRVE 841
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+E+ L+ PG+ + +AHGQ +LE M F G +++CT IVESGLDI
Sbjct: 842 GIEDVATGLRAMLPGLKLLVAHGQMAEGELESAMVAFNAGEADVMLCTTIVESGLDIPRV 901
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D +FGLAQLYQLRGRVGR+ +AHA+LFYP + LSD A +RL A++E +LG
Sbjct: 902 NTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSDNARQRLRAIQEFAQLG 961
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G DL+ EML ESL+++ + SV Q
Sbjct: 962 SGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPSV--DDTQ 1019
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+ + +P+++I + + A A + L++ +YG P +++ LL
Sbjct: 1020 VDLPVTAFVPADWITDPDEKIAAYRAAADCASSE--ALVELAAGWADRYGAIPAAVQSLL 1077
Query: 744 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
+ + ++ +A G ++I + ++T M + F+++ + +H + G ++
Sbjct: 1078 QLMELKMLAKRCGFSRIKPEKPNIVLETPMEEPAFRLLRQGLPQHLHGRFVYQAGSGLQH 1137
Query: 804 ELL--------LELPREQLLNWI 818
+ L +E EQL++W+
Sbjct: 1138 KALARGLGALPMEKQLEQLMDWL 1160
>gi|86606417|ref|YP_475180.1| transcription-repair coupling factor [Synechococcus sp. JA-3-3Ab]
gi|86554959|gb|ABC99917.1| transcription-repair coupling factor [Synechococcus sp. JA-3-3Ab]
Length = 1156
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 305/685 (44%), Positives = 446/685 (65%), Gaps = 14/685 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP L+ GD+VVHK GIG+F+ ++ T EY+ I+Y+DG+ ++ Q +
Sbjct: 476 SRQVDPNLLKPGDFVVHKAHGIGQFLRLESLTIGGETR--EYLVIQYSDGLLRVAADQVN 533
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L RY ++ P L K+S +T WE+ K K K +++K+ DL++LY R +Q+ +
Sbjct: 534 S-LSRYRASSDG--PPALHKMSGST-WEKTKQKVKKSLKKVAFDLLQLYAKRAEQEGYAF 589
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P EF FPY TPDQ +A +++RD+ E PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 590 PPDSPWQQEFEESFPYPLTPDQIRAVQEIKRDM-ESPRPMDRLLCGDVGFGKTEVAIRAI 648
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+AGKQ +LAPT +L +QH+ + ERF+ YP I+VGLL+RF++ EK+E L +K
Sbjct: 649 FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-IQVGLLNRFRTPEEKKEILARLKS 707
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L++IVGTH LLG V + +LGLLV+DEEQRFGV QKEKI K VDVLTL+ATPIPR
Sbjct: 708 GELDVIVGTHQLLGKDVQFRDLGLLVIDEEQRFGVNQKEKIKLLKTQVDVLTLTATPIPR 767
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY+AL+G R+ SLI TPPP R PIKTHLS ++ E + +AI+ ELDRGGQVFYV+ RI+G
Sbjct: 768 TLYMALSGLREMSLIQTPPPSRRPIKTHLSPYNPEVIRTAIRQELDRGGQVFYVVNRIEG 827
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ PG IAIAHGQ +LE TM F G I IL+CT I+ESGLDI N
Sbjct: 828 IEETSAKLREWVPGARIAIAHGQMPEGELEATMLAFNNGEIDILVCTTIIESGLDIPRVN 887
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI++++ Q+FGLAQLYQLRGRVGRA +AHA+LFY + +L+++A +RL A++E +LG
Sbjct: 888 TILIENAQEFGLAQLYQLRGRVGRAGIQAHAWLFYREDGILTEEARKRLQAIQEFTQLGS 947
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G QQ+G + VG DL+ EML E++ ++ + V + QI
Sbjct: 948 GYQLALRDMEIRGIGNLLGTQQSGQLNAVGFDLYLEMLQEAIREIRGQEIPQV--EDTQI 1005
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+NI +P YI + M+ + A + L+Q + + ++G P + LL+
Sbjct: 1006 DLNITAMIPQSYIPDEDQKMQAYRQLAAAGSRV--ELLQIAQEWQDRFGPLPKPTQELLR 1063
Query: 745 KLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAE 804
+ ++ +A +G ++I + + V ++T M + + + +++ + + + ++ ++
Sbjct: 1064 VMELKILARTLGFSRIRPAKEHVLLETPMEEPAWNRLKEALPAHLQ-SRFVYQPGKVTVR 1122
Query: 805 LLLELPREQLLNWIFQCLAELYASL 829
L +P Q L + Q L ++ +L
Sbjct: 1123 GLGMVPAAQQLENLLQWLDKMSLAL 1147
>gi|425446178|ref|ZP_18826189.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9443]
gi|389733706|emb|CCI02565.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9443]
Length = 1160
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 305/693 (44%), Positives = 441/693 (63%), Gaps = 22/693 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI----EYVFIEYADGMAKLPV 201
S +VD LR D+VVHK GIG+F IK + Q+ + + +Y+ I+YADG+ ++P
Sbjct: 479 SVQVDVNKLRPLDFVVHKHHGIGQF--IKLEKQESTISGVVQGRDYLVIKYADGLLRVPA 536
Query: 202 KQASRM-LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
+ YR+ E + L K+S AWE K + + +++K+ VDL+ +Y R ++
Sbjct: 537 DSLDNLSRYRHTGSQEPE----LHKISGK-AWEATKARVRKSVKKLAVDLINIYAQRAQK 591
Query: 261 KRPPYP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
YP NP E FPY+PT DQ KA DV+RDL E + PMDRL+CGDVGFGKTEV
Sbjct: 592 SGFAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEV 650
Query: 320 ALRAIFCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378
A+RAIF V+ G KQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF++ +EK++
Sbjct: 651 AIRAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDI 709
Query: 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLS 438
+ +K G L+I+VGT LL V + +LGLLV+DEEQRFGV QKEKI +FK ++DVLTLS
Sbjct: 710 VQRLKTGELDIVVGTQLLLSKAVEFRDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLS 769
Query: 439 ATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYV 498
ATPIPRTLY++L+G R+ SLI+TPPP R PI+THLS+++ + + +AI+ ELDRGGQ+FYV
Sbjct: 770 ATPIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDAIRTAIRNELDRGGQIFYV 829
Query: 499 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558
+PRI+G+EE +Q PG IAI HG+ +LE TM F G IL+CT IVESGL
Sbjct: 830 VPRIEGIEEKAAAIQGMIPGARIAIGHGRMDEAELETTMLAFNNGEADILVCTTIVESGL 889
Query: 559 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 618
DI NTII++D Q+FGLAQLYQLRGRVGR+ +AHA+L YP K L++ A ERL A++E
Sbjct: 890 DIPRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKGELTETARERLKAIQE 949
Query: 619 CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP 678
+LG G+QLA +D+ IRG G + G +Q+G + +G DL+ EML E+L ++ + V
Sbjct: 950 FTQLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV- 1008
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+ QID+ + +P++YI+ E M++ A Q L Q L +YG P
Sbjct: 1009 -EDTQIDLKLTAFIPNDYISDPEQKMDVYRAIATANSQK--TLGQIAADLVDRYGAIPSP 1065
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFE 797
+ L K + ++ +A +G +I GK + ++T M + +K++ + + + ++ +
Sbjct: 1066 VAQLFKVIELKHLAKSLGFLRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI-QSRFVYS 1124
Query: 798 GDQIKAELLLELPREQLLNWIFQCLAELYASLP 830
Q+ L L +Q L+ + + LA+ LP
Sbjct: 1125 PKQVTVRGLGTLKPQQQLDSLLEWLAKCKDGLP 1157
>gi|218249019|ref|YP_002374390.1| transcription-repair coupling factor [Cyanothece sp. PCC 8801]
gi|218169497|gb|ACK68234.1| transcription-repair coupling factor [Cyanothece sp. PCC 8801]
Length = 1158
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 302/688 (43%), Positives = 439/688 (63%), Gaps = 20/688 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VD L GDYV+HK G+GKF+ + +S EY+ I+Y DG+ ++P
Sbjct: 482 SKQVDLNQLNPGDYVIHKNHGLGKFLKL------ESLATREYLVIQYEDGLLRVPADSFD 535
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L RY + P L K++ WE+ K + + +I+K+ VDL+ LY R K++ Y
Sbjct: 536 S-LSRYR--HTGSHPPELHKMTGKI-WEKTKQRVRKSIKKLAVDLLNLYAKRAKKEGFIY 591
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PTPDQ KA DV+ DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 592 PPDTPWQEELEDSFPYQPTPDQLKAVQDVKMDL-ESDRPMDRLVCGDVGFGKTEVAVRAI 650
Query: 325 FCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V++G KQ +LAPT +L +QH+ + ERF+ YP I +GLL+RF++ +EK++ + +
Sbjct: 651 FKAVTSGHKQVALLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTTSEKKDIVQRLA 709
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+I+VGTH LLG V + NLGLLV+DEEQRFGV QKEKI K VDVLTL+ATPIP
Sbjct: 710 TGELDIVVGTHQLLGQSVKFKNLGLLVIDEEQRFGVNQKEKIKVLKTEVDVLTLTATPIP 769
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHLS+++ + V +AI+ ELDRGGQ+FYV+PR++
Sbjct: 770 RTLYMSLSGIREISLITTPPPSRRPIKTHLSSYNPDVVRTAIRNELDRGGQIFYVVPRVE 829
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE +QQ P I IAHGQ LE TM F G IL+CT I+ESGLDI
Sbjct: 830 GIEEVAGQIQQMVPSARIVIAHGQMDVNDLEMTMLGFNNGEADILVCTTIIESGLDIPRV 889
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTIIV+D Q+FGL+QLYQLRGRVGR+ +AHA+L YP+K LS+ A +RL AL+E +LG
Sbjct: 890 NTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLLYPNKGQLSETARQRLRALQEFSQLG 949
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G +L+ EML E++ ++ + V Q
Sbjct: 950 SGYQLATRDMEIRGVGNLLGAEQSGQMMAIGFELYMEMLQEAIKEIQGQEIPKV--DETQ 1007
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ + +PS+YI L+ M+ A ++ L + + +YG P + LL
Sbjct: 1008 IDLQLTAFIPSDYIPDLQQKMDAYRRIAMANSKE--QLEEIVKDWTDRYGTIPSPVRQLL 1065
Query: 744 KKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 802
+ + ++++ +G ++I GK V ++T M + +K++ +++ + + R+ + ++
Sbjct: 1066 QVIELKQIGKSLGFSRIKVEGKQNVVLETPMEEPAWKLLQENLPNHL-RSRFVYSPKKVT 1124
Query: 803 AELLLELPREQLLNWIFQCLAELYASLP 830
L L +Q L + + L ++ +LP
Sbjct: 1125 VRGLGILKPQQQLENLIEWLGKMKGALP 1152
>gi|425466963|ref|ZP_18846257.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9809]
gi|389830370|emb|CCI27727.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9809]
Length = 1160
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 305/687 (44%), Positives = 441/687 (64%), Gaps = 24/687 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI----EYVFIEYADGMAKLPV 201
S +VD LR D+VVHK GIG+F IK + Q+ + + +Y+ I+YADG+ ++P
Sbjct: 479 SVQVDVNKLRPLDFVVHKHHGIGQF--IKLEKQESTIGGVVQGRDYLVIKYADGLLRVPA 536
Query: 202 KQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQK 261
L RY + + L K+S AWE K + + +++K+ VDL+ +Y R ++
Sbjct: 537 DSVDN-LSRYR--HTGSQAPELHKISGK-AWEATKARVRKSVKKLAVDLINIYAQRAQKS 592
Query: 262 RPPYP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320
YP NP E FPY+PT DQ KA DV+RDL E + PMDRL+CGDVGFGKTEVA
Sbjct: 593 GFAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEVA 651
Query: 321 LRAIFCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
+RAIF V+ G KQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF++ +EK++ +
Sbjct: 652 IRAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDIV 710
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+K G L+I+VGT LL V + +LGLLV+DEEQRFGV QKEKI +FK ++DVLTLSA
Sbjct: 711 QRLKTGELDIVVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLSA 770
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTLY++L+G R+ SLI+TPPP R PI+THLS+++ + + +AI+ ELDRGGQ+FYV+
Sbjct: 771 TPIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQIFYVV 830
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
PRI+G+EE +Q PG I+I HG+ +LE TM F G IL+CT IVESGLD
Sbjct: 831 PRIEGIEEKAAAIQGMIPGARISIGHGRMDEAELETTMLAFNNGEADILVCTTIVESGLD 890
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
I NTII++D Q+FGLAQLYQLRGRVGR+ +AHA+L YP K+ L++ A ERL A++E
Sbjct: 891 IPRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKAELTETARERLKAIQEF 950
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
+LG G+QLA +D+ IRG G + G +Q+G + +G DL+ EML E+L ++ + V
Sbjct: 951 TQLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV-- 1008
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
+ QID+ + +P++YI+ LE M++ A Q L Q L +YG P +
Sbjct: 1009 EDTQIDLKLTAFIPNDYISDLEQKMDVYRAIATANSQK--NLGQIAADLVDRYGAIPSPV 1066
Query: 740 EILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG 798
L K + ++ +A +G ++I GK + ++T M + +K++ + + + ++ +
Sbjct: 1067 AQLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI-QSRFVYSP 1125
Query: 799 DQIKAE-LLLELPREQ---LLNWIFQC 821
Q+ L L P +Q LL W+ +C
Sbjct: 1126 KQVTVRGLGLVKPSQQLDSLLEWLAKC 1152
>gi|87302159|ref|ZP_01084984.1| transcription-repair coupling factor [Synechococcus sp. WH 5701]
gi|87283084|gb|EAQ75040.1| transcription-repair coupling factor [Synechococcus sp. WH 5701]
Length = 1187
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 300/692 (43%), Positives = 443/692 (64%), Gaps = 21/692 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S VDP +R GD+VVH+ GIG+F+ + K + +S +Y+ ++YADG+ ++ Q
Sbjct: 486 SRTVDPNKMRPGDFVVHRNHGIGRFLRLEKLAISGESR---DYLVVQYADGLLRVAADQL 542
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
L R+ T P L++++ AW R K + + A++K+ +DL++LY R + P
Sbjct: 543 GS-LGRFR--ASTDSPPELNRMAGV-AWTRAKERARKAVRKVAMDLVKLYAERQQAAGFP 598
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+P + P E FPYEPTPDQ KA +V+RD+ E+ PMDRL+CGDVGFGKTEVA+RA
Sbjct: 599 FPADGPWQGELEDSFPYEPTPDQVKAIAEVKRDM-EKPEPMDRLVCGDVGFGKTEVAIRA 657
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
+F V+AGKQ +LAPT VLA+QH+ +SERF+ YP +KV LL+RF++ AE++ LD ++
Sbjct: 658 VFKAVTAGKQCALLAPTTVLAQQHWRTLSERFAPYP-LKVALLNRFRTTAERKTILDGLR 716
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++++VGTH LL + LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIP
Sbjct: 717 DGTVDVVVGTHQLLSKGTSFEKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIP 776
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHL+A +E V SAI+ ELDRGGQVFYV+PR++
Sbjct: 777 RTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDEEAVRSAIRQELDRGGQVFYVVPRVE 836
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE L++ PG+ + +AHGQ +LE M F G +++CT I+ESGLDI
Sbjct: 837 GIEEVAGQLREMLPGLKLLVAHGQMGEGELESAMVAFNAGEADVMLCTTIIESGLDIPRV 896
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+V+D +FGLAQLYQLRGRVGR+ +AHA+LFYP + LS+ A +RL A++E +LG
Sbjct: 897 NTILVEDAHKFGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSEAARQRLRAIQEFAQLG 956
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G DL+ EML ESL+++ + V + Q
Sbjct: 957 SGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPVV--EETQ 1014
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ I +P+++I + M A ++ L+Q +YG P + LL
Sbjct: 1015 IDLPITAFIPADWIPESDEKMAAYRAAADCRTRE--ELVQLAADWVDRYGALPSPVASLL 1072
Query: 744 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGD---- 799
+ + ++ +A G ++I + ++T M + F+++ + +H L ++G
Sbjct: 1073 QLMELKLLARRCGFSRIRLEKPNIVLETPMEEPAFRLLRQGLPQHLH-GRLVYQGGGGST 1131
Query: 800 -QIKAELLLELPREQLLNWIFQCLAELYASLP 830
++ A L L E+ L+ + + LA + +P
Sbjct: 1132 AKVLARGLNVLAAERQLDMLKEWLAAMAEQIP 1163
>gi|425439066|ref|ZP_18819401.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9717]
gi|389715217|emb|CCI00383.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9717]
Length = 1160
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 305/688 (44%), Positives = 441/688 (64%), Gaps = 26/688 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI----EYVFIEYADGMAKLPV 201
S +VD LR D+VVHK GIG+F IK + Q+ + + +Y+ I+YADG+ ++P
Sbjct: 479 SVQVDVNKLRPLDFVVHKHHGIGQF--IKLEKQESTISGVVQGRDYLVIKYADGLLRVPA 536
Query: 202 KQASRM-LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
+ YR+ E + L K+S AWE K + + +++K+ VDL+ +Y R ++
Sbjct: 537 DSVDNLSRYRHTGSQEPE----LHKISGK-AWEATKARVRKSVKKLAVDLINIYAQRAQK 591
Query: 261 KRPPYP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
YP NP E FPY+PT DQ KA DV+RDL E + PMDRL+CGDVGFGKTEV
Sbjct: 592 SGFAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEV 650
Query: 320 ALRAIFCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378
A+RAIF V+ G KQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF++ +EK++
Sbjct: 651 AIRAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDI 709
Query: 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLS 438
+ +K G L+I+VGT LL V + +LGLLV+DEEQRFGV QKEKI +FK ++DVLTLS
Sbjct: 710 VQRLKTGELDIVVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLS 769
Query: 439 ATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYV 498
ATPIPRTLY++L+G R+ SLI+TPPP R PI+THLS+++ + + +AI+ ELDRGGQ+FYV
Sbjct: 770 ATPIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQIFYV 829
Query: 499 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558
+PRI+G+EE +Q PG IAI HG+ +LE TM F G IL+CT IVESGL
Sbjct: 830 VPRIEGIEEKAAAIQGMIPGARIAIGHGRMDEAELETTMLAFNNGEADILVCTTIVESGL 889
Query: 559 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 618
DI NTII++D Q+FGLAQLYQLRGRVGR+ +AHA+L YP K+ L++ A ERL A++E
Sbjct: 890 DIPRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKAELTETARERLKAIQE 949
Query: 619 CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP 678
+LG G+QLA +D+ IRG G + G +Q+G + +G DL+ EML E+L ++ + V
Sbjct: 950 FTQLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV- 1008
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+ QID+ + +P++YI+ E M++ A Q L Q L +YG P
Sbjct: 1009 -EDTQIDLKLTAFIPNDYISDPEQKMDVYRAIATANSQK--NLGQIAADLVDRYGAIPSP 1065
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFE 797
+ L K + ++ +A +G ++I GK + ++T M + +K++ + + + ++ +
Sbjct: 1066 VAQLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI-QSRFVYS 1124
Query: 798 GDQIKAE-LLLELPREQ---LLNWIFQC 821
Q+ L L P +Q LL W+ +C
Sbjct: 1125 PKQVTVRGLGLVKPPQQLDSLLEWLAKC 1152
>gi|148242564|ref|YP_001227721.1| transcription-repair coupling factor [Synechococcus sp. RCC307]
gi|147850874|emb|CAK28368.1| Transcription-repair coupling factor [Synechococcus sp. RCC307]
Length = 1183
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 289/660 (43%), Positives = 426/660 (64%), Gaps = 15/660 (2%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRM 207
VDP +R GD+VVH+ GIG+F+ + K + D+ +Y+ ++Y DG+ ++ Q
Sbjct: 485 VDPNRMRQGDFVVHRNHGIGRFLKMEKLAISGDAR---DYLVVQYLDGLLRVAADQLGS- 540
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK 267
L R+ ++ P L+K+ AW + K + + A++K+ DL++LY R + +P
Sbjct: 541 LGRFRASSDA--PPQLNKMGGA-AWAKTKARARKAVRKVAFDLVKLYAERTESPGFAFPV 597
Query: 268 N-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
+ P E FPYEPTPDQ KA +V+RD+ E+ PMDRL+CGDVGFGKTEVALRAIF
Sbjct: 598 DGPWQNELEDSFPYEPTPDQLKAITEVKRDM-EQGKPMDRLVCGDVGFGKTEVALRAIFK 656
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
V+AG+Q +LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ +E++E L + G
Sbjct: 657 AVTAGRQTALLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTASERKEILKGLSDGA 715
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
++++VGTH LLG + LGLLVVDEEQRFGV QKEKI + VDVLTLSATPIPRTL
Sbjct: 716 IDVVVGTHQLLGKGTSFKQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTL 775
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
Y++L+G R+ SLI+TPPP R PIKTHL++ +E V SAI+ ELDRGGQVFYV+PR++G+E
Sbjct: 776 YMSLSGVREMSLITTPPPLRRPIKTHLASLDEEAVRSAIRQELDRGGQVFYVVPRVEGIE 835
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
E L+Q PG+ + +AHGQ +LE M F G +++CT IVESGLDI NTI
Sbjct: 836 EVAGGLRQMLPGLRLLVAHGQMPEGELESAMVAFNAGEADVMLCTTIVESGLDIPRVNTI 895
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
+++D Q+FGL+QLYQLRGRVGR+ +AHA+LFYP + LSD A +RL A++E +LG G+
Sbjct: 896 LIEDSQKFGLSQLYQLRGRVGRSGIQAHAWLFYPGDASLSDAARQRLRAIQEFAQLGSGY 955
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 686
QLA +DM IRG G + G +Q+G + +G DL+ EML E L+++ + +V QID+
Sbjct: 956 QLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQEELAEIRGQDIPAV--DDTQIDL 1013
Query: 687 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
++ +P++++ + M A ++ L+Q +YG P ++ LL+ +
Sbjct: 1014 SVTAFIPADWVTEADEKMAAYRAAADCDSRE--GLLQLAADWVDRYGPLPAPVQSLLQLM 1071
Query: 747 YVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELL 806
++ +A G ++I + ++T M + F+ + + + +H + G A++L
Sbjct: 1072 EIKLLAKRCGFSRIKPEKPNLVLETPMEEPAFRRLRQGLATHLHGRLVYQAGSGTTAKVL 1131
>gi|425457561|ref|ZP_18837264.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9807]
gi|389801052|emb|CCI19737.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9807]
Length = 1160
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 304/692 (43%), Positives = 441/692 (63%), Gaps = 20/692 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI----EYVFIEYADGMAKLPV 201
S +VD LR D+VVHK GIG+F IK + Q+ + + +Y+ I+YADG+ ++P
Sbjct: 479 SVQVDVNKLRPLDFVVHKHHGIGQF--IKLEKQESTISGVVQGRDYLVIKYADGLLRVPA 536
Query: 202 KQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQK 261
L RY + + L K+S AWE K + + +++K+ VDL+ +Y R ++
Sbjct: 537 DSLDN-LSRYR--HTGSQAPELHKISGK-AWEATKARVRKSVKKLAVDLINIYAQRAQKS 592
Query: 262 RPPYP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320
YP NP E FPY+PT DQ KA DV+RDL E + PMDRL+CGDVGFGKTEVA
Sbjct: 593 GFAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEVA 651
Query: 321 LRAIFCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
+RAIF V+ G KQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF++ +EK++ +
Sbjct: 652 IRAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDIV 710
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+K G L+I+VGT LL V + +LGLLV+DEEQRFGV QKEKI +FK ++DVLTLSA
Sbjct: 711 QRLKTGELDIVVGTQLLLSKAVEFRDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLSA 770
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTLY++L+G R+ SLI+TPPP R PI+THLS+++ + + +AI+ ELDRGGQ+FYV+
Sbjct: 771 TPIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDAIRTAIRNELDRGGQIFYVV 830
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
PRI+G+EE +Q PG I+I HG+ +LE TM F G IL+CT IVESGLD
Sbjct: 831 PRIEGIEEKAAAIQGMIPGARISIGHGRMDEAELETTMLAFNNGEADILVCTTIVESGLD 890
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
I NTII++D Q+FGLAQLYQLRGRVGR+ +AHA+L YP K L++ A ERL A++E
Sbjct: 891 IPRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKGELTETARERLKAIQEF 950
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
+LG G+QLA +DM IRG G + G +Q+G + +G DL+ EML E+L ++ + V
Sbjct: 951 TQLGSGYQLATRDMEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV-- 1008
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
+ QID+ + +P++YI+ E M++ A Q L Q L +YG P +
Sbjct: 1009 EDTQIDLKLTAFIPNDYISDPEQKMDVYRAIATANSQK--TLGQIAADLVDRYGAIPSPV 1066
Query: 740 EILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG 798
L K + ++ +A +G ++I GK + ++T M + +K++ + + + ++ +
Sbjct: 1067 AQLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI-QSRFVYSP 1125
Query: 799 DQIKAELLLELPREQLLNWIFQCLAELYASLP 830
Q+ L + +Q L+ + + LA+ LP
Sbjct: 1126 KQVTVRGLGAVKPQQQLDSLLEWLAKCKDGLP 1157
>gi|126657369|ref|ZP_01728528.1| transcription-repair coupling factor [Cyanothece sp. CCY0110]
gi|126621356|gb|EAZ92068.1| transcription-repair coupling factor [Cyanothece sp. CCY0110]
Length = 1160
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 303/693 (43%), Positives = 438/693 (63%), Gaps = 20/693 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S KVD L GDYVVHK GIGKF+ + +S EY+ ++YADG+ ++P
Sbjct: 485 SKKVDLQQLHPGDYVVHKSHGIGKFLKL------ESLATREYLVVQYADGILRIPADSFD 538
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L RY T P L K++ W++ K + + I+K+ VDL+ LY R K Y
Sbjct: 539 S-LSRYRHTGST--PPQLHKMTGKM-WQKSKQRVRKNIKKLAVDLINLYAKRAKNVGFTY 594
Query: 266 P-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P P E FPY+PTPDQ KA DV+ DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 595 PLDTPWQQELEDSFPYQPTPDQLKAIQDVKIDL-ESDRPMDRLVCGDVGFGKTEVAVRAI 653
Query: 325 FCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V++G KQ LAPT +L +QH+ + ERF+ YP I +GLL+RF++ +EK+E +D +
Sbjct: 654 FKAVTSGHKQVAFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTNSEKKEIIDRLA 712
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+I+VGT LLG + + +LGLLVVDEEQRFGV QKEKI K VDVLTL+ATPIP
Sbjct: 713 TGELDIVVGTQQLLGKSIKFKDLGLLVVDEEQRFGVNQKEKIKDMKSHVDVLTLTATPIP 772
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHLS ++ + V +AI+ ELDRGGQVFYV+PR++
Sbjct: 773 RTLYMSLSGIREMSLITTPPPSRRPIKTHLSRYNPDVVRTAIRNELDRGGQVFYVVPRVE 832
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE L++ P IAI HGQ LE TM F G IL+CT IVESGLDI
Sbjct: 833 GIEEVAAELKKMVPSARIAIGHGQMNVNDLEMTMLSFNNGDADILVCTTIVESGLDIPRV 892
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTII++D Q+FGLAQLYQLRGRVGRA +AHA+L YP K+ L++ A +RL AL+E +LG
Sbjct: 893 NTIIIEDAQKFGLAQLYQLRGRVGRAGIQAHAWLLYPSKAQLTETARKRLRALQEFSQLG 952
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + ++G +L+ +ML E++ ++ + V + Q
Sbjct: 953 SGYQLATRDMEIRGVGNLLGAEQSGQMESIGFELYMDMLQEAIKEIQGQEIPKV--EDTQ 1010
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+ + +P++YI +E M A + L Q +YGK P ++ LL
Sbjct: 1011 VDLQLTAFIPTDYIPDMEQKMSAYRAIAVANSKK--ELAQIAAEWNDRYGKLPIPVQQLL 1068
Query: 744 KKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 802
+ + ++++A +G ++I GK + ++T M + +K++ +++ + + R+ + ++
Sbjct: 1069 QVIELKQLAKSLGFSRIKPEGKQNIVLETPMEEPAWKLLEENLPAHL-RSRFVYTPKKVT 1127
Query: 803 AELLLELPREQLLNWIFQCLAELYASLPALIKY 835
L + ++ L + + L ++ ++P +Y
Sbjct: 1128 VRGLGVMKPQKQLESLLEWLGKMQDAIPVTSEY 1160
>gi|81300135|ref|YP_400343.1| transcription-repair coupling factor [Synechococcus elongatus PCC
7942]
gi|81169016|gb|ABB57356.1| transcription-repair coupling factor [Synechococcus elongatus PCC
7942]
Length = 1153
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 295/647 (45%), Positives = 419/647 (64%), Gaps = 14/647 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VD L+ GDYVVH+ GIG+FV K + S EY+ ++YADG+ ++ Q
Sbjct: 474 SKQVDRDRLKPGDYVVHRSHGIGRFV--KLESLSLSGEMREYLVLQYADGLLRVAADQMG 531
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
+ + E RP LS ++ + AWE+ K K + A++K+ VDL++LY R +Q+ Y
Sbjct: 532 SLSRYRGMGGE--RPE-LSSMT-SKAWEKTKAKARKAVRKVAVDLLKLYAQRSQQEGHAY 587
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PT DQ KA V+RD+ E PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 588 PPDQPWQQELEESFPYQPTADQLKAVEAVKRDM-ESPQPMDRLVCGDVGFGKTEVAVRAI 646
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+AGKQ +LAPT +L +QH+ + ERF+ YP I++GLL+RF++ +E++ +
Sbjct: 647 FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-IQIGLLNRFRTASERQNIQQRLAT 705
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+++VGTH LL + +LGLLVVDEEQRFGV QKEKI + K VDVLTLSATPIPR
Sbjct: 706 GELDVVVGTHQLLSKGTQFRDLGLLVVDEEQRFGVNQKEKIKALKTQVDVLTLSATPIPR 765
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY+AL+G R+ SLI+TPPP R PIKTHL + E V +AI E+DRGGQVFYV+PR++G
Sbjct: 766 TLYMALSGVREMSLITTPPPSRRPIKTHLMPYDLEAVRTAISQEIDRGGQVFYVVPRVEG 825
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E LQ+ P + IA+AHGQ +LE TM F ++ICT I+ESGLDI N
Sbjct: 826 IEAIATRLQEMLPSLRIAVAHGQMPEGELEATMLAFNNNEADVMICTTIIESGLDIPRVN 885
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D Q+FGL+QLYQLRGRVGRA +AHA+LFYP +++LSDQA +RL A++E +LG
Sbjct: 886 TILIEDAQRFGLSQLYQLRGRVGRAGIQAHAWLFYPGETVLSDQARQRLRAIQEFTQLGS 945
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +D+ IRG G + G +Q+G + +G DL+ EML ESL ++ + V QI
Sbjct: 946 GYQLAMRDLEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLQEIRGQDIPQV--DDTQI 1003
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+++ +P++YI ++ M A+ Q L+Q +YG P S + LL+
Sbjct: 1004 DLSLTAFIPADYIPDIDAKMSAYRAV--ASAQTPADLLQIAADWSDRYGSLPASAQQLLR 1061
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVH 790
+ ++++A +G +I K V ++T M +K + + + S +
Sbjct: 1062 VMELKQVAKSLGFARIRTESKQHVILETPMEAPAWKRLHEKLPSNLQ 1108
>gi|67921537|ref|ZP_00515055.1| Transcription-repair coupling factor [Crocosphaera watsonii WH 8501]
gi|67856649|gb|EAM51890.1| Transcription-repair coupling factor [Crocosphaera watsonii WH 8501]
Length = 1160
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 301/640 (47%), Positives = 419/640 (65%), Gaps = 21/640 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQ-A 204
S KVD L GDYVVHK GIGKF+ + +S EY+ ++Y DG+ ++P
Sbjct: 485 SKKVDLQQLHQGDYVVHKSHGIGKFLKL------ESLATREYLVVQYEDGILRIPADSFD 538
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
S YR+ E+K P+ L K++ T W++ K K + I+K+ VDL+ LY R K
Sbjct: 539 SVSRYRHT---ESKPPK-LHKMTGKT-WQKSKQKVRKNIRKLAVDLINLYAKRAKNIGFT 593
Query: 265 YP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
YP P E FPY+PTPDQ KA +V+ DL E + PMDRL+CGDVGFGKTEVA+RA
Sbjct: 594 YPLDTPWQQELEDSFPYQPTPDQLKAIQEVKIDL-ESDRPMDRLVCGDVGFGKTEVAVRA 652
Query: 324 IFCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
IF V++G KQ + LAPT +L +QH+ + ERF+ YP I +GLL+RF++ +EK+E + +
Sbjct: 653 IFKAVTSGHKQVVFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTASEKKEIIQRL 711
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
G L+I+VGT LLG V +N+LGLLV+DEEQRFGV QKEKI K +DVLTLSATPI
Sbjct: 712 STGELDIVVGTQQLLGKSVKFNDLGLLVIDEEQRFGVNQKEKIKDMKSHIDVLTLSATPI 771
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTLY++L+G R+ SLI+TPPP R PIKTHLS ++ + V +AI+ ELDRGGQVFYV+PR+
Sbjct: 772 PRTLYMSLSGIREMSLITTPPPSRRPIKTHLSRYNPDAVRNAIRNELDRGGQVFYVVPRV 831
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+G+EE +++ P +AI HGQ +LE TM F G IL+CT IVESGLDI
Sbjct: 832 EGIEEVAAQIKRMVPSARMAIGHGQMDVNELEMTMLGFNNGDADILVCTTIVESGLDIPR 891
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NTIIV+D Q+FGLAQLYQLRGRVGRA +AHA+L YP KS L++ A +RL AL+E +L
Sbjct: 892 VNTIIVEDAQKFGLAQLYQLRGRVGRAGIQAHAWLLYPSKSELTETARKRLRALQEFSQL 951
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 682
G G+QLA +DM IRG G + G +Q+G + ++G +L+ EML ES+ ++ + V +
Sbjct: 952 GSGYQLATRDMEIRGVGNLLGAEQSGQMESIGFELYMEMLQESIREIQGQEIPKV--EDT 1009
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
Q+D+ + +P++YI +E M A Q L Q +YGK P ++ L
Sbjct: 1010 QVDLQLTAFIPTDYIPDMEQKMSAYRAIAVANSQK--ELSQIAAEWSDRYGKLPVPVQQL 1067
Query: 743 LKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMM 781
L+ + ++++A +G ++I GK + ++T M + +K++
Sbjct: 1068 LQVIELKQLAKSLGFSRIKPEGKQHIVLETPMEEPAWKLL 1107
>gi|166364821|ref|YP_001657094.1| transcription-repair coupling factor [Microcystis aeruginosa
NIES-843]
gi|166087194|dbj|BAG01902.1| transcription-repair coupling factor [Microcystis aeruginosa
NIES-843]
Length = 1160
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 304/688 (44%), Positives = 442/688 (64%), Gaps = 26/688 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI----EYVFIEYADGMAKLPV 201
S +VD LR D+VVHK GIG+F IK + Q+ + + +Y+ I+YADG+ ++P
Sbjct: 479 SVQVDVNKLRPLDFVVHKHHGIGQF--IKLEKQESTISGVVQGRDYLVIKYADGLLRVPA 536
Query: 202 KQASRM-LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
+ YR+ E + L K+S AWE K + + +++K+ VDL+ +Y R ++
Sbjct: 537 DSVDNLSRYRHTGNQEPE----LHKISGK-AWEATKARVRKSVKKLAVDLINIYAQRAQK 591
Query: 261 KRPPYP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
YP NP E FPY+PT DQ KA DV+RDL E + PMDRL+CGDVGFGKTEV
Sbjct: 592 SGFAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEV 650
Query: 320 ALRAIFCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378
A+RAIF V+ G KQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF++ +EK++
Sbjct: 651 AIRAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDI 709
Query: 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLS 438
+ +K G L+I+VGT LL V + +LGLLV+DEEQRFGV QKEKI +FK ++DVLTL+
Sbjct: 710 VQRLKTGELDIVVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLT 769
Query: 439 ATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYV 498
ATPIPRTLY++L+G R+ SLI+TPPP R PI+THLS+++ + + +AI+ ELDRGGQ+FYV
Sbjct: 770 ATPIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQIFYV 829
Query: 499 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558
+PRI+G+EE +Q PG IAI HG+ +LE TM F G IL+CT IVESGL
Sbjct: 830 VPRIEGIEEKAAAIQGMIPGARIAIGHGRMDEAELETTMLAFNNGEADILVCTTIVESGL 889
Query: 559 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 618
DI NTII++D Q+FGLAQLYQLRGRVGR+ +AHA+L YP K+ L++ A ERL A++E
Sbjct: 890 DIPRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKAELTETARERLKAIQE 949
Query: 619 CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP 678
+LG G+QLA +D+ IRG G + G +Q+G + +G DL+ EML E+L ++ + V
Sbjct: 950 FTQLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV- 1008
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+ QID+ + +P++YI+ E M++ A Q L Q L +YG P
Sbjct: 1009 -EDTQIDLKLTAFIPNDYISDPEQKMDVYRAIATANSQK--NLGQIAADLVDRYGAIPSP 1065
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFE 797
+ L K + ++ +A +G ++I GK + ++T M + +K++ + + + ++ +
Sbjct: 1066 VAQLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI-QSRFVYS 1124
Query: 798 GDQIKAE-LLLELPREQ---LLNWIFQC 821
Q+ L L P +Q LL+W+ +C
Sbjct: 1125 PKQVTVRGLGLVKPPQQLDSLLDWLAKC 1152
>gi|33863047|ref|NP_894607.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9313]
gi|33634964|emb|CAE20950.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9313]
Length = 1193
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 303/681 (44%), Positives = 437/681 (64%), Gaps = 25/681 (3%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRML 208
VDP + SGD+VVH+ GIG+F +K + S +Y+ IEY DG + Q L
Sbjct: 495 VDPNKMCSGDFVVHRNHGIGRF--LKLEKLAISGEVRDYLVIEYLDGTLSVAADQLGS-L 551
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY--- 265
RY +E+ P L+++ TT W++ K + + ++K+ +DL++LY RL+ P Y
Sbjct: 552 GRYRSTSES--PPKLNRMGGTT-WQKVKERTRKLVRKVAMDLVKLYAERLQA--PGYAFP 606
Query: 266 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
P P E FPYEPTPDQ KA +DV+RD+ E PMDRL+CGDVGFGKTEVA+RAIF
Sbjct: 607 PDGPWQIELEESFPYEPTPDQVKAVVDVKRDM-EAAQPMDRLVCGDVGFGKTEVAIRAIF 665
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
+++G+Q +LAPT VLA+QH+ +S+RF+ YP IKV LL+RF++ +E++ L+ +K G
Sbjct: 666 KAITSGRQIAMLAPTTVLAQQHWRTLSDRFAPYP-IKVALLNRFRTSSERKSILNGLKEG 724
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++ +VGTH LL + LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIPRT
Sbjct: 725 TIDAVVGTHQLLSKNTTFQKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRT 784
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
LY++L+G R+ SLI+TPPP R PIKTHL+AF +E V S+I+ ELDRGGQVFYV+PR++G+
Sbjct: 785 LYMSLSGVREMSLITTPPPLRRPIKTHLAAFDEEAVRSSIRQELDRGGQVFYVVPRVEGI 844
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
E+ LQQ P + + +AHGQ +LE +M F G +++CT IVESGLDI NT
Sbjct: 845 EDVARQLQQMLPDLKLLVAHGQMAEGELESSMVAFNAGEADLMLCTTIVESGLDIPRVNT 904
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
I+++D +FGLAQLYQLRGRVGR+ +AHA+LFYP + LSD A +RL A++E +LG G
Sbjct: 905 ILIEDAHKFGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSDTARQRLRAIQEFAQLGSG 964
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
+QLA +DM IRG G + G +Q+G + +G DL+ EML ESL+++ + SV QID
Sbjct: 965 YQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQGIPSV--DDTQID 1022
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ + +P+E+I + + A A + L++ S +YG P ++ LL+
Sbjct: 1023 LPVTAFVPAEWIVDGDEKIAAYRAAANCASHE--SLIELAASWTDRYGAIPGPVQSLLQL 1080
Query: 746 LYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL 805
+ ++ +A GI++I + M+T M + F+++ + +H + G KA++
Sbjct: 1081 MELKLLARRCGISRIKPEKPNIAMETPMEEPAFRLLRQGLPQHLHGRLIYQTGSGNKAKV 1140
Query: 806 L--------LELPREQLLNWI 818
L +E EQL+ W+
Sbjct: 1141 LARGLSVLPMEKQLEQLMEWL 1161
>gi|307154808|ref|YP_003890192.1| transcription-repair coupling factor [Cyanothece sp. PCC 7822]
gi|306985036|gb|ADN16917.1| transcription-repair coupling factor [Cyanothece sp. PCC 7822]
Length = 1169
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 300/694 (43%), Positives = 447/694 (64%), Gaps = 26/694 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +V+ LR GDYVVH+ GIGKF IK ++ + EYV I+YADG ++P
Sbjct: 496 SKQVNLDKLRPGDYVVHRHHGIGKF--IKLEILESR----EYVLIQYADGTLRIPSDSLD 549
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L RY P L +++ AWE+ K K + +++K+ VDL+ LY R +Q+ +
Sbjct: 550 S-LSRYR--QTGNHPPELHRMAGK-AWEQTKQKVRKSVKKLAVDLINLYAKRAQQEGFSF 605
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PTPDQ KA +V+RDL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 606 PTDSPWQQELEDSFPYQPTPDQLKAVQEVKRDL-ESDRPMDRLVCGDVGFGKTEVAVRAI 664
Query: 325 FCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V++G KQ LAPT +L +QH+ + ERF+ YP I +GLL+RF++ +E ++ L +
Sbjct: 665 FKAVTSGNKQVAFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTPSENKDILQRLS 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+I+VGTH LL +++ + +LGLLV+DEEQRFGV QKEKI + K VDVLTL+ATPIP
Sbjct: 724 TGELDIVVGTHQLLSNKIKFKDLGLLVIDEEQRFGVNQKEKIKTLKTQVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHLS ++ + + +AI+ ELDRGGQ+FYV+PR++
Sbjct: 784 RTLYMSLSGVREMSLITTPPPSRRPIKTHLSPYNSDVIRTAIRNELDRGGQIFYVVPRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE ++Q P IAIAHGQ +LE TM F G +L+CT I+ESGLDI
Sbjct: 844 GIEEVAAEIRQMVPTARIAIAHGQMDVSELETTMLAFNNGEADVLVCTTIIESGLDIPRV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTIIV+D Q+FGL+QLYQLRGRVGR+ +AHA+L YP K+ L++ A +RL AL+E +LG
Sbjct: 904 NTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLVYPHKAALTETARQRLRALQEFTQLG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G DL+ EML +++ ++ + V + Q
Sbjct: 964 SGYQLATRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLQDAIREIQGQEIPKV--EDTQ 1021
Query: 684 IDININPRLPSEYINHLENPME---MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
ID+ + +P++YI+ + M+ + A A+ L Q L +YG P +E
Sbjct: 1022 IDLKLTAFIPADYISDINQKMDAYRTIATANSPAD-----LKQIAADLCDRYGALPSPVE 1076
Query: 741 ILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGD 799
LL+ + ++++A +G ++I GK V ++T M + +K++ +++ + + +
Sbjct: 1077 QLLQVIELKQLAKSLGFSRIKPDGKQHVVLETPMEEPAWKLLEENLPKHL-QGRFVYSPK 1135
Query: 800 QIKAELLLELPREQLLNWIFQCLAELYASLPALI 833
++ L + ++ L + + L ++ +LP +I
Sbjct: 1136 KVTVRGLGVVKPKKQLESLIEWLEKMKGALPEII 1169
>gi|425460471|ref|ZP_18839952.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9808]
gi|389826834|emb|CCI22364.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9808]
Length = 1160
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 303/693 (43%), Positives = 441/693 (63%), Gaps = 22/693 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI----EYVFIEYADGMAKLPV 201
S +VD LR D+VVHK GIG+F IK + Q+ + + +Y+ I+YADG+ ++P
Sbjct: 479 SVQVDVNKLRPLDFVVHKHHGIGQF--IKLEKQESTISGVVQGRDYLVIKYADGLLRVPA 536
Query: 202 KQASRM-LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
+ YR+ E + L K+S AWE K + + +++K+ VDL+ +Y R ++
Sbjct: 537 DSVDNLSRYRHTGNQEPE----LHKISGK-AWEATKARVRKSVKKLAVDLINIYAQRAQK 591
Query: 261 KRPPYP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
YP NP E FPY+PT DQ KA DV+RDL E + PMDRL+CGDVGFGKTEV
Sbjct: 592 SGFAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEV 650
Query: 320 ALRAIFCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378
A+RAIF V+ G KQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF++ +EK++
Sbjct: 651 AIRAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDI 709
Query: 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLS 438
+ +K G L+I+VGT LL V + +LGLLV+DEEQRFGV QKEKI +FK ++DVLTLS
Sbjct: 710 VQRLKTGELDIVVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLS 769
Query: 439 ATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYV 498
ATPIPRTLY++L+G R+ SLI+TPPP R PI+THLS+++ + + +AI+ ELDRGGQ+FYV
Sbjct: 770 ATPIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDAIRTAIRNELDRGGQIFYV 829
Query: 499 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558
+PRI+G+EE +Q PG I+I HG+ +LE TM F G IL+CT IVESGL
Sbjct: 830 VPRIEGIEEKAAAIQGMIPGARISIGHGRMDEAELETTMLAFNNGEADILVCTTIVESGL 889
Query: 559 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 618
DI NTII++D Q+FGLAQLYQLRGRVGR+ +AHA+L YP K L++ A ERL A++E
Sbjct: 890 DIPRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKGELTETARERLKAIQE 949
Query: 619 CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP 678
+LG G+QLA +D+ IRG G + G +Q+G + +G DL+ EML E+L ++ + V
Sbjct: 950 FTQLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV- 1008
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+ QID+ + +P++YI+ E M++ A Q L Q L +YG P
Sbjct: 1009 -EDTQIDLKLTAFIPNDYISDPEQKMDVYRAIATANSQK--TLGQIAADLVDRYGAIPSP 1065
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFE 797
+ L K + ++ +A +G ++I GK + ++T M + +K++ + + + ++ +
Sbjct: 1066 VAQLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI-QSRFVYS 1124
Query: 798 GDQIKAELLLELPREQLLNWIFQCLAELYASLP 830
Q+ L + Q L+ + + LA+ LP
Sbjct: 1125 PKQVTVRGLGAVKPPQQLDSLLEWLAKCKDGLP 1157
>gi|443658327|ref|ZP_21132145.1| transcription-repair coupling factor [Microcystis aeruginosa
DIANCHI905]
gi|443332989|gb|ELS47569.1| transcription-repair coupling factor [Microcystis aeruginosa
DIANCHI905]
Length = 1169
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 304/693 (43%), Positives = 441/693 (63%), Gaps = 22/693 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI----EYVFIEYADGMAKLPV 201
S +VD LR D+VVHK GIG+F IK + Q+ + + +Y+ I+YADG+ ++P
Sbjct: 488 SVQVDVNKLRPLDFVVHKHHGIGQF--IKLEKQESTISGVVQGRDYLVIKYADGLLRVPA 545
Query: 202 KQASRM-LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
+ YR+ T+ P L +S AWE K + + +++K+ VDL+ +Y R ++
Sbjct: 546 DSLDNLSRYRHT---GTQEPE-LHNISGK-AWEATKARVRKSVKKLAVDLINIYAQRAQK 600
Query: 261 KRPPYP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
YP NP E FPY+PT DQ KA DV+RDL E + PMDRL+CGDVGFGKTEV
Sbjct: 601 SGFAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEV 659
Query: 320 ALRAIFCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378
A+RAIF V+ G KQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF++ +EK++
Sbjct: 660 AIRAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDI 718
Query: 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLS 438
+ +K G L+I+VGT LL V + +LGLLV+DEEQRFGV QKEKI +FK ++DVLTLS
Sbjct: 719 VQRLKTGELDIVVGTQLLLSKAVEFRDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLS 778
Query: 439 ATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYV 498
ATPIPRTLY++L+G R+ SLI+TPPP R PI+THLS+++ + + +AI+ ELDRGGQ+FYV
Sbjct: 779 ATPIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQIFYV 838
Query: 499 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558
+PRI+G+EE +Q PG IAI HG+ +LE TM F G IL+CT IVESGL
Sbjct: 839 VPRIEGIEEKAAVIQGMIPGARIAIGHGRMDEAELETTMLAFNNGEADILVCTTIVESGL 898
Query: 559 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 618
DI NTII++D Q+FGLAQLYQLRGRVGR+ +AHA+L YP K L++ A ERL A++E
Sbjct: 899 DIPRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKGELTETARERLKAIQE 958
Query: 619 CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP 678
+LG G+QLA +D+ IRG G + G +Q+G + +G DL+ EML E+L ++ + V
Sbjct: 959 FTQLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV- 1017
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+ QID+ + +P++YI+ E M++ A Q L Q L +YG P
Sbjct: 1018 -EDTQIDLKLTAFIPNDYISDPEQKMDVYRAIATANSQK--TLGQIAADLVDRYGAIPSP 1074
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFE 797
+ L K + ++ +A +G ++I GK + ++T M + +K++ + + + ++ +
Sbjct: 1075 VAQLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI-QSRFVYS 1133
Query: 798 GDQIKAELLLELPREQLLNWIFQCLAELYASLP 830
Q+ L + Q L+ + + LA+ LP
Sbjct: 1134 PKQVTVRGLGAVKPPQQLDSLLEWLAKCKDGLP 1166
>gi|172038623|ref|YP_001805124.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51142]
gi|354554037|ref|ZP_08973342.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51472]
gi|171700077|gb|ACB53058.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51142]
gi|353553716|gb|EHC23107.1| transcription-repair coupling factor [Cyanothece sp. ATCC 51472]
Length = 1159
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 301/639 (47%), Positives = 413/639 (64%), Gaps = 19/639 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S KVD L GDYVVHK GIGKF+ + +S EY+ ++YADG+ ++P
Sbjct: 485 SKKVDLQQLHPGDYVVHKSHGIGKFLKL------ESLATREYLVVQYADGILRIPADSFD 538
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L RY T P L K++ T W++ K K + I+K+ VDL+ LY R K Y
Sbjct: 539 S-LSRYRHTGST--PPQLHKMTGKT-WQKSKQKVRKNIKKLAVDLINLYAKRAKNTGFTY 594
Query: 266 P-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P P E FPY+PTPDQ KA DV+ DL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 595 PLDTPWQQELEDSFPYQPTPDQLKAIQDVKIDL-ESDRPMDRLVCGDVGFGKTEVAVRAI 653
Query: 325 FCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V++G KQ LAPT +L +QH+ + ERF+ YP I +GLL+RF++ +EK+E + +
Sbjct: 654 FKAVTSGHKQVAFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTTSEKKEIIQRLA 712
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+I+VGT LLG V + +LGLLVVDEEQRFGV QKEKI K VDVLTL+ATPIP
Sbjct: 713 TGELDIVVGTQQLLGKSVKFKDLGLLVVDEEQRFGVNQKEKIKEIKSHVDVLTLTATPIP 772
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHLS ++ + V +AI+ ELDRGGQVFYV+PR++
Sbjct: 773 RTLYMSLSGIREMSLITTPPPSRRPIKTHLSRYNPDVVRTAIRNELDRGGQVFYVVPRVE 832
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE ++ P +AIAHGQ +LE TM F G IL+CT IVESGLDI
Sbjct: 833 GIEEVAAQIKTMVPSARMAIAHGQMDVNELEITMLSFNNGDADILVCTTIVESGLDIPRV 892
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTIIV+D Q+FGLAQLYQLRGRVGR+ +AHA+L YP K+ L++ A +RL AL+E +LG
Sbjct: 893 NTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPSKAQLTETARQRLRALQEFSQLG 952
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + ++G +L+ EML E++ ++ + V + Q
Sbjct: 953 SGYQLATRDMEIRGVGNLLGAEQSGQMESIGFELYMEMLQEAIREIQGQEIPKV--EDTQ 1010
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ + +P+EYI +E M A + L Q +YG P +E LL
Sbjct: 1011 IDLQLTAFIPTEYIPDMEQKMSAYRGIAVANSKK--ELAQIAAEWNDRYGNLPVPVEQLL 1068
Query: 744 KKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMM 781
+ + ++++A +G ++I GK + ++T M + +K++
Sbjct: 1069 QVMELKQLAKSLGFSRIKPEGKQHIVLETPMEEPAWKLL 1107
>gi|425437761|ref|ZP_18818176.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9432]
gi|389677224|emb|CCH93819.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
9432]
Length = 1169
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 303/693 (43%), Positives = 441/693 (63%), Gaps = 22/693 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI----EYVFIEYADGMAKLPV 201
S +VD LR D+VVHK GIG+F IK + Q+ + + +Y+ I+YADG+ ++P
Sbjct: 488 SVQVDVNKLRPLDFVVHKHHGIGQF--IKLEKQESTISGVVQGRDYLVIKYADGLLRVPA 545
Query: 202 KQASRM-LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
+ YR+ E + L K+S AWE K + + +++K+ VDL+ +Y R ++
Sbjct: 546 DSLDNLSRYRHTGNQEPE----LHKISGK-AWEATKARVRKSVKKLAVDLINIYAQRAQK 600
Query: 261 KRPPYP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
YP NP E FPY+PT DQ KA DV+RDL E + PMDRL+CGDVGFGKTEV
Sbjct: 601 SGFAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEV 659
Query: 320 ALRAIFCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378
A+RAIF V+ G KQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF++ +EK++
Sbjct: 660 AIRAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDI 718
Query: 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLS 438
+ +K G L+I+VGT LL V + +LGLLV+DEEQRFGV QKEKI +FK ++DVLTLS
Sbjct: 719 VQRLKTGELDIVVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLS 778
Query: 439 ATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYV 498
ATPIPRTLY++L+G R+ SLI+TPPP R PI+THLS+++ + + +AI+ ELDRGGQ+FYV
Sbjct: 779 ATPIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQIFYV 838
Query: 499 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558
+PRI+G+EE +Q PG I+I HG+ +LE TM F G IL+CT IVESGL
Sbjct: 839 VPRIEGIEEKAAAIQGMIPGARISIGHGRMDESELETTMLAFNNGEADILVCTTIVESGL 898
Query: 559 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 618
DI NTII++D Q+FGLAQLYQLRGRVGR+ +AHA+L YP K L++ A ERL A++E
Sbjct: 899 DIPRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKGELTETARERLKAIQE 958
Query: 619 CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP 678
+LG G+QLA +D+ IRG G + G +Q+G + +G DL+ EML E+L ++ + V
Sbjct: 959 FTQLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV- 1017
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+ QID+ + +P++YI+ E M++ A Q L Q L +YG P
Sbjct: 1018 -EDTQIDLKLTAFIPNDYISDPEQKMDVYRAIATANSQK--TLGQIAADLVDRYGAIPSP 1074
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFE 797
+ L K + ++ +A +G ++I GK + ++T M + +K++ + + + ++ +
Sbjct: 1075 VAQLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI-QSRFVYS 1133
Query: 798 GDQIKAELLLELPREQLLNWIFQCLAELYASLP 830
Q+ L + Q L+ + + LA+ LP
Sbjct: 1134 PKQVTVRGLGTVKPPQQLDSLLEWLAKCKDGLP 1166
>gi|428221058|ref|YP_007105228.1| transcription-repair coupling factor Mfd [Synechococcus sp. PCC 7502]
gi|427994398|gb|AFY73093.1| transcription-repair coupling factor Mfd [Synechococcus sp. PCC 7502]
Length = 1128
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 301/652 (46%), Positives = 423/652 (64%), Gaps = 18/652 (2%)
Query: 135 GDSGY--NGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIE 191
G SGY S KVD L +GDYVVH+ GIG+F+ ++ + K++ EY+ I+
Sbjct: 442 GSSGYVRKRRVAASKKVDLDKLSAGDYVVHRHHGIGQFLRLESLTINKETR---EYLVIQ 498
Query: 192 YADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLM 251
Y DG+ ++ Q L R+ +TK TL+K++ AW K + +I+K+ +DL+
Sbjct: 499 YEDGLLRVVADQVGS-LSRFRSSGDTKP--TLNKMTGK-AWANTTNKVRKSIKKIAIDLL 554
Query: 252 ELYLHRLKQKRPPYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICG 310
ELY R +Q +P + P E FPY+PTPDQ KA DV++D+ E + PMDRL+CG
Sbjct: 555 ELYARRSQQVGYAFPPDMPWQQEMEDSFPYQPTPDQLKATQDVKQDM-ESDRPMDRLVCG 613
Query: 311 DVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQ 370
DVGFGKTEVA+RA+F ++AGKQ+ +LAPT +LA+QH+ + ERF+ YP I + LL+RF+
Sbjct: 614 DVGFGKTEVAIRALFKALTAGKQSALLAPTTILAQQHYHTMQERFAPYP-INIALLNRFK 672
Query: 371 SKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKI 430
S E++E + + G L+++VGTH LL + + NLGLLV+DEEQRFGV QKEKI SFK
Sbjct: 673 STMERKEIIQKLATGELDLVVGTHQLLSKEINFKNLGLLVIDEEQRFGVAQKEKIKSFKT 732
Query: 431 SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELD 490
VDVLTLSATPIPRTLY++L+G R+ SLI+TPPP R IKTHLS + E + SAI+ ELD
Sbjct: 733 EVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPSRRSIKTHLSRYDPEAIRSAIRQELD 792
Query: 491 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILIC 550
RGGQVFYV+PRI+G+EE L++ P +AIAHGQ +LE TM F G IL+C
Sbjct: 793 RGGQVFYVVPRIEGIEETSTKLREMIPSARLAIAHGQMPEGELETTMLTFNSGEADILVC 852
Query: 551 TNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQAL 610
T I+ESGLDI NTII++D Q+ GLAQLYQLRGRVGR+ +AHA+LFY K LS+ A
Sbjct: 853 TTIIESGLDIPRVNTIIIEDAQKLGLAQLYQLRGRVGRSGVQAHAWLFYQAKGELSEPAR 912
Query: 611 ERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD 670
+RL A++E LG G+QLA +DM IRG G++ G +Q+G + +G DL+ EML E+++++
Sbjct: 913 QRLRAIQEFTHLGSGYQLAMRDMEIRGVGSLLGAEQSGQMEAIGFDLYMEMLQEAIAEIK 972
Query: 671 EHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRR 730
+ V QID+ + +P+ YI + M AA L Q E R
Sbjct: 973 GSEIPQV--DDTQIDLPLTAFIPNNYIPDPDQKMAAYRAL--AAVNSRRELNQILEEWRD 1028
Query: 731 QYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMM 781
+YG P + + L+K + ++++A IG ++I GK + ++T M + +K +
Sbjct: 1029 RYGTVPAATQQLVKVMELKQVAKKIGFSRIKPEGKQNIILETKMEEPAWKTL 1080
>gi|428779387|ref|YP_007171173.1| transcription-repair coupling factor Mfd [Dactylococcopsis salina PCC
8305]
gi|428693666|gb|AFZ49816.1| transcription-repair coupling factor Mfd [Dactylococcopsis salina PCC
8305]
Length = 1160
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 304/689 (44%), Positives = 436/689 (63%), Gaps = 25/689 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VD LR DYVVH++ GIGKF+ + +S EY+ +EYADG+ ++P
Sbjct: 485 SKQVDLNKLRPNDYVVHRQHGIGKFLRL------ESWETREYLVVEYADGLLRVPADSLD 538
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L RY E K P+ L+++S +W+ K K + A++K+ VDL++LY R + Y
Sbjct: 539 S-LSRYRHLGEGK-PQ-LNRMSGK-SWQNTKNKVEKAVKKVAVDLLDLYAKRSQLSGYAY 594
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P++ E FPY+ TPDQ KA DV+RDL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 595 PQDTVWQQELEDSFPYQATPDQLKAVQDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAI 653
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F +V +GKQ LAPT +L +QH+ + ERF+ YP I +GLL+RF++ E+++ L +
Sbjct: 654 FKIVMSGKQIAFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTSNERKDILKRLAT 712
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+I+VGTH LL V Y +LG+LV+DEEQRFGV QKEKI + K VDVLTL+ATPIPR
Sbjct: 713 GELDIVVGTHQLLNKSVKYKDLGMLVIDEEQRFGVNQKEKIKAMKTEVDVLTLTATPIPR 772
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PIKTHLS + E + +AI+ ELDRGGQVFYV+PR++G
Sbjct: 773 TLYMSLSGIREMSLITTPPPSRRPIKTHLSPYDTEAIRTAIRNELDRGGQVFYVVPRVEG 832
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ PG I+I HGQ +LE TM F G IL+CT I+ESGLDI N
Sbjct: 833 IEETAGKLREMVPGARISIGHGQMEEAELESTMLTFNNGDADILVCTTIIESGLDIPRVN 892
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+V+D Q+FGL+QLYQLRGRVGR+ +AHA+L YP +S LSD A +RL AL+E +LG
Sbjct: 893 TIVVEDSQKFGLSQLYQLRGRVGRSGVQAHAWLLYPKQSSLSDTAKKRLRALQEFTQLGS 952
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +D+ IRG G + G +Q+G + VG DL+ ML E++ +V + V + QI
Sbjct: 953 GYQLAMRDLEIRGVGELLGAKQSGQMNAVGFDLYMSMLQEAIQEVQGQDIPQV--EDTQI 1010
Query: 685 DININPRLPSEYINHLENPME---MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
D+ + +PS YI + M+ V A E D Q R +YG+ P +
Sbjct: 1011 DLKLTAFVPSNYITDPDQKMDAYRTVTMANSKKELD-----QIRNDWRDRYGELPAPVNQ 1065
Query: 742 LLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 800
LL+ + ++++ +G ++I GK + ++T M + +K + + + ++ + + +
Sbjct: 1066 LLQIMELKQITKSLGFSRIKPEGKQHIVLETKMEEPAWKRVQEHLPKKIA-SRFVYSKGK 1124
Query: 801 IKAELLLELPREQLLNWIFQCLAELYASL 829
+ L L +Q ++ + L +L SL
Sbjct: 1125 VTVRGLGVLKTQQQIDNLINWLGQLRESL 1153
>gi|440754291|ref|ZP_20933493.1| transcription-repair coupling factor [Microcystis aeruginosa TAIHU98]
gi|440174497|gb|ELP53866.1| transcription-repair coupling factor [Microcystis aeruginosa TAIHU98]
Length = 1169
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 302/693 (43%), Positives = 441/693 (63%), Gaps = 22/693 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI----EYVFIEYADGMAKLPV 201
S +VD LR D+VVHK GIG+F IK + Q+ + + +Y+ I+YADG+ ++P
Sbjct: 488 SVQVDVNKLRPLDFVVHKHHGIGQF--IKLEKQESTISGVVQGRDYLVIKYADGLLRVPA 545
Query: 202 KQASRM-LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
+ YR+ E + L K+S AWE K + + +++K+ VDL+ +Y R ++
Sbjct: 546 DSVDNLSRYRHTGNQEPE----LHKISGK-AWEATKARVRKSVKKLAVDLINIYAQRAQK 600
Query: 261 KRPPYP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
YP NP E FPY+PT DQ KA DV+RDL E + PMDRL+CGDVGFGKTEV
Sbjct: 601 SGFAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEV 659
Query: 320 ALRAIFCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378
A+RAIF V+ G KQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF++ +EK++
Sbjct: 660 AIRAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDI 718
Query: 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLS 438
+ +K G L+I+VGT LL V + +LGLLV+DEEQRFGV QKEKI +FK ++DVLTL+
Sbjct: 719 VQRLKTGELDIVVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLT 778
Query: 439 ATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYV 498
ATPIPRTLY++L+G R+ SLI+TPPP R PI+THLS+++ + + +AI+ ELDRGGQ+FYV
Sbjct: 779 ATPIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQIFYV 838
Query: 499 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558
+PRI+G+EE +Q PG I+I HG+ +LE TM F G IL+CT IVESGL
Sbjct: 839 VPRIEGIEEKAAAIQGMIPGARISIGHGRMDESELETTMLAFNNGEADILVCTTIVESGL 898
Query: 559 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 618
DI NTII++D Q+FGLAQLYQLRGRVGR+ +AHA+L YP K L++ A ERL A++E
Sbjct: 899 DIPRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKGELTETARERLKAIQE 958
Query: 619 CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP 678
+LG G+QLA +D+ IRG G + G +Q+G + +G DL+ EML E+L ++ + V
Sbjct: 959 FTQLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV- 1017
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+ QID+ + +P++YI+ E M++ A Q L Q L +YG P
Sbjct: 1018 -EDTQIDLKLTAFIPNDYISDPEQKMDVYRAIATANSQK--TLGQIAADLVDRYGAIPSP 1074
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFE 797
+ L K + ++ +A +G ++I GK + ++T M + +K++ + + + ++ +
Sbjct: 1075 VAQLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI-QSRFVYS 1133
Query: 798 GDQIKAELLLELPREQLLNWIFQCLAELYASLP 830
Q+ L + Q L+ + + LA+ LP
Sbjct: 1134 PKQVTVRGLGTVKPPQQLDSLLEWLAKCKDGLP 1166
>gi|425450357|ref|ZP_18830187.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
7941]
gi|389768841|emb|CCI06150.1| Transcription-repair-coupling factor [Microcystis aeruginosa PCC
7941]
Length = 1169
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 302/693 (43%), Positives = 441/693 (63%), Gaps = 22/693 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI----EYVFIEYADGMAKLPV 201
S +VD LR D+VVHK GIG+F IK + Q+ + + +Y+ I+YADG+ ++P
Sbjct: 488 SVQVDVNKLRPLDFVVHKHHGIGQF--IKLEKQESTISGVVQGRDYLVIKYADGLLRVPA 545
Query: 202 KQASRM-LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
+ YR+ E + L K+S AWE K + + +++K+ VDL+ +Y R ++
Sbjct: 546 DSVDNLSRYRHTGNQEPE----LHKISGK-AWEATKARVRKSVKKLAVDLINIYAQRAQK 600
Query: 261 KRPPYP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
YP NP E FPY+PT DQ KA DV+RDL E + PMDRL+CGDVGFGKTEV
Sbjct: 601 SGFAYPMDNPWQRELEDSFPYQPTADQLKAIQDVKRDL-ESDRPMDRLVCGDVGFGKTEV 659
Query: 320 ALRAIFCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378
A+RAIF V+ G KQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF++ +EK++
Sbjct: 660 AIRAIFKAVTTGHKQVALLAPTTILTQQHYHTLKERFAPYP-INVGLLNRFRTNSEKKDI 718
Query: 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLS 438
+ +K G L+I+VGT LL V + +LGLLV+DEEQRFGV QKEKI +FK ++DVLTL+
Sbjct: 719 VQRLKTGELDIVVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLT 778
Query: 439 ATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYV 498
ATPIPRTLY++L+G R+ SLI+TPPP R PI+THLS+++ + + +AI+ ELDRGGQ+FYV
Sbjct: 779 ATPIPRTLYMSLSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQIFYV 838
Query: 499 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558
+PRI+G+EE +Q PG I+I HG+ +LE TM F G IL+CT IVESGL
Sbjct: 839 VPRIEGIEEKAAAIQGMIPGARISIGHGRMDESELETTMLAFNNGEADILVCTTIVESGL 898
Query: 559 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 618
DI NTII++D Q+FGLAQLYQLRGRVGR+ +AHA+L YP K L++ A ERL A++E
Sbjct: 899 DIPRVNTIIIEDAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKGELTETARERLKAIQE 958
Query: 619 CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP 678
+LG G+QLA +D+ IRG G + G +Q+G + +G DL+ EML E+L ++ + V
Sbjct: 959 FTQLGSGYQLATRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQV- 1017
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+ QID+ + +P++YI+ E M++ A Q L Q L +YG P
Sbjct: 1018 -EDTQIDLKLTAFIPNDYISDPEQKMDVYRAIATANSQK--NLGQIAADLVDRYGAIPSP 1074
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFE 797
+ L K + ++ +A +G ++I GK + ++T M + +K++ + + + ++ +
Sbjct: 1075 VAQLFKVIELKHLAKSLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHI-QSRFVYS 1133
Query: 798 GDQIKAELLLELPREQLLNWIFQCLAELYASLP 830
Q+ L + Q L+ + + LA+ LP
Sbjct: 1134 PKQVTVRGLGAVKPPQQLDSLLEWLAKCKDGLP 1166
>gi|124023141|ref|YP_001017448.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9303]
gi|123963427|gb|ABM78183.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9303]
Length = 1193
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 302/681 (44%), Positives = 436/681 (64%), Gaps = 25/681 (3%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRML 208
VDP + SGD+VVH+ GIG+F +K + S +Y+ I+Y DG + Q L
Sbjct: 495 VDPNKMCSGDFVVHRNHGIGRF--LKLEKLAISGEVRDYLVIQYLDGTLSVAADQLGS-L 551
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY--- 265
RY +E+ P L+++ T AW++ K + + ++K+ +DL++LY RL+ P Y
Sbjct: 552 GRYRSTSES--PPKLNRMGGT-AWQKIKERTRKLVRKVAMDLVKLYAERLQA--PGYAFP 606
Query: 266 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
P P E FPYEPTPDQ KA +DV+RD+ E PMDRL+CGDVGFGKTEVA+RAIF
Sbjct: 607 PDGPWQIELEESFPYEPTPDQVKAVVDVKRDM-EAAQPMDRLVCGDVGFGKTEVAIRAIF 665
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
+++G+Q +LAPT VLA+QH+ +S+RF+ YP IKV LL+RF++ +E++ L+ +K G
Sbjct: 666 KAITSGRQIAMLAPTTVLAQQHWRTLSDRFAPYP-IKVALLNRFRTSSERKSILNGLKEG 724
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++ +VGTH LL + LGLLVVDEEQRFGV QKEKI + VDVLTLSATPIPRT
Sbjct: 725 TIDAVVGTHQLLSKNTTFQKLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRT 784
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
LY++L+G R+ SLI+TPPP R PIKTHL+AF +E V S+I+ ELDRGGQVFYV+PR++G+
Sbjct: 785 LYMSLSGVREMSLITTPPPLRRPIKTHLAAFDEEAVRSSIRQELDRGGQVFYVVPRVEGI 844
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
E+ LQQ P + + +AHGQ +LE +M F G +++CT IVESGLDI NT
Sbjct: 845 EDVASQLQQMLPDLKLLVAHGQMAEGELESSMVAFNAGEADLMLCTTIVESGLDIPRVNT 904
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
I+++D +FGLAQLYQLRGRVGR+ +AHA+LFYP + LSD A +RL A++E +LG G
Sbjct: 905 ILIEDAHKFGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSDAARQRLRAIQEFAQLGSG 964
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
+QLA +DM IRG G + G +Q+G + +G DL+ EML ESL+++ + SV QID
Sbjct: 965 YQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQGIPSV--DDTQID 1022
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ + +P+E+I + + A A + L++ S +YG P ++ LL+
Sbjct: 1023 LPVTAFVPAEWIVDGDEKIAAYRAAANCASHE--SLIELAASWTDRYGAIPGPVQSLLQL 1080
Query: 746 LYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL 805
+ ++ +A GI++I + M+T M + F+++ + +H + G KA++
Sbjct: 1081 MELKLLARRCGISRIKPEKPNIAMETPMEEPAFRLLRQGLPQHLHGRLIYQTGSGNKAKV 1140
Query: 806 L--------LELPREQLLNWI 818
L +E EQL+ W+
Sbjct: 1141 LARGLSVLPMEKQLEQLMEWL 1161
>gi|282896750|ref|ZP_06304758.1| Transcription-repair coupling factor [Raphidiopsis brookii D9]
gi|281198468|gb|EFA73356.1| Transcription-repair coupling factor [Raphidiopsis brookii D9]
Length = 1202
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 306/682 (44%), Positives = 431/682 (63%), Gaps = 17/682 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP LR+GD+VVH+ GIGKFV ++ D T +Y+ I+YADG+ ++ Q
Sbjct: 500 SKQVDPNKLRAGDFVVHRSHGIGKFVKLESLTINDETR--DYLVIQYADGVLRVAADQVG 557
Query: 206 RM-LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ +R NL RP L K++ AW+ K K K AI+K+ VDL++LY R +Q+
Sbjct: 558 SLSRFRTNL----DRPPQLHKMTGK-AWDNTKNKVKKAIKKLAVDLLQLYAARSQQEGFS 612
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
YP++ P E FPY+PT DQ KA DV+RD+ E PMDRL+CGDVGFGKTEVA+RA
Sbjct: 613 YPQDMPWQEEMEDSFPYQPTIDQLKAVQDVKRDM-ESPRPMDRLVCGDVGFGKTEVAIRA 671
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF V+AGKQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF+S EK +
Sbjct: 672 IFKAVTAGKQVALLAPTTILTQQHYHTIKERFAPYP-IHVGLLNRFRSPEEKRNIQKRLL 730
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+I+VGTH LLG V + +LGLLV+DEEQRFGV QKEKI + K +DVLTLSATPIP
Sbjct: 731 TGELDIVVGTHQLLGKGVQFKDLGLLVIDEEQRFGVNQKEKIKTLKTHLDVLTLSATPIP 790
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PI+THL+ + + V SAI+ ELDRGGQVFYV+PR++
Sbjct: 791 RTLYMSLSGIREMSLITTPPPTRRPIQTHLAPLNPQIVSSAIRQELDRGGQVFYVVPRVE 850
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE L++ P IAHGQ QLE TM F+ IL+CT I+ESGLDI
Sbjct: 851 GIEETTTRLREMIPSGRFVIAHGQMDESQLESTMLTFSNHEADILVCTTIIESGLDIPRV 910
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D +FGL+QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG
Sbjct: 911 NTILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLG 970
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V Q
Sbjct: 971 SGYQLAMRDMEIRGVGNLLGAEQSGQMNAIGFDLYMEMLEEAIREIRGQEIPKV--DDTQ 1028
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+N+ +P+ YI ++ M A ++ L +YG P +L
Sbjct: 1029 IDLNLTAFIPATYITDIDQKMSAYRAVATAKSKE--ELKAIAAEWNDRYGIIPPPANQML 1086
Query: 744 KKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 802
+ + ++++A ++G ++I K + ++T M + + ++ +T E +N + ++
Sbjct: 1087 RVMELKQLAKNLGFSRIKPENKQHIVLETPMEEPAWNLLAQRLT-ENMKNRFVYSPGKVT 1145
Query: 803 AELLLELPREQLLNWIFQCLAE 824
A L EQ L + LA+
Sbjct: 1146 ARGLAVFKAEQQLETLIDVLAK 1167
>gi|443320108|ref|ZP_21049232.1| transcription-repair coupling factor Mfd [Gloeocapsa sp. PCC 73106]
gi|442790180|gb|ELR99789.1| transcription-repair coupling factor Mfd [Gloeocapsa sp. PCC 73106]
Length = 1146
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 298/652 (45%), Positives = 421/652 (64%), Gaps = 26/652 (3%)
Query: 144 GFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQ 203
S +VD L GDYVVHK GIGKF Q +S EY+ I+YADG+ ++P
Sbjct: 475 ALSKQVDINKLTPGDYVVHKTHGIGKFT------QLESLATREYLVIQYADGLLRVPADS 528
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
+L RY K P L ++S + AWE K K + ++K+ VDL++LY R +
Sbjct: 529 LD-VLSRYR--QIGKNPPELHRMS-SKAWENTKNKVRKTVKKLAVDLLKLYALRTQATGY 584
Query: 264 PYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
YP++ P +E FPY+ TPDQ KA DV+RDL E + PMDRLICGDVGFGKTEVA+R
Sbjct: 585 AYPQDQPWQSELEDSFPYQVTPDQLKAIQDVKRDL-ESDRPMDRLICGDVGFGKTEVAIR 643
Query: 323 AIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
AIF VV+ + KQ LAPT +L +QH+ + ERF+ YP I +GLL+RF++ E++E L+
Sbjct: 644 AIFKVVAGSNKQVAFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTALERKEILER 702
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+ G ++++VGT LL + + + NLGLLV+DEEQRFGV QKEKI K +DVLTLSATP
Sbjct: 703 LATGEIDVVVGTQQLLSNGIKFRNLGLLVIDEEQRFGVNQKEKIKEIKTQLDVLTLSATP 762
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTLY++++G R+ SLI+TPPP R PIKTHLS ++ E V +AI+ ELDRGGQ+FYV+PR
Sbjct: 763 IPRTLYMSISGVREMSLITTPPPSRRPIKTHLSPYNLEVVRNAIRNELDRGGQIFYVVPR 822
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
++G+EE ++ PGV IAIAHGQ +LE TM F G IL+CT I+ESGLDI
Sbjct: 823 VEGIEEVAAGIRTMVPGVRIAIAHGQMVEAELESTMLGFNNGDADILLCTTIIESGLDIP 882
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NTI+V+D +FGL+QLYQLRGRVGR+ +AHA+L YP ++ L++ A +RL AL+E +
Sbjct: 883 RVNTIVVEDAHRFGLSQLYQLRGRVGRSGVQAHAWLLYP-QTKLTEAARQRLRALQEFTQ 941
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS 681
LG G+QLA +D+ IRG G + G +Q+G + +G DL+ EML E++ ++ + V +
Sbjct: 942 LGSGYQLAMRDLEIRGVGNLLGAEQSGQMAAIGFDLYVEMLQEAIKEIQGQEIPQV--EE 999
Query: 682 VQIDININPRLPSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
QID+ +P++YI LE ME + A +AE L Q +YG P
Sbjct: 1000 TQIDLAFTAFIPTDYIPDLEQKMEAYRSLATANSSAE-----LTQIALGWNDRYGPLPPP 1054
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEV 789
++ LL+ L ++++ +G +I K V ++T M + +K++ D++ +
Sbjct: 1055 VQQLLQVLELKQLGKSLGFARIKTEAKQNVVLETPMEEPAWKLLADNLPQHI 1106
>gi|282900454|ref|ZP_06308403.1| Transcription-repair coupling factor [Cylindrospermopsis raciborskii
CS-505]
gi|281194647|gb|EFA69595.1| Transcription-repair coupling factor [Cylindrospermopsis raciborskii
CS-505]
Length = 1171
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 304/683 (44%), Positives = 432/683 (63%), Gaps = 17/683 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP LR+GD+VVH+ GIGKFV ++ D T +Y+ I+YADG+ ++ Q
Sbjct: 500 SKQVDPNKLRAGDFVVHRSHGIGKFVKLESLTINDETR--DYLVIQYADGVLRVAADQVG 557
Query: 206 RM-LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ +R NL RP L K++ + AW+ K+K K AI+K+ VDL++LY R +Q+
Sbjct: 558 SLSRFRTNL----DRPPQLHKMT-SKAWDNTKSKVKKAIKKLAVDLLQLYAARSQQEGFS 612
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
YP++ P E FPY+PT DQ KA DV+RD+ E PMDRL+CGDVGFGKTEVA+RA
Sbjct: 613 YPQDMPWQEEMEDSFPYQPTTDQLKAVQDVKRDM-ESPRPMDRLVCGDVGFGKTEVAIRA 671
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF V+AGKQ +LAPT +L +QH+ + ERF+ YP I VGLL+RF+S EK +
Sbjct: 672 IFKAVTAGKQVALLAPTTILTQQHYHTIKERFAPYP-IHVGLLNRFRSHEEKRNIQKRLL 730
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+I+VGTH LLG V + +LGLLV+DEEQRFGV QKEKI + K +DVLTLSATPIP
Sbjct: 731 TGELDIVVGTHQLLGKGVQFKDLGLLVIDEEQRFGVNQKEKIKTLKTHLDVLTLSATPIP 790
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PI+THL+ + + V SAI+ ELDRGGQVFYV+PR++
Sbjct: 791 RTLYMSLSGIREMSLITTPPPTRRPIQTHLAPLNPQIVSSAIRQELDRGGQVFYVVPRVE 850
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE L++ P IAHGQ QLE TM F+ IL+CT I+ESGLDI
Sbjct: 851 GIEETTTRLREMIPSGRFVIAHGQMDESQLESTMLTFSNHEADILVCTTIIESGLDIPRV 910
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D +FGL+QLYQLRGRVGRA +AHA+LFYP + LSD A +RL A++E +LG
Sbjct: 911 NTILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLG 970
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V Q
Sbjct: 971 SGYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPKV--DDTQ 1028
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+N+ +P+ YI ++ M A ++ L +YG P +L
Sbjct: 1029 IDLNLTAFIPATYITDIDQKMSAYRAVATAKSKE--ELRAIAAEWNDRYGIVPPPANQML 1086
Query: 744 KKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 802
+ + ++++A ++G ++I K + ++T M + + ++ +T E +N + ++
Sbjct: 1087 RVMELKQLAKNLGFSRIKPENKQHIVLETPMEEPAWNLLAQRLT-ENMKNRFVYSPGKVT 1145
Query: 803 AELLLELPREQLLNWIFQCLAEL 825
A L EQ L + ++
Sbjct: 1146 ARGLAIFKAEQQLETLIDVFGKM 1168
>gi|427702001|ref|YP_007045223.1| transcription-repair coupling factor Mfd [Cyanobium gracile PCC 6307]
gi|427345169|gb|AFY27882.1| transcription-repair coupling factor Mfd [Cyanobium gracile PCC 6307]
Length = 1196
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 292/670 (43%), Positives = 431/670 (64%), Gaps = 28/670 (4%)
Query: 141 GAGGF--------SYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIE 191
AGG+ S VDP + GD+VVH+ GIG+F+ + K + ++ +Y+ ++
Sbjct: 482 AAGGYVRRRRKAASRTVDPNKMLPGDFVVHRNHGIGRFLKLEKLAIGGEAR---DYLVVQ 538
Query: 192 YADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLM 251
YADG+ ++ Q L RY +++ P L+++ T AW + K + + A+ K+ +DL+
Sbjct: 539 YADGLLRVAADQLGS-LGRYRASSDS--PPELNRMGGT-AWTKAKERARKAVAKVAMDLV 594
Query: 252 ELYLHRLKQKRPPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLI 308
+LY R K P + P P E FPY+PTPDQ KA +DV+RD+ ER+ PMDRL+
Sbjct: 595 KLYAER--HKAPGFAFPPDGPWQGELEDSFPYDPTPDQLKAIVDVKRDM-ERDQPMDRLV 651
Query: 309 CGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR 368
CGDVGFGKTEVA+RAIF V+AGKQ +LAPT VLA+QH+ +SERF+ YP +KV LL+R
Sbjct: 652 CGDVGFGKTEVAIRAIFKAVTAGKQCALLAPTTVLAQQHWRTLSERFAPYP-LKVALLNR 710
Query: 369 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF 428
F++ AE++ LD + G+ +++VGTH LLG + LGLLVVDEEQRFGV QKEKI +
Sbjct: 711 FRTAAERKTILDDLAKGNTDVVVGTHQLLGKGTAFRQLGLLVVDEEQRFGVNQKEKIKAL 770
Query: 429 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYE 488
+ VDVLTLSATPIPRTLY++L+G R+ SLI+TPPP R PIKTHL++ +E V SAI+ E
Sbjct: 771 RKDVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLASLDEEAVRSAIRQE 830
Query: 489 LDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKIL 548
LDRGGQVFYV+PR++G+EE L+ PG+ + +AHGQ +LE M F G ++
Sbjct: 831 LDRGGQVFYVVPRVEGIEEVAGQLRAMLPGLRLQVAHGQMPEGELESAMVAFNAGEADVM 890
Query: 549 ICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQ 608
+CT I+ESGLDI NTI+V+D +FGLAQLYQLRGRVGR+ +AHA+LFYP + LS+
Sbjct: 891 LCTTIIESGLDIPRVNTILVEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGDASLSEA 950
Query: 609 ALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK 668
A +RL A++E +LG G+QLA +DM IRG G + G +Q+G + +G DL+ EML + L++
Sbjct: 951 ARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQDCLAE 1010
Query: 669 VDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESL 728
+ + +V QID+ + +P+++I + M A + + L++
Sbjct: 1011 IQGQDIPAV--DETQIDLPVTAFIPADWITEADEKMAAYRAAAECGGKA--ALVELAAGW 1066
Query: 729 RRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSE 788
+YG P ++ LL+ + ++ +A G ++I + ++T M + F+ + ++
Sbjct: 1067 ADRYGPIPAPVQSLLELMELKLLARRCGFSRIKPEKPNIALETPMEEPAFRRLRQALPQH 1126
Query: 789 VHRNSLTFEG 798
+H L ++G
Sbjct: 1127 LH-GRLVYQG 1135
>gi|56750236|ref|YP_170937.1| transcription-repair coupling factor [Synechococcus elongatus PCC
6301]
gi|56685195|dbj|BAD78417.1| transcription-repair coupling factor [Synechococcus elongatus PCC
6301]
Length = 1153
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 293/647 (45%), Positives = 417/647 (64%), Gaps = 14/647 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VD L+ GDYVVH+ GIG+FV K + S EY+ ++YADG+ ++ Q
Sbjct: 474 SKQVDRDRLKPGDYVVHRSHGIGRFV--KLESLSLSGEMREYLVLQYADGLLRVAADQMG 531
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
+ + E RP LS ++ + AWE+ K K + A++K+ VDL++LY R +Q+ Y
Sbjct: 532 SLSRYRGMGGE--RPE-LSSMT-SKAWEKTKAKARKAVRKVAVDLLKLYAQRSQQEGHAY 587
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PT DQ KA V+RD+ E PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 588 PPDQPWQQELEESFPYQPTADQLKAVEAVKRDM-ESPQPMDRLVCGDVGFGKTEVAVRAI 646
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+AGKQ +LAPT +L +QH+ + ERF+ YP I++GLL+RF++ +E++ +
Sbjct: 647 FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYP-IQIGLLNRFRTASERQNIQQRLAT 705
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+++VGT LL + +LGLLVVDEEQRFGV QKEKI + K VDVLTLSATPIPR
Sbjct: 706 GELDVVVGTQQLLSKGTQFRDLGLLVVDEEQRFGVNQKEKIKALKTQVDVLTLSATPIPR 765
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY+AL+G R+ SLI+TPPP R PIKTHL + E V +AI E+DRGGQVFYV+PR++G
Sbjct: 766 TLYMALSGVREMSLITTPPPSRRPIKTHLMPYDLEAVRTAISQEIDRGGQVFYVVPRVEG 825
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E LQ+ P + IA+AHGQ +LE TM F ++ICT I+ESGLDI N
Sbjct: 826 IEAIATRLQEMLPSLRIAVAHGQMPEGELEATMLAFNNNEADVMICTTIIESGLDIPRVN 885
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D Q+FGL+QLYQLRGRVGRA +AHA+LFYP +++LSDQA +RL A++E +LG
Sbjct: 886 TILIEDAQRFGLSQLYQLRGRVGRAGIQAHAWLFYPGETVLSDQARQRLRAIQEFTQLGS 945
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +D+ IRG G + G +Q+G + +G DL+ EML ESL ++ + V QI
Sbjct: 946 GYQLAMRDLEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLQEIRGQDIPQV--DDTQI 1003
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+++ +P++YI ++ M A+ Q L+Q +YG P S + LL+
Sbjct: 1004 DLSLTAFIPADYIPDIDAKMSAYRAV--ASAQTPADLLQIAADWSDRYGSLPASAQQLLR 1061
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVH 790
+ ++++A +G + K V ++T M +K + + + S +
Sbjct: 1062 VMELKQVAKSLGFARTRTESKQHVILETPMEAPAWKRLHEKLPSNLQ 1108
>gi|170077902|ref|YP_001734540.1| transcription-repair coupling factor [Synechococcus sp. PCC 7002]
gi|169885571|gb|ACA99284.1| Transcription-repair coupling factor (TRCF) [Synechococcus sp. PCC
7002]
Length = 1162
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 301/690 (43%), Positives = 435/690 (63%), Gaps = 26/690 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S VD L GDY+VHK GIG+F+ I ++ EY+ ++YADG+ ++P
Sbjct: 488 SKTVDVNKLNPGDYIVHKSHGIGRFIKI------ETLQSREYLVLKYADGILRIPADSLD 541
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L RY RP L ++ T WE+ K K + +++K+ VDL+++Y R + K Y
Sbjct: 542 -TLSRYR-HTAKGRPE-LHRMGGKT-WEKTKAKVRKSVKKLAVDLLKIYAQRAEMKGITY 597
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+ TPDQ KA D++RDL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 598 PSDAPWQQEMEDSFPYQATPDQLKAVQDIKRDL-ESDRPMDRLVCGDVGFGKTEVAIRAI 656
Query: 325 FCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F VV+ G KQ +LAPT +L +QH+ + ERFS YP I +GLL+RF++ +E+++ L+ +
Sbjct: 657 FKVVTGGHKQVALLAPTTILTQQHYHTLKERFSPYP-INIGLLNRFRTASERKDILERLH 715
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+I+VGT LLG V + +LGLLVVDEEQRFGV QKEKI + K VDVLTLSATPIP
Sbjct: 716 KGELDIVVGTQQLLGKDVQFKDLGLLVVDEEQRFGVNQKEKIKALKTKVDVLTLSATPIP 775
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PI+TH+S + E + +AI+ ELDRGGQ+FYV+PR++
Sbjct: 776 RTLYMSLSGIREMSLITTPPPSRRPIQTHVSRHNPEIIRTAIRNELDRGGQIFYVVPRVE 835
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+E LQ+ P +AIAHGQ LE TM F G IL+CT IVESGLDI
Sbjct: 836 GIETIATQLQEMIPSARVAIAHGQMNEADLETTMLTFNNGEADILLCTTIVESGLDIPRV 895
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTIIV+D Q+FGL+QLYQLRGRVGR+ +AHA+L YP K L+++A +RL AL+E +LG
Sbjct: 896 NTIIVEDAQKFGLSQLYQLRGRVGRSGIQAHAWLLYPSKGELTEKARKRLRALQEFSQLG 955
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G DL+ EML + +S++ + V Q
Sbjct: 956 SGYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLQDCISEIRGQEIPQV--DDCQ 1013
Query: 684 IDININPRLPSEYINHLENPME---MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
+D+ + +PS YI + ++ ++ +A E LMQ +YGK P S+E
Sbjct: 1014 VDLRLTAFIPSNYITDGDQKLDAYRLITQANSKLE-----LMQIAADWGDRYGKLPPSVE 1068
Query: 741 ILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGD 799
LL+ + ++ +A +G +I GK + ++T M + ++ + + S + ++ +
Sbjct: 1069 QLLQVIELKMIAKSLGFARIKPEGKQNIVLETPMEEPAWQRFAEKLPSHL-QSRFVYTSK 1127
Query: 800 QIKAELLLELPREQLLNWIFQCLAELYASL 829
++ L + +Q L+ + + L + L
Sbjct: 1128 KVTVRGLGAMKPQQQLDSLIEWLGRMQGVL 1157
>gi|116074923|ref|ZP_01472184.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9916]
gi|116068145|gb|EAU73898.1| Transcriptional-repair coupling factor [Synechococcus sp. RS9916]
Length = 1194
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 297/693 (42%), Positives = 438/693 (63%), Gaps = 21/693 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S VDP ++ GD+VVH+ GIG+F K + S +Y+ ++YADG+ ++ Q
Sbjct: 493 SRTVDPNKMQPGDFVVHRNHGIGRFQ--KLEKLAISGEVRDYLVVQYADGILRVAADQLG 550
Query: 206 RM-LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ YR N + P LSK+ + AW + K + A++K+ +DL++LY R +
Sbjct: 551 SLGRYRAN----SDSPPQLSKMGGS-AWVKAKERASKAVRKVALDLVKLYAERHQAPGFA 605
Query: 265 YP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+P P E FPYEPTPDQ KA +V+RD+ E+ PMDRL+CGDVGFGKTEVA+RA
Sbjct: 606 FPIDGPWQTELEDSFPYEPTPDQLKATAEVKRDM-EKSQPMDRLVCGDVGFGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF ++AGKQ +LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ E++ L+ +K
Sbjct: 665 IFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTAGERKTILEGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++ +VGTH LL ++ LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIP
Sbjct: 724 KGTIDAVVGTHQLLSKSTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHL+A +E V SAI+ ELDRGGQVFYV+PR++
Sbjct: 784 RTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDEEAVRSAIRQELDRGGQVFYVVPRVQ 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE L++ PG+ + +AHGQ +LE M F G +++CT IVESGLDI
Sbjct: 844 GIEEVAGKLREMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGLDIPRV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D +FGLAQLYQLRGRVGR+ +AHA+LFYP + LSD A +RL A++E +LG
Sbjct: 904 NTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGDASLSDAARQRLRAIQEFAQLG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G DL+ EML ESL+++ + +V Q
Sbjct: 964 SGYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPAV--DDTQ 1021
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+ + +P+++I + M A + Q L++ ++G P ++ LL
Sbjct: 1022 VDLQVTAFIPADWITDADEKMGAYRSAGEC--QSAEALVELAADWADRFGALPGPVQSLL 1079
Query: 744 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGD---- 799
+ + ++ +A G +I + ++T M + F+++ + +H L ++G
Sbjct: 1080 QLMELKLLAKRCGFARIRPEKPNIALETPMEEPAFRLLRQGLPQHLH-GRLVYQGGSGST 1138
Query: 800 -QIKAELLLELPREQLLNWIFQCLAELYASLPA 831
++ A L LP ++ L + L+++ A +P
Sbjct: 1139 AKVLARGLGVLPMDKQLEELKTWLSQMAAQIPG 1171
>gi|254430155|ref|ZP_05043858.1| transcription-repair coupling factor [Cyanobium sp. PCC 7001]
gi|197624608|gb|EDY37167.1| transcription-repair coupling factor [Cyanobium sp. PCC 7001]
Length = 1189
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 294/685 (42%), Positives = 436/685 (63%), Gaps = 23/685 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S VDP ++ GD+VVH+ GIG+F+ + K + + +Y+ ++YADG+ ++ Q
Sbjct: 488 SRTVDPNKMQPGDFVVHRNHGIGRFLRLEKLAIGGEER---DYLVVQYADGLLRVAADQL 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
L RY +++ P L+++ T AW + K + + A++++ +DL++LY R K P
Sbjct: 545 GS-LGRYRATSDS--PPDLNRMGGT-AWSKAKERARKAVRRVALDLVKLYAERHKTPGFP 600
Query: 265 YPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+P + E FPYEPTPDQ KA DV+RD+ E+ PMDRL+CGDVGFGKTEVA+RA
Sbjct: 601 FPPDGPWQNELEDSFPYEPTPDQVKAIADVKRDM-EQAQPMDRLVCGDVGFGKTEVAIRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF V+AG+Q +LAPT VLA+QH+ +SERF+ YP +KV LL+RF++ AE++ + +
Sbjct: 660 IFKAVTAGRQVAMLAPTTVLAQQHWRSLSERFAPYP-VKVSLLNRFRTAAERKLIQEGLA 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++++VGTH LLG + LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIP
Sbjct: 719 AGTVDVVVGTHQLLGKGTRFKQLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHL+A +E V SAI+ ELDRGGQ+FYV+PR++
Sbjct: 779 RTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDEEAVRSAIRQELDRGGQIFYVVPRVE 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE + L+Q PG+ + +AHGQ +LE M F G +++CT IVESGLDI
Sbjct: 839 GIEEVAERLRQMLPGLQLLVAHGQMAEGELESAMVAFNAGEADLMLCTTIVESGLDIPRV 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D +FGLAQLYQLRGRVGR+ +AHA+LFYP + LS+ A +RL A++E +LG
Sbjct: 899 NTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGDASLSEAARQRLRAIQEFAQLG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G DL+ EML ESL+++ + V Q
Sbjct: 959 SGYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPKV--DDTQ 1016
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ I +P ++I + M A ++ L++ + +YG P + LL
Sbjct: 1017 IDLPITAFIPGDWITENDEKMAAYRAAADCTSKE--ALVELAAAWVDRYGAIPAPVTALL 1074
Query: 744 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
+ + ++ +A G ++I + + T M + F+++ + +H + G A
Sbjct: 1075 QLMELKLVARRCGFSRIKPEKPNIALDTPMEEPAFRLLRQGLPQHLHGRLVYQAGSGSTA 1134
Query: 804 ELL--------LELPREQLLNWIFQ 820
++L +E E+L+ W+ Q
Sbjct: 1135 KVLARGLGVLPVERQLEELMGWLNQ 1159
>gi|88808865|ref|ZP_01124374.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 7805]
gi|88786807|gb|EAR17965.1| Transcriptional-repair coupling factor [Synechococcus sp. WH 7805]
Length = 1180
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 297/691 (42%), Positives = 438/691 (63%), Gaps = 19/691 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S VDP +R GD+VVH+ GIG+F K + S +Y+ ++YADG+ ++ Q
Sbjct: 479 SRTVDPNKMRPGDFVVHRNHGIGRFQ--KLEKLAISGEVRDYLVVQYADGILRVAADQLG 536
Query: 206 RM-LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ YR N + P LSK+ +AW + K + A++K+ +DL++LY R +
Sbjct: 537 SLGRYRAN----SDAPPQLSKMG-GSAWVKAKERASKALRKVALDLVKLYAERHQAPGFA 591
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+P + P E FPYEPTPDQ KA +V+RD+ E+ PMDRL+CGDVGFGKTEVA+RA
Sbjct: 592 FPVDGPWQTELEESFPYEPTPDQLKATAEVKRDM-EKSQPMDRLVCGDVGFGKTEVAIRA 650
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF ++AG+Q +LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ E++ L+ +K
Sbjct: 651 IFKAITAGRQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTAGERKSILEGLK 709
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++ +VGTH LL ++ LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIP
Sbjct: 710 KGTIDAVVGTHQLLSKSTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIP 769
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHL+A +E + SAI+ ELDRGGQVFYV+PR++
Sbjct: 770 RTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDEEAIRSAIRQELDRGGQVFYVVPRVE 829
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+E+ L+Q PG+ + +AHGQ +LE M F G +++CT IVESGLDI
Sbjct: 830 GIEDVAGQLRQMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGLDIPRV 889
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D +FGLAQLYQLRGRVGR+ +AHA+LFYP + LS+ A +RL A++E +LG
Sbjct: 890 NTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSEAARQRLRAIQEFAQLG 949
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G DL+ EML ESL+++ + SV Q
Sbjct: 950 SGYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPSV--DDTQ 1007
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+ + +P+++I + M A + D L++ +YG P ++ LL
Sbjct: 1008 VDLQVTAFIPADWITDADEKMAAYRAAAECLSSD--ELVELAALWADRYGALPGPVQSLL 1065
Query: 744 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
+ + ++ +A G ++I + ++T M + F+++ + +H + G A
Sbjct: 1066 QLMNLKLLAKRCGFSRIRPEKPNIVLETPMEEPAFRLLRQGLPQHLHGRLVYQAGPGAAA 1125
Query: 804 ELLLE----LPREQLLNWIFQCLAELYASLP 830
++L LP E+ L+ + L ++ A +P
Sbjct: 1126 KVLARGLGVLPMEKQLDELKGWLEQMAAQIP 1156
>gi|209525598|ref|ZP_03274136.1| transcription-repair coupling factor [Arthrospira maxima CS-328]
gi|423065217|ref|ZP_17054007.1| transcription-repair coupling factor [Arthrospira platensis C1]
gi|209493931|gb|EDZ94248.1| transcription-repair coupling factor [Arthrospira maxima CS-328]
gi|406713349|gb|EKD08520.1| transcription-repair coupling factor [Arthrospira platensis C1]
Length = 1167
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 304/687 (44%), Positives = 443/687 (64%), Gaps = 26/687 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S +VDP L+ GDYVVH++ GIGKFV ++ + ++ +Y+ ++YADG ++ Q
Sbjct: 488 SKQVDPNRLQPGDYVVHRQHGIGKFVKLESLTINQEIR---DYLVLQYADGTLRVAADQV 544
Query: 205 SRM--LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
+ L R +E+K P+ L+KL+ AWE+ + K +I+K+ VDL++LY R ++
Sbjct: 545 GTLSRLRR----SESKVPQ-LNKLTGK-AWEKSREKVGKSIKKLAVDLLKLYAERSQKTG 598
Query: 263 PPYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
YP++ P E FPY+PTPDQ K DV+RD+ E + PMDRL+CGDVGFGKTEVA+
Sbjct: 599 FSYPQDTPWQQEMEDSFPYQPTPDQLKCSQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAI 657
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RAIF V+AGKQ LAPT +L +QH+ + ERF+ YP I++GLL+RF+S +EK+
Sbjct: 658 RAIFKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYP-IEIGLLNRFRSASEKKLIQQK 716
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+ G ++IIVGTHS+L + + +LGLLVVDEEQRFGV QKEKI + K VDVLTL+ATP
Sbjct: 717 LTTGEIDIIVGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKALKTHVDVLTLTATP 776
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTLY+AL+G R+ SLI+TPPP R PI+THL ++E + +AI ELDRGGQVFYV+PR
Sbjct: 777 IPRTLYMALSGIREMSLITTPPPSRRPIQTHLGPLNQETIRAAICQELDRGGQVFYVVPR 836
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
I+G+EE +++ P +AIAHGQ + +LE M F+ G IL+CT I+ESGLDI
Sbjct: 837 IEGIEEKSAAIREMVPSARLAIAHGQMEAGELESIMLTFSAGEADILVCTTIIESGLDIP 896
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK----SLLSDQALERLAALE 617
NTI+V+D +FGL QLYQLRGRVGRA +AHA+LFYP K + L++ A++RL A++
Sbjct: 897 RVNTILVEDAHKFGLGQLYQLRGRVGRAGVQAHAWLFYPVKGDGQAALTEDAVKRLRAIK 956
Query: 618 ECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV 677
E +LG G+QLA +D+ IRG G I G QQ+G + +G DL+ EML E++ +V + V
Sbjct: 957 EFTQLGSGYQLAMRDLEIRGAGDILGAQQSGQMNAIGFDLYTEMLQEAIQEVRGQEIPQV 1016
Query: 678 PYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPY 737
Q+D+ + +PS+YI L+ M A+ QD L + E +YGK P
Sbjct: 1017 --DDTQVDLILTAFIPSDYITDLDQKMSAYRAV--ASCQDSEELSRIEEDWSDRYGKIPA 1072
Query: 738 SMEILLKKLYVRRMAADIGITKIYA--SGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLT 795
+ LL+ + ++++A +G +I S + + ++T M + + ++ ++ + +
Sbjct: 1073 PAQQLLRVMELKQIAKKLGFARIRPDDSKQNIVLETPMEEPAWNLLKQNLPEHL-QPRFI 1131
Query: 796 FEGDQIKAELLLELPREQLLNWIFQCL 822
+ Q+K L LP + L+ + Q L
Sbjct: 1132 YGRKQVKIRGLGALPPSKQLDCLIQWL 1158
>gi|148239816|ref|YP_001225203.1| transcription-repair coupling factor [Synechococcus sp. WH 7803]
gi|147848355|emb|CAK23906.1| Transcription-repair coupling factor [Synechococcus sp. WH 7803]
Length = 1180
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 295/693 (42%), Positives = 440/693 (63%), Gaps = 19/693 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S VDP +R GD+VVH+ GIG+F K + S +Y+ ++YADG+ ++ Q
Sbjct: 479 SRTVDPNKMRPGDFVVHRNHGIGRFQ--KLEKLAISGEVRDYLVVQYADGILRVAADQLG 536
Query: 206 RM-LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ YR N + P LSK+ + AW + K + A++K+ +DL++LY R +
Sbjct: 537 SLGRYRAN----SDAPPQLSKMGGS-AWVKAKERASKALRKVALDLVKLYAERHQAPGFA 591
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+P + P +E FPYEPTPDQ KA +V++D+ E+ PMDRL+CGDVGFGKTEVA+RA
Sbjct: 592 FPVDGPWQSELEESFPYEPTPDQLKATAEVKKDM-EKSQPMDRLVCGDVGFGKTEVAIRA 650
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF ++AG+Q +LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ E++ L+ +K
Sbjct: 651 IFKAITAGRQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTAGERKSILEGLK 709
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++ +VGTH LL ++ LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIP
Sbjct: 710 KGTIDAVVGTHQLLSKSTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIP 769
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHL+A +E + SAI+ ELDRGGQVFYV+PR++
Sbjct: 770 RTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDEEAIRSAIRQELDRGGQVFYVVPRVE 829
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+E+ L+Q PG+ + +AHGQ +LE M F G +++CT IVESGLDI
Sbjct: 830 GIEDVAAQLRQMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGLDIPRV 889
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D +FGLAQLYQLRGRVGR+ +AHA+LFYP + LS+ A +RL A++E +LG
Sbjct: 890 NTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSEAARQRLRAIQEFAQLG 949
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G DL+ EML ESL+++ + SV Q
Sbjct: 950 SGYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPSV--DDTQ 1007
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+ + +P+++I + M A + D L++ +YG P ++ LL
Sbjct: 1008 VDLQVTAFIPADWITDADEKMAAYRAAAECLSGD--ELVELAALWADRYGALPGPVQSLL 1065
Query: 744 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
+ + ++ +A G ++I + ++T M + F+++ + +H + G A
Sbjct: 1066 QLMNLKLLAKRCGFSRIRPEKPNIALETPMEEPAFRLLRQGLPQHLHGRLVYQTGTGASA 1125
Query: 804 ELLLE----LPREQLLNWIFQCLAELYASLPAL 832
++L LP ++ L+ + L ++ A +P +
Sbjct: 1126 KVLARGLGVLPMDKQLDELKGWLEQMAAQIPGV 1158
>gi|376005461|ref|ZP_09782964.1| Transcription-repair-coupling factor [Arthrospira sp. PCC 8005]
gi|375326175|emb|CCE18717.1| Transcription-repair-coupling factor [Arthrospira sp. PCC 8005]
Length = 1167
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 304/687 (44%), Positives = 442/687 (64%), Gaps = 26/687 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S +VDP L+ GDYVVH++ GIGKFV ++ + ++ +Y+ ++YADG ++ Q
Sbjct: 488 SKQVDPNRLQPGDYVVHRQHGIGKFVKLESLTINQEIR---DYLVLQYADGTLRVAADQV 544
Query: 205 SRM--LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
+ L R +E+K P+ L+KL+ AWE+ + K +I+K+ VDL++LY R ++
Sbjct: 545 GTLSRLRR----SESKVPQ-LNKLTGK-AWEKSREKVGKSIKKLAVDLLKLYAERSQKTG 598
Query: 263 PPYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
YP + P E FPY+PTPDQ K DV+RD+ E + PMDRL+CGDVGFGKTEVA+
Sbjct: 599 FSYPDDTPWQQEMEDSFPYQPTPDQLKCSQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAI 657
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RAIF V+AGKQ LAPT +L +QH+ + ERF+ YP I++GLL+RF+S +EK+
Sbjct: 658 RAIFKAVTAGKQVAFLAPTTILTQQHYHTLKERFAPYP-IEIGLLNRFRSASEKKLIQQK 716
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+ G ++IIVGTHS+L + + +LGLLVVDEEQRFGV QKEKI + K VDVLTL+ATP
Sbjct: 717 LTTGEIDIIVGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKALKTHVDVLTLTATP 776
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTLY+AL+G R+ SLI+TPPP R PI+THL ++E + +AI ELDRGGQVFYV+PR
Sbjct: 777 IPRTLYMALSGIREMSLITTPPPSRRPIQTHLGPLNQETIRAAICQELDRGGQVFYVVPR 836
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
I+G+EE +++ P +AIAHGQ + +LE M F+ G IL+CT I+ESGLDI
Sbjct: 837 IEGIEEKSAAIREMVPSARLAIAHGQMEAGELESIMLTFSAGEADILVCTTIIESGLDIP 896
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK----SLLSDQALERLAALE 617
NTI+V+D +FGL QLYQLRGRVGRA +AHA+LFYP K + L++ A++RL A++
Sbjct: 897 RVNTILVEDAHKFGLGQLYQLRGRVGRAGVQAHAWLFYPVKGDGQAALTEDAVKRLRAIK 956
Query: 618 ECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV 677
E +LG G+QLA +D+ IRG G I G QQ+G + +G DL+ EML E++ +V + V
Sbjct: 957 EFTQLGSGYQLAMRDLEIRGAGDILGAQQSGQMNAIGFDLYTEMLQEAIQEVRGQEIPQV 1016
Query: 678 PYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPY 737
Q+D+ + +PS+YI L+ M A+ QD L + E +YGK P
Sbjct: 1017 --DDTQVDLILTAFIPSDYITDLDQKMSAYRAV--ASCQDSEELSRIEEDWSDRYGKIPA 1072
Query: 738 SMEILLKKLYVRRMAADIGITKIYA--SGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLT 795
+ LL+ + ++++A +G +I S + + ++T M + + ++ ++ + +
Sbjct: 1073 PAQQLLRVMELKQIAKKLGFARIRPDDSKQNIVLETPMEEPAWNLLKQNLPEHL-QPRFI 1131
Query: 796 FEGDQIKAELLLELPREQLLNWIFQCL 822
+ Q+K L LP + L+ + Q L
Sbjct: 1132 YGRKQVKIRGLGALPPSKQLDCLIQWL 1158
>gi|300868792|ref|ZP_07113400.1| Transcription-repair-coupling factor [Oscillatoria sp. PCC 6506]
gi|300333202|emb|CBN58592.1| Transcription-repair-coupling factor [Oscillatoria sp. PCC 6506]
Length = 1226
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 288/648 (44%), Positives = 427/648 (65%), Gaps = 16/648 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S +VDP L + DYVVH++ GIG+F+ ++ + +++ EY+ I+Y DG ++ Q
Sbjct: 549 SKQVDPNKLSANDYVVHRQHGIGRFLRLESLTINQETR---EYLVIQYGDGTLRIAADQL 605
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
L R+ + R L+KLS T WE+ K K + +I+K+ VDL+ LY R +Q
Sbjct: 606 G-ALSRFRTVGD--RAPELNKLSAQT-WEKTKAKVRKSIKKLAVDLLNLYAKRAQQVGFA 661
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+P + P E FPY+PTPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RA
Sbjct: 662 FPPDMPWQQELEDSFPYQPTPDQLKATQDVKRDM-EGDRPMDRLVCGDVGFGKTEVAIRA 720
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF ++AGKQ +LAPT +L +QH+ + ERF+ YP I+VGLL+RF+++ E+ E +
Sbjct: 721 IFKAITAGKQVAMLAPTTILTQQHYHTLKERFAPYP-IEVGLLNRFRTETERRELQRRLA 779
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+++VGT S+L V + +LGL+VVDEEQRFGVKQKE I + K VDVLTL+ATPIP
Sbjct: 780 SGELDVVVGTQSILSKGVKFKDLGLMVVDEEQRFGVKQKEAIKALKTMVDVLTLTATPIP 839
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ S+I+TPPP R PI+THL+A+ E V +AI+ ELDRGGQVFYV+PRI+
Sbjct: 840 RTLYMSLSGIREMSIIATPPPTRRPIQTHLAAYDPEVVRTAIRQELDRGGQVFYVVPRIE 899
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+++ L PG IAIAHGQ + +LE M F+ IL+CT I+ESGLDI
Sbjct: 900 GIDDLAAQLGVMVPGAKIAIAHGQMDASELEAIMLAFSAADFDILVCTTIIESGLDIPRV 959
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D Q+FGLAQLYQLRGRVGRA +AHA+LFYP+++ L+D+A +RL A++E +LG
Sbjct: 960 NTILIEDAQRFGLAQLYQLRGRVGRAGVQAHAWLFYPNQNRLTDEARQRLRAIQEFAQLG 1019
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +D+ IRG G I G +Q+G + +G DL+ +ML E++ ++ + V + Q
Sbjct: 1020 SGYQLAIRDLEIRGAGDILGAEQSGQMDAIGFDLYAQMLEEAIREIKGQEIPQV--EDTQ 1077
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ + +P++YI L+ M A+ + L Q + +YG P + L+
Sbjct: 1078 IDLTLTAFIPADYITDLDQKMSAYRSVASASTLE--ELSQIEAAWCDRYGPIPKPAQQLI 1135
Query: 744 KKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVH 790
+ + ++++A IG ++I K + ++T M + + ++ ++ +H
Sbjct: 1136 RVVQLKQLAMKIGFSRIKPENKQHIVLETPMEEPGWNLLKANLPDHLH 1183
>gi|428218607|ref|YP_007103072.1| transcription-repair coupling factor [Pseudanabaena sp. PCC 7367]
gi|427990389|gb|AFY70644.1| transcription-repair coupling factor [Pseudanabaena sp. PCC 7367]
Length = 1179
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 298/685 (43%), Positives = 435/685 (63%), Gaps = 15/685 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VD L GDY+VHK GIGKF+ ++ T EY+ I+Y DG+ ++ Q
Sbjct: 498 SKQVDINKLSPGDYIVHKHHGIGKFLRLESLTINHETR--EYLVIKYEDGLLRVAADQVG 555
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ +E PR L+K++ AW K K + AI+K+ +DL++LY R +Q +
Sbjct: 556 -TLSRFRRTSEGA-PR-LNKMTGK-AWANTKNKVRKAIKKIAIDLLKLYAQRAQQMGFAF 611
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PTPDQ KA DV++D+ E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 612 PVDMPWQEELEDSFPYQPTPDQLKAIQDVKQDM-ESDRPMDRLVCGDVGFGKTEVAVRAI 670
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F ++ GKQ+ +LAPT +LA+QH+ ERF+ YP IKV LL+RF++ E++E + +K
Sbjct: 671 FKALTTGKQSALLAPTTILAQQHYHTFQERFAPYP-IKVALLNRFKTANERKEIIQKLKT 729
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G +++++GTH +L V + +LGLLVVDEEQRFGV QKEKI + K VDVLTL+ATPIPR
Sbjct: 730 GEIDLVIGTHQILSKEVKFKDLGLLVVDEEQRFGVAQKEKIKTLKTEVDVLTLTATPIPR 789
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R IKTHLS ++ E V +AI+ ELDRGGQ+FYV+PRI+G
Sbjct: 790 TLYMSLSGVREMSLIATPPPSRRAIKTHLSRYNDETVRTAIRQELDRGGQIFYVVPRIEG 849
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E+ M +++ P +AIAHGQ +LE TM F G +LICT I+ESGLDI N
Sbjct: 850 MEQIMTRIREMIPSARLAIAHGQMPESELESTMLAFNSGEADVLICTTIIESGLDIPRVN 909
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TII++D Q+FGLAQLYQLRGRVGRA +AHA+LFY K L+ A +RL A++E LG
Sbjct: 910 TIIIEDAQKFGLAQLYQLRGRVGRAGVQAHAWLFYQPKGELTPPAYKRLRAIQEFTHLGS 969
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + VG DL+ EML E+++++ +I V Q+
Sbjct: 970 GYQLAMRDMEIRGVGNLLGAEQSGQINVVGFDLYMEMLQEAINEIRGSEIIEV--DDTQV 1027
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+ I +P++Y+ + M AA L E R +YG P + L+K
Sbjct: 1028 DLPITAFIPADYMPDADQKMSAYRAV--AAVNSRRELASILEEWRDRYGNVPQPAQQLIK 1085
Query: 745 KLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
+ ++ +A IG ++I K V ++T + + +K++ + + +H + ++ ++
Sbjct: 1086 VMELKLVAKKIGFSRIRPEHKQHVVLETKLEEPAWKILQQRLPAHLH-SRFVYQPGKVTV 1144
Query: 804 ELLLELPREQLLNWIFQCLAELYAS 828
L +P + L+ + + + A+
Sbjct: 1145 RGLAVMPTAKQLDSLIEWFELMQAT 1169
>gi|33240450|ref|NP_875392.1| transcriptional-repair coupling factor [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
gi|33237978|gb|AAQ00045.1| Transcription-repair coupling factor [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 1170
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 298/690 (43%), Positives = 441/690 (63%), Gaps = 24/690 (3%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRM 207
V+P L+SGDYVVH+ G+GKF+ I KF V +S +Y+ ++Y+DG ++ Q S
Sbjct: 482 VNPNKLKSGDYVVHRNHGVGKFLKIEKFIVNNESR---DYLLVQYSDGTLRVAADQLSS- 537
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK 267
L RY ++ K PR ++KL T W + K + K +I ++ +DL++LY R + +PK
Sbjct: 538 LGRYRNSSD-KSPR-INKLGGNT-WTKAKERAKKSISRVAIDLIKLYAERSNSQGFSFPK 594
Query: 268 N-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
+ P E FPYE TPDQ KA +++ D+ E+ PMDRL+CGDVGFGKTEVA+RA+F
Sbjct: 595 DGPWQRELEEAFPYEATPDQIKAVSEIKSDM-EKSFPMDRLVCGDVGFGKTEVAIRALFK 653
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
++AGKQ +LAPT VLA+QH+ +++RF+ YP IKV LL+RF+S +EK+E +K+G
Sbjct: 654 AITAGKQVAILAPTTVLAQQHWRTLTDRFAPYP-IKVSLLNRFKSSSEKKEIAKSLKNGT 712
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
++ IVGTH LL + Y +LGLLVVDEEQRFGV QKEKI S K ++DVLTL+ATPIPRTL
Sbjct: 713 IDAIVGTHLLLSKNIEYKDLGLLVVDEEQRFGVNQKEKIKSLKKNIDVLTLTATPIPRTL 772
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
Y++L+G R+ SLI+TPPP+R IKTHL + E + SAI E+ RGGQ+FYV+PRI+G+E
Sbjct: 773 YMSLSGVREMSLITTPPPQRRAIKTHLVSKENEIIRSAICQEIGRGGQIFYVVPRIEGIE 832
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
E ++Q P + + IAHGQ +LE M F G +++CT I+ESGLDI NTI
Sbjct: 833 EVATEIKQMVPNIKLIIAHGQMNEGELENAMIAFNAGEADLMLCTTIIESGLDIPRVNTI 892
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
+++D +FGL+QLYQLRGRVGR+ +AHA+LF+P +++ A +RL A++E ELG G+
Sbjct: 893 LIEDAHKFGLSQLYQLRGRVGRSGVQAHAWLFFPQDKEVTNNASQRLKAIQEFSELGSGY 952
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 686
QLA +DM IRG G + G QQ+G + +G DL+ E+L ES++++ + V + ++D+
Sbjct: 953 QLAMRDMEIRGVGNLIGIQQSGQMEIIGFDLYMEILHESIAEIQGQTIPVV--EETKVDL 1010
Query: 687 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLK 744
I +P+ +I E + +A + + D L++ T +YG P +E IL+
Sbjct: 1011 PITAFIPNTWIKSNEEKLTAYKQASECSTID--KLLELTAIWIDRYGVLPAPVEALILIM 1068
Query: 745 KLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAE 804
KL ++ A G ++I + + ++T MN+ F + D + +H + ++ Q +E
Sbjct: 1069 KLKIKSKAC--GFSRIRLNKPNIVLETMMNESTFSSLRDGLEGHLH-GRVIYKAGQSFSE 1125
Query: 805 LLLE----LPREQLLNWIFQCLAELYASLP 830
+ L LP E L I + L + LP
Sbjct: 1126 VTLRGLGILPLESHLETIIEWLENMSNQLP 1155
>gi|291569965|dbj|BAI92237.1| transcriptional-repair coupling factor [Arthrospira platensis
NIES-39]
Length = 1167
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 296/645 (45%), Positives = 422/645 (65%), Gaps = 23/645 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP L+ GDYVVH++ GIGKFV K + S +Y+ ++YADG ++ Q
Sbjct: 488 SKQVDPNRLQPGDYVVHRQHGIGKFV--KLESLTISQEIRDYLVLQYADGTLRVAADQVG 545
Query: 206 RM--LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
+ L R +E+K P+ L+KL+ AWE+ + K + +++K+ VDL++LY R ++
Sbjct: 546 TLSRLRR----SESKVPQ-LNKLTGK-AWEKNREKVRKSVKKLAVDLLKLYAERSQKTGF 599
Query: 264 PYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
YP + P E FPY+PTPDQ K DV+RD+ E + PMDRL+CGDVGFGKTEVA+R
Sbjct: 600 SYPHDTPWQQEMEDSFPYKPTPDQLKCSQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIR 658
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
AIF V+ GKQ LAPT +L +QH+ + ERF+ YP I++GLL+RF+S +EK+ +
Sbjct: 659 AIFKAVTGGKQVAFLAPTTILTQQHYHTLKERFAPYP-IEIGLLNRFRSASEKKLIQQKL 717
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
G ++IIVGTHS+L + + +LGLLVVDEEQRFGV QKEKI + K VDVLTL+ATPI
Sbjct: 718 ITGEIDIIVGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKALKTHVDVLTLTATPI 777
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTLY+AL+G R+ SLI+TPPP R PIKTHL ++E + +AI ELDRGGQVFYV+PRI
Sbjct: 778 PRTLYMALSGIREMSLITTPPPSRRPIKTHLGPLNQETIRAAICQELDRGGQVFYVVPRI 837
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+G+EE +++ P +AIAHGQ + +LE M F+ G IL+CT I+ESGLDI
Sbjct: 838 EGIEEKSAAIREMVPSARLAIAHGQMEAGELESIMLTFSAGEADILVCTTIIESGLDIPR 897
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK----SLLSDQALERLAALEE 618
NTI+V+D +FGL QLYQLRGRVGRA +AHA+LFYP K + L++ A++RL A++E
Sbjct: 898 VNTILVEDAHKFGLGQLYQLRGRVGRAGAQAHAWLFYPIKGDGQAALTEDAVKRLRAIKE 957
Query: 619 CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP 678
+LG G+QLA +D+ IRG G I G QQ+G + +G DL+ EML E++ +V + V
Sbjct: 958 FTQLGSGYQLAMRDLEIRGAGDILGAQQSGQMNAIGFDLYTEMLQEAIQEVRGQEIPQV- 1016
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
Q+D+ + +PS+YI L+ M A+ QD L + E +YG P
Sbjct: 1017 -DDTQVDLILTAFIPSDYITDLDQKMSAYRAV--ASCQDSEELSRIEEDWSDRYGTIPAP 1073
Query: 739 MEILLKKLYVRRMAADIGITKIYA--SGKMVGMKTNMNKKVFKMM 781
+ LL+ + ++++A +G +I S + + ++T M + + ++
Sbjct: 1074 AQQLLRVMELKQIAKKLGFARIKPDDSKQNIILETPMEEPAWNLL 1118
>gi|113954991|ref|YP_730883.1| transcription-repair coupling factor [Synechococcus sp. CC9311]
gi|113882342|gb|ABI47300.1| transcription-repair coupling factor [Synechococcus sp. CC9311]
Length = 1180
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 294/690 (42%), Positives = 436/690 (63%), Gaps = 17/690 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S VDP ++ GD+VVH+ GIG+F K + S +Y+ ++Y+DG+ ++ Q
Sbjct: 479 SRTVDPNKMQQGDFVVHRNHGIGRFK--KLEKLAISGEVRDYLVVQYSDGILRVAADQLG 536
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ ++T P LSK+ + AW + K + A++K+ +DL++LY R + +
Sbjct: 537 S-LGRFRANSDT--PPQLSKMGGS-AWVKAKERATKAVRKVALDLVKLYAERHQAAGFAF 592
Query: 266 P-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P P E FPYEPT DQ KA +DV+RD+ E+ PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 593 PIDGPWQVELEDSFPYEPTSDQLKATVDVKRDM-EKPEPMDRLVCGDVGFGKTEVAIRAI 651
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F ++AGKQ +LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ E++ L+ +K
Sbjct: 652 FKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTAGERKTILEELKT 710
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++ +VGTH LL ++ LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIPR
Sbjct: 711 GTIDAVVGTHQLLSKNTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPR 770
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PIKTHL+A E V S+I+ ELDRGGQVFYV+PR++G
Sbjct: 771 TLYMSLSGVREMSLITTPPPLRRPIKTHLAALDDEAVRSSIRQELDRGGQVFYVVPRVEG 830
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ PG+ + +AHGQ +LE M F G +++CT IVESGLDI N
Sbjct: 831 IEEVAGKLREMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGLDIPRVN 890
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D +FGLAQLYQLRGRVGR+ +AHA+LFYP + LS+ A +RL A++E +LG
Sbjct: 891 TILIEDAHRFGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSEAARQRLRAIQEFAQLGS 950
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML ESL+++ + +V Q+
Sbjct: 951 GYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPAV--DDTQV 1008
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+ + +P+++I + M A + + L++ +YG P ++ LL+
Sbjct: 1009 DLQVTAFIPADWIVDADEKMSAYRAASECLSSE--ALVELAAGWADRYGALPGPVQSLLQ 1066
Query: 745 KLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAE 804
+ ++ +A G +I + +T M + F+++ + +H + G A+
Sbjct: 1067 LMELKLLAKRCGFARIRPEKPNIAFETPMEEPAFRLLRQGLPQHLHGRLVYQAGTGSVAK 1126
Query: 805 LLLE----LPREQLLNWIFQCLAELYASLP 830
+L+ LP E+ L+ + L ++ A +P
Sbjct: 1127 VLVRGLGVLPMERQLDELKGWLEQMAAQIP 1156
>gi|409990943|ref|ZP_11274254.1| transcription-repair coupling factor [Arthrospira platensis str.
Paraca]
gi|409938200|gb|EKN79553.1| transcription-repair coupling factor [Arthrospira platensis str.
Paraca]
Length = 1152
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 296/645 (45%), Positives = 422/645 (65%), Gaps = 23/645 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VDP L+ GDYVVH++ GIGKFV K + S +Y+ ++YADG ++ Q
Sbjct: 473 SKQVDPNRLQPGDYVVHRQHGIGKFV--KLESLTISQEIRDYLVLQYADGTLRVAADQVG 530
Query: 206 RM--LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
+ L R +E+K P+ L+KL+ AWE+ + K + +++K+ VDL++LY R ++
Sbjct: 531 TLSRLRR----SESKVPQ-LNKLTGK-AWEKNREKVRKSVKKLAVDLLKLYAERSQKTGF 584
Query: 264 PYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
YP + P E FPY+PTPDQ K DV+RD+ E + PMDRL+CGDVGFGKTEVA+R
Sbjct: 585 SYPHDTPWQQEMEDSFPYKPTPDQLKCSQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIR 643
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
AIF V+ GKQ LAPT +L +QH+ + ERF+ YP I++GLL+RF+S +EK+ +
Sbjct: 644 AIFKAVTGGKQVAFLAPTTILTQQHYHTLKERFAPYP-IEIGLLNRFRSASEKKLIQQKL 702
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
G ++IIVGTHS+L + + +LGLLVVDEEQRFGV QKEKI + K VDVLTL+ATPI
Sbjct: 703 ITGEIDIIVGTHSVLSKHIKFRDLGLLVVDEEQRFGVNQKEKIKALKTHVDVLTLTATPI 762
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTLY+AL+G R+ SLI+TPPP R PIKTHL ++E + +AI ELDRGGQVFYV+PRI
Sbjct: 763 PRTLYMALSGIREMSLITTPPPSRRPIKTHLGPLNQETIRAAICQELDRGGQVFYVVPRI 822
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+G+EE +++ P +AIAHGQ + +LE M F+ G IL+CT I+ESGLDI
Sbjct: 823 EGIEEKSAAIREMVPSARLAIAHGQMEAGELESIMLTFSAGEADILVCTTIIESGLDIPR 882
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK----SLLSDQALERLAALEE 618
NTI+V+D +FGL QLYQLRGRVGRA +AHA+LFYP K + L++ A++RL A++E
Sbjct: 883 VNTILVEDAHKFGLGQLYQLRGRVGRAGAQAHAWLFYPIKGDGQAALTEDAVKRLRAIKE 942
Query: 619 CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP 678
+LG G+QLA +D+ IRG G I G QQ+G + +G DL+ EML E++ +V + V
Sbjct: 943 FTQLGSGYQLAMRDLEIRGAGDILGAQQSGQMNAIGFDLYTEMLQEAIQEVRGQEIPQV- 1001
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
Q+D+ + +PS+YI L+ M A+ QD L + E +YG P
Sbjct: 1002 -DDTQVDLILTAFIPSDYITDLDQKMSAYRAV--ASCQDSEELSRIEEDWSDRYGTIPAP 1058
Query: 739 MEILLKKLYVRRMAADIGITKIYA--SGKMVGMKTNMNKKVFKMM 781
+ LL+ + ++++A +G +I S + + ++T M + + ++
Sbjct: 1059 AQQLLRVMELKQIAKKLGFARIKPDDSKQNIILETPMEEPAWNLL 1103
>gi|434387013|ref|YP_007097624.1| transcription-repair coupling factor Mfd [Chamaesiphon minutus PCC
6605]
gi|428018003|gb|AFY94097.1| transcription-repair coupling factor Mfd [Chamaesiphon minutus PCC
6605]
Length = 1137
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 294/642 (45%), Positives = 421/642 (65%), Gaps = 17/642 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFD-VQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S +VDP LR GDYVVH+ G+G+F IKF+ +Q D T+ +Y+ I+YADG K+P Q
Sbjct: 458 SKQVDPNKLRPGDYVVHRNHGLGRF--IKFESIQTDDTLR-DYLTIQYADGSLKVPADQV 514
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+L R+ K L++LS AWE+ K K K +I+K+ DL++LY R +++
Sbjct: 515 G-VLSRFRQAAGAKP--ELNRLSGQ-AWEKTKAKVKKSIKKLAFDLLKLYAERSQKEGFA 570
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+P + P E F Y+PTPDQ KA DV+RD+ E + PMDRL+CGDVGFGKTEVA+RA
Sbjct: 571 FPPDAPWQQELEDSFRYQPTPDQLKATQDVKRDM-ESDRPMDRLVCGDVGFGKTEVAIRA 629
Query: 324 IF-CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
IF V +A KQ + LAPT +L +QH+ + ERF+ YP I +GLL+RF++ E+++ L +
Sbjct: 630 IFKAVTTANKQVIFLAPTTILTQQHYHTLKERFAPYP-INIGLLNRFRTAEERKDILQRL 688
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K G L+I++GTH LL + + +LGLL +DEEQRFGV QKEKI + K +DVLTLSATPI
Sbjct: 689 KTGELDIVIGTHQLLSKELKFKDLGLLTIDEEQRFGVNQKEKIKTLKSQIDVLTLSATPI 748
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTLY++L+G R+ SLI+TPPP R PI THLS + + + +AI+ ELDRGGQ+FYV+P+I
Sbjct: 749 PRTLYMSLSGVREMSLITTPPPSRRPIATHLSPYKIDAIATAIRQELDRGGQIFYVVPKI 808
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+G+EE +++ P IAIAHGQ +LE TM F+ G +L+CT I+ESGLDI
Sbjct: 809 EGIEETAGKIREQIPSCRIAIAHGQMDEAELESTMLTFSNGDADLLVCTTIIESGLDIPR 868
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NTI+V+D +FGLAQLYQLRGRVGRA +AHA+LFYP +S LS+ A +RL A++E +L
Sbjct: 869 VNTILVEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKESTLSETARQRLKAIQEFTQL 928
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 682
G G+QLA +DM IRG G + G +Q+G + +G DL+ EML E++ ++ + V
Sbjct: 929 GSGYQLATRDMEIRGVGNLLGAEQSGQMDVIGFDLYMEMLQEAIKEIRGQEIPQV--DDT 986
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
QID+ + +P++YI LE M AA L +YG+ P + L
Sbjct: 987 QIDLKVTAMIPADYIADLEQKMSAYRAV--AAADTKQELTNIAAEWHDRYGEIPKPAQQL 1044
Query: 743 LKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMID 783
+ + ++++A +G ++I GK V ++T M + + ++ +
Sbjct: 1045 FRIVELKQIAKQLGFSRIRPDGKQHVILETPMAEPAWNLLAE 1086
>gi|352094377|ref|ZP_08955548.1| transcription-repair coupling factor [Synechococcus sp. WH 8016]
gi|351680717|gb|EHA63849.1| transcription-repair coupling factor [Synechococcus sp. WH 8016]
Length = 1180
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/690 (42%), Positives = 436/690 (63%), Gaps = 17/690 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S VDP ++ GD+VVH+ GIG+F K + S +Y+ ++Y+DG+ ++ Q
Sbjct: 479 SRTVDPNKMQQGDFVVHRNHGIGRFK--KLEKLAISGEVRDYLVVQYSDGILRVAADQLG 536
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ ++T P LSK+ + AW + K + A++K+ +DL++LY R + +
Sbjct: 537 S-LGRFRANSDT--PPQLSKMGGS-AWVKAKERASKAVRKVALDLVKLYAERHQAAGFAF 592
Query: 266 P-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P P E FPYEPT DQ KA +DV+RD+ E+ PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 593 PIDGPWQVELEDSFPYEPTSDQLKATVDVKRDM-EKPEPMDRLVCGDVGFGKTEVAIRAI 651
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F ++AGKQ +LAPT VLA+QH+ +SERF+ YP IKV LL+RF++ E++ L+ +K
Sbjct: 652 FKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYP-IKVALLNRFRTAGERKTILEELKT 710
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++ +VGTH LL ++ LGLLVVDEEQRFGV QKEKI + + VDVLTLSATPIPR
Sbjct: 711 GTIDAVVGTHQLLSKNTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPR 770
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PIKTHL+A E V SAI+ ELDRGGQVFYV+PR++G
Sbjct: 771 TLYMSLSGVREMSLITTPPPLRRPIKTHLAALDDEAVRSAIRQELDRGGQVFYVVPRVEG 830
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E+ L++ PG+ + +AHGQ +LE M F G +++CT IVESGLDI N
Sbjct: 831 IEDVAGKLREMLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGLDIPRVN 890
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+++D +FGLAQLYQLRGRVGR+ +AHA+LFYP + LS+ A +RL A++E +LG
Sbjct: 891 TILIEDAHRFGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSEAARQRLRAIQEFAQLGS 950
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ EML ESL+++ + +V Q+
Sbjct: 951 GYQLAMRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPAV--DDTQV 1008
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+ + +P+++I + M A + + L++ +YG P ++ LL+
Sbjct: 1009 DLQVTAFIPADWIVDADEKMSAYRAASECLSSE--ALVELAAGWADRYGALPGPVQSLLQ 1066
Query: 745 KLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAE 804
+ ++ +A G +I + ++T M + F+++ + +H + G A+
Sbjct: 1067 LMELKLLAKRCGFARIRPEKPNIALETPMEEPAFRLLRQGLPQHLHGRLVYQAGSGSVAK 1126
Query: 805 LLLE----LPREQLLNWIFQCLAELYASLP 830
+L LP ++ L+ + L ++ + +P
Sbjct: 1127 VLARGLGVLPMDRQLDELKGWLEQMASQIP 1156
>gi|123968563|ref|YP_001009421.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
AS9601]
gi|123198673|gb|ABM70314.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
AS9601]
Length = 1170
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 295/669 (44%), Positives = 430/669 (64%), Gaps = 17/669 (2%)
Query: 157 GDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPN 215
GD++VHK GIGKF+ I K ++ DS +Y+ I+Y DG + Q + RY
Sbjct: 494 GDFIVHKNHGIGKFLKIEKINITGDSR---DYLVIQYQDGKISVAADQLGSV-NRYRSSG 549
Query: 216 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEF 274
+ K P+ ++KL T WER K K K I+K+ VD+++LY R K K YP++ P E
Sbjct: 550 KIK-PK-INKLGGT-EWERIKDKNKKQIKKVAVDILKLYAKREKLKGYIYPEDGPWQDEL 606
Query: 275 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 334
FPY+PTPDQ A +++ D+ E E PMDRL+CGDVGFGKTEVA+RAIF +++GKQ
Sbjct: 607 EESFPYQPTPDQITAVEEIKSDM-ESEKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQV 665
Query: 335 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 394
++LAPT +LA+QH+ +S RFS YP IKV LL+RF++ E++E +K+ ++++V TH
Sbjct: 666 ILLAPTTILAQQHWRTISNRFSPYP-IKVSLLNRFKTVNERKEIYAGLKNNKIDLVVATH 724
Query: 395 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 454
+LG + NLGLLV+DEEQRFGV+QKEKI K S+DVLTLSATPIPRTLY++L+G R
Sbjct: 725 QILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKTSIDVLTLSATPIPRTLYMSLSGLR 784
Query: 455 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 514
SL++TPPP R IKT+L+ + + +AI ELDRGGQ+FYVLPRI + + ++ L+
Sbjct: 785 QMSLLNTPPPSRRSIKTYLAEIDMDVIRTAINQELDRGGQIFYVLPRISDINQALNKLKN 844
Query: 515 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 574
FP + +AHGQ +LE M F G + ++ICT I+ESGLDI NTII++D +F
Sbjct: 845 IFPSLKFIVAHGQMNETELENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIEDSHKF 904
Query: 575 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 634
GL+QLYQLRGRVGR+ +AHA+LFYPD + ++D A +RL A+++ ELG G+QLA KDM
Sbjct: 905 GLSQLYQLRGRVGRSSVQAHAWLFYPDINKINDAAKQRLKAIKDFSELGSGYQLAMKDME 964
Query: 635 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 694
IRG G++ GE+Q+G V +G DL+ EML E++S++ + V QID+ IN +P+
Sbjct: 965 IRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEV--NDTQIDLPINAFIPA 1022
Query: 695 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 754
+I + E +E A + ++ D L + +YG P +E L+ + ++ +A
Sbjct: 1023 TWILNREEKLEAYKSATECSKND--ELTELATDWVNRYGNLPKPVESLIMIMRLKLLAKK 1080
Query: 755 IGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTF-EGDQIKAELLLELPREQ 813
G +KI + ++T + FK++ +S+ S V +N F EG+Q+ + L +
Sbjct: 1081 CGFSKIKLKKPNILIETKLKNSTFKILKNSLASSV-QNKFNFNEGEQLSIITIRGLGATE 1139
Query: 814 LLNWIFQCL 822
+ N I Q +
Sbjct: 1140 IQNQIDQLM 1148
>gi|124025758|ref|YP_001014874.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
NATL1A]
gi|123960826|gb|ABM75609.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
NATL1A]
Length = 1167
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 294/657 (44%), Positives = 425/657 (64%), Gaps = 15/657 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S K+DP ++ GDYVVH+ GIG F I K ++ +S +Y+ I+Y DG + Q
Sbjct: 490 SKKIDPNKMKPGDYVVHRNHGIGLFQKIEKLNINGESR---DYLVIKYMDGKLSVAADQL 546
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
L RY N K P T+SKL W + K K K +++K+ +DL++LY R K+K
Sbjct: 547 GS-LGRYRSSN-AKTP-TISKLGGAN-WNKIKEKAKKSVKKVAIDLIKLYAERSKEKGYK 602
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+P + P +E FPY TPDQ A V+ D+ E E PMDRL+CGDVGFGKTEVA+RA
Sbjct: 603 FPCDGPWQSELEDSFPYALTPDQATATSQVKSDM-ESEKPMDRLVCGDVGFGKTEVAIRA 661
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF +++GKQ +LAPT VL++QH+ +S+RF+ YP IKV LL+RF++ +EK+ + +K
Sbjct: 662 IFKAITSGKQIALLAPTTVLSQQHWRTISDRFAPYP-IKVSLLNRFKTNSEKKHIVSGLK 720
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++ +VGTH LL ++VY +LGLLV+DEEQRFGV QKEKI K SVDVLTLSATPIP
Sbjct: 721 AGQIDAVVGTHQLLNKKLVYKDLGLLVIDEEQRFGVNQKEKIKELKKSVDVLTLSATPIP 780
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHL+ E + SAI E+DRGGQ+FY++PRIK
Sbjct: 781 RTLYMSLSGVREMSLITTPPPLRRPIKTHLAPLDNEIIRSAISQEIDRGGQIFYIVPRIK 840
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+E+ + L+ P V + IAHGQ LE M F G IL+CT IVESGLDI
Sbjct: 841 GIEDVAEKLKIMIPNVKLLIAHGQMEEGALENAMLAFNAGEADILLCTTIVESGLDIPRV 900
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D +FGL+QLYQLRGRVGR+ +AHA+LFYP L++ + +RL A++E +LG
Sbjct: 901 NTILIEDSHKFGLSQLYQLRGRVGRSGVQAHAWLFYPSDEKLNETSRQRLKAIKEFSDLG 960
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G I G +Q+G + +G DL+ E+L E+++++ + SV Q
Sbjct: 961 SGYQLAMRDMEIRGVGNILGIEQSGQMETIGFDLYMELLQETIAEIQGQDIPSV--DDTQ 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ + +P ++I + + A + D L+QF +L +YG P ++E L+
Sbjct: 1019 IDLPVTAFIPGDWITDPDEKINAYRLATQCENND--SLVQFASNLVDRYGTLPKAVESLI 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 800
+ + ++ +A G ++I S V ++T M++ FK++ + + +H + +GD+
Sbjct: 1077 EVMKLKIIAKKCGFSRIKLSKPNVELETMMDEPAFKLLRKGLANHLHGRFIYKKGDR 1133
>gi|37523406|ref|NP_926783.1| transcription-repair coupling factor [Gloeobacter violaceus PCC 7421]
gi|35214410|dbj|BAC91778.1| transcription-repair coupling factor [Gloeobacter violaceus PCC 7421]
Length = 1154
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 295/690 (42%), Positives = 433/690 (62%), Gaps = 21/690 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S ++D L GD+VVH+ GIG+F K + S EY+ IEYADG+ ++ Q +
Sbjct: 479 SKQIDLDKLNPGDFVVHRSHGIGRFA--KLEKLTVSGSAREYLVIEYADGILRVAADQMN 536
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L RY T + LS++ + +WE+ K K K AIQK+ DL++LY R ++ R P+
Sbjct: 537 S-LSRYRSTGGTVQ---LSRMG-SKSWEKTKQKVKKAIQKIAFDLLDLYARRAQESRIPF 591
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY TPDQ +A +V+ D+ E E PMDRL+CGDVGFGKTEVA+RA
Sbjct: 592 PPDQPWQREMEESFPYPLTPDQARAIQEVKIDM-ESERPMDRLVCGDVGFGKTEVAIRAA 650
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F +++G Q VL PT VLA QH+ ERF+ YP I +GLL+RF++ +EK++ L +
Sbjct: 651 FKALTSGVQCAVLVPTTVLASQHYHTFKERFAPYP-ISIGLLNRFRTASEKKDLLARLAT 709
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L++++GTH LLG+ V + NLGLLV+DEEQRFGV QKEKI + K VDVLTL+ATPIPR
Sbjct: 710 GELDLVIGTHQLLGAGVRFQNLGLLVIDEEQRFGVAQKEKIKTLKTQVDVLTLTATPIPR 769
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY++L+G R+ SLI+TPPP R PIKTHL+ + E V +AI EL RGGQ+FYV RI+
Sbjct: 770 TLYMSLSGVREMSLITTPPPSRRPIKTHLAPYDPEHVRTAILQELGRGGQIFYVYNRIED 829
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+++ LQ P + + HGQ +LE TM F+ G IL+CT I+ESGLDI N
Sbjct: 830 IQDVAARLQAMIPTARVCVGHGQMEEGELESTMLAFSGGEFDILVCTTIIESGLDIPRVN 889
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TI+V++ QFGL+QLYQLRGRVGR+ +AHA++FY + L+D+A +RL A++E +LG
Sbjct: 890 TILVENAHQFGLSQLYQLRGRVGRSGVQAHAWMFYKQEEALTDEARKRLRAIQEFTQLGS 949
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G+QLA +DM IRG G + G +Q+G + +G DL+ E+L E++ ++ + V + QI
Sbjct: 950 GYQLAMRDMEIRGVGNLLGAEQSGQLNAIGFDLYMELLEEAIQEIRGRKLPKV--EDTQI 1007
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAE--QDIWCLMQFTESLRRQYGKEPYSMEIL 742
D+ + +P++YI LE M + A + Q +++TE +YG P + + L
Sbjct: 1008 DLRVTAFIPADYIPDLEQKMRAYRQVAAAPDRAQLQAAALEWTE----RYGPVPPAAQQL 1063
Query: 743 LKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 802
L+ + ++++A +G +I G + ++T M ++ + ++ +EV R F+ ++
Sbjct: 1064 LRVMELKQVARALGFARIRPEGTNIVLETPMEAPAWEQIHQALPAEV-RGRFFFQPGKVT 1122
Query: 803 AELLLELPREQLLNWIFQCLAELYASLPAL 832
L LP Q L + Q L ++ LP+L
Sbjct: 1123 VRNLGVLPSAQQLENLVQWLDKV--QLPSL 1150
>gi|72382209|ref|YP_291564.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
NATL2A]
gi|72002059|gb|AAZ57861.1| transcription-repair coupling factor [Prochlorococcus marinus str.
NATL2A]
Length = 1167
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 294/657 (44%), Positives = 424/657 (64%), Gaps = 15/657 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S K+DP ++ GDYVVH+ GIG F I K ++ +S +Y+ I+Y DG + Q
Sbjct: 490 SKKIDPNKMKPGDYVVHRNHGIGLFQKIEKLNINGESR---DYLVIKYMDGKLSVAADQL 546
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
L RY N K P T+SKL W + K K K +++K+ +DL++LY R K+K
Sbjct: 547 GS-LGRYRSSN-AKTP-TISKLGGAN-WNKIKEKAKKSVKKVAIDLIKLYAERSKEKGYK 602
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+P + P E FPY TPDQ A V+ D+ E E PMDRL+CGDVGFGKTEVA+RA
Sbjct: 603 FPCDGPWQNELEDSFPYALTPDQATATSQVKSDM-ESEKPMDRLVCGDVGFGKTEVAIRA 661
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF +++GKQ +LAPT VL++QH+ +S+RF+ YP IKV LL+RF++ +EK+ + +K
Sbjct: 662 IFKAITSGKQIALLAPTTVLSQQHWRTISDRFAPYP-IKVSLLNRFKTNSEKKHIVSGLK 720
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++ +VGTH LL ++VY +LGLLV+DEEQRFGV QKEKI K SVDVLTLSATPIP
Sbjct: 721 DGQIDAVVGTHQLLNKKLVYKDLGLLVIDEEQRFGVNQKEKIKELKKSVDVLTLSATPIP 780
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHL+ E + SAI E+DRGGQ+FY++PRIK
Sbjct: 781 RTLYMSLSGVREMSLITTPPPLRRPIKTHLAPLDNEIIRSAISQEIDRGGQIFYIVPRIK 840
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+E+ + L+ P V + IAHGQ LE M F G IL+CT IVESGLDI
Sbjct: 841 GIEDVAEKLKIMIPNVKLLIAHGQMEEGALENAMLAFNAGEADILLCTTIVESGLDIPRV 900
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D +FGL+QLYQLRGRVGR+ +AHA+LFYP L++ + +RL A++E +LG
Sbjct: 901 NTILIEDSHKFGLSQLYQLRGRVGRSGVQAHAWLFYPSDEKLNETSRQRLKAIKEFSDLG 960
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G I G +Q+G + +G DL+ E+L E+++++ + SV Q
Sbjct: 961 SGYQLAMRDMEIRGVGNILGIEQSGQMETIGFDLYMELLQETIAEIQGQDIPSV--DDTQ 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ + +P ++I + + A + D L+QF +L +YG P ++E L+
Sbjct: 1019 IDLPVTAFIPGDWITDPDEKINAYRLATQCENND--SLVQFASNLVDRYGTLPKAVESLI 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 800
+ + ++ +A G ++I S V ++T M++ FK++ + + +H + +GD+
Sbjct: 1077 EVMKLKIIAKKCGFSRIKLSKPNVELETMMDEPAFKLLRKGLANHLHGRFIYKKGDK 1133
>gi|113475354|ref|YP_721415.1| transcription-repair coupling factor [Trichodesmium erythraeum
IMS101]
gi|110166402|gb|ABG50942.1| transcription-repair coupling factor [Trichodesmium erythraeum
IMS101]
Length = 1180
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 301/691 (43%), Positives = 440/691 (63%), Gaps = 19/691 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +V+P L+ GD+VVH++ GIGKFV ++ + T +Y+ I+YADG+ ++ Q S
Sbjct: 491 SKQVNPNKLQPGDHVVHRQHGIGKFVKLESLTLNNETR--DYLTIQYADGLLRVAADQLS 548
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R + K+P+ L+KL+ T WE K K + +I+K+ VDL++LY R +Q +
Sbjct: 549 S-LSRLR-STDHKKPQ-LNKLTGKT-WESTKNKVRKSIKKLAVDLLKLYAQRAQQTGYSF 604
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PTPDQ KA DV+RD+ E E MDRL+CGDVGFGKTEVA+RAI
Sbjct: 605 PPDTPWQEEMEDSFPYQPTPDQLKATQDVKRDM-ESERAMDRLVCGDVGFGKTEVAIRAI 663
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V A KQ LAPT VL +QH+ + ERF+ YP I++GLL+RF++ EK+E +
Sbjct: 664 FKAVIAEKQVAFLAPTTVLTQQHYHTLKERFAPYP-IEIGLLNRFRTPNEKKEIQHRLAT 722
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G L+IIVGTHS+L + + LGLLVVDEEQRFGV QKEKI + K VDVLTL+ATPIPR
Sbjct: 723 GELDIIVGTHSILSKTIQFRELGLLVVDEEQRFGVNQKEKIKALKAEVDVLTLTATPIPR 782
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TLY+AL+G R+ S+I+TPPP R PIKTHL+ + E +AI+ EL+RGGQVFYV+PRI+G
Sbjct: 783 TLYMALSGIREMSVITTPPPLRRPIKTHLAPYDLETARTAIRQELNRGGQVFYVVPRIEG 842
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE L++ PG I I HG+ + +LE M F+ G IL+CT I+ESGLDI N
Sbjct: 843 IEELAGKLREMIPGARINIGHGKMDAAELESIMLTFSAGEADILVCTTIIESGLDIPRVN 902
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS----LLSDQALERLAALEECR 620
TI+++D Q+FGL+QLYQLRGRVGRA +AHA+LFYP S L+D A +RL A++E
Sbjct: 903 TILIEDAQKFGLSQLYQLRGRVGRAGVQAHAWLFYPTTSSGGIALTDDAQKRLRAIQEFT 962
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYK 680
+LG G+ LA +D+ IRG G I G +Q+G V +G DL+ EML E++ ++ + V
Sbjct: 963 QLGSGYHLAIRDLEIRGAGDILGAEQSGQVNAIGFDLYTEMLEEAIREIKGQEIPQV--D 1020
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
+ID+++ +P++YI L+ + A ++ L Q +YG P +
Sbjct: 1021 DTKIDLSLTAFIPADYILDLDQKISAYRSVAAANTRE--ELSQIEVDWSDRYGAIPKAGL 1078
Query: 741 ILLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGD 799
LL+ + ++++A IG ++I GK V ++T M + + ++ + + + ++ F
Sbjct: 1079 QLLRMMELKQVAKKIGFSRIKVEGKQHVILETPMEEPGWNLLKEKLPGHL-QSRFVFSKG 1137
Query: 800 QIKAELLLELPREQLLNWIFQCLAELYASLP 830
++ L L ++ L + + L+++ ++P
Sbjct: 1138 KVIVRGLGVLSADKQLESLIEWLSKMEGAIP 1168
>gi|443475907|ref|ZP_21065838.1| transcription-repair coupling factor [Pseudanabaena biceps PCC 7429]
gi|443019192|gb|ELS33321.1| transcription-repair coupling factor [Pseudanabaena biceps PCC 7429]
Length = 1136
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 300/650 (46%), Positives = 415/650 (63%), Gaps = 16/650 (2%)
Query: 144 GFSYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVK 202
S +VD L GDYVVHK G+G+F+ + K V ++ EY+ ++Y DG+ ++ V
Sbjct: 459 AVSKQVDLNKLAPGDYVVHKNHGVGQFLKLEKLTVNNETR---EYLVLKYDDGLLRVVVD 515
Query: 203 QASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
Q S +L RY NE+K L K++ AW K K AI+K+ DL+ELY R +Q
Sbjct: 516 QMS-ILSRYRGMNESKP--ELHKMTGK-AWTNTTNKAKKAIKKIAFDLLELYAKRSQQVG 571
Query: 263 PPYP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
+P NP E FPY+ TPDQ KA DV++D+ E PMDRL+CGDVGFGKTEVA+
Sbjct: 572 YAFPPDNPWQQEMEDSFPYQATPDQLKATQDVKQDM-ESSRPMDRLVCGDVGFGKTEVAI 630
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
R IF V+ GKQA +L PT +LA+QH+ + ER++ YP I + LL+RF++K EK+E
Sbjct: 631 RTIFKAVTTGKQAALLVPTTILAQQHYHSLQERYAAYP-INIALLNRFRTKVEKKEICRK 689
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+K G L+I+VGTH LL V + +LGLLV+DEEQRFGV QKEKI + K VDVLTLSATP
Sbjct: 690 LKTGELDIVVGTHQLLSKDVEFKDLGLLVIDEEQRFGVAQKEKIKTMKTEVDVLTLSATP 749
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTLY+A++G R+ SLI+TPPP R I THLS ++ E V +AI+ ELDRGGQ+FYV+ R
Sbjct: 750 IPRTLYMAMSGVREMSLITTPPPSRRSIMTHLSRYNPELVRAAIRQELDRGGQIFYVVSR 809
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
I +EE + + P V +AIAHGQ +LE TM F+ G ++ICT I+ESGLDI
Sbjct: 810 IDDIEEVSARVHEMLPSVRMAIAHGQMPESELESTMLNFSSGESDMMICTTIIESGLDIP 869
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NTII++D Q+FGLAQLYQLRGRVGRA +AHA+LFY +K L+D A +RL A++E
Sbjct: 870 RVNTIIIEDAQRFGLAQLYQLRGRVGRAGIQAHAWLFYQEKGELTDIARKRLKAIQEFTH 929
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS 681
LG G+QLA +DM IRG G + G +Q+G + +G DL+ EML E+++++ + V +
Sbjct: 930 LGSGYQLAMRDMEIRGVGNLLGAEQSGQINTIGFDLYMEMLQEAIAEIRGSEIPEV--ED 987
Query: 682 VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
Q+D+ I +P+EYI + M + + LMQ E R YGK P
Sbjct: 988 TQVDLPITAFIPTEYIPDGDRKMSAYRTVASVSSRR--ELMQIIEEWRDCYGKVPVPAMQ 1045
Query: 742 LLKKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVH 790
L+K + ++ +A IG +I GK V +++ M + +K++ + S +
Sbjct: 1046 LIKVMELKLLAKRIGFFRIKPEGKQHVVLESKMEEPAWKLLHQHLPSHLQ 1095
>gi|428768769|ref|YP_007160559.1| transcription-repair coupling factor [Cyanobacterium aponinum PCC
10605]
gi|428683048|gb|AFZ52515.1| transcription-repair coupling factor [Cyanobacterium aponinum PCC
10605]
Length = 1197
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 300/686 (43%), Positives = 444/686 (64%), Gaps = 24/686 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VD LR D++VHK GIG+F+ ++ + EY+ I+YADG+ ++P +
Sbjct: 524 SKQVDLDKLRPKDFIVHKYHGIGQFLELEVYEGR------EYLVIKYADGLLRVPA-DSL 576
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
++ RY ETK P+ L+K+S W+ K K K +I+K+ VDL++LY R + K Y
Sbjct: 577 ELVSRYR-HTETKPPK-LNKMSGK-EWQNVKNKVKKSIKKLAVDLVKLYATRNELKGYAY 633
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+ TPDQ KA +DV+RDL E + PMDRL+CGDVGFGKTEVA+R+I
Sbjct: 634 PPDSPWQTELEDSFPYQATPDQLKAIIDVKRDL-ESDRPMDRLVCGDVGFGKTEVAIRSI 692
Query: 325 FCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F VV++G KQ + LAPT +L++QH+ + ERF+ YP I +GLL+RF++ +E++E + +
Sbjct: 693 FKVVTSGNKQVVFLAPTTILSQQHYHTLVERFAPYP-INIGLLNRFRTASERKEIIQKLA 751
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+++VGT LL +++ Y +LGLLVVDEEQRFGV QKEKI + K S+DVLTLSATPIP
Sbjct: 752 TGELDVVVGTQLLLSNKIKYKDLGLLVVDEEQRFGVNQKEKIKALKTSIDVLTLSATPIP 811
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++++G R+ SLI+TPPP R PIKTH+ F++E + +AI+ ELDRGGQ+FYV+PRI+
Sbjct: 812 RTLYMSISGVREMSLITTPPPSRRPIKTHIMPFNQEVIRTAIRNELDRGGQIFYVVPRIE 871
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+E+ + L+Q P + IAIAHGQ QLE TM F+ G +L+CT IVESGLDI
Sbjct: 872 GMEKIITMLEQMIPSLRIAIAHGQLDEGQLESTMLGFSNGEADLLLCTTIVESGLDIPRV 931
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTIIV+ +FGL+QLYQLRGRVGR+ +AHA+L YP+ +LSD A +RL AL+E +LG
Sbjct: 932 NTIIVESAHKFGLSQLYQLRGRVGRSGIQAHAWLLYPNDEILSDVAKKRLRALQEFSQLG 991
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+ LA +DM IRG G + G +Q+G + +G +++ EML E+++++ + V + Q
Sbjct: 992 SGYHLAMRDMEIRGVGNLLGAEQSGQMEAIGFEMYTEMLKEAINEIQGQEIPQV--EDTQ 1049
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ + +P+ YI +E M+ Q + Q + +YG+ P S LL
Sbjct: 1050 IDLKLTALIPNRYIADMEQKMDAYRAVATVTSQR--EIKQIESDWQDRYGEIPESARELL 1107
Query: 744 KKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 802
++ A IG ++I GK + ++T M + + ++ + + + RN + +++
Sbjct: 1108 LVAELKLKAKSIGFSRIKPEGKQNIIIETPMQEPAWLLLAEKLPPHL-RNRFVYGKNKVI 1166
Query: 803 AELLLEL-PREQLL---NWIFQCLAE 824
L + P +QL NW ++E
Sbjct: 1167 VRGLGTMKPSQQLENLNNWFTYLVSE 1192
>gi|254527187|ref|ZP_05139239.1| transcription-repair coupling factor [Prochlorococcus marinus str.
MIT 9202]
gi|221538611|gb|EEE41064.1| transcription-repair coupling factor [Prochlorococcus marinus str.
MIT 9202]
Length = 1169
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 290/656 (44%), Positives = 422/656 (64%), Gaps = 22/656 (3%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASR 206
K++P GD++VHK GIGKF+ I K ++ DS +Y+ I+Y DG + Q
Sbjct: 490 KINP-----GDFIVHKNHGIGKFLKIEKINITGDSR---DYLVIQYQDGKISVAADQLGS 541
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP 266
+ RY + K P+ ++KL T WER K K K I+K+ VD+++LY R K K YP
Sbjct: 542 V-NRYRSSGKIK-PK-INKLGGT-EWERIKDKNKKQIKKVAVDILKLYAKREKLKGYIYP 597
Query: 267 KN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
++ P E FPY+PTPDQ A +++ D+ E + PMDRL+CGDVGFGKTEVA+RAIF
Sbjct: 598 EDGPWQDELEESFPYQPTPDQITAVEEIKSDM-ESDKPMDRLVCGDVGFGKTEVAVRAIF 656
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
+++GKQ ++LAPT +LA+QH+ ++ RFS YP IKV LL+RF++ E+ E +K+
Sbjct: 657 KAITSGKQVILLAPTTILAQQHWRTINNRFSPYP-IKVSLLNRFKTVNERNEIYAGLKNN 715
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++++V TH +LG NLGLLV+DEEQRFGV+QKEKI K ++DVLTLSATPIPRT
Sbjct: 716 EIDLVVATHQILGKETEIKNLGLLVIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRT 775
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
LY++L+G R SL++TPPP R IKT+LS + + +AI ELDRGGQ+FYVLPRI +
Sbjct: 776 LYMSLSGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAINQELDRGGQIFYVLPRISDI 835
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
++ ++ L+ FP + +AHGQ +LE M F G + ++ICT I+ESGLDI NT
Sbjct: 836 DQAVNKLKIMFPSLKFIVAHGQMNETELENAMIAFNNGEVDLMICTTIIESGLDIPKVNT 895
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
II++D +FGL+QLYQLRGRVGR+ +AHA+LFYP+ + ++D A +RL A+++ ELG G
Sbjct: 896 IIIEDSHKFGLSQLYQLRGRVGRSGVQAHAWLFYPNINKINDAAKQRLKAIKDFSELGSG 955
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
+QLA KDM IRG G++ GE+Q+G V +G DL+ EML E++S++ + V QID
Sbjct: 956 YQLAMKDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEV--NDTQID 1013
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ IN +P+ +I + E +E A + + D L + +YG P +E L+
Sbjct: 1014 LPINAFIPATWILNREEKLEAYKSATECSNND--ELTELATDWVNRYGNLPKPVESLIMI 1071
Query: 746 LYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTF-EGDQ 800
+ ++ +A G KI + ++T + FK++ +S+ S V +N F EG+Q
Sbjct: 1072 MRLKLLAKKCGFNKIKLKKPNIVIETKLKNSTFKILKNSLASSV-QNKFNFNEGEQ 1126
>gi|126696368|ref|YP_001091254.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9301]
gi|126543411|gb|ABO17653.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9301]
Length = 1169
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 288/648 (44%), Positives = 418/648 (64%), Gaps = 17/648 (2%)
Query: 157 GDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPN 215
GD++VHK GIGKF+ I K ++ DS +Y+ I+Y DG + Q + RY
Sbjct: 494 GDFIVHKNHGIGKFLKIEKINLTGDSR---DYLVIQYQDGKISVAADQLGSV-NRYRSSG 549
Query: 216 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEF 274
+ K P+ ++KL T WER K K K I+K+ VD+++LY R K K YP++ P E
Sbjct: 550 KIK-PK-INKLGGT-EWERIKDKNKKQIKKVAVDILKLYAKREKLKGHIYPEDGPWQDEL 606
Query: 275 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 334
FPY+PTPDQ A +++ D+ E + PMDRL+CGDVGFGKTEVA+RAIF +++GKQ
Sbjct: 607 EESFPYQPTPDQITAVKEIKSDM-ESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQV 665
Query: 335 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 394
+ LAPT +LA+QH+ ++ RFS YP IKV LL+RF+S E+ E +K+ ++++V TH
Sbjct: 666 IFLAPTTILAQQHWRTINNRFSPYP-IKVSLLNRFKSINERREIYAGLKNNKIDLVVATH 724
Query: 395 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 454
+LG + NLGLLV+DEEQRFGV+QKEKI K ++DVLTLSATPIPRTLY++L+G R
Sbjct: 725 QILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRTLYMSLSGLR 784
Query: 455 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 514
SL++TPPP R IKT+LS + + +AI ELDRGGQ+FYVLPRI +++ +D L+
Sbjct: 785 QMSLLNTPPPSRRSIKTYLSEIDMDVIRTAINKELDRGGQIFYVLPRISDIDQAIDKLKN 844
Query: 515 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 574
P + +AHGQ +LE M F G + ++ICT I+ESGLDI NTII++D +F
Sbjct: 845 MIPNLKFIVAHGQMNETELENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIEDSHKF 904
Query: 575 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 634
GL+QLYQLRGRVGR+ +AHA+LFYP+ + ++D A +RL A+++ ELG G+QLA KDM
Sbjct: 905 GLSQLYQLRGRVGRSGVQAHAWLFYPNINKINDAAKQRLKAIKDFSELGSGYQLAMKDME 964
Query: 635 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 694
IRG G++ GE+Q+G V +G DL+ EML E++S++ + V QID+ IN +P+
Sbjct: 965 IRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEV--NDTQIDLPINAFIPA 1022
Query: 695 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 754
+I + E +E A + + + L + +YG P +E L+ + ++ +A
Sbjct: 1023 TWILNREEKLEAYKSATECSNN--YELTELATDWVNRYGNLPKPVESLIMIMRLKLLAKK 1080
Query: 755 IGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTF-EGDQI 801
G KI + ++T + FK++ +S+ S V +N F EG+Q+
Sbjct: 1081 CGFNKIKLKKPNILIETKLKNSTFKILKNSLASSV-QNKFNFNEGEQL 1127
>gi|157413397|ref|YP_001484263.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9215]
gi|157387972|gb|ABV50677.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9215]
Length = 1169
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 288/647 (44%), Positives = 419/647 (64%), Gaps = 17/647 (2%)
Query: 157 GDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPN 215
GD++VHK GIGKF+ I K ++ DS +Y+ I+Y DG + Q + RY
Sbjct: 494 GDFIVHKNHGIGKFLKIEKINITGDSR---DYLVIQYQDGKISVAADQLGSV-NRYRSSG 549
Query: 216 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEF 274
+ K P+ ++KL T WER K K K I+K+ VD+++LY R K K YP++ P E
Sbjct: 550 KIK-PK-INKLGGT-EWERIKDKNKKQIKKVAVDILKLYAKREKLKGYIYPEDGPWQDEL 606
Query: 275 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 334
FPY+PTPDQ A +++ D+ E + PMDRL+CGDVGFGKTEVA+RAIF +++GKQ
Sbjct: 607 EESFPYQPTPDQITAVEEIKSDM-ESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQV 665
Query: 335 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 394
++LAPT +LA+QH+ ++ RFS YP IKV LL+RF++ E++E +K+ ++++V TH
Sbjct: 666 ILLAPTTILAQQHWRTINNRFSPYP-IKVSLLNRFKTVNERKEIYAGLKNNKIDLVVATH 724
Query: 395 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 454
+LG + NLGLLV+DEEQRFGV+QKEKI K ++DVLTLSATPIPRTLY++L+G R
Sbjct: 725 QILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRTLYMSLSGLR 784
Query: 455 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 514
SL++TPPP R IKT+LS + + +AI ELDRGGQ+FYVLPRI +++ ++ L+
Sbjct: 785 QMSLLNTPPPSRRSIKTYLSEIDMDVIRTAINQELDRGGQIFYVLPRISDIDQAVNKLKI 844
Query: 515 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 574
FP + +AHGQ LE M F G + ++ICT I+ESGLDI NTII++D +F
Sbjct: 845 MFPSLKFIVAHGQMNETDLENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIEDSHKF 904
Query: 575 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 634
GL+QLYQLRGRVGR+ +AHA+LFYP+ + ++D A +RL A+++ ELG G+QLA KDM
Sbjct: 905 GLSQLYQLRGRVGRSGVQAHAWLFYPNINKINDAAKQRLKAIKDFSELGSGYQLAMKDME 964
Query: 635 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 694
IRG G++ GE+Q+G V +G DL+ EML E++S++ + V QID+ IN +P+
Sbjct: 965 IRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEV--NDTQIDLPINAFIPA 1022
Query: 695 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 754
+I + E +E A + + D L + +YG P +E L+ + ++ +A
Sbjct: 1023 TWILNREEKLEAYKSATECSNND--ELTELATDWVNRYGNLPKPVESLIMIMRLKLLAKK 1080
Query: 755 IGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTF-EGDQ 800
G KI + ++T + FK++ +S+ S V +N F EG+Q
Sbjct: 1081 CGFNKIKLKKPNIVIETKLKNSTFKILKNSLASSV-QNKFNFNEGEQ 1126
>gi|145346965|ref|XP_001417951.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578179|gb|ABO96244.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 754
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 299/760 (39%), Positives = 469/760 (61%), Gaps = 43/760 (5%)
Query: 94 RPVMDSEEADKYIQLVKEQQQKGLQKLKGKKSGGGGAGAGAGDSGYNGAGGFSYKVDPYS 153
R MDS EAD+ + + E + +K + + G A G + +DP+
Sbjct: 19 RTSMDSSEADEQVDDMLESAAEVEEKNRRVRDGY-----------VEDAFGVNNAIDPFK 67
Query: 154 LRSGDYVVHKKVGIGKFVGIKF---DVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYR 210
L +G+YVVH+K GIG+F+G+K + + T ++F++Y D AK+ + + R+LYR
Sbjct: 68 LVTGEYVVHRKYGIGQFLGMKVLAVESANEGTQNKPFLFLKYQDATAKISPEASRRLLYR 127
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNP 269
+ P +P L+KL+D + W+ R+ K + I+++VV+ M +YL RL+ R PYP +P
Sbjct: 128 FCSPGGLVKPPKLNKLNDKSTWDLRERKTEATIRRLVVNQMVVYLQRLQCVREPYPLPDP 187
Query: 270 AIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328
A +F A FP+ TPDQ A ++ DL +++ PMDRL+ GDVGFGKTEVA+RA+F V
Sbjct: 188 ERAKQFDASFPFTLTPDQTSAIQEITEDL-QQDAPMDRLVIGDVGFGKTEVAMRAMFHVA 246
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 388
S+G ++APT VLAKQH ++ RF I V L++R A++ D + G +
Sbjct: 247 SSGGGVFMMAPTTVLAKQHAANLAVRFRPL-GINVELVTRHIQAAKQNTIFDDFRDGKVQ 305
Query: 389 IIVGTHSLLG-SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
IIVGTH L+ + Y L LLV+DEEQRFGVK K++I++ K VDVLTLSATPIPRTL+
Sbjct: 306 IIVGTHKLVNLEQEYYKQLRLLVIDEEQRFGVKHKDQISALKAEVDVLTLSATPIPRTLH 365
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+A++GFRDASL+ TPPPER PI T L+ + + + AI+YE+ R GQ++Y++PRI + +
Sbjct: 366 MAMSGFRDASLVQTPPPERRPINTVLAPQNDDDIRKAIEYEISRNGQIYYIVPRINMMRD 425
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
D L + FP + I AHGQ +++ ME F+ G+ +LI T IVESGLDI N NTII
Sbjct: 426 ACDRLLRLFPNLQIMTAHGQMDGEAIDDAMESFSNGSADVLIATTIVESGLDIPNCNTII 485
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGF 626
+++VQ FGLA LYQLRGRVGRA ++A+AY+FY D+S L+ A ERLAALEEC LG+GF
Sbjct: 486 IENVQFFGLASLYQLRGRVGRAGRQAYAYMFYSADESELTTGAQERLAALEECCGLGEGF 545
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI-- 684
+L+E+DMGIRG GT+FGE+Q+GDV +VG DL+ E+L++ L ++D + ++ V++
Sbjct: 546 RLSERDMGIRGVGTMFGEKQSGDVDSVGADLYLELLYKQLQRIDNLRIKTIDADDVRVGA 605
Query: 685 ---DININPRL--PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGK-EPYS 738
+ I P +E + ++ ++ + E+ D+ LM R +G+ + +S
Sbjct: 606 AGYEFGITPFYIATTEASDEVKATIDSITAHEQV--HDVLALM------RDTFGEPDEFS 657
Query: 739 MEILLKKLYVRRMAADIGITKIY---ASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLT 795
+ + + +R +A D+GI I + ++ + T+ + V +++++ + S+ + +
Sbjct: 658 LSCVFAR-EMRILAGDLGIQGILLDSPTAPIIDLITDASIMVKELLVEGI-SDAYDVEII 715
Query: 796 FEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY 835
G I+ + + ++ + + + L ++ S+P+ +KY
Sbjct: 716 DTG--IRLKTMTDMTMHGKVMYTVKILRQITGSIPSFVKY 753
>gi|78779345|ref|YP_397457.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9312]
gi|78712844|gb|ABB50021.1| transcription-repair coupling factor [Prochlorococcus marinus str.
MIT 9312]
Length = 1174
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 286/646 (44%), Positives = 421/646 (65%), Gaps = 17/646 (2%)
Query: 157 GDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPN 215
GD++VHK GIGKF+ I K ++ DS +Y+ I+Y DG + Q + RY
Sbjct: 494 GDFIVHKNHGIGKFLKIEKINITGDSR---DYLVIQYQDGKISVAADQLGSV-NRYRSSG 549
Query: 216 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEF 274
+ K P+ ++KL T WER K K K I+K+ VD+++LY R K K YP++ P E
Sbjct: 550 KIK-PK-INKLGGT-EWERIKDKNKKQIKKVAVDILKLYAKREKLKGHIYPEDGPWQDEL 606
Query: 275 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 334
FPY+PTPDQ A +++ D+ E + PMDRL+CGDVGFGKTEVA+RAIF +++GKQ
Sbjct: 607 EESFPYQPTPDQITAVKEIKSDM-ESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQV 665
Query: 335 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 394
++LAPT +LA+QH+ ++ RFS YP IKV LL+RF++ E++E +K+ ++++V TH
Sbjct: 666 ILLAPTTILAQQHWRTINNRFSPYP-IKVSLLNRFKTVNERKEIYAGLKNNKIDLVVATH 724
Query: 395 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 454
+LG + NLGLLV+DEEQRFGV+QKEKI K ++DVLTLSATPIPRTLY++L+G R
Sbjct: 725 QILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKTNIDVLTLSATPIPRTLYMSLSGLR 784
Query: 455 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 514
SL++TPPP R IKT+LS + + +AI ELDRGGQ+FYVLPRI +++ ++ L+
Sbjct: 785 QMSLLNTPPPSRRSIKTYLSEIDMDVIRTAINQELDRGGQIFYVLPRISDIDQAVNKLKN 844
Query: 515 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 574
FP + IAHGQ +LE +M F G + ++ICT I+ESGLDI NTII++D +F
Sbjct: 845 MFPNLKFIIAHGQMNETELENSMISFNNGEVDLMICTTIIESGLDIPKVNTIIIEDSHKF 904
Query: 575 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 634
GL+QLYQLRGRVGR+ +AHA+LFYP+ + ++D A +RL A+++ ELG G+QLA KDM
Sbjct: 905 GLSQLYQLRGRVGRSGIQAHAWLFYPNLNKINDSAKQRLKAIKDFSELGSGYQLAMKDME 964
Query: 635 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 694
IRG G++ GE+Q+G V +G DL+ EML E++S++ + V QID+ IN +P+
Sbjct: 965 IRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEVS--DTQIDLQINAFIPA 1022
Query: 695 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 754
+I + E ++ A + + L + + +YG P +E L+ + ++ +A
Sbjct: 1023 TWILNREEKLDAYKSATECSNNK--ELTELAKDWINRYGTLPKPVESLIMLMKLKLIAKK 1080
Query: 755 IGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTF-EGD 799
G KI + ++T + K FK++ +S+ + V +N F EG+
Sbjct: 1081 CGFNKIKLKKPNIIIETKLRKSTFKILKNSLPNSV-QNKFNFNEGE 1125
>gi|159903468|ref|YP_001550812.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9211]
gi|159888644|gb|ABX08858.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9211]
Length = 1169
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 291/690 (42%), Positives = 440/690 (63%), Gaps = 28/690 (4%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQA 204
S +D LR+GDYVVH+ GIGKF+ I KF + ++S +Y+ ++Y DG ++ Q
Sbjct: 489 SKSIDHNKLRTGDYVVHRNHGIGKFIKIEKFVISQESR---DYLLVQYQDGTLRVAADQL 545
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
L RY ++ K PR + KL T AW K K + +I K+ +DL+ LY R K +
Sbjct: 546 GS-LGRYRSSSD-KSPR-IGKLGGT-AWLNAKEKARKSINKVAIDLIRLYAERNKTEGYS 601
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+P + P +E F YEPT DQ A DV+ D+ E+ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 602 FPPDAPWQSELEDAFQYEPTHDQLTAIKDVKNDM-EKPKPMDRLVCGDVGYGKTEVAIRA 660
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
+F + +GKQA +LAPT +L++QH+ +S+RF+ YP IK+ LL+RF++ EK ++ +K
Sbjct: 661 LFKAIISGKQAALLAPTTILSQQHWRTLSDRFAPYP-IKIALLNRFKTSREKNAIVEELK 719
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++++VGTH +L ++V + +LGLLVVDEEQRFGVKQKE+I FK ++DVLTL+ATPIP
Sbjct: 720 SGTIDLVVGTHLILSNKVCFKDLGLLVVDEEQRFGVKQKERIKQFKKNIDVLTLTATPIP 779
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R IKTHL + +E + SAI E+DRGGQ+FYV+PRI+
Sbjct: 780 RTLYMSLSGVREMSLITTPPPLRRAIKTHLIPYEEEAIRSAICQEIDRGGQIFYVVPRIE 839
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+ + L P + I IAHGQ +LE +M F +++CT IVESGLDI
Sbjct: 840 GITDIATKLSNMIPKIRILIAHGQMDEGELESSMIAFNDWEADLMLCTTIVESGLDIPRV 899
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+++D QQFGL+QLYQLRGRVGR+ +AHA+L YP + ++D+A +RL A++E +LG
Sbjct: 900 NTILIEDAQQFGLSQLYQLRGRVGRSGVQAHAWLLYPSNTTINDKAKQRLQAIQEFSQLG 959
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QL+ +DM IRG G + G QQ+G + +G D++ EML E +S ++ H + V
Sbjct: 960 SGYQLSMRDMEIRGVGNLIGLQQSGQMEAIGFDMYMEMLQECISDLEGHEIPKV--DETL 1017
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWC-----LMQFTESLRRQYGKEPYS 738
ID+ IN +P +I ++N ++ A KAA C L++ + +YG P
Sbjct: 1018 IDLPINAFIPGNWI--VDNQEKI--SAYKAATD---CHTSGKLIELGLAWSDRYGALPKP 1070
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG 798
+ L++ + ++ + +G ++I + ++T M + FK++ + + +H L +G
Sbjct: 1071 VSSLMQVMQIKLVGKSLGFSRIRQIKPNIILETKMKESTFKVLRNGIDKSLHSRILYKKG 1130
Query: 799 DQIKAELLLEL---PREQLLNWIFQCLAEL 825
+ LL L P E+ L+ +F+ L+++
Sbjct: 1131 NSSSEVLLRGLANQPIEKQLDILFEWLSKM 1160
>gi|284928643|ref|YP_003421165.1| transcription-repair coupling factor [cyanobacterium UCYN-A]
gi|284809102|gb|ADB94807.1| transcription-repair coupling factor [cyanobacterium UCYN-A]
Length = 1151
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 283/640 (44%), Positives = 418/640 (65%), Gaps = 25/640 (3%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRM 207
KV+ L SGD+VVHK GIGKF+ ++ + EY+ ++Y+DG+ ++P +
Sbjct: 482 KVNLQKLNSGDHVVHKSHGIGKFLRLENLSNR------EYLVVQYSDGVLRVPADSLDNL 535
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK 267
L RY+ + T P L K++ W + K K + I+K+ +L+ LY R ++K YP
Sbjct: 536 L-RYSCTDST--PPKLHKMTGKD-WGKLKQKIRKNIKKLAFNLLHLYAERAQKKGYSYPA 591
Query: 268 NPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
+ E FPY+ TPDQ +A +V+ DL E PMDRLICGDVGFGKTEVA+RAIF
Sbjct: 592 DSLWQQELEDSFPYQATPDQVQAIREVKIDL-ESNRPMDRLICGDVGFGKTEVAIRAIFK 650
Query: 327 VVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
VV++G KQ + LAPT +L +QH++ + RF+ YP I +GLL+RF++ +EK++ ++ + G
Sbjct: 651 VVTSGHKQVVFLAPTTILTQQHYNTLRTRFAPYP-ISIGLLNRFRTTSEKKDIIERLTTG 709
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
L+I+VGT LLG + + +LGLLV+DEEQRFGV KEKI + K +VDVLTL+ATPIPRT
Sbjct: 710 ELDIVVGTQQLLGKNIKFKDLGLLVIDEEQRFGVNHKEKIRTIKANVDVLTLTATPIPRT 769
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L+++L+G R+ SLISTPPP R IKTHLS++ V +A++ ELDRGGQVFYV+PRI+ +
Sbjct: 770 LHMSLSGIREMSLISTPPPSRRSIKTHLSSYDPNLVKAAVRAELDRGGQVFYVVPRIEHI 829
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
+E + L++ P I +AHGQ LE TM F G IL+CT I+ESGLDI NT
Sbjct: 830 DELVLQLKRMIPDAKILVAHGQMDVNNLELTMLSFNNGDADILVCTTIIESGLDIPKVNT 889
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
II++D Q+FGL+QLYQLRGRVGR+ +AHA+LFYP +S L+D AL+RL AL+E ELG G
Sbjct: 890 IIIEDAQKFGLSQLYQLRGRVGRSGIQAHAWLFYPSRSELTDNALKRLNALQEFSELGSG 949
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
+ LA +D+ IRG G + G +Q+G + +G +L+ +ML E++ +V + V + QID
Sbjct: 950 YHLATRDLEIRGAGNLLGAEQSGQMEAIGFELYMDMLQEAIKEVQGEKIPEV--EDTQID 1007
Query: 686 ININPRLPSEYINHLENPM---EMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
+ + +P++YI +E + V A E D+ + +++E +YG P ++ L
Sbjct: 1008 LKLTAFIPNDYIADIEQKIIAYRTVAVASSKKELDL-IVAEWSE----RYGSIPDPVKQL 1062
Query: 743 LKKLYVRRMAADIGITKIYASGK-MVGMKTNMNKKVFKMM 781
LK + +++++ +G + I GK V +KT M + + ++
Sbjct: 1063 LKTIELKQLSKSLGFSHIKIEGKNSVVLKTPMEEPAWIIL 1102
>gi|255071025|ref|XP_002507594.1| predicted protein [Micromonas sp. RCC299]
gi|226522869|gb|ACO68852.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 570
Score = 517 bits (1331), Expect = e-143, Method: Compositional matrix adjust.
Identities = 270/571 (47%), Positives = 374/571 (65%), Gaps = 24/571 (4%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKD--------------STVPIEYVFIEYAD 194
+DP+ L G+ V+H+K GIG+F+G++ D ++ + Y+FIEYAD
Sbjct: 1 IDPFKLIPGELVIHRKFGIGRFLGVRSIAMDDCSGKECHSTKECHSASTRVGYLFIEYAD 60
Query: 195 GMAKLPVKQASRMLYRYNLPNETKR----PRTLSKLSDTTAWERRKTKGKVAIQKMVVDL 250
AK+ ++A LYR+ P K P+ LS++ D WE+R+ + I+ +V+
Sbjct: 61 ATAKIRPEKARFQLYRFASPGTIKSGVKIPK-LSRIKDRKRWEQRENIARKHIRHLVMGQ 119
Query: 251 MELYLHRLKQKRPPY--PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLI 308
M +YL RL+ R PY P F FP++ TPDQ A D DLTER+TPMDR+I
Sbjct: 120 MSIYLQRLQSVRKPYCPPSEDIYQRFNELFPHDLTPDQALAVQDCYEDLTERDTPMDRII 179
Query: 309 CGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR 368
GDVGFGKTEVA+RA+F V S G Q VLAPT VLAKQH ++ R + + L++R
Sbjct: 180 VGDVGFGKTEVAMRAVFRVFSGGGQIFVLAPTTVLAKQHAATMTARLRPF-GASIDLMTR 238
Query: 369 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-SRVVYNNLGLLVVDEEQRFGVKQKEKIAS 427
+AEK++ ++ G ++++VGTHSLL +Y+ L LLV+DEEQRFGVK K+KI+S
Sbjct: 239 NVKEAEKKDIIERWLAGRIHVLVGTHSLLNLPSTMYDPLNLLVIDEEQRFGVKHKDKISS 298
Query: 428 FKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKY 487
K SVDVLTLSATPIPRTL++A+ GFRDASL++TPPPER PI T L + + V AI+Y
Sbjct: 299 LKSSVDVLTLSATPIPRTLHMAMAGFRDASLVTTPPPERRPIITRLQVYEQSVVHQAIQY 358
Query: 488 ELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKI 547
EL RGGQ+FYV+PRI+ + L++ F + I HGQ L+ M++FA G I
Sbjct: 359 ELGRGGQIFYVVPRIQMMNAAKKRLKEIFQDIIILEVHGQMKGEYLDHAMDEFASGRAHI 418
Query: 548 LICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSD 607
L+CT IVESGLDI N NTIIV++VQQFGLA LYQLRGRVGRA ++A+AY+F+ ++ + +
Sbjct: 419 LLCTTIVESGLDIPNVNTIIVEEVQQFGLASLYQLRGRVGRAGRQAYAYMFHAERGGMHN 478
Query: 608 QALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS 667
A ERL ALEEC LG+GF+LAE+DM IRG GT+FGE+Q+G++ ++G DL+ E L+E L
Sbjct: 479 DAQERLLALEECCGLGEGFRLAERDMAIRGVGTLFGEKQSGEMDSIGADLYLEFLYEQLE 538
Query: 668 KVDEHCVISVPYKSVQIDI-NINPRLPSEYI 697
K++ + + V + + P+L EY+
Sbjct: 539 KIEMLSLNPITPSEVHVPVFPTVPKLTREYV 569
>gi|412985535|emb|CCO18981.1| transcription-repair coupling factor [Bathycoccus prasinos]
Length = 1143
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 272/549 (49%), Positives = 375/549 (68%), Gaps = 18/549 (3%)
Query: 138 GYNGA--GGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIE------YVF 189
GYN + G + +DP+ L G+YVVH+K GIGKF+G++ +D ++F
Sbjct: 398 GYNDSTHGLANNSIDPFKLVIGEYVVHRKYGIGKFLGMRSINHEDEETGRNEGTRKVFLF 457
Query: 190 IEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTT-AWERRKTKGKVAIQKMVV 248
I++AD AK+ K+AS LYRY P +P LSKL D +WE ++ + + I+ +VV
Sbjct: 458 IQFADDTAKIEPKKASMQLYRYASPGAQVKPPRLSKLYDKLGSWEAKEAQMQKQIRDLVV 517
Query: 249 DLMELYLHRLKQKRPPY--PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDR 306
M +YL RL+ R PY K A+FA F +E TPDQK A D+ D+T R+TPMDR
Sbjct: 518 HQMCVYLQRLQCVRAPYRISKPDEEAKFAEGFRFELTPDQKMAIEDINEDMT-RDTPMDR 576
Query: 307 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLL 366
+I GDVGFGKTEVA RAI +GK + +LAPT VLAKQH V+ RF ++ ++V LL
Sbjct: 577 IIVGDVGFGKTEVAFRAISRACFSGKNSFILAPTTVLAKQHAANVAARF-RHLGVEVNLL 635
Query: 367 SR-FQSKAEKE--EHLDMIKHGHLNIIVGTHSLLG-SRVVYNNLGLLVVDEEQRFGVKQK 422
+R ++K +KE E G IIVGTH LL S VY+NL LL++DEEQRFGV+ K
Sbjct: 636 TRHVKTKDQKEILEKFSQKDSGRAQIIVGTHGLLNLSTEVYDNLDLLIIDEEQRFGVRHK 695
Query: 423 EKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVI 482
++I++ K +VDVLTLSATPIPRTL++A++GFRDASL+ TPPPER PI+T+L ++K+
Sbjct: 696 DQISALKATVDVLTLSATPIPRTLHMAISGFRDASLVQTPPPERRPIRTNLLPMDEDKIR 755
Query: 483 SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQ 542
AI+YE++RGGQ++Y++PRI + + L P + + AHGQ L+ M++F+
Sbjct: 756 EAIEYEINRGGQIYYIVPRIMMMGDSRQRLFGILPNLRVIEAHGQMDGDTLDAVMDEFSN 815
Query: 543 GAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP-D 601
G +L+CT IVESGLDI N NTII+++VQ FGLA LYQLRGRVGRAD++AHA++FY D
Sbjct: 816 GEADVLLCTTIVESGLDIPNCNTIIIEEVQSFGLASLYQLRGRVGRADRQAHAWMFYGLD 875
Query: 602 KSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEM 661
L+++A ERL ALEE LG+GF+LAE+DM IRG GT+FGE+Q+G+V +VG DL+ E+
Sbjct: 876 PESLNEKAKERLLALEESCGLGEGFKLAERDMSIRGVGTLFGEKQSGEVDSVGADLYLEL 935
Query: 662 LFESLSKVD 670
L+ L +V+
Sbjct: 936 LYSQLQRVE 944
>gi|443474467|ref|ZP_21064443.1| transcription-repair coupling factor [Pseudanabaena biceps PCC 7429]
gi|443020826|gb|ELS34742.1| transcription-repair coupling factor [Pseudanabaena biceps PCC 7429]
Length = 1113
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 286/683 (41%), Positives = 424/683 (62%), Gaps = 24/683 (3%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS-RM 207
V+P L GDYVVH+K GIGKF + K P + +E+ADG + + Q + ++
Sbjct: 441 VNPDELNVGDYVVHRKYGIGKFTRFETIEVKGEKQP--HYIVEFADGKTAVAIAQENEKI 498
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK 267
L RY + + +P L+ +++T AW+ +K + I K+ DL++LY+ R +P
Sbjct: 499 LSRYR--SASNKPPKLNSIANTKAWDNALSKCQKEIYKLARDLLQLYVRRANLVGYAFPP 556
Query: 268 NPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
+ E FPY+ TPDQ KA DV++D+ E + PMDRL+CGDVGFGKTEVA+RAIF
Sbjct: 557 DTDWQQEMEDSFPYQLTPDQVKAVQDVKQDM-ESDRPMDRLVCGDVGFGKTEVAVRAIFK 615
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
+ AGKQ +LAPT +LA+QHF + RF+ YP V +++RF+ E+++ L + G
Sbjct: 616 AICAGKQVALLAPTTILAQQHFHTLQTRFAAYP-FTVEIVNRFRPAKERKQVLQHVADGK 674
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
+ +IVGTH LL V +++LGLLV+DEEQRFG QKEKI + K VD+LTLSATPIPRTL
Sbjct: 675 VQVIVGTHQLLSKDVEFHDLGLLVIDEEQRFGTLQKEKIKAMKGDVDLLTLSATPIPRTL 734
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
Y AL+G R+ S+I+TPPP R I+THLSA+ V +AI++ELDRGGQVFYV+PRI+G+E
Sbjct: 735 YAALSGVREMSVIATPPPSRRSIQTHLSAYDASLVKTAIRHELDRGGQVFYVVPRIEGIE 794
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
D L+ P V +AIAHGQ +LE M F IL+CT I+ESGLDI NTI
Sbjct: 795 AIADSLRLMLPNVRLAIAHGQMQESELEAAMVAFNNNEADILLCTTIIESGLDIPRVNTI 854
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
+++D + GLAQLYQLRGRVGRA +AHAYL YP L+D A +RL A++E +LG G+
Sbjct: 855 VIEDAHKLGLAQLYQLRGRVGRAGIQAHAYLLYPPNLELTDAAKKRLDAIQEFSQLGSGY 914
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 686
QLA +DM IRG G + GE+Q+G +G L+ ++L E ++++ + V +Q+
Sbjct: 915 QLAMRDMEIRGLGDLLGEEQSGQADVIGFALYMDLLQEYINELRGKILPEVADTELQL-- 972
Query: 687 NINPRL----PSEYINHLENPMEM-VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
PRL P YI E + + A+ ++++I L E L YG P ++
Sbjct: 973 ---PRLVAFIPDSYIEDNETKINAYLTLAKVKSKEEILKLAAVWEGL---YGALPEETQV 1026
Query: 742 LLKKLYVRRMAADIGITKIYAS--GKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGD 799
LL+ + ++ +A +G+ +IY+S G+ + + + + +++++ + E + +FE
Sbjct: 1027 LLRVMELKLVARQVGVFRIYSSEDGRDLFLDSKLTDSLWELLHAKIPIEFYYR-FSFEKG 1085
Query: 800 QIKAELLLELPREQLLNWIFQCL 822
+IK L LP ++ ++++ + L
Sbjct: 1086 RIKITSLALLPGDKQVHFLIEWL 1108
>gi|308803831|ref|XP_003079228.1| putative helicase (ISS) [Ostreococcus tauri]
gi|116057683|emb|CAL53886.1| putative helicase (ISS) [Ostreococcus tauri]
Length = 905
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 291/714 (40%), Positives = 434/714 (60%), Gaps = 50/714 (7%)
Query: 144 GFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKF---DVQKDSTVPIEYVFIEYADGMAKLP 200
G S +DP+ L +G++VVH+K GIG+++G+K D T ++F++Y D AK+
Sbjct: 219 GVSNSIDPFKLVAGEFVVHRKYGIGQYLGLKVLPVDQPNGDTKNKPFLFLKYQDATAKIS 278
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
+ + R+LYR+ P +P L+KL D+T W+ R+ K + I+++VV+ M +YL RL+
Sbjct: 279 PEASRRLLYRFCSPGALVKPPKLNKLKDSTTWDLREKKTEATIRRLVVNQMVIYLQRLQT 338
Query: 261 KRPPYPKNPA--IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTE 318
R PY PA + F FPY+ TPDQ +A D+ DL+ R+ PMDRL+ GDVGFGKTE
Sbjct: 339 IRNPYELPPAESVEAFDKSFPYKLTPDQVRAVEDITIDLS-RDAPMDRLVIGDVGFGKTE 397
Query: 319 VALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378
VA+RAIF V S+G ++APT VLAKQH ++ RF I V L++R K+ E
Sbjct: 398 VAMRAIFHVASSGGGVFMMAPTTVLAKQHAANLAARFRPL-GINVELVTRHVVKSRHTEI 456
Query: 379 LDMIKHGHLNIIVGTHSLLG-SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTL 437
+ K G + IIVGTH L+ Y L LLV+DEEQRFGVK K++I++ K VDVLTL
Sbjct: 457 FEKFKEGTVQIIVGTHKLVNLDSEYYRKLKLLVIDEEQRFGVKHKDQISALKAEVDVLTL 516
Query: 438 SATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFY 497
SATPIPRTL++A++GFRDASL+ TPPPER PI T L+ + + AI++EL+R GQV+Y
Sbjct: 517 SATPIPRTLHMAMSGFRDASLVQTPPPERRPINTILAPQNDADITRAIEHELNRNGQVYY 576
Query: 498 VLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 557
++PR+ ++E + L + FP + I HGQ Q+++ ME F+ G +LI T IVESG
Sbjct: 577 IVPRVSMMKEASERLNRLFPELRIMTCHGQMDGDQIDDAMEAFSSGTADVLIATTIVESG 636
Query: 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAAL 616
LDI N NTII+++ LRGRVGRA ++A+AY+FY D+S L+ A ERLAAL
Sbjct: 637 LDIPNCNTIIIEN-----------LRGRVGRAGRQAYAYMFYSSDESELTPAAQERLAAL 685
Query: 617 EECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS 676
EEC LG+GF+L+E+DMGIRG GT+FGE+Q+GDV NVG DL+ E+L++ L ++D + +
Sbjct: 686 EECCGLGEGFRLSERDMGIRGVGTMFGEKQSGDVDNVGADLYLELLYKQLQRIDNLRIKT 745
Query: 677 VPYKSVQI-----DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWC---LMQFTESL 728
+ V++ + I P YI + N+ KAA I + + L
Sbjct: 746 IAASDVRVETAGYEFGITPF----YIATTQ-----ANDEVKAAIDSITVHEHIHAMLKLL 796
Query: 729 RRQYGKEPYSMEILLKKLYVRRM---AADIGITKIY----ASGKMVGMKTNMNKKVFKMM 781
+ +G EP E L L+ R M A D+GI I ++ + T+ + V +++
Sbjct: 797 QDTFG-EPD--EFSLSCLFAREMQILAGDLGIKAILLDYPKDPPIIDLITDASLMVKELL 853
Query: 782 IDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIKY 835
++ T+ + + G I+ + + ++ + ++ L ++ +S+P+ +KY
Sbjct: 854 VEG-TNGAYDVKIMDNG--IRFKTMTDMTMHGKVMYVVSILRQITSSIPSFVKY 904
>gi|123966148|ref|YP_001011229.1| transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9515]
gi|123200514|gb|ABM72122.1| Transcriptional-repair coupling factor [Prochlorococcus marinus str.
MIT 9515]
Length = 1175
Score = 507 bits (1305), Expect = e-140, Method: Compositional matrix adjust.
Identities = 274/654 (41%), Positives = 417/654 (63%), Gaps = 21/654 (3%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASR 206
K++P GDY+VHK GIG+F+ + K ++ +S +Y+ I+Y DG + Q
Sbjct: 491 KINP-----GDYIVHKNHGIGQFLKLEKINITGESR---DYLVIKYLDGKISVAADQLGS 542
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP 266
+ RY + P+ ++KL W + K K + I+K+ D+++LY R K K YP
Sbjct: 543 -INRYRSTGKI-MPK-INKLGGA-EWLKIKDKNRKIIKKVAYDILKLYAKREKLKGHIYP 598
Query: 267 KN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
++ P E FPY+PTPDQ A +++ D+ E + PMDRL+CGDVGFGKTEVA+RAIF
Sbjct: 599 EDGPWQKELEESFPYQPTPDQLTAVKEIKIDM-ESDKPMDRLVCGDVGFGKTEVAVRAIF 657
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
+++GKQ ++LAPT +LA+QH+ + RFS YP IKV LL+RF++ +EK++ +K+
Sbjct: 658 KAITSGKQVILLAPTTILAQQHWRTFNNRFSPYP-IKVSLLNRFKTSSEKKDIYAGLKNN 716
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++++V TH +LG + NLGLLV+DEEQRFGV+QKEKI + K ++DVLTLSATPIPRT
Sbjct: 717 KIDLVVATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKNIKTNIDVLTLSATPIPRT 776
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
LY++L+G R SL++TPPP R IKT+LS + + +AI ELDRGGQ+FYVLPRI +
Sbjct: 777 LYMSLSGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAISQELDRGGQIFYVLPRISDI 836
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
++ ++ L F + +AHGQ LE M F G + ++ICT I+ESGLDI NT
Sbjct: 837 DQAVNKLTNMFNDLKFIVAHGQMNEIDLENAMIAFNNGEVDLMICTTIIESGLDIPKVNT 896
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
II++D +FGL+QLYQLRGRVGR+ +AHA+LFYP+ + +++ + +RL A+++ ELG G
Sbjct: 897 IIIEDSHKFGLSQLYQLRGRVGRSGIQAHAWLFYPNLNNINEASKQRLKAIKDFSELGSG 956
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
+QLA KDM IRG G++ GE+Q+G V +G DL+ EML E++S+++ + V K Q+D
Sbjct: 957 YQLAMKDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEINGQEIPEV--KDTQVD 1014
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ IN +P+ +I + E ++ EA + L + +YG P +E L+
Sbjct: 1015 LPINAFIPATWILNREEKLDAYKEATECNTHK--ELTELATDWSNRYGVLPKPVESLILL 1072
Query: 746 LYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGD 799
+ ++ +A G KI + ++T + FK++ ++ + + +N +FE D
Sbjct: 1073 MKLKLLAKKCGFNKIKLKKPNIIIETRLKISTFKLIKKALPTNI-QNKFSFEED 1125
>gi|33861396|ref|NP_892957.1| transcriptional-repair coupling factor [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
gi|33633973|emb|CAE19298.1| Transcriptional-repair coupling factor [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
Length = 1171
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 281/680 (41%), Positives = 420/680 (61%), Gaps = 20/680 (2%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASR 206
K++P GDY+VHK GIG+F+ I K ++ +S +Y+ I Y DG + Q
Sbjct: 491 KINP-----GDYIVHKNHGIGQFLKIEKINITGESR---DYLVIRYLDGKISVAADQLGS 542
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP 266
+ RY + K PR ++KL T W + K K + I+K+ +D+++LY R K K +P
Sbjct: 543 -INRYRSSGKIK-PR-INKLGGT-EWLKIKDKNRKIIKKVALDILKLYAKREKLKGHIFP 598
Query: 267 KN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
++ P E FPY+ TPDQ A +V+ D+ E + PMDRL+CGDVGFGKTEVA+RAIF
Sbjct: 599 EDGPWQKELEESFPYQATPDQITAVKEVKIDM-ESDKPMDRLVCGDVGFGKTEVAVRAIF 657
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
+++GKQ ++LAPT +LA+QH+ RFS YP IKV LL+RF++ EK++ + +K+
Sbjct: 658 KAITSGKQVILLAPTTILAQQHWRTFYNRFSPYP-IKVSLLNRFKTNTEKKDIYNGLKNN 716
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++++V TH +LG + NLGLLV+DEEQRFGV+QKEKI + K ++DVLTLSATPIPRT
Sbjct: 717 KIDLVVATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKNIKTNIDVLTLSATPIPRT 776
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
LY++L+G R SL++TPPP R IKT+LS + + +AI ELDRGGQ+FYVLPRI +
Sbjct: 777 LYMSLSGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAISQELDRGGQIFYVLPRISDI 836
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
++ ++ L+ F + +AHGQ LE M F G + ++ICT I+ESGLDI NT
Sbjct: 837 DQAVNKLKNMFKDLKYIVAHGQMNEIDLENAMIAFNNGEVDLMICTTIIESGLDIPRVNT 896
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
I+++D +FGL+QLYQLRGRVGR+ +AHA+LFYP+ + +++ + +RL A+++ ELG G
Sbjct: 897 IVIEDSHKFGLSQLYQLRGRVGRSGIQAHAWLFYPNINKINEASKQRLKAIKDFSELGSG 956
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
+QLA KDM IRG G++ GE+Q+G V +G DL+ EML E++S+++ V V Q+D
Sbjct: 957 YQLAMKDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEINGQEVPEV--NDTQVD 1014
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ IN +P +I + E ++ A + L + +YG P +E L+
Sbjct: 1015 LPINAFIPGTWILNREEKLDAYKYATECTNHK--ELTELATDWTNRYGVLPKPVESLILL 1072
Query: 746 LYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL 805
+ ++ +A G KI V ++T + FK++ + S + E DQ +
Sbjct: 1073 MKLKLLAKKCGFNKIKLKKPNVIIETRLKNSTFKLIKKGLPSNIQSKFNYEEDDQFSKII 1132
Query: 806 LLELPREQLLNWIFQCLAEL 825
+ L + N I Q + L
Sbjct: 1133 IRGLGVTDIQNQIDQLIYWL 1152
>gi|443479089|ref|ZP_21068745.1| transcription-repair coupling factor [Pseudanabaena biceps PCC 7429]
gi|443015494|gb|ELS30419.1| transcription-repair coupling factor [Pseudanabaena biceps PCC 7429]
Length = 1033
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 269/603 (44%), Positives = 378/603 (62%), Gaps = 21/603 (3%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS-RM 207
V+P + GDYVVH+K GIGKF + K P + +E+ADG + + Q + ++
Sbjct: 440 VNPDEINVGDYVVHRKYGIGKFTRFETIEVKGEKQP--HYIVEFADGKTAVAIAQENEKI 497
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK 267
L RY + + +P L+ +++T AW+ K + I K+ DL++LY+ R +P
Sbjct: 498 LSRYR--SASNKPPKLNSIANTKAWDNALGKCQKEIYKLARDLLQLYVRRANLVGYAFPP 555
Query: 268 NPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
+ E FPY+ TPDQ KA DV++D+ E + PMDRL+CGDVGFGKTEVA+RAIF
Sbjct: 556 DTDWQQEMEDSFPYQLTPDQVKAVQDVKQDM-ESDRPMDRLVCGDVGFGKTEVAVRAIFK 614
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
V AGKQ +LAPT +LA+QHF + RF+ YP V +++RF+ E+++ L + G
Sbjct: 615 AVCAGKQVALLAPTTILAQQHFHTLQTRFAAYP-FTVEIVNRFRPAKERKQVLQQVADGK 673
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
+ +IVGTH LL V +++LGLLV+DEEQRFG QKEKI + K VD+LTLSATPIPRTL
Sbjct: 674 VQVIVGTHQLLSKDVEFHDLGLLVIDEEQRFGTLQKEKIKTMKGDVDLLTLSATPIPRTL 733
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
Y AL+G R+ S+I+TPPP R I+THL A+ V +AI++ELDRGGQVFYV+PRI+G++
Sbjct: 734 YAALSGVREMSVIATPPPSRRSIQTHLFAYDASLVKTAIRHELDRGGQVFYVVPRIEGID 793
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
LQ P V +AIAHGQ +LE M F IL+CT I+ESGLDI NTI
Sbjct: 794 AIAVSLQAMLPNVRLAIAHGQMQESELESAMVAFNNNEADILLCTTIIESGLDIPRVNTI 853
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
+++D + GLAQLYQLRGRVGRA +AHAYL YP L+D A +RL A++E +LG G+
Sbjct: 854 VIEDAHKLGLAQLYQLRGRVGRAGIQAHAYLLYPPNLELTDAAKKRLDAIQEFSQLGSGY 913
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 686
QLA +DM IRG G + GE+Q+G +G L+ ++L E ++++ + V +Q+
Sbjct: 914 QLAMRDMEIRGLGDLLGEEQSGQADVIGFALYMDLLQEYINELRGKILPEVADTELQL-- 971
Query: 687 NINPRL----PSEYINHLENPMEM-VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
PRL P YI E + + A+ ++++I L E+L YG P ++
Sbjct: 972 ---PRLVAFIPDTYIEDNETKINAYLTLAKVKSKEEILKLAAIWENL---YGALPEETQV 1025
Query: 742 LLK 744
LL+
Sbjct: 1026 LLR 1028
>gi|339626513|ref|YP_004718156.1| transcription-repair coupling factor [Sulfobacillus acidophilus TPY]
gi|379005970|ref|YP_005255421.1| transcription-repair coupling factor [Sulfobacillus acidophilus DSM
10332]
gi|339284302|gb|AEJ38413.1| transcription-repair coupling factor [Sulfobacillus acidophilus TPY]
gi|361052232|gb|AEW03749.1| transcription-repair coupling factor [Sulfobacillus acidophilus DSM
10332]
Length = 1172
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 274/661 (41%), Positives = 406/661 (61%), Gaps = 20/661 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH GIG+F+G++ D+Q +Y+ I+YA +PV Q L +
Sbjct: 495 LKPGDYVVHMTHGIGRFLGVRTLDIQGQHK---DYLHIQYAGADTLYVPVDQLG--LVQK 549
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
+ E + PR LSK+ W R K K K ++++M +L++LY R + Y P P
Sbjct: 550 YVGVEGQEPR-LSKMGGQE-WTRTKEKVKASVREMAEELLKLYAKREAEPGIAYGPDTPW 607
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
AEF A FPYE TPDQ +A D++RD+ ER PMDRL+CGDVG+GKTEVALRA F +
Sbjct: 608 QAEFEAAFPYEETPDQLRAIDDIKRDM-ERARPMDRLLCGDVGYGKTEVALRAAFKAIMG 666
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH+ R + YP + V +LSRF++ +++E L +K G ++++
Sbjct: 667 GKQVAFLVPTTLLAEQHYQTAKSRLAGYP-VTVEVLSRFRTPKQQKEILARVKKGQVDLL 725
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
VGTH LL V + +LGLL+VDEE RFGV KE+I + K +VDVLTL+ATPIPRTL++AL
Sbjct: 726 VGTHRLLAKDVQFQDLGLLIVDEEHRFGVAHKERIKALKGNVDVLTLTATPIPRTLHMAL 785
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+I TPP +RLP++T ++ + ++ V AI+ ELDRGGQVFYV RI+ ++ ++
Sbjct: 786 VGIRDMSVIETPPEDRLPVETVVAEYDEDLVREAIRRELDRGGQVFYVQNRIRSMDRTVE 845
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L + FPG+ +A+ HGQ ++E+ M +F + IL+ TNI+ESGLDI NANT+IV+D
Sbjct: 846 HLMKLFPGIRLAVVHGQMEENRIEDVMARFIEQEYDILVTTNIIESGLDIPNANTLIVED 905
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYL-FYPDKSLLSDQALERLAALEECRELGQGFQLA 629
+ GLAQLYQLRGRVGR+ + A+AY F+PDK +L+ A +RL A+ E ELG G+Q+A
Sbjct: 906 ADKMGLAQLYQLRGRVGRSSRLAYAYFTFHPDK-VLTPAAEKRLEAIREFTELGAGYQIA 964
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G + G +Q G + VG DL+ +ML +++ ++ V P I+I ++
Sbjct: 965 LRDLEIRGAGNLLGAEQHGFIATVGFDLYTQMLAQAVQELKGEPV-ETPVDPT-IEIAVD 1022
Query: 690 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
LP +Y+ +EM A + + + E + ++G P S+ L++ VR
Sbjct: 1023 AYLPDDYVPDPRQKIEMYKRLVSA--KSLAEVEALAEEIEDRFGTAPASVTALVQLSRVR 1080
Query: 750 RMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLEL 809
+A D+ +T++ G + + + +V I + S G Q EL ++L
Sbjct: 1081 VLARDVRLTQVSHKGDRILLGGGPDSRVGPEAIQRLASRF--PGRLIPGTQRAPELGIKL 1138
Query: 810 P 810
P
Sbjct: 1139 P 1139
>gi|257457388|ref|ZP_05622559.1| transcription-repair coupling factor [Treponema vincentii ATCC 35580]
gi|257445310|gb|EEV20382.1| transcription-repair coupling factor [Treponema vincentii ATCC 35580]
Length = 1154
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 269/638 (42%), Positives = 393/638 (61%), Gaps = 25/638 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIE--YVFIEYA-DGMAKLPVKQASRMLYR 210
L GDYVVH GIG+F GI ++ T+ E Y+ + YA D +P++QA+ ++ R
Sbjct: 491 LNPGDYVVHVNYGIGQFKGI----ERVKTLGHERDYINLLYAQDETVFIPIEQAN-LVQR 545
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNP 269
Y + NE + PR + + AWE RK K K +++ + L++LY R + N
Sbjct: 546 Y-IGNEGEAPRL--DIIGSKAWENRKNKVKKSVEDIADKLIDLYSRRKAAAGFAFAKDNE 602
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
F A FPYE T DQ DV+ D+ E+ PMDRLICGDVG+GKTE+A+RA F V
Sbjct: 603 WQTAFEAAFPYEETEDQLTCIADVKTDM-EKPVPMDRLICGDVGYGKTEIAMRAAFKAVM 661
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQA LAPT +LA+QHF+ ERF K+P +K+ LSRF SKAE+++ LD +K+G L+I
Sbjct: 662 NGKQAAFLAPTTILAEQHFETFQERFQKFP-VKLARLSRFVSKAEQKKVLDQLKNGELDI 720
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH ++ V + +LGL++VDEEQRFGVK KE++ K ++D L+LSATPIPRTL+++
Sbjct: 721 VIGTHRVIQKDVQFKDLGLMIVDEEQRFGVKDKERLKQMKTNIDCLSLSATPIPRTLHIS 780
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
L RD SL++TPP R P++T +S F EK+ AI++E+DRGGQVFY+ R++ LEE
Sbjct: 781 LLKIRDMSLLTTPPQNRRPVETVISPFDPEKIAQAIRFEVDRGGQVFYLHNRVESLEETR 840
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+QQ P V I IAHGQ + +LE+ +F G +LI T I+E+G+DI NANTII+
Sbjct: 841 YKIQQLIPEVLIDIAHGQMSATELEDIFRRFNMGGFHVLIATTIIENGIDIPNANTIIID 900
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
+G++QLYQLRGRVGR+D++A+AYL YP+ LS+ A++RL + + ELG GF++A
Sbjct: 901 RADMYGVSQLYQLRGRVGRSDRKAYAYLLYPENKALSEVAMKRLQVISDFTELGSGFKIA 960
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
KDM IRG G + G++Q+GD+ +VG DL+ +L E++ ++ P I++
Sbjct: 961 MKDMEIRGAGNLLGKEQSGDIYSVGFDLYLRLLEEAVERLQNAGY--EPETEPVIELEYT 1018
Query: 690 PRLPSEYINHLENPMEMVNE--AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
+P YI E ME+ + A + AE+ L + L ++G P E LL
Sbjct: 1019 GFIPDSYIRVPETKMEIYKKIAAVRTAEE----LDRLYAELSDRFGPVPEEAESLLSLAE 1074
Query: 748 VRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSM 785
++ + A + I + V + KV K+ ID +
Sbjct: 1075 IKIICAKLAIASLKERNGTVRITF---AKVSKISIDKL 1109
>gi|189485430|ref|YP_001956371.1| transcription-repair coupling factor Mfd [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287389|dbj|BAG13910.1| transcription-repair coupling factor Mfd [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 1048
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 262/641 (40%), Positives = 393/641 (61%), Gaps = 11/641 (1%)
Query: 152 YSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
+ + +GDYVVH+K GIG+++G+K + +++++ EY+ IEY +G + + + +Y
Sbjct: 378 WEILAGDYVVHEKYGIGRYIGLK-TISRENSIS-EYLCIEYKNGDKLYIPPEQIKTIKKY 435
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
+ E +P+ S DT AWER K++ + A K +L++LY+ R KR P+ P
Sbjct: 436 -IGVEGVKPKLYS--MDTLAWERVKSRAREAAAKFAEELLKLYVQRSLIKRKPFGPGTAW 492
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E FPY+ TP Q KA D++ D + PM+RL+CGDVG+GKTEV +RA F V
Sbjct: 493 EKELENTFPYDETPGQLKAIEDIKNDFL-KPYPMERLVCGDVGYGKTEVVVRAAFKAVHE 551
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
Q +L PT VLA+QH++ +R S +P IKV +LSRFQ+KA+++E +++G ++II
Sbjct: 552 SMQTAILVPTTVLAQQHYNTFCDRLSPFP-IKVAVLSRFQTKAKQKEITQDLENGLIDII 610
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH LL V + NLGLLV+DEE RFGVKQKEKI S K ++D+L LSATPIPRTL +L
Sbjct: 611 IGTHRLLQKDVKFKNLGLLVIDEEHRFGVKQKEKIKSMKKNIDILMLSATPIPRTLSSSL 670
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
+GFRD S+I TPP RLPI+T +S + + + + I+ EL R GQVFYV +I+ +
Sbjct: 671 SGFRDLSVIETPPFGRLPIETSISLYDENLIKNIIEAELSRNGQVFYVYNKIETILTKAA 730
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+++ PG+ + I +GQ ++ +EE M KF + +L+ T I+ESGLDI + NT+I+++
Sbjct: 731 SIRELVPGIKLGIIYGQMKAKDIEEIMWKFINMELDVLLATTIIESGLDIPSVNTMIIEE 790
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
V+ FGL+QLYQLRGR+GR K+A+ YLFY DK+ LSD+A++RL A+ E ELG GF+LA
Sbjct: 791 VENFGLSQLYQLRGRIGRDRKKAYCYLFYKDKT-LSDEAVKRLEAIREFGELGSGFRLAL 849
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
KD+ IRG G I Q G V ++G D+F ++L E KV V S K+ ID+ IN
Sbjct: 850 KDLEIRGAGGILSSSQHGFVRDIGYDMFAKLLEEEGKKVKGDAVESQEKKNTVIDLQINA 909
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+P YI + + + A Q+I + L ++GK P ++L + +R
Sbjct: 910 LIPPTYIEGEDIRILFYRKLSNA--QNIKAIENIKNELLDRFGKIPNETQMLFEITNLRL 967
Query: 751 MAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHR 791
A + I +I + + + K I +T++ R
Sbjct: 968 TAEKLDIERIAEDNNYIYLYFSRKADFSKADITKLTNDYSR 1008
>gi|374307673|ref|YP_005054104.1| transcription-repair coupling factor [Filifactor alocis ATCC 35896]
gi|291166313|gb|EFE28359.1| transcription-repair coupling factor [Filifactor alocis ATCC 35896]
Length = 1124
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 259/636 (40%), Positives = 394/636 (61%), Gaps = 29/636 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK---FD-VQKDSTVPIEYVFIEYADGMA-KLPVKQASRML 208
L+ GDYVVH+ G+G+F+ I+ FD ++KD Y+ I Y G + +P++Q ++
Sbjct: 485 LKKGDYVVHETYGVGQFIEIEQREFDGIKKD------YIKIAYFGGDSLYVPLEQMDKV- 537
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
+ + N ++ LSKL ++ W++ K + K A++ + DL+ELY R +K + ++
Sbjct: 538 -QSFIGNSAEQAYKLSKLG-SSDWKKSKARTKKAVEAIAQDLVELYAVRENEKGYSFQED 595
Query: 269 PAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
EF FPYE T DQ KA +V+RD+ E MDRL+CGDVG+GKTEVA+RAIF
Sbjct: 596 TVWQREFEDAFPYEETDDQLKAIEEVKRDM-ESSRVMDRLLCGDVGYGKTEVAIRAIFKA 654
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
GKQ + L PT +LA+QH+ + ERF YP ++V L+SRF++ E E D + G +
Sbjct: 655 CMDGKQVVFLVPTTILAQQHYVTIKERFLNYP-LRVDLVSRFKTTKEVNETFDSLAKGSV 713
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
++++GTH +L ++ Y NLGL+VVDEEQRFGVKQKE I ++++D LTLSATPIPRTL+
Sbjct: 714 DVVIGTHKILSEKIKYKNLGLIVVDEEQRFGVKQKEAIKKMRMNIDCLTLSATPIPRTLH 773
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
L+L+G R+ S+++ PP +R PI T+++ + AI EL RGGQVF+V R++ +++
Sbjct: 774 LSLSGIREMSILNEPPQDRHPIVTYVTEAKSNIIADAIDRELARGGQVFFVYNRVETIDK 833
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
L++ P DIA+AHGQ SR+LE+ M F +L+CT I+E+G+DI NANT+I
Sbjct: 834 IHTLLKELVPDADIAVAHGQMPSRKLEQIMVDFLNREYDVLVCTTIIETGMDISNANTMI 893
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
V D + GL+QLYQLRGRVGR+ K+ +AY Y + +L++ A +RL + E E G GF+
Sbjct: 894 VYDADKMGLSQLYQLRGRVGRSSKQGYAYFMYEKEKVLTEIAEKRLKTIREFTEFGSGFK 953
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDIN 687
+A KD+ IRG G + GE Q+G + N+G DL+ ML E++ K + V +I +
Sbjct: 954 VAMKDLEIRGAGNLLGESQSGHIANIGYDLYVRMLDEAIKKYKGE--LPVTDVETEIQLK 1011
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAA----EQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+N +P+ Y+ E+ +E ++ +K A ++D LM + L ++G+ P S+ LL
Sbjct: 1012 LNGYIPNYYV---EDEIEKIDIYKKIAMIDKKEDYEDLM---DELCDRFGEIPISVVTLL 1065
Query: 744 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFK 779
Y+R + +TKIY MV NK + K
Sbjct: 1066 DVSYLRALGKKGKVTKIYQKNFMVYFVGKDNKLITK 1101
>gi|302876604|ref|YP_003845237.1| transcription-repair coupling factor [Clostridium cellulovorans 743B]
gi|307687278|ref|ZP_07629724.1| transcription-repair coupling factor [Clostridium cellulovorans 743B]
gi|302579461|gb|ADL53473.1| transcription-repair coupling factor [Clostridium cellulovorans 743B]
Length = 1173
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 261/669 (39%), Positives = 423/669 (63%), Gaps = 21/669 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH GIG + GIK +V+ V +Y+ + Y+DG +PV+Q ++ +Y
Sbjct: 505 LKPGDYVVHANHGIGVYKGIKQLEVE---NVKKDYLMVSYSDGDTLYVPVEQLD-LIQKY 560
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E K P+ ++KL + W++ KTK + +I ++ DL++LY R K + K+
Sbjct: 561 -IGSEGKAPK-ITKLGGS-EWQKAKTKARNSINEIAQDLVKLYATREAVKGYSFSKDTTW 617
Query: 272 AE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+ F A+FPYE TPDQ A +++ D+ E+ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 618 QQQFEAEFPYEETPDQISAIEEIKVDM-EKNKPMDRLLCGDVGYGKTEVAMRAAFKAVMD 676
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQA L PT +LA+QH+ + +RF+ +P + + ++SRF+S +++E L +K G+++II
Sbjct: 677 GKQAAFLVPTTILAEQHYKTLKKRFTGFP-VNIDMISRFRSATQQKETLKSLKEGNVDII 735
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH +LG V + +LGLL+VDEEQRFGV KEKI + K ++DVLTLSATPIPRTL ++L
Sbjct: 736 IGTHKILGKTVQFKDLGLLIVDEEQRFGVSHKEKIKNAKKNIDVLTLSATPIPRTLNMSL 795
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG R S+I TPP ER P++T++ ++ + + A+ E++R GQVF+V R++ + E D
Sbjct: 796 TGVRSISVIETPPEERYPVQTYVVEYNDQLIRDAVLREINRKGQVFFVFNRVENIREIAD 855
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L P I +AHGQ ++LEE M F IL+ T I+E+G+DIQNANT+I+ D
Sbjct: 856 SLAHLIPEARIIVAHGQMAEKELEEVMRAFMNQEYDILVSTTIIETGIDIQNANTMIIYD 915
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR ++ A+AYL Y ++++ A +RL A+++ ELG GF++A
Sbjct: 916 ADKMGLSQLYQLRGRVGRTNRIAYAYLTYRKDKIITEVAKKRLKAIKDFTELGSGFKVAL 975
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G Q G + +G DL+ +ML E KV + + P ++V I++ +N
Sbjct: 976 RDLEIRGAGNVMGSAQHGQMAAIGYDLYCKML-EDTIKVIKGEIDKEPIETV-IEMKVNA 1033
Query: 691 RLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+P+ YI+ +E+ + A ++D L+ T+ L ++ P S+ L++ Y+R
Sbjct: 1034 FIPNGYISDETQKIEVYKKIASIETKKD---LLDITDELIDRFSDLPPSVNNLMEISYIR 1090
Query: 750 RMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL--LL 807
+A ++GI ++ K + + K+ K M++++ + ++ + F+ ++ + L
Sbjct: 1091 ALAKNLGIIEVKDKIKEIHLIFENKDKITKEMVNAIIDKYSKH-IMFKQEETPTMIFQLK 1149
Query: 808 ELPREQLLN 816
++ RE++LN
Sbjct: 1150 DIKREEILN 1158
>gi|339500234|ref|YP_004698269.1| transcription-repair coupling factor [Spirochaeta caldaria DSM 7334]
gi|338834583|gb|AEJ19761.1| transcription-repair coupling factor [Spirochaeta caldaria DSM 7334]
Length = 1133
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 260/649 (40%), Positives = 405/649 (62%), Gaps = 30/649 (4%)
Query: 146 SYKVDPY-SLRSGDYVVHKKVGIGKFVGIK----FDVQKDSTVPIEYVFIEYADG-MAKL 199
S +D + L GDYVVH GIG F GI+ ++D Y+ +EYAD +
Sbjct: 460 SAAIDTFVELNPGDYVVHVNYGIGLFKGIERIKALGHERD------YIKLEYADEEYVFV 513
Query: 200 PVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK 259
P++Q + ++ RY + NE PR L KL + +WE RK + K +++ + L++LY R
Sbjct: 514 PIEQVN-LVQRY-IGNEGNAPR-LDKLG-SKSWENRKNRVKKSVEDIAQRLIDLYSKRKA 569
Query: 260 QKRPPYPKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTE 318
+ +PK+ F A FPYE T DQ + +++RD+ E PMDRL+CGDVG+GKTE
Sbjct: 570 VQGYAFPKDTEWQTAFEAAFPYEETEDQLRCVEEIKRDM-ESPFPMDRLVCGDVGYGKTE 628
Query: 319 VALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378
VA+RA F V GKQ LAPT +LA+QH++ ERF+++P +++G+LSRF +AE +
Sbjct: 629 VAVRACFKAVMGGKQVAFLAPTTILAEQHYENFQERFAQFP-VRLGMLSRFVDRAEARKT 687
Query: 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLS 438
L+ +K G ++I+VGTH ++ VV+ +LGLLV+DEEQRFGVK KE++ K ++D LTLS
Sbjct: 688 LEAVKKGEIDILVGTHRIIQKDVVFKDLGLLVIDEEQRFGVKDKERLKELKTNIDCLTLS 747
Query: 439 ATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYV 498
ATPIPRTL+++L RD SL++TPP R P++T + F+++++ +AI+ E++RGGQVFY+
Sbjct: 748 ATPIPRTLHMSLLKIRDMSLLTTPPYNRHPVETTIDEFNEDRIAAAIRREVERGGQVFYL 807
Query: 499 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558
R++ L+E L++ P + I IAHGQ +LE+ M +F G +L+ T I+E+G+
Sbjct: 808 HNRVESLDEVRRMLERIVPEMLIDIAHGQMDPHELEDVMHRFIHGGFHVLVSTTIIENGI 867
Query: 559 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 618
DI N NTII+ +G++QLYQLRGRVGR+D+ A+AYLFYP LS+ A++RL + +
Sbjct: 868 DIPNVNTIIIDRADMYGVSQLYQLRGRVGRSDRVAYAYLFYPKDKALSELAMKRLQVISD 927
Query: 619 CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDE--HCVIS 676
ELG GF++A KDM IRG G + G +Q+GD+ +VG D++ +L E++ ++ + + V +
Sbjct: 928 FTELGSGFKIAMKDMEIRGAGNLLGREQSGDIYSVGFDMYLRLLDEAVQRLQDANYEVEN 987
Query: 677 VPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEP 736
Y +++ + +P YI+ + ME+ + AA Q L Q L ++G P
Sbjct: 988 ETY----LELEYSGFIPDSYIDSAQEKMEVYKKI--AAIQSRDELEQVYAELLDRFGPLP 1041
Query: 737 YSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSM 785
++ LL +R + D+ I + G MV ++ KV ++ +D +
Sbjct: 1042 DVVQSLLSLAEIRIICKDLSIASLKERGGMVRIEF---AKVSRVKVDRL 1087
>gi|167036600|ref|YP_001664178.1| transcription-repair coupling factor [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115027|ref|YP_004185186.1| transcription-repair coupling factor [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166855434|gb|ABY93842.1| transcription-repair coupling factor [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928118|gb|ADV78803.1| transcription-repair coupling factor [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 1165
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 261/627 (41%), Positives = 390/627 (62%), Gaps = 21/627 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L G YVVH GIGK+ GI+ ++ D V +Y+ I YA G +PV+Q ++ +Y
Sbjct: 501 LEIGSYVVHVNYGIGKYEGIE-KIKVDGIVR-DYLKIIYAGGDTLFVPVEQLD-LVQKYV 557
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
P T P L+KL + W R K K K A++ + DL++LY R K + P P
Sbjct: 558 GP--TDNPPKLNKLG-GSEWLRAKRKAKKAVEDLAKDLIQLYAKRQMVKGHAFSPDTPWQ 614
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF QFPYE T DQ + +++ D+ E++ PMDRL+CGDVG+GKTEVALRA F V+ G
Sbjct: 615 KEFEEQFPYEETEDQLRCIKEIKEDM-EKDRPMDRLLCGDVGYGKTEVALRAAFKAVADG 673
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA QH+ ERF ++P +K+ +LSRF++ E+ + + + G+++IIV
Sbjct: 674 KQVAFLCPTTILAYQHYANFIERFKEFP-VKIEMLSRFRTPKEQSKIIKELAEGNIDIIV 732
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL + + + +LGLL++DEEQRFGV KEKI K ++DVLTLSATPIPRTL+++L
Sbjct: 733 GTHRLLQNDIKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPRTLHMSLI 792
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ PP +R P++T++ F++E + AI E+ RGGQV++V R+ G+E+ F
Sbjct: 793 GIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILREIARGGQVYFVYNRVNGIEKMASF 852
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
++ PG +A+AHGQ QLE+ M F G +L+ T I+E+GLDI N NTIIV D
Sbjct: 853 VKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDA 912
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E E G GF++A +
Sbjct: 913 DKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMR 972
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV--QIDININ 689
D+ IRG G + G +Q G + +G DL+ ++L E++ + P + + IDI +N
Sbjct: 973 DLEIRGAGNLLGAEQHGHIDAIGYDLYLKLLEEAIRNLKGEA----PKEEITTTIDIKVN 1028
Query: 690 PRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+ S YI +EM + A + +D +++ +E L ++G P +E LL+ Y+
Sbjct: 1029 AYIDSSYIEDENLRLEMYKKIASIKSRED---MIEISEELVDRFGDYPKPVEALLEIAYL 1085
Query: 749 RRMAADIGITKIYASGKMVGMKTN-MN 774
+ +A+ + IT+I G V +K N MN
Sbjct: 1086 KAIASQVNITEITEKGNSVILKFNDMN 1112
>gi|224475645|ref|YP_002633251.1| putative transcription-repair coupling factor [Staphylococcus
carnosus subsp. carnosus TM300]
gi|222420252|emb|CAL27066.1| putative transcription-repair coupling factor [Staphylococcus
carnosus subsp. carnosus TM300]
Length = 1172
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 254/625 (40%), Positives = 398/625 (63%), Gaps = 29/625 (4%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--PVKQASR 206
L+ GDYVVH G+G+++G++ DV +D Y+ I+Y G +L PV Q +
Sbjct: 496 DLKIGDYVVHVHHGVGRYLGVETLEVGDVHRD------YIKIQYK-GTDQLFVPVDQMDQ 548
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP 266
+ +Y + +E K PR L+KL T W++ K K + +++ + +L+ELY R + Y
Sbjct: 549 -VQKY-VASEDKTPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIELYREREMAQGYQYG 604
Query: 267 KNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
+ EF FPY+ T DQ K+ ++++ D+ E+E PMDRL+CGDVG+GKTEVALRA F
Sbjct: 605 ADSEQQHEFEMDFPYDLTADQSKSIVEIKDDM-EKERPMDRLLCGDVGYGKTEVALRAAF 663
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
V GKQ L PT +LA+QH++ + ER +P + + L+SRF++ E +E ++ G
Sbjct: 664 KAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VNIELMSRFRTPKEVKETKKGLEDG 722
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++I+VGTH LL V Y +LGLLVVDEEQRFGV+ KE+I S K +VDVLTL+ATPIPRT
Sbjct: 723 TVDIVVGTHKLLAKDVKYKDLGLLVVDEEQRFGVRHKERIKSLKTNVDVLTLTATPIPRT 782
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L++++ G RD S+I TPP R P++T++ + + A++ EL RGGQ FY+ +++ +
Sbjct: 783 LHMSMLGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRGGQAFYLYNKVQSI 842
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
E + LQ P +I +AHG+ R+LE+TM F G IL+ T I+E+G+D+ NANT
Sbjct: 843 YEKKEQLQMLMPEANIGVAHGRMTERELEDTMIGFVDGEYDILVTTTIIETGVDVPNANT 902
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
+I++D +FGL+QLYQLRGRVGR+ + +AY +P +LS+ A ERL A++E ELG G
Sbjct: 903 LIIEDADRFGLSQLYQLRGRVGRSSRVGYAYFLHPTNKVLSETAEERLQAIKEFTELGSG 962
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VDEHCVISVPYKSV 682
F++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ + E + P +
Sbjct: 963 FKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEET--TTP--EI 1018
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
+ID+N++ LP+EYI + ++ +E+ + + ++ LM + L ++ + P +E L
Sbjct: 1019 EIDLNMDVYLPTEYIPNEQSKIEIYKKLRQIENEE--QLMDIKDELIDRFNEYPIQVERL 1076
Query: 743 LKKLYVRRMAADIGITKIYASGKMV 767
L + +R A ++G+ I +GK V
Sbjct: 1077 LDIVEMRIHALNVGVLHIKDTGKAV 1101
>gi|449120309|ref|ZP_21756695.1| transcription-repair coupling factor [Treponema denticola H1-T]
gi|449122714|ref|ZP_21759047.1| transcription-repair coupling factor [Treponema denticola MYR-T]
gi|448947704|gb|EMB28548.1| transcription-repair coupling factor [Treponema denticola MYR-T]
gi|448948453|gb|EMB29290.1| transcription-repair coupling factor [Treponema denticola H1-T]
Length = 1155
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 256/600 (42%), Positives = 378/600 (63%), Gaps = 30/600 (5%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK----FDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRML 208
L GDYVVH GIGKF GI+ D ++D Y+ + YA D +P++QA ++
Sbjct: 492 LNPGDYVVHVNYGIGKFRGIERVKILDTERD------YINLLYANDETVFIPIEQAD-LV 544
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
RY + NE + P + + +WE RK K K +++ + L++LY R + K+
Sbjct: 545 QRY-IGNEGEAPHL--DILGSKSWENRKNKVKKSVEDIAAKLIDLYSKRKASTGFAFQKD 601
Query: 269 PAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
F A FPYE T DQ +V+ D+ E+ PMDRLICGDVG+GKTEVA+RA F
Sbjct: 602 DEWQTAFEAAFPYEETDDQLTCIAEVKEDM-EKPVPMDRLICGDVGYGKTEVAMRAAFKA 660
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V +GKQ L+PT +L +QHF+ + +RF +P +K+ LSRF K E+++ L+ +K G +
Sbjct: 661 VMSGKQVAFLSPTTILTEQHFETLDKRFKNFP-VKLARLSRFVPKGEQKKVLEKLKKGEV 719
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH ++ VV+ +LGL++VDEEQRFGVK KE++ K +VD L+LSATPIPRTL+
Sbjct: 720 DILIGTHRIIQKDVVFKDLGLMIVDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLH 779
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
++L RD S+I+TPP R P++T ++ F+ EKV I+ E +RGGQVFY+ R++ L+E
Sbjct: 780 MSLLKIRDMSVIATPPQNRKPVETVIAEFNAEKVAEVIRRESERGGQVFYLHNRVESLDE 839
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ LQ P + I AHGQ QLEE E+F+ G ++LI T I+E+G+DI NANTII
Sbjct: 840 TLFMLQSLLPEIMIETAHGQMSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTII 899
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ +G++QLYQLRGRVGR+DK+A+AYL YPD LS+ A++RL + + ELG GF+
Sbjct: 900 IDRADMYGVSQLYQLRGRVGRSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFK 959
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ---I 684
+A KDM IRG G + G +Q+GD+ +VG DL+ +L E++ K+ Y+ VQ I
Sbjct: 960 IAMKDMEIRGAGNLLGREQSGDIYSVGFDLYLRLLDEAVQKLQNQ-----DYEPVQESVI 1014
Query: 685 DININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
++ + +P YI+ E ME+ + A + D+ + ++E L R +G P +E LL
Sbjct: 1015 ELEYSGFIPDSYISSPETKMEVYKKIAAVKVQGDLDRV--YSEILDR-FGPAPSEVESLL 1071
>gi|449126025|ref|ZP_21762319.1| transcription-repair coupling factor [Treponema denticola OTK]
gi|448938739|gb|EMB19666.1| transcription-repair coupling factor [Treponema denticola OTK]
Length = 1155
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 256/600 (42%), Positives = 378/600 (63%), Gaps = 30/600 (5%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK----FDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRML 208
L GDYVVH GIGKF GI+ D ++D Y+ + YA D +P++QA ++
Sbjct: 492 LNPGDYVVHVNYGIGKFRGIERVKILDTERD------YINLLYANDETVFIPIEQAD-LV 544
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
RY + NE + P + + +WE RK K K +++ + L++LY R + K+
Sbjct: 545 QRY-IGNEGEAPHL--DILGSKSWENRKNKVKKSVEDIAAKLIDLYSKRKASTGFAFQKD 601
Query: 269 PAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
F A FPYE T DQ +V+ D+ E+ PMDRLICGDVG+GKTEVA+RA F
Sbjct: 602 DEWQTAFEAAFPYEETDDQLTCIAEVKEDM-EKPVPMDRLICGDVGYGKTEVAMRAAFKA 660
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V +GKQ L+PT +L +QHF+ + +RF +P +K+ LSRF K E+++ L+ +K G +
Sbjct: 661 VMSGKQVAFLSPTTILTEQHFETLDKRFKNFP-VKLARLSRFVPKGEQKKVLEKLKKGEV 719
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH ++ VV+ +LGL++VDEEQRFGVK KE++ K +VD L+LSATPIPRTL+
Sbjct: 720 DILIGTHRIIQKDVVFKDLGLMIVDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLH 779
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
++L RD S+I+TPP R P++T ++ F+ EKV I+ E +RGGQVFY+ R++ L+E
Sbjct: 780 MSLLKIRDMSVIATPPQNRKPVETVIAEFNAEKVAEVIRRESERGGQVFYLHNRVESLDE 839
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ LQ P + I AHGQ QLEE E+F+ G ++LI T I+E+G+DI NANTII
Sbjct: 840 TLFMLQSLLPEIMIETAHGQMSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTII 899
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ +G++QLYQLRGRVGR+DK+A+AYL YPD LS+ A++RL + + ELG GF+
Sbjct: 900 IDRADMYGVSQLYQLRGRVGRSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFK 959
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ---I 684
+A KDM IRG G + G +Q+GD+ +VG DL+ +L E++ K+ Y+ VQ I
Sbjct: 960 IAMKDMEIRGAGNLLGREQSGDIYSVGFDLYLRLLDEAVQKLQNQ-----DYEPVQESVI 1014
Query: 685 DININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
++ + +P YI+ E ME+ + A + D+ + ++E L R +G P +E LL
Sbjct: 1015 ELEYSGFIPDSYISSPETKMEVYKKIAAVKVQGDLDRV--YSEILDR-FGPAPSEVESLL 1071
>gi|449109630|ref|ZP_21746264.1| transcription-repair coupling factor [Treponema denticola ATCC 33520]
gi|448958873|gb|EMB39601.1| transcription-repair coupling factor [Treponema denticola ATCC 33520]
Length = 1155
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 256/600 (42%), Positives = 378/600 (63%), Gaps = 30/600 (5%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK----FDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRML 208
L GDYVVH GIGKF GI+ D ++D Y+ + YA D +P++QA ++
Sbjct: 492 LNPGDYVVHVNYGIGKFRGIERVKILDTERD------YINLLYANDETVFIPIEQAD-LV 544
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
RY + NE + P + + +WE RK K K +++ + L++LY R + K+
Sbjct: 545 QRY-IGNEGEAPHL--DILGSKSWENRKNKVKKSVEDIAAKLIDLYSKRKASTGFAFQKD 601
Query: 269 PAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
F A FPYE T DQ +V+ D+ E+ PMDRLICGDVG+GKTEVA+RA F
Sbjct: 602 DEWQTAFEAAFPYEETDDQLTCIAEVKEDM-EKPVPMDRLICGDVGYGKTEVAMRAAFKA 660
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V +GKQ L+PT +L +QHF+ + +RF +P +K+ LSRF K E+++ L+ +K G +
Sbjct: 661 VMSGKQVAFLSPTTILTEQHFETLDKRFKNFP-VKLARLSRFVPKGEQKKVLEKLKKGEV 719
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH ++ VV+ +LGL++VDEEQRFGVK KE++ K +VD L+LSATPIPRTL+
Sbjct: 720 DILIGTHRIIQKDVVFKDLGLMIVDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLH 779
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
++L RD S+I+TPP R P++T ++ F+ EKV I+ E +RGGQVFY+ R++ L+E
Sbjct: 780 MSLLKIRDMSVIATPPQNRKPVETVIAEFNAEKVAEVIRRESERGGQVFYLHNRVESLDE 839
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ LQ P + I AHGQ QLEE E+F+ G ++LI T I+E+G+DI NANTII
Sbjct: 840 TLFMLQSLLPEIMIETAHGQMSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTII 899
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ +G++QLYQLRGRVGR+DK+A+AYL YPD LS+ A++RL + + ELG GF+
Sbjct: 900 IDRADMYGVSQLYQLRGRVGRSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFK 959
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ---I 684
+A KDM IRG G + G +Q+GD+ +VG DL+ +L E++ K+ Y+ VQ I
Sbjct: 960 IAMKDMEIRGAGNLLGREQSGDIYSVGFDLYLRLLDEAVQKLQNQ-----DYEPVQESVI 1014
Query: 685 DININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
++ + +P YI+ E ME+ + A + D+ + ++E L R +G P +E LL
Sbjct: 1015 ELEYSGFIPDSYISSPETKMEVYKKIAAVKVQGDLDRV--YSEILDR-FGPAPSEVESLL 1071
>gi|449128371|ref|ZP_21764617.1| transcription-repair coupling factor [Treponema denticola SP33]
gi|448940779|gb|EMB21683.1| transcription-repair coupling factor [Treponema denticola SP33]
Length = 1155
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 256/600 (42%), Positives = 378/600 (63%), Gaps = 30/600 (5%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK----FDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRML 208
L GDYVVH GIGKF GI+ D ++D Y+ + YA D +P++QA ++
Sbjct: 492 LNPGDYVVHVNYGIGKFRGIERVKILDTERD------YINLLYANDETVFIPIEQAD-LV 544
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
RY + NE + P + + +WE RK K K +++ + L++LY R + K+
Sbjct: 545 QRY-IGNEGEAPHL--DILGSKSWENRKNKVKKSVEDIAAKLIDLYSKRKASTGFAFQKD 601
Query: 269 PAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
F A FPYE T DQ +V+ D+ E+ PMDRLICGDVG+GKTEVA+RA F
Sbjct: 602 DEWQTAFEAAFPYEETDDQLTCIAEVKEDM-EKPVPMDRLICGDVGYGKTEVAMRAAFKA 660
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V +GKQ L+PT +L +QHF+ + +RF +P +K+ LSRF K E+++ L+ +K G +
Sbjct: 661 VMSGKQVAFLSPTTILTEQHFETLDKRFKNFP-VKLARLSRFVPKGEQKKVLEKLKKGEV 719
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH ++ VV+ +LGL++VDEEQRFGVK KE++ K +VD L+LSATPIPRTL+
Sbjct: 720 DILIGTHRIIQKDVVFKDLGLMIVDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLH 779
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
++L RD S+I+TPP R P++T ++ F+ EKV I+ E +RGGQVFY+ R++ L+E
Sbjct: 780 MSLLKIRDMSVIATPPQNRKPVETVIAEFNAEKVAQVIRRESERGGQVFYLHNRVESLDE 839
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ LQ P + I AHGQ QLEE E+F+ G ++LI T I+E+G+DI NANTII
Sbjct: 840 TLFMLQSLLPEIMIETAHGQMSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTII 899
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ +G++QLYQLRGRVGR+DK+A+AYL YPD LS+ A++RL + + ELG GF+
Sbjct: 900 IDRADMYGVSQLYQLRGRVGRSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFK 959
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ---I 684
+A KDM IRG G + G +Q+GD+ +VG DL+ +L E++ K+ Y+ VQ I
Sbjct: 960 IAMKDMEIRGAGNLLGREQSGDIYSVGFDLYLRLLDEAVQKLQNQ-----DYEPVQESVI 1014
Query: 685 DININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
++ + +P YI+ E ME+ + A + D+ + ++E L R +G P +E LL
Sbjct: 1015 ELEYSGFIPDSYISSPETKMEVYKKIAAVKVQGDLDRV--YSEILDR-FGPAPSEVESLL 1071
>gi|449102846|ref|ZP_21739593.1| transcription-repair coupling factor [Treponema denticola AL-2]
gi|448965648|gb|EMB46309.1| transcription-repair coupling factor [Treponema denticola AL-2]
Length = 1155
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 256/600 (42%), Positives = 378/600 (63%), Gaps = 30/600 (5%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK----FDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRML 208
L GDYVVH GIGKF GI+ D ++D Y+ + YA D +P++QA ++
Sbjct: 492 LNPGDYVVHVNYGIGKFRGIERVKILDTERD------YINLLYANDETVFIPIEQAD-LV 544
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
RY + NE + P + + +WE RK K K +++ + L++LY R + K+
Sbjct: 545 QRY-IGNEGEAPHL--DILGSKSWENRKNKVKKSVEDIAAKLIDLYSKRKASTGFAFQKD 601
Query: 269 PAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
F A FPYE T DQ +V+ D+ E+ PMDRLICGDVG+GKTEVA+RA F
Sbjct: 602 DEWQTAFEAAFPYEETDDQFTCIAEVKEDM-EKPVPMDRLICGDVGYGKTEVAMRAAFKA 660
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V +GKQ L+PT +L +QHF+ + +RF +P +K+ LSRF K E+++ L+ +K G +
Sbjct: 661 VMSGKQVAFLSPTTILTEQHFETLDKRFKNFP-VKLARLSRFVPKGEQKKVLEKLKKGEV 719
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH ++ VV+ +LGL++VDEEQRFGVK KE++ K +VD L+LSATPIPRTL+
Sbjct: 720 DILIGTHRIIQKDVVFKDLGLMIVDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLH 779
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
++L RD S+I+TPP R P++T ++ F+ EKV I+ E +RGGQVFY+ R++ L+E
Sbjct: 780 MSLLKIRDMSVIATPPQNRKPVETVIAEFNAEKVAEVIRRESERGGQVFYLHNRVESLDE 839
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ LQ P + I AHGQ QLEE E+F+ G ++LI T I+E+G+DI NANTII
Sbjct: 840 TLFMLQSLLPEIMIETAHGQMSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTII 899
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ +G++QLYQLRGRVGR+DK+A+AYL YPD LS+ A++RL + + ELG GF+
Sbjct: 900 IDRADMYGVSQLYQLRGRVGRSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFK 959
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ---I 684
+A KDM IRG G + G +Q+GD+ +VG DL+ +L E++ K+ Y+ VQ I
Sbjct: 960 IAMKDMEIRGAGNLLGREQSGDIYSVGFDLYLRLLDEAVQKLQNQ-----DYEPVQESVI 1014
Query: 685 DININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
++ + +P YI+ E ME+ + A + D+ + ++E L R +G P +E LL
Sbjct: 1015 ELEYSGFIPDSYISSPETKMEVYKKIAAVKVQGDLDRV--YSEILDR-FGPAPSEVESLL 1071
>gi|256003231|ref|ZP_05428223.1| transcription-repair coupling factor [Clostridium thermocellum DSM
2360]
gi|385777600|ref|YP_005686765.1| transcription-repair coupling factor [Clostridium thermocellum DSM
1313]
gi|419722853|ref|ZP_14249990.1| transcription-repair coupling factor [Clostridium thermocellum AD2]
gi|419726353|ref|ZP_14253376.1| transcription-repair coupling factor [Clostridium thermocellum YS]
gi|255992922|gb|EEU03012.1| transcription-repair coupling factor [Clostridium thermocellum DSM
2360]
gi|316939280|gb|ADU73314.1| transcription-repair coupling factor [Clostridium thermocellum DSM
1313]
gi|380770405|gb|EIC04302.1| transcription-repair coupling factor [Clostridium thermocellum YS]
gi|380781233|gb|EIC10894.1| transcription-repair coupling factor [Clostridium thermocellum AD2]
Length = 1178
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 260/669 (38%), Positives = 412/669 (61%), Gaps = 24/669 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L GDYVVH GIGK++GI+ V ++ V +Y+ I+Y+DG +P Q ++ +Y
Sbjct: 507 DLNVGDYVVHYVHGIGKYIGIEQLVVEN--VKKDYLKIQYSDGDYLYVPTNQLD-LIQKY 563
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E K P+ LSKL T W + + + K +++++ +L+ LY R + + K+
Sbjct: 564 -IGSEGKTPK-LSKLGGTD-WAKTRARTKESLKELAQELINLYAQREMAEGHAFGKDTVW 620
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F FPY+ T DQ + +++RD+ E PMDRL+CGDVG+GKTEVA+RA+F V
Sbjct: 621 QKQFEDLFPYQETEDQLRCIEEIKRDM-ESPRPMDRLLCGDVGYGKTEVAMRAVFKAVMD 679
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT VLA+QH++ ER +P I V +LSRF+++AE++ L +K G ++++
Sbjct: 680 GKQVAYLVPTTVLAQQHYNTFKERMKDFP-ITVEVLSRFRTQAEQKRILKDVKAGMVDVL 738
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH LL V + +LGLLV+DEEQRFGV KEKI K ++DVLTL+ATPIPRTL+++L
Sbjct: 739 IGTHRLLQKDVCFKDLGLLVIDEEQRFGVTHKEKIKQMKTNIDVLTLTATPIPRTLHMSL 798
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S I PP ER P++T++ ++ E V AI E+ RGGQVFY+ R++ + +
Sbjct: 799 VGIRDISTIEEPPEERYPVQTYVMEYNDEVVRDAINREMSRGGQVFYLYNRVRAINQKAA 858
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P +AIAHGQ +LE M +F G IL+CT I+ESGLD+ N NTIIV+D
Sbjct: 859 EIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVED 918
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GLAQLYQLRGRVGR+++ A+AY+ Y +LS+ A +RL A++E E G GF++A
Sbjct: 919 ADKMGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAM 978
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ +RG G + G QQ G + +VG D++ ++L E+++++ ++ + + ID+N++
Sbjct: 979 RDLQLRGAGNLLGPQQHGHIDSVGYDMYCKLLAEAVNEL-RGIPVTKEDEEISIDVNVSA 1037
Query: 691 RLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+ ++YI ++M + A EQD+ + + L +YG+ P ++ LL+ Y++
Sbjct: 1038 YIDNDYIGDENQKIDMYKKIASINDEQDV---IDAEDELMDRYGEIPQPVKNLLQIAYIK 1094
Query: 750 RMAADIGITKIYASGKMVGMK----TNMNKKVFKMMIDS-----MTSEVHRNSLTFEGDQ 800
+A G + + V + N+N +V ++D + + +R +TF+
Sbjct: 1095 SLAKACGFSSVQEKNDTVIFQYSESKNINFEVLGKLMDKYRRKLLFTASNRPYITFKTTG 1154
Query: 801 IKAELLLEL 809
+K E LLE+
Sbjct: 1155 VKGEELLEI 1163
>gi|449131039|ref|ZP_21767256.1| transcription-repair coupling factor [Treponema denticola SP37]
gi|448940385|gb|EMB21291.1| transcription-repair coupling factor [Treponema denticola SP37]
Length = 1155
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 256/600 (42%), Positives = 378/600 (63%), Gaps = 30/600 (5%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK----FDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRML 208
L GDYVVH GIGKF GI+ D ++D Y+ + YA D +P++QA ++
Sbjct: 492 LNPGDYVVHVNYGIGKFRGIERVKILDTERD------YINLLYANDETVFIPIEQAD-LV 544
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
RY + NE + P + + +WE RK K K +++ + L++LY R + K+
Sbjct: 545 QRY-IGNEGEAPHL--DILGSKSWENRKNKVKKSVEDIAAKLIDLYSKRKASTGFAFQKD 601
Query: 269 PAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
F A FPYE T DQ +V+ D+ E+ PMDRLICGDVG+GKTEVA+RA F
Sbjct: 602 DEWQTAFEAAFPYEETDDQLTCISEVKEDM-EKPVPMDRLICGDVGYGKTEVAMRAAFKA 660
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V +GKQ L+PT +L +QHF+ + +RF +P +K+ LSRF K E+++ L+ +K G +
Sbjct: 661 VMSGKQVAFLSPTTILTEQHFETLDKRFKNFP-VKLARLSRFVPKGEQKKVLEKLKKGEV 719
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH ++ VV+ +LGL++VDEEQRFGVK KE++ K +VD L+LSATPIPRTL+
Sbjct: 720 DILIGTHRIIQKDVVFKDLGLMIVDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLH 779
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
++L RD S+I+TPP R P++T ++ F+ EKV I+ E +RGGQVFY+ R++ L+E
Sbjct: 780 MSLLKIRDMSVIATPPQNRKPVETVIAEFNAEKVAEVIRRESERGGQVFYLHNRVESLDE 839
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ LQ P + I AHGQ QLEE E+F+ G ++LI T I+E+G+DI NANTII
Sbjct: 840 TLFMLQSLLPEIMIETAHGQMSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTII 899
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ +G++QLYQLRGRVGR+DK+A+AYL YPD LS+ A++RL + + ELG GF+
Sbjct: 900 IDRADMYGVSQLYQLRGRVGRSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFK 959
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ---I 684
+A KDM IRG G + G +Q+GD+ +VG DL+ +L E++ K+ Y+ VQ I
Sbjct: 960 IAMKDMEIRGAGNLLGREQSGDIYSVGFDLYLRLLDEAVQKLQNQ-----DYEPVQESVI 1014
Query: 685 DININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
++ + +P YI+ E ME+ + A + D+ + ++E L R +G P +E LL
Sbjct: 1015 ELEYSGFIPDSYISSPETKMEVYKKIAAVKVQGDLDRV--YSEILDR-FGPAPSEVESLL 1071
>gi|42526796|ref|NP_971894.1| transcription-repair coupling factor [Treponema denticola ATCC 35405]
gi|449112139|ref|ZP_21748694.1| transcription-repair coupling factor [Treponema denticola ATCC 33521]
gi|449113057|ref|ZP_21749572.1| transcription-repair coupling factor [Treponema denticola ATCC 35404]
gi|41817111|gb|AAS11805.1| transcription-repair coupling factor [Treponema denticola ATCC 35405]
gi|448956420|gb|EMB37181.1| transcription-repair coupling factor [Treponema denticola ATCC 33521]
gi|448960637|gb|EMB41346.1| transcription-repair coupling factor [Treponema denticola ATCC 35404]
Length = 1155
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 256/600 (42%), Positives = 378/600 (63%), Gaps = 30/600 (5%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK----FDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRML 208
L GDYVVH GIGKF GI+ D ++D Y+ + YA D +P++QA ++
Sbjct: 492 LNPGDYVVHVNYGIGKFRGIERVKILDTERD------YINLLYANDETVFIPIEQAD-LV 544
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
RY + NE + P + + +WE RK K K +++ + L++LY R + K+
Sbjct: 545 QRY-IGNEGEAPHL--DILGSKSWENRKNKVKKSVEDIAAKLIDLYSKRKASTGFAFQKD 601
Query: 269 PAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
F A FPYE T DQ +V+ D+ E+ PMDRLICGDVG+GKTEVA+RA F
Sbjct: 602 DEWQTAFEAAFPYEETDDQLTCIAEVKEDM-EKPVPMDRLICGDVGYGKTEVAMRAAFKA 660
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V +GKQ L+PT +L +QHF+ + +RF +P +K+ LSRF K E+++ L+ +K G +
Sbjct: 661 VMSGKQVAFLSPTTILTEQHFETLDKRFKNFP-VKLARLSRFVPKGEQKKVLEKLKKGEV 719
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH ++ VV+ +LGL++VDEEQRFGVK KE++ K +VD L+LSATPIPRTL+
Sbjct: 720 DILIGTHRIIQKDVVFKDLGLMIVDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLH 779
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
++L RD S+I+TPP R P++T ++ F+ EKV I+ E +RGGQVFY+ R++ L+E
Sbjct: 780 MSLLKIRDMSVIATPPQNRKPVETVIAEFNAEKVAEVIRRESERGGQVFYLHNRVESLDE 839
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ LQ P + I AHGQ QLEE E+F+ G ++LI T I+E+G+DI NANTII
Sbjct: 840 TLFMLQSLLPEIMIETAHGQMSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTII 899
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ +G++QLYQLRGRVGR+DK+A+AYL YPD LS+ A++RL + + ELG GF+
Sbjct: 900 IDRADMYGVSQLYQLRGRVGRSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFK 959
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ---I 684
+A KDM IRG G + G +Q+GD+ +VG DL+ +L E++ K+ Y+ VQ I
Sbjct: 960 IAMKDMEIRGAGNLLGREQSGDIYSVGFDLYLRLLDEAVQKLKNQ-----DYEPVQESVI 1014
Query: 685 DININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
++ + +P YI+ E ME+ + A + D+ + ++E L R +G P +E LL
Sbjct: 1015 ELEYSGFIPDSYISSPETKMEVYKKIAAVKVQGDLDRV--YSEILDR-FGPAPSEVESLL 1071
>gi|449107153|ref|ZP_21743811.1| transcription-repair coupling factor [Treponema denticola ASLM]
gi|451968850|ref|ZP_21922079.1| transcription-repair coupling factor [Treponema denticola US-Trep]
gi|448963191|gb|EMB43872.1| transcription-repair coupling factor [Treponema denticola ASLM]
gi|451702303|gb|EMD56725.1| transcription-repair coupling factor [Treponema denticola US-Trep]
Length = 1155
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 256/600 (42%), Positives = 378/600 (63%), Gaps = 30/600 (5%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK----FDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRML 208
L GDYVVH GIGKF GI+ D ++D Y+ + YA D +P++QA ++
Sbjct: 492 LNPGDYVVHVNYGIGKFRGIERVKILDTERD------YINLLYANDETVFIPIEQAD-LV 544
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
RY + NE + P + + +WE RK K K +++ + L++LY R + K+
Sbjct: 545 QRY-IGNEGEAPHL--DILGSKSWENRKNKVKKSVEDIAAKLIDLYSKRKASTGFAFQKD 601
Query: 269 PAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
F A FPYE T DQ +V+ D+ E+ PMDRLICGDVG+GKTEVA+RA F
Sbjct: 602 DEWQTAFEAAFPYEETDDQLTCIAEVKEDM-EKPVPMDRLICGDVGYGKTEVAMRAAFKA 660
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V +GKQ L+PT +L +QHF+ + +RF +P +K+ LSRF K E+++ L+ +K G +
Sbjct: 661 VMSGKQVAFLSPTTILTEQHFETLDKRFKNFP-VKLARLSRFVPKGEQKKVLEKLKKGEV 719
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH ++ VV+ +LGL++VDEEQRFGVK KE++ K +VD L+LSATPIPRTL+
Sbjct: 720 DILIGTHRIIQKDVVFKDLGLMIVDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLH 779
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
++L RD S+I+TPP R P++T ++ F+ EKV I+ E +RGGQVFY+ R++ L+E
Sbjct: 780 MSLLKIRDMSVIATPPQNRKPVETVIAEFNAEKVAEVIRRESERGGQVFYLHNRVESLDE 839
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ LQ P + I AHGQ QLEE E+F+ G ++LI T I+E+G+DI NANTII
Sbjct: 840 TLFMLQSLLPEIMIETAHGQMSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTII 899
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ +G++QLYQLRGRVGR+DK+A+AYL YPD LS+ A++RL + + ELG GF+
Sbjct: 900 IDRADMYGVSQLYQLRGRVGRSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFK 959
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ---I 684
+A KDM IRG G + G +Q+GD+ +VG DL+ +L E++ K+ Y+ VQ I
Sbjct: 960 IAMKDMEIRGAGNLLGREQSGDIYSVGFDLYLRLLDEAVQKLQNQ-----DYEPVQESVI 1014
Query: 685 DININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
++ + +P YI+ E ME+ + A + D+ + ++E L R +G P +E LL
Sbjct: 1015 ELEYSGFIPDSYISSPETKMEVYKKIAAVKVQGDLDRV--YSEILDR-FGPAPSEVESLL 1071
>gi|281418467|ref|ZP_06249486.1| transcription-repair coupling factor [Clostridium thermocellum JW20]
gi|281407551|gb|EFB37810.1| transcription-repair coupling factor [Clostridium thermocellum JW20]
Length = 1178
Score = 461 bits (1185), Expect = e-126, Method: Compositional matrix adjust.
Identities = 260/669 (38%), Positives = 412/669 (61%), Gaps = 24/669 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L GDYVVH GIGK++GI+ V ++ V +Y+ I+Y+DG +P Q ++ +Y
Sbjct: 507 DLNVGDYVVHYVHGIGKYIGIEQLVVEN--VKKDYLKIQYSDGDYLYVPTNQLD-LIQKY 563
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E K P+ LSKL T W + + + K +++++ +L+ LY R + + K+
Sbjct: 564 -IGSEGKTPK-LSKLGGTD-WAKTRARTKESLKELAQELINLYAQREMVEGHAFGKDTVW 620
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F FPY+ T DQ + +++RD+ E PMDRL+CGDVG+GKTEVA+RA+F V
Sbjct: 621 QKQFEDLFPYQETEDQLRCIEEIKRDM-ESPRPMDRLLCGDVGYGKTEVAMRAVFKAVMD 679
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT VLA+QH++ ER +P I V +LSRF+++AE++ L +K G ++++
Sbjct: 680 GKQVAYLVPTTVLAQQHYNTFKERMKDFP-ITVEVLSRFRTQAEQKRILKDVKAGMVDVL 738
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH LL V + +LGLLV+DEEQRFGV KEKI K ++DVLTL+ATPIPRTL+++L
Sbjct: 739 IGTHRLLQKDVCFKDLGLLVIDEEQRFGVTHKEKIKQMKTNIDVLTLTATPIPRTLHMSL 798
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S I PP ER P++T++ ++ E V AI E+ RGGQVFY+ R++ + +
Sbjct: 799 VGIRDISTIEEPPEERYPVQTYVMEYNDEVVRDAINREMSRGGQVFYLYNRVRAINQKAA 858
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P +AIAHGQ +LE M +F G IL+CT I+ESGLD+ N NTIIV+D
Sbjct: 859 EIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVED 918
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GLAQLYQLRGRVGR+++ A+AY+ Y +LS+ A +RL A++E E G GF++A
Sbjct: 919 ADKMGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAM 978
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ +RG G + G QQ G + +VG D++ ++L E+++++ ++ + + ID+N++
Sbjct: 979 RDLQLRGAGNLLGPQQHGHIDSVGYDMYCKLLAEAVNEL-RGIPVTKEDEEISIDVNVSA 1037
Query: 691 RLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+ ++YI ++M + A EQD+ + + L +YG+ P ++ LL+ Y++
Sbjct: 1038 YIDNDYIGDENQKIDMYKKIASINDEQDV---IDAEDELMDRYGEIPQPVKNLLQIAYIK 1094
Query: 750 RMAADIGITKIYASGKMVGMK----TNMNKKVFKMMIDS-----MTSEVHRNSLTFEGDQ 800
+A G + + V + N+N +V ++D + + +R +TF+
Sbjct: 1095 SLAKACGFSSVQEKNDTVIFQYSESKNINFEVLGKLMDKYRRKLLFTASNRPYITFKTTG 1154
Query: 801 IKAELLLEL 809
+K E LLE+
Sbjct: 1155 VKGEELLEI 1163
>gi|445060520|ref|YP_007385924.1| transcription-repair coupling factor [Staphylococcus warneri SG1]
gi|443426577|gb|AGC91480.1| transcription-repair coupling factor [Staphylococcus warneri SG1]
Length = 1169
Score = 461 bits (1185), Expect = e-126, Method: Compositional matrix adjust.
Identities = 258/630 (40%), Positives = 400/630 (63%), Gaps = 27/630 (4%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
K+ Y L GDYVVH G+G+++G++ +V + +Y+ ++Y G +L PV Q
Sbjct: 489 KIKSYQDLNVGDYVVHVHHGVGRYLGVETLEVGEQHR---DYIKLQYK-GTDQLFVPVDQ 544
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
+ + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R +
Sbjct: 545 MDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKQR--EMSV 598
Query: 264 PYPKNPAIAE---FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320
Y P E F FPYE TPDQ K+ +++ D+ ERE PMDRL+CGDVG+GKTEVA
Sbjct: 599 GYQFGPDTEEQSTFELDFPYELTPDQSKSIDEIKGDM-ERERPMDRLLCGDVGYGKTEVA 657
Query: 321 LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380
+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF+S E +E +
Sbjct: 658 VRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLISRFRSTKEVKETKE 716
Query: 381 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSAT 440
+K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+AT
Sbjct: 717 GLKSGYVDIVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTLKNNVDVLTLTAT 776
Query: 441 PIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLP 500
PIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 777 PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYN 836
Query: 501 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+
Sbjct: 837 KVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDV 896
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 897 PNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFT 956
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VDEHCVISV 677
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ + E V
Sbjct: 957 ELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEEAP-DV 1015
Query: 678 PYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPY 737
P V++++N++ LP+EYI + + +E+ + K +D LM + L ++ P
Sbjct: 1016 P--DVEVELNLDAYLPAEYIQNEQAKIEIYKKLRKVETED--QLMDIKDELIDRFNDYPT 1071
Query: 738 SMEILLKKLYVRRMAADIGITKIYASGKMV 767
+E LL + ++ A GITKI GK +
Sbjct: 1072 EVERLLDIVEIKTHALHAGITKIKDMGKQI 1101
>gi|125975114|ref|YP_001039024.1| transcription-repair coupling factor [Clostridium thermocellum ATCC
27405]
gi|125715339|gb|ABN53831.1| transcription-repair coupling factor [Clostridium thermocellum ATCC
27405]
Length = 1178
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 260/669 (38%), Positives = 412/669 (61%), Gaps = 24/669 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L GDYVVH GIGK++GI+ V ++ V +Y+ I+Y+DG +P Q ++ +Y
Sbjct: 507 DLNVGDYVVHYVHGIGKYIGIEQLVVEN--VKKDYLKIQYSDGDYLYVPTNQLD-LIQKY 563
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E K P+ LSKL T W + + + K +++++ +L+ LY R + + K+
Sbjct: 564 -IGSEGKTPK-LSKLGGTD-WAKTRARTKESLKELAQELINLYAQREMAEGHAFGKDTVW 620
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F FPY+ T DQ + +++RD+ E PMDRL+CGDVG+GKTEVA+RA+F V
Sbjct: 621 QKQFEDLFPYQETEDQLRCIEEIKRDM-ESPRPMDRLLCGDVGYGKTEVAMRAVFKAVMD 679
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT VLA+QH++ ER +P I V +LSRF+++AE++ L +K G ++++
Sbjct: 680 GKQVAYLVPTTVLAQQHYNTFKERMKDFP-ITVEVLSRFRTQAEQKRILKDVKAGMVDVL 738
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH LL V + +LGLLV+DEEQRFGV KEKI K ++DVLTL+ATPIPRTL+++L
Sbjct: 739 IGTHRLLQKDVCFKDLGLLVIDEEQRFGVTHKEKIKRMKTNIDVLTLTATPIPRTLHMSL 798
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S I PP ER P++T++ ++ E V AI E+ RGGQVFY+ R++ + +
Sbjct: 799 VGIRDISTIEEPPEERYPVQTYVMEYNDEVVRDAINREMSRGGQVFYLYNRVRAINQKAA 858
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P +AIAHGQ +LE M +F G IL+CT I+ESGLD+ N NTIIV+D
Sbjct: 859 EIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVED 918
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GLAQLYQLRGRVGR+++ A+AY+ Y +LS+ A +RL A++E E G GF++A
Sbjct: 919 ADKMGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAM 978
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ +RG G + G QQ G + +VG D++ ++L E+++++ ++ + + ID+N++
Sbjct: 979 RDLQLRGAGNLLGPQQHGHIDSVGYDMYCKLLAEAVNEL-RGIPVTKEDEEISIDVNVSA 1037
Query: 691 RLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+ ++YI ++M + A EQD+ + + L +YG+ P ++ LL+ Y++
Sbjct: 1038 YIDNDYIGDENQKIDMYKKIASINDEQDV---IDAEDELMDRYGEIPQPVKNLLQIAYIK 1094
Query: 750 RMAADIGITKIYASGKMVGMK----TNMNKKVFKMMIDS-----MTSEVHRNSLTFEGDQ 800
+A G + + V + N+N +V ++D + + +R +TF+
Sbjct: 1095 SLAKACGFSSVQEKNDTVIFQYSESKNINFEVLGKLMDKYRRKLLFTASNRPYITFKTTG 1154
Query: 801 IKAELLLEL 809
+K E LLE+
Sbjct: 1155 VKGEELLEI 1163
>gi|406980787|gb|EKE02348.1| hypothetical protein ACD_20C00398G0001 [uncultured bacterium]
Length = 1183
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 258/613 (42%), Positives = 379/613 (61%), Gaps = 22/613 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI---KFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRML 208
L+ DYVVH + GIGKF+G+ K D Q+ +Y+ IEY+ G +L P +Q + ML
Sbjct: 502 LQPNDYVVHNRHGIGKFIGLSKQKIDEQEK-----DYLTIEYS-GTDRLHMPAEQIN-ML 554
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
RY LSK+ W K K K AI+ + DL+ LY R K + +
Sbjct: 555 SRYR--GAAGAAPKLSKMGGA-EWTGVKKKVKNAIRDIAQDLLNLYAKRAKTNGFIFESD 611
Query: 269 -PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
P E FPY TPDQ +A ++ + D+ E E PMDRLICGDVGFGKTEVA+RAIF
Sbjct: 612 SPWQIEMEDAFPYTETPDQLQAIINTKSDM-ESEKPMDRLICGDVGFGKTEVAIRAIFKA 670
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
+ +GKQA +LAPT +LA+QH+ +RF YP +K+ LLSRF++ +++E + + G
Sbjct: 671 ILSGKQAALLAPTTILAQQHYQTFVDRFKPYP-VKIELLSRFRTPKQQKEAIKKLLTGEC 729
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
++++GTH LL + + N+GLLV+DEE RFGV KEK+ + VDV+TLSATPIPRTLY
Sbjct: 730 DLVIGTHRLLQKDIQFKNIGLLVIDEEHRFGVAHKEKLKHLRAEVDVMTLSATPIPRTLY 789
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+AL+G R+ SLI+TPP R PIKT++ ++ V +AI +EL+R GQ++++ R++ + +
Sbjct: 790 MALSGVREMSLINTPPINRAPIKTYVGEYNNSMVRTAISHELEREGQIYFLHNRVQSIYK 849
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
LQ+ P IA+AHGQ ++LE+ M +F+ IL+CT I+ESGLDI N NTII
Sbjct: 850 VAKDLQELIPAARIAVAHGQMQEKELEKAMYEFSTHQYDILVCTTIIESGLDIPNVNTII 909
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
V D +FGLAQLYQ+RGRVGR++ +A+AY FY LL+ +A +RL A+++ LG G+Q
Sbjct: 910 VDDSDKFGLAQLYQIRGRVGRSETQAYAYCFYRPNKLLTPEAKDRLKAIKDFTTLGSGYQ 969
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDIN 687
+A +D+ IRG G I G Q G + +VG DL+ +L ES+ ++ V + +DIN
Sbjct: 970 IALRDLEIRGVGNILGANQHGHMLSVGFDLYCSLLDESIRELQNQKVDK--KEPPIVDIN 1027
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
I +P E++ + +M+ A + + L + + ++G P ++ L K +
Sbjct: 1028 ITAYIPDEWVG--DKDQKMIEYKRLADVESLKELEIIQDEWKDRFGDIPVEVQRLFKIIK 1085
Query: 748 VRRMAADIGITKI 760
+R +AA+IGI I
Sbjct: 1086 IRLIAAEIGINLI 1098
>gi|449115642|ref|ZP_21752102.1| transcription-repair coupling factor [Treponema denticola H-22]
gi|448955128|gb|EMB35895.1| transcription-repair coupling factor [Treponema denticola H-22]
Length = 1155
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 256/600 (42%), Positives = 377/600 (62%), Gaps = 30/600 (5%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK----FDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRML 208
L GDYVVH GIGKF GI+ D ++D Y+ + Y D +P++QA ++
Sbjct: 492 LNPGDYVVHVNYGIGKFRGIERVKILDTERD------YINLLYTNDETVFIPIEQAD-LV 544
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
RY + NE + P + + +WE RK K K +++ + L++LY R + K+
Sbjct: 545 QRY-IGNEGEAPHL--DILGSKSWENRKNKVKKSVEDIAAKLIDLYSKRKASTGFAFQKD 601
Query: 269 PAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
F A FPYE T DQ +V+ D+ E+ PMDRLICGDVG+GKTEVA+RA F
Sbjct: 602 DEWQTAFEAAFPYEETDDQLTCIAEVKEDM-EKPVPMDRLICGDVGYGKTEVAMRAAFKA 660
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V +GKQ L+PT +L +QHF+ + +RF +P +K+ LSRF K E+++ L+ +K G +
Sbjct: 661 VMSGKQVAFLSPTTILTEQHFETLDKRFKNFP-VKLARLSRFVPKGEQKKVLEKLKKGEV 719
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH ++ VV+ +LGL++VDEEQRFGVK KEK+ K +VD L+LSATPIPRTL+
Sbjct: 720 DILIGTHRIIQKDVVFKDLGLMIVDEEQRFGVKDKEKLKQMKHNVDCLSLSATPIPRTLH 779
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
++L RD S+I+TPP R P++T ++ F+ EKV I+ E +RGGQVFY+ R++ L+E
Sbjct: 780 MSLLKIRDMSVIATPPQNRKPVETVIAEFNAEKVAEVIRRESERGGQVFYLHNRVESLDE 839
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ LQ P + I AHGQ QLEE E+F+ G ++LI T I+E+G+DI NANTII
Sbjct: 840 TLFMLQSLLPEIMIETAHGQMSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTII 899
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ +G++QLYQLRGRVGR+DK+A+AYL YPD LS+ A++RL + + ELG GF+
Sbjct: 900 IDRADMYGVSQLYQLRGRVGRSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFK 959
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ---I 684
+A KDM IRG G + G +Q+GD+ +VG DL+ +L E++ K+ Y+ VQ I
Sbjct: 960 IAMKDMEIRGAGNLLGREQSGDIYSVGFDLYLRLLDEAVQKLQNQ-----DYEPVQESVI 1014
Query: 685 DININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
++ + +P YI+ E ME+ + A + D+ + ++E L R +G P +E LL
Sbjct: 1015 ELEYSGFIPDSYISSPETKMEVYKKIAAVKVQGDLDRV--YSEILDR-FGPAPSEVESLL 1071
>gi|417643169|ref|ZP_12293230.1| transcription-repair coupling factor [Staphylococcus warneri VCU121]
gi|330686080|gb|EGG97702.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU121]
Length = 1169
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 258/630 (40%), Positives = 400/630 (63%), Gaps = 27/630 (4%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
K+ Y L GDYVVH G+G+++G++ +V + +Y+ ++Y G +L PV Q
Sbjct: 489 KIKSYQDLNVGDYVVHVHHGVGRYLGVETLEVGEQHR---DYIKLQYK-GTDQLFVPVDQ 544
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
+ + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R +
Sbjct: 545 MDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKQR--EMSV 598
Query: 264 PYPKNPAIAE---FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320
Y P E F FPYE TPDQ K+ +++ D+ ERE PMDRL+CGDVG+GKTEVA
Sbjct: 599 GYQFGPDTEEQSTFELDFPYELTPDQSKSIDEIKGDM-ERERPMDRLLCGDVGYGKTEVA 657
Query: 321 LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380
+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF+S E +E +
Sbjct: 658 VRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLISRFRSTKEVKETKE 716
Query: 381 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSAT 440
+K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+AT
Sbjct: 717 GLKSGYVDIVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTLKNNVDVLTLTAT 776
Query: 441 PIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLP 500
PIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 777 PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYN 836
Query: 501 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+
Sbjct: 837 KVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDV 896
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 897 PNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFT 956
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VDEHCVISV 677
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ + E V
Sbjct: 957 ELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEEAP-DV 1015
Query: 678 PYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPY 737
P V++++N++ LP+EYI + + +E+ + K +D LM + L ++ P
Sbjct: 1016 P--DVEVELNLDAYLPAEYIQNEQAKIEIYKKLRKVETED--QLMDIKDELIDRFNDYPT 1071
Query: 738 SMEILLKKLYVRRMAADIGITKIYASGKMV 767
+E LL + ++ A GITKI GK +
Sbjct: 1072 EVERLLDIVEIKTHALHAGITKIKDMGKQI 1101
>gi|326390842|ref|ZP_08212394.1| transcription-repair coupling factor [Thermoanaerobacter ethanolicus
JW 200]
gi|325993101|gb|EGD51541.1| transcription-repair coupling factor [Thermoanaerobacter ethanolicus
JW 200]
Length = 1169
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 257/622 (41%), Positives = 386/622 (62%), Gaps = 20/622 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L G YVVH GIGK+ GI+ ++ D + +Y+ I YA G +PV+Q ++ +Y
Sbjct: 501 LEVGSYVVHVNYGIGKYEGIE-KIKVDGIIR-DYLKIIYAGGDTLFVPVEQLD-LVQKYV 557
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
P T P L+KL + W R K K K A++ + DL++LY R K + P P
Sbjct: 558 GP--TDNPPKLNKLG-GSEWLRAKRKAKKAVEDLAKDLIQLYAKRQMVKGHAFSPDTPWQ 614
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF QFPYE T DQ + +++ D+ E++ PMDRL+CGDVG+GKTEVALRA F V+ G
Sbjct: 615 KEFEEQFPYEETEDQLRCIKEIKEDM-EKDRPMDRLLCGDVGYGKTEVALRAAFKAVADG 673
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA QH+ ERF ++P +K+ +LSRF++ E+ + + + G ++IIV
Sbjct: 674 KQVAFLCPTTILAYQHYTNFIERFKEFP-VKIEMLSRFRTPKEQAQIIKGLAEGTIDIIV 732
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL + V + +LGLL++DEEQRFGV KEKI K ++DVLTLSATPIPRTL+++L
Sbjct: 733 GTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPRTLHMSLI 792
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ PP +R P++T++ F++E + AI E+ RGGQV++V R+ G+E+
Sbjct: 793 GIRDMSVLENPPEDRFPVETYVMEFNEELIKDAILREIGRGGQVYFVYNRVNGIEKMASL 852
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
++ PG +A+AHGQ QLE+ M F G +L+ T I+E+GLDI N NTIIV D
Sbjct: 853 VKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDA 912
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E E G GF++A +
Sbjct: 913 DKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMR 972
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV--QIDININ 689
D+ IRG G + G +Q G + +G DL+ ++L E++ + P + + IDI +N
Sbjct: 973 DLEIRGAGNLLGAEQHGHINAIGYDLYLKLLEEAIRNLKGEA----PKEEITTTIDIKVN 1028
Query: 690 PRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+ S YI +EM + A + +D +++ +E L ++G P +E LL+ Y+
Sbjct: 1029 AYIDSSYIEDENLRLEMYKKIASIESRED---MIEISEELVDRFGDYPKPVEALLEIAYL 1085
Query: 749 RRMAADIGITKIYASGKMVGMK 770
+ +A+ + IT+I G +V +K
Sbjct: 1086 KAIASQLYITEITEKGNVVILK 1107
>gi|156741461|ref|YP_001431590.1| transcription-repair coupling factor [Roseiflexus castenholzii DSM
13941]
gi|156232789|gb|ABU57572.1| transcription-repair coupling factor [Roseiflexus castenholzii DSM
13941]
Length = 1246
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 270/675 (40%), Positives = 393/675 (58%), Gaps = 62/675 (9%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKD-STVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH + GI + G+ V++ V +Y+ + YA+G +PV Q R+ RY
Sbjct: 539 LKPGDYVVHIEHGIAVYEGL---VRRSVGGVARDYLNLRYAEGDRLYVPVDQIDRV-SRY 594
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPA 270
+ + P+ L++L T WER K K + A+Q + +L+ LY R L + P
Sbjct: 595 IGAGDAE-PQ-LTRLG-TQDWERAKRKARAAVQDLADELIGLYAQRQLAEGHAFSPDTEW 651
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E A FPY TPDQ KA +DV+RD+ E+ PMDRLICGDVGFGKTEVALRA F V
Sbjct: 652 QRELEASFPYVETPDQLKAIIDVKRDM-EQPQPMDRLICGDVGFGKTEVALRAAFKAVQD 710
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ VLAPT VL +QH+D S R + +P ++V ++SRF+S E+ + + + G +++I
Sbjct: 711 GKQVAVLAPTTVLVQQHYDTFSRRMAAFP-VRVEMISRFRSAKEQSDIVRRLARGEIDVI 769
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH LL VV+ +LGLLVVDEEQRFGV+ KE+I + +VDV+TL+ATPIPRTL++AL
Sbjct: 770 IGTHRLLSKDVVFKDLGLLVVDEEQRFGVRHKERIKQLRTNVDVITLTATPIPRTLHMAL 829
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+I TPP +R+PIKT++ + + + AI ELDRGGQV++V R++ + D
Sbjct: 830 AGIRDLSVIDTPPEDRIPIKTYVLPYDENLIREAILRELDRGGQVYFVHNRVQSIYYVAD 889
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L+Q P IA+ HGQ RQLE M F G +L+CT I+ESGLD+ NANTII+ D
Sbjct: 890 RLRQLVPEARIAVGHGQLDERQLERVMLDFFTGRDDVLVCTTIIESGLDVPNANTIIIDD 949
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGLAQLYQLRGRVGR + A+AYLFY + + +A ERL A++E ELG GF++A
Sbjct: 950 ATHFGLAQLYQLRGRVGRGTQRAYAYLFYRSERPSTPEAQERLQAIQEATELGAGFRIAM 1009
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS----------------------- 667
+D+ IRG G + G +Q+G + VG DL+ +L +++
Sbjct: 1010 RDLEIRGAGNLLGAEQSGHIAAVGFDLYSRLLEQAVRTLKQRLIATNLITGADVLRATPT 1069
Query: 668 --------------------KVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMV 707
+VDE +IS V +D+ ++ LP +YI ++ + +
Sbjct: 1070 TETTAPTPLRPSPAPRQPPVRVDEKVLIS---PLVTLDLPLDAYLPVDYIP--DDQVRLA 1124
Query: 708 NEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK-- 765
A Q + + LR ++G+ P E LL L ++ +A G+T + + +
Sbjct: 1125 AYQRMAEAQTPEAVHDLRQELRDRFGELPEPAEQLLIWLRIKALALAAGVTSVVTTDEEF 1184
Query: 766 MVGMKTNMNKKVFKM 780
+V + N++ ++
Sbjct: 1185 IVRLPEGANRQRTRL 1199
>gi|345018827|ref|YP_004821180.1| transcription-repair coupling factor [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344034170|gb|AEM79896.1| transcription-repair coupling factor [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 1169
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 257/622 (41%), Positives = 386/622 (62%), Gaps = 20/622 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L G YVVH GIGK+ GI+ ++ D + +Y+ I YA G +PV+Q ++ +Y
Sbjct: 501 LEVGSYVVHVNYGIGKYEGIE-KIKVDGIIR-DYLKIIYAGGDTLFVPVEQLD-LVQKYV 557
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
P T P L+KL + W R K K K A++ + DL++LY R K + P P
Sbjct: 558 GP--TDNPPKLNKLG-GSEWLRAKRKAKKAVEDLAKDLIQLYAKRQMVKGHAFSPDTPWQ 614
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF QFPYE T DQ + +++ D+ E++ PMDRL+CGDVG+GKTEVALRA F V+ G
Sbjct: 615 KEFEEQFPYEETEDQLRCIKEIKEDM-EKDRPMDRLLCGDVGYGKTEVALRAAFKAVADG 673
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA QH+ ERF ++P +K+ +LSRF++ E+ + + + G ++IIV
Sbjct: 674 KQVAFLCPTTILAYQHYTNFIERFKEFP-VKIEMLSRFRTPKEQAQIIKGLAEGTIDIIV 732
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL + V + +LGLL++DEEQRFGV KEKI K ++DVLTLSATPIPRTL+++L
Sbjct: 733 GTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPRTLHMSLI 792
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ PP +R P++T++ F++E + AI E+ RGGQV++V R+ G+E+
Sbjct: 793 GIRDMSVLENPPEDRFPVETYVMEFNEELIKDAILREIGRGGQVYFVYNRVNGIEKMASL 852
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
++ PG +A+AHGQ QLE+ M F G +L+ T I+E+GLDI N NTIIV D
Sbjct: 853 VKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDA 912
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E E G GF++A +
Sbjct: 913 DKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMR 972
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV--QIDININ 689
D+ IRG G + G +Q G + +G DL+ ++L E++ + P + + IDI +N
Sbjct: 973 DLEIRGAGNLLGAEQHGHINAIGYDLYLKLLEEAIRNLKGEA----PKEEITTTIDIKVN 1028
Query: 690 PRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+ S YI +EM + A + +D +++ +E L ++G P +E LL+ Y+
Sbjct: 1029 AYIDSSYIEDENLRLEMYKKIASIESRED---MIEISEELVDRFGDYPKPVEALLEIAYL 1085
Query: 749 RRMAADIGITKIYASGKMVGMK 770
+ +A+ + IT+I G +V +K
Sbjct: 1086 KAIASQLYITEITEKGNVVILK 1107
>gi|239637489|ref|ZP_04678463.1| transcription-repair coupling factor [Staphylococcus warneri L37603]
gi|239596934|gb|EEQ79457.1| transcription-repair coupling factor [Staphylococcus warneri L37603]
Length = 1169
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 257/630 (40%), Positives = 400/630 (63%), Gaps = 27/630 (4%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
K+ Y L GDYVVH G+G+++G++ +V + +Y+ ++Y G +L PV Q
Sbjct: 489 KIKSYQDLNVGDYVVHVHHGVGRYLGVETLEVGEQHR---DYIKLQYK-GTDQLFVPVDQ 544
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
+ + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R +
Sbjct: 545 MDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKQR--EMSV 598
Query: 264 PYPKNPAIAE---FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320
Y P E F FPYE TPDQ K+ +++ D+ ERE PMDRL+CGDVG+GKTEVA
Sbjct: 599 GYQFGPDTEEQSTFELDFPYELTPDQSKSIEEIKGDM-ERERPMDRLLCGDVGYGKTEVA 657
Query: 321 LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380
+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF+S E +E +
Sbjct: 658 VRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLISRFRSTKEVKETKE 716
Query: 381 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSAT 440
+K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+AT
Sbjct: 717 GLKSGYVDIVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTLKNNVDVLTLTAT 776
Query: 441 PIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLP 500
PIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 777 PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYN 836
Query: 501 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+
Sbjct: 837 KVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDV 896
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 897 PNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFT 956
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VDEHCVISV 677
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ + E V
Sbjct: 957 ELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEETP-DV 1015
Query: 678 PYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPY 737
P V++++N++ LP+EYI + + +E+ + K ++ LM + L ++ P
Sbjct: 1016 P--DVEVELNLDAYLPAEYIQNEQAKIEIYKKLRKVESEE--QLMDIKDELIDRFNDYPT 1071
Query: 738 SMEILLKKLYVRRMAADIGITKIYASGKMV 767
+E LL + ++ A GITKI GK +
Sbjct: 1072 EVERLLDIVEIKTHALHAGITKIKDMGKQI 1101
>gi|222152152|ref|YP_002561312.1| transcription-repair coupling factor [Macrococcus caseolyticus
JCSC5402]
gi|222121281|dbj|BAH18616.1| transcription-repair coupling factor [Macrococcus caseolyticus
JCSC5402]
Length = 1166
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 254/636 (39%), Positives = 404/636 (63%), Gaps = 30/636 (4%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
K+ Y L GDYVVH G+G+++G++ V K + +Y+ I+Y G +L PV Q
Sbjct: 488 KIKSYQELNIGDYVVHTHHGVGRYLGVETLLVNK---LHKDYIKIQYK-GTDQLFVPVDQ 543
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
S++ + + +E K P+ L+KL T W++ K + + ++ + +L++LY R ++
Sbjct: 544 MSQV--QKFVGSEDKDPK-LNKLGGT-EWKKTKARVQKNVEDIAEELLKLYQER--ERIE 597
Query: 264 PYPKNPAIAE---FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320
Y P E F FPYEPT DQK++ ++++ D+ E+ PMDRL+CGDVG+GKTEVA
Sbjct: 598 GYQFGPDTEEQENFEMDFPYEPTHDQKQSLIEIKGDM-EKSKPMDRLLCGDVGYGKTEVA 656
Query: 321 LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380
+RA F V GKQ L PT +LA+QH++ + ER YP ++V ++SRF++ E E
Sbjct: 657 IRAAFKAVMDGKQVAFLVPTTILAQQHYETIIERMQDYP-VEVQMMSRFRTTKEVNETKK 715
Query: 381 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSAT 440
+K G ++I+VGTH LLG +VY +LGLL+VDEEQRFGV KEKI + K +VDVLTL+AT
Sbjct: 716 GLKSGFVDIVVGTHKLLGKDIVYKDLGLLIVDEEQRFGVTHKEKIKALKTNVDVLTLTAT 775
Query: 441 PIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLP 500
PIPRTL+++L G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 PIPRTLHMSLLGVRDLSVIETPPENRFPVQTYVLEYQHNFIKEAMERELSRNGQVFYLYN 835
Query: 501 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
R+ + + + L+ P IA+AHGQ R+LEETM F G IL+ T I+E+G+D+
Sbjct: 836 RVATIYQKAEQLEMMMPDARIAVAHGQMSERELEETMLGFINGEYDILVTTTIIETGVDV 895
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
NANT+I++D +FGL+QLYQLRGRVGR+++ ++AY + +L++ A +RL A++E
Sbjct: 896 PNANTLIIEDADRFGLSQLYQLRGRVGRSNRISYAYFLHAPNKVLTEVAEQRLQAIKEFT 955
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VDEHCVISV 677
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ EML +++++ + E +V
Sbjct: 956 ELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGYDLYSEMLQQAVNEKRGIKEEE--TV 1013
Query: 678 PYKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEP 736
P ++ID+ I+ +P+EYI + +E + EQ+ L+ + + +YG+ P
Sbjct: 1014 P--QLEIDVEIDAYIPAEYIREEQAKIEFYKKLRSVTTEQE---LIDVQDEMTDRYGEYP 1068
Query: 737 YSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTN 772
+++ L+K + ++ A GI ++ +GK + ++ +
Sbjct: 1069 EAVDHLMKIVEIKVNALSFGIVQVRDTGKSIELEAS 1104
>gi|414161807|ref|ZP_11418058.1| transcription-repair-coupling factor [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410875168|gb|EKS23094.1| transcription-repair-coupling factor [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 1172
Score = 457 bits (1176), Expect = e-125, Method: Compositional matrix adjust.
Identities = 252/624 (40%), Positives = 393/624 (62%), Gaps = 27/624 (4%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--PVKQASR 206
L+ GDYVVH G+G+++G++ DV +D Y+ I+Y G +L PV Q +
Sbjct: 496 DLKVGDYVVHVHHGVGRYLGVETLEVGDVHRD------YIKIQYK-GTDQLFVPVDQMDQ 548
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPY 265
+ +Y + +E K P+ L+KL T W++ K K + +++ + +L+ELY R + +
Sbjct: 549 -VQKY-VASEDKTPK-LNKLG-GTEWKKTKAKVQQSVEDIADELIELYREREMAEGHQFG 604
Query: 266 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
P EF FPY+ T DQ K+ +++ D+ E+E PMDRL+CGDVG+GKTEVALRA F
Sbjct: 605 PDTEQQHEFEMDFPYDLTADQAKSIDEIKEDM-EKERPMDRLLCGDVGYGKTEVALRAAF 663
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
V GKQ L PT +LA+QH++ + ER +P + + L+SRF++ E +E +K G
Sbjct: 664 KAVMEGKQVAFLVPTTILAQQHYETLLERMQDFP-VNIQLMSRFRTPKEIKETKQGLKDG 722
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++I+VGTH LL V Y +LGLLVVDEEQRFGV+ KE+I + K +VDVLTL+ATPIPRT
Sbjct: 723 IIDIVVGTHKLLAKDVKYKDLGLLVVDEEQRFGVRHKERIKTLKTNVDVLTLTATPIPRT 782
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L++++ G RD S+I TPP R P++T++ + + A++ EL RGGQ FY+ R++ +
Sbjct: 783 LHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELARGGQAFYLYNRVQSI 842
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
E + LQ P I +AHG+ R+LE+TM F G IL+ T I+E+G+D+ NANT
Sbjct: 843 YEKREQLQMLMPDATIGVAHGRMTERELEDTMIGFVNGEYDILVTTTIIETGVDVPNANT 902
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
+I+++ +FGL+QLYQLRGRVGR+ + + Y +P +LS+ A ERL A++E ELG G
Sbjct: 903 LIIEEADRFGLSQLYQLRGRVGRSSRVGYTYFLHPTNKVLSETAEERLQAIKEFTELGSG 962
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS--VQ 683
F++A +D+ IRG G + G+QQ G + +VG DL+ +ML E+ V+E I ++ ++
Sbjct: 963 FKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEA---VNEKRGIKQESETPEIE 1019
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
I++NI+ LP+ YI + ++ +E+ + + ++ LM + L ++ P +E LL
Sbjct: 1020 IELNIDAYLPTSYIPNEQSKIEIYKKLRQIETEN--ELMDIKDELIDRFNDYPVEVERLL 1077
Query: 744 KKLYVRRMAADIGITKIYASGKMV 767
+ +R A +G+T+I +GK +
Sbjct: 1078 DIVEIRIHALHVGVTRIKDTGKAI 1101
>gi|410669120|ref|YP_006921491.1| transcription-repair coupling factor [Thermacetogenium phaeum DSM
12270]
gi|409106867|gb|AFV12992.1| transcription-repair-coupling factor Mfd [Thermacetogenium phaeum DSM
12270]
Length = 1165
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 267/618 (43%), Positives = 376/618 (60%), Gaps = 22/618 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI---KFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLY 209
L GD+VVH GIG+++GI + D +K +Y+ + YA G +PV Q ++
Sbjct: 500 LTPGDFVVHIHHGIGRYLGICEKEMDGKKR-----DYLELAYAGGDRLYVPVDQVD-LIS 553
Query: 210 RYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNP 269
RY P E PR LS+L T W R K + K ++++ DL+ LY R + P Y +P
Sbjct: 554 RYGGP-EGAVPR-LSRLGGTD-WNRLKQRVKKRLRELAEDLIALYSER--SRTPGYAFSP 608
Query: 270 AIA---EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
EF FPYE TPDQ +A +V+ D+ E+ PMDRLICGDVGFGKTEVA+RA F
Sbjct: 609 DTVWQREFEELFPYEETPDQLQAIKEVKADM-EKPRPMDRLICGDVGFGKTEVAIRAAFK 667
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
V GKQ VL PT VLA+QH+ ERFS+YP I+V +LSRF++ AE++ + + G
Sbjct: 668 AVQDGKQVAVLVPTTVLAQQHYLTFKERFSRYP-IRVEMLSRFRTPAEQKAIVADLGKGL 726
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
+++I+GTH LL + VV+ +LGLLV+DEEQRFGV KEKI K SVDVLT++ATPIPRTL
Sbjct: 727 VDVIIGTHRLLSADVVFKDLGLLVIDEEQRFGVAHKEKIKMLKTSVDVLTMTATPIPRTL 786
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
++L G RD S+I TPP +RLP++T++ +S + V AI E+ RGGQVFYV R++ +
Sbjct: 787 QMSLGGVRDLSVIETPPEDRLPVQTYVLEYSPDLVRDAILREIQRGGQVFYVHNRVETIA 846
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
+LQ+ P +AHGQ +LEE M +F LICT I+ESGLD NANT+
Sbjct: 847 RVAHYLQELVPEATFRVAHGQMREDELEEVMWEFLNRRFDCLICTTIIESGLDFPNANTL 906
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
IV++ FGLAQLYQLRGRVGR+++ A+AY + +LS+QA +RL A++E E G GF
Sbjct: 907 IVENADSFGLAQLYQLRGRVGRSNRLAYAYFTFRGDKVLSEQAEKRLRAIQEFTEFGSGF 966
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 686
+LA +D+ IRG G I G +Q G + VG DL+ +L E++ +V V D+
Sbjct: 967 KLALRDLEIRGAGNILGPEQHGHMAAVGFDLYNRLLQEAVQEVKGKPVPERKAAPPLFDL 1026
Query: 687 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
++ LP YI +E+ A +D + + E +R ++G+ P L
Sbjct: 1027 RVDSYLPDSYIGDPRQKVEIYRRL--ALAEDTAGVEELAEEVRDRFGEMPEPAVNLFDLA 1084
Query: 747 YVRRMAADIGITKIYASG 764
VR A ++G+ ++ +G
Sbjct: 1085 RVRARARELGMREVQHAG 1102
>gi|328948120|ref|YP_004365457.1| transcription-repair coupling factor [Treponema succinifaciens DSM
2489]
gi|328448444|gb|AEB14160.1| transcription-repair coupling factor [Treponema succinifaciens DSM
2489]
Length = 1246
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 252/642 (39%), Positives = 392/642 (61%), Gaps = 17/642 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L GDY+VH GIG F GI + K +Y+ +EYAD +A +P++Q + M+ RY
Sbjct: 583 LTPGDYIVHVNYGIGLFKGI--ERVKAMGTERDYIKLEYADEEIAFVPIEQVN-MVQRY- 638
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+ +E ++PR L ++ + W RK K + ++++ L++LY R + P+PK+
Sbjct: 639 IGSENEKPR-LDRIG-SKNWSARKAKVQQKVEEIAEKLIDLYSKRQASRGFPFPKDTEWN 696
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
A F A FPYE TPDQ A +++ D+ E+ PMDRL+CGDVG+GKTE+A+RA F V G
Sbjct: 697 AAFEAAFPYEDTPDQFSATQEIKADM-EKPVPMDRLVCGDVGYGKTEIAMRAAFKAVMGG 755
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ LAPT +LA+QHF+ ERF +P + + LSRF S E+++ + I G ++II+
Sbjct: 756 KQVAFLAPTTILAEQHFENSQERFKNFP-VTIAQLSRFVSPTEQKKIISKIASGEIDIII 814
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L V++ NLGL+++DEEQRFGVK KEK+ + K ++D L +SATPIPRTL+++L
Sbjct: 815 GTHRILQKDVIFKNLGLMIIDEEQRFGVKDKEKLKTLKTNIDCLAMSATPIPRTLHMSLL 874
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD SL++TPP R PI+T + ++ EKV AI+ E+ RGGQVFY+ R++ LEE
Sbjct: 875 KIRDMSLLTTPPQNRQPIETAIEEYNDEKVARAIRNEVQRGGQVFYLHNRVETLEETRLK 934
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L+ P + + AHG+ S +L++ +F G IL+ T I+E+G+DI N NTII+
Sbjct: 935 LENLVPEMLVETAHGKMTSEELDDIFRRFKMGGFHILVATTIIENGIDIPNVNTIIIDRA 994
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+G++QLYQLRGRVGR+D++A+AYLFYP LS+ A++RL + + ELG GF++A K
Sbjct: 995 DMYGVSQLYQLRGRVGRSDRKAYAYLFYPQNKALSEVAMKRLQVISDFTELGSGFKIAMK 1054
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
DM IRG G + G+ Q+G+V VG +++ +L ++ ++ + + P + V +++
Sbjct: 1055 DMEIRGAGNLLGKDQSGEVYAVGFEMYLTLLNSAIERLS-NSDWTAP-EEVLLELEYTGF 1112
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
+P YI + ME+ + QD L E L ++G P + LL +R +
Sbjct: 1113 IPDTYIKDTQTKMELYKKIASVQTQD--SLNSVWEELFDRFGPIPDEVSSLLSLAKIRII 1170
Query: 752 AADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNS 793
+ I+ + +V ++ + KV K+ ID + + +S
Sbjct: 1171 CNKLSISSLKEKKGIVQVEFS---KVSKVNIDKLLGLIKTSS 1209
>gi|410656908|ref|YP_006909279.1| Transcription-repair coupling factor [Dehalobacter sp. DCA]
gi|410659946|ref|YP_006912317.1| Transcription-repair coupling factor [Dehalobacter sp. CF]
gi|409019263|gb|AFV01294.1| Transcription-repair coupling factor [Dehalobacter sp. DCA]
gi|409022302|gb|AFV04332.1| Transcription-repair coupling factor [Dehalobacter sp. CF]
Length = 1189
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 265/679 (39%), Positives = 409/679 (60%), Gaps = 16/679 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYRY 211
L+ GDYVVH GIGKF GI+ ++ D + +Y I YA G KL P+ Q ++L +Y
Sbjct: 506 LKPGDYVVHFYHGIGKFTGIE-TIEVDG-IEKDYFAIRYA-GEDKLYVPLDQL-QLLQKY 561
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
E+ P+ L+KL + W + K + + A+++M ++L+ELY R YP++
Sbjct: 562 LGTEESSTPK-LNKL-NGNEWNKAKARAQGAVKEMAINLLELYAKREGAVGFAYPEDSHW 619
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF +FPYE TPDQ ++ ++V++D+ + PMDRL+CGDVG+GKTEVALRA F V +
Sbjct: 620 QKEFEDRFPYEETPDQLQSIMEVKKDMM-KSRPMDRLLCGDVGYGKTEVALRAAFKAVIS 678
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ V+ PT +LA+QH++ ERF YP +K+ +LSRF++ E+++ + +K G L+I+
Sbjct: 679 GKQVAVMVPTTILAQQHYNTFRERFMDYP-VKIEMLSRFRTAKEQKQIIQSLKDGSLDIV 737
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
VGTH LL V + +LGLLVVDEEQRFGV KE+I + K +VDVLTLSATPIPRTL+++L
Sbjct: 738 VGTHRLLSEGVSFKDLGLLVVDEEQRFGVAHKERIKTLKTNVDVLTLSATPIPRTLHMSL 797
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+I TPP +R P++T ++ F+ + V AI+ EL RGGQ F+V R++ L+ +
Sbjct: 798 VGLRDMSVIMTPPEDRFPVQTFVAEFNADLVRDAIRRELYRGGQAFFVHNRVETLDRVVR 857
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L P + HGQ QLE+ M F + ILICT I+E+GLD+ N NT+IV
Sbjct: 858 LLNLIIPEARCGVVHGQMSETQLEKEMISFLEKEKDILICTTIIETGLDMPNVNTLIVDG 917
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+FGL+QLYQLRGRVGR++++A+AY Y + +L+++A +RL + E E G GF++A
Sbjct: 918 ADKFGLSQLYQLRGRVGRSNRKAYAYFLYQPQKILTEEAEKRLTTIREFTEFGSGFKIAM 977
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G G +Q G + ++G L+ +ML E++ ++ V V IDI +
Sbjct: 978 RDLEIRGAGNFIGGEQHGHLASIGFSLYVKMLKEAVQQLRGETVEEVAEPV--IDIQVKA 1035
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
LP EYI + + + ++ L F + L ++G P +E L K + +R
Sbjct: 1036 LLPDEYIVDKQIKATLYQRMLGISSEE--HLSDFLDELVDRFGNPPDEVENLAKIIRIRM 1093
Query: 751 MAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELP 810
A +G+ ++ + + ++ + ++ + S+ ++ G+Q EL L L
Sbjct: 1094 KAKQLGLEQVVQHKQNISLRFAADPEISGEQLMSIAAKFPYPLSFAAGEQGNLELNLRL- 1152
Query: 811 REQLLNWIFQCLAELYASL 829
R + IF+ + +L+ L
Sbjct: 1153 RVSSIEDIFKAIFKLFDIL 1171
>gi|320537605|ref|ZP_08037541.1| transcription-repair coupling factor [Treponema phagedenis F0421]
gi|320145523|gb|EFW37203.1| transcription-repair coupling factor [Treponema phagedenis F0421]
Length = 1148
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 255/656 (38%), Positives = 399/656 (60%), Gaps = 17/656 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L GDYVVH GIG F GI + + +Y+ + YA+ +P++QA+ ++ RY
Sbjct: 485 LNPGDYVVHVNYGIGLFKGI--ERVRSGGTERDYINLLYANEETVFIPIEQAN-LVQRY- 540
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ NE + PR + + +WE RK K K +++ + L++LY R + + P +
Sbjct: 541 IGNEGEAPRL--DILGSKSWENRKNKVKKSVEDIANKLIDLYSRRKAARGHAFQPDDEWQ 598
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
F A FPYE T DQ +V+ D+ E+ PMDRL+CGDVG+GKTEVA+RA F + G
Sbjct: 599 LAFEAAFPYEETDDQLTCVAEVKADM-EKPVPMDRLVCGDVGYGKTEVAMRAAFKAIMGG 657
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L+PT +LA+QHF+ + ERF +P + V +SRF +++E+++ L+ +K+G ++I+V
Sbjct: 658 KQVAFLSPTTILAEQHFETLDERFKNFP-VTVARMSRFITRSEQKKILEQLKNGDIDILV 716
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH ++ VV+ +LGL+++DEEQRFGVK KE++ K +VD L LSATPIPRTL+++L
Sbjct: 717 GTHRIIQKDVVFKDLGLMIIDEEQRFGVKDKERLKQMKTNVDCLALSATPIPRTLHMSLL 776
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD SL++TPP R PI+T + F EKV +AI+ E++RGGQVFY+ R++ L+E
Sbjct: 777 KIRDMSLLTTPPQNRRPIETVIQEFDPEKVAAAIRQEVERGGQVFYLHNRVETLDETARM 836
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQ P V I AHGQ S +LE+ ++F G +LI T I+E+G+DI NANTII+
Sbjct: 837 LQNLVPEVLIDSAHGQMNSDELEDIFKRFNMGGFHVLIATTIIENGIDIPNANTIIIDRA 896
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+G++QLYQLRGRVGR+DK+A+AYL YP LS+ A++RL + + ELG GF++A K
Sbjct: 897 DMYGVSQLYQLRGRVGRSDKKAYAYLLYPKDRALSEIAMKRLQVISDFTELGSGFKIAMK 956
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
DM IRG G + G +Q+GD+ +VG DL+ +L E++ ++ P + V ++++
Sbjct: 957 DMEIRGAGNLLGREQSGDIYSVGFDLYLRLLEEAIERL--QNADYEPPQEVLVELDYTGF 1014
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
+P YI+ E ME+ + AA L + + ++G+ P +E LL ++
Sbjct: 1015 IPDSYISVPETKMEIYKKI--AAVHTSEGLDRMYAEIIDRFGQPPEEVESLLALAEIKIT 1072
Query: 752 AADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLL 807
+ I+ + G V ++ +V ++ ID + + +++ D K +L+
Sbjct: 1073 CNKLAISSLKERGGRVNIEF---MRVSRISIDKLLRMIKQSAGRVRLDSAKPNVLI 1125
>gi|383790666|ref|YP_005475240.1| transcription-repair coupling factor Mfd [Spirochaeta africana DSM
8902]
gi|383107200|gb|AFG37533.1| transcription-repair coupling factor Mfd [Spirochaeta africana DSM
8902]
Length = 1134
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 246/610 (40%), Positives = 391/610 (64%), Gaps = 15/610 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L GD VVH GIG+F GI+ + +Y+ +EYA D +P++Q + ++ RY
Sbjct: 470 LEPGDLVVHVNYGIGRFRGIQ--RIRAGGNERDYIHLEYAGDEFIYIPIEQVN-LIQRY- 525
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ + PR L K+ + WE RK+K + +++ + L++LY R + + +P +
Sbjct: 526 IGQQGSAPR-LDKIGGKS-WENRKSKVRRSVEDLAERLVQLYSRRKQARGYAFPPDTDWQ 583
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A FPYE T DQ + +V+ D+ E+ +PMDRL+CGDVGFGKTE+ALRA F V+AG
Sbjct: 584 LEFEASFPYEETLDQLRCIEEVKADM-EQPSPMDRLVCGDVGFGKTEIALRAAFKSVTAG 642
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +LAPT +LA+QHF+ + ER +++P I+ G+LSRF + A++++ + +K G +++++
Sbjct: 643 KQVALLAPTTILAEQHFENLEERLARFP-IRTGMLSRFVTPAQQKKVIAGLKSGEIDLVI 701
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L V + +LGL+VVDEEQRFGVK KE++ K +VD LTLSATPIPRTL+++L
Sbjct: 702 GTHRILSRDVEFRDLGLIVVDEEQRFGVKHKERLKEMKTTVDSLTLSATPIPRTLHMSLL 761
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD S++ TPP R+PI+T + F ++ V +AI+ E++RGGQV+++ R++ LE F
Sbjct: 762 KIRDMSVLQTPPTNRMPIETVIREFDEDIVAAAIRKEIERGGQVYFLHNRVETLEYVRKF 821
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+++ P V + +AHGQ + QLE+ M +F GA ++L+ T+I+E+G+DI N NTII+
Sbjct: 822 IEKLVPEVMVDVAHGQMTAHQLEDIMHRFIHGAFQVLVATSIIENGIDIPNVNTIIIDRA 881
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FG++QLYQLRGRVGR+D+ A+AYL YP+ LS+ A++RL + + ELG GF++A K
Sbjct: 882 DNFGISQLYQLRGRVGRSDRSAYAYLLYPEDRPLSEIAMKRLQVISDHTELGSGFKVAMK 941
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ +RG G + G QQ+GD+ +VG DL+ +L E++ ++ + + V +++
Sbjct: 942 DLEVRGAGNLLGPQQSGDILSVGFDLYLRLLDEAIRRLQSEGDY-IEDQEVYLELEYTGF 1000
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWC-LMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+P EYI+ +PME + +K A + L T L ++G P + LL +R
Sbjct: 1001 IPDEYID---DPMEKMEVYKKIASINTDTELATVTTELEDRFGPLPDEVHSLLSLAEIRI 1057
Query: 751 MAADIGITKI 760
+ + I+ +
Sbjct: 1058 ICRRLHISSL 1067
>gi|314932725|ref|ZP_07840095.1| transcription-repair coupling factor [Staphylococcus caprae C87]
gi|313654555|gb|EFS18307.1| transcription-repair coupling factor [Staphylococcus caprae C87]
Length = 1169
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 253/628 (40%), Positives = 394/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ERE PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGEDTAEQSAFEHDFPYELTPDQGKSIEEIKGDM-ERERPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER YP +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDYP-VEIQLVSRFRTTKEVRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPEANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ +
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEETPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
V++++N++ LP+EYI + + +E+ + K +D L + L ++ P +
Sbjct: 1016 PEVEVELNLDAYLPAEYIQNEQAKIEIYKKLRKVETED--QLFDVKDELIDRFNDYPVEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A GIT I GK V
Sbjct: 1074 ERLLDIVEIKVHALHAGITLIKDKGKTV 1101
>gi|223044420|ref|ZP_03614453.1| transcription-repair coupling factor [Staphylococcus capitis SK14]
gi|222442209|gb|EEE48321.1| transcription-repair coupling factor [Staphylococcus capitis SK14]
Length = 1169
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 253/628 (40%), Positives = 394/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ERE PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGEDTAEQSAFEHDFPYELTPDQGKSIEEIKGDM-ERERPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER YP +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDYP-VEIQLVSRFRTTKEVRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPEANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ +
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEETPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
V++++N++ LP+EYI + + +E+ + K +D L + L ++ P +
Sbjct: 1016 PEVEVELNLDAYLPAEYIQNEQAKIEIYKKLRKVETED--QLFDVKDELIDRFNDYPVEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A GIT I GK V
Sbjct: 1074 ERLLDIVEIKVHALHAGITLIKDKGKTV 1101
>gi|418324793|ref|ZP_12936019.1| transcription-repair coupling factor [Staphylococcus pettenkoferi
VCU012]
gi|365224116|gb|EHM65383.1| transcription-repair coupling factor [Staphylococcus pettenkoferi
VCU012]
Length = 1170
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 250/624 (40%), Positives = 396/624 (63%), Gaps = 15/624 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L+ GDY+VH G+G+++G+ + + + + +Y+ ++Y G +L PV Q
Sbjct: 490 KIKSYQDLKVGDYIVHVHHGVGRYLGV--ETLEVNGIHKDYIKLQYK-GTDQLFVPVDQM 546
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRP 263
+ + +Y + +E K PR L+KL + W++ K K + +++ + +L+ELY R + Q
Sbjct: 547 DQ-VQKY-VASEDKSPR-LNKLG-GSEWKKTKAKVQQSVEDIADELIELYKEREMAQGHK 602
Query: 264 PYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
P P +F FP+E TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 603 FGPDTPEQHDFEMDFPFELTPDQAKSIDEIKGDM-ERTKPMDRLLCGDVGYGKTEVAVRA 661
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P I++ L+SRF++ E ++ + +K
Sbjct: 662 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-IEIQLMSRFRTSKEIKQTKEGLK 720
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G+++I+VGTH LLG V Y +LGLLVVDEEQRFGV+ KEKI K +VDVLTL+ATPIP
Sbjct: 721 SGYVDIVVGTHKLLGKTVEYKDLGLLVVDEEQRFGVRHKEKIKQLKTNVDVLTLTATPIP 780
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 781 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEQNSNFIKEALERELSRDGQVFYLYNQVQ 840
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 841 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEFDILVTTTIIETGVDVPNA 900
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 901 NTLIIENADRFGLSQLYQLRGRVGRSSRIGYAYFLHPMNKVLTETAEDRLQAIKEFTELG 960
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ+G + +VG DL+ +ML E++++ V+
Sbjct: 961 SGFKIAMRDLNIRGAGNLLGKQQSGFIDSVGFDLYSQMLEEAVNEKRGIKEEKPDAPEVE 1020
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
I++NI+ LP++YI + + +E+ + + + + L + L ++ + P +E LL
Sbjct: 1021 IELNIDAYLPAQYIPNEQAKIEIYKKLRQL--ETMEQLRDVKDELIDRFNEYPPEVERLL 1078
Query: 744 KKLYVRRMAADIGITKIYASGKMV 767
+ ++ A GIT I GK V
Sbjct: 1079 DMMEIKVYALHAGITSIKEQGKQV 1102
>gi|242371667|ref|ZP_04817241.1| transcription-repair coupling factor [Staphylococcus epidermidis
M23864:W1]
gi|242350616|gb|EES42217.1| transcription-repair coupling factor [Staphylococcus epidermidis
M23864:W1]
Length = 1169
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 251/628 (39%), Positives = 395/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ERE PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYKYGEDTAEQSAFEHDFPYELTPDQDKSIEEIKSDM-ERERPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E +E
Sbjct: 657 AVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLVSRFRTTKEIKETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ +
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEETPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
V++++N++ LP+EYI + + +E+ + K +D L + L ++ P +
Sbjct: 1016 PEVEVELNLDAYLPAEYIQNEQAKIEIYKKLRKVETED--QLFDVKDELIDRFNDYPVEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A GIT I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGITLIKDKGKTI 1101
>gi|374294799|ref|YP_005044990.1| transcription-repair coupling factor Mfd [Clostridium clariflavum DSM
19732]
gi|359824293|gb|AEV67066.1| transcription-repair coupling factor Mfd [Clostridium clariflavum DSM
19732]
Length = 1177
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 262/676 (38%), Positives = 406/676 (60%), Gaps = 17/676 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GD+VVH+ GIGK++GI + V+ + +Y+ I+Y DG A L V + L +
Sbjct: 511 LSIGDFVVHQFHGIGKYIGIEQLTVE---NIKKDYLKIQYQDG-AYLYVPTSQLDLIQKY 566
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+ +E K P+ LSKL T W + K K K +I ++ +L++LY R K + K+
Sbjct: 567 IGSEGKTPK-LSKLGGTD-WLKTKAKTKESIMELAGELIKLYAMRESSKGHAFGKDTIWQ 624
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F QFPY+ T DQ + +++RD+ E + PMDRL+CGDVG+GKTEVA+RAIF V G
Sbjct: 625 KQFEEQFPYQETEDQLRCIEEIKRDM-ESDKPMDRLLCGDVGYGKTEVAIRAIFKAVMDG 683
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT VLA+QH++ ER +P +KV ++SRF++ AE++ L +K G +++++
Sbjct: 684 KQVAYLVPTTVLAQQHYNNFKERMKDFP-VKVEMVSRFRTPAEQKRILRDVKAGLVDVLI 742
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL VV+ +LGLLV+DEEQRFGV KEK+ + +VDVLTL+ATPIPRTL+++L
Sbjct: 743 GTHRLLQKDVVFKDLGLLVIDEEQRFGVMHKEKLKKLRANVDVLTLTATPIPRTLHMSLI 802
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G +D S I PP ER P++T++ +++E + AI E+ R GQVFY+ R++ +
Sbjct: 803 GIKDISTIEDPPEERYPVQTYVMEYNEEVIKEAINREMARNGQVFYLYNRVRSINVKAAE 862
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+++ P IA+AHGQ +LE+ M +F G IL+CT I+ESG+D+ N NTIIV+D
Sbjct: 863 IKKMVPDARIAVAHGQMDETELEDIMFRFINGEYDILVCTVIIESGIDMPNVNTIIVEDS 922
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY+ Y +LS+ A +RL A++E E G GF++A +
Sbjct: 923 DKMGLSQLYQLRGRVGRSNRMAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAMR 982
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
DM IRG G + G QQ G + +VG D++ +L E++S++ V V ID+N++
Sbjct: 983 DMQIRGAGNLLGAQQHGHIDSVGYDMYCRLLAEAISELKGQSVQEEV--EVSIDVNVSAY 1040
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
+ S YI+ +EM + A+ QD ++ + L +YG P + L+K +++ +
Sbjct: 1041 IDSSYISSENEKIEMYKKI--ASVQDEQDVLDVEDELMDRYGNIPTPVSNLMKIAHIKAL 1098
Query: 752 AADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ--IKAELLLEL 809
A G + + + + ++ K + E HR L F + ++
Sbjct: 1099 ALKCGFSSVQEKNGSIIFQY-IDSKYVNFEVIGKIMEKHRRKLLFNASNKPYITYRITDI 1157
Query: 810 PREQLLNWIFQCLAEL 825
RE LL+ I L ++
Sbjct: 1158 KRESLLDNITILLQDI 1173
>gi|385800628|ref|YP_005837032.1| transcription-repair coupling factor [Halanaerobium praevalens DSM
2228]
gi|309389992|gb|ADO77872.1| transcription-repair coupling factor [Halanaerobium praevalens DSM
2228]
Length = 1160
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 255/612 (41%), Positives = 380/612 (62%), Gaps = 20/612 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+SGDYVVH+ GIGK++G+K ++Q +Y+ ++YA G KL V L +
Sbjct: 497 LKSGDYVVHENHGIGKYLGVKTLEIQNKHK---DYLVLKYA-GEDKLYVPTEKIDLVQKY 552
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+ ++ P+ L KL ++ W++ K K + +++KM V L+ELY R +PK+
Sbjct: 553 IGSDAGNPK-LYKLG-SSDWKKVKEKVQQSVEKMAVGLLELYAERETLTGYQFPKDDVWQ 610
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FP+E TPDQKKA ++ D+ E PMDRL+CGDVG+GKTEVA+RA F A
Sbjct: 611 KEFEDSFPFEETPDQKKAISALKSDM-ESIKPMDRLLCGDVGYGKTEVAIRAAFKAALAS 669
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT +LA+QH++ SER ++P ++VG+LSRF + AE+ + L + G ++I++
Sbjct: 670 KQTAVLVPTTILAQQHYNTFSERIEEFP-VRVGILSRFNTAAEQRKTLKRLIKGEIDILI 728
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V++ +LGLL++DEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++AL
Sbjct: 729 GTHRLLSKDVIFADLGLLIIDEEQRFGVTHKEKLKDLKRNVDVLTLTATPIPRTLHMALV 788
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD SLI TPP R PI+T + + E + SAI+ EL R GQ+++V R+K +E+
Sbjct: 789 GVRDMSLIETPPENRYPIRTFIKEDNSELITSAIRRELARNGQIYFVHNRVKDIEKTAGK 848
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQ+ P IA+AHGQ ++LE+ M F Q IL+CT I+E+GLDI N NTII+
Sbjct: 849 LQKLMPEAKIAVAHGQMNEKRLEKIMYDFYQQKFDILVCTTIIETGLDIPNVNTIIINHA 908
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR ++ A+AYL Y +L++ A +RL A++E LG GF++A +
Sbjct: 909 DRMGLSQLYQLRGRVGRTNRIAYAYLLYEKDRILAEVAEKRLEAIKEFSSLGSGFKIAMR 968
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEML---FESLSKVDEHCVISVPYKSVQIDINI 688
D+ IRG G + G +Q+G + VG L+ ++L E L + I V++D+ +
Sbjct: 969 DLEIRGAGNLLGPEQSGHIAAVGFSLYTKLLEGTIEELKGEQQEKNI-----EVEVDLKL 1023
Query: 689 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+ +P EYI + +E+ + KA + L E + R +G+ P + L+ +
Sbjct: 1024 DAYIPDEYIKYEARKIEIYKKI-KAIRNEADALDTIDELIDR-FGEPPLEVMRLINISRL 1081
Query: 749 RRMAADIGITKI 760
+ +AA++ I I
Sbjct: 1082 KFLAAELNIELI 1093
>gi|417906926|ref|ZP_12550704.1| transcription-repair coupling factor [Staphylococcus capitis VCU116]
gi|341597127|gb|EGS39695.1| transcription-repair coupling factor [Staphylococcus capitis VCU116]
Length = 1169
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 252/628 (40%), Positives = 394/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ERE PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGEDTAEQSAFEHDFPYELTPDQGKSIEEIKGDM-ERERPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F + GKQ L PT +LA+QH++ + ER YP +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAIMEGKQVAFLVPTTILAQQHYETLIERMQDYP-VEIQLVSRFRTTKEVRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPEANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ +
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEETPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
V++++N++ LP+EYI + + +E+ + K +D L + L ++ P +
Sbjct: 1016 PEVEVELNLDAYLPAEYIQNEQAKIEIYKKLRKVETED--QLFDVKDELIDRFNDYPVEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A GIT I GK V
Sbjct: 1074 ERLLDIVEIKVHALHAGITLIKDKGKTV 1101
>gi|167039252|ref|YP_001662237.1| transcription-repair coupling factor [Thermoanaerobacter sp. X514]
gi|300913892|ref|ZP_07131209.1| transcription-repair coupling factor [Thermoanaerobacter sp. X561]
gi|307725423|ref|YP_003905174.1| transcription-repair coupling factor [Thermoanaerobacter sp. X513]
gi|166853492|gb|ABY91901.1| transcription-repair coupling factor [Thermoanaerobacter sp. X514]
gi|300890577|gb|EFK85722.1| transcription-repair coupling factor [Thermoanaerobacter sp. X561]
gi|307582484|gb|ADN55883.1| transcription-repair coupling factor [Thermoanaerobacter sp. X513]
Length = 1165
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 260/627 (41%), Positives = 390/627 (62%), Gaps = 21/627 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L G YVVH GIGK+ GI+ ++ D V +Y+ I YA G +PV+Q ++ +Y
Sbjct: 501 LEIGSYVVHVNYGIGKYEGIE-KIKVDGIVR-DYLKIIYAGGDTLFVPVEQLD-LVQKYV 557
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
P T P L+KL + W + K K K A++ + DL++LY R K + P P
Sbjct: 558 GP--TDNPPKLNKLG-GSEWLKAKRKAKKAVEDLAKDLIQLYAKRQMVKGHAFSPDTPWQ 614
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF QFPYE T DQ + +++ D+ E++ PMDRL+CGDVG+GKTEVALRA F V+ G
Sbjct: 615 KEFEEQFPYEETEDQLRCIKEIKEDM-EKDRPMDRLLCGDVGYGKTEVALRAAFKAVADG 673
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA QH+ ERF ++P +K+ +LSRF++ E+ + + + G+++IIV
Sbjct: 674 KQVAFLCPTTILAYQHYANFIERFKEFP-VKIEMLSRFRTPKEQSKIIKELAEGNIDIIV 732
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL + + + +LGLL++DEEQRFGV KEKI K ++DVLTLSATPIPRTL+++L
Sbjct: 733 GTHRLLQNDIKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPRTLHMSLI 792
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ PP +R P++T++ F++E + AI E+ RGGQV++V R+ G+E+ F
Sbjct: 793 GIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILREIARGGQVYFVYNRVNGIEKMASF 852
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
++ PG +A+AHGQ QLE+ M F G +L+ T I+E+GLDI N NTIIV D
Sbjct: 853 VKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDA 912
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E E G GF++A +
Sbjct: 913 DKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMR 972
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV--QIDININ 689
D+ IRG G + G +Q G + +G DL+ ++L E++ + P + + IDI +N
Sbjct: 973 DLEIRGAGNLLGAEQHGHIDAIGYDLYLKLLEEAIRNLKGEA----PKEEITTTIDIKVN 1028
Query: 690 PRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+ S YI +EM + A + +D +++ +E L ++G P +E LL+ Y+
Sbjct: 1029 AYIDSSYIEDENLRLEMYKKIASIKSRED---MIEISEELVDRFGDYPKPVEALLEIAYL 1085
Query: 749 RRMAADIGITKIYASGKMVGMKTN-MN 774
+ +A+ + IT+I G V +K N MN
Sbjct: 1086 KAIASQVNITEITEKGNSVILKFNDMN 1112
>gi|253576880|ref|ZP_04854205.1| transcription-repair coupling factor [Paenibacillus sp. oral taxon
786 str. D14]
gi|251843747|gb|EES71770.1| transcription-repair coupling factor [Paenibacillus sp. oral taxon
786 str. D14]
Length = 1177
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 251/625 (40%), Positives = 384/625 (61%), Gaps = 20/625 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH+ GIGK++GI + + +Y+ I YA G +P++Q M+ +Y
Sbjct: 492 LKVGDYVVHQNHGIGKYMGI--GTLEVGGIHKDYMHILYAGGDKLSVPIEQID-MIQKY- 547
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP---KNP 269
+ +E K P+ + KL W R K K + ++Q + DL++LY R Q P Y P
Sbjct: 548 VGSEDKEPK-IYKLGGN-EWNRVKNKVRSSVQNIADDLIKLYAER--QAAPGYAFEKDTP 603
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF A FPYE TPDQ +A +++RD+ E+ PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 604 EQQEFEAMFPYEETPDQLRAIEEIKRDM-EQSRPMDRLLCGDVGYGKTEVAIRAAFKAAI 662
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQ VL PT +LA+QH++ ERF+ YP I + LSRF+S+ E+ E + I+ G ++I
Sbjct: 663 EGKQVAVLVPTTILAQQHYETFRERFAGYP-INIQTLSRFRSRKEQNETIKGIRQGTVDI 721
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH +L +V+ +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL+++
Sbjct: 722 VIGTHRILSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMS 781
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
+ G RD S+I TPP R P++T++ +S+ V AI+ E+ RGGQ++Y+ R++G+ E
Sbjct: 782 MLGVRDLSVIETPPENRFPVQTYVVEYSQSLVREAIEREMARGGQIYYLYNRVQGIHEMA 841
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+ P + + HGQ ++LE+T+ F G +L+ T+I+E+G+DI N NT+IV
Sbjct: 842 AQISMLVPEARVVVGHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVH 901
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GL+QLYQLRGRVGR+++ A+AY Y L++ A +RL +++E ELG GF++A
Sbjct: 902 DADKMGLSQLYQLRGRVGRSNRIAYAYFTYQKDKSLTEVAEKRLQSIKEFTELGSGFKIA 961
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP----YKSVQID 685
+D+ IRG G + G +Q G + +VG DL+ +ML E + K + P + ID
Sbjct: 962 MRDLAIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIQKRKITMLGETPPAEATWNTTID 1021
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ I+ LPS+YI +E+ + A+ Q + + + L ++G+ P +++ LL
Sbjct: 1022 LGIDAYLPSDYIYDSIQKIEIYKKT--ASVQTFEDVAELEDELLDRFGELPDAVQNLLAV 1079
Query: 746 LYVRRMAADIGITKIYASGKMVGMK 770
V+ GI + G+ V +K
Sbjct: 1080 ARVKLYGKQYGIESMTLRGEEVTIK 1104
>gi|374578790|ref|ZP_09651884.1| transcription-repair coupling factor Mfd [Desulfosporosinus youngiae
DSM 17734]
gi|374414872|gb|EHQ87307.1| transcription-repair coupling factor Mfd [Desulfosporosinus youngiae
DSM 17734]
Length = 1179
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 248/619 (40%), Positives = 383/619 (61%), Gaps = 13/619 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+ GD+VVH GIG+F GI + +V + +Y I YA G +L V L +
Sbjct: 504 LKEGDHVVHVHHGIGQFTGIERLEV---GGIAKDYFGIRYA-GEDRLYVPLDQLHLLQKY 559
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK-NPAI 271
L + + L KL + W + K K + A+++M +DL++LY R K + + N
Sbjct: 560 LGSAGETLPKLYKLGGS-EWHKVKKKTRSAVKEMAIDLLKLYAQRESVKGHSFSQDNVWQ 618
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF +FPY TPDQ ++ DV+ D+ R PMDRL+CGDVG+GKTEVALRA F V
Sbjct: 619 TEFEEKFPYIETPDQLQSIADVKSDMM-RPRPMDRLLCGDVGYGKTEVALRAAFKAVMDS 677
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT +LA+QHF+ ERF+ YP I + +LSRF+S+ E++E + +K G +++IV
Sbjct: 678 KQVAVLVPTTILAQQHFNTFKERFTGYP-ITIEMLSRFRSQKEQKEIIQGLKEGRIDVIV 736
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L V +N+LGLLV+DEEQRFGV KEK+ + K +VDVLTLSATPIPRTL+++L
Sbjct: 737 GTHRILSEAVKFNDLGLLVIDEEQRFGVAHKEKLKTLKGNVDVLTLSATPIPRTLHMSLV 796
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T+++ F + V AI+ E+ RGGQVFYV R++ +++ F
Sbjct: 797 GVRDMSVIETPPEGRYPVQTYVTEFRADVVREAIRREIQRGGQVFYVHNRVEDMDQVTHF 856
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L + P +AHGQ R LE M F + + +L+ T I+E+GLD+ NANT+I+ +
Sbjct: 857 LNELVPEAKFGVAHGQMRERDLERVMLAFLEHEMDVLVSTTIIETGLDMPNANTLIIDEA 916
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+FGL+QLYQLRGRVGR++++A+ YL Y + +L++ A +RLAA+ E E G GF++A +
Sbjct: 917 DRFGLSQLYQLRGRVGRSNRKAYTYLLYKPQKVLTEVAEKRLAAIREFTEFGAGFKIAMR 976
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG +++ +ML E++ ++ + V S I++ ++
Sbjct: 977 DLEIRGAGNLIGAQQHGHLAAVGFEMYSQMLKEAVQELKGETIEEVVEPS--IELQVDAF 1034
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP +Y+ + + +D L + + L ++G P +E L++ + ++ +
Sbjct: 1035 LPDDYVADRQTKATLYQRLAMVRNED--QLSEMLDELVDRFGTPPREVEQLVEIIRIKLL 1092
Query: 752 AADIGITKIYASGKMVGMK 770
A+ + I +I + + V ++
Sbjct: 1093 ASSLKIEQIQQAKQYVNLR 1111
>gi|323490992|ref|ZP_08096186.1| transcription-repair coupling factor [Planococcus donghaensis MPA1U2]
gi|323395348|gb|EGA88200.1| transcription-repair coupling factor [Planococcus donghaensis MPA1U2]
Length = 1177
Score = 454 bits (1168), Expect = e-124, Method: Compositional matrix adjust.
Identities = 248/626 (39%), Positives = 390/626 (62%), Gaps = 14/626 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQAS 205
++ YS ++ GDY+VH GIG+FVGI + + V +Y+ I Y AD +PV +
Sbjct: 493 RIKSYSEIKPGDYIVHIHHGIGRFVGI--ETLESGGVHKDYLHIVYKADDKLFVPVDKID 550
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
++ +Y + +E K P+ L K+ W++ +TK A+Q + DL++LY R + +
Sbjct: 551 -LIQKY-IASEEKEPK-LHKMGGA-EWKKTRTKVSAAVQDIADDLIKLYAEREALRGFAF 606
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
+ + +F A+FPYE T DQ ++ +V+RD+ E E PMDRLICGDVG+GKTEVA+RA
Sbjct: 607 SEEQDMQRQFEAEFPYEETTDQLRSINEVKRDM-ENERPMDRLICGDVGYGKTEVAIRAA 665
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V GKQ L PT +LA+QHF+ +SERF +YP I VGL+SRF+SK ++ E + +K+
Sbjct: 666 FKAVLDGKQVAFLVPTTILAQQHFETMSERFKEYP-ITVGLMSRFRSKKQQTETVKGLKN 724
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I+VGTH +L + Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPR
Sbjct: 725 GSVDIVVGTHRILSKDMHYKDLGLLIIDEEQRFGVTHKEKIKQMKTNVDVLTLTATPIPR 784
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R P+++++ + V AI+ E+ RGGQVFY+ R+
Sbjct: 785 TLHMSMIGVRDLSVIETPPANRFPVQSYVMEHNGALVREAIEREMARGGQVFYLYNRVDD 844
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+ ++ +QQ P + AHGQ +LE + F G +L+ T I+E+G+DI N N
Sbjct: 845 MTRKVEEIQQLVPEARVGYAHGQMSETELESVILSFLDGDYDVLVTTTIIETGIDIPNVN 904
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+IV + + GL+QLYQLRGRVGR+ + A+AY Y +L+D A +RL A++E ELG
Sbjct: 905 TLIVYNADRMGLSQLYQLRGRVGRSSRVAYAYFMYQRDKVLTDVAEKRLMAIKEFTELGS 964
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + + V ++I
Sbjct: 965 GFKIAMRDLTIRGAGNLLGSQQHGFIDSVGFDLYSQMLQEAIDE-RQTGVKKEVVPEIEI 1023
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
++++ +P YI+ ++M + ++ + + + L ++G P + LL+
Sbjct: 1024 SLDVDAYIPDTYISDGYQKIQMYKRVKGIETEE--EMRELQDELIDRFGDMPTETDSLLR 1081
Query: 745 KLYVRRMAADIGITKIYASGKMVGMK 770
++ A ++G+ I +GK+V ++
Sbjct: 1082 IARMKVWAREVGVESIKQNGKIVSVR 1107
>gi|148657760|ref|YP_001277965.1| transcription-repair coupling factor [Roseiflexus sp. RS-1]
gi|148569870|gb|ABQ92015.1| transcription-repair coupling factor [Roseiflexus sp. RS-1]
Length = 1265
Score = 454 bits (1168), Expect = e-124, Method: Compositional matrix adjust.
Identities = 264/659 (40%), Positives = 383/659 (58%), Gaps = 61/659 (9%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIE--YVFIEYADG-MAKLPVKQASRMLYR 210
L+ GDYVVH + GI + G+ + S IE Y+ + YA+G +PV Q R+ R
Sbjct: 544 LKPGDYVVHIEHGIAVYEGLI----RRSVGGIERDYLNLRYAEGDRLYVPVDQIDRV-SR 598
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNP 269
Y + + P+ L++L T WER K K + A+Q + +L+ LY R L + P
Sbjct: 599 YIGAGDVE-PQ-LTRLG-TQDWERAKRKARAAVQDLAEELITLYAQRQLAEGHAFSPDTE 655
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
E A FPY TPDQ KA +DV+RD+ E+ PMDRL+CGDVGFGKTEVALRA F V
Sbjct: 656 WQRELEASFPYVETPDQLKAIIDVKRDM-EQPQPMDRLVCGDVGFGKTEVALRAAFKAVQ 714
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQ VLAPT VL +QH+D S R + +P +++ ++SRF+S E+ E + + G ++I
Sbjct: 715 DGKQVAVLAPTTVLVQQHYDTFSRRMAAFP-VRIDMISRFRSAKEQSEIVQRLARGEIDI 773
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
I+GTH LL VV+ +LGLLV+DEEQRFGV+ KE+I + +VDVLTL+ATPIPRTL++A
Sbjct: 774 IIGTHRLLSKDVVFKDLGLLVIDEEQRFGVRHKERIKQLRTNVDVLTLTATPIPRTLHMA 833
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
L G RD S+I TPP +R+PIKT++ + + + AI ELDRGGQV++V R++ +
Sbjct: 834 LAGIRDLSIIDTPPEDRIPIKTYVLPYDERLIREAILRELDRGGQVYFVHNRVQSIYYVA 893
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
D L++ P IA+ HGQ QLE M F G +L+CT I+ESGLD+ NANTII+
Sbjct: 894 DRLRRLVPEARIAVGHGQLEEHQLERVMLDFFTGRDDVLVCTTIIESGLDVPNANTIIID 953
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D FGLAQLYQLRGRVGR+ + A+AYLFY + + +A ERL A++E ELG GF++A
Sbjct: 954 DATNFGLAQLYQLRGRVGRSTQRAYAYLFYKSERPSTPEAQERLRAIQEATELGAGFRIA 1013
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVI-------------- 675
+D+ IRG G + G +Q+G + VG DL+ +L +++ + + +
Sbjct: 1014 MRDLEIRGAGNLLGAEQSGHIAAVGFDLYSRLLEQAVRTLKQRLIATNFITGTDAMRTSP 1073
Query: 676 -----------------SVPYKS--------------VQIDININPRLPSEYINHLENPM 704
SVP + V +D+ ++ LP +YI ++ +
Sbjct: 1074 GAPAQPSDGQTPPPARSSVPSRRPAVRVDEKVLISPLVTLDLPLDAYLPVDYIP--DDRV 1131
Query: 705 EMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYAS 763
+ A Q + + LR ++G+ P + LL L ++ +A G+T + +
Sbjct: 1132 RLAVYQRMAEAQTPEAVRDLRQELRDRFGELPEPADQLLIWLRIKALALAAGVTSVVTT 1190
>gi|430751825|ref|YP_007214733.1| transcription-repair coupling factor Mfd [Thermobacillus composti
KWC4]
gi|430735790|gb|AGA59735.1| transcription-repair coupling factor Mfd [Thermobacillus composti
KWC4]
Length = 1176
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 255/621 (41%), Positives = 382/621 (61%), Gaps = 24/621 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH+ GIGK++GI + V +Y+ I YADG +P+ Q ++ +Y
Sbjct: 488 LKVGDYVVHQNHGIGKYIGI--GTLEIGGVHKDYLHILYADGDKLSVPIDQID-LIQKY- 543
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAI 271
+ +E K P+ + KL + W R K K + ++Q + DL+ LY R + K+ P
Sbjct: 544 VGSEDKEPK-IYKLGGSE-WNRVKNKVRSSVQDIAEDLVRLYAERQSTPGHAFQKDTPYQ 601
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A FPYE TPDQ +A +++RD+ E PMDRL+CGDVG+GKTEVA+RA F G
Sbjct: 602 QEFEAMFPYEETPDQLRAIEEIKRDM-ESPRPMDRLLCGDVGYGKTEVAIRAAFKAAIEG 660
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT +LA+QH++ ERF+ YP V +LSRF+S+ ++ E + +K G ++I++
Sbjct: 661 KQVAVLVPTTILAQQHYETFRERFAGYP-FNVQVLSRFRSRKDQTETIKGLKAGTVDIVI 719
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL VV+ +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++
Sbjct: 720 GTHRLLSKDVVFKDLGLLIVDEEQRFGVTHKEKLKRLKTNVDVLTLTATPIPRTLHMSML 779
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD SLI TPP R P++T++ +S V AI+ EL RGGQV+Y+ R++G+ + +
Sbjct: 780 GVRDLSLIETPPENRFPVQTYVVEYSPSLVREAIERELARGGQVYYLYNRVQGIYQMAEQ 839
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+ P +A+ HGQ ++LE+T+ F G +L+ T+I+E+G+DI N NT+IV D
Sbjct: 840 ISALVPDARVAVGHGQMSEQELEKTILDFLDGEFDVLVSTSIIETGVDIPNVNTLIVHDA 899
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL ++ E ELG GF++A +
Sbjct: 900 DKMGLSQLYQLRGRVGRSNRIAYAYFTYRRDKVLNEAAEKRLQSIREFTELGSGFKIAMR 959
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ-----IDI 686
D+ IRG G + G +Q G + +VG D++ +ML E ++K + ++ P V+ ID+
Sbjct: 960 DLAIRGAGNLLGAEQHGFIASVGFDMYSQMLAEEIAK-RKASLLGQPEPEVREVNTAIDL 1018
Query: 687 NINPRLPSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
++ LPSEYI +E+ V + E D E L ++G P ++E LL
Sbjct: 1019 AMDAYLPSEYIYDSMQKIEIYKKVAVIREPEETD-----DLREELVDRFGDPPEAVENLL 1073
Query: 744 KKLYVRRMAADIGITKIYASG 764
++ GI +I G
Sbjct: 1074 AVARLKAYGRRCGIEQITQRG 1094
>gi|392972511|ref|ZP_10337900.1| transcription-repair-coupling factor [Staphylococcus equorum subsp.
equorum Mu2]
gi|392509484|emb|CCI61207.1| transcription-repair-coupling factor [Staphylococcus equorum subsp.
equorum Mu2]
Length = 1170
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 258/628 (41%), Positives = 393/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L+ GDYVVH G+G+++G+ + + V +Y+ ++Y G +L PV Q
Sbjct: 490 KIKSYQDLKVGDYVVHVHHGVGRYLGV--ETLEVGGVHKDYIKLQYK-GTDQLFVPVDQM 546
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K PR L+KL T W++ K K + +++ M +L++LY R
Sbjct: 547 DQ-VQKY-VASEDKTPR-LNKLG-GTEWKKTKAKVQQSVEDMADELIDLYKEREMSVGYK 602
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF FPYE TPDQ K+ ++++D+ E E PMDRL+CGDVG+GKTEVA+RA
Sbjct: 603 YGPDTAEQNEFEIDFPYELTPDQGKSIEEIKQDM-EIERPMDRLLCGDVGYGKTEVAVRA 661
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P I+V L+SRF+S E +E + +K
Sbjct: 662 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-IEVQLISRFRSTKEVKETKEKLK 720
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I S K +VDVLTL+ATPIP
Sbjct: 721 SGFVDIVVGTHKLLSKDIHYKDLGLLIVDEEQRFGVRHKERIKSLKTNVDVLTLTATPIP 780
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 781 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSREGQVFYLYNKVQ 840
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +I IAHGQ LEETM F IL+ T I+E+G+D+ NA
Sbjct: 841 SIYEKREQLQMLMPEANIGIAHGQMKEGDLEETMLSFINHEYDILVTTTIIETGVDVPNA 900
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +LS+ A +RL A++E ELG
Sbjct: 901 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLSETAEDRLQAIKEFTELG 960
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISVPY 679
GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ DE P
Sbjct: 961 SGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGVKDEKQ--DAP- 1017
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++I++NI+ LP+EYI + ++ +E+ + K + LM + L ++ P +
Sbjct: 1018 -EIEIELNIDAYLPAEYIPNEQSKIEIYKKLRKIETE--AQLMDVKDELIDRFNDYPIEV 1074
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A + G+ I GK V
Sbjct: 1075 ERLLDMMEIKVHALNAGVALIKDVGKKV 1102
>gi|70727507|ref|YP_254423.1| transcription-repair coupling factor [Staphylococcus haemolyticus
JCSC1435]
gi|123748600|sp|Q4L3G0.1|MFD_STAHJ RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|68448233|dbj|BAE05817.1| transcription-repair coupling factor [Staphylococcus haemolyticus
JCSC1435]
Length = 1169
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 251/628 (39%), Positives = 395/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDYVVH G+G+++G++ DV +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYVVHVHHGVGRYLGVETLEVGDVHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K P+ L+KL + W++ K K + +++ + +L+ LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPK-LNKLG-GSEWKKTKAKVQQSVEDIADELIALYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ERE PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGEDTAEQSAFEMDFPYELTPDQAKSIDEIKGDM-ERERPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF+S E +E
Sbjct: 657 AVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VQIELISRFRSTKEVKETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTMKTNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
R++ + E + LQ P +IA+AHGQ R LEETM F G IL+ T I+E+G+D
Sbjct: 836 NRVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINGEFDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY + +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHSANKVLTETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEEEPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
V++++N++ LP+EYI + + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PEVEMELNLDAYLPAEYIQNEQAKIEIYKKLRKVETEE--QLFDIKDELIDRFNDYPVEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL+ + ++ A G+T I GK +
Sbjct: 1074 ERLLEMVEIKIHALHAGVTLIKDKGKQI 1101
>gi|297545520|ref|YP_003677822.1| transcription-repair coupling factor [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296843295|gb|ADH61811.1| transcription-repair coupling factor [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 1163
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 261/644 (40%), Positives = 394/644 (61%), Gaps = 20/644 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L G YVVH GIGK+ GI+ ++ D + +Y+ I YA G +PV+Q ++ +Y
Sbjct: 501 LEVGSYVVHVNYGIGKYEGIE-KIKVDGIIR-DYLKIIYAGGDTLFVPVEQLD-LVQKYV 557
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
P T P L+KL + W + K K K A++ + DL++LY R K + P P
Sbjct: 558 GP--TDNPPKLNKLG-GSEWLKAKRKAKKAVEDLAKDLLQLYAKRQIAKGHAFSPDTPWQ 614
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF QFPYE T DQ + +++ D+ E++ PMDRL+CGDVG+GKTEVALRA F V+ G
Sbjct: 615 REFEEQFPYEETEDQLRCIKEIKEDM-EKDKPMDRLLCGDVGYGKTEVALRAAFKAVADG 673
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA QH+ ERF ++P +K+ +LSRF++ E+ + + + G ++IIV
Sbjct: 674 KQVAFLCPTTILAYQHYTNFMERFKEFP-VKIEMLSRFRTPKEQAQIIKGLAEGTIDIIV 732
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL + V + +LGLL++DEEQRFGV KEKI K ++DVLTLSATPIPRTL+++L
Sbjct: 733 GTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPRTLHMSLI 792
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ PP +R P++T++ F++E + AI E+ RGGQV++V R+ G+E+
Sbjct: 793 GIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILREIGRGGQVYFVYNRVNGIEKMASL 852
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
++ PG +A+AHGQ QLE+ M F G +L+ T I+E+GLDI N NTIIV D
Sbjct: 853 VKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDA 912
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E E G GF++A +
Sbjct: 913 DKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMR 972
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV--QIDININ 689
D+ IRG G + G +Q G +G +G DL+ ++L E++ + P + + IDI +N
Sbjct: 973 DLEIRGAGNLLGAEQHGHIGAIGYDLYLKLLEEAIRNLKGEA----PKEEITTTIDIKVN 1028
Query: 690 PRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+ S YI + +EM + A + +D +++ +E L ++G P +E LL+ Y+
Sbjct: 1029 AYIDSSYIEDENSRLEMYKKIASIESRED---MVEISEELVDRFGDYPKPVEALLEIAYL 1085
Query: 749 RRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRN 792
+ +A+ IT+I G V +K + V +I+ + E N
Sbjct: 1086 KAIASKANITEITEKGNTVILKFKNIESVKMEVIEKIIKEYGGN 1129
>gi|429728200|ref|ZP_19262938.1| transcription-repair coupling factor [Peptostreptococcus anaerobius
VPI 4330]
gi|429150342|gb|EKX93262.1| transcription-repair coupling factor [Peptostreptococcus anaerobius
VPI 4330]
Length = 1133
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 253/631 (40%), Positives = 391/631 (61%), Gaps = 19/631 (3%)
Query: 146 SYKVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQ 203
S K+D + L+ GDYVVH+ G+GK+ GI + + + +Y+ I Y G +P+ Q
Sbjct: 484 STKIDSFMELKLGDYVVHENSGVGKYTGI--EQVSVNGIKRDYIKIIYKGGDNLYVPIDQ 541
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
+ + +Y + + ++ + L+KL W + K K K I+ M DL+ELY R +K
Sbjct: 542 MDK-VQKY-IGGDVEKVK-LNKLG-GQEWSKAKRKVKKEIEDMTQDLLELYSKRESRKGY 597
Query: 264 PYPKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
Y K+ EF +FPY+ T DQ KA + ++D+ E + MDRLICGDVG+GKTEVA+R
Sbjct: 598 KYSKDTIWQTEFEEKFPYQETDDQLKAIKETKKDM-ESQKAMDRLICGDVGYGKTEVAIR 656
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
AIF V KQ VL PT +LA+QHF+ +ERF YP I+V +LSRF++ ++ E +
Sbjct: 657 AIFKAVMDNKQVAVLVPTTILAQQHFNTFTERFEDYP-IRVEVLSRFKTPKQQREIIADA 715
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K G +++++GTH ++ + LGL+VVDEEQRFGVK KE + ++ VDVLTLSATPI
Sbjct: 716 KKGLVDVLIGTHRIVSKDIAMPRLGLIVVDEEQRFGVKHKEALKKLRVDVDVLTLSATPI 775
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVI-SAIKYELDRGGQVFYVLPR 501
PRTL+++L+G RD S+I PP ER P+ T+++ +KE +I I EL RGGQVF+V R
Sbjct: 776 PRTLHMSLSGIRDMSIIEEPPQERYPVMTYVTE-AKESIIQDEIYRELARGGQVFFVYNR 834
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
++G+E +++ P +I +AHG+ S QLE T+ F +L+CT I+E+G+DI
Sbjct: 835 VEGIETIASKIKKLVPEANIGVAHGRMTSSQLENTVLSFLSKEFDVLVCTTIIETGMDIA 894
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANT+I+ D + GL+QLYQLRGRVGR++K+ +AYL Y ++S+ + +RL A++E E
Sbjct: 895 NANTMIIYDADKMGLSQLYQLRGRVGRSNKQGYAYLMYERNKVISEVSEKRLKAIKEFTE 954
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS 681
G GF++A +D+ IRG G + G QQ G + +G +L+ +ML E++ K+ V V
Sbjct: 955 FGSGFKVAMRDLEIRGAGDVMGSQQHGHMEVIGYELYVKMLNEAIRKIKGDPVEEVL--D 1012
Query: 682 VQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+ID+ +N +PS YI +EM + A +++D++ + E L ++ P +
Sbjct: 1013 VEIDLTVNAYIPSSYIEDEVTKLEMYKKIAAIDSKEDMYDIQ---EELEDRFSDIPKETQ 1069
Query: 741 ILLKKLYVRRMAADIGITKIYASGKMVGMKT 771
LL Y++ + + I KI +G M+ +++
Sbjct: 1070 TLLNIAYIKSLCKTLKINKIKQTGDMIDLES 1100
>gi|302339041|ref|YP_003804247.1| transcription-repair coupling factor [Spirochaeta smaragdinae DSM
11293]
gi|301636226|gb|ADK81653.1| transcription-repair coupling factor [Spirochaeta smaragdinae DSM
11293]
Length = 1128
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 247/605 (40%), Positives = 384/605 (63%), Gaps = 17/605 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L GD VVH GIG+F+GI D + +Y+ +EYAD M +P++Q + ++ RY
Sbjct: 464 LNPGDLVVHVNYGIGRFLGI--DRITAAGTERDYIKLEYADQEMIFIPIEQVN-LVQRY- 519
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+ E + PR L KL WE RK + + +++ + L++LY R + + +P++
Sbjct: 520 IGQEGQSPR-LDKLG-GKGWESRKARVRKSVEDLADRLIKLYAKRKEARGFSFPEDTDWQ 577
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A+FPY+ T DQ + +V+ D+ E + PMDRLICGDVG+GKTEVA+RA F V AG
Sbjct: 578 VEFEAEFPYQETADQLRCIEEVKADM-ESDRPMDRLICGDVGYGKTEVAMRAAFKAVVAG 636
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ LAPT +LA+QH++ ERF +YP +K+ ++SRF K ++ + L + G +++++
Sbjct: 637 KQVAFLAPTTILAEQHYENFCERFKRYP-VKIDMVSRFVPKKKQHQILSALTEGSVDLLI 695
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L V++ NLGL+V+DEEQRFGVK KE++ + SVD L+LSATPIPRTL+++L
Sbjct: 696 GTHRILQKDVLFKNLGLIVIDEEQRFGVKDKERLKELRTSVDSLSLSATPIPRTLHMSLL 755
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD SL++T P R PI+T + F +E V AI+ E+DRGGQVF++ R++ L + F
Sbjct: 756 KIRDISLLTTAPNNRRPIETTIQEFDEELVAKAIRREMDRGGQVFFLHNRVETLPQVRRF 815
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P V + IAHGQ S QLE+ M +F G+ ++L+ T I+E+G+DI N NTII+
Sbjct: 816 LERLIPEVFVEIAHGQMSSSQLEDIMHRFIHGSFQVLLATTIIENGIDIPNVNTIIIDRA 875
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+G++QLYQLRGRVGR+D+ ++AYLFYP++ LS+ A++RL + + ELG GF++A K
Sbjct: 876 DMYGISQLYQLRGRVGRSDRSSYAYLFYPEQRSLSEIAMKRLQIISDYTELGSGFKIAMK 935
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
DM +RG G + G QQ G++ +VG D++ +L E+++++ +P + V ++++ +
Sbjct: 936 DMEVRGAGNLLGRQQHGEILSVGFDMYLRILDEAVAEMSRGDGEEIPVE-VYLELDYSGY 994
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK----KLY 747
+P YI ME+ + AA Q L L ++G P + LL +++
Sbjct: 995 IPDSYITDPTEKMEVYKKI--AAIQVDEDLQMVVAELHDRFGPIPDEVLSLLAISEIRIF 1052
Query: 748 VRRMA 752
R M+
Sbjct: 1053 CRHMS 1057
>gi|359410006|ref|ZP_09202471.1| transcription-repair coupling factor [Clostridium sp. DL-VIII]
gi|357168890|gb|EHI97064.1| transcription-repair coupling factor [Clostridium sp. DL-VIII]
Length = 1167
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 266/672 (39%), Positives = 407/672 (60%), Gaps = 27/672 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH GIG + GIK DV +Y+ I Y G +PV Q ++ +Y
Sbjct: 503 LKPGDYVVHANHGIGVYKGIKQIDVGGHKR---DYLDIVYDKGDKLYVPVDQLD-LIQKY 558
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E K P+ ++KL + W++ K K + +I ++ DL++LY R K +PK+
Sbjct: 559 -IGSEGKSPK-VNKLG-SAEWQKAKAKARKSINEIAEDLVKLYAMRSTVKGHKFPKDTEW 615
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FP+E TPDQ + ++++D+ E + PMDRL+CGDVG+GKTEVALRA F V
Sbjct: 616 QKQFEDEFPFEETPDQLTSLEEIKQDM-ESDKPMDRLLCGDVGYGKTEVALRAAFKAVMD 674
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ +L PT +LA+QH+ + RFS +P IK+ ++SRF++ ++++ L +K G+L+I+
Sbjct: 675 GKQVAILVPTTILAEQHYKNMKNRFSDFP-IKIDMVSRFRTAKQQKDILQKVKEGNLDIL 733
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ + + +LGLLVVDEEQRFGVKQKEKI K +VDVLTLSATPIPRTL+++L
Sbjct: 734 IGTHRLVSKDIQFKDLGLLVVDEEQRFGVKQKEKIKGIKKNVDVLTLSATPIPRTLHMSL 793
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
+G RD S+I TPP ER P++T++ + + + AI E+ R GQV++V R++ +E
Sbjct: 794 SGVRDISVIETPPEERYPVQTYVVEQNDQLIRDAILREIGRDGQVYFVYNRVEDIERMAK 853
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
++Q P + +AHGQ RQLE+ M F G +L+CT I+E+G+DIQN NTII+ D
Sbjct: 854 YVQTLVPESKVGVAHGQMAERQLEKEMYDFMSGEYNVLVCTTIIETGMDIQNVNTIIIYD 913
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR+++ A+AYL Y +L++ A +RL AL++ ELG GF++A
Sbjct: 914 ADKMGLSQLYQLRGRVGRSNRIAYAYLLYTKDKVLTEVAEKRLKALKDFTELGSGFKIAM 973
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G Q G + ++G DL+ ML E K+ + + P ++ +DI ++
Sbjct: 974 RDLEIRGAGNMMGSSQHGHMASIGYDLYCRML-EDTVKILKGEIQKEPIETT-LDIKVDA 1031
Query: 691 RLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+ YI E+ ++ + +K AA + I E L +Y K P + L+ Y++
Sbjct: 1032 FISESYI---EDEIQKIEVYKKIAAIEGIDDYNDIKEELEDRYSKIPEPVYNLMDIAYIK 1088
Query: 750 RMAADIGITKIYASGKMV----GMKTNMNKKVFKMMIDSMTSEV-----HRNSLTFEGDQ 800
A I I +I + K + N K +FK ++D + V +F+
Sbjct: 1089 SQAKSIFIEEIKENSKEIIFRFAQDENGYKNIFKTLMDKYKNSVVLKFGTNPYFSFKLKY 1148
Query: 801 IKAELLLELPRE 812
IK E LE +E
Sbjct: 1149 IKKENKLEFLKE 1160
>gi|403047728|ref|ZP_10903186.1| transcription-repair coupling factor [Staphylococcus sp. OJ82]
gi|402762469|gb|EJX16573.1| transcription-repair coupling factor [Staphylococcus sp. OJ82]
Length = 1170
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 258/628 (41%), Positives = 392/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L+ GDYVVH G+G+++G+ + + V +Y+ ++Y G +L PV Q
Sbjct: 490 KIKSYQDLKVGDYVVHVHHGVGRYLGV--ETLEVGGVHKDYIKLQYK-GTDQLFVPVDQM 546
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K PR L+KL T W++ K K + +++ M +L++LY R
Sbjct: 547 DQ-VQKY-VASEDKTPR-LNKLG-GTEWKKTKAKVQQSVEDMADELIDLYKEREMSVGYK 602
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF FPYE TPDQ K+ ++++D+ E E PMDRL+CGDVG+GKTEVA+RA
Sbjct: 603 YGPDTAEQNEFEIDFPYELTPDQGKSIEEIKQDM-EIERPMDRLLCGDVGYGKTEVAVRA 661
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P I+V L+SRF+S E +E + +K
Sbjct: 662 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-IEVQLISRFRSTKEVKETKEKLK 720
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I S K +VDVLTL+ATPIP
Sbjct: 721 SGFVDIVVGTHKLLSKDIHYKDLGLLIVDEEQRFGVRHKERIKSLKTNVDVLTLTATPIP 780
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 781 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSREGQVFYLYNKVQ 840
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +I IAHGQ LEETM F IL+ T I+E+G+D+ NA
Sbjct: 841 SIYEKREQLQMLMPEANIGIAHGQMKEGDLEETMLSFINHEYDILVTTTIIETGVDVPNA 900
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +LS+ A +RL A++E ELG
Sbjct: 901 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLSETAEDRLQAIKEFTELG 960
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISVPY 679
GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ DE P
Sbjct: 961 SGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGVKDEKQ--DAP- 1017
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++I++NI+ LP+EYI + ++ +E+ + K + LM + L ++ P
Sbjct: 1018 -EIEIELNIDAYLPAEYIPNEQSKIEIYKKLRKIETE--AQLMDVKDELIDRFNDYPIEA 1074
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A + G+ I GK V
Sbjct: 1075 ERLLDMMEIKVHALNAGVALIKDVGKKV 1102
>gi|126662926|ref|ZP_01733924.1| transcription-repair coupling factor [Flavobacteria bacterium BAL38]
gi|126624584|gb|EAZ95274.1| transcription-repair coupling factor [Flavobacteria bacterium BAL38]
Length = 1087
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 250/630 (39%), Positives = 371/630 (58%), Gaps = 24/630 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
SL GDYV H GIGKF G+ K V+ + I+ V YAD + + +Y
Sbjct: 405 SLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLV---YADNDIVYVSIHSLHKISKY 461
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
N + P + KL + AW+ K K K I+ + +L++LY R K + P +
Sbjct: 462 N--GKDGAPPKIYKLG-SNAWKTLKQKTKARIKHIAFNLIQLYAKRRLDKGFQFSPDSYL 518
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E + F YE TPDQ A DV+ D+ E E PMDRL+CGDVGFGKTEVA+RA F V
Sbjct: 519 QKELESSFIYEDTPDQITATADVKADM-ENERPMDRLVCGDVGFGKTEVAIRAAFKAVDN 577
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ VL PT +LA QH+ SER P + V ++RF++ +K E L ++ G ++I+
Sbjct: 578 GKQVAVLVPTTILAYQHYRTFSERLKDMP-VTVSYVNRFRTAKQKSETLQKLQEGKVDIL 636
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ VV+ +LGLL++DEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L
Sbjct: 637 IGTHQLVNKNVVFKDLGLLIIDEEQKFGVNVKDKLKTIATNVDTLTLTATPIPRTLQFSL 696
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S+I+TPPP R PI+TH+ F++E + AI YE+ RGGQVF++ RI+ ++E
Sbjct: 697 MAARDLSVITTPPPNRYPIETHVIRFNEEAIRDAISYEIQRGGQVFFINNRIENIKEVAG 756
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ PG + I HGQ ++LEE M F +G +L+ T I+ESGLD+ NANTI + +
Sbjct: 757 MIQRLVPGAKVGIGHGQMEGKKLEELMLAFMEGEFDVLVATTIIESGLDVPNANTIFINN 816
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A Y P S+++ +A +R+ ALE+ ELG GF +A
Sbjct: 817 ANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSMMTGEAQKRITALEQFSELGSGFNIAM 876
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP-----------Y 679
KD+ IRG G + G +Q+G + +G D + +++ E++ ++ E+ +
Sbjct: 877 KDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIDELKENEFKDLYQEENDIETKEFV 936
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
K +QID + P EYIN++ + + NE + +D L QF + L ++G P
Sbjct: 937 KDIQIDTDFELLFPDEYINNITERLNLYNELSQI--KDEATLQQFEQKLIDRFGALPKPA 994
Query: 740 EILLKKLYVRRMAADIGITKIYA-SGKMVG 768
LL + ++ A +GI ++ GKMVG
Sbjct: 995 IALLNSVRIKWKATAMGIERLLMKQGKMVG 1024
>gi|289422646|ref|ZP_06424487.1| transcription-repair coupling factor [Peptostreptococcus anaerobius
653-L]
gi|289156946|gb|EFD05570.1| transcription-repair coupling factor [Peptostreptococcus anaerobius
653-L]
Length = 1133
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 250/630 (39%), Positives = 388/630 (61%), Gaps = 17/630 (2%)
Query: 146 SYKVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQ 203
S K+D + L+ GDYVVH+ G+GK+ GI + + + +Y+ I Y G +P+ Q
Sbjct: 484 STKIDSFMELKLGDYVVHENSGVGKYTGI--EQVSVNGIKRDYIKIIYKGGDNLYVPIDQ 541
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
+ + +Y + + ++ + L+KL W + K K K I+ M DL+ELY R +K
Sbjct: 542 MDK-VQKY-IGGDVEKVK-LNKLG-GQEWSKAKRKVKKEIEDMTQDLLELYSKRESRKGY 597
Query: 264 PYPKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
Y K+ EF +FPY+ T DQ KA + ++D+ E + MDRLICGDVG+GKTEVA+R
Sbjct: 598 KYSKDTIWQTEFEEKFPYQETDDQLKAIKETKKDM-ESQKAMDRLICGDVGYGKTEVAIR 656
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
AIF V KQ VL PT +LA+QHF+ +ERF YP I+V +LSRF++ ++ E +
Sbjct: 657 AIFKAVMDNKQVAVLVPTTILAQQHFNTFTERFEDYP-IRVEVLSRFKTPKQQREIIADA 715
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K G +++++GTH ++ + LGL+VVDEEQRFGVK KE + ++ VDVLTLSATPI
Sbjct: 716 KKGLVDVLIGTHRIVSKDIAMPRLGLIVVDEEQRFGVKHKEALKKLRVDVDVLTLSATPI 775
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL+++L+G RD S+I PP ER P+ T+++ + + I EL RGGQVF+V R+
Sbjct: 776 PRTLHMSLSGIRDMSIIEEPPQERYPVMTYVTEAKESIIQDEIYRELARGGQVFFVYNRV 835
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+G+E +++ P +I +AHG+ S QLE T+ F +L+CT I+E+G+DI N
Sbjct: 836 EGIETIASKIKKLVPEANIGVAHGRMTSSQLENTVLSFLSKEFDVLVCTTIIETGMDIAN 895
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
ANT+I+ D + GL+QLYQLRGRVGR++K+ +AYL Y ++S+ + +RL A++E E
Sbjct: 896 ANTMIIYDADKMGLSQLYQLRGRVGRSNKQGYAYLMYERNKVISEVSEKRLKAIKEFTEF 955
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 682
G GF++A +D+ IRG G + G QQ G + +G +L+ +ML E++ K+ V V V
Sbjct: 956 GSGFKVAMRDLEIRGAGDVMGSQQHGHMEVIGYELYVKMLNEAIRKIKGDPVEEVL--DV 1013
Query: 683 QIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
+ID+ +N +PS YI +EM + A +++D++ + E L ++ P +
Sbjct: 1014 EIDLTVNAYIPSSYIEDEVTKLEMYKKIAAIDSKEDMYDIQ---EELEDRFSDIPKETQT 1070
Query: 742 LLKKLYVRRMAADIGITKIYASGKMVGMKT 771
LL Y++ + + I KI +G M+ +++
Sbjct: 1071 LLNIAYIKSLCKTLKINKIKQTGDMIDLES 1100
>gi|220932952|ref|YP_002509860.1| transcription-repair coupling factor [Halothermothrix orenii H 168]
gi|219994262|gb|ACL70865.1| transcription-repair coupling factor [Halothermothrix orenii H 168]
Length = 1170
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 260/622 (41%), Positives = 380/622 (61%), Gaps = 19/622 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+ GDYVVH+ GIGK++G+K VQ +Y+ ++YA G KL V L +
Sbjct: 503 LQVGDYVVHENHGIGKYLGVKTLAVQGQHK---DYLVLKYA-GEDKLYVPTDQFNLVQKY 558
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+ + K P+ L KL W++ K K K ++++M + L+ELY R K + +
Sbjct: 559 IGADNKPPK-LYKLGGND-WKKVKQKVKESVKEMAIGLLELYAERETIKGYSFSDDTVWQ 616
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPYE TPDQ KA +V+ D+ E TPMDRL+CGDVG+GKTEVA+RA F V G
Sbjct: 617 KEFEEAFPYEETPDQLKAIEEVKNDM-ESATPMDRLLCGDVGYGKTEVAIRAAFKAVMDG 675
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT +LA+QH++ SER YP I + ++SRF++ AE+ E L + G ++II+
Sbjct: 676 KQTAVLVPTTILAQQHYNTFSERMKNYP-INIEMISRFKTPAEQREVLKKLAAGEVDIII 734
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL VV+N+LGLL++DEEQRFGV KEKI K +VDVLT++ATPIPRTL++AL
Sbjct: 735 GTHRLLSRDVVFNDLGLLIIDEEQRFGVSHKEKIKDLKRNVDVLTMTATPIPRTLHMALV 794
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ F+KE + A++ EL R GQV++V R++ ++E
Sbjct: 795 GVRDMSVIETPPENRYPIRTYIREFNKELIRDAVRKELGREGQVYFVHNRVEDIQEQATM 854
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+++ P +A+AHGQ +LE M F +L+CT I+E+GLDI N NTIIV
Sbjct: 855 IKKLVPECRVAVAHGQMNEHKLERLMLDFYNHQYDVLVCTTIIETGLDIPNVNTIIVNRA 914
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
Q GLAQLYQLRGRVGR+++ A+AYL Y +L + A +RL A++E LG GF++A +
Sbjct: 915 DQMGLAQLYQLRGRVGRSNRIAYAYLLYEKDRVLPEVAEKRLRAIKEFTNLGSGFKIAMR 974
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEML---FESLSKVDEHCVISVPYKSVQIDINI 688
D+ IRG G + G +Q G + +VG L+ ++L E L ++ I+ V+I+++I
Sbjct: 975 DLEIRGAGNLLGPEQHGHIASVGFSLYCKLLEGAVEELKGKEKDKGIT----RVEIELDI 1030
Query: 689 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+ LP EYI +++ + A +D + + L ++G P + LL +
Sbjct: 1031 DAYLPDEYITDSRQKIDIYKKI--MALKDFEEVEDMIDELIDRFGDPPEPVLNLLGISKL 1088
Query: 749 RRMAADIGITKIYASGKMVGMK 770
+ A+ +GI KI + K V +
Sbjct: 1089 KVKASKLGIDKISRNKKFVEFR 1110
>gi|253681221|ref|ZP_04862019.1| transcription-repair coupling factor [Clostridium botulinum D str.
1873]
gi|253562459|gb|EES91910.1| transcription-repair coupling factor [Clostridium botulinum D str.
1873]
Length = 1169
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 254/655 (38%), Positives = 409/655 (62%), Gaps = 26/655 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH GIG + GIK +VQ +Y+ + Y G +PV+Q ++ +Y
Sbjct: 501 LKPGDYVVHTNHGIGVYKGIKQLEVQGHKK---DYLELSYTAGDTLYVPVEQLD-LVQKY 556
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E K P+ ++KL + W + KTK K AI ++ +L++LY R K + K+
Sbjct: 557 -IGSEGKSPK-VNKLG-GSEWIKAKTKVKKAINEIAEELVKLYAIRSTLKGHKFNKDTIW 613
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FPY+ TPDQ A +++ D+ E MDRL+CGDVG+GKTEVA+RA F V
Sbjct: 614 QKQFEEEFPYDETPDQLTAIQEIKSDM-ESGKAMDRLLCGDVGYGKTEVAVRAAFKAVMD 672
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH+ + +RF +P + + ++SRF++ A+ + L+ ++ G+++I+
Sbjct: 673 GKQVAFLVPTTILAEQHYTNLIQRFCDFP-VNIEMISRFKTSAQVKSILNEVRVGNVDIL 731
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH +L V + +LGLL+VDEEQRFGV KEKI + K +VDVLTL+ATPIPRTL+++L
Sbjct: 732 IGTHRILQKDVEFKDLGLLIVDEEQRFGVTHKEKIKNLKKNVDVLTLTATPIPRTLHMSL 791
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG RD S+I TPP ER P++T++ F+ + + AI ELDR GQV++V R+ ++E
Sbjct: 792 TGIRDISVIETPPEERYPVQTYVVEFNDQLIEDAISRELDRDGQVYFVYNRVGSIKEMAA 851
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+L + FP I IAHGQ R+LE+ M F + IL+CT I+E+GLDIQNANT+I+ D
Sbjct: 852 YLAKMFPNSKIGIAHGQMPERELEKVMYDFMRKEYDILVCTTIIETGLDIQNANTMIIYD 911
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+FGL+QLYQLRGRVGR+++ A+AYL Y +L++ A +RL A+++ ELG GF++A
Sbjct: 912 ADRFGLSQLYQLRGRVGRSNRMAYAYLTYKKDKVLTEVAEKRLKAIKDFTELGSGFKIAM 971
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDI 686
+D+ IRG G + G Q G + +VG DL+ ML +++ ++D+ + +D+
Sbjct: 972 RDLEIRGAGNLIGAAQHGHMASVGYDLYCRMLEDTIKLVRGEIDKEPI------ETTVDL 1025
Query: 687 NINPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
++ +PS YI +E+ + A +EQ +M+ E L ++ P+S++ L+
Sbjct: 1026 KVDAYIPSNYIKDEVQKIEVYKKIANIDSEQ---GMMEIREELEDRFSDIPFSVDNLINI 1082
Query: 746 LYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 800
Y++ +A +G+ ++ V +K + + + + ++ ++ S+ +N + GD+
Sbjct: 1083 AYIKTIANKLGVIEVKEKLTEVIIKFSNKEYINQNLVKAIISKYSKNVMFKLGDE 1137
>gi|326803014|ref|YP_004320832.1| transcription-repair coupling factor [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650035|gb|AEA00218.1| transcription-repair coupling factor [Aerococcus urinae
ACS-120-V-Col10a]
Length = 1183
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 260/690 (37%), Positives = 416/690 (60%), Gaps = 29/690 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI-----EYVFIEYADGMA-KLPVKQASRM 207
L+ GDYVVH GIG+FVG++ T+ + +Y+ I YAD + +P+ Q +
Sbjct: 502 LKPGDYVVHVNHGIGQFVGVE-------TIEVAGNHKDYLSIVYADNASIHVPIDQID-L 553
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-P 266
+ +Y + E K P+ L+K+ T W++ K + I+ + DL++LY R +K + P
Sbjct: 554 VQKY-VSAEGKSPK-LNKMG-GTEWQKTKQRVSKKIEDIADDLVDLYAERETRKGYAFSP 610
Query: 267 KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
N A F +FPY T DQ ++ +++ D+ E+E PMDRL+ GDVGFGKTEVA+RA F
Sbjct: 611 DNEDQAAFEDEFPYPETDDQLRSIKEIKADM-EKEKPMDRLLVGDVGFGKTEVAMRAAFK 669
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
+ GKQ L PT VLA+QH++ + ERF YP + LLSRF+S AE++ + +K G
Sbjct: 670 AMLDGKQVAFLVPTTVLAQQHYETMLERFKDYP-FTIDLLSRFRSPAEQKHVIKGLKEGS 728
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
+ +++GTH LL + + +LGLLVVDEEQRFGVK KE++ + + +VDVLTL+ATPIPRTL
Sbjct: 729 VQLVIGTHRLLSKDIKFLDLGLLVVDEEQRFGVKAKERLKALRKNVDVLTLTATPIPRTL 788
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
+++ G RD S+I TPP R P++T++ + + AI+ EL R GQVFY+ ++ ++
Sbjct: 789 NMSMMGVRDLSVIETPPANRFPVQTYVMEQNYGAIRDAIERELARNGQVFYLFNNVQNIQ 848
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
E +F+++ P +AIAHGQ ++ QLEE + F G +L+ T I+E+G+D+ N NT+
Sbjct: 849 EKANFIEELVPKARVAIAHGQMHANQLEEVLMDFLAGDDDVLVTTTIIETGIDMPNVNTL 908
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQG 625
+V+D + GL+ LYQLRGRVGR+++ A+AY Y PDK+ L++ + +RL AL++ ELG G
Sbjct: 909 LVEDADRMGLSTLYQLRGRVGRSNRVAYAYFMYRPDKA-LNEASEKRLTALKDFTELGAG 967
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
F++A +D+ IRG G + G++Q G V +VG DLF +ML E++ K + P +I+
Sbjct: 968 FKIAMRDLSIRGAGNLLGQEQHGFVNSVGYDLFQQMLDEAIRK-KQGKAAKRPQSPTEIE 1026
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
++I+ +PSEYI +E+ +D+ + + L ++G+ P ++ LL
Sbjct: 1027 LHIDAYIPSEYIQDENQKVEIYKRINLL--EDVDAMWDLDDELLDRFGEPPVEVQWLLAV 1084
Query: 746 LYVRRMAADIGITKIYASGK---MVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 802
++ A IG+ KI GK +V K ++ ++ ++ + + DQ+
Sbjct: 1085 GAMKSYATAIGVEKITRKGKAIELVFTKQQNPSQLTPLIFQALEDIPMKLQIKMANDQLV 1144
Query: 803 AEL-LLELPREQLLNWIFQCLAELYASLPA 831
+L +L Q L+++ Q L +L + A
Sbjct: 1145 MQLNTKDLSTYQWLDYLLQFLTQLSKDIAA 1174
>gi|227509305|ref|ZP_03939354.1| transcription-repair coupling factor [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227191235|gb|EEI71302.1| transcription-repair coupling factor [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 1168
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 255/624 (40%), Positives = 385/624 (61%), Gaps = 26/624 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIE-----YVFIEYADGMAKL--PVKQASR 206
L+ GDYVVH GIG++ G+K T+ ++ Y+ I Y D AKL PV Q +
Sbjct: 487 LKPGDYVVHVNHGIGRYEGMK-------TMEVDGKHQDYLTISYRDS-AKLFIPVTQLN- 537
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP 266
M+ +Y + +E K+PR ++KL + W++ K K I+ + DL+ELY R +K YP
Sbjct: 538 MIQKY-VSSEDKKPR-INKLG-GSEWQKTKRKVASKIEDIADDLIELYAKRDAEKGYAYP 594
Query: 267 KNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
+ ++ EF A+FPY TPDQ ++ +++ D+ E PMDRL+ GDVG+GKTEVALRA F
Sbjct: 595 PDDSLQNEFEARFPYTETPDQLRSADEIKHDM-EHNKPMDRLLVGDVGYGKTEVALRAAF 653
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
V GKQ L PT +LA+QH++ + ERFS YP I+V +LSRFQ+ A+ +E L+ +K G
Sbjct: 654 KAVEVGKQVAFLVPTTILAQQHYETMLERFSDYP-IEVRVLSRFQTTAQIKETLEGLKKG 712
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++++VGTH LL V ++NLGLL++DEEQRFGVK KE+I + VDVLTL+ATPIPRT
Sbjct: 713 TVDVVVGTHRLLSKDVKFSNLGLLIIDEEQRFGVKHKERIKEMRTDVDVLTLTATPIPRT 772
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L +++ G RD S+I TPP R PI+T++ + + AI+ E+ RGGQVFY+ R+ +
Sbjct: 773 LNMSMMGVRDLSVIETPPSNRYPIQTYVIEQNAGTIREAIEREMARGGQVFYLHNRVADI 832
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
E+ + L + P IA HGQ Q+E+ + F G +L+ T I+E+G+DI N NT
Sbjct: 833 EKTVSQLSELVPDARIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNT 892
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
+ V++ GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+ + ELG G
Sbjct: 893 LFVENADHMGLSQLYQLRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRDFTELGSG 952
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
F++A +D+ IRG G + G+QQ+G V +VG DL+ +ML +++SK V+ +V++D
Sbjct: 953 FKIAMRDLSIRGAGNLLGKQQSGFVDSVGYDLYTQMLSDAVSKKRGKNVVFKTDATVELD 1012
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ LPS+YI + +E+ + QD L + T+ L ++G + LLK
Sbjct: 1013 --LEAYLPSDYIQDSQQKIEIYKRIRQIENQD--QLNEVTDDLIDRFGDYNEPVANLLKI 1068
Query: 746 LYVRRMAADIGITKIYASGKMVGM 769
++ A I K++ G V +
Sbjct: 1069 SEMKMYADKAMIEKVHQDGPRVTL 1092
>gi|303273712|ref|XP_003056209.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462293|gb|EEH59585.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 426
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 228/424 (53%), Positives = 298/424 (70%), Gaps = 4/424 (0%)
Query: 251 MELYLHRLKQKRPPY--PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLI 308
M LYL RL R PY P F F Y TPDQ A D DL++R+TPMDR++
Sbjct: 1 MSLYLKRLHCIRAPYTPPCEDIYKRFNDSFSYTLTPDQATAIRDCYDDLSKRDTPMDRIV 60
Query: 309 CGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR 368
GDVGFGKTEVA+RAIF V+S+G Q VLAPT VLAKQH +S R + D+ V LL+R
Sbjct: 61 VGDVGFGKTEVAMRAIFRVLSSGGQVFVLAPTTVLAKQHAATISARLEIF-DMSVELLNR 119
Query: 369 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-SRVVYNNLGLLVVDEEQRFGVKQKEKIAS 427
++ + L G +++VGTH +L Y L LLV+DEEQRFGVK K++I++
Sbjct: 120 NVKESSRLAVLQRWMMGKTDVVVGTHLMLNLPPENYKRLNLLVIDEEQRFGVKHKDQISA 179
Query: 428 FKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKY 487
K +VDVLTLSATPIPRTL++A+TGFRDASL++TPPPER PI T L ++++ V AI++
Sbjct: 180 LKATVDVLTLSATPIPRTLHMAITGFRDASLVTTPPPERRPINTQLQVYNEKTVCDAIQF 239
Query: 488 ELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKI 547
ELDRGGQ+FYV+P+I+ ++ + LQ FP + I AHG+ QL+ M+ FA G +
Sbjct: 240 ELDRGGQIFYVVPKIQMIDGALQRLQGLFPCLRIMKAHGKMKGDQLDIAMDYFACGKADV 299
Query: 548 LICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSD 607
L+CT IVESGLDI N NTII+++VQQFGLA LYQLRGRVGRA ++A+AY+F+ D L
Sbjct: 300 LLCTTIVESGLDIPNVNTIIIEEVQQFGLASLYQLRGRVGRACRQAYAYMFHADIGDLRS 359
Query: 608 QALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS 667
+A ERL ALEEC LG+GF+LAE+DM IRG GTIFGE+Q+G V N+G DL+ E L+ L
Sbjct: 360 EAQERLLALEECCGLGEGFKLAERDMAIRGVGTIFGEKQSGQVDNIGADLYMEFLYNQLE 419
Query: 668 KVDE 671
++++
Sbjct: 420 QIEK 423
>gi|114565647|ref|YP_752801.1| transcription-repair coupling factor [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114336582|gb|ABI67430.1| Transcription-repair coupling factor - superfamily II helicase
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 1073
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 256/623 (41%), Positives = 386/623 (61%), Gaps = 19/623 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYRY 211
L+ GDYVVH+ GIG F G+ ++S + EY+ +EYA G +L P+++ +L++Y
Sbjct: 422 LKLGDYVVHESYGIGIFRGVS--QVENSGITREYILLEYA-GTDRLYLPLEKLD-LLFKY 477
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKN 268
+ K PR L+KL +AWER + K +IQ + DL++LY HR + R Y P
Sbjct: 478 TSSGD-KEPR-LNKLG-GSAWERTRKKVAQSIQDLAEDLLQLYAHR--ESREGYAFSPDT 532
Query: 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328
P ++F +FP+ TPDQ KA +V++D+ R PMDRL+CGDVG+GKTEV LRA F +
Sbjct: 533 PWQSQFEDEFPFRETPDQLKAINEVKKDMETRR-PMDRLVCGDVGYGKTEVFLRAAFKAI 591
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 388
GKQ +L PT VLA+QHF +ERF+ YP + + +LSRF+S +E++ ++ ++ G ++
Sbjct: 592 MDGKQVAILVPTTVLAEQHFQTFTERFAAYPAV-IEVLSRFRSNSEQKRIVEDLQKGVVD 650
Query: 389 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 448
I++ TH LL V + +LGLLV+DEE RFGV QKEKI + K VDV++LSATPIPR+L++
Sbjct: 651 IVIATHRLLSRDVKFKDLGLLVIDEEHRFGVAQKEKIKALKELVDVISLSATPIPRSLHM 710
Query: 449 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 508
ALTG RD S+I TPPPER PI T++ +++E ++ A+ E++R GQVF+V RI+ +
Sbjct: 711 ALTGLRDLSVIETPPPERYPITTYVLEYNEEIIVEAVMKEIERQGQVFFVHNRIEDIYRV 770
Query: 509 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 568
+ L + FPG+ IA+ HG+ +L M F G ++ +CT I+ESGLD+ N NTIIV
Sbjct: 771 KEQLDELFPGIKIAVGHGRMKEDELSRVMMDFVNGKYQLFLCTTIIESGLDMPNVNTIIV 830
Query: 569 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 628
+ + GLAQLYQLRGRVGR+ + A+AYL Y ++S+ + +RL A+ E ELG G ++
Sbjct: 831 DEADKMGLAQLYQLRGRVGRSHRLAYAYLTYRPDWVISEASQKRLNAIREFNELGSGMKI 890
Query: 629 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDINI 688
A +D+ IRG G I G +Q G + VG DL+ +L + ++ V Q+DI+I
Sbjct: 891 ALRDLEIRGAGNILGAEQHGYIQAVGFDLYCRLLEQETGRLKGEQVQENRVDP-QLDIDI 949
Query: 689 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+ +P YI + M + A Q+ ++ R +G P ++E L+ +
Sbjct: 950 DYYIPESYIPDSGSKMRIYRRLLLAGSQEEVEEIREEIRDR--FGPLPQAVENFLQIAAL 1007
Query: 749 RRMAADIGITKIYASGKMVGMKT 771
R +A D I + G+ + ++T
Sbjct: 1008 RLLARDKEIKSLRRKGRQIEIQT 1030
>gi|402838568|ref|ZP_10887073.1| transcription-repair coupling factor [Eubacteriaceae bacterium OBRC8]
gi|402272782|gb|EJU21998.1| transcription-repair coupling factor [Eubacteriaceae bacterium OBRC8]
Length = 1127
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 251/624 (40%), Positives = 387/624 (62%), Gaps = 14/624 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GD VVH+ GIGKF+GI + +++ + +Y+ + Y G +P+ Q R + RY
Sbjct: 491 LKKGDIVVHEVYGIGKFIGI--EQKENDGIKKDYIKVSYKGGDFIYVPISQMDR-VQRY- 546
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ N + R +L++L + W+++K K K A+ ++ L+ELY R QK + K+
Sbjct: 547 IGNASDRI-SLTQLG-SNQWKKQKQKAKKAVDEIAKYLIELYAERENQKGYAFSKDTVWQ 604
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A FP+E T DQ K+ D++RD+ E PMDRLICGDVG+GKTEVALR IF
Sbjct: 605 REFEALFPFEETQDQLKSIKDIKRDM-ENIRPMDRLICGDVGYGKTEVALRGIFKACMDQ 663
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH+ +S+RF YP I V +LSRF++K E+E+ ++ IK+G +++++
Sbjct: 664 KQVAFLVPTTILAQQHYKTLSDRFENYP-INVDVLSRFKTKKEQEKTVEKIKNGEVDVVI 722
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + N+G+LV+DEEQRFGVK KEKI K ++DVLTL+ATPIPRTL ++L+
Sbjct: 723 GTHRLLSKDVEFKNIGMLVIDEEQRFGVKHKEKIKQMKSNIDVLTLTATPIPRTLNMSLS 782
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ PP +R P+ T+++ + ++ AI+ E+ R GQVF+V I+ +++ +F
Sbjct: 783 GIRDMSVLEEPPNDRYPVITYVTEAREGIILDAIEREMARNGQVFFVYNSIENIDKMYNF 842
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P IAIAHGQ + LE+ M + + +L+CT I+E+G+DI NANTIIV +
Sbjct: 843 IQKLVPSARIAIAHGQMSAIALEDIMMDYLEKKYDVLLCTTIIETGMDISNANTIIVYNA 902
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+ ++A+AYL Y +L++ A +RL A+ E E G GF++A
Sbjct: 903 DKMGLSQLYQLRGRVGRSSRQAYAYLMYEKDKVLTEIAQKRLKAIREFTEFGSGFRVAMM 962
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G I GE Q G + VG DL+ +ML +S +++ V S ++ +N+N
Sbjct: 963 DLEIRGSGNILGEVQHGHIEEVGYDLYIKMLNDSFNRLKGKTVEEKV--STEVYLNVNAY 1020
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
+P +YI ME+ + ++ + +Q + ++ P +E LLK +R +
Sbjct: 1021 IPDDYIEDEIQKMEIYKKIASINSKEDYFDIQ--AEIEDRFSDIPQEVENLLKISSIRSL 1078
Query: 752 AADIGITKIYASGKMVGMKTNMNK 775
I + KI + + +T K
Sbjct: 1079 GEKIRVVKISQKNRNIVYETKTQK 1102
>gi|363892230|ref|ZP_09319398.1| transcription-repair coupling factor [Eubacteriaceae bacterium CM2]
gi|361964180|gb|EHL17224.1| transcription-repair coupling factor [Eubacteriaceae bacterium CM2]
Length = 1127
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 251/624 (40%), Positives = 387/624 (62%), Gaps = 14/624 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GD VVH+ GIGKF+GI + +++ + +Y+ + Y G +P+ Q R + RY
Sbjct: 491 LKKGDIVVHEVYGIGKFIGI--EQKENDGIKKDYIKVSYKGGDFIYVPISQMDR-VQRY- 546
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ N + R +L++L + W+++K K K A+ ++ L+ELY R QK + K+
Sbjct: 547 IGNASDRI-SLTQLG-SNQWKKQKQKAKKAVDEIAKYLIELYAERENQKGYAFSKDTVWQ 604
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A FP+E T DQ K+ D++RD+ E PMDRLICGDVG+GKTEVALR IF
Sbjct: 605 REFEALFPFEETQDQLKSIKDIKRDM-ENIRPMDRLICGDVGYGKTEVALRGIFKACMDQ 663
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH+ +S+RF YP I V +LSRF++K E+E+ ++ IK+G +++++
Sbjct: 664 KQVAFLVPTTILAQQHYKTLSDRFENYP-INVDVLSRFKTKKEQEKTVEKIKNGEVDVVI 722
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + N+G+LV+DEEQRFGVK KEKI K ++DVLTL+ATPIPRTL ++L+
Sbjct: 723 GTHRLLSKDVEFKNIGMLVIDEEQRFGVKHKEKIKQMKSNIDVLTLTATPIPRTLNMSLS 782
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ PP +R P+ T+++ + ++ AI+ E+ R GQVF+V I+ +++ +F
Sbjct: 783 GIRDMSVLEEPPNDRYPVITYVTEAREGIILDAIEREMARNGQVFFVYNSIENIDKMYNF 842
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P IAIAHGQ + LE+ M + + +L+CT I+E+G+DI NANTIIV +
Sbjct: 843 IQKLVPSARIAIAHGQMSAIALEDIMMDYLEKKYDVLLCTTIIETGMDISNANTIIVYNA 902
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+ ++A+AYL Y +L++ A +RL A+ E E G GF++A
Sbjct: 903 DKMGLSQLYQLRGRVGRSSRQAYAYLMYEKDKVLTEIAQKRLKAIREFTEFGSGFRVAMM 962
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G I GE Q G + VG DL+ +ML +S +++ V S ++ +N+N
Sbjct: 963 DLEIRGSGNILGEVQHGHIEEVGYDLYIKMLNDSFNRLKGKTVEEKV--STEVYLNVNAY 1020
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
+P +YI ME+ + ++ + +Q + ++ P +E LLK +R +
Sbjct: 1021 IPDDYIEDEIQKMEIYKKIASINSKEDYFDIQ--AEIEDRFSDIPQEVENLLKISSIRSL 1078
Query: 752 AADIGITKIYASGKMVGMKTNMNK 775
I + KI + + +T K
Sbjct: 1079 GEKIRVVKISQKNRNIVYETKTQK 1102
>gi|227512317|ref|ZP_03942366.1| transcription-repair coupling factor [Lactobacillus buchneri ATCC
11577]
gi|227084492|gb|EEI19804.1| transcription-repair coupling factor [Lactobacillus buchneri ATCC
11577]
Length = 1168
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 255/624 (40%), Positives = 384/624 (61%), Gaps = 26/624 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIE-----YVFIEYADGMAKL--PVKQASR 206
L+ GDYVVH GIG++ G+K T+ ++ Y+ I Y D AKL PV Q +
Sbjct: 487 LKPGDYVVHVNHGIGRYEGMK-------TMEVDGKHQDYLTISYRDS-AKLFIPVTQLN- 537
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP 266
M+ +Y + +E K+PR ++KL + W++ K K I+ + DL+ELY R +K YP
Sbjct: 538 MIQKY-VSSEDKKPR-INKLG-GSEWQKTKRKVASKIEDIADDLIELYAKRDAEKGYAYP 594
Query: 267 KNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
+ ++ EF A+FPY TPDQ ++ +++ D+ E PMDRL+ GDVG+GKTEVALRA F
Sbjct: 595 PDDSLQNEFEARFPYTETPDQLRSADEIKHDM-EHNKPMDRLLVGDVGYGKTEVALRAAF 653
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
V GKQ L PT +LA+QH++ + ERFS YP I+V +LSRFQ+ A+ +E L+ +K G
Sbjct: 654 KAVEVGKQVAFLVPTTILAQQHYETMLERFSDYP-IEVRVLSRFQTTAQIKETLEGLKKG 712
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++++VGTH LL V ++NLGLL++DEEQRFGVK KE+I + VDVLTL+ATPIPRT
Sbjct: 713 TVDVVVGTHRLLSKDVKFSNLGLLIIDEEQRFGVKHKERIKEMRTDVDVLTLTATPIPRT 772
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L +++ G RD S+I TPP R PI+T++ + + AI+ E+ RGGQVFY+ R+ +
Sbjct: 773 LNMSMMGVRDLSVIETPPSNRYPIQTYVIEQNAGTIREAIEREMARGGQVFYLHNRVADI 832
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
E+ + L + P IA HGQ Q+E+ + F G +L+ T I+E+G+DI N NT
Sbjct: 833 EKTVSQLSELVPDARIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNT 892
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
+ V++ GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+ + ELG G
Sbjct: 893 LFVENADHMGLSQLYQLRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRDFTELGSG 952
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
F++A +D+ IRG G + G+QQ+G V +VG DL+ +ML +++SK V +V++D
Sbjct: 953 FKIAMRDLSIRGAGNLLGKQQSGFVDSVGYDLYTQMLSDAVSKKRGKNVAFKTDATVELD 1012
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ LPS+YI + +E+ + QD L + T+ L ++G + LLK
Sbjct: 1013 --LEAYLPSDYIQDSQQKIEIYKRIRQIENQD--QLNEVTDDLIDRFGDYNEPVANLLKI 1068
Query: 746 LYVRRMAADIGITKIYASGKMVGM 769
++ A I K++ G V +
Sbjct: 1069 SEMKMYADKAMIEKVHQDGPRVTL 1092
>gi|389819104|ref|ZP_10209145.1| transcription-repair coupling factor [Planococcus antarcticus DSM
14505]
gi|388463519|gb|EIM05871.1| transcription-repair coupling factor [Planococcus antarcticus DSM
14505]
Length = 1177
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 248/630 (39%), Positives = 389/630 (61%), Gaps = 14/630 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQAS 205
++ YS ++ GDY+VH GIG+FVGI + + V +Y+ I Y AD +PV +
Sbjct: 493 RIKSYSEIKPGDYIVHIHHGIGRFVGI--ETLETGGVHKDYLHIVYKADDKLFVPVDKID 550
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
++ +Y + +E K P+ L K+ T W++ +TK A+Q + DL++LY R + +
Sbjct: 551 -LIQKY-IASEEKEPK-LHKMGGT-EWKKTRTKVSAAVQDIADDLIKLYAEREALRGFAF 606
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
+ + +F A+FPYE T DQ ++ +V+RD+ E E PMDRLICGDVG+GKTEVA+R
Sbjct: 607 SEEQDMQRQFEAEFPYEETVDQLRSINEVKRDM-ENERPMDRLICGDVGYGKTEVAIRGA 665
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V GKQ L PT +LA+QHF+ +SERF YP I VGL+SRF+SK ++ E + +K+
Sbjct: 666 FKAVLDGKQVAFLVPTTILAQQHFETMSERFKDYP-ITVGLMSRFRSKKQQTETVKGLKN 724
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G +++++GTH +L + Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPR
Sbjct: 725 GSVDVVIGTHRILSKDMQYKDLGLLIIDEEQRFGVTHKEKIKQMKTNVDVLTLTATPIPR 784
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R P+++++ + V AI+ E+ RGGQVFY+ R+
Sbjct: 785 TLHMSMMGVRDLSVIETPPANRFPVQSYVMEHNGALVREAIEREMARGGQVFYLYNRVDD 844
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+ ++ +Q P + AHGQ +LE + F G +L+ T I+E+G+DI N N
Sbjct: 845 MTRKVEEIQSLVPEARVGYAHGQMNETELESVILSFLDGDYDVLVTTTIIETGIDIPNVN 904
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+IV + + GL+QLYQLRGRVGR+ + A+AY Y +L+D A +RL A++E ELG
Sbjct: 905 TLIVYNADRMGLSQLYQLRGRVGRSSRVAYAYFMYQRDKVLTDVAEKRLMAIKEFTELGS 964
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + + V ++I
Sbjct: 965 GFKIAMRDLTIRGAGNLLGSQQHGFIDSVGFDLYSQMLQEAIDE-RQSGVKKEVIPEIEI 1023
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
++I+ +P Y++ ++M + ++ +Q + L ++G P + LL+
Sbjct: 1024 SLDIDAYIPDSYVSDGYQKIQMYKRVKGVDTEEEMTELQ--DELIDRFGDMPNETDSLLR 1081
Query: 745 KLYVRRMAADIGITKIYASGKMVGMKTNMN 774
++ A IG+ I +GK+V ++ + N
Sbjct: 1082 IARMKVWARQIGVESIKQTGKVVTVRLSEN 1111
>gi|350264155|ref|YP_004875462.1| transcription-repair coupling factor [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|349597042|gb|AEP84830.1| transcription-repair coupling factor [Bacillus subtilis subsp.
spizizenii TU-B-10]
Length = 1177
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 240/563 (42%), Positives = 368/563 (65%), Gaps = 14/563 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQIGDYVVHINHGIGKYLGI--ETLEINGIHKDYLNIHY-QGSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLGGS-EWKRVKKKVETSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + EF + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQREFESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + GKQ +L PT +LA+QH++ ++ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIGDGKQVALLVPTTILAQQHYETITERFQDYP-INIGLLSRFRTRKEANETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P +A AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVAYAHGKMTENELETVMLNFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + SV +++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKSVQFET-E 1022
Query: 684 IDININPRLPSEYINHLENPMEM 706
ID+ ++ +P YI + ++M
Sbjct: 1023 IDVELDAYIPETYIQDGKQKIDM 1045
>gi|227522403|ref|ZP_03952452.1| transcription-repair coupling factor [Lactobacillus hilgardii ATCC
8290]
gi|227090461|gb|EEI25773.1| transcription-repair coupling factor [Lactobacillus hilgardii ATCC
8290]
Length = 1168
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 255/624 (40%), Positives = 384/624 (61%), Gaps = 26/624 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIE-----YVFIEYADGMAKL--PVKQASR 206
L+ GDYVVH GIG++ G+K T+ ++ Y+ I Y D AKL PV Q +
Sbjct: 487 LKPGDYVVHVNHGIGRYEGMK-------TMEVDGKHQDYLTISYRDS-AKLFIPVTQLN- 537
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP 266
M+ +Y + +E K+PR ++KL + W++ K K I+ + DL+ELY R +K YP
Sbjct: 538 MIQKY-VSSEDKKPR-INKLG-GSEWQKTKRKVASKIEDIADDLIELYAKRDAEKGYAYP 594
Query: 267 KNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
+ ++ EF A+FPY TPDQ ++ +++ D+ E PMDRL+ GDVG+GKTEVALRA F
Sbjct: 595 PDDSLQNEFEARFPYTETPDQLRSADEIKHDM-EHNKPMDRLLVGDVGYGKTEVALRAAF 653
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
V GKQ L PT +LA+QH++ + ERFS YP I+V +LSRFQ+ A+ +E L+ +K G
Sbjct: 654 KAVEVGKQVAFLVPTTILAQQHYETMLERFSDYP-IEVRVLSRFQTTAQIKETLEGLKKG 712
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++++VGTH LL V ++NLGLL++DEEQRFGVK KE+I + VDVLTL+ATPIPRT
Sbjct: 713 TVDVVVGTHRLLSKDVKFSNLGLLIIDEEQRFGVKHKERIKEMRTDVDVLTLTATPIPRT 772
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L +++ G RD S+I TPP R PI+T++ + + AI+ E+ RGGQVFY+ R+ +
Sbjct: 773 LNMSMMGVRDLSVIETPPSNRYPIQTYVIEQNAGTIREAIEREMARGGQVFYLHNRVADI 832
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
E+ + L + P IA HGQ Q+E+ + F G +L+ T I+E+G+DI N NT
Sbjct: 833 EKTVSQLSELVPDARIAYIHGQMTENQMEDILYDFVNGEYDVLVTTTIIETGVDIPNVNT 892
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
+ V++ GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+ + ELG G
Sbjct: 893 LFVENADHMGLSQLYQLRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRDFTELGSG 952
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
F++A +D+ IRG G + G+QQ+G V +VG DL+ +ML +++SK V +V++D
Sbjct: 953 FKIAMRDLSIRGAGNLLGKQQSGFVDSVGYDLYTQMLSDAVSKKRGKNVAFKTDATVELD 1012
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ LPS+YI + +E+ + QD L + T+ L ++G + LLK
Sbjct: 1013 --LEAYLPSDYIQDSQQKIEIYKRIRQIENQD--QLNEVTDDLIDRFGDYNEPVANLLKI 1068
Query: 746 LYVRRMAADIGITKIYASGKMVGM 769
++ A I K++ G V +
Sbjct: 1069 SEMKMYADKAMIEKVHQDGPRVTL 1092
>gi|451816997|ref|YP_007453198.1| transcription-repair-coupling factor Mfd [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451782976|gb|AGF53944.1| transcription-repair-coupling factor Mfd [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 1166
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/671 (39%), Positives = 403/671 (60%), Gaps = 25/671 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH G+G + GIK DV +Y+ I Y G +PV Q ++ +Y
Sbjct: 502 LKPGDYVVHASHGVGVYKGIKQIDVAGHKR---DYLDIVYDKGDKLYVPVDQLD-LIQKY 557
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E K P+ ++KL + W++ K K + +I ++ DL++LY R K + K+
Sbjct: 558 -IGSEGKAPK-VNKLG-SAEWQKAKAKARKSINEIAEDLVKLYAMRSTVKGHKFSKDTEW 614
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FP+E TPDQ + +++ D+ E E PMDRL+CGDVG+GKTEVALRA F V
Sbjct: 615 QKQFEDEFPFEETPDQLTSIEEIKLDM-ESEKPMDRLVCGDVGYGKTEVALRAAFKAVMD 673
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ +L PT +LA+QH+ + RFS +P IK+ ++SRF++ +++E L +K G+L+I+
Sbjct: 674 GKQVAILVPTTILAEQHYKNIKNRFSDFP-IKIDMISRFKTTKQQKETLQKVKEGNLDIL 732
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ + + +LGLL+VDEEQRFGVKQKEKI K +VDVLTLSATPIPRTL+++L
Sbjct: 733 IGTHRLVSKDIQFKDLGLLIVDEEQRFGVKQKEKIKGIKKNVDVLTLSATPIPRTLHMSL 792
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
+G RD S+I TPP ER PI+T++ + + + AI E+ R GQV++V R++ +E
Sbjct: 793 SGVRDISVIETPPEERYPIQTYVVEQNDQLIRDAILREIGRNGQVYFVYNRVEDIERMAK 852
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
++Q P + +AHGQ RQLE M F G +L+CT I+E+G+DIQN NTII+ D
Sbjct: 853 YVQALVPESKVGVAHGQMAERQLENVMIDFMSGEYNVLVCTTIIETGMDIQNVNTIIIYD 912
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR+++ A+AYL Y +L++ A +RL AL++ ELG GF++A
Sbjct: 913 ADKMGLSQLYQLRGRVGRSNRIAYAYLLYTKDKVLTEVAEKRLKALKDFTELGSGFKIAM 972
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G Q G + ++G DL+ ML E K+ + + P ++ +DI ++
Sbjct: 973 RDLEIRGAGNMMGSSQHGHMASIGYDLYCRML-EDTVKLIKGEIQKEPIETT-LDIKVDA 1030
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+P YI +E+ + A + + E L +Y K P + L+ Y++
Sbjct: 1031 FIPESYIEDEIQKIEIYKKI--AVIEGLEDYNDIKEELEDRYSKIPEPVYNLMDIAYIKS 1088
Query: 751 MAADIGITKIYASGKMVGMKTNMN----KKVFKMMIDSMTSEV-----HRNSLTFEGDQI 801
A I I +I + K + K N K +FK++++ + V F+ +
Sbjct: 1089 QAKSIFIEEIKETPKEMLFKFAENESDYKNIFKILMEKYKNSVVLKFGSNPYFAFKIKCV 1148
Query: 802 KAELLLELPRE 812
K E +LE +E
Sbjct: 1149 KKENVLEFLKE 1159
>gi|302390888|ref|YP_003826708.1| transcription-repair coupling factor [Acetohalobium arabaticum DSM
5501]
gi|302202965|gb|ADL11643.1| transcription-repair coupling factor [Acetohalobium arabaticum DSM
5501]
Length = 1175
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 245/627 (39%), Positives = 387/627 (61%), Gaps = 25/627 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYVVH+ GIGK++G+K +VQ + +Y+ I+YAD KL V L +
Sbjct: 506 LNVGDYVVHENHGIGKYLGVKTLEVQGHNQ---DYLLIKYADE-DKLYVPTDQVNLIQKY 561
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ E +P+ S S+ W R K + K ++Q+M +L+++Y R + + ++
Sbjct: 562 VGKEGNKPKLYSLGSND--WARVKQRVKESVQEMAEELLDIYAEREVKDGYAFSEDTVWQ 619
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF + FPYE TPDQ K +V+ D+ E PMDRL+CGDVG+GKTEVA+RA F V G
Sbjct: 620 QEFESDFPYEETPDQLKTIEEVKEDM-ESPQPMDRLLCGDVGYGKTEVAIRAAFKAVLDG 678
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT +LA+QH + +RF YP +KVG+LSRF++ E+++ ++ +K G ++II+
Sbjct: 679 KQVAMLVPTTILAQQHLNTFIDRFEDYP-VKVGMLSRFKTAKEQKKIIEDLKQGIIDIII 737
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + + +N+LG L+VDEEQRFGVK KE++ K S+DVLTL+ATPIPRTL+++L
Sbjct: 738 GTHRILSTDIEFNDLGFLIVDEEQRFGVKHKERLKQIKKSIDVLTLTATPIPRTLHMSLV 797
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD SLI TPP R PI+T++ +S + + AI+ E+DRGGQV++V R+K +++
Sbjct: 798 GVRDMSLIETPPQNRYPIRTYVREYSDDLIREAIRKEIDRGGQVYFVHNRVKNIDKVAAK 857
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+++ P ++ AHGQ +LE+ M F G +L+CT I+E+GLDI N NTI++ +
Sbjct: 858 IKKLLPKAEVVTAHGQMSEAKLEKIMLGFLDGEHDVLVCTTIIETGLDIPNVNTILINNA 917
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
Q GLAQLYQLRGRVGR ++ A+AYL Y +LS+ A +RL A++E LG GF++A +
Sbjct: 918 DQLGLAQLYQLRGRVGRTNRVAYAYLLYQQDQVLSEVAEKRLQAIKEFTNLGSGFKIAMR 977
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G I G +Q G + +G L+ ++L ++++++ + + ID+ ++
Sbjct: 978 DLEIRGAGNILGPKQHGHIEAIGFSLYCKLLEQAVNEL-KGEDDEEEAAEINIDLELDAY 1036
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTE------SLRRQYGKEPYSMEILLKK 745
+P +YI + +E+ + I +M TE LR ++G P S+ L+
Sbjct: 1037 IPEDYIPDSKQKIEIYKK--------ISGIMNLTEVEEVKAELRDRFGAIPQSVLNLVMI 1088
Query: 746 LYVRRMAADIGITKIYASGKMVGMKTN 772
++ +A ++ + I + ++ + N
Sbjct: 1089 SKIKVLALNLDVKSIESKDGLIMVNFN 1115
>gi|406934956|gb|EKD69066.1| hypothetical protein ACD_47C00275G0003, partial [uncultured
bacterium]
Length = 1113
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 264/683 (38%), Positives = 400/683 (58%), Gaps = 17/683 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNL 213
L GDYVVH GIG + G+ + +Y+ +EY+D A ML++Y +
Sbjct: 438 LADGDYVVHVNYGIGIYRGLT--LLSAGGREADYLLLEYSDSDKLYVPVDALSMLHKY-I 494
Query: 214 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAIA 272
+ PR + KL+D++ W+R+K + +I+K+ L+ LY R K + N +
Sbjct: 495 ALDGAEPR-IGKLNDSS-WKRQKATARKSIEKLAAYLVTLYARRSIAKGHQFGLDNDLMR 552
Query: 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 332
+F F Y+ T DQ+ + ++V+ D+ E E PMDRLICGDVGFGKTEVA+RA F GK
Sbjct: 553 QFEDSFAYKETVDQQNSIVEVKCDM-ESEKPMDRLICGDVGFGKTEVAIRAAFKACMDGK 611
Query: 333 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392
Q LAPT +LA QH++ + RFS YP + V LLSRF++K+E++E ++ +K G ++++VG
Sbjct: 612 QVAFLAPTTILAMQHYNTLISRFSSYP-VSVDLLSRFRTKSEQKETVEKLKEGKVDVVVG 670
Query: 393 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTG 452
TH ++ + + +LGLL+VDEEQRFGVK KE++ K VDVLTL+ATPIPRTLY++L G
Sbjct: 671 THRIIQKDMGFKDLGLLIVDEEQRFGVKHKERLKELKNHVDVLTLTATPIPRTLYMSLVG 730
Query: 453 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 512
RD S I+TPP ERLP+KT + +S++ V AI EL R GQV+YV RI + + L
Sbjct: 731 SRDISTINTPPAERLPVKTFVLRYSEDTVKEAITRELLRRGQVYYVHNRIDTINSVVSKL 790
Query: 513 QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 572
PG + AHGQ +QLE+ M F IL+ T I+E+GLDI N NTII++
Sbjct: 791 SALVPGARVRAAHGQMDEKQLEKIMVDFCDREFDILVSTTIIENGLDISNVNTIIIERAD 850
Query: 573 QFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKD 632
FGL+QLYQLRGRVGRA +A+AY F+P +S+LS A +RL A++E ELG G+++A +D
Sbjct: 851 TFGLSQLYQLRGRVGRAKNQAYAYFFFPHESILSHIAKKRLQAMKEFSELGSGYKIAMRD 910
Query: 633 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL 692
+ IRG G + G +Q G + +G +++ +L E + K+ + +I+IN N L
Sbjct: 911 LEIRGAGNLLGHEQHGHICTIGFEMYCRLLEEEIKKIKGESIERKDEFDCEIEINTNAYL 970
Query: 693 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 752
P+ YI +++ AA D L + + L ++GK P + L + + ++ +
Sbjct: 971 PTTYITSTYQKIDVYKRMVAAAGFD--ELAELNDELIDRFGKYPEQVYNLFQIVKIKILG 1028
Query: 753 ADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLL----E 808
+ + K + +K ++ ++++ + +N +TF D ++ LL +
Sbjct: 1029 RRLKALSVKEEKKHIIIKFQNAGQIDPSAVETLRRKFGQN-VTF-SDDVEITLLYLTKAD 1086
Query: 809 LPREQLLNWIFQCLAELYASLPA 831
L + LL I L L AS PA
Sbjct: 1087 LKGDNLLQMIISALKILDAS-PA 1108
>gi|425738706|ref|ZP_18856963.1| transcription-repair coupling factor [Staphylococcus massiliensis
S46]
gi|425478977|gb|EKU46159.1| transcription-repair coupling factor [Staphylococcus massiliensis
S46]
Length = 1170
Score = 451 bits (1159), Expect = e-123, Method: Compositional matrix adjust.
Identities = 256/631 (40%), Positives = 388/631 (61%), Gaps = 30/631 (4%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L+ GDYVVH G+G+++G++ DV +D Y+ I+Y G +L P
Sbjct: 490 KIKSYQDLKVGDYVVHVHHGVGRYLGVETLEVGDVHRD------YIKIQYK-GTDQLFVP 542
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K P+ L KL + W++ K K + +I+ + +L+E+Y R +
Sbjct: 543 VDQMEQ-VQKY-VGSEDKTPK-LYKLG-GSEWKKTKAKAQSSIEDIADELLEIYKER--E 596
Query: 261 KRPPYPKNPAIAE---FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKT 317
+ Y P E F FPYE TPDQ K+ +++ D+ E PMDRL+CGDVG+GKT
Sbjct: 597 QSVGYQFGPDTEEQQTFEMDFPYELTPDQDKSISEIKGDM-EVNKPMDRLLCGDVGYGKT 655
Query: 318 EVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEE 377
EVA+RA F V GKQ L PT +LA+QH++ + ER S YP I + L+SRF++ E +
Sbjct: 656 EVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMSDYP-IDIELMSRFRTTKEVNQ 714
Query: 378 HLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTL 437
+ +K G ++I+VGTH LLG V Y +LGLL+VDEEQRFGV+ KEKI + K +VDVLTL
Sbjct: 715 TKEGLKSGKVDIVVGTHKLLGKSVQYKDLGLLIVDEEQRFGVRHKEKIKALKANVDVLTL 774
Query: 438 SATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFY 497
+ATPIPRTL++++ G RD S+I TPP R P++T++ + + A+ EL R GQVFY
Sbjct: 775 TATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNANFIKEALLRELSRDGQVFY 834
Query: 498 VLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 557
+ R++ + E + LQ P I +AHGQ R LEETM F G IL+ T I+E+G
Sbjct: 835 LYNRVQSIYEKREQLQMLVPDASIGVAHGQMTERDLEETMLDFINGDYDILVTTTIIETG 894
Query: 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALE 617
+D+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +LS+ A ERL A++
Sbjct: 895 VDVPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPQNKVLSETAEERLQAIK 954
Query: 618 ECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS-KVDEHCVIS 676
E ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E+++ K V
Sbjct: 955 EFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEVEE 1014
Query: 677 VPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEP 736
P +++++N++ LP YI + + +E+ + + I L + L ++G+ P
Sbjct: 1015 TP--DIEMNLNLDAYLPGSYIKNEQAKIEIYKKLRTL--ESIEQLRDVKDELIDRFGEYP 1070
Query: 737 YSMEILLKKLYVRRMAADIGITKIYASGKMV 767
+E LL + ++ A G+ I K +
Sbjct: 1071 VEVERLLDSVEIKIHAVHSGVLTISDKNKSI 1101
>gi|456012106|gb|EMF45823.1| Transcription-repair coupling factor [Planococcus halocryophilus Or1]
Length = 1161
Score = 451 bits (1159), Expect = e-123, Method: Compositional matrix adjust.
Identities = 247/626 (39%), Positives = 389/626 (62%), Gaps = 14/626 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQAS 205
++ YS ++ GDY+VH GIG+FVGI + + V +Y+ I Y AD +PV +
Sbjct: 493 RIKSYSEIKPGDYIVHIHHGIGRFVGI--ETLESGGVHKDYLHIVYKADDKLFVPVDKID 550
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
++ +Y + +E K P+ L K+ W++ +TK A+Q + DL++LY R + +
Sbjct: 551 -LIQKY-IASEEKEPK-LHKMGGA-EWKKTRTKVSAAVQDIADDLIKLYAEREALRGFAF 606
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
+ + +F A+FPYE T DQ ++ +V+RD+ E E PMDRLICGDVG+GKTEVA+RA
Sbjct: 607 SEEQDMQRQFEAEFPYEETVDQLRSINEVKRDM-ENERPMDRLICGDVGYGKTEVAIRAG 665
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V GKQ L PT +LA+QHF+ +SERF YP I VGL+SRF+SK ++ E + +K+
Sbjct: 666 FKAVLDGKQVAFLVPTTILAQQHFETMSERFKDYP-ITVGLMSRFRSKKQQTETVKGLKN 724
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I+VGTH +L + Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPR
Sbjct: 725 GSVDIVVGTHRILSKDMQYKDLGLLIIDEEQRFGVTHKEKIKQMKTNVDVLTLTATPIPR 784
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R P+++++ + V AI+ E+ RGGQVFY+ R+
Sbjct: 785 TLHMSMIGVRDLSVIETPPANRFPVQSYVMEHNGALVREAIEREMARGGQVFYLYNRVDD 844
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+ ++ +QQ P + AHGQ +LE + F G +L+ T I+E+G+DI N N
Sbjct: 845 MTRKVEEIQQLVPEARVGYAHGQMSETELESVILSFLDGDYDVLVTTTIIETGIDIPNVN 904
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+IV + + GL+QLYQLRGRVGR+ + A+AY Y +L+D A +RL A++E ELG
Sbjct: 905 TLIVYNADRMGLSQLYQLRGRVGRSSRVAYAYFMYQRDKVLTDVAEKRLMAIKEFTELGS 964
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + + V ++I
Sbjct: 965 GFKIAMRDLTIRGAGNLLGSQQHGFIDSVGFDLYSQMLQEAIDE-RQTGVKKEVIPEIEI 1023
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
++++ +P YI+ ++M + ++ + + + L ++G P + LL+
Sbjct: 1024 SLDVDAYIPDAYISDGYQKIQMYKRVKGIETEE--EMRELQDELIDRFGDMPTETDSLLR 1081
Query: 745 KLYVRRMAADIGITKIYASGKMVGMK 770
++ A ++G+ + +GK+V ++
Sbjct: 1082 IARMKVWAREVGVESLKQNGKLVSVR 1107
>gi|299820651|ref|ZP_07052540.1| transcription-repair coupling factor [Listeria grayi DSM 20601]
gi|299817672|gb|EFI84907.1| transcription-repair coupling factor [Listeria grayi DSM 20601]
Length = 1186
Score = 451 bits (1159), Expect = e-123, Method: Compositional matrix adjust.
Identities = 272/692 (39%), Positives = 411/692 (59%), Gaps = 42/692 (6%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYAD----GMAKL--P 200
++ YS L+ GDYVVH GI ++VG++ T+ I V +Y + G KL P
Sbjct: 501 RIQSYSELKVGDYVVHINHGIARYVGME-------TLNIGGVHKDYLNLIYQGEDKLFVP 553
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q M+ +Y + +E K PR L KL T W+R K+K K ++Q + DL++LY R +
Sbjct: 554 VDQLE-MIQKY-VGSEGKAPR-LHKLGGT-EWKRVKSKVKASVQDIADDLIKLYAEREAE 609
Query: 261 KRPPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
K + P + EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEV
Sbjct: 610 KGYAFTPDSEMQREFEDAFPYQETDDQIRSIKEIKKDM-ERPRPMDRLLVGDVGYGKTEV 668
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
ALRA F + GKQ L PT +LA+QH++ + ERF +P I+VGLLSRF++K ++ E L
Sbjct: 669 ALRAAFKAIMDGKQVAFLVPTTILAQQHYETMKERFQGFP-IEVGLLSRFRTKKQQNETL 727
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G ++I+VGTH LL VVY++LG LVVDEEQRFGV KEKI + + +DVLTL+A
Sbjct: 728 EGLKKGTVDIVVGTHRLLSKDVVYSDLGFLVVDEEQRFGVTHKEKIKTIRAKIDVLTLTA 787
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T+++ + + AI+ EL R GQV+Y+
Sbjct: 788 TPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAERNNVMIREAIERELAREGQVYYLY 847
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
R++ + + D + P +A AHGQ +LE + F +G +L+ T I+E+G+D
Sbjct: 848 NRVESIVQKADEISALVPDARVAFAHGQMTETELESVIVSFLEGEYDVLVTTTIIETGVD 907
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
I N NT+ VQD + GL+QLYQLRGRVGR+++ A+AY Y +L ++A +RL A++E
Sbjct: 908 IPNVNTLFVQDADRMGLSQLYQLRGRVGRSNRIAYAYFMYQKDKVLREEAEKRLQAIKEF 967
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISV 677
ELG GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ + E V
Sbjct: 968 TELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEARQPSEERKERV 1027
Query: 678 PYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPY 737
P +V+ID+ ++ +P YI+ +EM E+D L + L ++G P
Sbjct: 1028 P--TVEIDLELDAYIPEYYISDGRQKIEMYKRFRSITERD--ELEELQADLIDRFGDYPD 1083
Query: 738 SMEILLKKLYVRRMAADIGITKIYASGKMV-------GMKTNMNKKVFKMMIDSMTSEVH 790
+E L+ ++ A +G+ + K V G + KV + + SE
Sbjct: 1084 EVEYLVTITELKIAALIVGVESVKQEPKKVTILLSDKGTQQIQGDKVMQTI-----SEYG 1138
Query: 791 RN-SLTFEGDQIKAELLLELPREQLLNWIFQC 821
RN + EG ++K L + + R+Q W+ Q
Sbjct: 1139 RNVGIGMEGTRLK--LTMNIQRKQQKEWLEQL 1168
>gi|402814489|ref|ZP_10864083.1| transcription-repair-coupling factor Mfd [Paenibacillus alvei DSM 29]
gi|402508336|gb|EJW18857.1| transcription-repair-coupling factor Mfd [Paenibacillus alvei DSM 29]
Length = 1176
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 247/625 (39%), Positives = 387/625 (61%), Gaps = 16/625 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH+ GIGK++GI + + + +Y+ I YA G +PV Q ++ RY
Sbjct: 491 LKVGDYVVHQNHGIGKYIGI--GTLEINGIHKDYLHILYAGGDKLSVPVDQL-HLIQRY- 546
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAI 271
+ +E K P+ + KL T W + K K + +++ + DL++LY R + K+ P
Sbjct: 547 VSSEEKEPK-IYKLGGTE-WTKVKNKVRSSVKDIADDLIKLYAARQASSGYAFEKDTPEQ 604
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY+ T DQ +A ++++D+ E+ +PMDRL+CGDVG+GKTEVA+RA F G
Sbjct: 605 REFEDMFPYDETRDQLRAIEEIKQDM-EKPSPMDRLLCGDVGYGKTEVAVRAAFKAAIEG 663
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT +LA+QH++ ERF+ YP + +LSRF+S+ E+ E + +K G ++II+
Sbjct: 664 KQVAILVPTTILAQQHYETFRERFADYP-FNIQVLSRFRSRKEQNESMKGLKSGVVDIII 722
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL VV+ +LGLL+VDEEQRFGV KEK+ K++VDVLTL+ATPIPRTL++++
Sbjct: 723 GTHRLLSQDVVFKDLGLLIVDEEQRFGVTHKEKLKKLKMNVDVLTLTATPIPRTLHMSML 782
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T++ +S V AI+ EL RGGQV+++ R++G+ + D
Sbjct: 783 GVRDLSVIETPPENRFPVQTYVLEYSDNLVREAIERELARGGQVYFLFNRVQGIHQMADH 842
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
++ P + ++HGQ +LE+T+ F G +L+ T+I+E+G+DI N NT+IV D
Sbjct: 843 IKMLVPDARVTVSHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA 902
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +
Sbjct: 903 DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLNEVAEKRLQAIKEFTELGSGFKIAMR 962
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISVPYKSVQIDIN 687
D+ IRG G + G +Q G + +VG DL+ +ML + ++K +D + + ID+N
Sbjct: 963 DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLADEVNKRKAEIDGVAIEDQQELTTLIDLN 1022
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
++ LP YI +E+ + A D + + + L ++G+ P ++ LL
Sbjct: 1023 VDAYLPPNYIYDSIQKIEIYKKVAGLATLD--EVEELRDELIDRFGEPPLAVLQLLAVAR 1080
Query: 748 VRRMAADIGITKIYASGKMVGMKTN 772
++ A G I G MV +K +
Sbjct: 1081 LKLYAKQYGWESIVQRGDMVTIKVH 1105
>gi|428181379|gb|EKX50243.1| hypothetical protein GUITHDRAFT_104057 [Guillardia theta CCMP2712]
Length = 555
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 230/530 (43%), Positives = 350/530 (66%), Gaps = 10/530 (1%)
Query: 150 DPYSL-RSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRML 208
DP SL + + VVH + GI K++ +++ +D P ++ +++ADG+ K Q S M+
Sbjct: 27 DPTSLFKQNELVVHSQHGIAKYLRVEYMSMQDE-APKPFMVLQFADGVLKESFTQQS-MV 84
Query: 209 YRY---NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
+Y + + P+ L LS W +RK K K ++K+ D+++L R + KR PY
Sbjct: 85 TKYFASGVGYAAEEPK-LDHLSRPEVWTKRKAKAKRTLKKLAHDVIKLQAVRKQNKREPY 143
Query: 266 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
+F FP+EPT DQ KAF D+E+DL R+ PMDRL+CGDVGFGKTEVA+RA+F
Sbjct: 144 KMPGHKTDFDDLFPHEPTADQLKAFRDIEQDLCSRDIPMDRLVCGDVGFGKTEVAMRALF 203
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
VS +QA++LAPT VLA QHF V RF + ++ LL+RF + E L + G
Sbjct: 204 LCVSQQRQAILLAPTTVLAIQHFRTVQSRFKSF-GLRPALLNRFVPAKTRRELLQQVADG 262
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++I+VGTH++L S++ + +LGL+V+DEEQRFGV QKEK+ + + +DVLTLSATPIPRT
Sbjct: 263 EVDILVGTHAVLSSKISFRSLGLVVIDEEQRFGVNQKEKLKTLSVGIDVLTLSATPIPRT 322
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L++A++G RD +++ TPP + ++TH++ FS+ ++ A++ ELDR GQ F V+PRI +
Sbjct: 323 LHMAMSGLRDMTVMRTPPRSKKEVETHVAKFSERLLLKALQLELDRAGQTFCVVPRIADI 382
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
++ + L + P + +AHG+ + LEE + KF++G +L+CT I+ESGLDI ANT
Sbjct: 383 DQVVATLYRLAPAARVLVAHGEL--KDLEERLIKFSEGGADVLVCTPIIESGLDIHTANT 440
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
I V + FGL+ LYQLRGRVGR +AHAY +P S LS ++ +RLAA+ LG G
Sbjct: 441 IFVFNSHYFGLSSLYQLRGRVGRGSTQAHAYFTFPPDSELSSESQQRLAAITRYTSLGSG 500
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVI 675
++LA++D+ IRG G++ G +Q+G+ VGV+L+ +ML E +++++E +I
Sbjct: 501 YELAQRDLEIRGAGSLLGAEQSGEANEVGVELYMQMLKEIVAEIEEKAII 550
>gi|296329557|ref|ZP_06872043.1| transcription-repair coupling factor [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305672754|ref|YP_003864425.1| transcription-repair coupling factor [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296153300|gb|EFG94163.1| transcription-repair coupling factor [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305410997|gb|ADM36115.1| transcription-repair coupling factor [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 1177
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/563 (42%), Positives = 368/563 (65%), Gaps = 14/563 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQIGDYVVHINHGIGKYLGI--ETLEINGIHKDYLNIHY-QGSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLGGS-EWKRVKKKVETSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + EF + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQREFESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + GKQ +L PT +LA+QH++ ++ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIGDGKQVALLVPTTILAQQHYETITERFQDYP-INIGLLSRFRTRKEANETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P +A AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVAYAHGKMTENELETVMLNFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + +V +++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTVQFET-E 1022
Query: 684 IDININPRLPSEYINHLENPMEM 706
ID+ ++ +P YI + ++M
Sbjct: 1023 IDVELDAYIPETYIQDGKQKIDM 1045
>gi|328956088|ref|YP_004373421.1| transcription-repair coupling factor [Coriobacterium glomerans PW2]
gi|328456412|gb|AEB07606.1| transcription-repair coupling factor [Coriobacterium glomerans PW2]
Length = 1187
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 250/646 (38%), Positives = 394/646 (60%), Gaps = 15/646 (2%)
Query: 151 PYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLY 209
PY + GDYVVH GIG+F I Q+ + +Y +EYADG +P++Q R +
Sbjct: 507 PY--QPGDYVVHATHGIGRFASIVR--QEVGGLERDYFLLEYADGDKLYVPLEQVDR-IT 561
Query: 210 RYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKN 268
RY P+ + PR L++L +T W R + + + +++ DL++LY R + P
Sbjct: 562 RYVGPDGSS-PR-LTRL-NTADWSRATVRARNSAKRLAFDLVDLYTRRSTVAGHAFAPDT 618
Query: 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328
PA E FPYEPT DQ +A D++ D+ E PMDRL+CGDVGFGKTEVALRA F V
Sbjct: 619 PAQLEMEQAFPYEPTRDQIEAIGDIKADM-EAPKPMDRLLCGDVGFGKTEVALRAAFKCV 677
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 388
G Q MVL PT +LA+QH++ + ERF+ + DI+V +LSRF++ +E L G ++
Sbjct: 678 DNGYQVMVLCPTTILAQQHYETLFERFAPF-DIEVEVLSRFRTPSELSAALAGFSDGSVD 736
Query: 389 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 448
++VGTH LL S V ++LGL+++DEEQRFGV+ KE++ + + +DVLTLSATPIPRT+ +
Sbjct: 737 VLVGTHRLLSSDVNPHSLGLVIIDEEQRFGVQHKEQLKNLREQIDVLTLSATPIPRTMQM 796
Query: 449 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 508
A++G RD SLI+TPP R P+ H+ + + V +AI++EL R GQV+YV R+K +E+
Sbjct: 797 AMSGVRDMSLITTPPCGRRPVTVHVGEYDPDTVSAAIRFELAREGQVYYVSNRVKTIEDA 856
Query: 509 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 568
+D + +A P + +AHG+ SR++EETM F I +L+ T I+ESG+D + NT+I+
Sbjct: 857 IDRVHEAAPEARVGVAHGKMSSREVEETMIDFTAHRIDVLVATTIIESGIDNPHTNTLII 916
Query: 569 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 628
+D Q+ GLAQLYQL+GRVGR+ +A AY +P + L+ +A ERL AL E +ELG G ++
Sbjct: 917 EDAQRLGLAQLYQLKGRVGRSASQAFAYFMFPGEQPLTQEATERLCALSEFQELGSGMRI 976
Query: 629 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDINI 688
A +D+ IRG G++ G +Q G++ NVG DLF +ML +++++ + V I++
Sbjct: 977 AMRDLEIRGAGSLVGAEQHGNLSNVGFDLFTQMLGQAVAEARGEGASEMSESGVTINLPA 1036
Query: 689 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+ L Y+ ++ + + + AA D+ + + + G+ P + L + +
Sbjct: 1037 DFFLDEAYLRDVDRRVLLYRKLAAAA--DLRTVDEAQQECEADNGELPLAGRNLFDRARL 1094
Query: 749 RRMAADIGITKI-YASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNS 793
R A +G+ + A+G++ ++ + + + + + V+ S
Sbjct: 1095 RIRADRLGLESVSLAAGRLTFTGIDVRAPIAAALRERLGAIVYPKS 1140
>gi|363893676|ref|ZP_09320771.1| transcription-repair coupling factor [Eubacteriaceae bacterium
ACC19a]
gi|361963478|gb|EHL16550.1| transcription-repair coupling factor [Eubacteriaceae bacterium
ACC19a]
Length = 1086
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 250/616 (40%), Positives = 384/616 (62%), Gaps = 14/616 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GD VVH+ GIGKFVGI + +++ V +Y+ + Y G +P+ Q R + RY
Sbjct: 450 LKKGDIVVHEVYGIGKFVGI--EQKENDGVKKDYIKVSYKGGDFIYVPISQMDR-VQRY- 505
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ N + R +L++L ++ W+++K K K A+ ++ L+ELY R QK + K+
Sbjct: 506 IGNASDRI-SLTQLG-SSQWKKQKQKAKKAVDEIAKYLIELYAQRENQKGYAFSKDTVWQ 563
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A FP+E T DQ K+ D+++D+ E PMDRLICGDVG+GKTEVALR IF
Sbjct: 564 REFEALFPFEETQDQLKSIKDIKKDM-ENIKPMDRLICGDVGYGKTEVALRGIFKACMDQ 622
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH+ +S+RF YP I V +LSRF++K E+E ++ +K+G +++I+
Sbjct: 623 KQVAFLVPTTILAQQHYKTLSDRFENYP-INVDVLSRFKTKKEQEITIEKVKNGEVDVII 681
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + ++G+LV+DEEQRFGVK KEKI K ++DVLTL+ATPIPRTL ++L+
Sbjct: 682 GTHRLLSKDVEFKDIGMLVIDEEQRFGVKHKEKIKQIKSNIDVLTLTATPIPRTLNMSLS 741
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ PP +R PI T+++ + ++ AI+ E+ R GQVF+V ++ +++ +F
Sbjct: 742 GIRDMSVLEEPPNDRYPIITYVTEAREGIILDAIEREIARNGQVFFVYNSVENIDKMYNF 801
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P IAIAHGQ + LE+ M + + +L+CT I+E+G+DI NANTIIV +
Sbjct: 802 IQKLVPSARIAIAHGQMSAIALEDIMMDYLEKKYDVLLCTTIIETGMDISNANTIIVYNA 861
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+ ++A+AYL Y +L++ A +RL A+ E E G GF++A
Sbjct: 862 DKMGLSQLYQLRGRVGRSSRQAYAYLMYEKDKVLTEIAQKRLKAIREFTEFGSGFRVAMM 921
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G I GE Q G + VG DL+ +ML +S +++ V S ++ +N+N
Sbjct: 922 DLEIRGSGNILGEVQHGHIEEVGYDLYIKMLNDSFNRLKGKTVEEKV--STEVYLNVNAY 979
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
+P YI +E+ + ++ + +Q + ++ P +E LLK +R +
Sbjct: 980 IPDNYIEDEIQKIEIYKKIASINSKEDYFDIQ--AEIEDRFSNIPQEVENLLKISSIRSL 1037
Query: 752 AADIGITKIYASGKMV 767
IGI KI + +
Sbjct: 1038 GEKIGIEKISQKNRTI 1053
>gi|379794974|ref|YP_005324972.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MSHR1132]
gi|356871964|emb|CCE58303.1| Transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus MSHR1132]
Length = 1168
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 249/631 (39%), Positives = 393/631 (62%), Gaps = 25/631 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKER--EMAEG 598
Query: 265 YPKNPAIAE---FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
Y P AE F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+
Sbjct: 599 YQFGPDTAEQTTFELDFPYELTPDQAKSIDEIKEDM-QKSRPMDRLLCGDVGYGKTEVAV 657
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ +
Sbjct: 658 RAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEG 716
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+K G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATP
Sbjct: 717 LKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATP 776
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL++++ G RD S+I TPP R P++T++ + + A++ EL RGGQVFY+ +
Sbjct: 777 IPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRGGQVFYLYNK 836
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+
Sbjct: 837 VQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVP 896
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E E
Sbjct: 897 NANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTE 956
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP--- 678
LG GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E+ V+E I P
Sbjct: 957 LGSGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEA---VNEKRGIKEPEPD 1013
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
V++D+N++ LP+EYI + + +E+ + K + +M + L ++ P
Sbjct: 1014 VPEVEVDLNLDAYLPTEYITNEQAKIEIYKKLRKTETHE--QIMDIKDELIDRFNDYPVE 1071
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKMVGM 769
+E LL + ++ A GIT I GK + +
Sbjct: 1072 VERLLDIVEIKVHALHAGITLIKDKGKTIDI 1102
>gi|429765475|ref|ZP_19297767.1| transcription-repair coupling factor [Clostridium celatum DSM 1785]
gi|429186294|gb|EKY27245.1| transcription-repair coupling factor [Clostridium celatum DSM 1785]
Length = 816
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 261/676 (38%), Positives = 408/676 (60%), Gaps = 17/676 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH GIG F GIK DV ++ +Y+ I Y G +PV Q ++ +Y
Sbjct: 147 LKPGDYVVHANHGIGVFKGIKQIDVAGNTR---DYLDIVYDKGDKLYVPVDQLD-LVQKY 202
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E P+ ++KL T W++ K K + +I ++ DL++LY R K Y K+
Sbjct: 203 -IGSEGNTPK-INKLG-GTEWQKAKAKVRKSINEIAEDLVKLYATRAALKGYKYSKDTEW 259
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FPYE TPDQ + ++++D+ E + PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 260 QKQFEDEFPYEETPDQLSSLEEIKKDM-ESDKPMDRLLCGDVGYGKTEVAIRAAFKAVMD 318
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH+ +++RFS +P +K+ ++SRF+S E+ L +K G+++I+
Sbjct: 319 GKQVAFLVPTTILAEQHYKNLTKRFSDFP-VKIDMISRFRSTKEQRATLKALKEGNVDIL 377
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ + + +LGLL+VDEEQRFGV QKEKI + K +VDVLTLSATPIPRTL+++L
Sbjct: 378 IGTHRLVSKDIEFKDLGLLIVDEEQRFGVAQKEKIKNLKKNVDVLTLSATPIPRTLHMSL 437
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG RD S+I TPP ER PI+T++ + + + AI E+ RGGQV++V R++ +E +
Sbjct: 438 TGVRDISVIETPPEERYPIQTYVVEQNDQLIRDAILREMGRGGQVYFVYNRVESIEGMAN 497
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
++++ P + I HGQ ++LE M F +L+CT I+E+G+DI N NT+IV +
Sbjct: 498 YIRELVPECKVGIIHGQMTEKELETEMMNFMNKEYDVLVCTTIIETGIDIPNVNTMIVNN 557
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL AL++ ELG GF++A
Sbjct: 558 ADKMGLSQLYQLRGRVGRSNRIAYAYFIYTKDKVLTEIAEKRLKALKDFTELGSGFKIAM 617
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G Q G + +G DL+ ML E K+ + + P ++ +DI I+
Sbjct: 618 RDLEIRGAGNMMGSSQHGHMAAIGYDLYCRML-EDTVKLIKGEIDKEPIETT-VDIKIDA 675
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+PS YI +E+ + AA + + E L +Y P ++ L+ Y++
Sbjct: 676 YIPSSYIQDEIQKIEIYKKI--AAIESLEEYQDIKEELEDRYSALPEAVYNLMDIAYIKS 733
Query: 751 MAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGD-QIKAELLLEL 809
+A ++ I +I + K V K K F + + + N + + GD A L +
Sbjct: 734 LAKELLIEEIKETPKEVRFKFQQGYKDFNNIYKILLKKYKENIILYFGDIPFFAIKLNTI 793
Query: 810 PREQLLNWIFQCLAEL 825
+E+ +N+ + L EL
Sbjct: 794 KKEEAINFYKEILKEL 809
>gi|357014642|ref|ZP_09079641.1| Mfd [Paenibacillus elgii B69]
Length = 1174
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 253/619 (40%), Positives = 375/619 (60%), Gaps = 19/619 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIGKFVGI + + +Y+ I YA G +P+ Q + +Y
Sbjct: 488 LKIGDYVVHVNHGIGKFVGI--GTLEVGGIHKDYLHILYAGGDKLSVPIDQIDH-VQKYV 544
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E K P+ + KL W R K+K + ++Q + DL++LY R Q Y N
Sbjct: 545 GSEEGKEPK-VYKLGGAD-WNRVKSKARASVQDIADDLIKLYAER--QATLGYAFNHDSN 600
Query: 272 --AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF FPYE T DQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 601 YQQEFEGMFPYEETSDQLRAIEEIKKDM-EKPRPMDRLLCGDVGYGKTEVAIRAAFKAAI 659
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQ VL PT +LA+QH++ ERFS YP + +LSRF+SK E+ E + IK+G +++
Sbjct: 660 DGKQVAVLVPTTILAQQHYETFRERFSGYP-FNIQVLSRFRSKKEQTETMKGIKNGTVDV 718
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH LL V + +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL+++
Sbjct: 719 VIGTHRLLSKDVQFKDLGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMS 778
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
+ G RD S+I TPP R P++T++ +S V AI+ EL R GQV+Y+ R++G+ +
Sbjct: 779 MLGVRDLSVIETPPENRFPVQTYVVEYSASLVREAIERELAREGQVYYLFNRVQGITQMA 838
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
D + P + +AHGQ ++LE+T+ F G +L+ T+I+E+G+DI N NT+IV
Sbjct: 839 DQISMLVPDARVTVAHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVH 898
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A
Sbjct: 899 DADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIA 958
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISVPYKSVQID 685
+D+ IRG G + G +Q G + +VG DL+ +ML E + K + V S Q+D
Sbjct: 959 MRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIQKRKKELGGEAVQETKVWSTQLD 1018
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
I ++ +P +YI +E+ + AA Q + M+ + L ++G P +++ LL
Sbjct: 1019 IQLDAYIPGDYIYDSVQKIEIYKKV--AAIQSLDEAMELEDELVDRFGDLPDAVQNLLTA 1076
Query: 746 LYVRRMAADIGITKIYASG 764
++ A GI I G
Sbjct: 1077 ARLKVYGALYGIEIISQKG 1095
>gi|424740019|ref|ZP_18168431.1| transcription-repair coupling factor [Lysinibacillus fusiformis ZB2]
gi|422946391|gb|EKU40802.1| transcription-repair coupling factor [Lysinibacillus fusiformis ZB2]
Length = 1170
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 248/619 (40%), Positives = 381/619 (61%), Gaps = 19/619 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRMLYRYN 212
++ GDYVVH GIGK++G++ ++ + T +Y+ I Y AD +PV+Q ++ +Y
Sbjct: 497 IKPGDYVVHVHHGIGKYIGVE-TLEVNGTHK-DYLHIRYRADDKLYVPVEQID-LIQKY- 552
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E + P+ L KL W++ K K A+Q + DL++LY R +K + P N
Sbjct: 553 VASEDREPK-LHKLG-GAEWKKAKAKVSSAVQDIADDLIKLYAKREAEKGHAFTPDNDDQ 610
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
F A FPYE T DQ ++ ++V+RD+ ERE PMDRL+CGDVG+GKTEVA+RA F + G
Sbjct: 611 RNFEAMFPYEETEDQLRSIVEVKRDM-ERERPMDRLVCGDVGYGKTEVAIRAAFKAIQDG 669
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF + I VGLLSRF+SK E+ L +K G ++I++
Sbjct: 670 KQVAFLVPTTILAQQHYETIRERFQGFA-INVGLLSRFRSKKEQTATLKGLKEGRVDIVI 728
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L +++ +LGLL+VDEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++
Sbjct: 729 GTHRILSKDLIFQDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIPRTLHMSMV 788
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T++ S V AI+ E+ RGGQVFY+ R++ + ++
Sbjct: 789 GVRDLSVIETPPANRFPVQTYVMEHSGALVREAIEREMARGGQVFYLYNRVEDMARRVEE 848
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q P I AHG+ +LE + F +G +L+ T I+E+G+DI N NT+IV D
Sbjct: 849 IQVLVPEARIGFAHGKMTESELESVILAFLEGDYDVLVTTTIIETGVDIPNVNTLIVHDA 908
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GLAQLYQLRGRVGR+++ A+AY Y +L+D A +RL A++E ELG GF++A +
Sbjct: 909 DRMGLAQLYQLRGRVGRSNRVAYAYFMYQRDKVLTDVAEQRLQAIKEFTELGSGFKIAMR 968
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + +VG DL+ +ML +++++ + V ++I ++I+
Sbjct: 969 DLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLQDAIAE-RQTGVKKEEKPDIEILLSIDAY 1027
Query: 692 LPSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+P YI ++M + ++ E D + E L ++G P E LL+ +
Sbjct: 1028 IPDAYIPDGYQKIQMYKRIKAMDQVEEYD-----EIMEELEDRFGDLPIETERLLRIARM 1082
Query: 749 RRMAADIGITKIYASGKMV 767
+ G+ + K++
Sbjct: 1083 KVWGLGAGVVSVKEKQKLI 1101
>gi|423315787|ref|ZP_17293692.1| transcription-repair coupling factor [Bergeyella zoohelcum ATCC
43767]
gi|405585503|gb|EKB59327.1| transcription-repair coupling factor [Bergeyella zoohelcum ATCC
43767]
Length = 1129
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 249/626 (39%), Positives = 376/626 (60%), Gaps = 25/626 (3%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLY 209
D SL+ GDY+ H GIGKF+G+ V D V E + Y +G A +
Sbjct: 439 DLMSLKVGDYITHIDHGIGKFMGL-VKVNNDGKVQ-ECFKLTYKNGDLLYVSIHALHKIS 496
Query: 210 RYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKN 268
+YN P+ + TLSKL + AW+ K K K ++++ DL++LY R K + P
Sbjct: 497 KYNGPD--GKEITLSKLG-SPAWKNLKQKTKAKVKQIAFDLIKLYAKRKTAKGFAFTPDT 553
Query: 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328
E A F YE TPDQ+KA DV++D+ E ET MDRL+CGDVGFGKTEVA+RA F V
Sbjct: 554 YLQNELEASFLYEDTPDQEKATADVKKDM-EAETIMDRLVCGDVGFGKTEVAIRAAFKAV 612
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 388
+ GKQ VL PT +LA QH+ ER +P + + L+RF++ +K+E L+ ++ G+L+
Sbjct: 613 TDGKQVAVLVPTTILAFQHYRSFQERLKDFP-VNISYLNRFRTAKQKKETLERLESGNLD 671
Query: 389 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 448
I++GTH L+ +V + +LGLL++DEE +FGV K+K+ + K ++D LTL+ATPIPRTL
Sbjct: 672 IVIGTHQLVSDKVKFKDLGLLIIDEEHKFGVSVKDKLKTLKSNIDTLTLTATPIPRTLQF 731
Query: 449 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 508
+L RD S+I TPPP R P++T L F++E + AI YE+ R GQV++V RI+ L+E
Sbjct: 732 SLMAARDLSVIKTPPPNRQPVETQLIGFNEEVIRDAISYEIQRDGQVYFVNNRIENLKEM 791
Query: 509 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 568
+Q+ P + HGQ ++LEE + F +G +L+ T IVESG+D+ NANTI +
Sbjct: 792 AGLIQRLVPDARVITGHGQMDGKELEERILDFMEGKYDVLVSTTIVESGVDVPNANTIFI 851
Query: 569 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 628
D Q+FG+A L+Q+RGRVGR++++A YL P +++ A +RL A+E+ +LG GFQ+
Sbjct: 852 NDAQKFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSGFQI 911
Query: 629 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY--------- 679
A KD+ IRG G + G +Q+G + +G + + +++ E+L ++ +
Sbjct: 912 AMKDLEIRGAGDLLGGEQSGFINEMGFEAYQKIMQEALEELQHEEDFDTLFEDKEDRKKL 971
Query: 680 ----KSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGK 734
K V ID ++ LP +YI+ +E + + + AE EQD L +F L ++G
Sbjct: 972 FKSTKEVNIDTDLELMLPDDYISSIEERLSLYQKLAEIQNEQD---LQRFGNELEDRFGA 1028
Query: 735 EPYSMEILLKKLYVRRMAADIGITKI 760
P LLK + ++ +AA+IG KI
Sbjct: 1029 MPEEAINLLKSVELKWLAAEIGFEKI 1054
>gi|332981377|ref|YP_004462818.1| transcription-repair coupling factor [Mahella australiensis 50-1 BON]
gi|332699055|gb|AEE95996.1| transcription-repair coupling factor [Mahella australiensis 50-1 BON]
Length = 1159
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 251/616 (40%), Positives = 383/616 (62%), Gaps = 20/616 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L GDYVVH+ GIG+++GIK V+ S +Y+FI YADG +P + S ++ RY
Sbjct: 489 LNIGDYVVHENYGIGQYMGIKKLTVEGKSR---DYLFIRYADGDNLYVPTDRMS-LVQRY 544
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
+ + PR LSKL + W + K K + +++KM +L++LY R K + P
Sbjct: 545 -IGGDGASPR-LSKLG-GSEWSKTKAKVRESVRKMAGELLKLYASRYTTKGHAFSPDTVW 601
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
A+ FPY+ TPDQ +A +++ D+ E + PMDRL+CGDVG+GKTEVALRA F V
Sbjct: 602 QAQLEESFPYQETPDQLQAIEEIKADM-ESDKPMDRLLCGDVGYGKTEVALRAAFKAVMD 660
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ VL PT VLA+QH++ + R + +P IKV ++SRF+S E+++ + +K G ++II
Sbjct: 661 GKQVAVLVPTTVLAQQHYNTFTNRLAGFP-IKVDVISRFRSVQEQKDIVKGLKSGDIDII 719
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH+LL S V +++LGLL+VDEEQRFGV KE I FK +VDVLTL+ATPIPRTL+++L
Sbjct: 720 IGTHALLSSNVKFHDLGLLIVDEEQRFGVSHKEAIKRFKNNVDVLTLTATPIPRTLHMSL 779
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
+G RD S+I TPP +R P++T++ + + + AI EL RGGQV++V RI ++
Sbjct: 780 SGIRDISIIETPPEDRYPVQTYVVEYDENIIRDAILKELGRGGQVYFVYNRINSIDVMAI 839
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L + P IA+AHG+ +LE M F G +L+CT I+E+GLDI N NT+IV D
Sbjct: 840 HLHELVPEARIAVAHGRMGDDKLERVMMDFMDGYYDVLLCTTIIETGLDIPNVNTLIVYD 899
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGLAQLYQLRGRVGR+++ A+AY Y +L+++A +RL A+ E E G GF++A
Sbjct: 900 ADHFGLAQLYQLRGRVGRSNRLAYAYFTYKKDRVLTEEAEKRLHAITEFTEFGSGFKIAL 959
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ--IDINI 688
+D+ IRG G + G +Q G + VG D++ ++L E+++++ P + + I+I +
Sbjct: 960 RDLEIRGAGNLLGAEQHGHMAAVGYDMYCKLLEEAIAQLKGET----PEEEIDTSIEIKL 1015
Query: 689 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+ +P +Y+ +E+ ++ + ++ R +G P S+ LL +++
Sbjct: 1016 DAYIPDDYVPSEAQRIEIYKRIMSISDIEEEYDVEEEIEDR--FGDIPQSVRNLLSIMHI 1073
Query: 749 RRMAADIGITKIYASG 764
+ ++ IGI I G
Sbjct: 1074 KLLSKKIGIVSIEQKG 1089
>gi|363890537|ref|ZP_09317864.1| transcription-repair coupling factor [Eubacteriaceae bacterium CM5]
gi|361964913|gb|EHL17913.1| transcription-repair coupling factor [Eubacteriaceae bacterium CM5]
Length = 1127
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 249/616 (40%), Positives = 383/616 (62%), Gaps = 14/616 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GD VVH+ GIGKF+GI + +++ + +Y+ + Y G +P+ Q R + RY
Sbjct: 491 LKKGDIVVHEVYGIGKFIGI--EQKENDGIKKDYIKVSYKGGDFIYVPISQMDR-VQRY- 546
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ N + R +L++L + W+++K K K A+ ++ L+ELY R QK + K+
Sbjct: 547 IGNASDRI-SLTQLG-SNQWKKQKQKAKKAVDEIAKYLIELYAERENQKGYAFSKDTVWQ 604
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A FP+E T DQ K+ D++RD+ E PMDRLICGDVG+GKTEVALR IF
Sbjct: 605 REFEALFPFEETQDQLKSIKDIKRDM-ENIRPMDRLICGDVGYGKTEVALRGIFKACMDQ 663
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH+ +S+RF YP I V +LSRF++K E+E ++ +K+G +++I+
Sbjct: 664 KQVAFLVPTTILAQQHYKTLSDRFENYP-INVDVLSRFKTKKEQEITIEKVKNGEVDVII 722
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + ++G+LV+DEEQRFGVK KEKI K ++DVLTL+ATPIPRTL ++L+
Sbjct: 723 GTHRLLSKDVEFKDIGMLVIDEEQRFGVKHKEKIKQIKSNIDVLTLTATPIPRTLNMSLS 782
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ PP +R PI T+++ + ++ AI+ E+ R GQVF+V ++ +++ +F
Sbjct: 783 GIRDMSVLEEPPNDRYPIITYVTEAREGIILDAIEREIARNGQVFFVYNSVENIDKMYNF 842
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P IAIAHGQ + LE+ M + + +L+CT I+E+G+DI NANTIIV +
Sbjct: 843 IQKLVPSARIAIAHGQMSAIALEDIMMDYLEKKYDVLLCTTIIETGMDISNANTIIVYNA 902
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+ ++A+AYL Y +L++ A +RL A+ E E G GF++A
Sbjct: 903 DKMGLSQLYQLRGRVGRSSRQAYAYLMYEKDKVLTEIAQKRLKAIREFTEFGSGFRVAMM 962
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G I GE Q G + VG DL+ +ML +S +++ V S ++ +N+N
Sbjct: 963 DLEIRGSGNILGEVQHGHIEEVGYDLYIKMLNDSFNRLKGKTVEEKV--STEVYLNVNAY 1020
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
+P YI +E+ + ++ + +Q + ++ P +E LLK +R +
Sbjct: 1021 IPDNYIEDEIQKIEIYKKIASINSKEDYFDIQ--AEIEDRFSNIPQEVENLLKISSIRSL 1078
Query: 752 AADIGITKIYASGKMV 767
IGI KI + +
Sbjct: 1079 GEKIGIEKISQKNRTI 1094
>gi|333977675|ref|YP_004515620.1| transcription-repair coupling factor [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333821156|gb|AEG13819.1| transcription-repair coupling factor [Desulfotomaculum kuznetsovii
DSM 6115]
Length = 1179
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 257/618 (41%), Positives = 373/618 (60%), Gaps = 28/618 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLY 209
L+ GDYVVH GIG+++GI VQKD Y+ I+YA G KL V L
Sbjct: 505 LKVGDYVVHVNHGIGRYMGIVSLNIGGVQKD------YLLIKYA-GEDKLYVPTDQVGLI 557
Query: 210 RYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---P 266
+ L E + PR LS+L W R K + K A+++M +L+ LY R Q P + P
Sbjct: 558 QKYLGAEAETPR-LSRLGGAE-WSRVKGRVKEAVREMAQELLALYAAR--QALPGHAFSP 613
Query: 267 KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
P EF A FPY+ TPDQ +A +V+ D+ ER PMDRL+CGDVG+GKTEVALRA F
Sbjct: 614 DTPWQQEFEATFPYQETPDQLRAIQEVKADM-ERPRPMDRLLCGDVGYGKTEVALRAAFK 672
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
V GKQ VL PT +LA+QH++ ERF+ +P + + +LSRF++ E+ + L + G
Sbjct: 673 AVMDGKQVAVLVPTTILAQQHYNTFRERFAGFP-VTIEVLSRFRTPKEQRQVLAGLASGQ 731
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
++I++GTH L+ VV+ +LGLLVVDEEQRFGV KEK+ K VDVLTL+ATPIPRTL
Sbjct: 732 VDIVIGTHRLVQDDVVFKDLGLLVVDEEQRFGVAHKEKLKRLKQDVDVLTLTATPIPRTL 791
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
+++L G RD SL+ TPP R P++T++ + AI+ E+ RGGQV++V R+ L+
Sbjct: 792 HMSLVGVRDTSLLETPPENRFPVQTYVLEEDPVLIREAIRREMGRGGQVYFVHNRVMDLD 851
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
+ +LQ P IA+AHGQ +LE+ M F GA +L+CT I+ESGLDI N NT+
Sbjct: 852 QVAAWLQGLVPEARIAVAHGQMKEEELEQIMLDFMDGAYDVLVCTTIIESGLDIPNVNTL 911
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
IV+D FGLAQLYQLRGRVGR+++ A+AY + +L++ A +RLAA+ E E G G+
Sbjct: 912 IVKDANNFGLAQLYQLRGRVGRSNRLAYAYFTFRRDRVLNEMAEKRLAAIREFTEFGSGY 971
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ--I 684
++A +D+ IRG G + G +Q G + VG DL+ +L E++ + P K V+ I
Sbjct: 972 KIAMRDLEIRGAGNLLGAEQHGHIAAVGFDLYCRLLEEAVREARGEA----PEKVVETSI 1027
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
++ + +P Y+ + +++ ++ + + + L ++G P + LL
Sbjct: 1028 ELPVEAYIPDTYVRDADQKVDLYRRLAVVRREE--QVSELEDELVDRFGDPPQPVCTLLT 1085
Query: 745 KLYVRRMAADIGITKIYA 762
+R +A+ +GI I A
Sbjct: 1086 VARLRALASSLGIKSITA 1103
>gi|118444361|ref|YP_877116.1| transcription-repair coupling factor [Clostridium novyi NT]
gi|118134817|gb|ABK61861.1| transcription-repair coupling factor [Clostridium novyi NT]
Length = 1170
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 259/673 (38%), Positives = 412/673 (61%), Gaps = 25/673 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH GIG + GIK +VQ +Y+ + Y G +PV+Q ++ +Y
Sbjct: 501 LKPGDYVVHTNHGIGVYKGIKQLEVQGHKK---DYLELSYNAGDTLYVPVEQLD-LVQKY 556
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E K P+ ++KL + W + K K + AI ++ +L++LY R K + K+
Sbjct: 557 -IGSEGKSPK-VNKLG-GSEWTKAKKKVRKAINEIAEELVKLYAIRSTLKGHKFGKDTVW 613
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FPY+ TPDQ A +++ D+ E MDRL+CGDVG+GKTEVA+RA F V
Sbjct: 614 QKQFEDEFPYDETPDQLTAIQEIKEDM-ESSKAMDRLLCGDVGYGKTEVAIRAAFKSVMD 672
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ +L PT +LA+QH+ + +RF +P +K+ ++SRF++ A+ + L +K G+++++
Sbjct: 673 GKQVALLVPTTILAEQHYTNLVKRFCDFP-VKIDMISRFKTSAQVKAILKEVKAGNVDVL 731
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH +L V + +LGLL+VDEEQRFGV KEKI + K +VDVLTL+ATPIPRTL+++L
Sbjct: 732 IGTHRILQKDVEFKDLGLLIVDEEQRFGVTHKEKIKNLKKNVDVLTLTATPIPRTLHMSL 791
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG RD S+I TPP ER P++T++ F+ + ++ AI E+DRGGQV++V R+ ++E
Sbjct: 792 TGIRDISVIETPPEERYPVQTYVVEFNDQLILDAITREMDRGGQVYFVYNRVGSIKEMAA 851
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+L + P + IAHGQ R+LE+ M F + IL+CT I+E+GLDIQNANT+I+ D
Sbjct: 852 YLAKLVPDAKVGIAHGQMPERELEKVMFDFMKKEYDILVCTTIIETGLDIQNANTMIIYD 911
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+FGL+QLYQLRGRVGR ++ A+AYL Y +L++ A +RL A+++ ELG GF++A
Sbjct: 912 ADKFGLSQLYQLRGRVGRTNRMAYAYLTYKKDKVLTEVAEKRLKAIKDFTELGSGFKIAM 971
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G Q G + +VG DL+ ML +++ K+ + + P ++ +D+ ++
Sbjct: 972 RDLEIRGAGNLIGAAQHGHMASVGYDLYCRMLEDTI-KLVKGEIDKEPIETT-VDLKVDA 1029
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+P YI +E+ + ++ +M E L ++ P S++ L+ Y++
Sbjct: 1030 YIPGNYIKDEVQKIEVYKKIANIDSKE--SMMDIQEELEDRFSDIPPSVDNLINIAYIKT 1087
Query: 751 MAADIGITKIYASGKMVGMKTN----MNKKVFKMMIDSMTSEV-----HRNSLTFEGDQI 801
+A +GI ++ V +K +N K+ K ++D + V SL + +I
Sbjct: 1088 IANSLGIVEVKEKPNEVIIKFQNKEYINPKLIKGIMDKYSKNVMFKLGDEPSLGYNTRKI 1147
Query: 802 KAELLLELPREQL 814
K E L+ RE L
Sbjct: 1148 KKEELIMHLREFL 1160
>gi|134297990|ref|YP_001111486.1| transcription-repair coupling factor [Desulfotomaculum reducens MI-1]
gi|134050690|gb|ABO48661.1| transcription-repair coupling factor [Desulfotomaculum reducens MI-1]
Length = 1169
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 260/624 (41%), Positives = 381/624 (61%), Gaps = 25/624 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVG-IKFDV---QKDSTVPIEYVFIEYADGMAKL--P 200
K++P + L++GDYVVH GIG+++G I D+ QKD Y+ ++YA G KL P
Sbjct: 496 KMEPLADLKAGDYVVHVNHGIGRYLGVITLDIGALQKD------YLQLQYA-GEDKLYVP 548
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
Q ML +Y L E+ P+ LS+L T W + K K + A++ M +L+ LY R
Sbjct: 549 TDQVG-MLQKY-LGAESDHPK-LSRLGGT-EWSKAKAKVREAVKDMADELLALYASRQTV 604
Query: 261 KRPPYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
+ + K+ P AEF A FPYE TPDQ +A +V++D+ E+ PMDRL+CGDVG+GKTEV
Sbjct: 605 RGHAFSKDMPWQAEFEALFPYEETPDQLRAIGEVKQDM-EKVRPMDRLLCGDVGYGKTEV 663
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
ALRA F V KQ VL PT +LA+QH++ ERF+ YP I++ +LSRF++ E+ + L
Sbjct: 664 ALRAAFKAVMDNKQVAVLVPTTILAQQHYNTFRERFANYP-IRIEMLSRFRTAKEQRQVL 722
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ G ++I+VGTH L+ + +V+ +LGLLVVDEEQRFGV KE++ + +VDVLTLSA
Sbjct: 723 AGLATGEVDIVVGTHRLVQNDIVFKDLGLLVVDEEQRFGVSHKERLKQIRKNVDVLTLSA 782
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL+++L G RD SL+ TPP ER P++T++ + AIK EL+RGGQV++V
Sbjct: 783 TPIPRTLHMSLVGVRDTSLLETPPEERFPVQTYVLEEDPVLIREAIKRELNRGGQVYFVH 842
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
R+ L+ +LQ P I +AHGQ +LE+ M +F G +L+CT IVE+GLD
Sbjct: 843 NRVMDLDRLAGWLQNLVPEARIGMAHGQMKEDELEQIMIEFMDGEYDVLVCTTIVETGLD 902
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
I N NT+IV+D FGL+QLYQLRGRVGR ++ A+AY + +L++ + RL+A+ E
Sbjct: 903 ISNVNTLIVKDADHFGLSQLYQLRGRVGRTNRLAYAYFLFRRDKVLTEISERRLSAIREF 962
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
E G G+++A +D+ IRG G I G QQ G + VG DL+ +L E++ +
Sbjct: 963 TEFGSGYKIAMRDLEIRGAGNILGAQQHGHIAEVGFDLYCRLLEEAVQEA--RGEKVEEV 1020
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++I + +P Y+ +E+ AA +D+ + E L +YG P S+
Sbjct: 1021 VETSVEIPVEAYVPDTYVPDGNQKVELYRRL--AAMRDLVEISDLEEELVDRYGDLPESV 1078
Query: 740 EILLKKLYVRRMAADIGITKIYAS 763
LL+ ++ M + + I S
Sbjct: 1079 RCLLQVTKLKIMGRGLKVKSISRS 1102
>gi|392423514|ref|YP_006464508.1| transcription-repair coupling factor Mfd [Desulfosporosinus
acidiphilus SJ4]
gi|391353477|gb|AFM39176.1| transcription-repair coupling factor Mfd [Desulfosporosinus
acidiphilus SJ4]
Length = 1175
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 250/619 (40%), Positives = 378/619 (61%), Gaps = 13/619 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG+F GI + +V + + +Y I YA G +L V L +
Sbjct: 501 LKPGDYVVHVHHGIGQFTGIERLEV---AGIEKDYFGIRYA-GEDRLYVPLDQLHLLQKY 556
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAI 271
L N + L KL T W + K+K + A+++M DL++LY R Q P N
Sbjct: 557 LGNAAETMPKLYKLGGT-EWHKVKSKTRSAVKEMAFDLLKLYAQREATQGYAFAPDNVWQ 615
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF +FPY T DQ + DV+RD+ PMDRL+CGDVG+GKTEVALRA+F V G
Sbjct: 616 VEFEEKFPYVETDDQLQCIADVKRDMM-LPRPMDRLLCGDVGYGKTEVALRAVFKAVMDG 674
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QHF+ + ERF+ YP I + +LSRF+S E++E + +K G +++IV
Sbjct: 675 KQVAFLVPTTILAQQHFNTLRERFTGYP-ITIDVLSRFRSSKEQKEIIQGLKEGRIDVIV 733
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L V + +LGLL++DEEQRFGV KEK+ + K +VDVLTLSATPIPRTL+++L
Sbjct: 734 GTHRILADAVKFKDLGLLIIDEEQRFGVAHKEKLKTIKGNVDVLTLSATPIPRTLHMSLV 793
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T+++ F + V AI+ E+ RGGQVF+V R++ +++ DF
Sbjct: 794 GVRDMSVIETPPEGRYPVQTYVTEFRPDVVRDAIRREIQRGGQVFFVHNRVEDMDKVTDF 853
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L Q P +AHGQ LE M F + +L+ T I+E+GLD+ N NT+I+ +
Sbjct: 854 LSQLVPEARFGVAHGQMRETMLERVMLDFLEQQTDVLVSTTIIETGLDMPNVNTLIIDEA 913
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR++++A+AYL Y + +L++ A +RLAA+ E E G GF++A +
Sbjct: 914 DRMGLSQLYQLRGRVGRSNRKAYAYLLYKPQKVLTEVAEKRLAAIREFTEFGAGFKIAMR 973
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG +L+ +ML E++ ++ V S I++ ++
Sbjct: 974 DLEIRGAGNLIGAQQHGHLAAVGFELYSQMLKEAVLELRGEKVEEAAEPS--IELQVDAF 1031
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP Y++ + + K A + L + + L ++G P +E L++ + ++ +
Sbjct: 1032 LPDAYVSDKQTKASLYQRLAKVANEA--ELEEMVDELVDRFGTPPREVEHLIQIIRIKLL 1089
Query: 752 AADIGITKIYASGKMVGMK 770
A + I +I + + V ++
Sbjct: 1090 AGVLRIEQIQQTKQNVSLR 1108
>gi|314937290|ref|ZP_07844632.1| transcription-repair coupling factor [Staphylococcus hominis subsp.
hominis C80]
gi|313654586|gb|EFS18336.1| transcription-repair coupling factor [Staphylococcus hominis subsp.
hominis C80]
Length = 1169
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 249/629 (39%), Positives = 394/629 (62%), Gaps = 25/629 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDYVVH G+G+++G++ DV +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYVVHVHHGVGRYLGVETLEVGDVHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K P+ L+KL + W++ K K + +++ + +L+ LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPK-LNKLGGS-EWKKTKAKVQQSVEDIADELIALYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A +F FPYE TPDQ K+ +++ D+ E+E PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGEDTAEQHDFEMDFPYELTPDQAKSIEEIKEDM-EKERPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLISRFRTAKEVRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++IIVGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIIVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKTNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F G IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPEANIAVAHGQMTERDLEETMLSFINGEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ FGL+QLYQLRGRVGR+ + +AY + +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADHFGLSQLYQLRGRVGRSSRIGYAYFLHSTNKVLTETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP- 678
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ VP
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNE-KRGITEEVPD 1014
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
V+++++++ LP+EYI + + +E+ + K ++ L + L ++ P
Sbjct: 1015 APDVEMELHLDAYLPAEYIQNEQAKIEIYKKLRKVENEE--QLFDVKDELLDRFNDYPVE 1072
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKMV 767
+E LL+ + ++ A G+T I GK +
Sbjct: 1073 VERLLEMVEIKIHALHAGVTLIKDKGKQI 1101
>gi|421075906|ref|ZP_15536910.1| transcription-repair coupling factor [Pelosinus fermentans JBW45]
gi|392526018|gb|EIW49140.1| transcription-repair coupling factor [Pelosinus fermentans JBW45]
Length = 1089
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 254/683 (37%), Positives = 409/683 (59%), Gaps = 29/683 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLY 209
++ GDYVVH GIGK+VG++ V KD Y+ I YA G KL V L
Sbjct: 427 IKIGDYVVHINHGIGKYVGVETLIVGKVHKD------YLHIRYA-GEDKLYVPTDQVHLL 479
Query: 210 RYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKN 268
+ + +E PR L+K+ + W + K K + A+ M +L+E+Y R + P
Sbjct: 480 QKYIGSEGDAPR-LNKMGGSD-WLKAKGKAEKAVADMAKELLEIYAQRKVASGFAFDPDT 537
Query: 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328
P EF FPYE TPDQ A ++++ D+ E+ PMDRL+CGDVGFGKTEVA+RA + V
Sbjct: 538 PWQKEFEDAFPYEETPDQLSAIIEIKGDM-EKSQPMDRLLCGDVGFGKTEVAIRAAYKAV 596
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 388
GKQ +L PT VLA+QH+ +S RFS + + V ++SRF++ E+ ++ + G ++
Sbjct: 597 MGGKQVAILVPTTVLAQQHYQTISARFSGFGPV-VDVISRFRNAREQRATVEALASGQVD 655
Query: 389 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 448
+++GTH +L S V++ N+GLL+VDEEQRFGVKQKEK+ + +DVLTLSATPIPRTL++
Sbjct: 656 VLIGTHRILQSDVIFKNIGLLIVDEEQRFGVKQKEKLKKWSAGIDVLTLSATPIPRTLHM 715
Query: 449 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 508
+L G RD S+I TPP ER P+++++ +++E + AIK EL RGGQV++V R++ +++
Sbjct: 716 SLVGARDMSIIETPPEERFPVQSYVVEYNEEVMRDAIKRELKRGGQVYFVYNRVQTIDKM 775
Query: 509 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 568
L + P I +AHGQ LE+ M F +G +L+CT+I+E+GLD+ NANTIIV
Sbjct: 776 YRRLAEMLPDAKIRVAHGQMPEEMLEQAMLDFYEGTDDVLLCTSIIENGLDVPNANTIIV 835
Query: 569 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 628
D FGL+QLYQ+RGRVGR+ + A AY Y +L++ A +RL A++E ELG GF++
Sbjct: 836 YDADHFGLSQLYQMRGRVGRSHRMAFAYFTYRQDKVLTEVAEKRLQAIKEFAELGAGFKI 895
Query: 629 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDINI 688
A +D+ IRG G + G QQ G + +VG +++ +L E++ ++ + P + V ++ N+
Sbjct: 896 AMRDLEIRGAGNLLGSQQHGHIVSVGFEMYCRLLDEAVQQLKTGQTLETPVEPV-LEFNV 954
Query: 689 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+ + +YI+ + +E+ AA ++ + + L ++G+ P + LL+ + +
Sbjct: 955 DAYISGDYISDAMHKIEIYQRI--AACRNEKHISDLVDELIDRFGEPPSCVLNLLEVVKI 1012
Query: 749 RRMAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAE 804
+ + IGI + + + K N+ + + ++ + V + EG ++K
Sbjct: 1013 KNFSRAIGIRSVIQQPNYIEVAFIDKPNVKPEQIMALKEAFPARV---MIYPEGIRLKT- 1068
Query: 805 LLLELPREQLLNWIFQCLAELYA 827
+++ ++LLNW+ + L +
Sbjct: 1069 --VQISNDKLLNWLVKVFTTLVS 1089
>gi|121535095|ref|ZP_01666912.1| transcription-repair coupling factor [Thermosinus carboxydivorans
Nor1]
gi|121306345|gb|EAX47270.1| transcription-repair coupling factor [Thermosinus carboxydivorans
Nor1]
Length = 1109
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 250/611 (40%), Positives = 378/611 (61%), Gaps = 15/611 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNL 213
L+ GDYVVH GIGK+ G+ + + V +Y I YA G K+ V L + +
Sbjct: 427 LKVGDYVVHVNHGIGKYAGV--ETLEVGGVHRDYFLIRYA-GEDKIYVPTDQVHLLQKYI 483
Query: 214 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNPA 270
E + PR L ++ T W++ ++ K A+ + +L+ LY R Q P + P P
Sbjct: 484 GAEGEVPR-LHRMGGTE-WQKATSRAKAAVADLAKELIALYAAR--QVTPGFAFEPDTPW 539
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF FPYE TPDQ +A +++RD+ E PMDRL+CGDVGFGKTEVA+RA F V +
Sbjct: 540 QKEFEEAFPYEETPDQLQAISEIKRDM-EAPRPMDRLLCGDVGFGKTEVAIRAAFKAVMS 598
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ VL PT VLA+QH+ S RF+ + + V ++SRF+S E++ L ++ G ++++
Sbjct: 599 GKQVAVLVPTTVLAQQHYQTFSSRFAGFGPV-VDVISRFRSPKEQKATLAKVRAGQVDVL 657
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH LL V + +LGLL+VDEEQRFGV QKEK+ ++ ++DVLTLSATPIPRTL+++L
Sbjct: 658 IGTHRLLNPDVQFKDLGLLIVDEEQRFGVAQKEKLKKWRTNIDVLTLSATPIPRTLHMSL 717
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+I TPP ER P++T++ + +E V AI+ EL RGGQV++V R++ +++
Sbjct: 718 VGARDMSIIETPPEERYPVQTYVVEYHEEVVRDAIRRELRRGGQVYFVYNRVQTIDKMHS 777
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L + P I +AHGQ +LE M F +G IL+CT+I+ESGLD+ NANTIIV D
Sbjct: 778 RLSEILPDARIGVAHGQMSEDRLERVMLDFYEGNYDILVCTSIIESGLDVPNANTIIVYD 837
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+FGLAQLYQ+RGRVGR + A+AY Y +L++ A +RL A++E ELG GF++A
Sbjct: 838 ADKFGLAQLYQMRGRVGRTHRMAYAYFTYQRDKVLTEVAEKRLQAIKEFAELGAGFKIAM 897
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G I G QQ G + +VG +++ +L E++ ++ V+ P + V ++ N++
Sbjct: 898 RDLEIRGAGNILGPQQHGHILSVGFEMYCRLLDEAVQELRTGKVVQPPPEPV-LEFNVDA 956
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
L +YI+ + +E+ AA + + + + L ++G+ P ++ L ++
Sbjct: 957 YLSGDYISDAMHKIEVYQRI--AAIRTEEHISELVDELIDRFGEPPQPVQNLFMVARIKN 1014
Query: 751 MAADIGITKIY 761
A +GI I+
Sbjct: 1015 YARVLGIRSIF 1025
>gi|398309140|ref|ZP_10512614.1| transcription-repair coupling factor [Bacillus mojavensis RO-H-1]
Length = 1177
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 247/610 (40%), Positives = 385/610 (63%), Gaps = 20/610 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQIGDYVVHINHGIGKYLGI--ETLEINGIHKDYLNIHYQ-GSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLG-GSEWKRVKKKVETSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + EF + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQREFESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ +L PT +LA+QH++ ++ERF YP + +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIADGKQVALLVPTTILAQQHYETITERFQDYP-MNIGLLSRFRTRKEANETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P +A AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVAYAHGKMTENELEAVMLSFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + + +++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFET-E 1022
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ ++ +P YI + ++M A D +Q + + ++G P +E L
Sbjct: 1023 IDLELDAYIPETYIQDGKQKIDMYKRFRSVAAIDEKNELQ--DEMIDRFGNYPKEVEYLF 1080
Query: 744 K----KLYVR 749
K+Y R
Sbjct: 1081 TVAEMKVYAR 1090
>gi|389579898|ref|ZP_10169925.1| transcription-repair coupling factor Mfd [Desulfobacter postgatei
2ac9]
gi|389401533|gb|EIM63755.1| transcription-repair coupling factor Mfd [Desulfobacter postgatei
2ac9]
Length = 1160
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 248/619 (40%), Positives = 386/619 (62%), Gaps = 24/619 (3%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRM 207
+ P L++GD+VVH + G+G++ G+ F + S + +++ + Y D +PV + +
Sbjct: 490 IAPEELKNGDFVVHLEHGVGRYEGL-FSLTV-SGITQDFILVVYQDDDKLYVPVDRMEVI 547
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQK-----R 262
+ T L K+ + +W K K + ++KM DL++LY R K R
Sbjct: 548 GKYIGVDGYTP---VLDKIG-SKSWTNSKAKARAEVEKMAADLLDLYARRKVAKGFSFSR 603
Query: 263 PPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
P N +F A FPYE T DQ +A DV D+ E++TPMDRL+CGDVG+GKTEVA+R
Sbjct: 604 PDNYYN----DFEAGFPYEETRDQLRAIDDVHLDM-EKDTPMDRLVCGDVGYGKTEVAIR 658
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F V+ GKQ ++ PT +LA+QH + +RF+ YP I + LSRF+++ E+ + L
Sbjct: 659 AAFKAVNDGKQVALVVPTTILAEQHLNTFRDRFNNYPVI-IECLSRFRTRKEQTDILKRT 717
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
G ++I++GTH LL VV+ +LGLL++DEEQRFGVK KEK+ + +VDVL LSATPI
Sbjct: 718 AGGTVDIVIGTHRLLQKDVVFKSLGLLIIDEEQRFGVKHKEKLKEKRAAVDVLALSATPI 777
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL+++LTG RD S+I+TPP +R PI ++++ + + V A+ ELDR GQVF+V I
Sbjct: 778 PRTLHMSLTGMRDISVITTPPADRRPIISYITKYEEPLVREAVIKELDRKGQVFFVHNNI 837
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
K + + + +Q+ P I +AHG+ +LE+ ME+F + I +L+CT I+ESGLDI +
Sbjct: 838 KTIFKTAENIQKLIPDAKIGVAHGRLSETELEKVMEQFIRQQINVLVCTTIIESGLDIPS 897
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
ANT+I+ ++FGL+Q+YQLRGR+GR D++A+AYLF D+S L+ A +RLAAL E R+L
Sbjct: 898 ANTMIIDKAERFGLSQIYQLRGRIGRGDEQAYAYLFIEDESRLTKDARKRLAALMEHRDL 957
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKS 681
G GFQ+A KD+ IRG GT G Q+G + VG D+F ++L ++ + EH + P +
Sbjct: 958 GSGFQIAMKDLQIRGAGTALGASQSGHIAAVGYDMFLKLLDNAVKDMKGEH--LPEPLEP 1015
Query: 682 VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
+I+ +++ P +YI +E + + + + + + + + L +YG+ P S E
Sbjct: 1016 -EINASMSSGFPDDYIESVEQRLTIYRRLSRLTQ--VSDIAEMKKELVDRYGELPKSAEN 1072
Query: 742 LLKKLYVRRMAADIGITKI 760
+L K+ +R A G+ ++
Sbjct: 1073 MLLKIMLRIFAIKAGVKRL 1091
>gi|435852897|ref|YP_007314216.1| transcription-repair coupling factor Mfd [Halobacteroides halobius
DSM 5150]
gi|433669308|gb|AGB40123.1| transcription-repair coupling factor Mfd [Halobacteroides halobius
DSM 5150]
Length = 1160
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 251/613 (40%), Positives = 388/613 (63%), Gaps = 23/613 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRY 211
L G+YVVH+ GIGK++GIK +VQ +S +Y+ ++YA D +P Q ++ +Y
Sbjct: 496 LNEGNYVVHENHGIGKYLGIKTLEVQGNSE---DYLVVKYAGDDKLYIPTDQVD-LIGKY 551
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ + P+ L KL D+ W + K + K ++++M DL+ELY R + K+
Sbjct: 552 -VGMDDNEPK-LHKL-DSDNWAKAKARVKKSVEEMAEDLLELYAKREMATGYAFSKDTEW 608
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F A FPY+ TPDQ KA +V+ D+ E E PMDRL+CGDVG+GKTEVA+RA+F V
Sbjct: 609 QVDFEAAFPYQETPDQLKAIEEVKADM-ESEQPMDRLLCGDVGYGKTEVAIRAMFKAVMD 667
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH++ + +RFS+YP + V +LSRF++ E+++ ++ ++ G +II
Sbjct: 668 GKQVAFLVPTTILAQQHWNNLIDRFSEYP-VNVSMLSRFRTAKEQQKIIEDLEAGRTDII 726
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH LL + +NNLGL+VVDEEQRFGV QKEK+ K ++D+LTL+ATPIPRTL+++L
Sbjct: 727 IGTHRLLSQDIKFNNLGLVVVDEEQRFGVTQKEKLKGIKENIDILTLTATPIPRTLHMSL 786
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+I T P R PI+T++ + E V A+ EL+R GQ++ V R+K ++E
Sbjct: 787 VGIRDISVIETAPKNRYPIRTYVGEYKDELVKDALVKELNRDGQIYVVHNRVKDIKEVAS 846
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q P +IA+AHGQ ++LE M F +G IL+ T I+E+G+DI N NTII+
Sbjct: 847 QMQSLVPQAEIAVAHGQMNEKRLERLMLDFLEGNFDILVSTTIIETGMDIPNVNTIIINQ 906
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GLAQLYQLRGRVGR+++ A+AYL Y +LS+ A +RL A++E LG GF++A
Sbjct: 907 ADKMGLAQLYQLRGRVGRSNRIAYAYLLYDQGRILSEIAEKRLKAIKEFTSLGSGFKIAM 966
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G I G +Q G + VG L+ ++L ++ K+ + V++++ ++
Sbjct: 967 RDLEIRGAGNILGPEQHGHIEAVGFSLYCKLLETAIKKLQNK---EEAERKVKMELKVDA 1023
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTE---SLRRQYGKEPYSMEILLKKLY 747
LP++YI + +E+ E + I L + TE L+ ++GK P +++ LLK
Sbjct: 1024 YLPADYIADSKQKIEVYKEI-----KTISTLEEQTELVNQLQDRFGKLPPAVKRLLKLTK 1078
Query: 748 VRRMAADIGITKI 760
+R +A + + +I
Sbjct: 1079 LRILARKLLVEEI 1091
>gi|228476216|ref|ZP_04060919.1| transcription-repair coupling factor [Staphylococcus hominis SK119]
gi|228269701|gb|EEK11200.1| transcription-repair coupling factor [Staphylococcus hominis SK119]
Length = 1169
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 251/631 (39%), Positives = 397/631 (62%), Gaps = 29/631 (4%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDYVVH G+G+++G++ DV +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYVVHVHHGVGRYLGVETLEVGDVHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K P+ L+KL + W++ K K + +++ + +L+ LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPK-LNKLGGS-EWKKTKAKVQQSVEDIADELIALYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A +F FPYE TPDQ K+ +++ D+ E+E PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGEDTAEQHDFEMDFPYELTPDQAKSIEEIKEDM-EKERPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLISRFRTAKEVRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKTNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F G IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPEANIAVAHGQMTERDLEETMLSFINGEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY + +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHSTNKVLTETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS--V 677
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E+ V+E I+ V
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEA---VNEKRGITEEV 1012
Query: 678 P-YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEP 736
P V+++++++ LP+EYI + + +E+ + K ++ L + L ++ P
Sbjct: 1013 PDAPDVEMELHLDAYLPAEYIQNEQAKIEIYKKLRKVENEE--QLFDVKDELLDRFNDYP 1070
Query: 737 YSMEILLKKLYVRRMAADIGITKIYASGKMV 767
+E LL+ + ++ A G+T I GK +
Sbjct: 1071 VEVERLLEMVEIKIHALHAGVTLIKDKGKQI 1101
>gi|414154401|ref|ZP_11410720.1| Transcription-repair-coupling factor [Desulfotomaculum hydrothermale
Lam5 = DSM 18033]
gi|411454192|emb|CCO08624.1| Transcription-repair-coupling factor [Desulfotomaculum hydrothermale
Lam5 = DSM 18033]
Length = 1168
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 253/598 (42%), Positives = 369/598 (61%), Gaps = 24/598 (4%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDV---QKDSTVPIEYVFIEYADGMAKL--PVKQASR 206
L+ GDYVVH GIG+++GI D+ QKD Y+ ++YA G KL P Q
Sbjct: 501 DLKPGDYVVHVNHGIGRYLGIITLDIGGLQKD------YLQVQYA-GEDKLYVPTDQVG- 552
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY- 265
ML +Y L E P+ LS+L + W + K + K A++ M +L+ELY R + +
Sbjct: 553 MLQKY-LGAEADHPK-LSRLGGSE-WAKAKARVKEAVRDMARELLELYAARQTVQGYAFS 609
Query: 266 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
P P AEF AQFPYE TPDQ +A +V+RD+ E+ PMDRL+CGDVG+GKTEVALRA F
Sbjct: 610 PDTPWQAEFEAQFPYEETPDQLRAIQEVKRDM-EKPRPMDRLLCGDVGYGKTEVALRAAF 668
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
V KQ VL PT +LA+QH++ ERF+ YP +++ +LSRF++ E+ + L + G
Sbjct: 669 KAVMDNKQVAVLVPTTILAQQHYNTFRERFANYP-VRIEMLSRFRTPKEQRQVLAGLATG 727
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++I++GTH L+ + + +LGLLVVDEEQRFGV KEK+ + +VDVLTL+ATPIPRT
Sbjct: 728 EVDIVIGTHRLVQDDIYFKDLGLLVVDEEQRFGVMHKEKLKQLRQNVDVLTLTATPIPRT 787
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L+++L G RD S++ TPP ER P++T++ + AI+ EL+RGGQV++V R+ L
Sbjct: 788 LHMSLVGVRDTSVLETPPEERFPVQTYVLEEDPVLIREAIRRELNRGGQVYFVHNRVVDL 847
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
+ +LQ P + +AHGQ +LE+ M +F GA +L+CT IVE+GLDI N NT
Sbjct: 848 DRLAGWLQGLVPEARLGVAHGQMKEDELEQIMLEFMDGAYDVLVCTTIVETGLDIANVNT 907
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
+IV+D FGLAQLYQLRGRVGR ++ A+AY + +L++ + RL+A+ E E G G
Sbjct: 908 LIVKDADHFGLAQLYQLRGRVGRTNRLAYAYFLFRRDKVLTEVSERRLSAIREFTEFGSG 967
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
+++A +D+ IRG G I G QQ G + VG +++ +L E++ + H V +V++
Sbjct: 968 YKIAMRDLEIRGAGNILGAQQHGHIAEVGFEMYCRLLEEAIQEARGHKTEQVVDTAVELP 1027
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+ +P Y+ +E+ AA Q++ L + L +YG P S+ LL
Sbjct: 1028 --VEAYIPDTYVPDGNQKVELYRRL--AAMQEVSELADLEDELVDRYGDLPDSVRCLL 1081
>gi|365154885|ref|ZP_09351283.1| transcription-repair coupling factor [Bacillus smithii 7_3_47FAA]
gi|363628996|gb|EHL79689.1| transcription-repair coupling factor [Bacillus smithii 7_3_47FAA]
Length = 1175
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 251/619 (40%), Positives = 389/619 (62%), Gaps = 20/619 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L GDYVVH GIGK++GIK + + V +Y+ I+Y G +L PV Q
Sbjct: 494 RIKSYSELNVGDYVVHVNHGIGKYLGIK--TLEINGVHKDYLHIKY-QGTDQLYVPVDQI 550
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
++ +Y + +E K P+ + KL + W+R K K + ++Q + DL++LY R K
Sbjct: 551 D-LVQKY-IASEGKEPK-IYKLGGS-EWKRVKKKVQSSVQDIADDLIKLYAEREASKGYA 606
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P EF A FPY+ T DQ ++ +++RD+ ERE PMDRL+CGDVG+GKTEVALRA
Sbjct: 607 FSPDGDLQREFEAAFPYQETEDQLRSIQEIKRDM-ERERPMDRLLCGDVGYGKTEVALRA 665
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + GKQ +L PT +LA+QH++ + ERF YP I +G+LSRF+++ + +E + IK
Sbjct: 666 AFKAIMDGKQVAMLVPTTILAQQHYETMKERFRGYP-INIGMLSRFRTRKQIQETIKGIK 724
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I+VGTH LL V Y++LGLL+VDEEQRFGV KE+I K +VDVLTL+ATPIP
Sbjct: 725 NGTIDIVVGTHRLLSKDVQYHDLGLLIVDEEQRFGVTHKERIKQLKTNVDVLTLTATPIP 784
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL R GQVF++ R++
Sbjct: 785 RTLHMSMLGVRDLSIIETPPENRFPVQTYVMEYNGTVVREAIERELARDGQVFFLYNRVE 844
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E + + P + AHGQ +LE+ + F +G +L+ T I+E+G+DI N
Sbjct: 845 DIERKAEEISLLVPDARVTYAHGQMTESELEDVILSFLEGEYDVLVTTTIIETGVDIPNV 904
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL +++E ELG
Sbjct: 905 NTLIVYDADRMGLSQLYQLRGRVGRSNRIAYAYFMYRKDKVLSETAEKRLQSIKEFTELG 964
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS-- 681
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E+ ++E I+V K
Sbjct: 965 SGFKIAMRDLSIRGAGNLLGPQQHGFIDSVGFDLYSQMLKEA---IEERKGITVEEKPPV 1021
Query: 682 VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
+++++I+ +P YI + +EM A + + + + E + ++G+ P +E
Sbjct: 1022 FEVELDIDAYIPDAYIPDGQQKIEMYKRFR--ALETLEEVAELQEEMVDRFGEYPKEVEY 1079
Query: 742 LLKKLYVRRMAADIGITKI 760
L + ++ A D+ + I
Sbjct: 1080 LFRVAEMKIFAKDVHLESI 1098
>gi|333922335|ref|YP_004495915.1| transcription-repair coupling factor [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|333747896|gb|AEF93003.1| transcription-repair coupling factor [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 1169
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 258/621 (41%), Positives = 387/621 (62%), Gaps = 25/621 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVG-IKFDV---QKDSTVPIEYVFIEYADGMAKL--P 200
+++P + L++GDYVVH GIG+++G + ++ QKD Y+ ++YA G KL P
Sbjct: 496 RMEPLADLKAGDYVVHVNHGIGRYLGMVSLNIGGLQKD------YLQLQYA-GEDKLYVP 548
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
Q ML +Y L E P+ LS+L T W + K K K A++ M +L+ELY R
Sbjct: 549 TDQVG-MLQKY-LGAEADHPK-LSRLGGTE-WAKAKAKVKEAVRDMAKELLELYAARQTV 604
Query: 261 KRPPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
K + P P AEF AQFPYE TPDQ +A +V+RD+ E+E PMDRL+CGDVG+GKTEV
Sbjct: 605 KGHAFSPDTPWQAEFEAQFPYEETPDQLRAIAEVKRDM-EKERPMDRLLCGDVGYGKTEV 663
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
ALRA F V KQ VL PT +LA+QH++ ERF+ YP I++ +LSRF++ E+ + L
Sbjct: 664 ALRAAFKAVMDNKQVAVLVPTTILAQQHYNTFRERFANYP-IRIEMLSRFRTPKEQRQVL 722
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ G +++++GTH L+ V++ +LGLLVVDEEQRFGV KE++ + +VDVLTL+A
Sbjct: 723 AGLATGEVDVVIGTHRLVQDDVIFKDLGLLVVDEEQRFGVAHKERLKQMRKNVDVLTLTA 782
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL+++L G RD S++ TPP ER P++T++ + AI+ EL+RGGQV++V
Sbjct: 783 TPIPRTLHMSLVGVRDTSVLETPPEERFPVQTYVLEEDPTLIREAIRRELNRGGQVYFVH 842
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
R+ L+ +LQ P IA+AHGQ +LE+ M +F GA +L+CT IVE+GLD
Sbjct: 843 NRVMDLDRLAGWLQDLVPEARIAVAHGQMKEDELEQIMLEFMDGAYDVLVCTTIVETGLD 902
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
I N NT+IV+D FGL+QLYQLRGRVGR ++ A+AY + +L++ + RL+A+ E
Sbjct: 903 ISNVNTLIVKDADHFGLSQLYQLRGRVGRTNRLAYAYFLFRRDKVLTEVSERRLSAIREF 962
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
E G GF++A +D+ IRG G I G +Q G + VG DL+ +L E++ + V P
Sbjct: 963 TEFGSGFKIAMRDLEIRGAGNILGAEQHGHIAEVGFDLYCRLLEEAVHEARGEKV-EQPV 1021
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
+ +++ + +P +Y+ +E+ A +++ + E L ++G P S+
Sbjct: 1022 DTA-VELPVEAYIPDQYVPDGNQKVELYRRL--AGMRELSEIADMEEELVDRFGDLPESV 1078
Query: 740 EILLKKLYVRRMAADIGITKI 760
+ LLK ++ + + + I I
Sbjct: 1079 QNLLKVTALKILGSQLKIKSI 1099
>gi|288554664|ref|YP_003426599.1| transcription-repair coupling factor [Bacillus pseudofirmus OF4]
gi|288545824|gb|ADC49707.1| transcription-repair coupling factor (TRCF) [Bacillus pseudofirmus
OF4]
Length = 1180
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 237/600 (39%), Positives = 381/600 (63%), Gaps = 14/600 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L+ GD VVH GIGK++G+ + + + + +Y+ + YA D +PV+Q
Sbjct: 495 RIKSYSELKVGDLVVHTNHGIGKYLGV--ETLEINGLHKDYLHLRYAGDDKLYVPVEQID 552
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
+ + +Y + +E K P+ + + W++ K + + +++ + DL++LY R K Y
Sbjct: 553 Q-VQKY-VGSEEKDPKIYALGGND--WKKVKKRVQSSVEDIADDLIKLYAEREASKGYAY 608
Query: 266 PKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
K+ A A+F FPY+ T DQ +A +++ D+ E+E PMDRL+CGDVG+GKTEVA+RA
Sbjct: 609 SKDGAEQADFEGTFPYQETEDQIRAVEEIKEDM-EKERPMDRLLCGDVGYGKTEVAIRAA 667
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F + GKQ +L PT +LA+QH++ + ERFS +P I +G+LSRF+S+ E+ E L +K
Sbjct: 668 FKAIMDGKQVAILVPTTILAQQHYETIKERFSDFP-INIGVLSRFRSRKEQTETLKGLKA 726
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G +++IVGTH LL +V+ +LGLL+VDEEQRFGV KEKI K ++DVLTL+ATPIPR
Sbjct: 727 GSVDLIVGTHRLLSKDIVFKDLGLLIVDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPR 786
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 787 TLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNASLIREAIERELTRGGQVYFLYNRVED 846
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E + + P ++ AHGQ R+LE M F +G +L+ T I+E+G+DI N N
Sbjct: 847 IERMTEQISMLVPDAKVSFAHGQMNERELESIMLDFLEGNSDVLVTTTIIETGVDIPNVN 906
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+I+ D + GL+QLYQ+RGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 907 TLIINDADKMGLSQLYQIRGRVGRSNRVAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGS 966
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + P++ V++
Sbjct: 967 GFKIAMRDLTIRGAGNLLGAQQHGFIESVGFDLYSQMLKEAIEERKGDKPKEPPFQ-VEM 1025
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
DI ++ +P YI + +EM + + I L + + ++G+ P +E LL+
Sbjct: 1026 DIKVDAYIPESYIQDAKQKIEMYKRFKGC--ETIEDLADLKDEMFDRFGEYPKQVEYLLR 1083
>gi|323701604|ref|ZP_08113276.1| transcription-repair coupling factor [Desulfotomaculum nigrificans
DSM 574]
gi|323533377|gb|EGB23244.1| transcription-repair coupling factor [Desulfotomaculum nigrificans
DSM 574]
Length = 1169
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 258/621 (41%), Positives = 387/621 (62%), Gaps = 25/621 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVG-IKFDV---QKDSTVPIEYVFIEYADGMAKL--P 200
+++P + L++GDYVVH GIG+++G + ++ QKD Y+ ++YA G KL P
Sbjct: 496 RMEPLADLKAGDYVVHVNHGIGRYLGMVSLNIGGLQKD------YLQLQYA-GEDKLYVP 548
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
Q ML +Y L E P+ LS+L T W + K K K A++ M +L+ELY R
Sbjct: 549 TDQVG-MLQKY-LGAEADHPK-LSRLGGTE-WAKAKAKVKEAVRDMAKELLELYAARQTV 604
Query: 261 KRPPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
K + P P AEF AQFPYE TPDQ +A +V+RD+ E+E PMDRL+CGDVG+GKTEV
Sbjct: 605 KGHAFSPDTPWQAEFEAQFPYEETPDQLRAIAEVKRDM-EKERPMDRLLCGDVGYGKTEV 663
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
ALRA F V KQ VL PT +LA+QH++ ERF+ YP I++ +LSRF++ E+ + L
Sbjct: 664 ALRAAFKAVMDNKQVAVLVPTTILAQQHYNTFRERFANYP-IRIEMLSRFRTPKEQRQVL 722
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ G +++++GTH L+ V++ +LGLLVVDEEQRFGV KE++ + +VDVLTL+A
Sbjct: 723 AGLATGEVDVVIGTHRLVQDDVIFKDLGLLVVDEEQRFGVAHKERLKQMRKNVDVLTLTA 782
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL+++L G RD S++ TPP ER P++T++ + AI+ EL+RGGQV++V
Sbjct: 783 TPIPRTLHMSLVGVRDTSVLETPPEERFPVQTYVLEEDPTLIREAIRRELNRGGQVYFVH 842
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
R+ L+ +LQ P IA+AHGQ +LE+ M +F GA +L+CT IVE+GLD
Sbjct: 843 NRVMDLDRLAGWLQDLVPEARIAVAHGQMKEDELEQIMLEFMDGAYDVLVCTTIVETGLD 902
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
I N NT+IV+D FGL+QLYQLRGRVGR ++ A+AY + +L++ + RL+A+ E
Sbjct: 903 ISNVNTLIVKDADHFGLSQLYQLRGRVGRTNRLAYAYFLFRRDKVLTEVSERRLSAIREF 962
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
E G GF++A +D+ IRG G I G +Q G + VG DL+ +L E++ + V P
Sbjct: 963 TEFGSGFKIAMRDLEIRGAGNILGAEQHGHIAEVGFDLYCRLLEEAVHEARGEKV-EQPV 1021
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
+ +++ + +P +Y+ +E+ A +++ + E L ++G P S+
Sbjct: 1022 DTA-VELPVEAYIPDQYVPDGNQKVELYRRL--AGMRELSEIADMEEELVDRFGDLPESV 1078
Query: 740 EILLKKLYVRRMAADIGITKI 760
+ LLK ++ + + + I I
Sbjct: 1079 QNLLKVTALKILGSQLKIKSI 1099
>gi|418619039|ref|ZP_13181881.1| transcription-repair coupling factor [Staphylococcus hominis VCU122]
gi|374825745|gb|EHR89668.1| transcription-repair coupling factor [Staphylococcus hominis VCU122]
Length = 1169
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 394/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDYVVH G+G+++G++ DV +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYVVHVHHGVGRYLGVETLEVGDVHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K P+ L+KL + W++ K K + +++ + +L+ LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPK-LNKLGGS-EWKKTKAKVQQSVEDIADELIALYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A +F FPYE TPDQ K+ +++ D+ E+E PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGEDTAEQHDFEMDFPYELTPDQAKSIEEIKEDM-EKERPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLISRFRTAKEVRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKTNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F G IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPEANIAVAHGQMTERDLEETMLSFINGEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY + +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHSANKVLTETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ +
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGITEEAPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
V+++++++ LP+EYI + + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PDVEMELHLDAYLPAEYIQNEQAKIEIYKKLRKVENEE--QLFDVKDELLDRFNDYPVEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL+ + ++ A G+T I GK +
Sbjct: 1074 ERLLEMVEIKIHALHAGVTLIKDKGKQI 1101
>gi|373495519|ref|ZP_09586102.1| transcription-repair coupling factor [Eubacterium infirmum F0142]
gi|371964656|gb|EHO82167.1| transcription-repair coupling factor [Eubacterium infirmum F0142]
Length = 1144
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 250/628 (39%), Positives = 396/628 (63%), Gaps = 19/628 (3%)
Query: 146 SYKVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYA-DGMAKLPVK 202
S K+ +S ++GDYVVH+ GIGKF+GI+ +VQ + +Y+ I+Y+ + +PV+
Sbjct: 460 SQKMQSFSDFKTGDYVVHENHGIGKFLGIQALEVQGEQK---DYLKIKYSGTDLLYVPVE 516
Query: 203 QASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
Q ++ +Y + +E P+ +SKLS W+ KTK ++AI +M +L++LY R K
Sbjct: 517 QMD-IVQKY-IGSEGISPK-VSKLS-GDEWKVAKTKARLAIAEMTDELIKLYADRKASKG 572
Query: 263 PPYPKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
+ K+ EF A F Y+ T DQ + +++RD+ E E PMDRL+CGDVG+GKTEVA
Sbjct: 573 FAFSKDTVWQKEFEAYFNYQETDDQLTSIDEIKRDM-ESELPMDRLLCGDVGYGKTEVAA 631
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RAIF +S GKQA +L PT +LA QH++ + ERFS +P + +LSRF+S ++++ +D
Sbjct: 632 RAIFKCISEGKQAAMLVPTTILANQHYNSLKERFSNFP-FTIDMLSRFRSDEQQDKIVDG 690
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+K G ++ ++GTH LL + Y +LGLLV+DEEQRFGV KEK+ K ++DVLTLSATP
Sbjct: 691 LKKGRIDFVIGTHRLLSDDIKYKDLGLLVIDEEQRFGVAHKEKLKKLKSNIDVLTLSATP 750
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL ++LTG +D SLI+ PP +R P++T++ + I ELDR GQV+ V R
Sbjct: 751 IPRTLNMSLTGIKDMSLITEPPGDRYPVQTYVLEQDDIVMREIITRELDRDGQVYIVFNR 810
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
+KG+ + +Q +I + HGQ + LE M++F G +L+ T I+ESG+DI
Sbjct: 811 VKGINRLAEKIQSLVSDAEIVVGHGQMNEKSLESVMQRFISGDADVLVATTIIESGIDIP 870
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANTIIV D + GLAQLYQLRGRVGR DK A+AYL Y +L++ A +RL A++E E
Sbjct: 871 NANTIIVIDADKCGLAQLYQLRGRVGRTDKIAYAYLMYQKNKVLTEVAEKRLKAIKEFTE 930
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS 681
G GF++A +D+ IRG G + G +Q+G + N+G +L+ +++ +++ + V P +
Sbjct: 931 FGSGFKVAMRDLEIRGAGNVLGAEQSGHMMNIGYELYCKLVDDAVRRAKGENVPE-PAEE 989
Query: 682 VQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
+ I++++ +P+ YI++ ++M + A + +D + + L ++G P
Sbjct: 990 INIELDVAANIPNWYIDNETLKLQMYKKIATVSTREDSE---EIIDELLDRFGDLPRETL 1046
Query: 741 ILLKKLYVRRMAADIGITKIYA-SGKMV 767
L+ +R ++ ++G++ I+ +GK+V
Sbjct: 1047 NLIAVSMIRALSGNVGVSNIHEQAGKVV 1074
>gi|418030599|ref|ZP_12669084.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|351471658|gb|EHA31771.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. SC-8]
Length = 1177
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 247/611 (40%), Positives = 383/611 (62%), Gaps = 20/611 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQIGDYVVHINHGIGKYLGI--ETLEINGIHKDYLNIHY-QGSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLG-GSEWKRVKKKVETSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + EF + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQREFESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIGDGKQVALLVPTTILAQQHYETIKERFQDYP-INIGLLSRFRTRKEANETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P +A AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + + +++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFET-E 1022
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ ++ +P YI + ++M A I + + + ++G P +E L
Sbjct: 1023 IDVELDAYIPETYIQDGKQKIDMYKRFRSVA--TIEEKNELQDEMIDRFGNYPKEVEYLF 1080
Query: 744 K----KLYVRR 750
K+Y R+
Sbjct: 1081 TVAEMKVYARQ 1091
>gi|406672751|ref|ZP_11079976.1| transcription-repair coupling factor [Bergeyella zoohelcum CCUG
30536]
gi|405587295|gb|EKB61023.1| transcription-repair coupling factor [Bergeyella zoohelcum CCUG
30536]
Length = 1129
Score = 447 bits (1150), Expect = e-122, Method: Compositional matrix adjust.
Identities = 247/626 (39%), Positives = 377/626 (60%), Gaps = 25/626 (3%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLY 209
D SL+ GDY+ H GIGKF+G+ V D V E + Y +G A +
Sbjct: 439 DLMSLKVGDYITHIDHGIGKFMGL-VKVNNDGKVQ-ECFKLTYKNGDLLYVSIHALHKIS 496
Query: 210 RYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKN 268
+YN P+ + TLSKL + AW+ K K K ++++ DL++LY R K + P
Sbjct: 497 KYNGPD--GKEITLSKLG-SPAWKNLKQKTKAKVKQIAFDLIKLYAKRKTAKGFAFTPDT 553
Query: 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328
E A F YE TPDQ+KA DV++D+ E ET MDRL+CGDVGFGKTEVA+RA F V
Sbjct: 554 YLQNELEASFLYEDTPDQEKATADVKKDM-EAETIMDRLVCGDVGFGKTEVAIRAAFKAV 612
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 388
+ GKQ VL PT +LA QH+ ER +P + + L+RF++ +K+E L+ ++ G+L+
Sbjct: 613 TDGKQVAVLVPTTILAFQHYRSFQERLKDFP-VNISYLNRFRTAKQKKETLERLESGNLD 671
Query: 389 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 448
I++GTH L+ +V + +LGLL++DEE +FGV K+K+ + K ++D LTL+ATPIPRTL
Sbjct: 672 IVIGTHQLVSDKVKFKDLGLLIIDEEHKFGVSVKDKLKTLKSNIDTLTLTATPIPRTLQF 731
Query: 449 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 508
+L RD S+I TPPP R P++T L F++E + AI YE+ R GQV+++ RI+ L+E
Sbjct: 732 SLMAARDLSVIKTPPPNRQPVETQLIGFNEEVIRDAISYEIQRDGQVYFINNRIENLKEI 791
Query: 509 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 568
+Q+ P + HGQ ++LEE + F +G +L+ T IVESG+D+ NANTI +
Sbjct: 792 AGLIQRLVPDARVITGHGQMDGKELEERILDFMEGKYDVLVSTTIVESGVDVPNANTIFI 851
Query: 569 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 628
D Q+FG+A L+Q+RGRVGR++++A YL P +++ A +RL A+E+ +LG GFQ+
Sbjct: 852 NDAQKFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSGFQI 911
Query: 629 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY--------- 679
A KD+ IRG G + G +Q+G + +G + + +++ E+L ++ +
Sbjct: 912 AMKDLEIRGAGDLLGGEQSGFINEMGFEAYQKIMQEALKELQHEEDFDTLFEDKEDRKKL 971
Query: 680 ----KSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGK 734
K V ID ++ LP +YI+ +E + + + AE +QD L +F L ++G
Sbjct: 972 FKSTKEVNIDTDLELMLPDDYISSIEERLSLYQKLAEIQNKQD---LQRFGNELEDRFGA 1028
Query: 735 EPYSMEILLKKLYVRRMAADIGITKI 760
P + LLK + ++ +AA+IG KI
Sbjct: 1029 MPEEVINLLKSVELKWLAAEIGFEKI 1054
>gi|381180829|ref|ZP_09889666.1| transcription-repair coupling factor [Treponema saccharophilum DSM
2985]
gi|380767185|gb|EIC01187.1| transcription-repair coupling factor [Treponema saccharophilum DSM
2985]
Length = 1188
Score = 447 bits (1150), Expect = e-122, Method: Compositional matrix adjust.
Identities = 251/631 (39%), Positives = 387/631 (61%), Gaps = 27/631 (4%)
Query: 146 SYKVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQ 203
S +D + L GDYVVH GIG+F GI+ +S +++ IEYA + +P++Q
Sbjct: 516 SEAIDTFVELEPGDYVVHVNYGIGRFKGIQRLASSESER--DFIKIEYAGEEFLYIPLEQ 573
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTT---AWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
+ ++ RY + N PR DT +WE RK K K A+++M L+ LY R
Sbjct: 574 LN-LVQRY-IGNGGDSPRL-----DTIGGKSWENRKGKVKKAVEEMAEKLVTLYGKRKVS 626
Query: 261 KRPPYPKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
+ + + P + AEF A FPYE TPDQ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 627 RGFAFARWPDLEAEFDAAFPYEDTPDQCSVTREIKDDM-ERPVPMDRLLCGDVGYGKTEV 685
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V + KQ LAPT +LA+QHF+ ERF+ +P + + LSRF + E++E L
Sbjct: 686 AMRAAFKAVLSKKQVAFLAPTTILAEQHFETCVERFANFP-VVIKQLSRFVAPKERKETL 744
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ G ++IIVGTH LL VV+ +LGL+++DEEQRFGVK KE++ + + ++D L++SA
Sbjct: 745 AALAAGQVDIIVGTHRLLQKDVVFRDLGLMIIDEEQRFGVKDKERLKTMRTNIDCLSMSA 804
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL+++L RD SL++TPP R PI+T + A+ EKV AI+ E++RGGQVF++
Sbjct: 805 TPIPRTLHMSLLKIRDMSLLTTPPQTRKPIETFVDAYDDEKVARAIRNEVERGGQVFFLH 864
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
R++ L+E +++ P V + AHGQ + +L++ +F G +L+ T I+E+G+D
Sbjct: 865 NRVETLQETCRTIERLVPEVLVDFAHGQMSAEELDDIFRRFKMGGFHVLVATTIIENGID 924
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
I N NTII+ +G++QLYQLRGRVGR+D++A AYL YP +LS+ A++RL A+ +
Sbjct: 925 IPNVNTIIIDRADMYGISQLYQLRGRVGRSDRKAFAYLLYPGNKVLSEVAMKRLQAISDF 984
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A KDM IRG G + G Q+GDV +VG D++ +L ++++++ + Y
Sbjct: 985 TELGSGFKIAMKDMEIRGAGNLLGRDQSGDVYSVGFDMYVRLLTDAINRLTKEG-----Y 1039
Query: 680 K---SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEP 736
K V I++ + +P Y++ ++ ME+ + AA Q L + ++G P
Sbjct: 1040 KEERDVLIELEYSGFIPDTYVHSVQTKMEIYKKV--AAVQTKEELAGLCLEIEDRFGPIP 1097
Query: 737 YSMEILLKKLYVRRMAADIGITKIYASGKMV 767
+ L+ VR +A + + + G V
Sbjct: 1098 DEVYSLMSLAEVRIIARRLSVDSLKEKGGTV 1128
>gi|365852727|ref|ZP_09393084.1| transcription-repair coupling factor [Lactobacillus parafarraginis
F0439]
gi|363714303|gb|EHL97836.1| transcription-repair coupling factor [Lactobacillus parafarraginis
F0439]
Length = 1177
Score = 447 bits (1150), Expect = e-122, Method: Compositional matrix adjust.
Identities = 257/627 (40%), Positives = 389/627 (62%), Gaps = 32/627 (5%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIE-----YVFIEYADGMAKL--PVKQASR 206
L+ GDYVVH GIG++ G+K T+ ++ Y+ I Y D AKL PV Q +
Sbjct: 496 LKPGDYVVHVNHGIGRYEGMK-------TMEVDGKHQDYLTISYRDS-AKLFIPVTQLN- 546
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVA--IQKMVVDLMELYLHRLKQKRPP 264
++ +Y + +E K+PR ++KL E +KTK KVA I+ + DL++LY R +K
Sbjct: 547 LIQKY-VSSEDKKPR-INKLG---GGEWQKTKRKVASKIEDIADDLIDLYAKRDAEKGYA 601
Query: 265 YPKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
YPK+ ++ AEF A+FPY TPDQ ++ +++RD+ E PMDRL+ GDVG+GKTEVALRA
Sbjct: 602 YPKDDSLQAEFEARFPYTETPDQLRSADEIKRDM-EHPKPMDRLLVGDVGYGKTEVALRA 660
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH+D + +RF+ YP I+V +LSRFQ+ A+ E L +K
Sbjct: 661 AFKAVEVGKQVAFLVPTTILAQQHYDTMMDRFADYP-IEVRVLSRFQTTAQVRETLAGLK 719
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I+VGTH LL V +NNLGLL++DEEQRFGVK KE+I + VDVLTL+ATPIP
Sbjct: 720 NGTVDIVVGTHRLLSKDVQFNNLGLLIIDEEQRFGVKHKERIKEMRTDVDVLTLTATPIP 779
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL +++ G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++
Sbjct: 780 RTLNMSMMGVRDLSVIETPPSNRYPIQTYVLEQNAGTIREAITREMARGGQVFYLHNRVE 839
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E+ ++ + + P +A HGQ QLE+ + F G +L+ T I+E+G+DI N
Sbjct: 840 DIEKTVEQISELVPEARVAYIHGQMTENQLEDILYDFINGEYDVLVTTTIIETGVDIPNV 899
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+ V++ GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+ + ELG
Sbjct: 900 NTLFVENADHMGLSQLYQLRGRIGRSSRVAYAYFMYQPNKVLTEIGEKRLEAIRDFTELG 959
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS-V 682
GF++A +D+ IRG G + G+QQ G V +VG DL+ +ML ++++K V +K+
Sbjct: 960 SGFKIAMRDLSIRGAGNLLGKQQHGFVDSVGYDLYTQMLGDAVAKKRGR---KVAFKTDT 1016
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
I++++ LPS YI + +E+ + +D L + + L ++G + L
Sbjct: 1017 TIELDVEAYLPSSYIQDNQQKIEIYKRIRQIENED--QLHEVDDDLIDRFGDYGQPVANL 1074
Query: 743 LKKLYVRRMAADIGITKIYASGKMVGM 769
LK ++ + + I KI+ G V +
Sbjct: 1075 LKIAEMKMYSDESMIDKIHQDGPRVTL 1101
>gi|430757320|ref|YP_007211204.1| Mfd (Mutation frequency decline) protein [Bacillus subtilis subsp.
subtilis str. BSP1]
gi|430021840|gb|AGA22446.1| Mfd (Mutation frequency decline) protein [Bacillus subtilis subsp.
subtilis str. BSP1]
Length = 1177
Score = 447 bits (1150), Expect = e-122, Method: Compositional matrix adjust.
Identities = 247/611 (40%), Positives = 383/611 (62%), Gaps = 20/611 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQIGDYVVHINHGIGKYLGI--ETLEINGIHKDYLNIHY-QGSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLG-GSEWKRVKKKVETSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + EF + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQREFESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIGDGKQVALLVPTTILAQQHYETIKERFQDYP-INIGLLSRFRTRKEANETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P +A AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + + +++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFET-E 1022
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ ++ +P YI + ++M A I + + + ++G P +E L
Sbjct: 1023 IDVELDAYIPETYIQDGKQKIDMYKRFRSVA--TIEEKNELQDEMIDRFGNYPKEVEYLF 1080
Query: 744 K----KLYVRR 750
K+Y R+
Sbjct: 1081 TVAEMKVYARQ 1091
>gi|16077123|ref|NP_387936.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. 168]
gi|221307865|ref|ZP_03589712.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312187|ref|ZP_03593992.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317120|ref|ZP_03598414.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321383|ref|ZP_03602677.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402774298|ref|YP_006628242.1| transcription-repair coupling factor [Bacillus subtilis QB928]
gi|452912981|ref|ZP_21961609.1| transcription-repair coupling factor [Bacillus subtilis MB73/2]
gi|585481|sp|P37474.1|MFD_BACSU RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|467444|dbj|BAA05290.1| transcription-repair coupling factor [Bacillus subtilis]
gi|2632322|emb|CAB11831.1| transcription-repair coupling factor [Bacillus subtilis subsp.
subtilis str. 168]
gi|402479484|gb|AFQ55993.1| Transcription-repair coupling factor [Bacillus subtilis QB928]
gi|407955746|dbj|BAM48986.1| transcription-repair coupling factor [Bacillus subtilis BEST7613]
gi|407963017|dbj|BAM56256.1| transcription-repair coupling factor [Bacillus subtilis BEST7003]
gi|452118009|gb|EME08403.1| transcription-repair coupling factor [Bacillus subtilis MB73/2]
Length = 1177
Score = 447 bits (1150), Expect = e-122, Method: Compositional matrix adjust.
Identities = 247/611 (40%), Positives = 383/611 (62%), Gaps = 20/611 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQIGDYVVHINHGIGKYLGI--ETLEINGIHKDYLNIHY-QGSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLG-GSEWKRVKKKVETSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + EF + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQREFESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIGDGKQVALLVPTTILAQQHYETIKERFQDYP-INIGLLSRFRTRKEANETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P +A AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + + +++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFET-E 1022
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ ++ +P YI + ++M A I + + + ++G P +E L
Sbjct: 1023 IDVELDAYIPETYIQDGKQKIDMYKRFRSVA--TIEEKNELQDEMIDRFGNYPKEVEYLF 1080
Query: 744 K----KLYVRR 750
K+Y R+
Sbjct: 1081 TVAEMKVYARQ 1091
>gi|354585795|ref|ZP_09004626.1| transcription-repair coupling factor [Paenibacillus lactis 154]
gi|353184120|gb|EHB49648.1| transcription-repair coupling factor [Paenibacillus lactis 154]
Length = 1175
Score = 447 bits (1150), Expect = e-122, Method: Compositional matrix adjust.
Identities = 250/622 (40%), Positives = 379/622 (60%), Gaps = 20/622 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH+ GIGK++GI + + + +Y+ I YA G +P++Q ++ +Y
Sbjct: 489 LKVGDYVVHQNHGIGKYMGIG--TLEINGIHKDYMHILYAGGDKLSVPIEQID-LIQKY- 544
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNP 269
+ +E K P+ + KL W R K K + ++Q + DL++LY R Q P Y P
Sbjct: 545 VGSEDKEPK-IYKLG-GNEWTRVKNKVRSSVQDIADDLIKLYAER--QSAPGYGFDKDTP 600
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF FPY+ TPDQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 601 EQQEFEDMFPYDETPDQLRAIAEIKKDM-EQNRPMDRLLCGDVGYGKTEVAVRAAFKAAI 659
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQ VL PT +LA+QH++ ERF+ YP I + +LSRF+S+ E+ E + +K G ++I
Sbjct: 660 EGKQVAVLVPTTILAQQHYETFRERFANYP-INIQVLSRFRSRKEQNETIKKVKQGAVDI 718
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH LL +V+ +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL+++
Sbjct: 719 LIGTHRLLSQDIVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMS 778
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
+ G RD S+I TPP R P++T++ S+ V AI+ EL RGGQV+Y+ R++G+ E
Sbjct: 779 MLGVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIERELARGGQVYYLYNRVQGIHEMA 838
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+ P + + HGQ +LE+T+ F G +L+ T+I+E+G+DI N NT+IV
Sbjct: 839 AQISMLVPEARVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVH 898
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E ELG GF++A
Sbjct: 899 DADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIA 958
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK--SVQID 685
+D+ IRG G + G +Q G + +VG DL+ +ML E + KV + P K + ID
Sbjct: 959 MRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIQKRKVSMLGETAAPTKDWNTSID 1018
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ I+ LPS+YI +E+ + D + + L ++G+ P ++ LL
Sbjct: 1019 LGIDAYLPSDYIYDSIQKIEIYKKVASVTTIDESA--ELEDELLDRFGELPQAVNNLLAV 1076
Query: 746 LYVRRMAADIGITKIYASGKMV 767
++ GI I G V
Sbjct: 1077 SRLKVYGRTYGIDSITQRGDDV 1098
>gi|319891456|ref|YP_004148331.1| transcription-repair coupling factor [Staphylococcus pseudintermedius
HKU10-03]
gi|386320203|ref|YP_006016366.1| transcription-repair coupling factor [Staphylococcus pseudintermedius
ED99]
gi|317161152|gb|ADV04695.1| Transcription-repair coupling factor [Staphylococcus pseudintermedius
HKU10-03]
gi|323465374|gb|ADX77527.1| transcription-repair coupling factor [Staphylococcus pseudintermedius
ED99]
Length = 1170
Score = 447 bits (1150), Expect = e-122, Method: Compositional matrix adjust.
Identities = 252/632 (39%), Positives = 390/632 (61%), Gaps = 32/632 (5%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDYVVH G+G+++G++ DV +D Y+ I+Y G +L P
Sbjct: 491 KIKSYQELNVGDYVVHVHHGVGRYLGVETLAVGDVHRD------YIKIQYQ-GTDQLFVP 543
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K P+ L KL + W++ K K + +++ + +L+ LY R +
Sbjct: 544 VDQMEQ-VQKY-VGSEDKSPK-LYKLG-GSEWKKTKAKVQRSVEDIADELIALYKER--E 597
Query: 261 KRPPYPKNPAIAE---FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKT 317
+ Y P AE F FPY+ T DQ K+ ++++ D+ E + PMDRL+CGDVG+GKT
Sbjct: 598 QSVGYQFGPDTAEQYAFEMDFPYDLTDDQAKSIIEIKNDM-ESQRPMDRLLCGDVGYGKT 656
Query: 318 EVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEE 377
EVA+RA F V +GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 EVAVRAAFKAVMSGKQVAFLVPTTILAQQHYETLIERMRDFP-VEIHLMSRFRTPKEVRE 715
Query: 378 HLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTL 437
+ +K G ++I+VGTH LLG V Y +LGLL+VDEEQRFGV+ KEKI K +VDVLTL
Sbjct: 716 TKEGLKSGFVDIVVGTHKLLGKTVEYKDLGLLIVDEEQRFGVRHKEKIKQLKANVDVLTL 775
Query: 438 SATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFY 497
+ATPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY
Sbjct: 776 TATPIPRTLHMSMLGVRDLSIIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFY 835
Query: 498 VLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 557
+ R+ + E + LQ P I +AHGQ R LEETM F G IL+ T I+E+G
Sbjct: 836 LYNRVSSIYEKREQLQMLMPDASIGVAHGQLPERDLEETMLDFINGEYDILVTTTIIETG 895
Query: 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALE 617
+D+ NANT+I++D +FGL+QLYQLRGRVGR+ + +AY + +L++ A ERL A++
Sbjct: 896 VDVPNANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHATNRVLNEVAEERLQAIK 955
Query: 618 ECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVI-- 675
E ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E+ V+E I
Sbjct: 956 EFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEA---VNEKRGIKE 1012
Query: 676 SVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKE 735
P +++D+ ++ LP+EYI + + +E+ + A + + LM + L ++
Sbjct: 1013 ETPVPELELDLKLDAYLPAEYIRNEQAKIEIYKKLR--ATESMEQLMDIKDELLDRFNAY 1070
Query: 736 PYSMEILLKKLYVRRMAADIGITKIYASGKMV 767
P +E LL + ++ +G+ + +GK +
Sbjct: 1071 PTEVEQLLDSVEIKVHLLHVGVQSVKDTGKTI 1102
>gi|321313725|ref|YP_004206012.1| transcription-repair coupling factor [Bacillus subtilis BSn5]
gi|320019999|gb|ADV94985.1| transcription-repair coupling factor [Bacillus subtilis BSn5]
Length = 1177
Score = 447 bits (1150), Expect = e-122, Method: Compositional matrix adjust.
Identities = 247/611 (40%), Positives = 383/611 (62%), Gaps = 20/611 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQIGDYVVHINHGIGKYLGI--ETLEINGIHKDYLNIHY-QGSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLG-GSEWKRVKKKVETSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + EF + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQREFESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIGDGKQVALLVPTTILAQQHYETIKERFQDYP-INIGLLSRFRTRKEANETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P +A AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + + +++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFET-E 1022
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ ++ +P YI + ++M A I + + + ++G P +E L
Sbjct: 1023 IDVELDAYIPETYIQDGKQKIDMYKRFRSVA--TIEEKNELQDEMIDRFGNYPKEVEYLF 1080
Query: 744 K----KLYVRR 750
K+Y R+
Sbjct: 1081 TVAEMKVYARQ 1091
>gi|392959846|ref|ZP_10325323.1| transcription-repair coupling factor [Pelosinus fermentans DSM 17108]
gi|421053486|ref|ZP_15516462.1| transcription-repair coupling factor [Pelosinus fermentans B4]
gi|421059172|ref|ZP_15521794.1| transcription-repair coupling factor [Pelosinus fermentans B3]
gi|421063972|ref|ZP_15525901.1| transcription-repair coupling factor [Pelosinus fermentans A12]
gi|421071155|ref|ZP_15532278.1| transcription-repair coupling factor [Pelosinus fermentans A11]
gi|392441911|gb|EIW19524.1| transcription-repair coupling factor [Pelosinus fermentans B4]
gi|392447502|gb|EIW24743.1| transcription-repair coupling factor [Pelosinus fermentans A11]
gi|392455815|gb|EIW32586.1| transcription-repair coupling factor [Pelosinus fermentans DSM 17108]
gi|392459431|gb|EIW35839.1| transcription-repair coupling factor [Pelosinus fermentans B3]
gi|392461988|gb|EIW38119.1| transcription-repair coupling factor [Pelosinus fermentans A12]
Length = 1089
Score = 447 bits (1150), Expect = e-122, Method: Compositional matrix adjust.
Identities = 253/681 (37%), Positives = 409/681 (60%), Gaps = 29/681 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLY 209
++ GDYVVH GIGK+VG++ +V KD Y+ I YA G KL V L
Sbjct: 427 IKIGDYVVHINHGIGKYVGVETLIVGNVHKD------YLHIRYA-GEDKLYVPTDQVHLL 479
Query: 210 RYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKN 268
+ + +E PR L+K+ + W + K K + A+ M +L+E+Y R + P
Sbjct: 480 QKYIGSEGDAPR-LNKMGGSD-WLKAKGKAEKAVADMAKELLEIYAQRKVASGFAFDPDT 537
Query: 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328
P EF FPYE TPDQ A ++++ D+ E+ PMDRL+CGDVGFGKTEVA+RA + V
Sbjct: 538 PWQKEFEDAFPYEETPDQLSAIIEIKSDM-EKSQPMDRLLCGDVGFGKTEVAIRAAYKAV 596
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 388
GKQ +L PT VLA+QH+ +S RF+ + + V ++SRF++ E+ ++ + G ++
Sbjct: 597 MGGKQVAILVPTTVLAQQHYQTISARFAGFGPV-VDVISRFRNAREQRGTIEALVSGQVD 655
Query: 389 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 448
+++GTH +L S V++ N+GLL+VDEEQRFGVKQKEK+ + +DVLTLSATPIPRTL++
Sbjct: 656 VLIGTHRILQSDVIFKNIGLLIVDEEQRFGVKQKEKLKKWSAGIDVLTLSATPIPRTLHM 715
Query: 449 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 508
+L G RD S+I TPP ER P+++++ +++E + AIK EL RGGQV++V R++ +++
Sbjct: 716 SLVGARDMSIIETPPEERFPVQSYVVEYNEEVMRDAIKRELKRGGQVYFVYNRVQTIDKM 775
Query: 509 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 568
L + P I +AHGQ LE+ M F +G +L+CT+I+E+GLD+ NANTIIV
Sbjct: 776 YRRLAEMLPDAKIRVAHGQMPEEMLEQAMLDFYEGTDDVLLCTSIIENGLDVPNANTIIV 835
Query: 569 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 628
D FGL+QLYQ+RGRVGR+ + A AY Y +L++ A +RL A++E ELG GF++
Sbjct: 836 YDADHFGLSQLYQMRGRVGRSHRMAFAYFTYRQDKVLTEVAEKRLQAIKEFAELGAGFKI 895
Query: 629 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDINI 688
A +D+ IRG G + G QQ G + +VG +++ +L E++ ++ + P + V ++ N+
Sbjct: 896 AMRDLEIRGAGNLLGSQQHGHIVSVGFEMYCRLLDEAVQQLKTGRTLEAPVEPV-LEFNV 954
Query: 689 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+ + +YI+ + +E+ AA ++ + + L ++G+ P + LL+ + +
Sbjct: 955 DAYISGDYISDAMHKIEIYQRI--AACRNEKHISDLVDELIDRFGEPPGCVLNLLEVVKI 1012
Query: 749 RRMAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAE 804
+ + IGI + + + K N+ + + ++ + V + EG ++K
Sbjct: 1013 KNFSRAIGIRSVIQQPNYIEVAFIDKPNVKPEQIMALKEAFPARV---MIYPEGIRLKT- 1068
Query: 805 LLLELPREQLLNWIFQCLAEL 825
+++ ++LLNW+ + L
Sbjct: 1069 --VQISNDKLLNWLVKVFTTL 1087
>gi|300114141|ref|YP_003760716.1| transcription-repair coupling factor [Nitrosococcus watsonii C-113]
gi|299540078|gb|ADJ28395.1| transcription-repair coupling factor [Nitrosococcus watsonii C-113]
Length = 1158
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 249/639 (38%), Positives = 385/639 (60%), Gaps = 17/639 (2%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQAS-RM 207
D L G VVH++ G+G+++G++ +V K T E++ +EYA+G KL V +S +
Sbjct: 483 DLVELSMGAPVVHEEHGVGRYLGLQTLEVGKVRT---EFMALEYAEG-DKLYVPVSSLHL 538
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK 267
+ RY T L KL ++ WER K K + ++ + +L+ +Y R +K+PP P
Sbjct: 539 ISRYT--GATPEAAPLHKLG-SSHWERAKHKARERVRDVAAELLAIYAQRAARKKPPLPT 595
Query: 268 -NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
+ A FA FP+E TPDQ A V DLT + PMDRL+CGDVGFGKTEVA+RA F
Sbjct: 596 PDSHYAAFARAFPFEETPDQADAIQAVIADLTS-DQPMDRLVCGDVGFGKTEVAMRAAFI 654
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
V AGKQ VL PT +LA+QH+ +RF+ +P +V ++SRF S+ E+E ++ I G
Sbjct: 655 VSQAGKQVAVLVPTTLLAQQHYQSFKDRFADWP-ARVEVISRFSSRKEQEAVINRIADGR 713
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
+I++GTH LL + + NLGL+++DEE RFGV+QKE++ + + VD+LTL+ATPIPRTL
Sbjct: 714 ADIVIGTHKLLQENIHFKNLGLVIIDEEHRFGVRQKERMKALRAEVDILTLTATPIPRTL 773
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
+++L+ RD S+I+TPP RL IKT + ++ + A+ E+ RGGQV+++ ++ +
Sbjct: 774 HMSLSNLRDLSIIATPPARRLAIKTFVRQWNDNLLREALLREIKRGGQVYFLHNEVESIN 833
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
+ +Q FP + IAHGQ R+LE+TM F IL+CT I+E+G+DI +ANTI
Sbjct: 834 KMAQRIQALFPEAKVGIAHGQMRERELEQTMLNFYHRRFNILVCTTIIETGIDIPSANTI 893
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
I+ + GLAQLYQLRGRVGR+ A+AYL P +S+++ A++RL A+E ELG GF
Sbjct: 894 IIHRADKLGLAQLYQLRGRVGRSHHRAYAYLIVPPRSVMTADAVKRLEAIESLEELGAGF 953
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV---PYKSVQ 683
LA DM IRG G + G+ Q+G + +G DL+ ++L +++ + + + P + +
Sbjct: 954 TLASHDMEIRGAGELLGKDQSGQMQEIGFDLYNDLLERAVNSLKSGQALDLEQPPAQGPE 1013
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D++ +P +Y+ + +V AA +D L + + ++G P + + L
Sbjct: 1014 VDLHAPALIPEDYLPDVHT--RLVLYKRIAAAKDHQALRELQVEMIDRFGLLPEATKTLF 1071
Query: 744 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMI 782
+R A ++GI KI AS + + KV M+I
Sbjct: 1072 ATHKLRLNANEMGIRKIEASSQGGRIHFQPEPKVDPMVI 1110
>gi|402570692|ref|YP_006620035.1| transcription-repair coupling factor Mfd [Desulfosporosinus meridiei
DSM 13257]
gi|402251889|gb|AFQ42164.1| transcription-repair coupling factor Mfd [Desulfosporosinus meridiei
DSM 13257]
Length = 1177
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 255/637 (40%), Positives = 387/637 (60%), Gaps = 20/637 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+ GD+VVH GIG+F GI + +V + +Y I YA G +L V L +
Sbjct: 502 LKPGDFVVHVHHGIGQFTGIERLEV---GGIAKDYFGIRYA-GEDRLYVPLDQLHLLQKY 557
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK-NPAI 271
L + + L KL + W + K K + A+++M +DL++LY R K + + N
Sbjct: 558 LGSAGETLPKLYKLGGS-EWYKVKKKTRSAVKEMAIDLVKLYAQREAIKGYAFSQDNVWQ 616
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF +FPY TPDQ ++ DV+ D+ R PMDRL+CGDVG+GKTEVALRA F V
Sbjct: 617 NEFEDKFPYVETPDQLQSIADVKSDMM-RSRPMDRLLCGDVGYGKTEVALRAAFKAVMDS 675
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT +LA+QHF+ ERF YP I + +LSRF+S+ E++E + +K G ++IIV
Sbjct: 676 KQVAVLVPTTILAQQHFNTFKERFIGYP-ISIEMLSRFRSQKEQKEIIKGLKDGKIDIIV 734
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L V +N+LGLLV+DEEQRFGV KEK+ + K +VDVLTLSATPIPRTL+++L
Sbjct: 735 GTHRILSEAVKFNDLGLLVIDEEQRFGVAHKEKLKTLKGNVDVLTLSATPIPRTLHMSLV 794
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T+++ F + V AI+ E+ RGGQVFYV R++ +++ F
Sbjct: 795 GVRDMSVIETPPEGRYPVQTYVTEFRADVVREAIRREIQRGGQVFYVHNRVEDMDQVTRF 854
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L + P +AHGQ R+LE+ M F + + +L+ T I+E+GLD+ NANT+I+ +
Sbjct: 855 LSELVPEARFGVAHGQMRERELEKVMLDFLEHEMDVLVSTTIIETGLDMPNANTLIIDEA 914
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQLRGRVGR++++A+ YL Y + +L++ A +RLAA+ E E G GF++A +
Sbjct: 915 DHFGLSQLYQLRGRVGRSNRKAYTYLLYKPQKVLTEIAEKRLAAIREFTEYGAGFKIAMR 974
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG +++ +ML E++ ++ V S I++ ++
Sbjct: 975 DLEIRGAGNLIGAQQHGHLAAVGFEMYSQMLKEAVQELRGEKVEEAIEPS--IELQVDAY 1032
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP Y+ + + A +D L + + L ++G P +E L++ + ++ +
Sbjct: 1033 LPDTYVADNQTKASLYQRL--AMVRDEGQLSEMVDELVDRFGTPPREVEHLIEIIRIKLL 1090
Query: 752 AADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSE 788
A + I +I + + V ++ F ID +T E
Sbjct: 1091 AGSLKIEQIQQAKQNVSLR-------FLANIDFLTGE 1120
>gi|289579379|ref|YP_003478006.1| transcription-repair coupling factor [Thermoanaerobacter italicus
Ab9]
gi|289529092|gb|ADD03444.1| transcription-repair coupling factor [Thermoanaerobacter italicus
Ab9]
Length = 1163
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 256/622 (41%), Positives = 384/622 (61%), Gaps = 20/622 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L G YVVH GIGK+ GI+ ++ D + +Y+ I YA G +PV+Q ++ +Y
Sbjct: 501 LEVGSYVVHVNYGIGKYEGIE-KIKVDGIIR-DYLKIIYAGGDTLFVPVEQLD-LVQKYV 557
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
P T P L+KL + W + K K K A++ + DL++LY R K + P P
Sbjct: 558 GP--TDNPPKLNKLG-GSEWLKAKRKAKKAVEDLAKDLIQLYAKRQIAKGHAFSPDTPWQ 614
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF QFPYE T DQ + +++ D+ E++ PMDRL+CGDVG+GKTEVALRA F V+ G
Sbjct: 615 REFEEQFPYEETEDQLRCIKEIKEDM-EKDKPMDRLLCGDVGYGKTEVALRAAFKAVADG 673
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA QH+ ERF ++P +K+ +LSRF++ E+ + + + G ++IIV
Sbjct: 674 KQVAFLCPTTILAYQHYTNFMERFKEFP-VKIEMLSRFRTPKEQAQIIKGLAEGTIDIIV 732
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL + V + +LGLL++DEEQRFGV KEKI K ++DVLTLSATPIPRTL+++L
Sbjct: 733 GTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPRTLHMSLI 792
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ PP +R P++T++ F++E + AI E+ RGGQV++V R+ G+E+
Sbjct: 793 GIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILREIGRGGQVYFVYNRVNGIEKMASL 852
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
++ PG +A+AHGQ QLE+ M F G +L+ T I+E+GLDI N NTIIV D
Sbjct: 853 VKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDA 912
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E E G GF++A +
Sbjct: 913 DKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMR 972
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV--QIDININ 689
D+ IRG G + G +Q G +G +G DL+ ++L E++ + P + + IDI +N
Sbjct: 973 DLEIRGAGNLLGAEQHGHIGAIGYDLYLKLLEEAIRNLKGEA----PKEEITTTIDIKVN 1028
Query: 690 PRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+ S YI +EM + A + +D +++ +E L ++G +E LL+ Y+
Sbjct: 1029 AYIDSSYIEDENLRLEMYKKIASIESRED---MVEISEELVDRFGDYSKPVEALLEIAYL 1085
Query: 749 RRMAADIGITKIYASGKMVGMK 770
+ +A+ IT+I G V +K
Sbjct: 1086 KVIASKANITEITEKGNTVILK 1107
>gi|428277470|ref|YP_005559205.1| transcription-repair coupling factor [Bacillus subtilis subsp. natto
BEST195]
gi|449092768|ref|YP_007425259.1| transcription-repair coupling factor [Bacillus subtilis XF-1]
gi|291482427|dbj|BAI83502.1| transcription-repair coupling factor [Bacillus subtilis subsp. natto
BEST195]
gi|449026683|gb|AGE61922.1| transcription-repair coupling factor [Bacillus subtilis XF-1]
Length = 1177
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 247/611 (40%), Positives = 383/611 (62%), Gaps = 20/611 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQIGDYVVHINHGIGKYLGI--ETLEINGIHKDYLNIHY-QGSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLG-GSEWKRVKKKVETSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + EF + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQREFESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIGDGKQVALLVPTTILAQQHYETIKERFQDYP-INIGLLSRFRTRKEANETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P +A AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + + +++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFET-E 1022
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ ++ +P YI + ++M A I + + + ++G P +E L
Sbjct: 1023 IDVELDAYIPETYIQDGKQKIDMYKRFRSVA--TIEEKNELQDEMIDRFGNYPKEVEYLF 1080
Query: 744 K----KLYVRR 750
K+Y R+
Sbjct: 1081 TVAEMKVYARQ 1091
>gi|404417269|ref|ZP_10999072.1| transcription-repair coupling factor [Staphylococcus arlettae CVD059]
gi|403490367|gb|EJY95909.1| transcription-repair coupling factor [Staphylococcus arlettae CVD059]
Length = 1170
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 245/626 (39%), Positives = 393/626 (62%), Gaps = 19/626 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L+ DYVVH G+G+++G+ + + V +Y+ ++Y G +L PV Q
Sbjct: 490 KIKSYQDLKVSDYVVHVHHGVGRYLGV--ETLEVGGVHKDYIKLQYK-GTDQLFVPVDQM 546
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL T W++ K K + +++ + +L+ LY R +
Sbjct: 547 DQ-VQKY-VASEDKSPK-LNKLGGT-EWKKTKAKVQQSVEDIADELITLYKER--EMSVG 600
Query: 265 YPKNPAIAE---FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
Y P AE F FPY+ T DQ K+ ++++D+ E++ PMDRL+CGDVG+GKTEVA+
Sbjct: 601 YQYGPDTAEQNDFELDFPYDLTADQAKSITEIKQDM-EQQRPMDRLLCGDVGYGKTEVAV 659
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F + GKQ L PT +LA+QH++ + ER +P I + L+SRF++ E +E +
Sbjct: 660 RAAFKAIYEGKQVAFLVPTTILAQQHYETLIERMQDFP-IDIELISRFRTTKEIKETKEG 718
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+K G ++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I S K +VDVLTL+ATP
Sbjct: 719 LKSGKVDIVVGTHKLLGKDISYKDLGLLIVDEEQRFGVRHKERIKSLKTNVDVLTLTATP 778
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL++++ G RD S+I TPP R P++T++ + + A++ E+ R GQVFY+ +
Sbjct: 779 IPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALEREISREGQVFYLYNK 838
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
++ + E + LQ P +I +AHGQ R LEETM F +L+ T I+E+G+D+
Sbjct: 839 VQSIYEKREQLQMLLPDANIGVAHGQMTERDLEETMLGFINHEYDVLVTTTIIETGVDVP 898
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E E
Sbjct: 899 NANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLTETAEERLQAIKEFTE 958
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS 681
LG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ +
Sbjct: 959 LGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIQPETEEAPE 1018
Query: 682 VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
V+I++NI+ LP+EYI + + +E+ + K + L+ + L ++ + P +E
Sbjct: 1019 VEIELNIDAYLPAEYIQNEQAKIEIYKKLRKIESE--AQLIDVKDELLDRFNEYPIEVER 1076
Query: 742 LLKKLYVRRMAADIGITKIYASGKMV 767
LL + ++ A +G+T I GK +
Sbjct: 1077 LLDMMEIKVHALHVGVTSIKDKGKHI 1102
>gi|335040915|ref|ZP_08534035.1| transcription-repair coupling factor [Caldalkalibacillus thermarum
TA2.A1]
gi|334179219|gb|EGL81864.1| transcription-repair coupling factor [Caldalkalibacillus thermarum
TA2.A1]
Length = 1192
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 250/619 (40%), Positives = 384/619 (62%), Gaps = 31/619 (5%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI-----EYVFIEYA-DGMAKLPVKQASRM 207
L GDYVVH GIG++VG+K T+ I +Y+ I+YA D +PV+ ++
Sbjct: 500 LNEGDYVVHVNHGIGRYVGLK-------TLEINGAHKDYLHIQYAGDDKLYVPVENIDQV 552
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK 267
+ L +E K P+ L +L W+R K++ + ++Q + L++LY R + P Y
Sbjct: 553 --QKYLGSEDKAPK-LYRLGGN-EWKRVKSRVRSSVQDIAEHLLKLYAKR--EATPGYAF 606
Query: 268 NPAIA---EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
+P EF A FPYE TPDQK+A +++RD+ E+ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 607 SPDTEIHREFDALFPYEETPDQKRAIEEIKRDM-EKPRPMDRLLCGDVGYGKTEVAIRAA 665
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V KQ VL PT +LA+QH++ ERF +P +++ +LSRF+++ E+ E + IK+
Sbjct: 666 FKAVMDSKQVAVLVPTTILAQQHYETFKERFRDFP-VEIDVLSRFRTRKEQNETVKKIKN 724
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++II+GTH LL V + +LGLL+VDEEQRFGV KEKI K +VDVLTL+ATPIPR
Sbjct: 725 GVVDIIIGTHRLLSKDVQFKDLGLLIVDEEQRFGVAHKEKIKQLKANVDVLTLTATPIPR 784
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R P++T++ + V AI+ EL RGGQV++V +++G
Sbjct: 785 TLHMSMLGVRDLSVIETPPENRFPVQTYVVEYQGALVREAIERELARGGQVYFVYNQVQG 844
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E + ++ P +A+AHGQ +LE M F G +L+ T I+E+G+DI N N
Sbjct: 845 IERKAEEIRALVPDARVAVAHGQMKETELEAIMLDFLDGEYDVLVSTTIIETGVDIPNVN 904
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 905 TLIVYDADKMGLSQLYQLRGRVGRSNRTAYAYFTYQRGKVLSEVAEKRLEAIKEFTELGS 964
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML E++ ++ P + +++
Sbjct: 965 GFKIAMRDLAIRGAGNLLGAEQHGFINSVGFDLYSQMLKEAIEELKGERPQEEPVE-LEM 1023
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D++I+ +P +Y+ + +EM + AA + + + E ++G P + L+K
Sbjct: 1024 DVHIDAYIPEDYVQDSKQKIEMYKKV--AAVSTLEDVRKVEEEFMDRFGAPPPPVGRLIK 1081
Query: 745 ----KLYVRRMAADIGITK 759
K Y +R D + K
Sbjct: 1082 LSKLKAYAKRYKLDTIVLK 1100
>gi|148381479|ref|YP_001256020.1| transcription-repair coupling factor [Clostridium botulinum A str.
ATCC 3502]
gi|153934098|ref|YP_001385854.1| transcription-repair coupling factor [Clostridium botulinum A str.
ATCC 19397]
gi|153937373|ref|YP_001389261.1| transcription-repair coupling factor [Clostridium botulinum A str.
Hall]
gi|148290963|emb|CAL85099.1| transcription-repair coupling factor [Clostridium botulinum A str.
ATCC 3502]
gi|152930142|gb|ABS35642.1| transcription-repair coupling factor [Clostridium botulinum A str.
ATCC 19397]
gi|152933287|gb|ABS38786.1| transcription-repair coupling factor [Clostridium botulinum A str.
Hall]
Length = 1168
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 252/676 (37%), Positives = 409/676 (60%), Gaps = 31/676 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+ GD+VVH GIG F GIK ++Q + +E ++ ++D +PV+Q M+ RY
Sbjct: 501 LKPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIY--HSDDKLYVPVEQLD-MVQRY- 556
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+ +E K+P+ +SKL ++ W + K K K +I+++ DL++LY R K Y +
Sbjct: 557 IGSEGKKPK-VSKLG-SSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGYKYSDDTVWQ 614
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F +FPYE TPDQ A D++RD+ E PMDRL+CGDVG+GKTEVA+RA F V G
Sbjct: 615 KQFEEEFPYEETPDQLLAIEDIKRDM-ESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDG 673
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ +RFS +P I V ++SRF++ +E++ + IK G+++I++
Sbjct: 674 KQVAFLVPTTILAQQHYNNFKQRFSDFP-ITVDVISRFRTLSEQKATIKSIKEGNVDILI 732
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + + +LGLL++DEEQRFGVK KEK+ + K +VDVLTLSATPIPRTL+++L
Sbjct: 733 GTHRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLV 792
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP ER P++T++ ++ + + +I E+ RGGQ+++V R++ + E +
Sbjct: 793 GVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVYNRVESIHEMASY 852
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+ + P + IAHGQ ++LE + F + ILI T I+E+G+DI+N NT+I+ D
Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDA 912
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR ++ A+ YL Y +L++ A +RL A+++ ELG GF++A K
Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDIN 687
D+ IRG G + G Q G + ++G DL+ ML +++ +D+ V +++
Sbjct: 973 DLEIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPV------ETSVELK 1026
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
I+ +P+ YI +E+ + ++ + M E L ++ P S+ L+ Y
Sbjct: 1027 IDAYIPNTYIKDETQKIEVYKKIASIDSKEEF--MDIEEELEDRFSDIPISVYNLMNISY 1084
Query: 748 VRRMAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEV-----HRNSLTFEG 798
+R + + I +I V K+++ +K+ K+++D + EV + ++ +
Sbjct: 1085 IRSLGKKVDIEEIKEISNEVVFQFEDKSSLREKIVKIIMDKYSKEVAFKLNEKPAIGYNI 1144
Query: 799 DQIKAELLLELPREQL 814
IK E LL + R L
Sbjct: 1145 KNIKKEQLLPIIRNFL 1160
>gi|153940210|ref|YP_001392893.1| transcription-repair coupling factor [Clostridium botulinum F str.
Langeland]
gi|384463853|ref|YP_005676448.1| transcription-repair coupling factor [Clostridium botulinum F str.
230613]
gi|152936106|gb|ABS41604.1| transcription-repair coupling factor [Clostridium botulinum F str.
Langeland]
gi|295320870|gb|ADG01248.1| transcription-repair coupling factor [Clostridium botulinum F str.
230613]
Length = 1168
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 252/676 (37%), Positives = 409/676 (60%), Gaps = 31/676 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+ GD+VVH GIG F GIK ++Q + +E ++ ++D +PV+Q M+ RY
Sbjct: 501 LKPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIY--HSDDKLYVPVEQLD-MVQRY- 556
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+ +E K+P+ +SKL ++ W + K K K +I+++ DL++LY R K Y +
Sbjct: 557 IGSEGKKPK-VSKLG-SSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGYKYSDDTVWQ 614
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F +FPYE TPDQ A D++RD+ E PMDRL+CGDVG+GKTEVA+RA F V G
Sbjct: 615 KQFEEEFPYEETPDQLLAIEDIKRDM-ESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDG 673
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ +RFS +P I V ++SRF++ +E++ + IK G+++I++
Sbjct: 674 KQVAFLVPTTILAQQHYNNFKQRFSDFP-ITVDVISRFRTLSEQKATIKSIKEGNVDILI 732
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + + +LGLL++DEEQRFGVK KEK+ + K +VDVLTLSATPIPRTL+++L
Sbjct: 733 GTHRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLV 792
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP ER P++T++ ++ + + +I E+ RGGQ+++V R++ + E +
Sbjct: 793 GVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVYNRVESIHEMASY 852
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+ + P + IAHGQ ++LE + F + ILI T I+E+G+DI+N NT+I+ D
Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELEHVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDA 912
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR ++ A+ YL Y +L++ A +RL A+++ ELG GF++A K
Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS----KVDEHCVISVPYKSVQIDIN 687
D+ IRG G + G Q G + ++G DL+ ML +++ +D+ V +++
Sbjct: 973 DLEIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPV------ETSVELK 1026
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
I+ +P+ YI +E+ + ++ + M E L ++ P S+ L+ Y
Sbjct: 1027 IDAYIPNTYIKDETQKIEVYKKIASIDSKEEF--MDIEEELEDRFSDIPISVYNLMNISY 1084
Query: 748 VRRMAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEV-----HRNSLTFEG 798
+R + + I +I V K+++ +K+ K+++D + EV + ++ +
Sbjct: 1085 IRSLGKKVDIEEIKEISNEVVFQFEDKSSLREKIVKIIMDKYSKEVAFKLNEKPAIGYNI 1144
Query: 799 DQIKAELLLELPREQL 814
IK E LL + R L
Sbjct: 1145 KNIKKEQLLPIIRNFL 1160
>gi|392939893|ref|ZP_10305537.1| LOW QUALITY PROTEIN: transcription-repair coupling factor Mfd
[Thermoanaerobacter siderophilus SR4]
gi|392291643|gb|EIW00087.1| LOW QUALITY PROTEIN: transcription-repair coupling factor Mfd
[Thermoanaerobacter siderophilus SR4]
Length = 1169
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 257/622 (41%), Positives = 385/622 (61%), Gaps = 20/622 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L G YVVH GIGK+ GI+ ++ D + +Y+ I YA G +PV+Q ++ +Y
Sbjct: 501 LEVGSYVVHVNYGIGKYEGIE-KIKVDGIIR-DYLKIIYAGGDTLFVPVEQLD-LVQKYV 557
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
P T P L+KL + W R K K K A+ + DL++LY R K + P P
Sbjct: 558 GP--TDNPPKLNKLG-GSEWLRAKRKAKKAVADLAKDLIQLYAKRQMVKGHAFSPDTPWQ 614
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF QFPYE T DQ + +++ D+ E++ PMDRL+CGDVG+GKTEVALRA F V+ G
Sbjct: 615 KEFEEQFPYEETEDQLRCIKEIKEDM-EKDRPMDRLLCGDVGYGKTEVALRAAFKAVADG 673
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA QH+ ERF ++P +K+ +LSRF++ E+ + + + G ++IIV
Sbjct: 674 KQVAFLCPTTILAYQHYTNFIERFKEFP-VKIEMLSRFRTPKEQAQIIKGLAEGTIDIIV 732
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL + V + +LGLL++DEEQRFGV KEKI K ++DVLTLSATPIPRTL+++L
Sbjct: 733 GTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPRTLHMSLI 792
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ PP +R P++T++ F++E + AI E+ RGGQV++V R+ G+E+
Sbjct: 793 GIRDMSVLENPPEDRFPVETYVMEFNEELIKDAILREIGRGGQVYFVYNRVNGIEKMASL 852
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
++ PG +A+AHGQ QLE+ M F G +L+ T I+E+GLDI N NTIIV D
Sbjct: 853 VKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPNVNTIIVYDA 912
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E E G GF++A +
Sbjct: 913 DKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMR 972
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV--QIDININ 689
D+ IRG G + G +Q G + +G DL+ ++L E++ + P + + IDI +N
Sbjct: 973 DLEIRGAGNLLGAEQHGHINAIGYDLYLKLLEEAIRNLKGEA----PKEEITTTIDIKVN 1028
Query: 690 PRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+ S YI +EM + A + +D +++ +E L ++G P +E LL+ Y+
Sbjct: 1029 AYIDSSYIEDENLRLEMYKKIASIESRED---MIEISEELVDRFGDYPKPVEALLEIAYL 1085
Query: 749 RRMAADIGITKIYASGKMVGMK 770
+ +A+ + IT+I G +V +K
Sbjct: 1086 KAIASQLYITEITEKGNVVILK 1107
>gi|332297986|ref|YP_004439908.1| transcription-repair coupling factor [Treponema brennaborense DSM
12168]
gi|332181089|gb|AEE16777.1| transcription-repair coupling factor [Treponema brennaborense DSM
12168]
Length = 1185
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 244/620 (39%), Positives = 385/620 (62%), Gaps = 16/620 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L GDYVVH GIG F GI + K +Y+ +EY D + +P++Q + ++ RY
Sbjct: 521 LNPGDYVVHVNYGIGLFKGI--ERVKAMGNERDYIKLEYDDEEIVFIPIEQVN-LVQRY- 576
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+ NE PR L +L + +WE RK K K +++ + L++LY R + P+PK+
Sbjct: 577 IGNEGCAPR-LDRLG-SKSWENRKNKVKKSVEDIAQKLIDLYSRRKAARGFPFPKDTEWQ 634
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
F A FPY+ T DQ +V+ D+ E+ PMDRLICGDVG+GKTEVA+RA F V G
Sbjct: 635 TAFEAAFPYDETDDQLTVTAEVKADM-EKPVPMDRLICGDVGYGKTEVAMRAAFKAVMGG 693
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ LAPT +LA+QH++ +ERF +P +++ +SRF SKAE++ L+ +K G ++I+V
Sbjct: 694 KQVAFLAPTTILAEQHYETCTERFENFP-VRIAHMSRFVSKAEQKNILEKLKTGGVDILV 752
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH ++ V++ LGL+++DEEQRFGVK KE++ K ++D L +SATPIPRTL+++L
Sbjct: 753 GTHRIIQKDVIFKELGLMIIDEEQRFGVKDKERLKELKTNIDSLAMSATPIPRTLHMSLL 812
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD SL++TPP R PI+T + +++ ++V +AI+ E +RGGQVFY+ R++ LEE
Sbjct: 813 KIRDMSLLTTPPQNRQPIETVIDSYNDDRVATAIRREAERGGQVFYLHNRVETLEETRIK 872
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L+Q P + + AHGQ + +L++ +F G +L+ T I+E+G+DI N NTII+
Sbjct: 873 LEQLVPEMLVDTAHGQMSAGELDDIFRRFKMGGFHVLVATTIIENGIDIPNVNTIIIDRA 932
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+G++QLYQLRGRVGR+D++A+AYL YP+ LS+ A++RL + + ELG GF++A K
Sbjct: 933 DMYGVSQLYQLRGRVGRSDRKAYAYLLYPENKALSEIAMKRLQVISDFTELGSGFKIAMK 992
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV-DEHCVISVPYKSVQIDININP 690
DM IRG G + G+ Q+G++ +VG DL+ +L E++ ++ ++H V +++
Sbjct: 993 DMEIRGAGNLLGKDQSGEMYSVGFDLYLRLLEEAVQRLTNDHYEAE---NEVLLELEYTG 1049
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+P YI + + ME+ + A +D L + L+ ++G P + LL +R
Sbjct: 1050 FIPDSYITNPQTKMEIYKKISGIANRD--ELERMYGELQDRFGPIPDEVSSLLSLAEIRI 1107
Query: 751 MAADIGITKIYASGKMVGMK 770
+ + I + G V ++
Sbjct: 1108 ICKKLHIATLRERGGKVNIE 1127
>gi|15612632|ref|NP_240935.1| transcription-repair coupling factor (TRCF) [Bacillus halodurans
C-125]
gi|10172681|dbj|BAB03788.1| transcription-repair coupling factor (TRCF) [Bacillus halodurans
C-125]
Length = 1181
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 246/620 (39%), Positives = 384/620 (61%), Gaps = 16/620 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GD VVH GIGK++GI + + + V +Y+ I YA G KL PV+Q
Sbjct: 494 RIKNYSELKVGDLVVHTNHGIGKYLGI--ETLEINGVHKDYLHIRYA-GNDKLYVPVEQI 550
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + E K P+ S + W++ K + + +++ + DL++LY R K
Sbjct: 551 DQ-VQKY-VGAEDKDPKLYS--LGKSDWKKVKRRVQSSVEDIADDLIKLYAEREASKGFA 606
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P P AEF A FPY+ T DQ +A +++ D+ E+E PMDRL+CGDVG+GKTEVA+RA
Sbjct: 607 FAPDGPEQAEFEASFPYQETEDQLRAIQEIKEDM-EKERPMDRLLCGDVGYGKTEVAIRA 665
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + GKQ +L PT +LA+QHF+ + ERF+ YP I +G+LSRF+S+ E+ + L +K
Sbjct: 666 AFKAIMNGKQVAILVPTTILAQQHFETIQERFADYP-INIGVLSRFRSRKEQSQTLKGLK 724
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++++VGTH LL V + +LGLL+VDEEQRFGV KEKI K ++DVLTL+ATPIP
Sbjct: 725 AGSVDLVVGTHRLLSKDVQFKDLGLLIVDEEQRFGVTHKEKIKQLKANIDVLTLTATPIP 784
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++
Sbjct: 785 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNSPLVREAIERELSRGGQVYFLYNRVE 844
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E + + P ++ AHGQ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 845 NIERMANEISMLVPDARVSFAHGQMKESELESIMLAFLEGESDVLVTTTIIETGVDIPNV 904
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I+ + GL+QLYQ+RGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 905 NTLIIHGADKMGLSQLYQIRGRVGRSNRVAYAYFTYQRDKVLSEVAEKRLQAIKEFTELG 964
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ K P ++V+
Sbjct: 965 SGFKIAMRDLAIRGAGNLLGAQQHGFIESVGFDLYSQMLKEAIEKRKGEQPKEEP-RNVE 1023
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ ++ +P YI + +EM + I + + + ++G+ P + LL
Sbjct: 1024 IDVQVDAYIPDSYIQDAKQKIEMYKRFRGV--ETIEEINDLKDEMFDRFGEYPQEVSDLL 1081
Query: 744 KKLYVRRMAADIGITKIYAS 763
+ ++ +A G+ I S
Sbjct: 1082 QLTTIKIIAYQEGVESIVES 1101
>gi|158321662|ref|YP_001514169.1| transcription-repair coupling factor [Alkaliphilus oremlandii OhILAs]
gi|158141861|gb|ABW20173.1| transcription-repair coupling factor [Alkaliphilus oremlandii OhILAs]
Length = 1174
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 246/617 (39%), Positives = 390/617 (63%), Gaps = 16/617 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L+ GDYVVH+ GIGK++GI + K V +Y+ I Y+ +G +P Q ++ +Y
Sbjct: 502 LKVGDYVVHEGHGIGKYIGI--EELKVEGVKKDYLKIRYSGEGFLYVPTDQMD-LIQKYI 558
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
++ P L+KL + W + KTK K AI+ M +L++LY R K K + P +
Sbjct: 559 GSDDA--PPKLNKLGGS-EWAKTKTKVKKAIEDMAGELIKLYAEREKTKGHAFSPDSDWQ 615
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F FPYE TPDQ + +V++D+ E+E MDRL+CGDVG+GKTEVA+RA F V
Sbjct: 616 KQFEELFPYEETPDQLRCIEEVKQDM-EKERAMDRLLCGDVGYGKTEVAIRAAFKAVGDS 674
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ +RFS +P I V +LSRF++ +++ ++ I+ G+++I++
Sbjct: 675 KQVAFLVPTTILAQQHYNTFKQRFSDFP-ITVEMLSRFKNATAQKKIIENIRTGNVDIVI 733
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL + Y +LGLL+VDEEQRFGVK KE + K S+DVLTL+ATPIPRTL++++
Sbjct: 734 GTHRLLSKDIEYKDLGLLIVDEEQRFGVKHKEALKKLKKSIDVLTLTATPIPRTLHMSMI 793
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I PP ER P++T++ +S+ V+ AI EL RGGQV+YV R++G+ + +
Sbjct: 794 GIRDMSVIEDPPEERFPVQTYVLGYSESMVVDAISRELARGGQVYYVYNRVQGIHQVANN 853
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P +A+AHGQ R+LE+ M ++ G IL+ T I+E+G+DI N NTII+QD
Sbjct: 854 LKELVPQGRVAVAHGQMSERELEKIMLEYMNGEYDILVSTTIIETGMDISNVNTIIIQDA 913
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+ ++ +AYL Y +LS+ A +RL A++E E G GF++A +
Sbjct: 914 DKLGLSQLYQLRGRVGRSYRQGYAYLMYEKDKILSEVAEKRLKAIKEFTEFGSGFKIAMR 973
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G +Q G + +G DL+ ++L E++ ++ + ++ I++N+N
Sbjct: 974 DLEIRGAGNLLGGEQHGHMAAIGYDLYVKLLEETVGEM--RGEYTEKFEDTTIELNVNAY 1031
Query: 692 LPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+ +YI + + +E+ + A ++D++ + E + ++G P S LL Y++
Sbjct: 1032 ISEKYIGNPSHKIEIYKKIASIRNKEDMY---RVEEEIEDRFGDIPLSARNLLLISYIKS 1088
Query: 751 MAADIGITKIYASGKMV 767
+A + +T I K +
Sbjct: 1089 LAKGLKVTAITQKDKEI 1105
>gi|170756439|ref|YP_001783179.1| transcription-repair coupling factor [Clostridium botulinum B1 str.
Okra]
gi|429246984|ref|ZP_19210264.1| transcription-repair coupling factor [Clostridium botulinum
CFSAN001628]
gi|169121651|gb|ACA45487.1| transcription-repair coupling factor [Clostridium botulinum B1 str.
Okra]
gi|428755990|gb|EKX78581.1| transcription-repair coupling factor [Clostridium botulinum
CFSAN001628]
Length = 1168
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 252/676 (37%), Positives = 409/676 (60%), Gaps = 31/676 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+ GD+VVH GIG F GIK ++Q + +E ++ ++D +PV+Q M+ RY
Sbjct: 501 LKPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIY--HSDDKLYVPVEQLD-MVQRY- 556
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+ +E K+P+ +SKL ++ W + K K K +I+++ DL++LY R K Y +
Sbjct: 557 IGSEGKKPK-VSKLG-SSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGYKYSDDTVWQ 614
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F +FPYE TPDQ A D++RD+ E PMDRL+CGDVG+GKTEVA+RA F V G
Sbjct: 615 KQFEEEFPYEETPDQLLAIEDIKRDM-ESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDG 673
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ +RFS +P I V ++SRF++ +E++ + IK G+++I++
Sbjct: 674 KQVAFLVPTTILAQQHYNNFKQRFSDFP-ITVDVISRFRTLSEQKATIKSIKEGNVDILI 732
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + + +LGLL++DEEQRFGVK KEK+ + K +VDVLTLSATPIPRTL+++L
Sbjct: 733 GTHRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLV 792
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP ER P++T++ ++ + + +I E+ RGGQ+++V R++ + E +
Sbjct: 793 GVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVYNRVESIHEMASY 852
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+ + P + IAHGQ ++LE + F + ILI T I+E+G+DI+N NT+I+ D
Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDA 912
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR ++ A+ YL Y +L++ A +RL A+++ ELG GF++A K
Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS----KVDEHCVISVPYKSVQIDIN 687
D+ IRG G + G Q G + ++G DL+ ML +++ +D+ V +++
Sbjct: 973 DLEIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPV------ETSVELK 1026
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
I+ +P+ YI +E+ + ++ + M E L ++ P S+ L+ Y
Sbjct: 1027 IDAYIPNTYIKDETQKIEVYKKIASIDSKEEF--MDIEEELEDRFSDIPISVYNLMNISY 1084
Query: 748 VRRMAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEV-----HRNSLTFEG 798
+R + + I +I V K+++ +K+ K+++D + EV + ++ +
Sbjct: 1085 IRSLGKKLDIEEIKEISNEVVFQFEDKSSLREKIVKIIMDKYSKEVAFKLNEKPAIGYNI 1144
Query: 799 DQIKAELLLELPREQL 814
IK E LL + R L
Sbjct: 1145 KNIKKEQLLPIIRNFL 1160
>gi|167747443|ref|ZP_02419570.1| hypothetical protein ANACAC_02163 [Anaerostipes caccae DSM 14662]
gi|317471172|ref|ZP_07930543.1| transcription-repair coupling factor [Anaerostipes sp. 3_2_56FAA]
gi|167652805|gb|EDR96934.1| transcription-repair coupling factor [Anaerostipes caccae DSM 14662]
gi|316901387|gb|EFV23330.1| transcription-repair coupling factor [Anaerostipes sp. 3_2_56FAA]
Length = 1175
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 250/618 (40%), Positives = 374/618 (60%), Gaps = 13/618 (2%)
Query: 157 GDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPN 215
GDYVVH+K G+G + GI K V + V +Y+ IEY G + A + +Y N
Sbjct: 508 GDYVVHEKHGVGIYRGIEKITV---NNVEKDYISIEYKGGDNLFILASALDQIAKYASAN 564
Query: 216 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA-EF 274
K+PR L+KL W++ + K +++ +L+ELY R ++ Y K+ EF
Sbjct: 565 -AKKPR-LNKLG-GNEWKKTTKRVKGQVRETAKELVELYAVRQAKEGYVYDKDTVWQREF 621
Query: 275 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 334
FPYE T DQ A DV+RD+ E MDRLICGDVG+GKTEVA+RA F V+ GKQ
Sbjct: 622 EEMFPYEETQDQLNAIEDVKRDM-ESTKIMDRLICGDVGYGKTEVAIRAAFKAVTNGKQV 680
Query: 335 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 394
L PT +LA+QH++ ERF YP + V ++SRF + E++E ++ +K G +++++GTH
Sbjct: 681 AYLVPTTILAQQHYNTFCERFQNYP-MTVRVMSRFCTPREQKETMEGLKKGIVDVVIGTH 739
Query: 395 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 454
LL V Y +LGLL++DEEQRFGV KEKI + K VDVL+LSATPIPRTL+++L G R
Sbjct: 740 RLLSKDVKYKDLGLLIIDEEQRFGVGHKEKIKTMKKDVDVLSLSATPIPRTLHMSLIGIR 799
Query: 455 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 514
D S++ PP +R I+T++ +++E V A+ E+ RGGQV+YV R+ + E LQ+
Sbjct: 800 DMSILEEPPHDRRAIQTYVMEYNEELVKEAVHREMTRGGQVYYVYNRVNNIAEITSELQK 859
Query: 515 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 574
P +A AHGQ R+LE M +F + I +L+ T I+E+GLDI N NT+I+ D Q
Sbjct: 860 LLPNAKVAFAHGQMRERELENIMMQFMEKEIDVLVSTTIIETGLDIPNVNTMIIHDANQL 919
Query: 575 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 634
GL+QLYQLRGRVGR+++ A A+L Y +LL + A +RL A+ E +LG G+++A +D+
Sbjct: 920 GLSQLYQLRGRVGRSNRNAFAFLMYKRDTLLKETAEKRLQAIREFTDLGSGYKIAMRDLE 979
Query: 635 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 694
IRG G + GE+Q+G + VG DL+ +ML +++ ++ + + +D+NI+ LPS
Sbjct: 980 IRGAGNLLGEEQSGHMEAVGYDLYCKMLNDAVLRLKGELSEDTDFDTT-LDLNIDAFLPS 1038
Query: 695 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 754
YI + +E+ +D MQ + L ++G P ++ LL ++ MA
Sbjct: 1039 AYIRNEVEKLELYKRISAIETKDELEDMQ--DELLDRFGDLPAAVVNLLHIALLKSMAHH 1096
Query: 755 IGITKIYASGKMVGMKTN 772
+T + G+ V + N
Sbjct: 1097 AYMTDVKQKGEKVSFEMN 1114
>gi|386346936|ref|YP_006045185.1| transcription-repair coupling factor [Spirochaeta thermophila DSM
6578]
gi|339411903|gb|AEJ61468.1| transcription-repair coupling factor [Spirochaeta thermophila DSM
6578]
Length = 1127
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 232/528 (43%), Positives = 353/528 (66%), Gaps = 13/528 (2%)
Query: 146 SYKVDPY-SLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYA-DGMAKLPVK 202
S +D + L GDYVVH GIG+F+GIK V ++ +Y+ +EYA + +P++
Sbjct: 455 SAPIDSFVELSPGDYVVHVHHGIGRFLGIKRMKVGENER---DYLHLEYAGEEYVFVPIE 511
Query: 203 QASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
Q + ++ RY + + PR L KL +++W++RK + K +++ + L+ +Y R
Sbjct: 512 QVN-LVQRY-IGSSDAAPR-LDKLG-SSSWQKRKERVKKSVEDLAKRLLAIYSRRKLAHG 567
Query: 263 PPYPKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
+P + EF A+FP+E T DQ + +V+RD+ E PMDRL+CGDVGFGKTE+AL
Sbjct: 568 FAFPPDTEWQMEFEARFPFEETEDQLRCIEEVKRDM-ESPRPMDRLVCGDVGFGKTEIAL 626
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F V+AGKQ +LAPT +L +QH++ ER +P ++ +LSRF E++E L
Sbjct: 627 RAAFKAVTAGKQVAILAPTTILVEQHYETFQERLEGFP-VRAAMLSRFVPVPEQKEILKA 685
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
++ G ++I++GTH +L VV+ +LGLLV+DEEQRFGVK KE++ K SVD LTL+ATP
Sbjct: 686 LREGKIDILIGTHRILQKDVVFKDLGLLVIDEEQRFGVKDKERLKELKASVDCLTLTATP 745
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL+++L RD SL+ TPP ER PI+TH+ FS+E + AI+ E++RGGQVFY+ R
Sbjct: 746 IPRTLHMSLLKIRDISLLETPPRERRPIETHILEFSEEVIARAIRREVERGGQVFYLHNR 805
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
++ L + F+++ P V + +AHG+ S QLEE M +F G +L+ T I+E+G++I
Sbjct: 806 VETLPQVKTFIERLVPEVMVEVAHGKMSSHQLEEIMHRFIHGGFHVLVSTTIIENGINIP 865
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANTII+ +G+AQLYQLRGRVGR+D+ A+AYLFYP + +S+ A +RL + + E
Sbjct: 866 NANTIIIDRADMYGIAQLYQLRGRVGRSDRTAYAYLFYPAQREISELAAKRLQVIADHTE 925
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV 669
LG GF++A KD+ +RG G + G +Q+GD+ +VG D++ +L E++ ++
Sbjct: 926 LGAGFKVALKDLEVRGAGNLLGREQSGDIHSVGFDMYLRLLDEAIREL 973
>gi|443635053|ref|ZP_21119223.1| transcription-repair coupling factor [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443345106|gb|ELS59173.1| transcription-repair coupling factor [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 1177
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 238/563 (42%), Positives = 366/563 (65%), Gaps = 14/563 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQIGDYVVHINHGIGKYLGI--ETLEINGIHKDYLNIHY-QGSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLGGS-EWKRVKKKVETSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + EF + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQREFESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIGDGKQVALLVPTTILAQQHYETIKERFQDYP-INIGLLSRFRTRKEANETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P +A AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + + +++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFET-E 1022
Query: 684 IDININPRLPSEYINHLENPMEM 706
ID+ ++ +P YI + ++M
Sbjct: 1023 IDVELDAYIPETYIQDGKQKIDM 1045
>gi|78043233|ref|YP_359072.1| transcription-repair coupling factor [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995348|gb|ABB14247.1| transcription-repair coupling factor [Carboxydothermus
hydrogenoformans Z-2901]
Length = 1160
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 247/618 (39%), Positives = 386/618 (62%), Gaps = 20/618 (3%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRML 208
+P+S GDYVVH GIGK++GIK V+ V +Y+ I Y + +P +Q +
Sbjct: 495 EPFS--PGDYVVHPVHGIGKYLGIK-PVEVGGNVK-DYLVIAYQGEDRLYVPPEQVGNLQ 550
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
+ E P LS+L + W+R K + K A+++M L+ELY R+ +P + +
Sbjct: 551 KYVGVDGE---PPKLSRLGGSD-WQRVKNRVKAAVREMAEGLLELYAKRMA--KPGFAFS 604
Query: 269 PAIA---EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
P EF +FPYE TPDQ KA +V+RD+ E+ MDRL+CGDVG+GKTEVALRA F
Sbjct: 605 PDTVWQKEFEERFPYEETPDQLKAIEEVKRDM-EKPKVMDRLLCGDVGYGKTEVALRAAF 663
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
V GKQ VL PT +LA+QH++ ERFS YP +++ LLSRFQ+ E++E + +K G
Sbjct: 664 KAVMDGKQVAVLTPTTLLAQQHYNTFKERFSGYP-VEIRLLSRFQTAREQKEIIKELKRG 722
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++I++GTH LL V + +LGL++VDEEQRFGV QKE++ +VDVLTL+ATPIPRT
Sbjct: 723 KVDIVIGTHRLLQDDVQFYDLGLMIVDEEQRFGVAQKERLKILTETVDVLTLTATPIPRT 782
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L++AL G RD S+++TPP R P++T++ + AI+ EL RGGQVF+V R+ +
Sbjct: 783 LHMALMGIRDLSVLNTPPENRFPVQTYVLEEDPFIIRDAIRRELGRGGQVFFVHNRVSDI 842
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
+E ++Q P +A+AHGQ QLE M +F G +L+ T I+E+G+D+ N NT
Sbjct: 843 DEVAAWVQSLVPEAKVAVAHGQMKEEQLERVMLEFISGKYDVLVSTTIIETGIDLPNVNT 902
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
+I+++ +FGLAQLYQLRGRVGR+++ A+AYL Y +L + A +RLAA++E E G G
Sbjct: 903 LIIKNADRFGLAQLYQLRGRVGRSNRIAYAYLMYEKDKVLREAAEKRLAAIKEFTEFGSG 962
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
+LA +D+ IRG G + G +Q G + VG D++ ++L E+++++ ++ Q++
Sbjct: 963 LKLAMRDLEIRGAGNLLGPEQHGHIAAVGFDMYMKLLQETVAELKGQ--VTSEEVEPQLE 1020
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+N+ +P YI + +EM + +++ L + L ++G+ P +E L++
Sbjct: 1021 LNLTAYIPESYIPDEKQKIEMYRRLSRT--RNLEDLEDVVDELIDRFGEIPPEVENLIRL 1078
Query: 746 LYVRRMAADIGITKIYAS 763
+ ++ +A+ + + I+ +
Sbjct: 1079 IKIKIVASKLKVKGIFQT 1096
>gi|329925538|ref|ZP_08280412.1| transcription-repair coupling factor [Paenibacillus sp. HGF5]
gi|328939821|gb|EGG36161.1| transcription-repair coupling factor [Paenibacillus sp. HGF5]
Length = 1175
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 250/622 (40%), Positives = 381/622 (61%), Gaps = 20/622 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH+ GIGK++GI + + + +Y+ I YA G +P++Q ++ +Y
Sbjct: 489 LKVGDYVVHQNHGIGKYMGIG--TLEINGIHKDYMHILYAGGDKLSVPIEQID-LIQKY- 544
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNP 269
+ +E K P+ + KL W R K K + ++Q + DL++LY R Q P Y
Sbjct: 545 VGSEDKEPK-VYKLG-GNEWTRVKNKVRSSVQDIADDLIKLYAER--QSAPGYGFEKDTS 600
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF FPY+ TPDQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 601 EQQEFEDMFPYDETPDQLRAITEIKKDM-EQNRPMDRLLCGDVGYGKTEVAVRAAFKAAI 659
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQ VL PT +LA+QH++ ERF+ YP I + +LSRF+S+ E+ E + +K G ++I
Sbjct: 660 EGKQVAVLVPTTILAQQHYETFRERFANYP-INIQVLSRFRSRKEQNETIKKVKQGSVDI 718
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH LL +V+ +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL+++
Sbjct: 719 LIGTHRLLSQDIVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMS 778
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
+ G RD S+I TPP R P++T++ S+ V AI+ EL RGGQV+Y+ R++G++E
Sbjct: 779 MLGVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIERELARGGQVYYLYNRVQGIQEMA 838
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+ P + + HGQ +LE+T+ F G +L+ T+I+E+G+DI N NT+IV
Sbjct: 839 AQISMLVPEARVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVH 898
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E ELG GF++A
Sbjct: 899 DADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIA 958
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK--SVQID 685
+D+ IRG G + G +Q G + +VG DL+ +ML E + KV S+P K + ID
Sbjct: 959 MRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIQKRKVSMLGEPSLPSKDWNTSID 1018
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ I+ LPS+YI +E+ + + D + + L ++G+ P ++ LL
Sbjct: 1019 LGIDAYLPSDYIYDSIQKIEIYKKVAVVSSIDESA--ELEDELLDRFGELPLAVSNLLAV 1076
Query: 746 LYVRRMAADIGITKIYASGKMV 767
++ GI I G V
Sbjct: 1077 SRLKVYGRTYGIDSITQRGDDV 1098
>gi|225575737|ref|ZP_03784347.1| hypothetical protein RUMHYD_03830, partial [Blautia hydrogenotrophica
DSM 10507]
gi|225037050|gb|EEG47296.1| transcription-repair coupling factor, partial [Blautia
hydrogenotrophica DSM 10507]
Length = 1044
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 259/667 (38%), Positives = 400/667 (59%), Gaps = 14/667 (2%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLY 209
D L GDYVVH+ G+G + GI+ V+ D V +Y+ IEY DG + L
Sbjct: 367 DFAELTVGDYVVHENHGLGIYRGIE-KVEVDKVVK-DYIKIEYRDGSNLYILATQLDALQ 424
Query: 210 RYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNP 269
+Y E K PR L+KL T W R KT+ K A++ + DL++LY R +++ Y +
Sbjct: 425 KYA-GQEAKTPR-LNKLG-TQEWNRTKTRVKGAVKDIARDLVKLYATRQEKEGFVYGTDT 481
Query: 270 AI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328
EF FPYE T DQ +A D +RD+ E MDRLICGDVG+GKTE+ALRA F +
Sbjct: 482 VWQKEFEEMFPYEETEDQIQAIEDTKRDM-ESTKIMDRLICGDVGYGKTEIALRAAFKAI 540
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 388
GKQ + L PT +LA+QH++ +R ++P ++V LL RF++ AE+ + L+ +K G ++
Sbjct: 541 QEGKQVVYLVPTTILAQQHYNTFVQRMKEFP-VRVELLCRFRTPAEQRKTLEGLKKGWVD 599
Query: 389 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 448
+++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL++
Sbjct: 600 VVIGTHRVLSKDVEYKDLGLLIIDEEQRFGVTHKEKIKKLKNNVDVLTLTATPIPRTLHM 659
Query: 449 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 508
+L G RD S++ PP +R+PI+T++ + +E V A++ EL RGGQV+YV R+ + E
Sbjct: 660 SLIGIRDMSVLEEPPMDRMPIQTYVMEYDEETVREAVQRELKRGGQVYYVYNRVNDIAEV 719
Query: 509 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 568
L Q P V + AHGQ R+LE+ M +F G + +L+ T I+E+GLDI N NT+I+
Sbjct: 720 ASRLSQLLPDVQVGFAHGQMSERELEKVMYEFINGELDVLVSTTIIETGLDISNVNTMII 779
Query: 569 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 628
D ++GL+QLYQLRGR+GR+++ A+A+L Y S+L + A +RL+A+ E +LG GF++
Sbjct: 780 HDSDRYGLSQLYQLRGRIGRSNRTAYAFLMYRKNSILKETAEKRLSAIREFTDLGSGFKI 839
Query: 629 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDINI 688
A +D+ +RG G + G QQ G + VG DL+ +ML E++ + V+ +++ ID+++
Sbjct: 840 AMRDLELRGAGNLLGAQQHGHMQAVGYDLYCKMLNEAVKEAKGITVME-DFETT-IDLSM 897
Query: 689 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+ +P+ YI + +++ Q+ + M E L ++G+ P ++ LL +
Sbjct: 898 DAFIPNSYIANEFQKLDIYKRIAGIENQEEYEDM--LEELLDRFGEPPKAVMNLLAIATL 955
Query: 749 RRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLE 808
+ A + +I G V + + K+ I + E R L F ++ K L +
Sbjct: 956 KAAAHRAYLREIKQRGAQVKLTLHEEAKIDAAGIPILLKEYGRR-LQFRAEE-KPYFLFD 1013
Query: 809 LPREQLL 815
L E +L
Sbjct: 1014 LNGEGIL 1020
>gi|393198754|ref|YP_006460596.1| transcription-repair coupling factor [Solibacillus silvestris
StLB046]
gi|327438085|dbj|BAK14450.1| transcription-repair coupling factor [Solibacillus silvestris
StLB046]
Length = 1170
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 249/618 (40%), Positives = 380/618 (61%), Gaps = 13/618 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRMLYRYN 212
++SGDYVVH GIGK++GI+ V + +Y+ + Y D +PV Q ++ RY
Sbjct: 497 IKSGDYVVHVHHGIGKYIGIETLVVNGTHQ--DYLHVRYREDDKLYVPVDQIE-LIQRY- 552
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+P+ K P+ L KL T W++ K A+Q + DL++LY R +K + P +
Sbjct: 553 VPSGEKEPK-LHKLGGT-EWKKTHKKVSNAVQDIADDLIKLYAKREAEKGYAFSPDSDEQ 610
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
F A FPYE T DQ + +V++D+ ERE PMDRL+CGDVG+GKTEVA+RA F + G
Sbjct: 611 RGFEAAFPYEETEDQLRTIAEVKKDM-ERERPMDRLVCGDVGYGKTEVAIRAAFKAILDG 669
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ +S+RF Y I VGLLSRF+SK ++ E L +K G ++I++
Sbjct: 670 KQVAFLVPTTILAQQHYETISKRFEDYA-INVGLLSRFRSKKQQTETLKGLKEGTVDIVI 728
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L VVY +LGLL+VDEEQRFGV KEKI + +VDVLTL+ATPIPRTL++++
Sbjct: 729 GTHRILSKDVVYQDLGLLIVDEEQRFGVTHKEKIKQLRTNVDVLTLTATPIPRTLHMSMV 788
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T++ + V AI+ E+ RGGQVFY+ R++ + ++
Sbjct: 789 GVRDLSVIETPPQNRFPVQTYVMEHNGALVREAIEREMARGGQVFYLYNRVEDITRRVEE 848
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q P +A AHG+ +LE + F +G +L+ T I+E+G+DI N NT+IV D
Sbjct: 849 IQMLVPDARVAFAHGKMTEAKLESVILSFIEGEYDVLVTTTIIETGVDIPNVNTLIVHDA 908
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +
Sbjct: 909 DRMGLSQLYQLRGRVGRSNRIAYAYFMYERDKVLTEVAEQRLQAVKEFTELGSGFKIAMR 968
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + ++G DL+ +ML E++ + V + V+I ++++
Sbjct: 969 DLSIRGAGNLLGAQQHGFIDSIGFDLYSQMLEEAVEE-RRTGVKREEKQDVEIMLHVDAY 1027
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
+P YI ++M KA E I + + L+ ++G P E L++ ++
Sbjct: 1028 IPDAYIPDGYQKIQMYKRI-KAMEH-IEDYSEIIDELQDRFGDLPVETERLMRVARMKVW 1085
Query: 752 AADIGITKIYASGKMVGM 769
A + + I ++V +
Sbjct: 1086 AKEANVLSIKEKQQVVSI 1103
>gi|354559300|ref|ZP_08978550.1| transcription-repair coupling factor [Desulfitobacterium
metallireducens DSM 15288]
gi|353542889|gb|EHC12349.1| transcription-repair coupling factor [Desulfitobacterium
metallireducens DSM 15288]
Length = 1176
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 252/609 (41%), Positives = 379/609 (62%), Gaps = 27/609 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRY 211
L+ GDYVVH G+G+F+GI + V S V +Y ++YA + +P+ Q + +L +Y
Sbjct: 504 LKPGDYVVHVHHGVGRFLGIERLAV---SGVEKDYFTVKYAGEDRLYVPLDQLN-LLQKY 559
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
+ P+ L KL W++ K K K +I++M +DL++LY R + + P N
Sbjct: 560 LGSDAEALPK-LYKLGGND-WKKVKNKAKSSIKEMAIDLVKLYAEREAVQGFAFSPDNVW 617
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF +FPYE TPDQ K+ +V+ D+ R PMDRL+CGDVG+GKTEVALRA F V
Sbjct: 618 QQEFEEKFPYEETPDQLKSIQEVKHDMM-RLRPMDRLLCGDVGYGKTEVALRAAFKAVMD 676
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
KQ VL PT +LA+QHF+ ERF+ YP + + +LSRF++ E++ + +K G+++II
Sbjct: 677 SKQVAVLVPTTILAQQHFNTFRERFTGYP-VTIEMLSRFRTAKEQKVIIQGLKEGNIDII 735
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
VGTH L+ V + +LGLLV+DEEQRFGV KEK+ + K +VDVLTLSATPIPRTL+++L
Sbjct: 736 VGTHRLISDAVKFKDLGLLVIDEEQRFGVTHKEKLKTLKANVDVLTLSATPIPRTLHMSL 795
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+I TPP +R P++T+++ F + V AI+ E+ RGGQVF+V R++ +E+ +
Sbjct: 796 VGVRDMSVIETPPEDRYPVQTYVAEFRPDLVRDAIRREIQRGGQVFFVHNRVEDMEQVVH 855
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
FL Q P V IAHGQ LE+ M F + +L+CT I+E+GLD+ N NT+I+ +
Sbjct: 856 FLSQLVPEVRFGIAHGQMSETVLEKEMISFLEHENDVLVCTTIIETGLDMPNVNTLIIDE 915
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL QLYQLRGRVGR++++A+AY Y + +L++ A +RLAA+ E E G G ++A
Sbjct: 916 SDRLGLGQLYQLRGRVGRSNRKAYAYFLYKPQKVLTEVAEKRLAAIREFTEFGSGLRIAM 975
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G QQ G + VG +L+ +ML E++ ++ V S I++ ++
Sbjct: 976 RDLEIRGAGNLIGAQQHGQLAAVGFELYSQMLKEAVLEIKGEKVEDKIEPS--IEVQVDA 1033
Query: 691 RLPSEYI------NHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
+P EYI L + M++ E+ L + L ++G P +E LLK
Sbjct: 1034 FIPDEYIADRQVKASLYQRLVMISAEEE--------LSDMVDELIDRFGNPPREVENLLK 1085
Query: 745 KLYVRRMAA 753
+ ++ +AA
Sbjct: 1086 IIRIKWIAA 1094
>gi|415883948|ref|ZP_11545977.1| transcription-repair coupling factor [Bacillus methanolicus MGA3]
gi|387591743|gb|EIJ84060.1| transcription-repair coupling factor [Bacillus methanolicus MGA3]
Length = 1176
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 251/617 (40%), Positives = 385/617 (62%), Gaps = 22/617 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ YS LR GDYVVH GIGK++GI + + + V +Y+ I Y G KL PV+Q
Sbjct: 493 KIKSYSELRVGDYVVHVNHGIGKYLGI--ETLEINGVHKDYLHIRYQ-GNDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
++ +Y + +E K P+ + KL + W+R K K K ++Q + DL++LY R +
Sbjct: 550 D-LVQKY-VGSEGKEPK-IYKLGGSD-WKRVKNKVKSSVQNIADDLIKLYAEREAARGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P EF A FPY+ T DQ ++ +++RD+ ERE PMDRL+CGDVG+GKTEVALRA
Sbjct: 606 FSPDGEMQREFEAAFPYQETEDQLRSIHEIKRDM-ERERPMDRLLCGDVGYGKTEVALRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ L PT +LA+QH++ + ERF YP IK+GLLSRF+++ ++ E L +K
Sbjct: 665 AFKAIADGKQVAFLVPTTILAQQHYETMKERFQDYP-IKIGLLSRFRTRKQQTETLKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL VV+ +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIP
Sbjct: 724 DGTIDIVVGTHRLLSKDVVFRDLGLLIIDEEQRFGVAHKEKIKQLKTNIDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEYNGGLVKEAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E + + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKAEEISMLVPDARVVYAHGKMSENELESVMLTFIEGEADVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVYDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS-V 682
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML E++ + + P ++ +
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKEAIEERKGNN--EQPKRTQL 1021
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEP----YS 738
+ID+ ++ +P YI +EM + D + + E + ++G+ P Y
Sbjct: 1022 EIDLEVDAYIPDSYIADGHQKIEMYKRFRAISSLD--DIEELQEEMIDRFGEYPDEVAYL 1079
Query: 739 MEILLKKLYVRRMAADI 755
+I K+Y + +I
Sbjct: 1080 FQIAEMKVYGQLAGVEI 1096
>gi|160878272|ref|YP_001557240.1| transcription-repair coupling factor [Clostridium phytofermentans
ISDg]
gi|160426938|gb|ABX40501.1| transcription-repair coupling factor [Clostridium phytofermentans
ISDg]
Length = 1179
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 248/641 (38%), Positives = 389/641 (60%), Gaps = 13/641 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYVVH+ G+G + GI K +V K V +Y+ +EY G + ++ +Y
Sbjct: 503 LNIGDYVVHENHGLGIYRGIEKIEVDK---VSKDYIKLEYGGGGVLYILATGLDVIQKY- 558
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ ++P+ L+KL ++ W+ K K K A++++ +L+ELY R + + ++
Sbjct: 559 AGADARKPK-LNKL-NSVEWKNTKAKVKGAVKEIAKELVELYATRQAKAGHSFCEDTVWQ 616
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPYE T DQ +A D +RD+ E + MDRLICGDVG+GKTE+A+RA F +S G
Sbjct: 617 REFEEMFPYEETDDQLRAIDDTKRDM-ESKKIMDRLICGDVGYGKTEIAIRAAFKAISDG 675
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ + L PT +LA+QH++ S+R +P I V +L RF++ A++++ L+ +K G L+I++
Sbjct: 676 KQVVFLVPTTILAQQHYNTFSQRMMNFP-ISVDMLCRFKTPAQQKKTLENLKKGQLDILI 734
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + + NLGLL++DEEQRFGV KEKI K +DVLTL+ATPIPRTL+++L
Sbjct: 735 GTHRVLSKDIQFKNLGLLIIDEEQRFGVTHKEKIKQMKGDIDVLTLTATPIPRTLHMSLV 794
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ PP +RLPI+T + + E + AI EL RGGQV+YV R+ GL+E +
Sbjct: 795 GIRDMSVLEEPPVDRLPIQTFVLEHNDEIIREAINRELARGGQVYYVHNRVNGLDEITNT 854
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+ + P ++A AHGQ + QLE+ M +F G I +L+ T I+E+GLDI N NT+I+ +
Sbjct: 855 IARLVPDANVAFAHGQMHEHQLEKIMFEFINGEIDVLVSTTIIETGLDISNVNTMIIDNA 914
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
Q GL+QLYQLRGRVGR+++ + A+L Y LL + A +RL A++E ELG GF++A +
Sbjct: 915 DQLGLSQLYQLRGRVGRSNRTSFAFLMYKRDKLLKEVAEKRLQAIKEFTELGSGFKIAMR 974
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ+G + VG DL+ +ML +++ + + + ID++++
Sbjct: 975 DLEIRGAGNLLGAQQSGHMEAVGYDLYCKMLNDAVKGLKGEISDEDTFDT-SIDMDMDAF 1033
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
+PS YI + ++M ++ + MQ E + ++G P S+ LL ++ M
Sbjct: 1034 IPSTYIKNEMQKLDMYKRIAGIENEEEFMDMQ--EEMLDRFGDIPTSVNNLLNIALLKSM 1091
Query: 752 AADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRN 792
A + ++ + G V + K+ MI + +V N
Sbjct: 1092 AHQVYVSNLVQKGTEVKLSMYPKAKIKVEMIPELLLKVGNN 1132
>gi|150388007|ref|YP_001318056.1| transcription-repair coupling factor [Alkaliphilus metalliredigens
QYMF]
gi|149947869|gb|ABR46397.1| transcription-repair coupling factor [Alkaliphilus metalliredigens
QYMF]
Length = 1174
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 244/648 (37%), Positives = 398/648 (61%), Gaps = 17/648 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+ GD+VVH+ GIGK++GI+ V+ + +Y+ I Y+ G L V L +
Sbjct: 502 LQVGDHVVHEGHGIGKYIGIEELSVE---GIKKDYIKIRYS-GEDHLYVPTDQMNLIQKY 557
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+ ++ P+ L+KL W + K K K AI+ M +L++LY R + K + +
Sbjct: 558 IGSDKGSPK-LNKLGGV-EWVKTKGKVKKAIEDMAEELLKLYAERRRNKGHAFGNDGEWQ 615
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F FPYE TPDQ K+ +V+ D+ E+E MDRL+CGDVG+GKTEVA+RA F V
Sbjct: 616 KQFEDLFPYEETPDQLKSIEEVKADM-EQEGAMDRLLCGDVGYGKTEVAIRAGFKAVMDS 674
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QHF+ +RFS +P + V +LSRF++ A++++ L+ ++ G++++++
Sbjct: 675 KQVAFLVPTTILAQQHFNNFKQRFSGFP-VTVEMLSRFKTPAQQKQVLEGVRTGNVDVLI 733
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL + + +LGLL+VDEEQRFGVK KE++ K S+DVLTL+ATPIPRTL++++
Sbjct: 734 GTHRLLSKDIEFKDLGLLIVDEEQRFGVKHKERMKQMKESIDVLTLTATPIPRTLHMSMV 793
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I PP ER P++T++ +++ +I AI E+ RGGQ +YV R+ G+ +
Sbjct: 794 GIRDMSVIEDPPEERFPVQTYVIPYNESMIIDAITKEMARGGQTYYVYNRVDGIHQVARK 853
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQ+ P +A+ HGQ R+LE M + G +L+CT I+E+GLDI N NTI++ D
Sbjct: 854 LQELIPEARVAVGHGQMGERELEMLMMDYLDGVYDVLVCTTIIETGLDISNVNTIMIHDA 913
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+ ++ +AYL Y +LS+ A +RL A++E E G GF++A +
Sbjct: 914 DKLGLSQLYQLRGRVGRSSQQGYAYLMYQRDKILSEVAEKRLKAIKEFTEFGSGFKIAMR 973
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + ++G DL+ ++L E+++++ V Y+ +++N+N
Sbjct: 974 DLEIRGAGNLLGSQQHGHMASIGYDLYIKLLEETMAEMKGEVV--EKYEDTNMELNVNAY 1031
Query: 692 LPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+P +I + +E+ + A ++D++ + E + ++G P S+ LL Y++
Sbjct: 1032 IPERFIGSSTHKIEIYKKIASIRNQEDLYAI---EEEIEDRFGDIPMSVRNLLMISYIKA 1088
Query: 751 MAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG 798
+ I + I K + ++ ++K+ I S+ + R ++F G
Sbjct: 1089 LGNQIRVQTITQKEKEIRIQFTRSQKLKPENIGSVLHQYPRK-VSFHG 1135
>gi|116495978|ref|YP_807712.1| transcription-repair coupling factor [Lactobacillus casei ATCC 334]
gi|418003322|ref|ZP_12643410.1| transcription-repair coupling factor [Lactobacillus casei UCD174]
gi|116106128|gb|ABJ71270.1| transcription-repair coupling factor [Lactobacillus casei ATCC 334]
gi|410542528|gb|EKQ16973.1| transcription-repair coupling factor [Lactobacillus casei UCD174]
Length = 1174
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 384/614 (62%), Gaps = 14/614 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++ G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 495 LKPGDYVVHVNHGIGQYTGME-TLEVDG-VHRDYITIVYRNNDKLFIPVDQLN-LVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ + K P +++KL W++ K K I+ + +L++LY R +K + P +
Sbjct: 551 VSADGKTP-SVNKLGGA-EWQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F A+FPY TPDQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + G
Sbjct: 609 HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQA +L PT +LA+QHFD + ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+V
Sbjct: 668 KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T + + + AI+ E++RGGQVFY+ R++ +E +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P + AHGQ QLE + F GA +L+ T I+E+G+D+ NANT+I+++
Sbjct: 847 LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ A +RL A+++ ELG GF++A +
Sbjct: 907 DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + S +ID+ +
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP++Y+ +E+ +A + + +E L ++G P + LL +++R
Sbjct: 1025 LPTDYVADSRQKIELYKRIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRF 1082
Query: 752 AADIGITKIYASGK 765
A + + +G+
Sbjct: 1083 ADLAWVNHVTKAGQ 1096
>gi|418009048|ref|ZP_12648890.1| transcription-repair coupling factor [Lactobacillus casei UW4]
gi|410544799|gb|EKQ19114.1| transcription-repair coupling factor [Lactobacillus casei UW4]
Length = 1174
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 384/614 (62%), Gaps = 14/614 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++ G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 495 LKPGDYVVHVNHGIGQYTGME-TLEVDG-VHRDYITIVYRNNDKLFIPVDQLN-LVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ + K P +++KL W++ K K I+ + +L++LY R +K + P +
Sbjct: 551 VSADGKTP-SVNKLGGA-EWQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F A+FPY TPDQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + G
Sbjct: 609 HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQA +L PT +LA+QHFD + ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+V
Sbjct: 668 KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T + + + AI+ E++RGGQVFY+ R++ +E +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P + AHGQ QLE + F GA +L+ T I+E+G+D+ NANT+I+++
Sbjct: 847 LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ A +RL A+++ ELG GF++A +
Sbjct: 907 DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + S +ID+ +
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP++Y+ +E+ +A + + +E L ++G P + LL +++R
Sbjct: 1025 LPTDYVADSRQKIELYKRIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRF 1082
Query: 752 AADIGITKIYASGK 765
A + + +G+
Sbjct: 1083 ADLAWVNHVTKAGQ 1096
>gi|261403915|ref|YP_003240156.1| transcription-repair coupling factor [Paenibacillus sp. Y412MC10]
gi|261280378|gb|ACX62349.1| transcription-repair coupling factor [Paenibacillus sp. Y412MC10]
Length = 1175
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 249/622 (40%), Positives = 381/622 (61%), Gaps = 20/622 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH+ GIGK++GI + + + +Y+ I YA G +P++Q ++ +Y
Sbjct: 489 LKVGDYVVHQNHGIGKYMGIG--TLEINGIHKDYMHILYAGGDKLSVPIEQID-LIQKY- 544
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNP 269
+ +E K P+ + KL W R K K + ++Q + DL++LY R Q P Y
Sbjct: 545 VGSEDKEPK-VYKLG-GNEWTRVKNKVRSSVQDIADDLIKLYAER--QSAPGYGFEKDTS 600
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF FPY+ TPDQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 601 EQQEFEDMFPYDETPDQLRAITEIKKDM-EQNRPMDRLLCGDVGYGKTEVAVRAAFKAAI 659
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQ VL PT +LA+QH++ ERF+ YP I + +LSRF+S+ E+ E + +K G ++I
Sbjct: 660 EGKQVAVLVPTTILAQQHYETFRERFANYP-INIQVLSRFRSRKEQNETIKKVKQGSVDI 718
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH LL +V+ +LGLL+VDEEQRFGV KEK+ K ++DVLTL+ATPIPRTL+++
Sbjct: 719 LIGTHRLLSQDIVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNIDVLTLTATPIPRTLHMS 778
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
+ G RD S+I TPP R P++T++ S+ V AI+ EL RGGQV+Y+ R++G++E
Sbjct: 779 MLGVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIERELARGGQVYYLYNRVQGIQEMA 838
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+ P + + HGQ +LE+T+ F G +L+ T+I+E+G+DI N NT+IV
Sbjct: 839 AQISMLVPEARVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVH 898
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E ELG GF++A
Sbjct: 899 DADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIA 958
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK--SVQID 685
+D+ IRG G + G +Q G + +VG DL+ +ML E + KV S+P K + ID
Sbjct: 959 MRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIQKRKVSMLGEPSLPSKDWNTSID 1018
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ I+ LPS+YI +E+ + + D + + L ++G+ P ++ LL
Sbjct: 1019 LGIDAYLPSDYIYDSIQKIEIYKKVAVVSSIDESA--ELEDELLDRFGELPLAVSNLLAV 1076
Query: 746 LYVRRMAADIGITKIYASGKMV 767
++ GI I G V
Sbjct: 1077 SRLKVYGRTYGIDSITQRGDDV 1098
>gi|429756007|ref|ZP_19288622.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
324 str. F0483]
gi|429172210|gb|EKY13787.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
324 str. F0483]
Length = 1109
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 246/627 (39%), Positives = 372/627 (59%), Gaps = 22/627 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYV H GIGKF G+ K +V+ I+ + Y D A + +YN
Sbjct: 428 LEVGDYVTHIDHGIGKFAGLQKIEVEGKQQEAIKLI---YGDRDVLFVSIHALHKITKYN 484
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ +P + KL + AW+ K K K ++++ +L++LY R + K Y + +
Sbjct: 485 --GKDGKPPKIYKLG-SGAWKALKQKTKTRVKEIAFNLIQLYAKRKESKGYAYSHDSYMQ 541
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E A F YE TPDQ KA +V+ D+ E PMDRL+CGDVGFGKTEVA+RA F V G
Sbjct: 542 NELEASFLYEDTPDQSKATAEVKADM-ESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNG 600
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT VLA QHF S+R +P +++ L+RF++ EK+ L+ + +G L+II+
Sbjct: 601 KQVAVLVPTTVLAFQHFQTFSQRMKDFP-VRIDYLNRFRTAKEKKTILEELANGQLDIII 659
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH ++G +V Y +LGLL+VDEEQ+FGV K+K+ + K ++DVLTL+ATPIPRTL +L
Sbjct: 660 GTHQIVGEKVAYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLM 719
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD S+I+TPPP R PI + + FS+E + I+YE+ RGGQVF++ R++ ++E
Sbjct: 720 AARDLSVINTPPPNRYPIDSQVVPFSEEIIRDGIRYEIQRGGQVFFMHNRVENIQEVAGM 779
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P IAI HGQ ++LEETM F GA +L+ T I+E+GLD+ NANTI + +
Sbjct: 780 IQRLLPDARIAIGHGQMDGKKLEETMLAFMDGAYDVLVATTIIENGLDVPNANTIFINNA 839
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+ L+Q+RGRVGR++K+A Y P +SD A +R+ A+ + +LG G +A K
Sbjct: 840 HNFGLSDLHQMRGRVGRSNKKAFCYFITPPLVAMSDDARKRIEAIAQFSDLGSGLNIAMK 899
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS---------V 682
D+ IRG G + G +Q+G + +G + + ++L E++ ++ E+ + + S
Sbjct: 900 DLEIRGAGDLLGGEQSGFINELGFETYQKILQEAIVELKENEFSELYHTSEEDKTYLTDT 959
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
QID + P Y+N + + + NE ++ L Q+ +L ++GK P L
Sbjct: 960 QIDTDFELLFPDTYVNRVAERLNLYNELSNLPNEE--ALQQYQRNLTDRFGKLPPQAIDL 1017
Query: 743 LKKLYVRRMAADIGITK-IYASGKMVG 768
L + V+ +A +GI K + +GKM G
Sbjct: 1018 LNSVRVKWLATRMGIEKLVMKNGKMTG 1044
>gi|418000181|ref|ZP_12640377.1| transcription-repair coupling factor [Lactobacillus casei T71499]
gi|410537101|gb|EKQ11680.1| transcription-repair coupling factor [Lactobacillus casei T71499]
Length = 1174
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 384/614 (62%), Gaps = 14/614 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++ G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 495 LKPGDYVVHVNHGIGQYTGME-TLEVDG-VHRDYITIVYRNNDKLFIPVDQLN-LVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ + K P +++KL W++ K K I+ + +L++LY R +K + P +
Sbjct: 551 VSADGKTP-SVNKLGGA-EWQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F A+FPY TPDQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + G
Sbjct: 609 HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQA +L PT +LA+QHFD + ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+V
Sbjct: 668 KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T + + + AI+ E++RGGQVFY+ R++ +E +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P + AHGQ QLE + F GA +L+ T I+E+G+D+ NANT+I+++
Sbjct: 847 LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ A +RL A+++ ELG GF++A +
Sbjct: 907 DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + S +ID+ +
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP++Y+ +E+ +A + + +E L ++G P + LL +++R
Sbjct: 1025 LPTDYVADSRQKIELYKRIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRF 1082
Query: 752 AADIGITKIYASGK 765
A + + +G+
Sbjct: 1083 ADLAWVNHVTKAGQ 1096
>gi|304405853|ref|ZP_07387511.1| transcription-repair coupling factor [Paenibacillus curdlanolyticus
YK9]
gi|304345096|gb|EFM10932.1| transcription-repair coupling factor [Paenibacillus curdlanolyticus
YK9]
Length = 1177
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 247/615 (40%), Positives = 383/615 (62%), Gaps = 20/615 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH+ GIGK++GI + + +Y+ + YA G +P++Q M+ +Y
Sbjct: 488 LKVGDYVVHQNHGIGKYLGIG--TLEIGGIHKDYMHVMYAGGDKLSVPIEQID-MIQKY- 543
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP---KNP 269
+ +E K P+ + KL W R KTK + +++ + +L++LY R Q P + P
Sbjct: 544 VGSEEKEPK-VYKLGGNE-WARVKTKVRSSVKDIADELIKLYADR--QASPGFAFGQDTP 599
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF A FPY+ T DQ +A +++ D+ E PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 600 YQQEFEAMFPYDETRDQLRAIGEIKADM-EMSRPMDRLLCGDVGYGKTEVAVRAAFKAAI 658
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQ +L PT +LA+QHF+ ERFS YP V +LSRF+S+ E+ E + IK G ++I
Sbjct: 659 EGKQVAILVPTTILAQQHFETFRERFSGYP-FNVQVLSRFRSRKEQNETMKGIKAGTVDI 717
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH LL VV+ +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL+++
Sbjct: 718 VIGTHRLLSQDVVFKDLGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMS 777
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
+ G RD S+I TPP R P++T++ +S V +++ EL RGGQV+Y+ R++G+ +
Sbjct: 778 MLGVRDLSVIETPPENRFPVQTYVLEYSAALVRESVERELARGGQVYYLYNRVQGIHQMA 837
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
D ++ P +A+ HGQ ++LE+T+ F G +L+ T+I+E+G+DI N NT+IV
Sbjct: 838 DQIKALVPDARVAVGHGQMSEQELEKTILDFLDGESDVLVSTSIIETGVDIPNVNTLIVH 897
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E ELG GF++A
Sbjct: 898 DADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIA 957
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYK----SVQID 685
+D+ IRG G + G +Q G + +VG DL+ +ML + ++ + P + + ID
Sbjct: 958 MRDLAIRGAGNLLGAEQHGFIASVGFDLYSQMLADEVAARKAQLDGAAPVEERKVATVID 1017
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
++++ LPS+YI +E+ + AA + I + L ++G P ++E LL
Sbjct: 1018 LSLDAYLPSDYIYDSIQKIEIYKKV--AAIRQIEETEDLRDELVDRFGDLPLAVENLLAV 1075
Query: 746 LYVRRMAADIGITKI 760
++ A+ GI +I
Sbjct: 1076 ARLKAYGAEYGIEQI 1090
>gi|407979088|ref|ZP_11159910.1| transcription-repair coupling factor [Bacillus sp. HYC-10]
gi|407414304|gb|EKF35957.1| transcription-repair coupling factor [Bacillus sp. HYC-10]
Length = 1177
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 251/644 (38%), Positives = 393/644 (61%), Gaps = 27/644 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQVGDYVVHINHGIGKYLGI--ETLEIGGIHKDYLNIHYQ-GSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLGGSD-WKRVKKKVESSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + +F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQRQFESAFPYQETEDQIRSIHEIKQDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ +L PT +LA+QHFD + +RF YP +K+ LSRF+++ E E L +K
Sbjct: 665 AFKAIADGKQVALLVPTTILAQQHFDTIMDRFQDYP-VKIAQLSRFRTRKETTETLKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G +++++GTH LL +VY +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIP
Sbjct: 724 NGTIDMVIGTHRLLSKDIVYKDLGLLIIDEEQRFGVTHKEKIKQMKANIDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P ++ AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVHDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + ++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGDTTAQEKFEP-E 1022
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ I+ +P YI+ + +EM + A I + E + ++G+ P + L
Sbjct: 1023 IDLQIDAYIPDSYISDGKQKIEMYKQFR--AISSIEERKELQEEMIDRFGEYPQEVADLF 1080
Query: 744 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTS 787
I K+YA + V + M K + ++ +D S
Sbjct: 1081 T----------IATMKVYAVQERVEL-IKMEKGIVRLTLDEKAS 1113
>gi|418011916|ref|ZP_12651664.1| transcription-repair coupling factor [Lactobacillus casei Lc-10]
gi|410551415|gb|EKQ25478.1| transcription-repair coupling factor [Lactobacillus casei Lc-10]
Length = 1174
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 384/614 (62%), Gaps = 14/614 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++ G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 495 LKPGDYVVHVNHGIGQYTGME-TLEVDG-VHRDYITIVYRNNDKLCIPVDQLN-LVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ + K P +++KL W++ K K I+ + +L++LY R +K + P +
Sbjct: 551 VSADGKTP-SVNKLGGA-EWQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F A+FPY TPDQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + G
Sbjct: 609 HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQA +L PT +LA+QHFD + ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+V
Sbjct: 668 KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T + + + AI+ E++RGGQVFY+ R++ +E +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P + AHGQ QLE + F GA +L+ T I+E+G+D+ NANT+I+++
Sbjct: 847 LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ A +RL A+++ ELG GF++A +
Sbjct: 907 DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + S +ID+ +
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP++Y+ +E+ +A + + +E L ++G P + LL +++R
Sbjct: 1025 LPTDYVADSRQKIELYKRIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRF 1082
Query: 752 AADIGITKIYASGK 765
A + + +G+
Sbjct: 1083 ADLAWVNHVTKAGQ 1096
>gi|169825685|ref|YP_001695843.1| transcription-repair coupling factor [Lysinibacillus sphaericus
C3-41]
gi|168990173|gb|ACA37713.1| Transcription-repair coupling factor [Lysinibacillus sphaericus
C3-41]
Length = 1169
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 248/616 (40%), Positives = 380/616 (61%), Gaps = 13/616 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRMLYRYN 212
++ GDYVVH GIGK++G++ ++ + T +Y+ I Y AD +PV+Q ++ +Y
Sbjct: 497 IKPGDYVVHVHHGIGKYIGVE-TLEVNGTHK-DYLHIRYRADDKLYVPVEQID-LIQKY- 552
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E + P+ L KL W++ K K A+Q + DL++LY R +K + P N
Sbjct: 553 VASEDREPK-LHKLG-GAEWKKAKAKVSSAVQDIADDLIKLYAKREAEKGHAFTPDNDDQ 610
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
F A F YE T DQ ++ ++V+RD+ ERE PMDRL+CGDVG+GKTEVA+RA F + G
Sbjct: 611 RNFEAMFAYEETEDQLRSIVEVKRDM-ERERPMDRLVCGDVGYGKTEVAIRAAFKAIQDG 669
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF + I VGLLSRF+SK E+ L +K G ++I++
Sbjct: 670 KQVAFLVPTTILAQQHYETIRERFQDFA-INVGLLSRFRSKKEQTATLKGLKEGQVDIVI 728
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L +++ +LGLL+VDEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++
Sbjct: 729 GTHRILSKDLIFQDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIPRTLHMSMV 788
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T++ S V AI+ E+ RGGQVFY+ R++ + ++
Sbjct: 789 GVRDLSVIETPPANRFPVQTYVMEHSGALVREAIEREMARGGQVFYLYNRVEDMARKVEE 848
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q P I AHG+ +LE + F +G +L+ T I+E+G+DI N NT+IV D
Sbjct: 849 IQVLVPEARIGHAHGKMSETELESVILSFLEGDYDVLVTTTIIETGVDIPNVNTLIVHDA 908
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GLAQLYQLRGRVGR+++ A+AY Y +L+D A +RL A++E ELG GF++A +
Sbjct: 909 DRMGLAQLYQLRGRVGRSNRVAYAYFMYQRDKVLTDVAEQRLQAIKEFTELGSGFKIAMR 968
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + +VG DL+ +ML E++++ + V ++I ++++
Sbjct: 969 DLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLQEAIAE-RQTGVKKEEKPEIEILLSVDAY 1027
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
+P YI ++M KA +Q + + E L ++G P E LL+ ++
Sbjct: 1028 IPDVYIPDGYQKIQMYKRI-KAMDQ-VEEYGEIMEELEDRFGDLPIETERLLRVARMKVW 1085
Query: 752 AADIGITKIYASGKMV 767
G+ + K++
Sbjct: 1086 GLGAGVISVKEKQKLI 1101
>gi|452823129|gb|EME30142.1| transcription-repair coupling factor (superfamily II helicase)
[Galdieria sulphuraria]
Length = 833
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 256/693 (36%), Positives = 402/693 (58%), Gaps = 22/693 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS---RMLY 209
S+ GDYVVH K G+G F G ++ KD+T+ EY ++Y DG +PV++A+ R
Sbjct: 119 SILPGDYVVHMKFGVGIFKGTEYK-SKDNTIYREYFIVQYRDGKLNIPVERANEIHRFRS 177
Query: 210 RYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNP 269
R ++ + R L L +++WE+RK K V+I K+ VD+++LY R +QKRP YP +
Sbjct: 178 RESVAVQRVRAPRLDSLRKSSSWEKRKKKALVSIDKLAVDIVKLYAIRAEQKRPRYPADD 237
Query: 270 AI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328
+ A F FP+E TPDQ D+ RD+ ER++PMDRL+CGDVGFGKTEVA++AIF
Sbjct: 238 ILQANFIKSFPFELTPDQLACIEDIRRDMCERDSPMDRLVCGDVGFGKTEVAMQAIFRAF 297
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR-FQSKAEKEEHLDM-IKHGH 386
AGKQ + PT VLA QH+ + R + +KV LLSR F + ++ L + GH
Sbjct: 298 RAGKQVAFICPTTVLASQHYRTLQNRMEDF-GVKVALLSRHFPKRMKERRQLQQDLSLGH 356
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
++++VGT SLL +++ + L LL++DEEQ GV QKE++ + S+DVLTLSATPIPRTL
Sbjct: 357 IDVLVGTQSLLSNKLEFAKLSLLIIDEEQWLGVNQKERLKTISTSIDVLTLSATPIPRTL 416
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
++A+ RD SLI TPP RL ++ + AF V + I EL R GQV+ V PRI ++
Sbjct: 417 HMAVGNIRDMSLILTPPKGRLAVENFVLAFDDPLVDNHIGKELARNGQVYIVCPRIADID 476
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
++Q FP I A G + +E+ + F+ ILI T I+E+G+DI +ANTI
Sbjct: 477 RIGQLIKQKFPHYRILYADGTM--KDVEDRILSFSFHEYDILISTCIIEAGVDIPDANTI 534
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
IV FGL+QLYQ+RGRVGR+ +A A + K ++++A ERL ALE+ LG G+
Sbjct: 535 IVYRATSFGLSQLYQIRGRVGRSKVQAFAIFTFDPKVEMTNEATERLKALEQLSSLGSGY 594
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 686
++A +D+ IRG G++ G +Q+G+VG++G +++ +L +L ++ V V + ++++
Sbjct: 595 EVANRDLEIRGPGSLIGIEQSGEVGSIGFEMYMNLLKNTLDRLRGKLVPVV--EDCEVNV 652
Query: 687 NINPRLPSEYINHLENPM---EMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+ +P YI M + + E D W + + YG+ P S+ L
Sbjct: 653 TLPSYIPESYIKVESERMAAYRTLGQVTNTKEMD-W----LENTWKYNYGECPSSVSCLF 707
Query: 744 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKA 803
+ ++ +A +GI+ I V + M K + + ++ V N+ + + +++
Sbjct: 708 QVSRIQLLARKVGISAICIEEDFVQVVVEMEKLTWDCLCATVFHSVENNNNSTHHEYLRS 767
Query: 804 ELLL--ELPREQLLNWIFQCLAELYASLPALIK 834
+L+ E R+ L N I + L +++ A +K
Sbjct: 768 FVLVREEKERDPLENNIIAIRSVLRSTMIATVK 800
>gi|392404549|ref|YP_006441161.1| transcription-repair coupling factor [Turneriella parva DSM 21527]
gi|390612503|gb|AFM13655.1| transcription-repair coupling factor [Turneriella parva DSM 21527]
Length = 1124
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 264/708 (37%), Positives = 412/708 (58%), Gaps = 30/708 (4%)
Query: 139 YNGAGGFSYKVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGM 196
Y G S +D Y+ L+ GDYVVH GIG+F +K VQ + IE F + D
Sbjct: 432 YAGDKSISRILDSYTDLKEGDYVVHVNYGIGRFSALKRMRVQNNERDFIELRFAD--DDK 489
Query: 197 AKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLH 256
+P+ Q + ++++Y T+ PR L L ++W + + + K + + +L+ELY H
Sbjct: 490 LFVPLDQLN-LVHKYI--GSTENPR-LDHLGKKSSWAKTRARVKRLVDSIAEELLELYAH 545
Query: 257 RLKQKRPPYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFG 315
R+ QK +P + + +F A FP+ T Q + ++ D+ E E PMDRL+CGDVGFG
Sbjct: 546 RVNQKGFAFPPDSSFQHDFEAAFPFTETEHQLETIYAIKADM-ESEKPMDRLVCGDVGFG 604
Query: 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 375
KTEVA+RA F AGKQ VL PT +LA QH+ S+RF+ YP +++ +SRF+S +E
Sbjct: 605 KTEVAIRAAFKAAMAGKQVAVLCPTTILAFQHYRSFSKRFADYP-VRIDYISRFRSPSEV 663
Query: 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVL 435
E + G ++II+GTH+L V Y +LGL+++DEEQRFGV KEK+ + ++D L
Sbjct: 664 AEIKARLADGKIDIIIGTHALFADDVRYKSLGLMIIDEEQRFGVTHKEKLRQMRTNLDCL 723
Query: 436 TLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQV 495
L+ATPIPRTL+++L+G RD S+I TPP +R I+TH+ A ++E + A K+EL+RGGQV
Sbjct: 724 ALTATPIPRTLHMSLSGIRDLSIIETPPADRRKIETHVIAENEELLRLAFKHELERGGQV 783
Query: 496 FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555
+ + ++K +EE L+ P IA+ HGQ +EE M F Q A IL+ T I+E
Sbjct: 784 YVLHNKVKTIEEQAIRLRALAPQARIAVLHGQMPETAIEEVMVDFYQHAYDILVSTTIIE 843
Query: 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL--LSDQALERL 613
SG+DI N NT+IV +FGL+QLYQL+GRVGR+D++A+AY FYP ++ LS A RL
Sbjct: 844 SGIDIPNCNTLIVLGAHEFGLSQLYQLKGRVGRSDRQAYAYFFYPSPTMHTLSGDAERRL 903
Query: 614 AALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHC 673
L E +LG GF++A KD+ IRG G + G++Q+G++ +G +L+ +ML + ++++
Sbjct: 904 EVLAEYDDLGSGFRIAMKDLEIRGAGNLLGKEQSGEIMEIGFELYSQMLNDKVNELKGKA 963
Query: 674 VISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYG 733
V + + S I + + P EYI ME AA D + + E+L +YG
Sbjct: 964 VANDDFTSA-IMLPCDWYFPDEYIADTRAKMEFYKSLSAAAGLDEF--HEIREALVDRYG 1020
Query: 734 KEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNS 793
K P ++E++L +R++A + + ++ S K +KT F + D ++
Sbjct: 1021 KPPETVELMLLLEEIRQLAYMLRLERVAISPKTDDLKTPSEMPYFIVAPDHRLDMAKVSA 1080
Query: 794 LTFEGDQIKAE------LLLELPREQLLNWIFQCLAELYASLPALIKY 835
L ++K + + L++P++ L + + L A++KY
Sbjct: 1081 LLTRDKRVKLDTADPKRINLDIPQQPQLAF--------FRELSAILKY 1120
>gi|336394542|ref|ZP_08575941.1| transcription-repair coupling factor [Lactobacillus farciminis KCTC
3681]
Length = 1174
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 232/560 (41%), Positives = 364/560 (65%), Gaps = 22/560 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIE-----YVFIEY-ADGMAKLPVKQASRM 207
L+ GDYVVH GIGKF+G++ T+ ++ Y+ IEY DG +PV Q M
Sbjct: 495 LKPGDYVVHVNHGIGKFIGMQ-------TMEVDGKHQDYITIEYRDDGRLFIPVTQLD-M 546
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK 267
+ +Y + E K P+ ++KL W++ K K + I+ + DL++LY R +K +PK
Sbjct: 547 VQKY-VSAEGKSPK-INKLG-GNEWQKTKRKVQSNIEDIADDLIDLYAKREAEKGFAFPK 603
Query: 268 NPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
+ ++ +F FPY TPDQ ++ +++RD+ E+ PMDRL+ GDVGFGKTEVALRA F
Sbjct: 604 DDSMQHDFDNAFPYPETPDQLRSIDEIKRDM-EKPHPMDRLLVGDVGFGKTEVALRAAFK 662
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
V AGKQ + LAPT +L +QH++ + ERF +P + +G+LSRFQ++ + +E ++ + G
Sbjct: 663 AVEAGKQVVFLAPTTLLVQQHYETMKERFEGFP-VNIGILSRFQTRKQSKETIEQLADGQ 721
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
L+I+VGTH LL V ++++GLL++DEEQRFGVK KEKI K +VDVLTL+ATPIPRTL
Sbjct: 722 LDIVVGTHRLLSKDVKFSDIGLLIIDEEQRFGVKHKEKIKQLKANVDVLTLTATPIPRTL 781
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
+++ G RD SLI T P R P++T++ + E + AIK E+ RGGQVFY+ R++ ++
Sbjct: 782 NMSMLGVRDLSLIETAPSNRYPVQTYVMEQNYEVIAGAIKREMARGGQVFYLHNRVEDMD 841
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
+ + LQ P IA AHG+ Q+E + + G +L+ T I+E+G+D+ N NT+
Sbjct: 842 QVAEQLQALVPDARIATAHGRMNETQMEGVIADYLNGEYDVLVTTTIIETGVDMPNTNTL 901
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
IV++ ++GL+QLYQ+RGRVGR+ + A+AYL Y +L++ +RL A++ ELG GF
Sbjct: 902 IVENADRYGLSQLYQIRGRVGRSSRVAYAYLMYRPNKVLTEVGEQRLEAIKNFTELGSGF 961
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 686
++A +D+ IRG G + G+QQ G + +VG DL+ +ML ++++K H + ++++
Sbjct: 962 KIAMRDLSIRGAGNLLGKQQHGFIDSVGFDLYTQMLNDAVAKKRGHT--KAEKTNSEVNL 1019
Query: 687 NINPRLPSEYINHLENPMEM 706
++ LP++YI+ +E+
Sbjct: 1020 SLEAYLPNDYISDQRQKVEL 1039
>gi|387819820|ref|YP_005680167.1| transcription-repair coupling factor [Clostridium botulinum H04402
065]
gi|322807864|emb|CBZ05439.1| transcription-repair coupling factor [Clostridium botulinum H04402
065]
Length = 1168
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 251/676 (37%), Positives = 409/676 (60%), Gaps = 31/676 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+ GD+VVH GIG F GIK ++Q + +E ++ ++D +PV+Q M+ RY
Sbjct: 501 LKPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIY--HSDDKLYVPVEQLD-MVQRY- 556
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+ +E K+P+ +SKL ++ W + K K K +I+++ DL++LY R K Y +
Sbjct: 557 IGSEGKKPK-VSKLG-SSEWTKTKNKVKKSIEEIAEDLVKLYAIRASLKGYKYSDDTVWQ 614
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F +FPYE TPDQ A D+++D+ E PMDRL+CGDVG+GKTEVA+RA F V G
Sbjct: 615 KQFEEEFPYEETPDQLLAIEDIKKDM-ESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDG 673
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ +RFS +P I V ++SRF++ +E++ + IK G+++I++
Sbjct: 674 KQVAFLVPTTILAQQHYNNFKQRFSDFP-ITVDVISRFRTLSEQKATIKSIKEGNVDILI 732
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + + +LGLL++DEEQRFGVK KEK+ + K +VDVLTLSATPIPRTL+++L
Sbjct: 733 GTHRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLV 792
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP ER P++T++ ++ + + +I E+ RGGQ+++V R++ + E +
Sbjct: 793 GVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVYNRVESIHEMASY 852
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+ + P + IAHGQ ++LE + F + ILI T I+E+G+DI+N NT+I+ D
Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDA 912
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR ++ A+ YL Y +L++ A +RL A+++ ELG GF++A K
Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDIN 687
D+ IRG G + G Q G + ++G DL+ ML +++ +D+ V +++
Sbjct: 973 DLEIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPV------ETSVELK 1026
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
I+ +P+ YI +E+ + ++ + M E L ++ P S+ L+ Y
Sbjct: 1027 IDAYIPNTYIKDETQKIEVYKKIASIDSKEEF--MDIEEELEDRFSDIPISVYNLMNISY 1084
Query: 748 VRRMAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEV-----HRNSLTFEG 798
+R + + I +I V K+++ +K+ K+++D + EV + ++ +
Sbjct: 1085 IRSLGKKVDIEEIKEISNEVVFQFEDKSSLREKIVKIIMDKYSKEVAFKLNEKPAIGYNI 1144
Query: 799 DQIKAELLLELPREQL 814
IK E LL + R L
Sbjct: 1145 KNIKKEQLLPIIRNFL 1160
>gi|386756634|ref|YP_006229850.1| transcription-repair coupling factor [Bacillus sp. JS]
gi|384929916|gb|AFI26594.1| transcription-repair coupling factor [Bacillus sp. JS]
Length = 1177
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 246/611 (40%), Positives = 382/611 (62%), Gaps = 20/611 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQIGDYVVHINHGIGKYLGI--ETLEINGIHKDYLNIHY-QGSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLGGS-EWKRVKKKVETSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + EF + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQREFESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIGDGKQVALLVPTTILAQQHYETIKERFQDYP-INIGLLSRFRTRKEANETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVTYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + + +++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFET-E 1022
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ ++ +P YI + ++M A I + + + ++G P +E L
Sbjct: 1023 IDVELDAYIPETYIQDGKQKIDMYKRFRSVA--TIEEKNELQDEMIDRFGNYPKEVEYLF 1080
Query: 744 K----KLYVRR 750
K+Y R+
Sbjct: 1081 TVAEMKVYARQ 1091
>gi|417990833|ref|ZP_12631295.1| transcription-repair coupling factor [Lactobacillus casei A2-362]
gi|417994165|ref|ZP_12634499.1| transcription-repair coupling factor [Lactobacillus casei CRF28]
gi|410530481|gb|EKQ05254.1| transcription-repair coupling factor [Lactobacillus casei CRF28]
gi|410533492|gb|EKQ08170.1| transcription-repair coupling factor [Lactobacillus casei A2-362]
Length = 1174
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 384/614 (62%), Gaps = 14/614 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++ G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 495 LKPGDYVVHVNHGIGQYTGME-TLEVDG-VHRDYITIVYRNNDKLFIPVDQLN-LVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ + K P +++KL W++ K K I+ + +L++LY R +K + P +
Sbjct: 551 VSADGKTP-SVNKLGGA-EWQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F A+FPY TPDQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + G
Sbjct: 609 HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQA +L PT +LA+QHFD + ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+V
Sbjct: 668 KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T + + + AI+ E++RGGQVFY+ R++ +E +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P + AHGQ QLE + F GA +L+ T I+E+G+D+ NANT+I+++
Sbjct: 847 LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ A +RL A+++ ELG GF++A +
Sbjct: 907 DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + S +ID+ +
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP++Y+ +E+ +A + + +E L ++G P + LL +++R
Sbjct: 1025 LPTDYVADSRQKIELYKRIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRF 1082
Query: 752 AADIGITKIYASGK 765
A + + +G+
Sbjct: 1083 ADLAWVNHVTKAGQ 1096
>gi|417997275|ref|ZP_12637534.1| transcription-repair coupling factor [Lactobacillus casei M36]
gi|418014193|ref|ZP_12653804.1| transcription-repair coupling factor [Lactobacillus casei Lpc-37]
gi|410533035|gb|EKQ07723.1| transcription-repair coupling factor [Lactobacillus casei M36]
gi|410554370|gb|EKQ28347.1| transcription-repair coupling factor [Lactobacillus casei Lpc-37]
Length = 1174
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 384/614 (62%), Gaps = 14/614 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++ G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 495 LKPGDYVVHVNHGIGQYTGME-TLEVDG-VHRDYITIVYRNNDKLFIPVDQLN-LVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ + K P +++KL W++ K K I+ + +L++LY R +K + P +
Sbjct: 551 VSADGKTP-SVNKLGGA-EWQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F A+FPY TPDQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + G
Sbjct: 609 HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQA +L PT +LA+QHFD + ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+V
Sbjct: 668 KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T + + + AI+ E++RGGQVFY+ R++ +E +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P + AHGQ QLE + F GA +L+ T I+E+G+D+ NANT+I+++
Sbjct: 847 LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ A +RL A+++ ELG GF++A +
Sbjct: 907 DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + S +ID+ +
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP++Y+ +E+ +A + + +E L ++G P + LL +++R
Sbjct: 1025 LPTDYVADSRQKIELYKRIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRF 1082
Query: 752 AADIGITKIYASGK 765
A + + +G+
Sbjct: 1083 ADLAWVNHVTKAGQ 1096
>gi|417981717|ref|ZP_12622381.1| transcription-repair coupling factor [Lactobacillus casei 12A]
gi|417984538|ref|ZP_12625158.1| transcription-repair coupling factor [Lactobacillus casei 21/1]
gi|410521120|gb|EKP96085.1| transcription-repair coupling factor [Lactobacillus casei 12A]
gi|410525096|gb|EKQ00003.1| transcription-repair coupling factor [Lactobacillus casei 21/1]
Length = 1174
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 384/614 (62%), Gaps = 14/614 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++ G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 495 LKPGDYVVHVNHGIGQYTGME-TLEVDG-VHRDYITIVYRNNDKLFIPVDQLN-LVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ + K P +++KL W++ K K I+ + +L++LY R +K + P +
Sbjct: 551 VSADGKTP-SVNKLGGA-EWQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F A+FPY TPDQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + G
Sbjct: 609 HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQA +L PT +LA+QHFD + ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+V
Sbjct: 668 KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T + + + AI+ E++RGGQVFY+ R++ +E +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P + AHGQ QLE + F GA +L+ T I+E+G+D+ NANT+I+++
Sbjct: 847 LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ A +RL A+++ ELG GF++A +
Sbjct: 907 DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + S +ID+ +
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP++Y+ +E+ +A + + +E L ++G P + LL +++R
Sbjct: 1025 LPTDYVADSRQKIELYKRIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRF 1082
Query: 752 AADIGITKIYASGK 765
A + + +G+
Sbjct: 1083 ADLAWVNHVTKAGQ 1096
>gi|239630377|ref|ZP_04673408.1| transcription-repair coupling factor [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|239526660|gb|EEQ65661.1| transcription-repair coupling factor [Lactobacillus paracasei subsp.
paracasei 8700:2]
Length = 1174
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 384/614 (62%), Gaps = 14/614 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++ G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 495 LKPGDYVVHVNHGIGQYTGME-TLEVDG-VHRDYITIVYRNNDKLFIPVDQLN-LVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ + K P +++KL W++ K K I+ + +L++LY R +K + P +
Sbjct: 551 VSADGKTP-SVNKLGGA-EWQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F A+FPY TPDQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + G
Sbjct: 609 HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQA +L PT +LA+QHFD + ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+V
Sbjct: 668 KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T + + + AI+ E++RGGQVFY+ R++ +E +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P + AHGQ QLE + F GA +L+ T I+E+G+D+ NANT+I+++
Sbjct: 847 LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ A +RL A+++ ELG GF++A +
Sbjct: 907 DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + S +ID+ +
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RSGIKSAEKTDAEIDLGLEAY 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP++Y+ +E+ +A + + +E L ++G P + LL +++R
Sbjct: 1025 LPTDYVADSRQKIELYKRIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRF 1082
Query: 752 AADIGITKIYASGK 765
A + + +G+
Sbjct: 1083 ADLAWVNHVTKAGQ 1096
>gi|301067528|ref|YP_003789551.1| transcription-repair coupling factor (superfamily II helicase)
[Lactobacillus casei str. Zhang]
gi|300439935|gb|ADK19701.1| Transcription-repair coupling factor (superfamily II helicase)
[Lactobacillus casei str. Zhang]
Length = 1174
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 384/614 (62%), Gaps = 14/614 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++ G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 495 LKPGDYVVHVNHGIGQYTGME-TLEVDG-VHRDYITIVYRNNDKLFIPVDQLN-LVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ + K P +++KL W++ K K I+ + +L++LY R +K + P +
Sbjct: 551 VSADGKTP-SVNKLGGA-EWQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F A+FPY TPDQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + G
Sbjct: 609 HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQA +L PT +LA+QHFD + ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+V
Sbjct: 668 KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T + + + AI+ E++RGGQVFY+ R++ +E +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P + AHGQ QLE + F GA +L+ T I+E+G+D+ NANT+I+++
Sbjct: 847 LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ A +RL A+++ ELG GF++A +
Sbjct: 907 DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + S +ID+ +
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP++Y+ +E+ +A + + +E L ++G P + LL +++R
Sbjct: 1025 LPTDYVADSRQKIELYKRIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRF 1082
Query: 752 AADIGITKIYASGK 765
A + + +G+
Sbjct: 1083 ADLAWVNHVTKAGQ 1096
>gi|402310378|ref|ZP_10829344.1| transcription-repair coupling factor [Eubacterium sp. AS15]
gi|400368830|gb|EJP21837.1| transcription-repair coupling factor [Eubacterium sp. AS15]
Length = 1128
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 250/630 (39%), Positives = 397/630 (63%), Gaps = 26/630 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GD VVH+ GIGKF+GI + +++++V +Y+ I Y DG +P+ Q + + RY
Sbjct: 492 LKIGDIVVHEVYGIGKFLGI--EQKENNSVKKDYIKISYKDGDTIYVPISQMDK-VQRY- 547
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ N + + +L+KL ++ W+++K K K A++++ L++LY R QK + K+
Sbjct: 548 IGNASDKV-SLTKLG-SSQWKKQKAKAKKAVEEIARYLVDLYAQRENQKGYAFSKDTVWQ 605
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF + F +E T DQ ++ +V++D+ E PMDRL+CGDVG+GKTEVA+R IF
Sbjct: 606 REFESLFAFEETQDQIRSIKEVKKDM-ENIKPMDRLLCGDVGYGKTEVAIRGIFKACMDS 664
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH+ VSERF +P +KV +LSRF+++ E+ E L+ +K G +++I+
Sbjct: 665 KQVAFLVPTTILAQQHYKTVSERFENFP-LKVEVLSRFKTRKEQNEILEKLKLGEVDVII 723
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L VV+ +LGLLV+DEEQRFGVK KEKI S K ++DVLTL+ATPIPRTL ++L+
Sbjct: 724 GTHRILSKDVVFKDLGLLVIDEEQRFGVKDKEKIKSLKTNIDVLTLTATPIPRTLNMSLS 783
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ PP +RL + T+++ + ++ AI+ E+ RGGQVF+V ++ +++
Sbjct: 784 GIRDMSVLEEPPNDRLSVITYVTEAREGIIMDAIEREISRGGQVFFVYNSVEDIDKMATN 843
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+++ P V +A+AHGQ LE+ M + + +L+CT I+E+G+DI NANTIIV +
Sbjct: 844 IKKLVPNVRLAVAHGQMQPTVLEDIMMDYLEKKYDLLLCTTIIETGMDISNANTIIVYNA 903
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+ ++A+AYL Y +L++ A +RL A+ + E G GF++A
Sbjct: 904 DKMGLSQLYQLRGRVGRSSRQAYAYLMYEKDKVLTEIAQKRLKAIRDFTEFGSGFKVAMM 963
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV-----DEHCVISVPYKSVQIDI 686
D+ +RG G + GE Q+G + VG DL+ +ML +S +++ DE + V I
Sbjct: 964 DLELRGSGNLLGETQSGHIEEVGYDLYIKMLNDSFNRLKGNIQDEKVMTEVY-------I 1016
Query: 687 NINPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+N +P YI ME+ + A ++E+D + + E ++ P+ +E LLK
Sbjct: 1017 TVNAYIPDTYIEDEMQKMEIYKKIASISSEEDYFDVQAEIED---RFSDIPFQVENLLKI 1073
Query: 746 LYVRRMAADIGITKIYASGKMVGMKTNMNK 775
+R IGI KI K+V +++ +K
Sbjct: 1074 ATIRSYGEKIGIEKITQKNKIVIYESSKDK 1103
>gi|46580312|ref|YP_011120.1| transcription-repair coupling factor [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449729|gb|AAS96379.1| transcription-repair coupling factor [Desulfovibrio vulgaris str.
Hildenborough]
Length = 1160
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 260/607 (42%), Positives = 373/607 (61%), Gaps = 28/607 (4%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYR 210
L+ GD +VH+ G+ +FVG+ + D+ V +++ +EYA D LPV + S ++ R
Sbjct: 488 GLQPGDLLVHRDYGVARFVGLERMDL---GGVGNDFLLLEYAGDDRLYLPVDRLS-LVQR 543
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNP 269
+ ++TK +L +L AW+ K K + AI+K+ DL+E+Y +R K Y P
Sbjct: 544 FKGADDTKP--SLDRLG-GGAWQSSKDKARKAIEKIAADLVEMYAYRKIAKGYTYGPIGE 600
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF A F +E TPDQ +A DV D+ ++ PMDRL+CGDVGFGKTEVALRA F S
Sbjct: 601 LYREFEASFGFEETPDQARAIQDVLEDM-DKPVPMDRLVCGDVGFGKTEVALRAAFRAAS 659
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
G+Q +L PT VLA+QH+ R + +P + VG+LSRF SK ++ E L GH++I
Sbjct: 660 EGRQVALLCPTTVLAEQHYQTFRSRLAGFP-VNVGMLSRFVSKQKQTEVLAAAAKGHVDI 718
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH LL V NLGLLV+DEEQRFGV+ KEK+ F+ +VD LTL+ATPIPRTL L+
Sbjct: 719 LIGTHRLLSDDVRLPNLGLLVLDEEQRFGVRHKEKLKQFRRNVDALTLTATPIPRTLQLS 778
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
++G R+ S+I T PPER P+ T L + S ++ E+ R GQVF+V R++GLE
Sbjct: 779 MSGIRELSVIETAPPERKPVATALIERDDAALKSILEREIAREGQVFWVHNRVQGLERTT 838
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+++++ P + +AHGQ R LEETM +F G + +L+CT IVESGLD ANT+IV
Sbjct: 839 EYVRKLVPDARVGMAHGQMTERALEETMHRFWHGELDVLVCTAIVESGLDFPRANTLIVD 898
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
Q FGL QLYQLRGRVGR+D++A+A PD LSD A ER+ + + LG GFQ+A
Sbjct: 899 QAQMFGLGQLYQLRGRVGRSDRQAYAIFVVPDADNLSDIARERMRVILDMDYLGAGFQVA 958
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G I GE Q+G + VG++LF EML E+++++ P +SV+ ++NI
Sbjct: 959 MEDLRIRGAGNILGEAQSGHMTRVGLELFLEMLEEAVTRLKGDP----PRESVETELNIG 1014
Query: 690 --PRLPSEYINHLENPME----MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+P YI + + + + + AA+QDI +R +YG P +E L
Sbjct: 1015 IPAHIPEGYIEDARDRLRFYKALSSATDAAAQQDI------EMEMRDRYGVFPPELETFL 1068
Query: 744 KKLYVRR 750
L ++R
Sbjct: 1069 ALLVLKR 1075
>gi|366087296|ref|ZP_09453781.1| transcription-repair coupling factor [Lactobacillus zeae KCTC 3804]
Length = 1175
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 241/601 (40%), Positives = 378/601 (62%), Gaps = 14/601 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++ G+ + + V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 495 LKPGDYVVHVNHGIGQYTGM--ETMEVDGVHRDYITIVYRNNDKLFIPVDQLN-LVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ + K P +++KL T W++ K K I+ + +L++LY R +K + P +
Sbjct: 551 VSADGKAP-SVNKLGGT-EWQKTKRKVAARIEDIADELIDLYAKREAEKGYAFGPDDDLQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F +FPY TPDQ ++ +++RD+ E+ PMDRL+ GDVGFGKTEVALRA F + G
Sbjct: 609 QKFEDEFPYPETPDQLRSAKEIKRDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT +LA+QHFD + ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+V
Sbjct: 668 KQVAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTPHQNKETIKGLKNGTIDIVV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T + + + AI+ E++RGGQVFY+ R++ +E +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P I AHGQ QLE + F GA +L+ T I+E+G+D+ NANT+I+++
Sbjct: 847 LEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L+++A +RL A+++ ELG GF++A +
Sbjct: 907 DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEEAEKRLQAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + + +ID+ +
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKTAQKTDAEIDLGLEAY 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP++Y+ +E+ +A + + +E L ++G P + LL +++R
Sbjct: 1025 LPTDYVADSRQKIELYKRIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRF 1082
Query: 752 A 752
A
Sbjct: 1083 A 1083
>gi|421729449|ref|ZP_16168581.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
subsp. plantarum M27]
gi|407076693|gb|EKE49674.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
subsp. plantarum M27]
Length = 1177
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/563 (42%), Positives = 366/563 (65%), Gaps = 14/563 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQVGDYVVHVNHGIGKYLGI--ETLEIKGIHKDYLNIHYQ-GSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLG-GSEWKRVKKKVENSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + +F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQRQFESAFPYQETEDQLRSIQEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ +L PT +LA+QH++ ++ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIADGKQVALLVPTTILAQQHYETITERFQDYP-INIGLLSRFRTRKESNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R+
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVD 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P +A AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + S +++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDIPKSEQFET-E 1022
Query: 684 IDININPRLPSEYINHLENPMEM 706
IDI ++ +P YI + ++M
Sbjct: 1023 IDIELDAYIPENYIQDGKQKIDM 1045
>gi|417987792|ref|ZP_12628345.1| transcription-repair coupling factor [Lactobacillus casei 32G]
gi|410522184|gb|EKP97133.1| transcription-repair coupling factor [Lactobacillus casei 32G]
Length = 1174
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 384/614 (62%), Gaps = 14/614 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++ G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 495 LKPGDYVVHVNHGIGQYTGME-TLEVDG-VHRDYITIVYRNNDKLFIPVDQLN-LVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ + K P +++KL W++ K K I+ + +L++LY R +K + P +
Sbjct: 551 VSADGKTP-SVNKLGGA-EWQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F A+FPY TPDQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + G
Sbjct: 609 HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQA +L PT +LA+QHFD + ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+V
Sbjct: 668 KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T + + + AI+ E++RGGQVFY+ R++ +E +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P + AHGQ QLE + F GA +L+ T I+E+G+D+ NANT+I+++
Sbjct: 847 LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ A +RL A+++ ELG GF++A +
Sbjct: 907 DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + S +ID+ +
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP++Y+ +E+ +A + + +E L ++G P + LL +++R
Sbjct: 1025 LPTDYVADSRQKIELYKRIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRF 1082
Query: 752 AADIGITKIYASGK 765
A + + +G+
Sbjct: 1083 ADLAWVNHVTKAGQ 1096
>gi|219128770|ref|XP_002184578.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404028|gb|EEC43977.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 942
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 268/688 (38%), Positives = 398/688 (57%), Gaps = 73/688 (10%)
Query: 142 AGGFSYKVDPYSLRSGDYVVHKKVGIGKF------------------------------- 170
AGG++ +V P GD+VVH+K GIG+F
Sbjct: 90 AGGWTLEVFP-----GDFVVHRKYGIGRFETTCLRPKTKLNEEERLAQEERRAEILTTEL 144
Query: 171 -------------VGIKFDVQKDS---TVPIEYVF-IEYADGMAKLPVKQASRMLYRYNL 213
+ +F ++D+ + P V I YAD + +PV +A R L RY
Sbjct: 145 RKRKRVTPDEIQEIRARFGTEEDTDPLSNPQTTVLEITYADAVVHVPVDRAYR-LSRYRA 203
Query: 214 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN--PAI 271
+ +P+ LS++ AW + K K + ++ D++ LY R +R P+ + +
Sbjct: 204 GDAVVKPK-LSRVKGE-AWSKAKQKVEENTLQLAQDVLALYATRETLQRQPFDPSVEDVV 261
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF+ F YEPT DQKK F ++E D+ R PMDRLICGDVGFGKTEVA+RA+F + G
Sbjct: 262 QEFSKSFLYEPTTDQKKCFEEIENDMVWRSRPMDRLICGDVGFGKTEVAIRALFRSIING 321
Query: 332 KQAMVLAPTIVLAKQHFDVVSERF---SKYPDIKVGLLSRF---QSKAEKEEHLDMIKHG 385
+QA +LAPT VLA QH+ + +R ++Y +I + LL Q+KA +E + I+ G
Sbjct: 322 RQAALLAPTGVLAAQHYKNIVKRMGPGTEY-NINIALLRGGMGKQTKAGRELRGE-IEGG 379
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
+IVGTH+LL + + + NLGLLVVDEEQRFGVKQKE++ +DVLTLSATPIPRT
Sbjct: 380 KTQLIVGTHALLSNEMKFKNLGLLVVDEEQRFGVKQKERLKLICDGIDVLTLSATPIPRT 439
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L ++L+G RD S I +PPP R P TH+ FS++ V +AI EL RGGQ +YV+PRI L
Sbjct: 440 LQMSLSGIRDTSTIRSPPPMRKPTVTHVQDFSEDIVKTAISTELARGGQCYYVVPRISML 499
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
+E +Q FPG+ I AHG+ EE + +FA+G +L+ T ++E+G+DI + NT
Sbjct: 500 DEAEQTIQSLFPGIRIIQAHGRMQRNGAEENVAEFAEGNYDVLLATTVIENGVDIPSVNT 559
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
I+VQ+ Q FG++ LYQLRGRVGR+DK+A AY Y ++S +++QA RL A+ E ELG G
Sbjct: 560 IVVQNSQAFGMSTLYQLRGRVGRSDKQAFAYFLYREES-ITEQAAMRLQAIGELSELGSG 618
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
F +A +D+ IRG G++ G +Q+G VG DL+ ML +S+ K+ + VP ++
Sbjct: 619 FDVANRDLEIRGAGSLLGTEQSGMAAKVGFDLYMRMLKKSIRKLRGLDLPLVPRTNILFP 678
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAA-EQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
+ +P S ++ +E E +E KA + L+ T + +YG P +++ LK
Sbjct: 679 TDGSPSTFSLPMSFIERQSERRSEETKARLAESTSALVTLTNEWKSKYGSLPSTLQNQLK 738
Query: 745 KLYV----RRMAAD-IGITKIYASGKMV 767
L++ RR+ D +G+ ++ +GK +
Sbjct: 739 TLHLHACTRRLGIDLVGLVDVFGNGKRI 766
>gi|451348555|ref|YP_007447186.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
IT-45]
gi|449852313|gb|AGF29305.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
IT-45]
Length = 1177
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/563 (42%), Positives = 366/563 (65%), Gaps = 14/563 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQVGDYVVHVNHGIGKYLGI--ETLEIKGIHKDYLNIHYQ-GSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLG-GSEWKRVKKKVENSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + +F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQRQFESAFPYQETEDQLRSIQEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ +L PT +LA+QH++ ++ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIADGKQVALLVPTTILAQQHYETITERFQDYP-INIGLLSRFRTRKESNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R+
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVD 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P +A AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + S +++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDIPKSEQFET-E 1022
Query: 684 IDININPRLPSEYINHLENPMEM 706
IDI ++ +P YI + ++M
Sbjct: 1023 IDIELDAYIPENYIQDGKQKIDM 1045
>gi|357040093|ref|ZP_09101883.1| transcription-repair coupling factor [Desulfotomaculum gibsoniae DSM
7213]
gi|355357073|gb|EHG04852.1| transcription-repair coupling factor [Desulfotomaculum gibsoniae DSM
7213]
Length = 1172
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 253/621 (40%), Positives = 377/621 (60%), Gaps = 25/621 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQA 204
+++P++ L++GDYVVH GIG+++GI D+ + EY+ I+YA + +P Q
Sbjct: 498 RLEPFTDLKAGDYVVHVNHGIGRYLGIVPLDI---GGIRKEYLLIKYAAEDKLYVPTDQV 554
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
S +L +Y L E PR LSKL W R K++ + A++ M +L+ LY R +
Sbjct: 555 S-LLQKY-LGAEADSPR-LSKLGGAE-WNRVKSRVREAVRDMAQELLALYAARETVRGYA 610
Query: 265 YPKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ + EF FPYE TPDQ +A D +RD+ E PMDRL+CGDVG+GKTEVALRA
Sbjct: 611 FGSDTVWQKEFEGVFPYEETPDQLRAVNDAKRDM-ESPRPMDRLLCGDVGYGKTEVALRA 669
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V KQ VL PT +LA+QH++ ERF+ YP + V +LSRF++ E+ + + +K
Sbjct: 670 AFKAVMESKQVAVLVPTTILAQQHYNTFRERFAGYP-VTVEMLSRFRTPREQRQIVQALK 728
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH L+ +++ +LGLLVVDEEQRFGV KEK+ + SVDVLTL+ATPIP
Sbjct: 729 EGRIDIVIGTHRLVQEDIIFKDLGLLVVDEEQRFGVSHKEKLKKLRTSVDVLTLTATPIP 788
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL+++L G RD SL+ TPP R P++T++ + AI+ EL R GQVFYV R+
Sbjct: 789 RTLHMSLVGVRDTSLLETPPENRFPVQTYVLEEDPLLIREAIRRELGRDGQVFYVHNRVA 848
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
L+ +++ P I AHGQ +LE+ M F G +L+CT I+ESGLDI N
Sbjct: 849 DLDNVAMWIKGLVPEARIITAHGQMREEELEQIMLDFIDGDYDVLLCTTIIESGLDIPNV 908
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I+++ FGLAQLYQLRGRVGRA++ A+AYL + +L++ A +RLAA+ E E G
Sbjct: 909 NTLIIREANNFGLAQLYQLRGRVGRANRLAYAYLTFRKDRVLNEVAEKRLAAIREFTEFG 968
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV----DEHCVISVPY 679
G+++A +D+ IRG G + G +Q G + VG DL+ +L E++ + +E V +V
Sbjct: 969 SGYKIAMRDLEIRGAGNLLGAEQHGHIAAVGFDLYCRLLEEAVREARGQQEEQPVETV-- 1026
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
+++ + +P++YI +EM A+ Q + + E L ++G P +
Sbjct: 1027 ----VELPVEAYIPNQYIADANQKVEMYRRI--ASLQRVSTIADLEEELVDRFGDLPREV 1080
Query: 740 EILLKKLYVRRMAADIGITKI 760
+ LLK +R MA + I +
Sbjct: 1081 QNLLKVSRIRVMAGHLKIKSV 1101
>gi|227533044|ref|ZP_03963093.1| transcription-repair coupling factor (TRCF) [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|227189445|gb|EEI69512.1| transcription-repair coupling factor (TRCF) [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
Length = 1174
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 384/614 (62%), Gaps = 14/614 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++ G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 495 LKPGDYVVHVNHGIGQYTGME-TLEVDG-VHRDYITIVYRNNDKLFIPVDQLN-LVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ + K P +++KL W++ K K I+ + +L++LY R +K + P +
Sbjct: 551 VSADGKTP-SVNKLGGA-EWQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F A+FPY TPDQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + G
Sbjct: 609 HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQA +L PT +LA+QHFD + ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+V
Sbjct: 668 KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTPHQNKETIKGLKNGTIDIVV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T + + + AI+ E++RGGQVFY+ R++ +E +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P + AHGQ QLE + F GA +L+ T I+E+G+D+ NANT+I+++
Sbjct: 847 LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ A +RL A+++ ELG GF++A +
Sbjct: 907 DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + S +ID+ +
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP++Y+ +E+ +A + + +E L ++G P + LL +++R
Sbjct: 1025 LPTDYVADSRQKIELYKRIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRF 1082
Query: 752 AADIGITKIYASGK 765
A + + +G+
Sbjct: 1083 ADLAWVNHVTKAGQ 1096
>gi|375360746|ref|YP_005128785.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
gi|371566740|emb|CCF03590.1| transcription-repair coupling factor (superfamily II helicase)
[Bacillus amyloliquefaciens subsp. plantarum CAU B946]
Length = 1177
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/563 (42%), Positives = 366/563 (65%), Gaps = 14/563 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQVGDYVVHVNHGIGKYLGI--ETLEIKGIHKDYLNIHYQ-GSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLG-GSEWKRVKKKVENSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + +F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQRQFESAFPYQETEDQLRSIQEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ +L PT +LA+QH++ ++ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIADGKQVALLVPTTILAQQHYETITERFQDYP-INIGLLSRFRTRKESNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R+
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVD 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P +A AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + S +++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDIPKSEQFET-E 1022
Query: 684 IDININPRLPSEYINHLENPMEM 706
IDI ++ +P YI + ++M
Sbjct: 1023 IDIELDAYIPENYIQDGKQKIDM 1045
>gi|354807947|ref|ZP_09041396.1| transcription-repair coupling factor [Lactobacillus curvatus CRL 705]
gi|354513568|gb|EHE85566.1| transcription-repair coupling factor [Lactobacillus curvatus CRL 705]
Length = 1174
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 258/690 (37%), Positives = 417/690 (60%), Gaps = 30/690 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYAD-GMAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++VG++ ++ D V +Y+ I Y D G +PV Q + M+ +Y
Sbjct: 495 LKPGDYVVHVNHGIGEYVGME-TLEVDG-VHQDYITILYRDNGKLFIPVTQLN-MVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+ E K P+ ++KL W++ K+K I+ + DL+ELY R +K +PK+ +
Sbjct: 551 VSAEAKTPK-INKLGGG-EWQKTKSKVSAKIEDIADDLIELYAQREAEKGFAFPKDDQLQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
AEF QFPY T DQ ++ +++ D+ ER PMDRL+ GDVGFGKTEVALRA F V AG
Sbjct: 609 AEFEGQFPYPETDDQLRSTAEIKHDM-ERVRPMDRLLVGDVGFGKTEVALRAAFKAVEAG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + RF+ + +++GLLSRF+++ E L + G ++I++
Sbjct: 668 KQVAFLVPTTILAQQHYENMLTRFADFA-VEIGLLSRFKTRKEVTATLKGLAEGKVDIVI 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL + + +LGLL+VDEEQRFGVK KE++ K VDVLTL+ATPIPRTL++++
Sbjct: 727 GTHRLLSQDIKFKDLGLLIVDEEQRFGVKHKERLKQLKAQVDVLTLTATPIPRTLHMSML 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI+ EL+R GQVFY+ R+ +E +D
Sbjct: 787 GVRDLSVIETPPTNRYPIQTYVMEQNAGAMREAIERELERNGQVFYLHNRVSDIERTVDE 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q P + AHGQ QLE + F QG +L+ T I+E+G+D+ N NT+IV+D
Sbjct: 847 IQALVPEATVGFAHGQMTEAQLEGVIYDFVQGKYDVLVTTTIIETGVDMPNVNTMIVEDA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+ Y Y +L++ + +RL A+++ ELG GF++A +
Sbjct: 907 DHYGLSQLYQLRGRIGRSSRIAYGYFMYKPDKVLTEVSEKRLQAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K V++ + +ID+ +
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGFDLYSQMLGEAVAKKQGKQVVA--KTNAEIDLKLEAY 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP YIN +E+ + + + +Q L ++G P + LL ++
Sbjct: 1025 LPDAYINDQRQKIEIYKRIRQMDSEAAFDEIQ--ADLIDRFGDYPDQVANLLAIGQLKMN 1082
Query: 752 AADIGITKIYASGKMV-------GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAE 804
A D I I + +++ G + +++F +++++ + ++ FE +Q+ +
Sbjct: 1083 ADDALIETIKQTKEIIQVTLSAKGSRLVSGEQIF----EALSTTRLKATVGFEQEQLSVK 1138
Query: 805 LLLELPREQLLNWIFQCLAELYASLPALIK 834
L+++ P+ Q +W L+E+ + +L+K
Sbjct: 1139 LVIQ-PKMQPADW----LSEVATFVTSLLK 1163
>gi|429745651|ref|ZP_19279054.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
380 str. F0488]
gi|429168353|gb|EKY10190.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
380 str. F0488]
Length = 1109
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 245/627 (39%), Positives = 371/627 (59%), Gaps = 22/627 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYV H GIGKF G+ K +V+ I+ + Y D A + +YN
Sbjct: 428 LEVGDYVTHIDHGIGKFAGLQKIEVEGKQQEAIKLI---YGDRDVLFVSIHALHKITKYN 484
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ +P + KL + W+ K K K ++++ +L++LY R + K Y + +
Sbjct: 485 --GKDGKPPKIYKLG-SGVWKALKQKTKTRVKEIAFNLIQLYAKRKESKGYAYSHDSYMQ 541
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E A F YE TPDQ KA DV+ D+ E PMDRL+CGDVGFGKTEVA+RA F V G
Sbjct: 542 NELEASFLYEDTPDQSKATADVKADM-ESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNG 600
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT VLA QHF S+R +P +++ L+RF++ EK+ L+ + +G L+II+
Sbjct: 601 KQVAVLVPTTVLAFQHFQTFSQRMKDFP-VRIDYLNRFRTAKEKKTILEELANGQLDIII 659
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH ++G +V Y +LGLL+VDEEQ+FGV K+K+ + K ++DVLTL+ATPIPRTL +L
Sbjct: 660 GTHQIVGEKVAYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLM 719
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD S+I+TPPP R PI + + FS+E + I+YE+ RGGQVF++ R++ ++E
Sbjct: 720 AARDLSVINTPPPNRYPIDSQVVPFSEEIIRDGIRYEIQRGGQVFFMHNRVENIQEVAGM 779
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P IAI HGQ ++LEETM F GA +L+ T I+E+GLD+ NANTI + +
Sbjct: 780 IQRLLPDARIAIGHGQMDGKKLEETMLAFMDGAYDVLVATTIIENGLDVPNANTIFINNA 839
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+ L+Q+RGRVGR++K+A Y P +SD A +R+ A+ + +LG G +A K
Sbjct: 840 HNFGLSDLHQMRGRVGRSNKKAFCYFITPPLVAMSDDARKRIEAIAQFSDLGSGLNIAMK 899
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS---------V 682
D+ IRG G + G +Q+G + +G + + ++L E++ ++ E+ + + +
Sbjct: 900 DLEIRGAGDLLGGEQSGFINELGFETYQKILQEAIVELKENEFSELYHTAEEDKTYLTDT 959
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
QID + P Y+N + + + NE ++ L Q+ +L ++GK P L
Sbjct: 960 QIDTDFELLFPDTYVNRVAERLNLYNELSNLPNEE--ALQQYQRNLTDRFGKLPPQAIDL 1017
Query: 743 LKKLYVRRMAADIGITK-IYASGKMVG 768
L + V+ +A +GI K + +GKM G
Sbjct: 1018 LNSVRVKWLATRMGIEKLVMKNGKMTG 1044
>gi|170759697|ref|YP_001788879.1| transcription-repair coupling factor [Clostridium botulinum A3 str.
Loch Maree]
gi|169406686|gb|ACA55097.1| transcription-repair coupling factor [Clostridium botulinum A3 str.
Loch Maree]
Length = 1168
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 251/676 (37%), Positives = 409/676 (60%), Gaps = 31/676 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+ GD+VVH GIG F GIK ++Q + +E ++ ++D +PV+Q M+ RY
Sbjct: 501 LKPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIY--HSDDKLYVPVEQLD-MVQRY- 556
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+ +E K+P+ ++KL ++ W + K K K +I+++ DL++LY R K Y +
Sbjct: 557 IGSEGKKPK-VNKLG-SSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGYKYSDDTVWQ 614
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F +FPYE TPDQ A D++RD+ E PMDRL+CGDVG+GKTEVA+RA F V G
Sbjct: 615 KQFEEEFPYEETPDQLLAIEDIKRDM-ESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDG 673
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ +RFS +P I V ++SRF++ +E++ + IK G+++I++
Sbjct: 674 KQVAFLVPTTILAQQHYNNFKQRFSDFP-ITVDVISRFRTLSEQKATIKSIKEGNVDILI 732
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + + +LGLL++DEEQRFGVK KEK+ + K +VDVLTLSATPIPRTL+++L
Sbjct: 733 GTHRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLV 792
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP ER P++T++ ++ + + +I E+ RGGQ+++V R++ + E +
Sbjct: 793 GVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVYNRVESIHEMASY 852
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+ + P + IAHGQ ++LE + F + ILI T I+E+G+DI+N NT+I+ D
Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDA 912
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR ++ A+ YL Y +L++ A +RL A+++ ELG GF++A K
Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDIN 687
D+ IRG G + G Q G + ++G DL+ ML +++ +D+ V +++
Sbjct: 973 DLEIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPV------ETSVELK 1026
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
I+ +P+ YI +E+ + ++ + M E L ++ P S+ L+ Y
Sbjct: 1027 IDAYIPNTYIKDETQKIEVYKKIASIDSKEEF--MDIEEELEDRFSDIPISVYNLMNISY 1084
Query: 748 VRRMAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEV-----HRNSLTFEG 798
+R + + I +I V K+++ +K+ K+++D + EV + ++ +
Sbjct: 1085 IRSLGKKLDIEEIKEISNEVVFQFEDKSSLREKIVKIIMDKYSKEVAFKLNEKPAIGYNI 1144
Query: 799 DQIKAELLLELPREQL 814
IK E LL + R L
Sbjct: 1145 KNIKKEQLLPIIRNFL 1160
>gi|384097630|ref|ZP_09998750.1| transcription-repair coupling factor [Imtechella halotolerans K1]
gi|383836512|gb|EID75919.1| transcription-repair coupling factor [Imtechella halotolerans K1]
Length = 1128
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 243/628 (38%), Positives = 370/628 (58%), Gaps = 22/628 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
+L GD+V H GIGKF G+ K +V+ I+ ++ E + + + +Y
Sbjct: 441 NLEIGDFVTHIDHGIGKFAGLQKIEVEGKMQEAIKLIYGERDILYVSI---HSLHKITKY 497
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
N + +P + KL + AW+ K K K ++++ +L+ LY R +K + P +
Sbjct: 498 N--GKDGKPPKIYKLG-SNAWKALKQKTKTRVKEIAFNLINLYAKRKTEKGYAFGPDSYL 554
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E A F YE TPDQ KA +DV+ D+ E + PMDRL+CGDVGFGKTEVA+RA F V
Sbjct: 555 QNELEASFLYEDTPDQSKATIDVKADM-ELDRPMDRLVCGDVGFGKTEVAVRAAFKAVDN 613
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ +L PT +LA QHF ER +P + V L+RF++ EK E LD + G ++II
Sbjct: 614 GKQVAILVPTTILAFQHFKTFRERLKDFP-VNVEYLNRFRTAKEKRETLDRLAEGKVDII 672
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L G +V++ +LGLL+VDEEQ+FGV K+K+ S K ++DVLTL+ATPIPRTL +L
Sbjct: 673 IGTHQLAGEKVIFKDLGLLIVDEEQKFGVAVKDKLKSLKENIDVLTLTATPIPRTLQFSL 732
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S+I+TPPP R PI++ + FS+E + A+ YE+ RGGQVF++ R++ ++E
Sbjct: 733 MAARDLSVITTPPPNRYPIESQVIRFSEELIRDAVSYEIQRGGQVFFIHNRVENIKEVAG 792
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P I I HGQ ++LE+ M F +G +L+ T I+ESGLD+ NANTI + +
Sbjct: 793 MIQRLVPDAKIGIGHGQMDGKKLEQLMLAFMEGHFDVLVATTIIESGLDVPNANTIFINN 852
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A Y P S ++D A +R+ ALE+ +LG GF +A
Sbjct: 853 ANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTDDARKRIQALEQFSDLGSGFNIAM 912
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS---------VPYKS 681
KD+ IRG G + G +Q+G + +G D + ++L E++ ++ E+ V K
Sbjct: 913 KDLEIRGAGDLLGGEQSGFINEIGFDTYQKILQEAIEELKENEFADLYPTSETDKVYLKD 972
Query: 682 VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
Q+D + P Y+N + + + NE +D L + L ++G P
Sbjct: 973 TQLDSDFQLLFPDNYVNSVTERLNLYNELSTLTNED--ELQAYEARLIDRFGALPDEASD 1030
Query: 742 LLKKLYVRRMAADIGITKI-YASGKMVG 768
LL + ++ +A +G+ +I GKM+G
Sbjct: 1031 LLNSVRIKWIATKMGLERIVLKQGKMIG 1058
>gi|397904462|ref|ZP_10505373.1| Transcription-repair coupling factor [Caloramator australicus RC3]
gi|397162472|emb|CCJ32707.1| Transcription-repair coupling factor [Caloramator australicus RC3]
Length = 1165
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 246/618 (39%), Positives = 391/618 (63%), Gaps = 15/618 (2%)
Query: 146 SYKVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQ 203
S K+D ++ L+ GDYVVH+ GIG F GI V + + +Y+ I+Y + +PV+Q
Sbjct: 492 SKKIDVFTDLKVGDYVVHEIHGIGIFKGINELVIE--GIKRDYLVIQYQGNDTLYVPVEQ 549
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK-QKR 262
++ +Y ++ P ++KL ++ W + K K K ++++M DL++LY R K Q
Sbjct: 550 LD-IIQKYIGADDN--PPKVNKLG-SSDWIKTKNKVKASLKEMAEDLIKLYAERSKIQGH 605
Query: 263 PPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
P P +F +FPY+ T DQ +A +++RD+ E PMDRL+CGDVG+GKTEVA+R
Sbjct: 606 AFSPDTPWQRQFEDEFPYQETEDQLRAIEEIKRDM-ESPKPMDRLLCGDVGYGKTEVAMR 664
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F V GKQ VL PT +LA+QH++ +RF YP I + ++SRF+++ E++ L +
Sbjct: 665 AAFKAVMDGKQVAVLVPTTILAEQHYNTFLQRFKGYP-INIDMISRFRNRQEQKRTLKEL 723
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
+G+++II+GTH LL V + +LGLL++DEEQRFGV KEKI + K ++DVLTL+ATPI
Sbjct: 724 ANGNVDIIIGTHKLLNKEVKFKDLGLLIIDEEQRFGVSHKEKIKALKKNIDVLTLTATPI 783
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL+++L G RD S+I TPP +R P++T++ +++ V AI E+ RGGQVF+V R+
Sbjct: 784 PRTLHMSLIGVRDMSIIETPPEDRYPVQTYVLEYNEAIVREAILREISRGGQVFFVYNRV 843
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + + + P I IAHGQ +LE+ + F G +IL+CT I+E+G+D+ N
Sbjct: 844 ETIIDMQREISKLVPEARIIIAHGQMNEEELEDAIISFINGDAEILLCTTIIETGIDMPN 903
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E E
Sbjct: 904 VNTLIVYDADRMGLSQLYQLRGRVGRSNRIAYAYFTYKKDKVLSEAAEKRLKAIKEFTEF 963
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 682
G GF++A +D+ IRG G++FG +Q G + VG D++ ++L E++ ++ +
Sbjct: 964 GSGFKIAMRDLEIRGAGSLFGTKQHGHLAAVGYDMYCKLLDEAVRELKGE--VKEEEIET 1021
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
QI++ IN +PSEYI + +E+ + A+ D M + L ++G P ++E L
Sbjct: 1022 QIELQINAFIPSEYIEDEKLKIEVYKKI--ASIFDYESKMDIIDELIDRFGDVPKNVENL 1079
Query: 743 LKKLYVRRMAADIGITKI 760
++ Y++ +A + IT +
Sbjct: 1080 IQVAYIKALARKLKITNV 1097
>gi|120602306|ref|YP_966706.1| transcription-repair coupling factor [Desulfovibrio vulgaris DP4]
gi|387153261|ref|YP_005702197.1| transcription-repair coupling factor [Desulfovibrio vulgaris RCH1]
gi|120562535|gb|ABM28279.1| transcription-repair coupling factor [Desulfovibrio vulgaris DP4]
gi|311233705|gb|ADP86559.1| transcription-repair coupling factor [Desulfovibrio vulgaris RCH1]
Length = 1159
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 260/607 (42%), Positives = 373/607 (61%), Gaps = 28/607 (4%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYR 210
L+ GD +VH+ G+ +FVG+ + D+ V +++ +EYA D LPV + S ++ R
Sbjct: 487 GLQPGDLLVHRDYGVARFVGLERMDL---GGVGNDFLLLEYAGDDRLYLPVDRLS-LVQR 542
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNP 269
+ ++TK +L +L AW+ K K + AI+K+ DL+E+Y +R K Y P
Sbjct: 543 FKGADDTKP--SLDRLG-GGAWQSSKDKARKAIEKIAADLVEMYAYRKIAKGYTYGPIGE 599
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF A F +E TPDQ +A DV D+ ++ PMDRL+CGDVGFGKTEVALRA F S
Sbjct: 600 LYREFEASFGFEETPDQARAIQDVLEDM-DKPVPMDRLVCGDVGFGKTEVALRAAFRAAS 658
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
G+Q +L PT VLA+QH+ R + +P + VG+LSRF SK ++ E L GH++I
Sbjct: 659 EGRQVALLCPTTVLAEQHYQTFRSRLAGFP-VNVGMLSRFVSKQKQTEVLAAAAKGHVDI 717
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH LL V NLGLLV+DEEQRFGV+ KEK+ F+ +VD LTL+ATPIPRTL L+
Sbjct: 718 LIGTHRLLSDDVRLPNLGLLVLDEEQRFGVRHKEKLKQFRRNVDALTLTATPIPRTLQLS 777
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
++G R+ S+I T PPER P+ T L + S ++ E+ R GQVF+V R++GLE
Sbjct: 778 MSGIRELSVIETAPPERKPVATALIERDDAALKSILEREIAREGQVFWVHNRVQGLERTT 837
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+++++ P + +AHGQ R LEETM +F G + +L+CT IVESGLD ANT+IV
Sbjct: 838 EYVRKLVPDARVGMAHGQMTERALEETMHRFWHGELDVLVCTAIVESGLDFPRANTLIVD 897
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
Q FGL QLYQLRGRVGR+D++A+A PD LSD A ER+ + + LG GFQ+A
Sbjct: 898 QAQMFGLGQLYQLRGRVGRSDRQAYAIFVVPDADNLSDIARERMRVILDMDYLGAGFQVA 957
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G I GE Q+G + VG++LF EML E+++++ P +SV+ ++NI
Sbjct: 958 MEDLRIRGAGNILGEAQSGHMTRVGLELFLEMLEEAVTRLKGDP----PRESVETELNIG 1013
Query: 690 --PRLPSEYINHLENPME----MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+P YI + + + + + AA+QDI +R +YG P +E L
Sbjct: 1014 IPAHIPEGYIEDARDRLRFYKALSSATDAAAQQDI------EMEMRDRYGVFPPELETFL 1067
Query: 744 KKLYVRR 750
L ++R
Sbjct: 1068 ALLVLKR 1074
>gi|306820709|ref|ZP_07454337.1| transcription-repair coupling factor [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551319|gb|EFM39282.1| transcription-repair coupling factor [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 701
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 249/629 (39%), Positives = 398/629 (63%), Gaps = 24/629 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GD VVH+ GIGKF+GI + +++++V +Y+ I Y DG +P+ Q + + RY
Sbjct: 65 LKIGDIVVHEVYGIGKFLGI--EQKENNSVKKDYIKISYKDGDTIYVPISQMDK-VQRY- 120
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ N + + +L+KL ++ W+++K K K A++++ L++LY R QK + K+
Sbjct: 121 IGNASDKV-SLTKLG-SSQWKKQKAKAKKAVEEIARYLVDLYAQRENQKGYAFSKDTVWQ 178
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF + F +E T DQ ++ +V++D+ E PMDRL+CGDVG+GKTEVA+R IF
Sbjct: 179 REFESLFAFEETQDQIRSIKEVKKDM-ENIKPMDRLLCGDVGYGKTEVAIRGIFKACMDS 237
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH+ VSERF +P +KV +LSRF+++ E+ E L+ +K G +++I+
Sbjct: 238 KQVAFLVPTTILAQQHYKTVSERFENFP-LKVEVLSRFKTRKEQNEILEKLKLGEVDVII 296
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L V++ +LGLLV+DEEQRFGVK KEKI S K ++DVLTL+ATPIPRTL ++L+
Sbjct: 297 GTHRILSKDVIFKDLGLLVIDEEQRFGVKDKEKIKSLKTNIDVLTLTATPIPRTLNMSLS 356
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ PP +RL + T+++ + ++ AI+ E+ RGGQVF+V ++ +++
Sbjct: 357 GIRDMSVLEEPPNDRLSVITYVTEAREGIIMDAIEREISRGGQVFFVYNSVEDIDKMSAN 416
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+++ P V +A+AHGQ LE+ M + + +L+CT I+E+G+DI NANTIIV +
Sbjct: 417 IKKLVPNVRLAVAHGQMQPTVLEDIMMDYLEKKYDLLLCTTIIETGMDISNANTIIVYNA 476
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+ ++A+AYL Y +L++ A +RL A+ + E G GF++A
Sbjct: 477 DKMGLSQLYQLRGRVGRSSRQAYAYLMYEKDKVLTEIAQKRLKAIRDFTEFGSGFKVAMM 536
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISVPYKSVQIDIN 687
D+ +RG G + GE Q+G + VG DL+ +ML +S ++ + E V++ Y I
Sbjct: 537 DLELRGSGNLLGETQSGHIEEVGYDLYIKMLNDSFNRLKGNIQEEKVMTEVY------IK 590
Query: 688 INPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
+N +P YI ME+ + A ++E+D + + E ++ P+ +E LLK
Sbjct: 591 VNAYIPDTYIEDEMQKMEIYKKIASISSEEDYFDVQAEIED---RFSDIPFQVENLLKIA 647
Query: 747 YVRRMAADIGITKIYASGKMVGMKTNMNK 775
+R IGI KI K+V +++ +K
Sbjct: 648 TIRSYGEKIGIEKITQKNKIVIYESSKDK 676
>gi|375087626|ref|ZP_09733972.1| transcription-repair coupling factor [Dolosigranulum pigrum ATCC
51524]
gi|374563902|gb|EHR35206.1| transcription-repair coupling factor [Dolosigranulum pigrum ATCC
51524]
Length = 1174
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 238/556 (42%), Positives = 361/556 (64%), Gaps = 14/556 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYRY 211
L GDYVVH GIG++VG+ + + V +Y+ + Y + +KL PV Q + +L +Y
Sbjct: 498 LSPGDYVVHVHHGIGEYVGM--ETMEIGGVNQDYLSVMYKNN-SKLFIPVTQLN-LLQKY 553
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E P+ ++KL T+ WE+ K K ++ + DL+ELY R +QK YP + A
Sbjct: 554 -VASEGHTPK-INKLGGTS-WEKTKRKVGSQVEDIADDLIELYAERERQKGYAYPADNAY 610
Query: 272 A-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF A FPY T DQ ++ +++ DL E + PMDRL+ GDVG+GKTEVALRAIF VV
Sbjct: 611 QKEFEAAFPYSETDDQLRSAKEIKEDLQEAK-PMDRLLVGDVGYGKTEVALRAIFKVVQE 669
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQA L PT VLA+QH++ + ERF +P +++G+LSRF+++ E +E + +K G L+++
Sbjct: 670 GKQAAFLVPTTVLAQQHYETMIERFVDFP-VEIGILSRFKTQKEVKETISQLKKGQLDVV 728
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
VGTH LL +V+ +LGLLVVDEEQRFGVK KE++ K VDVLTL+ATPIPRTL++++
Sbjct: 729 VGTHRLLSKDIVFQDLGLLVVDEEQRFGVKHKERLKDMKTQVDVLTLTATPIPRTLHMSM 788
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+I TPP R P++T++ + + AI+ E+ RGGQ+F++ R+K +E M
Sbjct: 789 LGVRDLSVIETPPANRYPVQTYVMEMNSIVIREAIEREMARGGQIFFLHNRVKTIERRMF 848
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
LQ+ P I+ HGQ +LE + +F G +++ T I+E+G+D+ N NT+IV+D
Sbjct: 849 ELQELVPDARISCIHGQMTETELENRLFEFLSGEYDVIVTTTIIETGVDMPNVNTLIVED 908
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
GL+QLYQLRGRVGR+ + A+AY + +L++ + RL A+++ ELG GF++A
Sbjct: 909 ADHMGLSQLYQLRGRVGRSSRVAYAYFMHQPGKVLTEVSESRLQAIKDFTELGSGFKIAM 968
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G+QQ G + VG DL+ +ML E++ + + + +++ID+ IN
Sbjct: 969 RDLAIRGAGNLLGKQQHGFIDAVGFDLYSQMLEEAVERKQNNG--KLKKTTLEIDVAINA 1026
Query: 691 RLPSEYINHLENPMEM 706
LPS+YI +E+
Sbjct: 1027 YLPSDYIQDERQKIEL 1042
>gi|358052308|ref|ZP_09146214.1| transcription-repair coupling factor [Staphylococcus simiae CCM 7213]
gi|357258191|gb|EHJ08342.1| transcription-repair coupling factor [Staphylococcus simiae CCM 7213]
Length = 1168
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 245/628 (39%), Positives = 390/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 540
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K P+ L+KL T W++ K K + +++ + +L+ELY R
Sbjct: 541 VDQMDQ-VQKY-VASEDKTPK-LNKLGGT-EWKKTKAKVQQSVEDIAEELIELYKEREMA 596
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
+ + ++ F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEV
Sbjct: 597 EGYQFGEDTTEQTTFELDFPYELTPDQAKSIDEIKMDM-QKSRPMDRLLCGDVGYGKTEV 655
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF+S E ++
Sbjct: 656 AVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRSAKEIKQTK 714
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ IK G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 715 EGIKTGFVDIVVGTHKLLSKDIEYKDLGLLIVDEEQRFGVRHKERIKTMKNNVDVLTLTA 774
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 775 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 834
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 835 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 894
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E
Sbjct: 895 VPNANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEF 954
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++
Sbjct: 955 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKETQPDA 1014
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
V++D+N++ LP+EYI + + +E+ + + ++ L+ + L ++ P +
Sbjct: 1015 PEVEVDLNLDAYLPTEYITNEQAKIEIYKKLRQIETEE--QLLDIKDELIDRFNDYPIEV 1072
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A GIT I GK +
Sbjct: 1073 ERLLDIVEIKIHALHAGITLIKDKGKTI 1100
>gi|315644370|ref|ZP_07897510.1| transcription-repair coupling factor [Paenibacillus vortex V453]
gi|315280247|gb|EFU43539.1| transcription-repair coupling factor [Paenibacillus vortex V453]
Length = 1175
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 249/622 (40%), Positives = 381/622 (61%), Gaps = 20/622 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH+ GIGK++GI + + + +Y+ I YA G +P++Q ++ +Y
Sbjct: 489 LKVGDYVVHQNHGIGKYMGIG--TLEINGIHKDYMHILYAGGDKLSVPIEQID-LIQKY- 544
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKNP 269
+ +E K P+ + KL W R K K + ++Q + DL++LY R Q P Y
Sbjct: 545 VGSEDKEPK-VYKLG-GNEWTRVKNKVRSSVQDIADDLIKLYAER--QSAPGYGFEKDTS 600
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF FPY+ TPDQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 601 EQQEFEDMFPYDETPDQLRAITEIKKDM-EQNRPMDRLLCGDVGYGKTEVAVRAAFKSAI 659
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQ VL PT +LA+QH++ ERF+ YP I + +LSRF+S+ E+ E + +K G ++I
Sbjct: 660 EGKQVAVLVPTTILAQQHYETFRERFANYP-INIQVLSRFRSRKEQNETIKKVKQGSVDI 718
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH LL +V+ +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL+++
Sbjct: 719 LIGTHRLLSQDIVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMS 778
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
+ G RD S+I TPP R P++T++ S+ V AI+ EL RGGQV+Y+ R++G++E
Sbjct: 779 MLGVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIERELARGGQVYYLYNRVQGIQEMA 838
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+ P + + HGQ +LE+T+ F G +L+ T+I+E+G+DI N NT+IV
Sbjct: 839 AQISMLVPEARVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVH 898
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E ELG GF++A
Sbjct: 899 DADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIA 958
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK--SVQID 685
+D+ IRG G + G +Q G + +VG DL+ +ML E + KV ++P K + ID
Sbjct: 959 MRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIQKRKVSMLGEPALPTKDWNTSID 1018
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ I+ LPS+YI +E+ + + D + + L ++G+ P ++ LL
Sbjct: 1019 LGIDAYLPSDYIYDSIQKIEIYKKVAVVSSIDESA--ELEDELLDRFGELPLAVSNLLAV 1076
Query: 746 LYVRRMAADIGITKIYASGKMV 767
++ GI I G V
Sbjct: 1077 SRLKVYGHTYGIDSIIQRGDDV 1098
>gi|410726038|ref|ZP_11364298.1| transcription-repair coupling factor Mfd [Clostridium sp. Maddingley
MBC34-26]
gi|410601470|gb|EKQ55981.1| transcription-repair coupling factor Mfd [Clostridium sp. Maddingley
MBC34-26]
Length = 1166
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 252/621 (40%), Positives = 388/621 (62%), Gaps = 18/621 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH GIG + GIK DV +Y+ I Y G +PV Q ++ +Y
Sbjct: 502 LKPGDYVVHANHGIGVYKGIKQIDVGGHKR---DYLDIVYDKGDKLYVPVDQLD-LIQKY 557
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E K P+ ++KL + W++ K K + +I ++ DL++LY R K +PK+
Sbjct: 558 -IGSEGKSPK-VNKLG-SAEWQKAKAKARKSINEIAEDLVKLYAMRSTVKGHKFPKDTEW 614
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FP+E TPDQ + +++ D+ E + PMDRL+CGDVG+GKTEVALRA F V
Sbjct: 615 QKQFEDEFPFEETPDQLTSLEEIKYDM-ESDKPMDRLLCGDVGYGKTEVALRAAFKAVMD 673
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ +L PT +LA+QH+ + RFS +P IK+ ++SRF++ +++E L +K G+L+I+
Sbjct: 674 GKQVAILVPTTILAEQHYKNIKNRFSDFP-IKIDMVSRFRTAKQQKEILQKVKEGNLDIL 732
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ + + +LGLL+VDEEQRFGVKQKE+I K +VDVLTLSATPIPRTL+++L
Sbjct: 733 IGTHRLVSKDIQFKDLGLLIVDEEQRFGVKQKEQIKGIKKNVDVLTLSATPIPRTLHMSL 792
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
+G RD S+I TPP ER P++T++ + + + AI E+ RGGQV++V R++ +E
Sbjct: 793 SGVRDISVIETPPEERYPVQTYVVEQNDQLIRDAILREIGRGGQVYFVYNRVEDIERMAK 852
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
++Q P + +AHGQ RQLE+ M F +L+CT I+E+G+DIQN NTII+ D
Sbjct: 853 YVQALVPESKVGVAHGQMAERQLEKEMYDFMSEEYNVLVCTTIIETGMDIQNVNTIIIYD 912
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR+++ A+AYL Y +L++ A +RL AL++ ELG GF++A
Sbjct: 913 ADKMGLSQLYQLRGRVGRSNRIAYAYLLYTKDKVLTEIAEKRLKALKDFTELGSGFKIAM 972
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G Q G + ++G DL+ ML E K+ + + P ++ +DI ++
Sbjct: 973 RDLEIRGAGNMMGSSQHGHMASIGYDLYCRML-EDTVKLLKGEIQKEPIETT-LDIKVDA 1030
Query: 691 RLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+ N++E+ ++ + +K AA + I E L +Y K P + L+ Y++
Sbjct: 1031 FISE---NYIEDEIQKIEVYKKIAAIEGIDDYNDIKEELEDRYSKIPEPVYNLMDIAYIK 1087
Query: 750 RMAADIGITKIYASGKMVGMK 770
A I I +I + K + K
Sbjct: 1088 SQAKSIFIEEIKETPKEILFK 1108
>gi|366090577|ref|ZP_09456943.1| transcription-repair coupling factor [Lactobacillus acidipiscis KCTC
13900]
Length = 1176
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 260/643 (40%), Positives = 389/643 (60%), Gaps = 49/643 (7%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIE-----YVFIEYA-DGMAKLPVKQASR 206
L+ GDYVVH GIG+F+G+K T+ ++ Y+ I+Y D +PV Q R
Sbjct: 495 DLKKGDYVVHVNHGIGRFMGMK-------TMEVDGKHQDYLTIDYQNDAQLFIPVTQLDR 547
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVA--IQKMVVDLMELYLHRLKQKRPP 264
+ +Y + +E K P ++KL + E KTK +VA I+ + DL++LY R +K
Sbjct: 548 -VQKY-VSSEAKTPH-INKLGGS---EWTKTKKRVAGKIEDIADDLVDLYAKREAEKGFA 601
Query: 265 YPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ K+ + EF FPY TPDQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVA+RA
Sbjct: 602 FSKDTSYQREFEDAFPYTETPDQLRSADEIKRDM-EKEKPMDRLLIGDVGYGKTEVAMRA 660
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + GKQ LAPT VLA+QH++ + ERF+ +P +++GLLSRF +K + + + +
Sbjct: 661 AFKAIQDGKQVAFLAPTTVLAQQHYETLGERFTGFP-VEIGLLSRFVTKKQSDLTIKDAR 719
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G +I+VGTH LL V + +LGLL+VDEEQRFGVK KEK+ K +VDVLTL+ATPIP
Sbjct: 720 EGMCDILVGTHRLLSKDVKFADLGLLIVDEEQRFGVKHKEKLKQLKTNVDVLTLTATPIP 779
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL +++ G RD S+I T P R PI+T++ + V+ AI+ E+ RGGQVFY+ R+
Sbjct: 780 RTLNMSMLGVRDLSVIETAPMNRYPIQTYVMEQNYGVVVDAIRREMSRGGQVFYLHNRVM 839
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E+ D LQ P IA HGQ Q+E + F G +L+ T I+E+G+DI NA
Sbjct: 840 DIEKVADELQALVPDARIAYIHGQMSENQMERILYNFINGEYDVLVTTTIIETGVDIPNA 899
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+ V++ + GLAQLYQLRGRVGR+ + A++Y Y +L++ + +RL A+++ ELG
Sbjct: 900 NTLFVENADRMGLAQLYQLRGRVGRSSRVAYSYFMYQQDKILNEVSEKRLEAIKDFTELG 959
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS-----KVDEHCVISVP 678
GF++A +D+ IRG G I G+QQ G + +VG DL+ +ML ES++ KV E
Sbjct: 960 SGFKIAMRDLSIRGAGNILGKQQHGFIDSVGYDLYTQMLSESVARKRGKKVQEKT----- 1014
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+I++++ LP YI +E+ + +D + +Q + L ++G+ P
Sbjct: 1015 --DTEINLDVEAYLPGTYIEDPRQKIEIYKRVRQLQSKDEYLEVQ--DDLIDRFGEYPVE 1070
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKMV-GMKTNMNKKVFKM 780
+ ILL DIG+ K+YA MV +K N K V ++
Sbjct: 1071 VAILL----------DIGLLKMYADQAMVDSIKQNGKKIVIEL 1103
>gi|365905498|ref|ZP_09443257.1| transcription-repair coupling factor [Lactobacillus versmoldensis
KCTC 3814]
Length = 1179
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 233/567 (41%), Positives = 371/567 (65%), Gaps = 23/567 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIE-----YVFIEY-ADGMAKLP 200
++ YS L+ GDYVVH GIGKF+G+K T+ ++ Y+ IEY DG +P
Sbjct: 487 RLKSYSELKPGDYVVHVNHGIGKFIGMK-------TMEVDGKHQDYITIEYRDDGRLFIP 539
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q M+ +Y + +E K P+ ++KL W + K K + +I+ + DL++LY R +
Sbjct: 540 VSQLD-MVQKY-VSSEGKSPK-INKLG-GKEWAKTKRKVQSSIEDIADDLIDLYAKREAE 595
Query: 261 KRPPYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
K P+PK+ + +F FPY TPDQ ++ +++RD+ E+ PMDRL+ GDVGFGKTEV
Sbjct: 596 KGHPFPKDDQMQHDFDNAFPYPETPDQLRSVDEIKRDM-EKAHPMDRLLVGDVGFGKTEV 654
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
ALRA F V GKQ + LAPT +L++QH++ + +RF +P + + +LSRFQ++ E +E +
Sbjct: 655 ALRAAFKAVEDGKQVVFLAPTTLLSQQHYETMKDRFEGFP-VNIAVLSRFQTRKESQEII 713
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ ++ G ++I+VGTH LL V ++++GLL++DEEQRFGVK KEKI K +VDVLTL+A
Sbjct: 714 EKLQTGEIDIVVGTHRLLSKDVKFHDIGLLIIDEEQRFGVKHKEKIKELKANVDVLTLTA 773
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL +++ G RD SLI T P R P++T++ + + V SAIK E++RGGQVFY+
Sbjct: 774 TPIPRTLNMSMLGVRDLSLIETAPSNRYPVQTYVMEQNFDVVASAIKREMERGGQVFYLH 833
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
R++ +E+ D +Q P +A A+G+ Q+E + + +G +L+ T I+E+G+D
Sbjct: 834 NRVEDMEQVADQIQALVPEARVATANGRMNQTQMEGVISDYLEGDYDVLVTTTIIETGVD 893
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ N NT++V++ ++GL+QLYQ+RGRVGR+ + A+AYL Y +L++ +RL A++
Sbjct: 894 MPNTNTLVVENADRYGLSQLYQIRGRVGRSSRVAYAYLMYRPNKVLTEVGEKRLEAIKNF 953
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ H
Sbjct: 954 TELGSGFKIAMRDLSIRGAGNLLGKQQHGFIDSVGFDLYSQMLNEAVARKRGHT--KTEK 1011
Query: 680 KSVQIDININPRLPSEYINHLENPMEM 706
+ ++++ I+ LP++YI +E+
Sbjct: 1012 TNSELNLEIDAYLPADYITDERQKVEL 1038
>gi|307718846|ref|YP_003874378.1| transcription-repair coupling factor [Spirochaeta thermophila DSM
6192]
gi|306532571|gb|ADN02105.1| transcription-repair coupling factor [Spirochaeta thermophila DSM
6192]
Length = 1127
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 232/528 (43%), Positives = 352/528 (66%), Gaps = 13/528 (2%)
Query: 146 SYKVDPY-SLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYA-DGMAKLPVK 202
S +D + L GDYVVH GIG+F+GIK V ++ +Y+ +EYA + +P++
Sbjct: 455 SAPIDSFVELSPGDYVVHVHHGIGRFLGIKRMKVGENER---DYLHLEYAGEEYVFVPIE 511
Query: 203 QASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
Q + ++ RY + + PR L KL +++W++RK + K +++ + L+ +Y R
Sbjct: 512 QVN-LVQRY-IGSSDAAPR-LDKLG-SSSWQKRKERVKKSVEDLAKRLLAIYSRRKLAHG 567
Query: 263 PPYPKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
+P + EF A+FP+E T DQ + +V+RD+ E PMDRL+CGDVGFGKTE+AL
Sbjct: 568 FAFPPDTEWQMEFEARFPFEETEDQLRCIEEVKRDM-ESPRPMDRLVCGDVGFGKTEIAL 626
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F V+AGKQ +LAPT +L +QH++ ER +P ++ +LSRF E+ E L
Sbjct: 627 RAAFKAVTAGKQVAILAPTTILVEQHYETFQERLEGFP-VRAAMLSRFVPVPEQREILKD 685
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
++ G ++I++GTH +L VV+ +LGLLV+DEEQRFGVK KE++ K SVD LTL+ATP
Sbjct: 686 LREGKVDILIGTHRILQKDVVFKDLGLLVIDEEQRFGVKDKERLKELKASVDCLTLTATP 745
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL+++L RD SL+ TPP ER PI+TH+ FS+E + AI+ E++RGGQVFY+ R
Sbjct: 746 IPRTLHMSLLKIRDISLLETPPRERRPIETHILEFSEEIIARAIRREVERGGQVFYLHNR 805
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
++ L + F+++ P V + +AHG+ S QLEE M +F G +L+ T I+E+G++I
Sbjct: 806 VETLPQVKTFIERLVPEVMVEVAHGKMSSHQLEEIMHRFIHGGFHVLVSTTIIENGINIP 865
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANTII+ +G+AQLYQLRGRVGR+D+ A+AYLFYP + +S+ A +RL + + E
Sbjct: 866 NANTIIIDRADMYGIAQLYQLRGRVGRSDRTAYAYLFYPAQREISELAAKRLQVIADHTE 925
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV 669
LG GF++A KD+ +RG G + G +Q+GD+ +VG D++ +L E++ ++
Sbjct: 926 LGAGFKVALKDLEVRGAGNLLGREQSGDIHSVGFDMYLRLLDEAIREL 973
>gi|191639457|ref|YP_001988623.1| transcription-repair coupling factor [Lactobacillus casei BL23]
gi|385821223|ref|YP_005857610.1| transcription-repair coupling factor [Lactobacillus casei LC2W]
gi|385824415|ref|YP_005860757.1| transcription-repair coupling factor [Lactobacillus casei BD-II]
gi|409998319|ref|YP_006752720.1| transcription-repair coupling factor [Lactobacillus casei W56]
gi|190713759|emb|CAQ67765.1| Transcription-repair coupling factor (TRCF) [Lactobacillus casei
BL23]
gi|205270976|emb|CAP07849.1| transcriptional-repair coupling factor [Lactobacillus casei BL23]
gi|327383550|gb|AEA55026.1| Transcription-repair coupling factor [Lactobacillus casei LC2W]
gi|327386742|gb|AEA58216.1| Transcription-repair coupling factor [Lactobacillus casei BD-II]
gi|406359331|emb|CCK23601.1| Transcription-repair-coupling factor [Lactobacillus casei W56]
Length = 1174
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 14/614 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++ G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 495 LKPGDYVVHVNHGIGQYTGME-TLEVDG-VHRDYITIVYRNNDKLFIPVDQLN-LVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ + K P +++KL W++ K K I+ + +L++LY R +K + P +
Sbjct: 551 VSADGKTP-SVNKLGGA-EWQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F A+FPY TPDQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + G
Sbjct: 609 HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQA +L PT +LA+QHFD + ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+V
Sbjct: 668 KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T + + + AI+ E++RGGQVFY+ R++ +E +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P + AHGQ QLE + F GA +L+ T I+E+G+D+ NANT+I+++
Sbjct: 847 LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ A +RL A++ ELG GF++A +
Sbjct: 907 DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKNFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + S +ID+ +
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP++Y+ +E+ +A + + +E L ++G P + LL +++R
Sbjct: 1025 LPTDYVADSRQKIELYKRIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRF 1082
Query: 752 AADIGITKIYASGK 765
A + + +G+
Sbjct: 1083 ADLAWVNHVTKAGQ 1096
>gi|418006194|ref|ZP_12646155.1| transcription-repair coupling factor [Lactobacillus casei UW1]
gi|410544356|gb|EKQ18685.1| transcription-repair coupling factor [Lactobacillus casei UW1]
Length = 1186
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 384/614 (62%), Gaps = 14/614 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++ G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 495 LKPGDYVVHVNHGIGQYTGME-TLEVDG-VHRDYITIVYRNNDKLFIPVDQLN-LVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ + K P +++KL W++ K K I+ + +L++LY R +K + P +
Sbjct: 551 VSADGKTP-SVNKLGGA-EWQKTKRKVAARIEDIADELIDLYAKREAEKGFAFGPDDDLQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F A+FPY TPDQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F + G
Sbjct: 609 HKFEAEFPYPETPDQLRSAKEIKHDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIDYG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQA +L PT +LA+QHFD + ERF+ +P IKVGLLSRFQ+ + +E + +K+G ++I+V
Sbjct: 668 KQAAILVPTTILAQQHFDTMKERFADFP-IKVGLLSRFQTAHQNKETIKGLKNGTIDIVV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T + + + AI+ E++RGGQVFY+ R++ +E +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P + AHGQ QLE + F GA +L+ T I+E+G+D+ NANT+I+++
Sbjct: 847 LEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ A +RL A+++ ELG GF++A +
Sbjct: 907 DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + S +ID+ +
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGIKSAEKTDAEIDLGLEAY 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP++Y+ +E+ +A + + +E L ++G P + LL +++R
Sbjct: 1025 LPTDYVADSRQKIELYKRIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRF 1082
Query: 752 AADIGITKIYASGK 765
A + + +G+
Sbjct: 1083 ADLAWVNHVTKAGQ 1096
>gi|403382800|ref|ZP_10924857.1| hypothetical protein PJC66_23572 [Paenibacillus sp. JC66]
Length = 1173
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 236/552 (42%), Positives = 358/552 (64%), Gaps = 18/552 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIGK+VGI + + + +Y+ I YA G +P+ Q ++ +Y
Sbjct: 488 LKVGDYVVHVNHGIGKYVGI--GTLEINGIHKDYLHILYAGGDKLSVPIDQID-LIQKY- 543
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP---KNP 269
+ E K P+ + KL T W R K K + +++ + +L++LY R Q P YP P
Sbjct: 544 VGAEEKEPK-VYKLGGTE-WNRVKGKVRTSVKDIADELIQLYAAR--QSTPGYPFTKDTP 599
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF FPY+ TPDQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 600 YQQEFEGLFPYDETPDQLRAIEEIKKDM-EKAYPMDRLLCGDVGYGKTEVAIRAAFKAAI 658
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQ VL PT +LA+QH++ ERFS YP + +LSRF+S+ E+ E + IK+G ++I
Sbjct: 659 DGKQVAVLVPTTILAQQHYETFKERFSDYP-FNIQVLSRFRSRKEQNEAIKGIKNGSVDI 717
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH +L + V + +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL+++
Sbjct: 718 VIGTHRILSADVQFKDLGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMS 777
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
+ G RD S+I TPP R P++T++ S+ + AI+ EL R GQV+Y+ R++G+++
Sbjct: 778 MLGVRDLSVIETPPENRFPVQTYVVEHSQVLIREAIERELSREGQVYYLYNRVQGIQQMA 837
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+ + P +A+AHGQ ++LE T+ F G +L+ T+I+E+G+DI N NT+IV
Sbjct: 838 EQISMLVPEARVAVAHGQMSEQELERTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVH 897
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG GF++A
Sbjct: 898 DADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLSEVAEKRLQAIKEFTELGSGFKIA 957
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHC----VISVPYKSVQID 685
+D+ IRG G + G +Q G + +VG DL+ +ML E ++K + V + ++D
Sbjct: 958 MRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIAKKKKEMGGEPVEQAEQWNTKLD 1017
Query: 686 ININPRLPSEYI 697
++++ LPS+YI
Sbjct: 1018 LHLDAYLPSDYI 1029
>gi|374605016|ref|ZP_09677961.1| transcription-repair coupling factor [Paenibacillus dendritiformis
C454]
gi|374389401|gb|EHQ60778.1| transcription-repair coupling factor [Paenibacillus dendritiformis
C454]
Length = 1176
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 245/625 (39%), Positives = 384/625 (61%), Gaps = 16/625 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH+ GIGK++GI + + + +Y+ I YA G +PV Q ++ RY
Sbjct: 491 LKIGDYVVHQNHGIGKYIGI--GTLEINGIHKDYLHIMYAGGDKLSVPVDQL-HLIQRY- 546
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAI 271
+ +E K P+ + KL T W + K K + +++ + DL++LY R + K+ P
Sbjct: 547 VSSEEKEPK-IYKLGGTE-WTKVKNKVRSSVKDIADDLIKLYAARQASSGYAFDKDTPEQ 604
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPYE T DQ +A +++++D+ E PMDRL+CGDVG+GKTEVA+RA F G
Sbjct: 605 QEFEDLFPYEETRDQLRAIVEIKKDM-ELPRPMDRLLCGDVGYGKTEVAVRAAFKAAIEG 663
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT +LA+QH++ ERF+ YP + ++SRF+S+ ++ E + +K G +++++
Sbjct: 664 KQVAILVPTTILAQQHYETFRERFADYP-FNIQVMSRFRSRKDQNETIKGLKTGVVDVVI 722
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL VV+ LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++
Sbjct: 723 GTHRLLSQDVVFKELGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML 782
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T++ +S V AI+ EL R GQV+++ R++G+ + D
Sbjct: 783 GVRDLSVIETPPENRFPVQTYVLEYSDSLVREAIERELSRDGQVYFLFNRVQGIHQMADH 842
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
++ P +A++HGQ +LE+T+ F G +L+ T+I+E+G+DI N NT+IV D
Sbjct: 843 IKMLVPEAKVAVSHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA 902
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +
Sbjct: 903 DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLNEVAEKRLQAIKEFTELGSGFKIAMR 962
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISVPYKSVQIDIN 687
D+ IRG G + G +Q G + +VG DL+ +ML + ++K +D + S ID+N
Sbjct: 963 DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLADEINKRKAELDGVAIRDQQELSTLIDLN 1022
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
I+ LP YI +E+ + A + + + + L ++G+ P ++ LL
Sbjct: 1023 IDAYLPPNYIYDSIQKIEIYKKV--AGLASLEEVEELRDELIDRFGEPPLAVLQLLAVAR 1080
Query: 748 VRRMAADIGITKIYASGKMVGMKTN 772
++ A G+ I G V MK +
Sbjct: 1081 LKLHAKQYGLESIVQRGDTVTMKVH 1105
>gi|218134568|ref|ZP_03463372.1| hypothetical protein BACPEC_02471 [[Bacteroides] pectinophilus ATCC
43243]
gi|217989953|gb|EEC55964.1| transcription-repair coupling factor [[Bacteroides] pectinophilus
ATCC 43243]
Length = 1177
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 251/627 (40%), Positives = 380/627 (60%), Gaps = 24/627 (3%)
Query: 139 YNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMA 197
YNG D L GDYVVH+ G+G + GI K +V+ + +Y+ IEY+ G
Sbjct: 493 YNGKA----IADFNELAIGDYVVHENYGLGIYRGIEKIEVE---GIERDYIKIEYS-GTD 544
Query: 198 KLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR 257
L + + + + ++P+ L+KL+ + W + K+K K A++++ DL+ELY R
Sbjct: 545 TLYILATQLDVLQKYAGADARKPK-LNKLN-SQEWGKTKSKVKTAVEQVAKDLVELYAKR 602
Query: 258 LKQKRPPYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGK 316
++ + ++ EF FPYE T DQ A D + D+ + MDRLICGDVG+GK
Sbjct: 603 QNEQGFQFGEDTVWQREFEEMFPYEETSDQLAAIEDTKHDMQSTKI-MDRLICGDVGYGK 661
Query: 317 TEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKE 376
TEVA+RA F V GKQ L PT +LA+QHF+ +R +P +KV +LSRF++ E +
Sbjct: 662 TEVAIRAAFKAVQDGKQVAYLVPTTILAQQHFNTFEQRMKDFP-VKVAMLSRFRTPKEIK 720
Query: 377 EHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLT 436
+ + ++ G ++I++GTH LL V Y +LGLL++DEEQRFGV KEKI K +VDVLT
Sbjct: 721 QTIADLRKGMVDIVIGTHRLLSKDVEYKDLGLLIIDEEQRFGVSHKEKIKKLKENVDVLT 780
Query: 437 LSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVF 496
LSATPIPRTL+++L G RD S++ PP +R+PI+T ++ + E V AI EL RGGQV+
Sbjct: 781 LSATPIPRTLHMSLVGIRDMSVLEEPPVDRMPIQTFVTEQNDEMVREAINRELARGGQVY 840
Query: 497 YVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556
YV R++ ++E +QQ P ++A AHGQ + LE M F G I +L+ T I+E+
Sbjct: 841 YVYNRVRNIDEAASRIQQLVPDANVAYAHGQMDEKTLEAIMYDFINGDIDVLVSTTIIET 900
Query: 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAAL 616
GLDI N NT+I++D + GL+QLYQLRGRVGR+++ A+A+L Y +L + A +RL A+
Sbjct: 901 GLDISNVNTMIIEDAENLGLSQLYQLRGRVGRSNRTAYAFLLYRRGKMLKEVAEKRLHAI 960
Query: 617 EECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS 676
E ELG GF++A KD+ IRG G + GE Q G + VG DL+ +ML E+++++ +
Sbjct: 961 REFTELGSGFKIAMKDLEIRGAGNVLGEAQHGHMAAVGYDLYCKMLNEAVNEL-KGISNG 1019
Query: 677 VPYKSVQIDININPRLPSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYG 733
+++V +D+N++ +PS YI +E+ + E + EQ M + L ++G
Sbjct: 1020 ADFETV-VDLNVDAFIPSTYIRSEAQKLEIYKRIAAIETSDEQ-----MDMQDELTDRFG 1073
Query: 734 KEPYSMEILLKKLYVRRMAADIGITKI 760
P+S LL ++ +A + KI
Sbjct: 1074 DLPHSANNLLTIALIKSVAHKADVRKI 1100
>gi|57866056|ref|YP_187737.1| transcription-repair coupling factor [Staphylococcus epidermidis
RP62A]
gi|420166934|ref|ZP_14673611.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM088]
gi|420196114|ref|ZP_14701893.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM021]
gi|420215505|ref|ZP_14720771.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH05005]
gi|420218229|ref|ZP_14723326.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH05001]
gi|420221252|ref|ZP_14726203.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH04008]
gi|81819455|sp|Q5HRQ2.1|MFD_STAEQ RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|57636714|gb|AAW53502.1| transcription-repair coupling factor [Staphylococcus epidermidis
RP62A]
gi|394231847|gb|EJD77469.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM088]
gi|394262269|gb|EJE07045.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM021]
gi|394282191|gb|EJE26400.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH05005]
gi|394284606|gb|EJE28711.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH05001]
gi|394284963|gb|EJE29056.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH04008]
Length = 1169
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 392/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ+ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGVELIKDKGKSI 1101
>gi|406668956|ref|ZP_11076245.1| transcription-repair coupling factor [Facklamia ignava CCUG 37419]
gi|405584853|gb|EKB58719.1| transcription-repair coupling factor [Facklamia ignava CCUG 37419]
Length = 1173
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 247/616 (40%), Positives = 386/616 (62%), Gaps = 16/616 (2%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYAD-GMAKLPVKQASRM 207
D L GDYVVH GIG++ GI+ ++ + T + V IEY D LPV+ S+
Sbjct: 490 DYNELNIGDYVVHPIHGIGRYTGIETIEINGNHT---DAVAIEYRDQARILLPVENISQ- 545
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK 267
L +Y + +E+ P+ L+KL T W++ K + + ++ + +L++LY R +++ + +
Sbjct: 546 LQKY-VASESTTPK-LNKLG-GTEWKKTKARVQSQVEDIADELIQLYAQREQERGFAFAQ 602
Query: 268 N-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
+ P +F FPY T DQ ++ ++++D+ E + PMDRL+ GDVG+GKTEVALRAIF
Sbjct: 603 DTPEQYKFEDDFPYPETEDQLRSIQEIKQDM-ESDRPMDRLLVGDVGYGKTEVALRAIFK 661
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
V GKQ L PT VLA+QH+ + ERF+ +P +VGLLSRF SKA+++E +D +K G
Sbjct: 662 AVMDGKQVAFLVPTTVLAQQHYHTIIERFADWP-FEVGLLSRFVSKAKQQETIDGLKTGA 720
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
++I+VGTH +L VV+N+LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL
Sbjct: 721 ISIVVGTHRILSKDVVFNDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTL 780
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
++++ G RD SLI TPP R P++T++ + + SAI+ E+ RGGQVFY+ R+ ++
Sbjct: 781 HMSMIGVRDLSLIETPPNNRYPVQTYVMERNNGVIKSAIEREMARGGQVFYLYNRVASID 840
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
+Q P +AI+HGQ QLE + F +G +L+ T I+E+G+DI NANT+
Sbjct: 841 RKAQEIQDLVPEARVAISHGQMSEAQLENVLLDFIEGVYDVLVTTTIIETGIDIPNANTL 900
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
V D + GL+ LYQLRGRVGR + A+AYLFY LS+ + +RL A+ E ELG GF
Sbjct: 901 FVDDADRMGLSTLYQLRGRVGRTHRLAYAYLFYEPFKQLSEISEKRLNAIREFTELGSGF 960
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV--DEHCVISVPYKSVQI 684
+LA +D+ IRG G + G+QQ+G + +VG +L+ +ML +++ + ++ P ++
Sbjct: 961 KLAMRDLSIRGAGNLLGQQQSGFIDSVGYELYTQMLQQAIKRKRGGSSQLVDRPTSTLDW 1020
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
++ +PS+YI+ + + ++ Q+ + Q + L +YG+ P + L+
Sbjct: 1021 QFEMDAYIPSDYISDERQKVGIYKLVQRIDSQEAYV--QLQDELIDRYGEFPDPVSNLVD 1078
Query: 745 KLYVRRMAADIGITKI 760
++ A +IGIT+I
Sbjct: 1079 FALIKYYALEIGITQI 1094
>gi|168181008|ref|ZP_02615672.1| transcription-repair coupling factor [Clostridium botulinum NCTC
2916]
gi|226950995|ref|YP_002806086.1| transcription-repair coupling factor [Clostridium botulinum A2 str.
Kyoto]
gi|421834408|ref|ZP_16269459.1| transcription-repair coupling factor [Clostridium botulinum
CFSAN001627]
gi|182668078|gb|EDT80057.1| transcription-repair coupling factor [Clostridium botulinum NCTC
2916]
gi|226842319|gb|ACO84985.1| transcription-repair coupling factor [Clostridium botulinum A2 str.
Kyoto]
gi|409744195|gb|EKN42856.1| transcription-repair coupling factor [Clostridium botulinum
CFSAN001627]
Length = 1168
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 251/676 (37%), Positives = 408/676 (60%), Gaps = 31/676 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+ GD+VVH GIG F GIK ++Q + +E ++ ++D +PV+Q M+ RY
Sbjct: 501 LKPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIY--HSDDKLYVPVEQLD-MVQRY- 556
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+ +E K+P+ +SKL ++ W + K K K +I+++ DL++LY R K Y +
Sbjct: 557 IGSEGKKPK-VSKLG-SSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGYKYSDDTVWQ 614
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F +FPYE TPDQ A D++RD+ E PMDRL+CGDVG+GKTEVA+RA F V G
Sbjct: 615 KQFEEEFPYEETPDQLLAIEDIKRDM-ESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDG 673
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ +RF +P I V ++SRF++ +E++ + IK G+++I++
Sbjct: 674 KQVAFLVPTTILAQQHYNNFKQRFWDFP-ITVDVISRFRTLSEQKATIKSIKEGNVDILI 732
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + + +LGLL++DEEQRFGVK KEK+ + K +VDVLTLSATPIPRTL+++L
Sbjct: 733 GTHRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLV 792
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP ER P++T++ ++ + + +I E+ RGGQ+++V R++ + E +
Sbjct: 793 GVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVYNRVESIHEMASY 852
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+ + P + IAHGQ ++LE + F + ILI T I+E+G+DI+N NT+I+ D
Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDA 912
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR ++ A+ YL Y +L++ A +RL A+++ ELG GF++A K
Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDIN 687
D+ IRG G + G Q G + ++G DL+ ML +++ +D+ V +++
Sbjct: 973 DLEIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPV------ETSVELK 1026
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
I+ +P+ YI +E+ + ++ + M E L ++ P S+ L+ Y
Sbjct: 1027 IDAYIPNTYIKDETQKIEVYKKIASIDSKEEF--MDIEEELEDRFSDIPISVYNLMNISY 1084
Query: 748 VRRMAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEV-----HRNSLTFEG 798
+R + + I +I V K+++ +K+ K+++D + EV + ++ +
Sbjct: 1085 IRSLGKKVDIEEIKEISNEVVFQFEDKSSLREKIVKIIMDKYSKEVAFKLNEKPAIGYNI 1144
Query: 799 DQIKAELLLELPREQL 814
IK E LL + R L
Sbjct: 1145 KNIKKEQLLPIMRNFL 1160
>gi|300774874|ref|ZP_07084737.1| transcription-repair coupling factor [Chryseobacterium gleum ATCC
35910]
gi|300506689|gb|EFK37824.1| transcription-repair coupling factor [Chryseobacterium gleum ATCC
35910]
Length = 1122
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 248/627 (39%), Positives = 376/627 (59%), Gaps = 27/627 (4%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVF-IEYADGMAKLPVKQASRML 208
D SL+ GDY+ H GIGKF+G+ V+ ++ I+ F + Y +G + +
Sbjct: 431 DLMSLKIGDYIAHIDHGIGKFMGL---VKVNNDGKIQECFKLTYKNGDLLYVSIHSLHKI 487
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PK 267
+YN P+ R LSKL T W+ K K K ++++ DL++LY R K Y P
Sbjct: 488 SKYNGPD--GREVVLSKLGSPT-WKSLKQKTKAKVKQIAFDLIKLYAQRKTAKGFAYTPD 544
Query: 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
+ E A F YE TPDQ+KA +DV+RD+ E +T MDRL+CGDVGFGKTEVA+RA F
Sbjct: 545 SYLQNELEASFIYEDTPDQEKATIDVKRDM-EADTVMDRLVCGDVGFGKTEVAIRAAFKA 603
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
+ GKQ VL PT +LA QH+ ER +P + V ++RF++ +K E L+ +K+G +
Sbjct: 604 ATDGKQVAVLVPTTILAFQHYRSFKERLKDFP-VNVAYVNRFRTAKQKSETLEALKNGKV 662
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+II+GTH L+ S V + +LGLL++DEE +FGV K+K+ + K +VD LTL+ATPIPRTL
Sbjct: 663 DIIIGTHQLVSSSVKFKDLGLLIIDEEHKFGVSVKDKLKTLKNNVDTLTLTATPIPRTLQ 722
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+L RD S+I TPPP R P++T L F++E + A+ YEL R GQV+++ RI+ L++
Sbjct: 723 FSLMAARDLSVIKTPPPNRQPVETQLIGFNEETLRDAVSYELQRDGQVYFINNRIENLKD 782
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+Q+ P + HGQ +QLE+ + F +G +L+ T IVESG+D+ NANTI
Sbjct: 783 IAGLIQRLVPDARVITGHGQMEGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANTIF 842
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ D Q+FG+A L+Q+RGRVGR++++A YL P +++ A +RL A+E+ +LG GFQ
Sbjct: 843 INDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSGFQ 902
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY-------- 679
+A KD+ IRG G + G +Q+G + +G + + +++ E+L ++ + +
Sbjct: 903 IAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDADFENLFENEEDRQK 962
Query: 680 -----KSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYG 733
K V ID ++ LP YI++ E + + + AE E D L QF L ++G
Sbjct: 963 LFKSVKDVNIDTDLELMLPDSYISNTEERLLLYQKIAEINNEAD---LHQFELELIDRFG 1019
Query: 734 KEPYSMEILLKKLYVRRMAADIGITKI 760
P LLK + ++ +AA+IG KI
Sbjct: 1020 PLPKEAINLLKSVSLKWLAAEIGFEKI 1046
>gi|406667822|ref|ZP_11075574.1| Transcription-repair-coupling factor [Bacillus isronensis B3W22]
gi|405384337|gb|EKB43784.1| Transcription-repair-coupling factor [Bacillus isronensis B3W22]
Length = 1170
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 249/618 (40%), Positives = 380/618 (61%), Gaps = 13/618 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRMLYRYN 212
++SGDYVVH GIGK++GI+ V + +Y+ + Y D +PV Q ++ RY
Sbjct: 497 IKSGDYVVHVHHGIGKYIGIETLVVNGTHQ--DYLHVRYREDDKLYVPVDQIE-LIQRY- 552
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+P+ K P+ L KL T W++ K A+Q + DL++LY R +K + P +
Sbjct: 553 VPSGEKEPK-LHKLGGT-EWKKTHKKVSNAVQDIADDLIKLYAKREAEKGYAFSPDSDEQ 610
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
F A FPYE T DQ + +V++D+ ERE PMDRL+CGDVG+GKTEVA+RA F + G
Sbjct: 611 RGFEAAFPYEETEDQLRTIAEVKKDM-ERERPMDRLVCGDVGYGKTEVAIRAAFKAILDG 669
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ +S+RF Y I VGLLSRF+SK ++ E L +K G ++I++
Sbjct: 670 KQVAFLVPTTILAQQHYETISKRFEDYA-INVGLLSRFRSKKQQTETLKGLKEGTVDIVI 728
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L VVY +LGLL+VDEEQRFGV KEKI + +VDVLTL+ATPIPRTL++++
Sbjct: 729 GTHRILSKDVVYQDLGLLIVDEEQRFGVTHKEKIKQLRTNVDVLTLTATPIPRTLHMSMV 788
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T++ + V AI+ E+ RGGQVFY+ R++ + ++
Sbjct: 789 GVRDLSVIETPPQNRFPVQTYVMEHNGALVREAIEREMARGGQVFYLYNRVEDITRRVEE 848
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q P +A AHG+ +LE + F +G +L+ T I+E+G+DI N NT+IV D
Sbjct: 849 IQMLVPDARVAFAHGKMTEAKLESVILSFIEGEYDVLVTTTIIETGVDIPNVNTLIVHDA 908
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +
Sbjct: 909 DRMGLSQLYQLRGRVGRSNRIAYAYFMYERDKVLTEVAEQRLQAVKEFTELGSGFKIAMR 968
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + ++G DL+ +ML E++ + V + V+I ++++
Sbjct: 969 DLSIRGAGNLLGAQQHGFIDSIGFDLYSQMLEEAVEE-RRTGVKREEKQDVEIMLHVDAY 1027
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
+P YI ++M KA E+ I + L+ ++G P E L++ ++
Sbjct: 1028 IPDAYIPDGYQKIQMYKRI-KAMER-IEDYSGIIDELQDRFGDLPVETERLMRVARMKVW 1085
Query: 752 AADIGITKIYASGKMVGM 769
A + + I ++V +
Sbjct: 1086 AKEANVLSIKEKQQVVSI 1103
>gi|20808914|ref|NP_624085.1| transcription-repair coupling factor [Thermoanaerobacter
tengcongensis MB4]
gi|20517574|gb|AAM25689.1| Transcription-repair coupling factor - superfamily II helicase
[Thermoanaerobacter tengcongensis MB4]
Length = 1169
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 261/648 (40%), Positives = 395/648 (60%), Gaps = 21/648 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L G YVVH GIGK+ GI+ ++ D + +Y+ I YA G + +PV+Q ++ +Y
Sbjct: 501 LEVGSYVVHVNYGIGKYEGIE-KIKVDGVIR-DYLKIVYAGGDVLFVPVEQLD-LVQKYV 557
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
P T P L+KL W R K K K A + + DL+ELY R K + P P
Sbjct: 558 GP--TDNPPKLNKLG-GGEWIRAKRKAKKAAEDLAKDLIELYAKRQMAKGHAFSPDTPWQ 614
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF QFPYE T DQ + +++ D+ E++ PMDRL+CGDVG+GKTEVALRA F V+ G
Sbjct: 615 KEFEDQFPYEETEDQLRCIKEIKEDM-EKDKPMDRLLCGDVGYGKTEVALRAAFKAVADG 673
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA QH+ ERF ++P +K+ +LSRF++ E+ + + + G ++I+V
Sbjct: 674 KQVAFLCPTTILAYQHYTNFLERFKEFP-VKIEMLSRFRTPKEQAQIIKGLADGTIDIVV 732
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL + V + +LGLL++DEEQRFGV KEKI K ++DVLTLSATPIPRTL+++L
Sbjct: 733 GTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPIPRTLHMSLI 792
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ PP +R P++T++ F++E + AI E+ RGGQV++V R++G+E+ +F
Sbjct: 793 GIRDMSILENPPEDRFPVETYVVEFNEELIKDAILREVGRGGQVYFVYNRVQGIEKMANF 852
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+++ P IA+AHGQ +LE+ M F +G +L+ T I+E+GLDI N NTIIV D
Sbjct: 853 IKELVPNCRIAVAHGQMEENKLEQVMVDFLKGEYDVLVTTTIIETGLDIPNVNTIIVYDA 912
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GLAQLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E E G GF++A +
Sbjct: 913 DKLGLAQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEFGSGFKIAMR 972
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV--QIDININ 689
D+ IRG G + G +Q G + VG DL+ ++L E++ + P + + ID+ ++
Sbjct: 973 DLEIRGAGNLLGAEQHGHIDAVGYDLYLKLLEEAIRNLKGEQ----PKEEITTTIDLKVS 1028
Query: 690 PRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+ S YI +EM + A + +D +M+ E L ++G P +E LL Y+
Sbjct: 1029 AYIDSSYIEDENLRLEMYKKIASIESRED---MMEVAEELIDRFGDYPKPVEALLDIAYI 1085
Query: 749 RRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTF 796
+ +A+ + + +I V +K V ++ M E ++ +LTF
Sbjct: 1086 KAVASKLHMVEISEKSSGVILKFKDKDSVDMETVEKMVRE-YKGNLTF 1132
>gi|420223783|ref|ZP_14728672.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH08001]
gi|420231038|ref|ZP_14735714.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH04003]
gi|394286747|gb|EJE30732.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH08001]
gi|394295718|gb|EJE39357.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH04003]
Length = 1169
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 392/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ+ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGVELIKDKGKSI 1101
>gi|420186402|ref|ZP_14692471.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM040]
gi|394252193|gb|EJD97232.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM040]
Length = 1169
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 247/628 (39%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A GI I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGIELIKDKGKSI 1101
>gi|420164597|ref|ZP_14671324.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM095]
gi|420169409|ref|ZP_14676009.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM087]
gi|394231299|gb|EJD76932.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM087]
gi|394231338|gb|EJD76970.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM095]
Length = 1169
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTTKEIRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGVELIKDKGKSI 1101
>gi|420208040|ref|ZP_14713521.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM008]
gi|394274783|gb|EJE19191.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM008]
Length = 1169
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEKSPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGVELIKDKGKSI 1101
>gi|73663562|ref|YP_302343.1| transcription-repair coupling factor [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|123761497|sp|Q49V12.1|MFD_STAS1 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|72496077|dbj|BAE19398.1| transcription-repair coupling factor [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 1170
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/626 (40%), Positives = 396/626 (63%), Gaps = 19/626 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L+ GDYVVH G+G+++G+ + + V +Y+ ++Y G +L PV Q
Sbjct: 490 KIKSYQDLKVGDYVVHVHHGVGRYLGV--ETLEVGGVHKDYIKLQYK-GTDQLFVPVDQM 546
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL T W++ K K + +++ M +L+ELY + ++
Sbjct: 547 DQ-VQKY-VASEDKSPK-LNKLGGT-EWKKTKAKVQQSVEDMADELIELY--KAREMSVG 600
Query: 265 YPKNPAIAE---FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
Y P AE F FPYE TPDQ K+ ++++D+ E E PMDRL+CGDVG+GKTEVA+
Sbjct: 601 YKFGPDTAEQNDFEIDFPYELTPDQSKSIEEIKQDM-EIERPMDRLLCGDVGYGKTEVAV 659
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F V GKQ L PT +LA+QH++ + ER +P I+V L+SRF++ E +E +
Sbjct: 660 RAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-IEVQLISRFRTTKEVKETKEG 718
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+K G ++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I S K +VDVLTL+ATP
Sbjct: 719 LKSGFVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKSLKNNVDVLTLTATP 778
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +
Sbjct: 779 IPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNK 838
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
++ + E + LQ P +I +AHGQ R LEETM F I++ T I+E+G+D+
Sbjct: 839 VQSIYEKREQLQMLMPDANIGVAHGQMNERDLEETMLSFINHEYDIIVTTTIIETGVDVP 898
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +LS+ A +RL A++E E
Sbjct: 899 NANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLSETAEDRLQAIKEFTE 958
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS 681
LG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++
Sbjct: 959 LGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKAEKQDAPE 1018
Query: 682 VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
++I++NI+ LP+EYI + ++ +E+ + K + LM + L ++ P +E
Sbjct: 1019 IEIELNIDAYLPAEYIPNEQSKIEIYKKLRKIESE--TQLMDVKDELIDRFNDYPIEVER 1076
Query: 742 LLKKLYVRRMAADIGITKIYASGKMV 767
LL+ + ++ A G+T I GK V
Sbjct: 1077 LLEMMEIKVHALHAGVTLIKDVGKQV 1102
>gi|420233644|ref|ZP_14738251.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH051668]
gi|394299774|gb|EJE43305.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH051668]
Length = 1169
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A+ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALDRELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ+ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGVELIKDKGKSI 1101
>gi|126653275|ref|ZP_01725386.1| transcription-repair coupling factor [Bacillus sp. B14905]
gi|126589949|gb|EAZ84078.1| transcription-repair coupling factor [Bacillus sp. B14905]
Length = 1169
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 248/616 (40%), Positives = 379/616 (61%), Gaps = 13/616 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRMLYRYN 212
++ GDYVVH GIGK++G++ ++ + T +Y+ I Y AD +PV+Q ++ +Y
Sbjct: 497 IKPGDYVVHVHHGIGKYIGVE-TLEVNGTHK-DYLHIRYRADDKLYVPVEQID-LIQKY- 552
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E + P+ L KL W++ K K A+Q + DL++LY R +K + P N
Sbjct: 553 VASEDREPK-LHKLG-GAEWKKAKAKVSSAVQDIADDLIKLYAKREAEKGYAFTPDNDDQ 610
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
F A F YE T DQ ++ ++V+RD+ ERE PMDRL+CGDVG+GKTEVA+RA F + G
Sbjct: 611 RNFEAMFAYEETEDQLRSIVEVKRDM-ERERPMDRLVCGDVGYGKTEVAIRAAFKAIQDG 669
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF + I VGLLSRF+SK E+ L +K G ++I++
Sbjct: 670 KQVAFLVPTTILAQQHYETIRERFQDFA-INVGLLSRFRSKKEQTATLKGLKEGQVDIVI 728
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L +++ +LGLL+VDEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++
Sbjct: 729 GTHRILSKDLLFQDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIPRTLHMSMV 788
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T++ S V AI+ E+ RGGQVFY+ R++ + ++
Sbjct: 789 GVRDLSVIETPPANRFPVQTYVMEHSGALVREAIEREMARGGQVFYLYNRVEDMARKVEE 848
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q P I AHG+ +LE + F +G +L+ T I+E+G+DI N NT+IV D
Sbjct: 849 IQVLVPEARIGHAHGKMSESELESVILSFLEGDYDVLVTTTIIETGVDIPNVNTLIVHDA 908
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GLAQLYQLRGRVGR+++ A+AY Y +L+D A +RL A++E ELG GF++A +
Sbjct: 909 DRMGLAQLYQLRGRVGRSNRVAYAYFMYQRDKVLTDVAEQRLQAIKEFTELGSGFKIAMR 968
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + +VG DL+ +ML E++ + + V ++I ++++
Sbjct: 969 DLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLQEAIEE-RQTGVKKEEKPEIEILLSVDAY 1027
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
+P YI ++M KA +Q + + E L ++G P E LL+ ++
Sbjct: 1028 IPDAYIPDGYQKIQMYKRI-KAMDQ-VEEYGEIMEELEDRFGDLPIETERLLRVARMKVW 1085
Query: 752 AADIGITKIYASGKMV 767
G+ + K++
Sbjct: 1086 GLGAGVVSVKDKQKLI 1101
>gi|417647520|ref|ZP_12297356.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU144]
gi|329723937|gb|EGG60462.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU144]
Length = 1166
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 247/628 (39%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 486 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 538
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 539 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 594
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 595 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 653
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 654 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 712
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 713 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 772
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 773 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 832
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 833 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 892
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 893 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 952
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 953 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1012
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1013 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1070
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + V+ A G+ I GK +
Sbjct: 1071 ERLLDIVEVKVHALHAGVELIKDKGKSI 1098
>gi|282875433|ref|ZP_06284305.1| transcription-repair coupling factor [Staphylococcus epidermidis
SK135]
gi|281295790|gb|EFA88312.1| transcription-repair coupling factor [Staphylococcus epidermidis
SK135]
Length = 1169
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGVELIKDKGKSI 1101
>gi|452854118|ref|YP_007495801.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|452078378|emb|CCP20128.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 1177
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 239/563 (42%), Positives = 365/563 (64%), Gaps = 14/563 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQVGDYVVHVNHGIGKYLGI--ETLEIKGIHKDYLNIHYQ-GSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLG-GSEWKRVKKKVENSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + +F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQRQFESAFPYQETEDQLRSIQEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIADGKQVALLVPTTILAQQHYETIMERFQDYP-INIGLLSRFRTRKESNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R+
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVD 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P +A AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + S +++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDIPKSEQFET-E 1022
Query: 684 IDININPRLPSEYINHLENPMEM 706
IDI ++ +P YI + ++M
Sbjct: 1023 IDIELDAYIPENYIQDGKQKIDM 1045
>gi|418603847|ref|ZP_13167225.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU041]
gi|418606409|ref|ZP_13169687.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU057]
gi|418610278|ref|ZP_13173394.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU065]
gi|418611284|ref|ZP_13174375.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU117]
gi|418616846|ref|ZP_13179769.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU120]
gi|418623723|ref|ZP_13186424.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU125]
gi|418626901|ref|ZP_13189495.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU126]
gi|418628379|ref|ZP_13190926.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU127]
gi|374404817|gb|EHQ75781.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU065]
gi|374406824|gb|EHQ77704.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU041]
gi|374408047|gb|EHQ78887.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU057]
gi|374820434|gb|EHR84522.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU120]
gi|374823722|gb|EHR87715.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU117]
gi|374829757|gb|EHR93553.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU125]
gi|374831141|gb|EHR94888.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU126]
gi|374837844|gb|EHS01406.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU127]
Length = 1166
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 392/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 486 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 538
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 539 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 594
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 595 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 653
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 654 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 712
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 713 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 772
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 773 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 832
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ+ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 833 NKVQSIYEKREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 892
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 893 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 952
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 953 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1012
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1013 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1070
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1071 ERLLDIVEIKVHALHAGVELIKDKGKSI 1098
>gi|168183619|ref|ZP_02618283.1| transcription-repair coupling factor [Clostridium botulinum Bf]
gi|237797000|ref|YP_002864552.1| transcription-repair coupling factor [Clostridium botulinum Ba4 str.
657]
gi|182673263|gb|EDT85224.1| transcription-repair coupling factor [Clostridium botulinum Bf]
gi|229263299|gb|ACQ54332.1| transcription-repair coupling factor [Clostridium botulinum Ba4 str.
657]
Length = 1168
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 244/646 (37%), Positives = 397/646 (61%), Gaps = 26/646 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+ GD+VVH GIG F GIK ++Q + +E ++ ++D +PV+Q M+ RY
Sbjct: 501 LKPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIY--HSDDKLYVPVEQLD-MVQRY- 556
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+ +E K+P+ ++KL ++ W + K K K +I+++ DL++LY R K Y +
Sbjct: 557 IGSEGKKPK-VNKLG-SSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGYKYSDDTVWQ 614
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F +FPYE TPDQ A D++RD+ E PMDRL+CGDVG+GKTEVA+RA F V G
Sbjct: 615 KQFEEEFPYEETPDQLLAIEDIKRDM-ESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDG 673
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ +RFS +P I V ++SRF++ +E++ + IK G+++I++
Sbjct: 674 KQVAFLVPTTILAQQHYNNFKQRFSDFP-ITVDVISRFRTLSEQKATIKSIKEGNVDILI 732
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + + +LGLL++DEEQRFGVK KEK+ + K +VDVLTLSATPIPRTL+++L
Sbjct: 733 GTHRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLV 792
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP ER P++T++ ++ + + +I E+ RGGQ+++V R++ + E +
Sbjct: 793 GVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVYNRVESIHEMASY 852
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+ + P + IAHGQ ++LE + F + ILI T I+E+G+DI+N NT+I+ D
Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILIATTIIETGMDIKNVNTMIIYDA 912
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR ++ A+ YL Y +L++ A +RL A+++ ELG GF++A K
Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDIN 687
D+ IRG G + G Q G + ++G DL+ ML +++ +D+ V +++
Sbjct: 973 DLEIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPV------ETSVELK 1026
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
I+ +P+ YI +E+ + ++ + M E L ++ P S+ L+ Y
Sbjct: 1027 IDAYIPNTYIKDETQKIEVYKKIASIDSKEEF--MDVEEELEDRFSDIPISVYNLMNISY 1084
Query: 748 VRRMAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEV 789
+R + + I +I V K+++ +K+ K+++D + EV
Sbjct: 1085 IRSLGKKLDIEEIKEISNEVVFQFEDKSSLKEKIVKLIMDKYSKEV 1130
>gi|417912752|ref|ZP_12556435.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU109]
gi|341657117|gb|EGS80813.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU109]
Length = 1166
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 486 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 538
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 539 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 594
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 595 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 653
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 654 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 712
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 713 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 772
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 773 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 832
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 833 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 892
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 893 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 952
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 953 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1012
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1013 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1070
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1071 ERLLDIVEIKVHALHAGVELIKDKGKSI 1098
>gi|420173838|ref|ZP_14680326.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM067]
gi|420182191|ref|ZP_14688331.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM049]
gi|394239358|gb|EJD84802.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM067]
gi|394250433|gb|EJD95621.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM049]
Length = 1169
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKERSPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGVELIKDKGKSI 1101
>gi|420226238|ref|ZP_14731059.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH06004]
gi|394292462|gb|EJE36205.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH06004]
Length = 1169
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 392/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ+ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGVELIKDKGKSI 1101
>gi|293366145|ref|ZP_06612832.1| transcription-repair coupling factor [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417658410|ref|ZP_12308041.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU045]
gi|417909714|ref|ZP_12553448.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU037]
gi|291319739|gb|EFE60098.1| transcription-repair coupling factor [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329737888|gb|EGG74116.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU045]
gi|341652648|gb|EGS76432.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU037]
Length = 1166
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 392/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 486 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 538
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 539 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 594
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 595 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 653
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 654 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 712
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 713 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 772
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 773 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 832
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ+ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 833 NKVQSIYEKREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 892
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 893 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 952
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 953 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1012
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1013 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1070
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1071 ERLLDIVEIKVHALHAGVELIKDKGKSI 1098
>gi|350566030|ref|ZP_08934739.1| transcription-repair coupling factor [Peptoniphilus indolicus ATCC
29427]
gi|348663181|gb|EGY79785.1| transcription-repair coupling factor [Peptoniphilus indolicus ATCC
29427]
Length = 1155
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 254/616 (41%), Positives = 381/616 (61%), Gaps = 20/616 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYR 210
L+ GDYVVH+ GIGK++G + +VQ +YV +EY G KL P++ +Y+
Sbjct: 488 LKVGDYVVHEAHGIGKYMGTDRLEVQGTQK---DYVILEYR-GEDKLFIPIENLDS-IYK 542
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA 270
Y + + TK P+ ++KL ++ W R K K + I+ + DL+ LY R K K + ++
Sbjct: 543 YVVGDGTK-PK-INKL-NSVEWSRTKQKVRKNIEDLADDLINLYATREKIKGYKFSEDTQ 599
Query: 271 I-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
+EF F YE T Q + ++++D+ E E PMDRL+C DVG+GKTEVALRA F +
Sbjct: 600 WQSEFEDAFIYEETEGQTSSIAEIKKDM-ESERPMDRLLCADVGYGKTEVALRAAFKAIM 658
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
KQ L PT +LA+QH++ + ERF +P +K+ LLSRF+S+A+ ++ L+ +K G ++I
Sbjct: 659 DSKQVAFLVPTTILAEQHYNTIVERFRDFP-VKIALLSRFRSRAQIKKDLEDLKDGFVDI 717
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
+VGTH LL V + +LGLL++DEEQRFGV+ KEK+ + K +VD LTL+ATPIPRTL ++
Sbjct: 718 VVGTHRLLSEDVKFKDLGLLIIDEEQRFGVRHKEKLKTLKKNVDTLTLTATPIPRTLQMS 777
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
+ G RD S+I PP ER P++T++ + V AI E++RGGQVFYV R++ +E M
Sbjct: 778 MIGIRDMSVIDEPPEERFPVQTYVLEHNPLMVREAIIKEIERGGQVFYVTNRVQEMELKM 837
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
L+ P +AHGQ R+LE+T F +G +LI + I+E+GLD+QNANTIIV
Sbjct: 838 AELKDLVPEASFTMAHGQMSERELEKTFVDFIKGEYDVLIASTIIETGLDVQNANTIIVT 897
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
+ + GL+QLYQLRGRVGR+++ A+AY Y L++ A +RL +++E E G G++LA
Sbjct: 898 EANRLGLSQLYQLRGRVGRSNRIAYAYFTYEKDVSLTEVATKRLKSIKEFTEFGSGYKLA 957
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
KD+ IRG G+I G +Q+G V ++G DL+ + L E+++K V V + Q+DI +N
Sbjct: 958 LKDLEIRGSGSILGSRQSGHVNSIGYDLYIKYLKEAVAKKRGEEVEEV--EDTQVDIKVN 1015
Query: 690 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQ-FTESLRRQYGKEPYSMEILLKKLYV 748
+P YI E +E+ +K A D Q + L +Y P + L+ +
Sbjct: 1016 SFIPHNYIMDNEQRLEIY---KKIAMIDSETEYQDLVDELIDRYSDVPEEVSNLMDISLI 1072
Query: 749 RRMAADIGITKIYASG 764
R A + GIT + SG
Sbjct: 1073 RNKARESGITSVMQSG 1088
>gi|418664884|ref|ZP_13226348.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU081]
gi|420170827|ref|ZP_14677384.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM070]
gi|420210556|ref|ZP_14715980.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM003]
gi|421608971|ref|ZP_16050180.1| transcription-repair coupling factor [Staphylococcus epidermidis
AU12-03]
gi|374409979|gb|EHQ80746.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU081]
gi|394239592|gb|EJD85030.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM070]
gi|394276083|gb|EJE20436.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM003]
gi|406655368|gb|EKC81798.1| transcription-repair coupling factor [Staphylococcus epidermidis
AU12-03]
Length = 1169
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGVELIKDKGKSI 1101
>gi|365875985|ref|ZP_09415510.1| transcription-repair coupling factor [Elizabethkingia anophelis Ag1]
gi|442588572|ref|ZP_21007383.1| transcription-repair coupling factor [Elizabethkingia anophelis R26]
gi|365756497|gb|EHM98411.1| transcription-repair coupling factor [Elizabethkingia anophelis Ag1]
gi|442561806|gb|ELR79030.1| transcription-repair coupling factor [Elizabethkingia anophelis R26]
Length = 1118
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/625 (39%), Positives = 373/625 (59%), Gaps = 24/625 (3%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVF-IEYADGMAKLPVKQASRML 208
D SL+ GDY+ H GIGKF+G+ V+ ++ ++ F + Y +G A +
Sbjct: 430 DLMSLKVGDYITHIDHGIGKFMGL---VKVNNNGKVQECFKLSYKNGDLLYVSIHALHKI 486
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PK 267
+YN P+ + LSKL ++AW+ K K K ++++ DL++LY R K Y P
Sbjct: 487 SKYNGPD--GKDIVLSKLG-SSAWKSLKQKTKARVKQIAFDLIKLYAQRKSAKGFAYSPD 543
Query: 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
E A F YE TPDQ+KA +DV+ D+ + +T MDRLICGDVGFGKTEVA+RA F
Sbjct: 544 GYMQNELEASFIYEDTPDQEKATMDVKADM-QADTVMDRLICGDVGFGKTEVAIRAAFKA 602
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
GKQ +L PT +LA QH+ ER +P ++V L+RF++ +K+E L+ + G +
Sbjct: 603 AVDGKQVALLVPTTILAFQHYRSFKERLKDFP-VEVSYLNRFRTAKQKKETLEGLASGKI 661
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH L+G+ V + +LGLL++DEE +FGV K+K+ + K ++D LTL+ATPIPRTL
Sbjct: 662 DIVIGTHQLVGASVKFKDLGLLIIDEEHKFGVAIKDKLKTMKTNIDTLTLTATPIPRTLQ 721
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+L RD S+I TPPP R P+ T L F++E + AI YEL R GQV+++ RI+ L+E
Sbjct: 722 FSLMAARDLSVIKTPPPNRQPVDTKLVGFNEEILRDAISYELQRDGQVYFINNRIENLKE 781
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+Q+ P + HGQ +QLE M F +G +L+ T IVESGLD+ NANTI
Sbjct: 782 IAGLIQRLVPDARVITGHGQMDGKQLEANMMDFMEGKYDVLVSTTIVESGLDVPNANTIF 841
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ D Q+FG+A L+Q+RGRVGR++++A YL P L+S + +RL A+E+ +LG GF
Sbjct: 842 INDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPMDLVSSDSRKRLEAIEQFSDLGSGFH 901
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV------------DEHCVI 675
+A KD+ IRG G + G Q+G + +G D + +++ E+L ++ +E +
Sbjct: 902 IAMKDLEIRGAGDLLGGDQSGFINEMGFDTYQKIMQEALEELKDEDMEGLFQNEEERKKL 961
Query: 676 SVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKE 735
K V ID ++ LP +Y+N E + + + A ++ L +F L+ ++G
Sbjct: 962 FNSVKDVNIDTDLELMLPDDYVNSTEERLLLYQKL--ADVRNATELNRFEYELKDRFGAL 1019
Query: 736 PYSMEILLKKLYVRRMAADIGITKI 760
P LLK + ++ +AADIG KI
Sbjct: 1020 PKEAINLLKSIELKWLAADIGFDKI 1044
>gi|373251530|ref|ZP_09539648.1| transcription-repair coupling factor [Nesterenkonia sp. F]
Length = 1204
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 259/708 (36%), Positives = 400/708 (56%), Gaps = 48/708 (6%)
Query: 147 YKVDPYSLRSGDYVVHKKVGIGKFV-------GIKFDVQKDSTVPIEYVFIEYADGMAKL 199
+ VDP +L GDYVVH++ GIG+FV G V+ + EY+ +EYA
Sbjct: 509 HAVDPLALSPGDYVVHEQHGIGQFVELVQRKVGSAQAVKAGTAGIREYLVLEYAASKRGG 568
Query: 200 PVKQASRMLYRYNLPNETKR-----PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELY 254
P R++ + ++ + +LSK+ + W + K K + A++++ +L+ LY
Sbjct: 569 P---KDRLMVPTDQLDQVSQYVGGDAPSLSKMGGSD-WAQTKKKARKAVREIAGELIRLY 624
Query: 255 LHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVG 313
R+ + + P P AE FP+ TPDQ DV+RD+ ERE PMDRLI GDVG
Sbjct: 625 AARMASRGHAFAPDTPWQAELEDAFPHPETPDQLTTIDDVKRDM-EREIPMDRLISGDVG 683
Query: 314 FGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKA 373
+GKTE+A+RA F V GKQ +L PT +LA QH++ +ERF+ +P + V LSRFQ+
Sbjct: 684 YGKTEIAVRAAFKAVQDGKQVSLLVPTTLLASQHYETFTERFAGFP-VTVRALSRFQTAK 742
Query: 374 EKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVD 433
E E LD + G +++++GTH LL S V + +LGL+++DEEQRFGV+ KE + + +VD
Sbjct: 743 ESREVLDGVHSGEIDVVIGTHRLLSSEVKFKDLGLVIIDEEQRFGVEHKEALKKLRTNVD 802
Query: 434 VLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGG 493
VL +SATPIPRTL +++ G R+ S ++TPP ER P+ T++ F+ ++V +AI+ EL R G
Sbjct: 803 VLAMSATPIPRTLEMSMAGIRETSTLATPPEERHPVLTYVGPFTDKQVSAAIRRELMREG 862
Query: 494 QVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI 553
QVF+V R+ +EE +++ P + +AHGQ +LE+ ++ F + +L+ T I
Sbjct: 863 QVFFVHNRVSSIEETAAKVRELVPEARVEVAHGQMSESRLEQIIQDFWEKRFDVLVSTTI 922
Query: 554 VESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERL 613
+E+GLDI NANT+IV +GL+QL+QLRGRVGR+ + A+AY YP + L + ALERL
Sbjct: 923 IETGLDISNANTLIVDRASTYGLSQLHQLRGRVGRSRERAYAYFLYPAEKPLGEVALERL 982
Query: 614 AALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHC 673
A+ ELG G QLA KD+ IRG G + G +Q+G + VG DL+ ++ E+++ D
Sbjct: 983 KAVAANNELGAGLQLAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYLRLVGEAVA--DYRG 1040
Query: 674 VISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYG 733
V+I++ ++ LP +Y +E + AA+ D + + R +YG
Sbjct: 1041 EAEERTTEVKIELPVDAHLPEDYAPGERLRLEGYRKL-AAADTD-EAIEEVVTEWRDRYG 1098
Query: 734 KEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMK-TNMNKKVFKMMIDSMTSEVHRN 792
+ P ++ L++ +R A IGI I GK + + +M +D M
Sbjct: 1099 EPPQAVANLVEVARLRNRARAIGIDDIGTQGKFIRFAPVEELPESRQMRLDRM------- 1151
Query: 793 SLTFEGDQIKAELLL--------------ELPREQLLNWIFQCLAELY 826
+ G QIK+ L EL +LL+W+ Q L ++
Sbjct: 1152 ---YPGSQIKSSLKAVLIPKPTTGGISGRELADAELLSWLDQVLTAIF 1196
>gi|417657893|ref|ZP_12307545.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU028]
gi|419770307|ref|ZP_14296389.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-250]
gi|419772650|ref|ZP_14298679.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-K]
gi|329733010|gb|EGG69349.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU028]
gi|383357352|gb|EID34825.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-250]
gi|383359095|gb|EID36530.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-K]
Length = 1166
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 486 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 538
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 539 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 594
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 595 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 653
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 654 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 712
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 713 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 772
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 773 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 832
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 833 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 892
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 893 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 952
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 953 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1012
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1013 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1070
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1071 ERLLDIVEIKVHALHAGVELIKDKGKSI 1098
>gi|416128130|ref|ZP_11597195.1| transcription-repair coupling factor [Staphylococcus epidermidis
FRI909]
gi|319399660|gb|EFV87914.1| transcription-repair coupling factor [Staphylococcus epidermidis
FRI909]
Length = 1166
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 486 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 538
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 539 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 594
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 595 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 653
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 654 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 712
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 713 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 772
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 773 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 832
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 833 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 892
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 893 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 952
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 953 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1012
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1013 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1070
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1071 ERLLDIVEIKVHALHAGVELIKDKGKSI 1098
>gi|418413369|ref|ZP_12986610.1| transcription-repair-coupling factor [Staphylococcus epidermidis
BVS058A4]
gi|410879131|gb|EKS26983.1| transcription-repair-coupling factor [Staphylococcus epidermidis
BVS058A4]
Length = 1169
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGVELIKDKGKSI 1101
>gi|389571463|ref|ZP_10161558.1| transcription-repair coupling factor [Bacillus sp. M 2-6]
gi|388428863|gb|EIL86653.1| transcription-repair coupling factor [Bacillus sp. M 2-6]
Length = 1177
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 249/644 (38%), Positives = 392/644 (60%), Gaps = 27/644 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQVGDYVVHINHGIGKYLGI--ETLEIGGIHKDYLNIHYQ-GSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLGGSD-WKRVKKKVESSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + +F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQRQFESAFPYQETDDQIRSIHEIKQDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ +L PT +LA+QHFD + +RF YP +K+ LSRF+++ E E L +K
Sbjct: 665 AFKAIADGKQVALLVPTTILAQQHFDTIMDRFQDYP-VKIAQLSRFRTRKETTETLKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G +++++GTH LL +VY +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIP
Sbjct: 724 NGTIDMVIGTHRLLSKDIVYKDLGLLIIDEEQRFGVTHKEKIKQMKANIDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P ++ AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVHDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + ++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGDTTAQEKFEP-E 1022
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ I+ +P YI+ + +EM + I + + + ++G+ P + L
Sbjct: 1023 IDLQIDAYIPDSYISDGKQKIEMYKQFRAIG--SIEERKELQDEMIDRFGEYPQEVADLF 1080
Query: 744 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTS 787
I K+YA + V + M K + ++ +D S
Sbjct: 1081 T----------IATMKVYAVQERVEL-IKMEKGIVRLTLDEKAS 1113
>gi|418324996|ref|ZP_12936207.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU071]
gi|365229058|gb|EHM70226.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU071]
Length = 1166
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 486 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 538
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 539 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 594
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 595 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 653
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 654 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 712
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 713 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 772
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 773 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 832
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 833 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 892
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 893 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 952
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 953 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1012
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1013 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1070
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1071 ERLLDIVEIKVHALHAGVELIKDKGKSI 1098
>gi|311070702|ref|YP_003975625.1| transcription-repair coupling factor [Bacillus atrophaeus 1942]
gi|419823434|ref|ZP_14346981.1| transcription-repair coupling factor [Bacillus atrophaeus C89]
gi|310871219|gb|ADP34694.1| transcription-repair coupling factor [Bacillus atrophaeus 1942]
gi|388472407|gb|EIM09183.1| transcription-repair coupling factor [Bacillus atrophaeus C89]
Length = 1177
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 238/563 (42%), Positives = 366/563 (65%), Gaps = 14/563 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQVGDYVVHVNHGIGKYLGI--ETLEINGIHKDYLNIHY-QGSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLGGS-EWKRVKKKVETSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + EF + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQREFESAFPYQETEDQLRSINEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ +L PT +LA+QH++ + ERF YP + VGLLSRF+++ E E + +K
Sbjct: 665 AFKAIADGKQVALLVPTTILAQQHYETIMERFQDYP-LTVGLLSRFRTRKEANETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G +++++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDMVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R+
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVD 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P +A AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + S +++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGDTSKSEQFET-E 1022
Query: 684 IDININPRLPSEYINHLENPMEM 706
ID+ ++ +P YI + ++M
Sbjct: 1023 IDVELDAYIPETYIQDGKQKIDM 1045
>gi|392958404|ref|ZP_10323916.1| transcription-repair coupling factor [Bacillus macauensis ZFHKF-1]
gi|391875574|gb|EIT84182.1| transcription-repair coupling factor [Bacillus macauensis ZFHKF-1]
Length = 1177
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 251/629 (39%), Positives = 389/629 (61%), Gaps = 22/629 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + V +Y+ I YA G KL PV+Q
Sbjct: 492 RIKSYSELKVGDYVVHVNHGIGKYLGI--ETLEIKGVHKDYLHIVYA-GNDKLYVPVEQI 548
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
++ + + +E K P+ + + W++ K+K + ++Q + DL++LY R
Sbjct: 549 DQV--QKFVGSEAKEPKIYALGGND--WKKVKSKVQSSVQDIADDLIKLYAEREASVGYG 604
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ K+ A EF + FPY+ T DQ +A ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 605 FNKDGAEQQEFESSFPYQETEDQLRAIDEIKKDM-ERSRPMDRLLCGDVGYGKTEVAIRA 663
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + GKQ L PT +LA+QH++ ERF+ +P I +G LSRF+S+ E+ E L +K
Sbjct: 664 AFKAIMDGKQVAFLVPTTILAQQHYETFRERFADFP-ITIGSLSRFRSRKEQNEVLKGLK 722
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I +GTH LL V Y++LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 723 KGTVDIAIGTHRLLSKDVEYHDLGLLIIDEEQRFGVSHKEKIKRLKSNVDVLTLTATPIP 782
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + V AI+ EL RGGQV+++ R++
Sbjct: 783 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYGASLVREAIERELGRGGQVYFLYNRVE 842
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E + + P V +A AHGQ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 843 SIERMAEQIASLIPDVKVAAAHGQMSENELEGVMLDFLEGNTDVLVSTTIIETGVDIPNV 902
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 903 NTLIVYDADKMGLSQLYQLRGRVGRSNRVAYAYFTYQRDKVLTEVAEKRLQAIKEFTELG 962
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS-- 681
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ E P K+
Sbjct: 963 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLQEAI----EERKGDAPKKAAV 1018
Query: 682 -VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
++++I ++ +PS YI + ++M + + A + + + +SL ++G P +E
Sbjct: 1019 IIEMNIEVDAYIPSTYIEDSKQKIDMYKQFK--AVSSLKDVDELHDSLIDRFGDYPVEVE 1076
Query: 741 ILLKKLYVRRMAADIGITKIYASGKMVGM 769
LL ++ +A + +I G +V M
Sbjct: 1077 CLLLIARIKELAKREHVDRIDQKGDIVTM 1105
>gi|251809809|ref|ZP_04824282.1| transcription-repair coupling factor [Staphylococcus epidermidis
BCM-HMP0060]
gi|251806677|gb|EES59334.1| transcription-repair coupling factor [Staphylococcus epidermidis
BCM-HMP0060]
Length = 1166
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 486 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 538
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 539 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 594
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 595 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 653
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 654 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 712
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 713 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 772
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 773 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 832
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 833 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 892
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 893 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 952
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 953 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1012
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1013 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1070
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1071 ERLLDIVEIKVHALHAGVELIKDKGKSI 1098
>gi|114570035|ref|YP_756715.1| transcription-repair coupling factor [Maricaulis maris MCS10]
gi|114340497|gb|ABI65777.1| transcription-repair coupling factor [Maricaulis maris MCS10]
Length = 1172
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 261/627 (41%), Positives = 376/627 (59%), Gaps = 28/627 (4%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASR 206
V+ SL GD V+H G+G+F+G+K +D+ P + + +EY+ G AKL PV+
Sbjct: 493 VEAGSLSPGDLVIHADHGLGRFIGLKTLPVQDA--PHDCIELEYS-GQAKLYLPVENIE- 548
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP 266
+L RY +ET + L KL AW+ RK K K ++ M L+++ RL +K P
Sbjct: 549 LLSRYGAESETAQ---LDKLGGV-AWQARKAKAKKRLRDMADQLIKIAAERLARKAEPIE 604
Query: 267 KNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
+ A EF + FPY T DQ A DV DL R PMDRLICGDVGFGKTEVALRA F
Sbjct: 605 TSSGAFDEFCSTFPYPETDDQLNAIDDVLTDLG-RGRPMDRLICGDVGFGKTEVALRAAF 663
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
V +G+Q ++APT +LA+QHF S+RF +P +KV LLSR + E + D + G
Sbjct: 664 VVALSGQQVAIVAPTTLLARQHFKTFSDRFRGWP-VKVRLLSRLVTAKEAKATRDELAAG 722
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
+ I++GTH+LL V + +LGLLVVDEEQ FGVK KE++ + V VLTL+ATPIPRT
Sbjct: 723 QVEIVIGTHALLAKTVKFRDLGLLVVDEEQHFGVKHKERLKELRSDVHVLTLTATPIPRT 782
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L LALTG RD S+I+TPP +RL ++T+++ F V A+ E RGGQ F+V+PRI L
Sbjct: 783 LQLALTGIRDLSIIATPPVDRLAVRTYVAPFDPVSVREALLREKYRGGQAFFVVPRITDL 842
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
EE FL+++ P V AHGQ + QLE+ M F +G +L+ T IVESG+DI ANT
Sbjct: 843 EETTRFLRESVPEVSFVAAHGQMAASQLEDIMTAFYEGRYDVLLSTTIVESGIDIPTANT 902
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
+I+ +FGL+QLYQLRGRVGR+ A+AYL P + +++ A +RL ++ LG G
Sbjct: 903 LIIHRADRFGLSQLYQLRGRVGRSKTRAYAYLTTPMRQKITESAEKRLKVMQSLDSLGAG 962
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV----DEHCVISVPYKS 681
F LA D+ +RG G + GE+Q+G + +VGV+L+ ML E+++ + DE + S
Sbjct: 963 FTLASHDLDLRGGGNLLGEEQSGHIRDVGVELYQSMLEEAVASLRSGGDE---LEEGDWS 1019
Query: 682 VQIDININPRLPSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
QI+ +P Y+ L+ +++ ++ + E++ + L ++G P
Sbjct: 1020 PQINAGGAVLIPDHYVPDLDVRLQLYRRLSSLDNKTERE-----GYAAELIDRFGPLPKE 1074
Query: 739 MEILLKKLYVRRMAADIGITKIYASGK 765
+E LL+ + V+ + GI K+ A K
Sbjct: 1075 VETLLRVVAVKALCKKAGIEKVDAGPK 1101
>gi|227501542|ref|ZP_03931591.1| possible transcription-repair coupling factor [Corynebacterium
accolens ATCC 49725]
gi|227077567|gb|EEI15530.1| possible transcription-repair coupling factor [Corynebacterium
accolens ATCC 49725]
Length = 1213
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 252/634 (39%), Positives = 376/634 (59%), Gaps = 22/634 (3%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQK-DSTVPIEYVFIEYADGMAKLPVKQAS 205
KVDP +L+ GD+VVH+ GIGKF+ + + +Q D T EY+ +EYA P Q
Sbjct: 502 KVDPLALKQGDFVVHETHGIGKFLKMAERTIQSGDETSRREYIVLEYAPSKRGQPADQLW 561
Query: 206 RMLYRYNLPNE---TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
+ +L ++ ++ P LSK+ + W+ K K + A++++ +L++LY R Q
Sbjct: 562 VPMDSLDLLSKYTGSESPH-LSKMGGSD-WKNTKKKARAAVREIAGELVDLYAKR--QAA 617
Query: 263 PPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
P + P NP AE FP+ T DQ A V+ D+ E PMDR++ GDVG+GKTEV
Sbjct: 618 PGHQFAPDNPWQAEMEDNFPFVETEDQMLAIDAVKEDM-ESTVPMDRVVVGDVGYGKTEV 676
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V G Q VL PT +LA+QHFD SER + +P +K+ +LSRF SK E E
Sbjct: 677 AIRAAFKAVQDGTQVAVLVPTTLLAQQHFDTFSERMAGFP-VKMAVLSRFTSKKEATEIF 735
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ G ++I+VGTH LL + V + NLGL+VVDEEQRFGV+ KE I + K SVDVLT+SA
Sbjct: 736 KGLADGSIDIVVGTHRLLQTGVHWKNLGLIVVDEEQRFGVEHKEHIKALKASVDVLTMSA 795
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL +++ G R+ S I TPP +R P+ T++ A+ ++V +AI+ EL R GQ F++
Sbjct: 796 TPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYEDKQVAAAIRRELLRDGQTFFIH 855
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
++ +E+ L+ P I +AHGQ LE+T++ F +L+CT IVE+GLD
Sbjct: 856 NKVSDIEKKARELRDLVPEARIVVAHGQMNEDVLEKTVQGFWDREYDVLVCTTIVETGLD 915
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
I NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP + L++ + +RLA + +
Sbjct: 916 IANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQN 975
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML------FESLSKVDEHC 673
+LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ F+SL++ +
Sbjct: 976 NDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAFKSLARGEAPA 1035
Query: 674 VISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYG 733
V K ++ID+ ++ +P YI+ +E+ + AA QD L E + ++G
Sbjct: 1036 VTDEGPKEIRIDLPVDAHIPESYIDSERLRLEVYRKL--AASQDNKDLAAAREEMEDRFG 1093
Query: 734 KEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 767
P +E LL +R A G+ I G V
Sbjct: 1094 PLPKEVERLLAVARLRHQARRAGVADITVQGTRV 1127
>gi|420212966|ref|ZP_14718308.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM001]
gi|394277468|gb|EJE21791.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM001]
Length = 1169
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPVNKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEKSPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGVELIKDKGKSI 1101
>gi|188584709|ref|YP_001916254.1| transcription-repair coupling factor [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179349396|gb|ACB83666.1| transcription-repair coupling factor [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 1196
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 257/654 (39%), Positives = 397/654 (60%), Gaps = 42/654 (6%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
KV Y L+ DYVVH+K GIGK++GIK + + +Y+ I+YA + +P +Q
Sbjct: 506 KVSDYRELQVEDYVVHEKHGIGKYMGIK--TLEVGGLYKDYLHIKYAGNDSLYVPTEQID 563
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
+ +Y + E K P+ S S + W++ K + K +++++ DL++LY R +K +
Sbjct: 564 E-IQKY-VGKEGKPPKLYSLGS--SEWQKVKQRVKSSVKELAEDLLKLYAERSSRKGYAF 619
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
++ P EF FPYE TPDQKKA +++ DL E E PMDRL+CGDVG+GKTEVA+RA
Sbjct: 620 SQDTPWQKEFEDYFPYELTPDQKKAISEIKEDL-ESEQPMDRLLCGDVGYGKTEVAMRAA 678
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP-DIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ VL PT +LA+QHF ERF+ YP DI+V +SRF S+ +++ + +K
Sbjct: 679 FKAVMEGKQVCVLVPTTILAQQHFQTFKERFAPYPVDIRV--ISRFSSQKDEKLVKEEMK 736
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G+ II+GTH LL V + +LGLL++DEEQRFGV+ KEKI K ++DVLT++ATPIP
Sbjct: 737 EGNAEIIIGTHKLLNKSVKFRDLGLLIIDEEQRFGVQHKEKIKMLKKNLDVLTMTATPIP 796
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL+++L G RD S+I TPP R P++T++ S + + A+ E+ R GQV+ V R+K
Sbjct: 797 RTLHMSLVGVRDLSVIETPPEGRFPVQTYVMEHSPQLIREAVNREISREGQVYVVHNRVK 856
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+ + + P + +AHGQ +QLE M F +G +L+ T+IVE+GLDIQN
Sbjct: 857 GINKVAKEVADWVPDAKVGVAHGQMPEKQLERVMLDFYEGKYDVLVSTSIVEAGLDIQNV 916
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTII+ + + GL+Q YQLRGRVGR+++ A+AYL Y +L+ +A +RL A++E ELG
Sbjct: 917 NTIIIYNADRMGLSQPYQLRGRVGRSNRMAYAYLTYQKDKVLTQEAEKRLKAIKEFTELG 976
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV-------------- 669
GF+LA +D+ IRG G I G +Q G + VG D++ +ML +++ ++
Sbjct: 977 SGFKLALRDLEIRGAGNILGPEQHGHIMAVGFDMYTKMLKDAIKEISQESQTQEETTKIQ 1036
Query: 670 DEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTES-- 727
D+ + P + V++++NIN LP+ YI+ E + + +A + ++E+
Sbjct: 1037 DDKTEVEKP-EEVKVELNINAYLPTTYISDHEQKITIYKKAR--------SINSYSEAND 1087
Query: 728 ----LRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKV 777
L+ ++G P ++ LL ++ +A + GI I G V + + +K+
Sbjct: 1088 LETELKDRFGSLPQEVKNLLDITRLKVLARETGIISITRQGYWVHLDLDPRQKI 1141
>gi|420198407|ref|ZP_14704119.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM020]
gi|420228656|ref|ZP_14733403.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH05003]
gi|394264486|gb|EJE09170.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM020]
gi|394294540|gb|EJE38217.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH05003]
Length = 1169
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 390/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEKSPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L L ++ P +
Sbjct: 1016 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKNELIDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGVELIKDKGKSI 1101
>gi|384263686|ref|YP_005419393.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387896581|ref|YP_006326877.1| transcription-repair coupling factor [Bacillus amyloliquefaciens Y2]
gi|380497039|emb|CCG48077.1| transcription-repair coupling factor (superfamily II helicase)
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387170691|gb|AFJ60152.1| transcription-repair coupling factor (superfamily II helicase)
[Bacillus amyloliquefaciens Y2]
Length = 1177
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 239/563 (42%), Positives = 365/563 (64%), Gaps = 14/563 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQVGDYVVHVNHGIGKYLGI--ETLEIKGIHKDYLNIHYQ-GSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLG-GSEWKRVKKKVENSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + +F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQRQFESAFPYQETEDQLRSIQEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIADGKQVALLVPTTILAQQHYETIMERFQDYP-INIGLLSRFRTRKESNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R+
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVD 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P +A AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + S +++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDIPKSEQFET-E 1022
Query: 684 IDININPRLPSEYINHLENPMEM 706
IDI ++ +P YI + ++M
Sbjct: 1023 IDIELDAYIPENYIQDGKQKIDM 1045
>gi|334338786|ref|YP_004543766.1| transcription-repair coupling factor [Desulfotomaculum ruminis DSM
2154]
gi|334090140|gb|AEG58480.1| transcription-repair coupling factor [Desulfotomaculum ruminis DSM
2154]
Length = 1169
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 250/603 (41%), Positives = 367/603 (60%), Gaps = 21/603 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGI-KFDV---QKDSTVPIEYVFIEYADGMAKLPVK 202
K++P + L++GDYVVH GIG+++G+ D+ QKD Y+ ++YA G KL V
Sbjct: 496 KMEPLADLKTGDYVVHVNHGIGRYLGLMTLDIGGIQKD------YLQLQYA-GEDKLYVP 548
Query: 203 QASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
+ L E P+ LS+L T W + K K + A++ M +L+ELY R K
Sbjct: 549 TDQVGFLQKYLGAEADHPK-LSRLG-GTEWSKAKAKVREAVRDMAQELLELYASRQTVKG 606
Query: 263 PPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
+ P P AEF + FPYE TPDQ +A +V+RD+ E++ PMDRL+CGDVG+GKTEVAL
Sbjct: 607 YRFLPDTPWQAEFESLFPYEETPDQVRAISEVKRDM-EKDRPMDRLLCGDVGYGKTEVAL 665
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F V KQ VL PT +LA+QH++ ERF+ YP +++ +LSRF++ E+ L
Sbjct: 666 RAAFKAVMDNKQVAVLVPTTILAQQHYNTFRERFANYP-VRIEMLSRFRTLKEQRLILAG 724
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+ ++I++GTH L+ +++ +LGLLVVDEEQRFGV KE++ + +VDVLTL+ATP
Sbjct: 725 LATREVDIVIGTHRLVQEDILFKDLGLLVVDEEQRFGVGHKERLKRLRKNVDVLTLTATP 784
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL+++L G RD SL+ TPP ER P++T++ + AI+ EL+RGGQV++V R
Sbjct: 785 IPRTLHMSLVGVRDTSLLETPPEERFPVQTYVLEEDPALIREAIRRELNRGGQVYFVHNR 844
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
+ L+ +LQ P IA+AHGQ +LE+ M +F +L+CT IVE+GLDI
Sbjct: 845 VVDLDRVAGWLQDLVPEARIAVAHGQMKEDELEQVMLEFMDNTYDVLVCTTIVETGLDIS 904
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
N NT+IV+D FGLAQLYQLRGRVGR ++ A+AY + +L++ + RL+A+ E E
Sbjct: 905 NVNTLIVKDADHFGLAQLYQLRGRVGRTNRLAYAYFLFRRDKVLTEISERRLSAIREFTE 964
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS 681
G GF++A +D+ IRG G I G +Q G + VG DL+ +L E++ + + P
Sbjct: 965 FGSGFKIAMRDLEIRGAGNILGAEQHGHIAEVGFDLYCRLLEEAVQEARGEK--TEPVID 1022
Query: 682 VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
I++ + +P Y+ +E+ AE + E L +YG P S++
Sbjct: 1023 TVIELPVEAYIPDAYVPDTNQKVELYRRLAALAEAS--EVEDLHEELVDRYGDLPESVQC 1080
Query: 742 LLK 744
LLK
Sbjct: 1081 LLK 1083
>gi|429762585|ref|ZP_19294973.1| transcription-repair coupling factor [Anaerostipes hadrus DSM 3319]
gi|429181405|gb|EKY22568.1| transcription-repair coupling factor [Anaerostipes hadrus DSM 3319]
Length = 1173
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 251/645 (38%), Positives = 387/645 (60%), Gaps = 16/645 (2%)
Query: 157 GDYVVHKKVGIGKFVGIKFDVQKDSTVPIE--YVFIEYADGMAKLPVKQASRMLYRYNLP 214
GDYVVH+K G+G + GI +K +T +E Y+ IEY G + A + +Y
Sbjct: 507 GDYVVHEKHGVGIYRGI----EKITTDGVEKDYISIEYQGGDNLFILASALDQIAKYASA 562
Query: 215 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 273
N ++P+ L KL W++ KT+ K ++ + +L++LY R ++ Y K+ E
Sbjct: 563 N-ARKPK-LHKLG-GNEWKKTKTRVKGQVKDIAEELVQLYALRQAKEGYVYDKDSVWQKE 619
Query: 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 333
F FPY+ T DQ A D +RD+ E + MDRLICGDVG+GKTEVA+RA F V GKQ
Sbjct: 620 FEELFPYDETQDQLNAIDDTKRDM-ESKKIMDRLICGDVGYGKTEVAIRAAFKAVDNGKQ 678
Query: 334 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 393
L PT +LA+QH++ ++RF YP I V ++SRF + E++E ++ +K+G +++++GT
Sbjct: 679 VAYLVPTTILAQQHYNTFAQRFHDYP-ITVRMMSRFCTAKEQKETIEGLKNGTVDVVIGT 737
Query: 394 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 453
H LL + Y NLGLLV+DEEQRFGV KEKI + K VDVL+LSATPIPRTL+++L G
Sbjct: 738 HRLLSKDMQYKNLGLLVIDEEQRFGVTHKEKIKTMKKDVDVLSLSATPIPRTLHMSLIGI 797
Query: 454 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 513
RD S++ PP +R I+T++ +++E V A+ E+ RGGQV+YV R+ + E LQ
Sbjct: 798 RDMSVLEEPPHDRRAIQTYVMEYNEELVKEAVYREMTRGGQVYYVYNRVNNIAEVTAELQ 857
Query: 514 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 573
+ P +A AHGQ R+LEE M F I +L+ T I+E+GLDI N NT+I+ D Q
Sbjct: 858 RLLPDAKVAFAHGQMKERELEEIMMGFMNHEIDVLVSTTIIETGLDIPNVNTMIIHDANQ 917
Query: 574 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 633
GL+QLYQLRGRVGR+++ A A+L Y +LL + A +RL A+ E +LG G+++A +D+
Sbjct: 918 LGLSQLYQLRGRVGRSNRNAFAFLMYKKNTLLKETAEKRLQAIREFTDLGSGYKIAMRDL 977
Query: 634 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 693
IRG G + G+ Q+G + VG DL+ +ML E++ ++ + + +D++IN +P
Sbjct: 978 EIRGAGNLLGQAQSGHMEAVGYDLYCKMLNEAVLRLKGELKDEDEFDTT-LDLDINAFIP 1036
Query: 694 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 753
S Y+ + +E+ +D + T+ L ++G+ P ++ LL Y++ +A
Sbjct: 1037 STYVYNEYQKLELYKRISSIESED--EMEDMTDELIDRFGEMPKAVHNLLYVAYLKSLAH 1094
Query: 754 DIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG 798
+T + G+ V + + V I ++ E R L+F+
Sbjct: 1095 HAYMTDVKQKGEKVSFEMKPDAAVDVEKIPAILEEYKR-ELSFQA 1138
>gi|385267081|ref|ZP_10045168.1| transcription-repair coupling factor [Bacillus sp. 5B6]
gi|385151577|gb|EIF15514.1| transcription-repair coupling factor [Bacillus sp. 5B6]
Length = 1177
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 239/563 (42%), Positives = 365/563 (64%), Gaps = 14/563 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQVGDYVVHVNHGIGKYLGI--ETLEIKGIHKDYLNIHYQ-GSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLG-GSEWKRVKKKVENSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + +F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQRQFESAFPYQETEDQLRSIQEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIADGKQVALLVPTTILAQQHYETIMERFQDYP-INIGLLSRFRTRKESNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R+
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVD 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P +A AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + S +++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDIPKSEQFET-E 1022
Query: 684 IDININPRLPSEYINHLENPMEM 706
IDI ++ +P YI + ++M
Sbjct: 1023 IDIELDAYIPENYIQDGKQKIDM 1045
>gi|418577116|ref|ZP_13141243.1| transcription-repair coupling factor [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379324396|gb|EHY91547.1| transcription-repair coupling factor [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 1170
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 254/626 (40%), Positives = 396/626 (63%), Gaps = 19/626 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L+ GDYVVH G+G+++G+ + + V +Y+ ++Y G +L PV Q
Sbjct: 490 KIKSYQDLKVGDYVVHVHHGVGRYLGV--ETLEVGGVHKDYIKLQYK-GTDQLFVPVDQM 546
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL T W++ K K + +++ M +L+ELY + ++
Sbjct: 547 DQ-VQKY-VASEDKSPK-LNKLGGT-EWKKTKAKVQQSVEDMADELIELY--KAREMSVG 600
Query: 265 YPKNPAIAE---FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
Y P AE F FPYE TPDQ K+ ++++D+ E E PMDRL+CGDVG+GKTEVA+
Sbjct: 601 YKFGPDTAEQNDFEIDFPYELTPDQSKSIEEIKQDM-EIERPMDRLLCGDVGYGKTEVAV 659
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F V GKQ L PT +LA+QH++ + ER +P I+V L+SRF++ E +E +
Sbjct: 660 RAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-IEVQLISRFRTTKEVKETKEG 718
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+K G ++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I S K +VDVLTL+ATP
Sbjct: 719 LKSGFVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKSLKNNVDVLTLTATP 778
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL++++ G RD S+I TPP R P++T++ + + A++ E+ R GQVFY+ +
Sbjct: 779 IPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALEREISRDGQVFYLYNK 838
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
++ + E + LQ P +I +AHGQ R LEETM F I++ T I+E+G+D+
Sbjct: 839 VQSIYEKREQLQMLMPDANIGVAHGQMNERDLEETMLSFINHEYDIIVTTTIIETGVDVP 898
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +LS+ A +RL A++E E
Sbjct: 899 NANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLSETAEDRLQAIKEFTE 958
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS 681
LG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++
Sbjct: 959 LGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGVKAEKQDAPE 1018
Query: 682 VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
++I++NI+ LP+EYI + ++ +E+ + K + LM + L ++ P +E
Sbjct: 1019 IEIELNIDAYLPAEYIPNEQSKIEIYKKLRKIESE--TQLMDVKDELIDRFNDYPIEVER 1076
Query: 742 LLKKLYVRRMAADIGITKIYASGKMV 767
LL+ + ++ A G+T I GK V
Sbjct: 1077 LLEMMEIKVHALHAGVTLIKDVGKQV 1102
>gi|297243627|ref|ZP_06927558.1| transcription-repair coupling factor [Gardnerella vaginalis AMD]
gi|296888378|gb|EFH27119.1| transcription-repair coupling factor [Gardnerella vaginalis AMD]
Length = 1202
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 247/628 (39%), Positives = 379/628 (60%), Gaps = 20/628 (3%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVP-----IEYVFIEYADGMAKLPVKQ 203
+D L+ GD+VVH++ GIG+FVG+K Q++ V EY+ IEYA P +
Sbjct: 522 IDLMELKPGDFVVHEQHGIGRFVGMK---QRNIAVSGGSATREYLVIEYAPSKRNAPNDK 578
Query: 204 ASRMLYRYNLPNE---TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
+ +L ++ + P+ L+KL + W + K K K + ++ +L++LY R +
Sbjct: 579 LFIPTDQLDLVSKYIGAEIPK-LNKLGGSD-WAQTKAKAKKHVHEIAENLIKLYSARQQS 636
Query: 261 KRPPYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
+ + K+ P E FPY+ T DQ +V+ D+ E+ PMDRLICGDVGFGKTE+
Sbjct: 637 RGFAFSKDTPWQKELEDAFPYQETADQLTTIDEVKADM-EKPIPMDRLICGDVGFGKTEI 695
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
ALRA F V KQ +VL PT +L +QH++ + RF +P +KV +SRFQ+ E EE L
Sbjct: 696 ALRAAFKAVQDSKQVVVLVPTTLLVQQHYETFTNRFEGFP-VKVAAMSRFQTSKEIEETL 754
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
++ G +++++GTH LL + + +LGL+++DEEQRFGV+ KE + + + +VDVL+LSA
Sbjct: 755 AGLQDGSIDVVIGTHKLLNPSIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSA 814
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL +A+TG R+ S ++TPP +RLP+ T++ A+ +V + IK EL RGGQVFYV
Sbjct: 815 TPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYDNSQVAACIKRELLRGGQVFYVH 874
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
R++ + +Q+ P V +AIAHG+ +QL+ + F I +L+CT I+E+GLD
Sbjct: 875 NRVEDISSVASKIQELVPDVRVAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIIETGLD 934
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
I NANT+IV +FGL+QL+QLRGRVGR + A+AY Y ++ Q+ +RL+ + +
Sbjct: 935 ISNANTLIVDHADRFGLSQLHQLRGRVGRGHERAYAYFLYDPSKPMTQQSHDRLSTIAQH 994
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
LG GF +A KD+ +RG G + G++Q+G + VG DL+ M+ E++ K E V
Sbjct: 995 TALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEAVEKYKEPE--RVEP 1052
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
V ID+ + LP +YI + + + + AA +D L + + L ++G P
Sbjct: 1053 VCVTIDLPVEASLPVDYI--ASDKLRLEAYRKLAAAKDNSDLRELHDELLDRFGNPPEEF 1110
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E L +R A +IGIT+I + GK V
Sbjct: 1111 ESLCDVARLRFKAREIGITQISSQGKSV 1138
>gi|154684574|ref|YP_001419735.1| hypothetical protein RBAM_000640 [Bacillus amyloliquefaciens FZB42]
gi|394994189|ref|ZP_10386917.1| transcription-repair coupling factor [Bacillus sp. 916]
gi|429503588|ref|YP_007184772.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
subsp. plantarum AS43.3]
gi|154350425|gb|ABS72504.1| Mfd [Bacillus amyloliquefaciens FZB42]
gi|393804965|gb|EJD66356.1| transcription-repair coupling factor [Bacillus sp. 916]
gi|429485178|gb|AFZ89102.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
subsp. plantarum AS43.3]
Length = 1177
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 239/563 (42%), Positives = 365/563 (64%), Gaps = 14/563 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQVGDYVVHVNHGIGKYLGI--ETLEIKGIHKDYLNIHYQ-GSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLG-GSEWKRVKKKVENSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + +F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQRQFESAFPYQETEDQLRSIQEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIADGKQVALLVPTTILAQQHYETIMERFQDYP-INIGLLSRFRTRKESNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R+
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVD 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P +A AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + S +++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDIPKSEQFET-E 1022
Query: 684 IDININPRLPSEYINHLENPMEM 706
IDI ++ +P YI + ++M
Sbjct: 1023 IDIELDAYIPENYIQDGKQKIDM 1045
>gi|347754139|ref|YP_004861703.1| transcription-repair coupling factor [Candidatus Chloracidobacterium
thermophilum B]
gi|347586657|gb|AEP11187.1| transcription-repair coupling factor (mfd) [Candidatus
Chloracidobacterium thermophilum B]
Length = 1221
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 260/646 (40%), Positives = 378/646 (58%), Gaps = 16/646 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDS-TVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+ GD+VVH GIG+F+G++ VQ D T P E + +EYAD +L V L +
Sbjct: 553 LKVGDFVVHVNHGIGRFLGLQ-QVQVDHRTPPCEVMVLEYAD-QQRLSVPVERLDLVQKF 610
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAI 271
ET PR L KL + AW + K + K A++ M +L+ LY R L Q P P P
Sbjct: 611 SSAETSTPR-LDKLGGS-AWAKTKARAKRAMRDMTEELLRLYAERQLVQGVPCAPDTPWQ 668
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPYE T DQ A D++RDL E PMDRL+CGDVGFGKTEVA+RA F VV
Sbjct: 669 QEFEDAFPYELTRDQATALADIKRDL-ESPVPMDRLLCGDVGFGKTEVAMRAAFKVVMEN 727
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
+Q VL+PT VLA QH ERF+ +P + + ++SRF++ E + L G ++I++
Sbjct: 728 RQVAVLSPTTVLAFQHTKTFRERFASFP-VTIEMVSRFRTAKEIADVLARTARGEVDILI 786
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGL+++DEEQRFGV KEK+ + VDVLTLSATPIPRTL LAL
Sbjct: 787 GTHRLLSKDVTFKHLGLVIIDEEQRFGVAHKEKLKQLRRKVDVLTLSATPIPRTLNLALA 846
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP +RLPI T ++ FS+ + SAI+ EL RGGQVF+V R++ + +
Sbjct: 847 GLRDMSVIETPPRDRLPIHTVVAQFSENVIRSAIETELARGGQVFFVHNRVESIFTIAEL 906
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I + HGQ ++LE M +F + +L+ T I+E+G+DI ANTI++
Sbjct: 907 IQRLAPAARIGVGHGQMGEKELEAVMMRFVNHELDVLVSTTIIENGIDIPLANTIVINHA 966
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
Q+GLAQLYQLRGRVGR+++ A AYL P ++ LS A +RLAA+ E +LG GF++A
Sbjct: 967 DQYGLAQLYQLRGRVGRSNRRAFAYLLIPPETELSSVARQRLAAIREFSDLGSGFRIAAL 1026
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDINI--N 689
D+ +RG G + G QQ+G + ++G DL+ +L E++ ++ + + +Q IN+ +
Sbjct: 1027 DLELRGAGNLLGGQQSGHLDSIGFDLYCRLLDETVRELRGMPI----EEDIQTAINLRMD 1082
Query: 690 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
R+P YI + + ++ D L + L +YG P + L + +R
Sbjct: 1083 IRIPETYIADVGQRLRTYKRI--SSAADDAALEALGQELDDRYGPRPPQVIALFEYARLR 1140
Query: 750 RMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLT 795
A+ +GI + G + ++ + + + +EV LT
Sbjct: 1141 HRASALGILSLDWDGSTLSVRFADKPHIDVAALTRLVAEVPGARLT 1186
>gi|348027062|ref|YP_004766867.1| transcription-repair coupling factor [Megasphaera elsdenii DSM 20460]
gi|341823116|emb|CCC74040.1| transcription-repair coupling factor [Megasphaera elsdenii DSM 20460]
Length = 1094
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/620 (41%), Positives = 381/620 (61%), Gaps = 14/620 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L+ GDYVVH+ GIG+++GIK ++ D V +Y+ I YA + +P Q S +L RY
Sbjct: 424 LKPGDYVVHEVHGIGRYIGIK-TIEMDG-VHKDYLEIHYAGKDILYVPTDQLS-LLQRY- 479
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAI 271
+ NE P+ L K+ + W++ + K + +I + L+ LY R + Q P P
Sbjct: 480 IGNEGDTPK-LQKMGGSD-WQKTRAKAQKSITDLAEKLVALYAKREVVQGYAFPPDTPFQ 537
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPYE T DQ KA D++ + ER TPMD L+CGDVGFGKTEVA+RAIF V+AG
Sbjct: 538 KEFEEAFPYEETEDQLKAVRDIKASM-ERPTPMDCLVCGDVGFGKTEVAMRAIFKAVTAG 596
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT VL++QHF ERF + + V +L+RF+S EK++ L G +++++
Sbjct: 597 KQVAVLVPTTVLSQQHFQTFMERFGPF-GVHVDVLNRFRSYKEKKDILARTLTGDIDVLI 655
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTHSLL +V + +LGLLVVDEEQRFGV QKEK ++ ++DVL+LSATPIPRTL+++L
Sbjct: 656 GTHSLLNKKVKFKDLGLLVVDEEQRFGVAQKEKWKAWAANIDVLSLSATPIPRTLHMSLV 715
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
R+ +I TPP +R P++T+++ + V AI E RGGQVF+V R+ +E+ D
Sbjct: 716 NLREMCVIETPPTDRFPVQTYVTEYDARIVSDAIMREKRRGGQVFFVYNRVATIEKMKDQ 775
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQ P V I IAHGQ LE M F +G +L+C+++VE+GLD+ NANTII+ D
Sbjct: 776 LQALLPDVTIGIAHGQMAGSLLESVMFDFYEGKYDVLLCSSLVENGLDVANANTIIIYDA 835
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQ+RGRVGR+ + A+AY Y +LS+ A +RL A++E ELG GF++A +
Sbjct: 836 DHFGLSQLYQMRGRVGRSHRMAYAYFLYRRDKVLSEVAEKRLQAIKEFTELGSGFKIAMR 895
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G +Q G++ +VG ++ ML ++++K ++ P ++I+++
Sbjct: 896 DLEIRGAGNLLGREQHGNIASVGFAMYCHMLEDAIAKAQTGKDVAPPPPETVMEIHVDAF 955
Query: 692 LPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+ +YI + +EM A ++++++ L Q L +YGK +E LL+ R
Sbjct: 956 IDDDYIQNGGQKIEMYQRLAVLSSKEELAGLRQ---ELADRYGKPSQPVEKLLQVTETRL 1012
Query: 751 MAADIGITKIYASGKMVGMK 770
A G+ I ++ +K
Sbjct: 1013 DAKAQGLVLIAQKKDVLELK 1032
>gi|289551698|ref|YP_003472602.1| transcription-repair coupling factor [Staphylococcus lugdunensis
HKU09-01]
gi|289181229|gb|ADC88474.1| Transcription-repair coupling factor [Staphylococcus lugdunensis
HKU09-01]
Length = 1173
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/630 (38%), Positives = 392/630 (62%), Gaps = 23/630 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L+ GDYVVH G+G+++G++ DV +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLKVGDYVVHVHHGVGRYLGVETLEVGDVHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K P+ L+KL + W++ K K + +++ + +L+ LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIALYKEREMS 597
Query: 261 KRPPYPKNPAIAE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
+ ++ A + F FPYE TPDQ K+ +++ D+ E + PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQFGEDTAEQQAFELDFPYELTPDQAKSIEEIKADM-ELQKPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E +
Sbjct: 657 AIRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLVSRFRTAKEVRKTK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLSKDIRYKDLGLLIVDEEQRFGVRHKERIKTLKTNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P IA+AHGQ R LEETM F G IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPEASIAVAHGQMTERDLEETMLSFINGDYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLTETAEDRLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ +
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGITEETPDT 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
V++ +N++ LP+EYI + + +E+ + K + L + L ++ P +
Sbjct: 1016 PEVEMVLNLDAYLPAEYIQNEQAKIEIYKKLRKVENE--AQLDHIRDELMDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMVGM 769
E LL + ++ A G+T I GK V +
Sbjct: 1074 ERLLDSVQIKMHALRAGVTLIKDQGKTVDI 1103
>gi|283783133|ref|YP_003373887.1| transcription-repair coupling factor [Gardnerella vaginalis 409-05]
gi|283441749|gb|ADB14215.1| transcription-repair coupling factor [Gardnerella vaginalis 409-05]
Length = 1202
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 247/628 (39%), Positives = 378/628 (60%), Gaps = 20/628 (3%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVP-----IEYVFIEYADGMAKLPVKQ 203
+D L+ GD+VVH++ GIG+FVG+K Q++ V EY+ IEYA P +
Sbjct: 522 IDLMELKPGDFVVHEQHGIGRFVGMK---QRNIAVSGGSATREYLVIEYAPSKRNAPNDK 578
Query: 204 ASRMLYRYNLPNE---TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
+ +L ++ + P+ L+KL + W + K K K + ++ +L++LY R +
Sbjct: 579 LFIPTDQLDLVSKYIGAEIPK-LNKLGGSD-WAQTKAKAKKHVHEIAENLIKLYSARQQS 636
Query: 261 KRPPYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
+ + K+ P E FPY+ T DQ +V+ D+ E PMDRLICGDVGFGKTE+
Sbjct: 637 RGFAFSKDTPWQKELEDAFPYQETADQLTTIDEVKADM-ENPIPMDRLICGDVGFGKTEI 695
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
ALRA F V KQ +VL PT +L +QH++ + RF +P +KV +SRFQ+ E EE L
Sbjct: 696 ALRAAFKAVQDSKQVVVLVPTTLLVQQHYETFTNRFEGFP-VKVAAMSRFQTSKEIEETL 754
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
++ G +++++GTH LL + + +LGL+++DEEQRFGV+ KE + + + +VDVL+LSA
Sbjct: 755 AGLQDGSIDVVIGTHKLLNPSIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSA 814
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL +A+TG R+ S ++TPP +RLP+ T++ A+ +V + IK EL RGGQVFYV
Sbjct: 815 TPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYDNSQVAACIKRELLRGGQVFYVH 874
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
R++ + +Q+ P V +AIAHG+ +QL+ + F I +L+CT I+E+GLD
Sbjct: 875 NRVEDISSVASKIQELVPDVRVAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIIETGLD 934
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
I NANT+IV +FGL+QL+QLRGRVGR + A+AY Y ++ Q+ +RL+ + +
Sbjct: 935 ISNANTLIVDHADRFGLSQLHQLRGRVGRGHERAYAYFLYDPSKPMTQQSHDRLSTIAQH 994
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
LG GF +A KD+ +RG G + G++Q+G + VG DL+ M+ E++ K E V
Sbjct: 995 TALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEAVEKYKEPE--RVEP 1052
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
V ID+ + LP +YI + + + + AA +D L + + L ++G P
Sbjct: 1053 VCVTIDLPVEASLPVDYI--ASDKLRLEAYRKLAAAKDNSDLQELHDELLDRFGNPPEEF 1110
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E L +R A +IGIT+I + GK V
Sbjct: 1111 ESLCDVARLRFKAREIGITQISSQGKSV 1138
>gi|385785245|ref|YP_005761418.1| putative transcription-repair coupling factor [Staphylococcus
lugdunensis N920143]
gi|418416036|ref|ZP_12989238.1| transcription-repair-coupling factor [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|339895501|emb|CCB54830.1| putative transcription-repair coupling factor [Staphylococcus
lugdunensis N920143]
gi|410872946|gb|EKS20883.1| transcription-repair-coupling factor [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 1173
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 244/630 (38%), Positives = 391/630 (62%), Gaps = 23/630 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L+ GDYVVH G+G+++G++ DV +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLKVGDYVVHVHHGVGRYLGVETLEVGDVHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q ++ + + +E K P+ L+KL + W++ K K + +++ + +L+ LY R
Sbjct: 542 VDQMDQV--QKYVASEDKSPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIALYKEREMS 597
Query: 261 KRPPYPKNPAIAE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
+ ++ A + F FPYE TPDQ K+ +++ D+ E + PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQFGEDTAEQQAFELDFPYELTPDQAKSIEEIKADM-ELQKPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E +
Sbjct: 657 AIRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLVSRFRTAKEVRKTK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLSKDIRYKDLGLLIVDEEQRFGVRHKERIKTLKTNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P IA+AHGQ R LEETM F G IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPEASIAVAHGQMTERDLEETMLSFINGDYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLTETAEDRLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ +
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGITEETPDT 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
V++ +N++ LP+EYI + + +E+ + K + L + L ++ P +
Sbjct: 1016 PEVEMVLNLDAYLPAEYIQNEQAKIEIYKKLRKVENE--AQLDHIRDELMDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMVGM 769
E LL + ++ A G+T I GK V +
Sbjct: 1074 ERLLDSVQIKMHALRAGVTLIKDQGKTVDI 1103
>gi|420178951|ref|ZP_14685275.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM057]
gi|420181570|ref|ZP_14687767.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM053]
gi|394245639|gb|EJD90919.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM057]
gi|394245822|gb|EJD91094.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM053]
Length = 1169
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/628 (39%), Positives = 392/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q ++ + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMNQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPY+ TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGQDTAEQSAFEHDFPYQLTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGVELIKDKGKSI 1101
>gi|384110050|ref|ZP_10010891.1| transcription-repair coupling factor (mfd) [Treponema sp. JC4]
gi|383868392|gb|EID84050.1| transcription-repair coupling factor (mfd) [Treponema sp. JC4]
Length = 1201
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 254/663 (38%), Positives = 398/663 (60%), Gaps = 23/663 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDY+VH GIG F GI + K + +Y+ +EYAD A +P++Q + ++ RY
Sbjct: 535 LQPGDYIVHVNWGIGLFHGI--ERVKAAGNERDYIKLEYADKEYAFVPIEQVN-LVQRY- 590
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+ NE PR L ++ + AWE RK K + A++++ L++LY R +PK
Sbjct: 591 IGNEGDHPR-LDRIG-SKAWESRKAKARAAVEEIAQKLIDLYSRRQAAVGYAFPKETEWQ 648
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
F A FPYE TPDQ D++ D+ E+ PMDRLICGDVG+GKTE+A+RA F V G
Sbjct: 649 TAFEAAFPYEDTPDQITVTEDIKADM-EKPVPMDRLICGDVGYGKTEIAMRAAFKAVMGG 707
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ LAPT +LA+QH+D ERF +P +K+ +SRF S AE+++ L + G ++I+V
Sbjct: 708 KQVAFLAPTTILAEQHYDNCVERFKNFP-VKIERMSRFVSAAEQKKTLTRLALGEVDILV 766
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH ++ V + NLGL+++DEEQRFGVK KE++ K ++D LT+SATPIPRTL+++L
Sbjct: 767 GTHRIIQKDVKFKNLGLMIIDEEQRFGVKDKERLKVMKNNIDCLTMSATPIPRTLHMSLL 826
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD SL++TPP R PI+T + ++ +V AI+ E++RGGQ+FY+ R++ L +
Sbjct: 827 KIRDMSLLTTPPQNRQPIETVIDEYTDARVAHAIRQEIERGGQIFYLHNRVETLMDVRHK 886
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
++Q P V + +AHGQ S +L++ +F G +LI T I+E+G+DI N NTII+
Sbjct: 887 IEQIVPEVLVDVAHGQMTSTELDDIFHRFKMGGFHVLIATTIIENGIDIPNVNTIIIDRA 946
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+G++QLYQLRGRVGR+D++A+AYL YP+ LS+ A++RL + + ELG GF++A K
Sbjct: 947 DMYGVSQLYQLRGRVGRSDRQAYAYLLYPEHKALSEVAMKRLQVISDFTELGSGFKIAMK 1006
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV-DEHCVISVPYKSVQIDININP 690
DM IRG G + G Q+G+V +VG D++ +L ++++++ + + + V +++
Sbjct: 1007 DMEIRGAGNLLGRDQSGEVYSVGFDMYVRLLNDAVNRLMAQKDYDAAEHSDVIMELEYTG 1066
Query: 691 RLPSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
+P YI + + ME+ ++ AE D L ++G P + LL
Sbjct: 1067 FIPDTYIFNQQIKMEIYKKISSVTTDAEFD-----SVLGELNDRFGPIPEEVSSLLALAE 1121
Query: 748 VRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGD-QIKAELL 806
+R + + I+ + V ++ KKV + ID + +N T D Q+ +
Sbjct: 1122 IRILCKKLKISSLRERQGEVKVEF---KKVSDISIDKFMKLLQKNPGTIRLDPQLPNMIF 1178
Query: 807 LEL 809
L+L
Sbjct: 1179 LKL 1181
>gi|415709825|ref|ZP_11463404.1| transcription-repair coupling factor [Gardnerella vaginalis 6420B]
gi|388055827|gb|EIK78712.1| transcription-repair coupling factor [Gardnerella vaginalis 6420B]
Length = 1202
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 247/628 (39%), Positives = 379/628 (60%), Gaps = 20/628 (3%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVP-----IEYVFIEYADGMAKLPVKQ 203
+D L+ GD+VVH++ GIG+FVG+K Q++ V EY+ IEYA P +
Sbjct: 522 IDLMELKPGDFVVHEQHGIGRFVGMK---QRNIAVSGGSATREYLVIEYAPSKRNAPNDK 578
Query: 204 ASRMLYRYNLPNE---TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
+ +L ++ + P+ L+KL + W + K K K + ++ +L++LY R +
Sbjct: 579 LFIPTDQLDLVSKYIGAEIPK-LNKLGGSD-WAQTKAKAKKHVHEIAENLIKLYSARQQS 636
Query: 261 KRPPYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
+ + K+ P E FPY+ T DQ +V+ D+ E+ PMDRLICGDVGFGKTE+
Sbjct: 637 RGFAFSKDTPWQKELEDAFPYQETADQLTTIDEVKADM-EKPIPMDRLICGDVGFGKTEI 695
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
ALRA F V KQ +VL PT +L +QH++ + RF +P +KV +SRFQ+ E EE L
Sbjct: 696 ALRAAFKAVQDSKQVVVLVPTTLLVQQHYETFTNRFEGFP-VKVAAMSRFQTSKEIEETL 754
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
++ G +++++GTH LL + + +LGL+++DEEQRFGV+ KE + + + +VDVL+LSA
Sbjct: 755 AGLQDGSIDVVIGTHKLLNPSIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSA 814
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL +A+TG R+ S ++TPP +RLP+ T++ A+ +V + IK EL RGGQVFYV
Sbjct: 815 TPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYDNSQVAACIKRELLRGGQVFYVH 874
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
R++ + +Q+ P V +AIAHG+ +QL+ + F I +L+CT I+E+GLD
Sbjct: 875 NRVEDISSVASKIQELVPDVRVAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIIETGLD 934
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
I NANT+IV +FGL+QL+QLRGRVGR + A+AY Y ++ Q+ +RL+ + +
Sbjct: 935 ISNANTLIVDHADRFGLSQLHQLRGRVGRGHERAYAYFLYDPSKPMTQQSHDRLSTIAQH 994
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
LG GF +A KD+ +RG G + G++Q+G + VG DL+ M+ E++ K E V
Sbjct: 995 TALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEAVEKYKEPE--RVEP 1052
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
V ID+ + LP +YI + + + + AA +D L + + L ++G P
Sbjct: 1053 VCVTIDLPVEASLPVDYI--ASDKLRLEAYRKLAAAKDNSDLRELHDELLDRFGNPPEEF 1110
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E L +R A +IGIT+I + GK V
Sbjct: 1111 ESLCDVARLRFKAREIGITQISSQGKSV 1138
>gi|27469198|ref|NP_765835.1| transcription-repair coupling factor [Staphylococcus epidermidis ATCC
12228]
gi|81842450|sp|Q8CMT1.1|MFD_STAES RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|27316747|gb|AAO05922.1|AE016751_217 transcription-repair coupling factor [Staphylococcus epidermidis ATCC
12228]
Length = 1169
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/628 (39%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ+ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL ++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQTIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGVELIKDKGKSI 1101
>gi|337751796|ref|YP_004645958.1| hypothetical protein KNP414_07598 [Paenibacillus mucilaginosus
KNP414]
gi|336302985|gb|AEI46088.1| Mfd [Paenibacillus mucilaginosus KNP414]
Length = 1174
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 248/619 (40%), Positives = 374/619 (60%), Gaps = 19/619 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIGKFVGI + + +Y+ I YA G +P+ Q + + +Y
Sbjct: 488 LKVGDYVVHVNHGIGKFVGI--GTLEVGGIHKDYLHIMYAGGDKLSVPIDQIDQ-VQKYV 544
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E K P+ + KL T W R K+K + ++Q + DL++LY R Q Y N
Sbjct: 545 GAEEGKEPK-IYKLGGTD-WNRVKSKARASVQDIADDLIKLYAER--QATVGYAFNGDSN 600
Query: 272 --AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF FPYE T DQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 601 YQQEFEGMFPYEETTDQLRAIEEIKKDM-EKPRPMDRLLCGDVGYGKTEVAIRAAFKAAI 659
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQ VL PT +LA+QH++ ERFS YP + +LSRF+SK E+ + + +K G +++
Sbjct: 660 DGKQVAVLVPTTILAQQHYETFRERFSGYP-FNIQVLSRFRSKKEQTDTMKGVKAGTVDV 718
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH LL V + +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL+++
Sbjct: 719 VIGTHRLLSKDVQFKDLGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMS 778
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
+ G RD S+I TPP R P++T++ +S V AI+ EL R GQV+Y+ R++G+ +
Sbjct: 779 MLGVRDLSVIETPPENRFPVQTYVVEYSTNLVREAIERELAREGQVYYLYNRVQGITQMA 838
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+ + P + +AHGQ ++LE+T+ F G +L+ T+I+E+G+DI N NT++V
Sbjct: 839 EQITALVPEARVTVAHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLVVH 898
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A
Sbjct: 899 DADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIA 958
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISVPYKSVQID 685
+D+ IRG G + G +Q+G + +VG DL+ +ML E +SK + V S Q+D
Sbjct: 959 MRDLSIRGAGNLLGAEQSGFIASVGFDLYSQMLGEEISKRKKEMGGEAVQETKAWSTQLD 1018
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
I ++ +P +YI +E+ + A Q + + + L ++G P ++ LL
Sbjct: 1019 IQLDAYIPGDYIYDSVQKIEIYKKV--AGIQTLEEAAELHDELVDRFGDLPEAVHNLLLA 1076
Query: 746 LYVRRMAADIGITKIYASG 764
++ A I I G
Sbjct: 1077 ARLKVYGAQYAIETISQKG 1095
>gi|379724734|ref|YP_005316865.1| hypothetical protein PM3016_7139 [Paenibacillus mucilaginosus 3016]
gi|378573406|gb|AFC33716.1| Mfd [Paenibacillus mucilaginosus 3016]
Length = 1174
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 248/619 (40%), Positives = 374/619 (60%), Gaps = 19/619 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIGKFVGI + + +Y+ I YA G +P+ Q + + +Y
Sbjct: 488 LKVGDYVVHVNHGIGKFVGI--GTLEVGGIHKDYLHIMYAGGDKLSVPIDQIDQ-VQKYV 544
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E K P+ + KL T W R K+K + ++Q + DL++LY R Q Y N
Sbjct: 545 GAEEGKEPK-IYKLGGTD-WNRVKSKARASVQDIADDLIKLYAER--QATVGYAFNGDSN 600
Query: 272 --AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF FPYE T DQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 601 YQQEFEGMFPYEETTDQLRAIEEIKKDM-EKPRPMDRLLCGDVGYGKTEVAIRAAFKAAI 659
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQ VL PT +LA+QH++ ERFS YP + +LSRF+SK E+ + + +K G +++
Sbjct: 660 DGKQVAVLVPTTILAQQHYETFRERFSGYP-FNIQVLSRFRSKKEQTDTMKGVKAGTVDV 718
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH LL V + +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL+++
Sbjct: 719 VIGTHRLLSKDVQFKDLGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMS 778
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
+ G RD S+I TPP R P++T++ +S V AI+ EL R GQV+Y+ R++G+ +
Sbjct: 779 MLGVRDLSVIETPPENRFPVQTYVVEYSTNLVREAIERELAREGQVYYLYNRVQGITQMA 838
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+ + P + +AHGQ ++LE+T+ F G +L+ T+I+E+G+DI N NT++V
Sbjct: 839 EQITALVPEARVTVAHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLVVH 898
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A
Sbjct: 899 DADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIA 958
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISVPYKSVQID 685
+D+ IRG G + G +Q+G + +VG DL+ +ML E +SK + V S Q+D
Sbjct: 959 MRDLSIRGAGNLLGAEQSGFIASVGFDLYSQMLGEEISKRKKEMGGEAVQETKAWSTQLD 1018
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
I ++ +P +YI +E+ + A Q + + + L ++G P ++ LL
Sbjct: 1019 IQLDAYIPGDYIYDSVQKIEIYKKV--AGIQTLEEAAELHDELVDRFGDLPEAVHNLLLA 1076
Query: 746 LYVRRMAADIGITKIYASG 764
++ A I I G
Sbjct: 1077 ARLKVYGAQYAIETISQKG 1095
>gi|251794075|ref|YP_003008806.1| transcription-repair coupling factor [Paenibacillus sp. JDR-2]
gi|247541701|gb|ACS98719.1| transcription-repair coupling factor [Paenibacillus sp. JDR-2]
Length = 1175
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 249/624 (39%), Positives = 387/624 (62%), Gaps = 38/624 (6%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH+ GIGK+VGI + + +Y+ I YA G +PV+Q M+ +Y
Sbjct: 488 LKVGDYVVHQNHGIGKYVGIG--TLEIGGIHKDYLHILYAGGDKLSVPVEQVD-MIQKY- 543
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ +E K P+ ++KL + W R K K + ++Q + DL++LY R Q P + A
Sbjct: 544 VGSEEKEPK-INKLG-GSEWIRAKNKVRASVQDIADDLIKLYAER--QSAPGFAFGQDTA 599
Query: 273 ---EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF A FPY+ T DQ +A ++++D+ ++ PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 600 YQNEFEAIFPYDETRDQLRAIEEIKKDM-QKPQPMDRLLCGDVGYGKTEVAVRAAFKAAI 658
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQ +L PT +LA+QH++ ERFS YP + +LSRF+S+ E+ + + +K G +++
Sbjct: 659 EGKQVAILVPTTILAQQHYETFRERFSGYP-FNIQVLSRFRSRKEQNDTMKGLKAGTVDV 717
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH LL V++ +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL+++
Sbjct: 718 VIGTHRLLSQDVIFKDLGLLIVDEEQRFGVSHKEKLKKLKTNVDVLTLTATPIPRTLHMS 777
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
+ G RD S+I TPP R P++T++ +S V AI+ EL RGGQV+Y+ R++G+ +
Sbjct: 778 MLGVRDLSVIETPPENRFPVQTYVVEYSTSLVREAIERELARGGQVYYLYNRVQGIYQMA 837
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+ + P +A+ HGQ ++LE+T+ F G +L+ T+I+E+G+DI N NT+IV
Sbjct: 838 EQINALVPDAKVAVGHGQMSEQELEKTILDFLDGESDVLVSTSIIETGVDIPNVNTLIVH 897
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E ELG GF++A
Sbjct: 898 DADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIA 957
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYK---SVQID 685
+D+ IRG G + G +Q G + +VG DL+ +ML + ++K E + V + S ID
Sbjct: 958 MRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLADEIAKRKAEMEGVEVKEERRVSTLID 1017
Query: 686 ININPRLPSEYINHLENPMEM---------VNEAEKAAEQDIWCLMQFTESLRRQYGKEP 736
++I+ LPS+YI +E+ ++EAE AE+ L ++G P
Sbjct: 1018 VSIDAYLPSDYIYDSIQKIEIYKKVATVTSIDEAEDLAEE-----------LIDRFGNLP 1066
Query: 737 YSMEILLKKLYVRRMAADIGITKI 760
+++ LL ++ GI +I
Sbjct: 1067 QAVDNLLSVARLKVYGTQYGIEQI 1090
>gi|403238488|ref|ZP_10917074.1| transcription-repair coupling factor [Bacillus sp. 10403023]
Length = 1178
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 244/618 (39%), Positives = 382/618 (61%), Gaps = 18/618 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQAS 205
++ YS L+ GD+VVH GIGK++GI + + + + +Y+ I Y D +PV Q
Sbjct: 494 RIKSYSELQVGDHVVHVNHGIGKYLGI--ETLEINGIHKDYLHIRYQGDDKLYVPVDQIE 551
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
+ + +Y + +E K P+ + KL T W+R K K + ++Q + DL++LY R K +
Sbjct: 552 Q-VQKY-VGSEGKEPK-IYKLGGTD-WKRVKKKVESSVQDIADDLIKLYAEREASKGFAF 607
Query: 266 -PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P EF A FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 608 SPDGEMQREFEALFPYQETEDQLRSIQEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAA 666
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F + GKQ +L PT +LA+QH++ + ERF ++P I +GLLSRF+SK ++ E + +K
Sbjct: 667 FKAIMDGKQVAILVPTTILAQQHYETIRERFQEFP-ISIGLLSRFRSKKQQTEVMKGLKS 725
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++++VGTH LL + Y +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIPR
Sbjct: 726 GTIDMVVGTHRLLSKDITYKDLGLLIIDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPR 785
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R P++T++ ++ E + AI+ E+ R GQV+++ R++
Sbjct: 786 TLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGELIREAIEREMARDGQVYFLYNRVED 845
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E + + P IA AHG+ +LE + F G +L+ T I+E+G+DI N N
Sbjct: 846 IERKAEEISMLVPDARIAYAHGKMSENELESVILNFLDGQYDVLVTTTIIETGVDIPNVN 905
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+IVQD + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 906 TLIVQDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNEVAEKRLQAIKEFTELGS 965
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV--DEHCVISVPYKSV 682
GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ + D V V +V
Sbjct: 966 GFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEERMGDTAAVKQV---NV 1022
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
+ID+ ++ +P YI ++M + + + E + ++G+ P + L
Sbjct: 1023 EIDVEVDAYIPDAYIADGRQKIDMYKRFRGITTME--DIEELQEEMIDRFGEYPEEVNYL 1080
Query: 743 LKKLYVRRMAADIGITKI 760
K ++ A G+ I
Sbjct: 1081 FKIAKIKVYALAEGVISI 1098
>gi|83588954|ref|YP_428963.1| transcription-repair coupling factor [Moorella thermoacetica ATCC
39073]
gi|83571868|gb|ABC18420.1| transcription-repair coupling factor [Moorella thermoacetica ATCC
39073]
Length = 1183
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 258/630 (40%), Positives = 379/630 (60%), Gaps = 34/630 (5%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYR 210
L+ GDYVVH GIG+++G++ DV V +Y+ I+YA G +L PV Q S L +
Sbjct: 504 LKEGDYVVHVHHGIGRYLGLQQLDV---GGVKKDYLLIQYA-GKDRLYVPVDQVS--LVQ 557
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PK 267
+ E PR L +L W + K++ + A+Q+M +L++LY R + P + P
Sbjct: 558 KYVGGEGHVPR-LYRLGGNE-WNKVKSRVQEAVQEMAQELLDLYARR--EAIPGHAFGPD 613
Query: 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
P EF FPY TPDQ +A +V+ D+ E+ PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 614 TPWQREFEEAFPYTETPDQLRAIAEVKADM-EKPRPMDRLLCGDVGYGKTEVAMRAAFKA 672
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V G Q VL PT +LA+QH++ RF+ +P +K+ +LSRF S E++ ++ +K G +
Sbjct: 673 VMDGMQVAVLVPTTILAQQHYETFKARFAPFP-VKIAVLSRFCSPREQKVVVEALKRGEV 731
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH LL S V + NLGL+++DEEQRFGV KEK+ + SVDVLT++ATPIPRTL+
Sbjct: 732 DIVIGTHRLLSSDVNFKNLGLVIIDEEQRFGVAHKEKLKQLRYSVDVLTMTATPIPRTLH 791
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
++L G RD S+I TPP +R P++T++ ++ E V AI+ ELDRGGQVF V R++ ++
Sbjct: 792 MSLAGVRDMSMIETPPEDRFPVQTYVVEYNPELVREAIRRELDRGGQVFIVHNRVQDIDR 851
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+QQ P + I HGQ +LE M F G +L+ T IVE+GLDIQNANT+I
Sbjct: 852 FAYHIQQLVPEARVGIGHGQMGEEELENVMLDFISGRYDVLVSTTIVENGLDIQNANTLI 911
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
V + FGLAQLYQLRGRVGR ++ A+AY Y +L + A +RLAA+ E G G++
Sbjct: 912 VDESDNFGLAQLYQLRGRVGRTNRLAYAYFTYRPDKVLGEIAEKRLAAIREFTAFGSGYK 971
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY------KS 681
+A +D+ IRG G G +Q G + VG DL+ ++L E++ K+ E VP ++
Sbjct: 972 IALRDLQIRGAGNFLGPEQHGHMVAVGFDLYCQLLEEAVRKLKEQRGEGVPRPALAEPQA 1031
Query: 682 VQIDININPRLPSEYINHLENPME----MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPY 737
I+++++ L YI ME ++N + AA +DI M+ +YG P
Sbjct: 1032 TPIELSVDTFLGDNYIPEATLKMELYHRLMNAGDLAAVEDIAAEME------DRYGPPPP 1085
Query: 738 SMEILLKKLYVRRMAADIGITKIYASGKMV 767
LL VR +A ++G+ + + V
Sbjct: 1086 EARNLLALTRVRILAREVGVISVNQKNREV 1115
>gi|157690837|ref|YP_001485299.1| transcription-repair coupling factor [Bacillus pumilus SAFR-032]
gi|157679595|gb|ABV60739.1| transcription-repair coupling factor [Bacillus pumilus SAFR-032]
Length = 1177
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 236/563 (41%), Positives = 364/563 (64%), Gaps = 14/563 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQVGDYVVHINHGIGKYLGI--ETLEIGGIHKDYLNIHYQ-GSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLGGSD-WKRVKKKVESSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + +F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQRQFESAFPYQETDDQIRSIHEIKQDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ +L PT +LA+QHFD + +RF YP +K+ LSRF+++ E E L +K
Sbjct: 665 AFKAIADGKQVALLVPTTILAQQHFDTIMDRFQDYP-VKIAQLSRFRTRKETTETLKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G +++++GTH LL +VY +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIP
Sbjct: 724 NGTIDMVIGTHRLLSKDIVYKDLGLLIIDEEQRFGVTHKEKIKQMKANIDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P ++ AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVHDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + ++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGDTTAQDKFEP-E 1022
Query: 684 IDININPRLPSEYINHLENPMEM 706
ID+ I+ +P YI+ + +EM
Sbjct: 1023 IDLQIDAYIPDTYISDGKQKIEM 1045
>gi|289450268|ref|YP_003474746.1| transcription-repair coupling factor [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289184815|gb|ADC91240.1| transcription-repair coupling factor [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 1241
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 259/667 (38%), Positives = 388/667 (58%), Gaps = 18/667 (2%)
Query: 132 AGAGDSGYNGAGGFSYKVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFI 190
AG N +D +S LR GD VVH GIG + G++ V+ D V +Y+++
Sbjct: 535 AGKAKRRRNRGSTTGVALDLFSDLRPGDLVVHDIHGIGIYKGLR-SVEVDG-VRRDYIWL 592
Query: 191 EYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDL 250
YA+ +A L +Y +E + P+ LS+L T W++ K K + +++K+ DL
Sbjct: 593 SYANNDELYLPMEALDQLQKYIGVSEQQNPK-LSRLGGTD-WQKLKNKARDSVKKLAFDL 650
Query: 251 MELYLHRLKQKRPPYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLIC 309
++LY R K K +P EFA FP+E T DQ + +V D+ E + MDRL+C
Sbjct: 651 VKLYAERRKIKGYKFPPETTWEREFAESFPFEETDDQLRCIKEVSADM-ESDKVMDRLLC 709
Query: 310 GDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRF 369
GDVGFGKTEVA RA+F V GKQA +LAPT VLA+QH++ R + +P I+VGLLSRF
Sbjct: 710 GDVGFGKTEVAFRALFKAVMGGKQAALLAPTTVLAQQHYENFMNRINGFP-IRVGLLSRF 768
Query: 370 QSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFK 429
+ A + + L + G++++++GTH LL V + LGLL++DEEQRFGV+ KEK+
Sbjct: 769 ANDAMQHKTLSGLATGNIDVVIGTHRLLSKDVKFKKLGLLIIDEEQRFGVEHKEKLKVNY 828
Query: 430 ISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYEL 489
VDVLTLSATPIPRTL++AL+G RD S+I P +R + T++ + VI AI E
Sbjct: 829 QGVDVLTLSATPIPRTLHMALSGIRDISVIEEAPLDRRSVLTYVMEYDPAIVIDAINREF 888
Query: 490 DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILI 549
R GQVFY+ G++ ++ LQ+A PG IA HG+ +QLE+ + F G IL+
Sbjct: 889 SRHGQVFYLYNNTAGIDAKVNELQEALPGARIAAGHGKMSEKQLEQVINDFYAGETDILV 948
Query: 550 CTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQA 609
CT I+ESG+D+ N NT+IV++ + GLAQLYQLRGRVGR+ ++A+AY+ Y +L++ A
Sbjct: 949 CTTIIESGIDMPNVNTLIVENADRLGLAQLYQLRGRVGRSGRQAYAYITYRRDKVLTEVA 1008
Query: 610 LERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV 669
+RL A+ + ELG GF++A KD+ +RG G I G +Q G + VG D++ ML E ++K
Sbjct: 1009 EKRLTAIRDFTELGSGFKIAMKDLEVRGAGNILGGEQHGQMAAVGYDMYCRMLDEEIAKA 1068
Query: 670 DEHC--------VISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCL 721
+ S+P +DI ++ LP E+I M+M A E D
Sbjct: 1069 ETELNGEAGSKPKNSLPAVETIVDIPVDAYLPREFIADEGQRMDMYKRL-TAIESD-RDY 1126
Query: 722 MQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMM 781
+ L ++G+ P + +L Y+R MA+ GI ++ + M+ +KV +
Sbjct: 1127 HDVIDELLDRFGELPPEVTVLAAISYIRHMASKAGIERVSRQDDRIIMRLPAGQKVNMPL 1186
Query: 782 IDSMTSE 788
I ++ ++
Sbjct: 1187 IAAIMAQ 1193
>gi|309790907|ref|ZP_07685449.1| transcription-repair coupling factor [Oscillochloris trichoides DG-6]
gi|308227021|gb|EFO80707.1| transcription-repair coupling factor [Oscillochloris trichoides DG6]
Length = 1171
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/638 (38%), Positives = 379/638 (59%), Gaps = 40/638 (6%)
Query: 154 LRSGDYVVHKKVGIGKFVG-IKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH + GI + G I+ V + + EY+ + YA G +PV Q R+ RY
Sbjct: 489 LKVGDYVVHIEHGIAIYDGLIRRTVGE---IEREYLVLRYAAGDKIYVPVDQIDRV-TRY 544
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
++ TL++L T WER K K + A+Q + DL+ LY R ++ + P N
Sbjct: 545 IGAGDSSP--TLTRLG-TQDWERAKRKARAAVQDLAQDLLALYAQRQTKRGHAFNPDNEW 601
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E FPY T DQ + +V+ D+ E + PMDRLICGDVGFGKTEVALRA F V
Sbjct: 602 QRELEGSFPYIETEDQLRVLAEVKTDM-EHDVPMDRLICGDVGFGKTEVALRAAFKAVQD 660
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ +L PT VLA+QHF+ +R + +P +KV +LSRF+S E++ + + G ++II
Sbjct: 661 GKQVALLVPTTVLAQQHFETFKQRMAAFP-VKVEMLSRFRSAKEQDVIMRELLLGRVDII 719
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH LL V++ +LGL++VDEEQRFGV+ KE++ + VDVLTL+ATPIPRTL++A+
Sbjct: 720 IGTHRLLSKDVIFKDLGLVIVDEEQRFGVRHKERLKQLRAEVDVLTLTATPIPRTLHMAM 779
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+I TPP +R+P+KT+++ + + + AI EL+R GQV++V R++ + +
Sbjct: 780 AGIRDLSVIDTPPEDRIPVKTYVTPYDETLIREAILRELERNGQVYFVHNRVQSIYHVAN 839
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L+ P +I + HGQ R+LE+ M F +G +L+CT I+ESGLD+ +ANT+I+ D
Sbjct: 840 HLRNLVPEANIGVGHGQLNERELEQVMIDFFEGRHDVLVCTTIIESGLDVSSANTMIIDD 899
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGLAQLYQLRGRVGR+ A+AYLFY ++++A +RL A++E ELG GF++A
Sbjct: 900 ATNFGLAQLYQLRGRVGRSANRAYAYLFYKGDRAMTEEAQQRLEAIQEATELGAGFRVAM 959
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---------------------- 668
+D+ IRG G + G +Q+G + VG DL+ +L +++ +
Sbjct: 960 RDLEIRGAGNLLGAEQSGHIAAVGFDLYSRLLEQAVQQLKQRVDAAQHSSATPPPPPAAP 1019
Query: 669 -VDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTES 727
++E ++S V +D+ + LPS+YI + + + +++ + +
Sbjct: 1020 IINEKVLVS---PLVTLDLPLTAYLPSDYIP--DEALRLGVYQRMVGSEELTEVRALRQE 1074
Query: 728 LRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGK 765
L+ ++G P LL L ++ +A G+T + S +
Sbjct: 1075 LQDRFGNPPLPALHLLTWLQIKALALQAGVTSVTTSNE 1112
>gi|150014978|ref|YP_001307232.1| transcription-repair coupling factor [Clostridium beijerinckii NCIMB
8052]
gi|149901443|gb|ABR32276.1| transcription-repair coupling factor [Clostridium beijerinckii NCIMB
8052]
Length = 1166
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/644 (39%), Positives = 398/644 (61%), Gaps = 22/644 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH GIG + GIK DV +Y+ I Y G +PV Q ++ +Y
Sbjct: 502 LKPGDYVVHANHGIGVYKGIKQIDVGGHKR---DYLDIVYDKGDKLYVPVDQLD-LIQKY 557
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E K P+ ++KL + W++ K K + +I ++ DL++LY R K + K+
Sbjct: 558 -IGSEGKSPK-VNKLG-SAEWQKAKAKARKSINEIAEDLVKLYAMRSTVKGHKFSKDTEW 614
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FP+E TPDQ + +++ D+ E + PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 615 QKQFEDEFPFEETPDQLTSLEEIKIDM-ESDKPMDRLLCGDVGYGKTEVAIRAAFKAVMD 673
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ +L PT +LA+QH+ + RFS +P IK+ ++SRF++ +++E L +K G+L+I+
Sbjct: 674 GKQVALLVPTTILAEQHYKNIKNRFSDFP-IKIDMVSRFRTAKQQKEILQKVKEGNLDIL 732
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ + + +LGLL+VDEEQRFGVKQKEKI K +VDVLTLSATPIPRTL+++L
Sbjct: 733 IGTHRLVSKDIQFKDLGLLIVDEEQRFGVKQKEKIKGIKKNVDVLTLSATPIPRTLHMSL 792
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
+G RD S+I TPP ER P++T++ + + + AI E+ RGGQV++V R++ +E
Sbjct: 793 SGVRDISVIETPPEERYPVQTYVVEQNDQLIRDAILREIGRGGQVYFVYNRVEDIERMAK 852
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
++Q P + IAHGQ RQLE+ M F +L+CT I+E+G+DIQN NTII+ D
Sbjct: 853 YVQSLVPESKVGIAHGQMAERQLEKEMFDFMSEEYNVLVCTTIIETGMDIQNVNTIIIYD 912
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR+++ A+AYL Y +L++ A +RL AL++ ELG GF++A
Sbjct: 913 ADKMGLSQLYQLRGRVGRSNRIAYAYLLYTKDKVLTEVAEKRLKALKDFTELGSGFKIAM 972
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G Q G + ++G DL+ ML E K+ + + P ++ +DI ++
Sbjct: 973 RDLEIRGAGNMMGSSQHGHMASIGYDLYCRML-EDTVKLLKGEIQKEPIETT-LDIKVDA 1030
Query: 691 RLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+ N++E+ ++ + +K AA + + E L +Y K P + L+ Y++
Sbjct: 1031 FISE---NYIEDEIQKIEVYKKIAAIEGLDDYSDIKEELEDRYSKIPEPVYNLMDIAYIK 1087
Query: 750 RMAADIGITKIYASGKMVGMKTNMN----KKVFKMMIDSMTSEV 789
A I I +I + K + K + K +FK++++ + V
Sbjct: 1088 SRAKSIFIEEIKETPKELLFKFSQGESEYKNIFKILMEKYKNSV 1131
>gi|384157668|ref|YP_005539741.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
TA208]
gi|384166683|ref|YP_005548061.1| transcription-repair coupling factor [Bacillus amyloliquefaciens XH7]
gi|328551756|gb|AEB22248.1| transcription-repair coupling factor [Bacillus amyloliquefaciens
TA208]
gi|341825962|gb|AEK87213.1| transcription-repair coupling factor [Bacillus amyloliquefaciens XH7]
Length = 1177
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 239/563 (42%), Positives = 363/563 (64%), Gaps = 14/563 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQVGDYVVHVNHGIGKYLGI--ETLEIKGIHKDYLNIHYQ-GSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLG-GSEWKRVKKKVENSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + +F A FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQRQFEAAFPYQETDDQLRSIQEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIADGKQVALLVPTTILAQQHYETIMERFQDYP-INIGLLSRFRTRKESNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R+
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVD 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P +A AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + + + +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEE-RKGDTPKIEQFETE 1022
Query: 684 IDININPRLPSEYINHLENPMEM 706
IDI ++ +P YI + ++M
Sbjct: 1023 IDIELDAYIPENYIQDGKQKIDM 1045
>gi|297616314|ref|YP_003701473.1| transcription-repair coupling factor [Syntrophothermus lipocalidus
DSM 12680]
gi|297144151|gb|ADI00908.1| transcription-repair coupling factor [Syntrophothermus lipocalidus
DSM 12680]
Length = 1081
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 262/625 (41%), Positives = 388/625 (62%), Gaps = 22/625 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRY 211
LR GDYVVH+ GIG F GI K +V+ + EY+ I+YA LPV + ML RY
Sbjct: 424 LRVGDYVVHENHGIGLFQGITKMEVEGFAK---EYLVIQYAGSDRLYLPVDKLE-MLTRY 479
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
P++ K PR LSKL T WE+ K + + +I++M +L+ +Y L+Q P + +P
Sbjct: 480 TGPDD-KEPR-LSKLGGTD-WEKTKNRVRESIREMAQELLRVYA--LRQTVPGFAFSPDT 534
Query: 272 A---EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328
EF F YE T DQ +A +V++D+ E PMDRLICGDVG+GKTEVALRA F V
Sbjct: 535 VWQKEFEDAFEYEETADQIRAVAEVKKDM-ETPRPMDRLICGDVGYGKTEVALRAAFKAV 593
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 388
KQ +L PT +LA+QH+ ERF P + + +LSRF++ +++ L+ +K G ++
Sbjct: 594 MDHKQVAILVPTTILAEQHYQTCLERFKNTP-VVIEVLSRFRTPGQQKRILEDLKKGVID 652
Query: 389 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 448
II+GTH LL V + +LGLLVVDEE RFGV+QKE+I + K +VD L+LSATPIPRTL++
Sbjct: 653 IIIGTHRLLSRDVRFKDLGLLVVDEEHRFGVRQKERIKALKETVDALSLSATPIPRTLHM 712
Query: 449 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 508
ALTG RD S+I TPPP+R PI T++ ++++ + AI+ E++RGGQVF V RI+ +E
Sbjct: 713 ALTGLRDLSVIETPPPDRYPITTYVLEYNEDIIREAIRAEVERGGQVFAVHNRIQDIEMF 772
Query: 509 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 568
+ LQ P V + +AHG+ +L + M++F ++L+CT I+ESGLD+ N NT+IV
Sbjct: 773 RNHLQMLVPEVKMEVAHGRVPEDELADIMKRFLNQEFQVLVCTTIIESGLDMPNVNTLIV 832
Query: 569 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQ 627
+ + GLAQLYQLRGRVGR+ + A+AY Y PDKS +++ A +RL A+ E ELG G +
Sbjct: 833 DEADRLGLAQLYQLRGRVGRSKRLAYAYFTYRPDKS-VTEAAQKRLNAIREFTELGSGMK 891
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDIN 687
+A +D+ IRG G I G +Q G + VG DL+ +L E ++++ S +D+
Sbjct: 892 IALRDLEIRGAGNILGPEQHGYIAAVGFDLYCRLLEEETARLNGTAPRS--EGDTLLDVR 949
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
I+ +P +Y+ + +++ A AA I + + L+ ++G P +E LL+
Sbjct: 950 IDAFIPDDYVGDIGLKLQVYRRAMFAA--SIQEIDEIRAELKERFGSLPAPVENLLRLSR 1007
Query: 748 VRRMAADIGITKIYASGKMVGMKTN 772
+R A I I +G ++ ++ N
Sbjct: 1008 LRVCARSKDIKSISTNGGVLQIRLN 1032
>gi|306835701|ref|ZP_07468707.1| transcription-repair coupling factor [Corynebacterium accolens ATCC
49726]
gi|304568419|gb|EFM43978.1| transcription-repair coupling factor [Corynebacterium accolens ATCC
49726]
Length = 1213
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 250/633 (39%), Positives = 375/633 (59%), Gaps = 20/633 (3%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQK-DSTVPIEYVFIEYADGMAKLPVKQAS 205
KVDP +L+ GD+VVH+ GIGKF+ + + +Q D T EY+ +EYA P Q
Sbjct: 502 KVDPLALKQGDFVVHETHGIGKFLKMAERTIQSGDETSRREYIVLEYAPSKRGQPADQLW 561
Query: 206 RMLYRYNLPNETKRPRT--LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
+ +L ++ + LSK+ + W+ K K + A++++ +L++LY R Q P
Sbjct: 562 VPMDSLDLLSKYTGGESPHLSKMGGSD-WKNTKKKARAAVREIAGELVDLYAKR--QAAP 618
Query: 264 PY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320
+ P NP AE FP+ T DQ A V+ D+ E PMDR++ GDVG+GKTEVA
Sbjct: 619 GHQFAPDNPWQAEMEDNFPFVETEDQMLAIDAVKEDM-ESTVPMDRVVVGDVGYGKTEVA 677
Query: 321 LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380
+RA F V G Q VL PT +LA+QH+D SER + +P +K+ +LSRF SK E E
Sbjct: 678 IRAAFKAVQDGTQVAVLVPTTLLAQQHYDTFSERMAGFP-VKMAVLSRFTSKKEATEIFK 736
Query: 381 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSAT 440
+ G ++I+VGTH LL + V + NLGL+VVDEEQRFGV+ KE I + K SVDVLT+SAT
Sbjct: 737 GLADGSIDIVVGTHRLLQTGVHWKNLGLIVVDEEQRFGVEHKEHIKALKASVDVLTMSAT 796
Query: 441 PIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLP 500
PIPRTL +++ G R+ S I TPP +R P+ T++ A+ ++V +AI+ EL R GQ F++
Sbjct: 797 PIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYEDKQVAAAIRRELLRDGQTFFIHN 856
Query: 501 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
++ +E+ L+ P I +AHGQ LE+T++ F +L+CT IVE+GLDI
Sbjct: 857 KVSDIEKKARELRDLVPEARIVVAHGQMNEDVLEKTVQGFWDREYDVLVCTTIVETGLDI 916
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP + L++ + +RLA + +
Sbjct: 917 ANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNN 976
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML------FESLSKVDEHCV 674
+LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ F+SL++ + V
Sbjct: 977 DLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAFKSLARGETPAV 1036
Query: 675 ISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGK 734
K ++ID+ ++ +P YI+ +E+ + AA QD L E + ++G
Sbjct: 1037 TDEGPKEIRIDLPVDAHIPESYIDSERLRLEVYRKL--AASQDNKDLAAAREEMEDRFGT 1094
Query: 735 EPYSMEILLKKLYVRRMAADIGITKIYASGKMV 767
P +E LL +R A +G+ I G V
Sbjct: 1095 LPKEVERLLAVARLRHQARRVGVADITVQGTRV 1127
>gi|386727488|ref|YP_006193814.1| hypothetical protein B2K_36010 [Paenibacillus mucilaginosus K02]
gi|384094613|gb|AFH66049.1| Mfd [Paenibacillus mucilaginosus K02]
Length = 1174
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 248/619 (40%), Positives = 374/619 (60%), Gaps = 19/619 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIGKFVGI + + +Y+ I YA G +P+ Q + + +Y
Sbjct: 488 LKVGDYVVHVNHGIGKFVGI--GTLEVGGIHKDYLHIMYAGGDKLSVPIDQIDQ-VQKYV 544
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E K P+ + KL T W R K+K + ++Q + DL++LY R Q Y N
Sbjct: 545 GAEEGKEPK-IYKLGGTD-WNRVKSKARASVQDIADDLIKLYAER--QATVGYAFNGDSN 600
Query: 272 --AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF FPYE T DQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 601 YQQEFEGMFPYEETTDQLRAIEEIKKDM-EKPRPMDRLLCGDVGYGKTEVAIRAAFKAAI 659
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQ VL PT +LA+QH++ ERFS YP + +LSRF+SK E+ + + +K G +++
Sbjct: 660 DGKQVAVLVPTTILAQQHYETFRERFSGYP-FNIQVLSRFRSKKEQTDTMKGVKAGTVDV 718
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH LL V + +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL+++
Sbjct: 719 VIGTHRLLSKDVQFKDLGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMS 778
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
+ G RD S+I TPP R P++T++ +S V AI+ EL R GQV+Y+ R++G+ +
Sbjct: 779 MLGVRDLSVIETPPENRFPVQTYVVEYSTNLVREAIERELAREGQVYYLYNRVQGITQMA 838
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+ + P + +AHGQ ++LE+T+ F G +L+ T+I+E+G+DI N NT++V
Sbjct: 839 EQITALVPEARVTVAHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLVVH 898
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A
Sbjct: 899 DADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIA 958
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISVPYKSVQID 685
+D+ IRG G + G +Q+G + +VG DL+ +ML E +SK + V S Q+D
Sbjct: 959 MRDLSIRGAGNLLGAEQSGFIASVGFDLYSQMLGEEISKRKKEMGGEAVQETKAWSTQLD 1018
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
I ++ +P +YI +E+ + A Q + + + L ++G P ++ LL
Sbjct: 1019 IQLDAYIPGDYIYDSVQKIEIYKKV--AGIQTLEEAAELHDELVDRFGDLPEAVHNLLLA 1076
Query: 746 LYVRRMAADIGITKIYASG 764
++ A I I G
Sbjct: 1077 ARLKVYGAQYAIETISQKG 1095
>gi|225028227|ref|ZP_03717419.1| hypothetical protein EUBHAL_02499 [Eubacterium hallii DSM 3353]
gi|224954539|gb|EEG35748.1| transcription-repair coupling factor [Eubacterium hallii DSM 3353]
Length = 1187
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 259/674 (38%), Positives = 390/674 (57%), Gaps = 18/674 (2%)
Query: 157 GDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNE 216
GDYVVH+K G+G + G++ ++ D + +Y+ IEY D ++ +Y+ N
Sbjct: 520 GDYVVHEKYGLGIYRGME-KIESDG-ITKDYINIEYKDASNLFVPASQLELIQKYS--NL 575
Query: 217 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AEFA 275
+ R L+KL T WE+ K++ + +Q DL++LY R ++ Y K+ EF
Sbjct: 576 SARKPKLNKLGGT-EWEKTKSRVRSQVQIAAQDLVKLYAERQAKEGYAYGKDTVWQKEFE 634
Query: 276 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 335
FPYE T DQ A D +RD+ E MDRLICGDVG+GKTEVA+RA F V KQ +
Sbjct: 635 ELFPYEETEDQLSAIEDTKRDM-ESHRIMDRLICGDVGYGKTEVAIRAAFKAVMDSKQVV 693
Query: 336 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 395
L PT +LA+QH++ ER YP +++ +LSRF + E++ D +K+G ++I++GTH
Sbjct: 694 YLVPTTILAQQHYNSFKERMEHYP-VEIAMLSRFCTPKEQKRIFDGLKNGTIDIVIGTHK 752
Query: 396 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 455
+L + Y NLGLL++DEEQRFGVKQKEKI K VDVL LSATPIPRTL+++L G RD
Sbjct: 753 VLSKNIKYKNLGLLIIDEEQRFGVKQKEKIKQLKKDVDVLALSATPIPRTLHMSLAGIRD 812
Query: 456 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 515
S++ PP +R I+T++ +++E V AI+ EL RGGQV+YV R+ ++E LQ+
Sbjct: 813 MSVLEVPPVDRRAIQTYVMEYNEELVREAIERELGRGGQVYYVYNRVNNIDEVAAGLQRL 872
Query: 516 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 575
P + AHGQ RQLE M F I +L+ T I+E+GLDI N NT+I+QD Q FG
Sbjct: 873 LPNATVEYAHGQMGERQLETIMSGFINKEIDVLVSTTIIETGLDIPNVNTMIIQDAQLFG 932
Query: 576 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 635
L+QLYQLRGRVGR+++ A+A+L Y S+L ++A +RL A+ E +LG GF++A +D+ I
Sbjct: 933 LSQLYQLRGRVGRSNRTAYAFLMYRRNSILKEEAEKRLKAIREFTDLGSGFKIAMRDLEI 992
Query: 636 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESL--SKVDEHCVISVPYKSVQIDININPRLP 693
RG G + G +Q+G + +VG DL+ +ML E++ K ++ V + + ID++I+ +P
Sbjct: 993 RGAGNLLGAEQSGHMESVGYDLYCKMLNEAVLTMKGEQQEVDTF---TTSIDLSIDAYIP 1049
Query: 694 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 753
YI + Q+ M E + +YG P + L+ +R A
Sbjct: 1050 ETYIKSESEKLSWYKRIATIETQEESEDM--IEEMTDRYGDTPAPLIRLMDVALLREEAH 1107
Query: 754 DIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTF--EGDQIKAELLLELPR 811
+ I G + N KV ID + +RN + E + + +P+
Sbjct: 1108 QAWLLSIEQKGSKILFTMNPRAKVRVEEIDGFLKQ-YRNKMKIKPEANPVFVFESTGIPK 1166
Query: 812 EQLLNWIFQCLAEL 825
+ LL + + + E+
Sbjct: 1167 KDLLAKVREIIGEI 1180
>gi|337286250|ref|YP_004625723.1| transcription-repair coupling factor [Thermodesulfatator indicus DSM
15286]
gi|335359078|gb|AEH44759.1| transcription-repair coupling factor [Thermodesulfatator indicus DSM
15286]
Length = 1167
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 256/618 (41%), Positives = 384/618 (62%), Gaps = 19/618 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVG-IKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GD+VVH++ GIG++ G + ++ +P E++ IEY DG LPV + + +L++Y
Sbjct: 487 LKPGDFVVHREHGIGRYHGLVSLEI---GGLPGEFLLIEYKDGDKLYLPVDKLN-LLHKY 542
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ E K P +L +L + +E RK K + AI+++ +L+ LY R + + P +
Sbjct: 543 -VGLEGKEP-SLDRLGGKS-FEARKKKVQKAIEEVAQELLSLYAARKVGQGFSFEPGPLL 599
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+ A FPYE TP+Q A + +D+ ++ TPMDRL+CGDVG+GKTE+A+RA V
Sbjct: 600 RQVEASFPYEETPEQAVAIEETLKDM-QKPTPMDRLVCGDVGYGKTEIAIRAAALAVENK 658
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT VLA+QHF ER S IKV +LSRF+S E++E L + G ++I+V
Sbjct: 659 KQVAILVPTTVLAEQHFRTFYERLSPL-GIKVAVLSRFKSPKEQKEILKKLAQGEIDIVV 717
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL + V + +LGLL++DEE RFGVK KEKI + +VDVL LSATPIPRTL L+L
Sbjct: 718 GTHRLLSNDVSFKDLGLLIIDEEHRFGVKHKEKIKQLRKNVDVLALSATPIPRTLQLSLL 777
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I+TPP +RLPIKT+L+ F ++ + AI+ EL+R GQVF+V RIKG+ D+
Sbjct: 778 GIRDLSVITTPPEKRLPIKTYLARFDEQVIKEAIERELNRKGQVFFVHNRIKGIYALADW 837
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P I +AHGQ S++LEE M +F + I +L+CT I+ESG+DI +ANTII+
Sbjct: 838 LRRLVPQARIEVAHGQMPSQKLEEIMVRFVRREIDVLVCTTIIESGIDIPSANTIIINRA 897
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GLA++YQLRGRVGR++ +A+AYL P S LS+ A RL AL + ELG GF+LA
Sbjct: 898 DRMGLAEIYQLRGRVGRSNVQAYAYLLVPSLSGLSEDAERRLKALMQFTELGAGFKLAMS 957
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ-- 689
D+ IRG G + G Q+G V VG DL+ E+L ++ ++ + + V+ D+N+
Sbjct: 958 DLQIRGAGNLLGTFQSGHVAAVGYDLYLEILKHTIDEMRGKPL----EEEVESDVNLKVP 1013
Query: 690 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
P+ YI +E + + A ++ + + + ++G P +E L+K ++
Sbjct: 1014 AYFPASYIPDVEQRLHLYRRLALARTRE--AIEELALEIEDRFGILPKEVENLIKLSLLK 1071
Query: 750 RMAADIGITKIYASGKMV 767
+ + K+ GK V
Sbjct: 1072 AILRSFKVRKLDRRGKEV 1089
>gi|342214470|ref|ZP_08707162.1| transcription-repair coupling factor [Veillonella sp. oral taxon 780
str. F0422]
gi|341592730|gb|EGS35591.1| transcription-repair coupling factor [Veillonella sp. oral taxon 780
str. F0422]
Length = 1093
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 249/609 (40%), Positives = 381/609 (62%), Gaps = 18/609 (2%)
Query: 157 GDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYRYNLP 214
GDYVVH GIGK+ G+K + + +Y+ I+YA G +L P + L +Y +
Sbjct: 427 GDYVVHSIHGIGKYRGLK--TIETEGIHRDYIEIDYA-GTDRLFLPADHLDQ-LQKY-IG 481
Query: 215 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIAE 273
NE P+ L K+ W + K+K + +I + L+ELY R L + P P E
Sbjct: 482 NEGVTPK-LHKMGGK-EWIKTKSKAQKSIDNLADTLVELYAKRELIEGYAFLPDQPWQRE 539
Query: 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 333
F QFPYE T DQ +A +++ + E PMDRL+CGDVGFGKTEVA+RA+F V +GKQ
Sbjct: 540 FEDQFPYEETDDQLQAIQEIKASM-ELPRPMDRLLCGDVGFGKTEVAMRAMFKAVMSGKQ 598
Query: 334 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 393
+L PT VL++QHF RFS++ ++V +L+RF+S EK++ + ++ G ++I++GT
Sbjct: 599 VAMLVPTTVLSEQHFKTFMYRFSQF-GVRVEVLNRFRSAKEKKDIIKAVQDGQVDILIGT 657
Query: 394 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 453
H+LL ++ + LGLLVVDEEQRFGV QKEK + ++D+LTLSATPIPRTL+++L G
Sbjct: 658 HALLSKKIQFQKLGLLVVDEEQRFGVAQKEKWKQWATNIDILTLSATPIPRTLHMSLVGV 717
Query: 454 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 513
R+ S+I TPP ERLP++T++ F + V AI+ EL RGGQV++V +++ + + LQ
Sbjct: 718 REMSVIHTPPMERLPVQTYVVEFDMQVVTEAIRRELQRGGQVYFVYNKVQSIAHMEEQLQ 777
Query: 514 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 573
+A P + IA+AHGQ +E M+ F +G +L+CT+I+E+GLDI NANTII+ D
Sbjct: 778 RAMPDLRIAVAHGQMAGTMMEHVMQDFTEGQYDVLLCTSIIETGLDIPNANTIIIYDADH 837
Query: 574 FGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEKD 632
GL+QLYQ+RGRVGR+ + A+AY Y PDK +L++ A +RL A++E ELG GF+LA +D
Sbjct: 838 LGLSQLYQMRGRVGRSSQRAYAYFMYRPDK-VLNESAEKRLKAIQEFTELGAGFKLAMRD 896
Query: 633 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL 692
M IRG G + G QQ G++ VG ++ ML E+++K + + P + +D+ I+ +
Sbjct: 897 MEIRGAGNLLGAQQHGNIAAVGFAMYAAMLEEAIAKAQKKDMPDRPLLAPVVDVGIDAFI 956
Query: 693 PSEYINHLENPMEMVNEAEKAAEQDIWC-LMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
S+YI+ + ++ ++ + D L F + L ++G +E L+K ++
Sbjct: 957 DSDYIH---DEARKISVYQRLLQIDTKAGLDDFVDELIDRFGSPTKPVERLIKLAMIKER 1013
Query: 752 AADIGITKI 760
A +G+ +
Sbjct: 1014 ARALGMKSV 1022
>gi|194018017|ref|ZP_03056624.1| transcription-repair coupling factor [Bacillus pumilus ATCC 7061]
gi|194010354|gb|EDW19929.1| transcription-repair coupling factor [Bacillus pumilus ATCC 7061]
Length = 1177
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 236/563 (41%), Positives = 364/563 (64%), Gaps = 14/563 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQVGDYVVHINHGIGKYLGI--ETLEIGGIHKDYLNIHY-QGSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLGGSD-WKRVKKKVESSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + +F + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQHQFESAFPYQETDDQIRSIHEIKQDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ +L PT +LA+QHFD + +RF YP +K+ LSRF+++ E E L +K
Sbjct: 665 AFKAIADGKQVALLVPTTILAQQHFDTIMDRFQDYP-VKIAQLSRFRTRKETTETLKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G +++++GTH LL +VY +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIP
Sbjct: 724 NGTIDMVIGTHRLLSKDIVYKDLGLLIIDEEQRFGVTHKEKIKQMKANIDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P ++ AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVSYAHGKMSENELESVMINFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVHDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + ++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGDTTAQDKFEP-E 1022
Query: 684 IDININPRLPSEYINHLENPMEM 706
ID+ I+ +P YI+ + +EM
Sbjct: 1023 IDLQIDAYIPDTYISDGKQKIEM 1045
>gi|420186708|ref|ZP_14692750.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM039]
gi|394258878|gb|EJE03751.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM039]
Length = 1169
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 390/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + ++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVVDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEKSPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGVELIKDKGKSI 1101
>gi|308171946|ref|YP_003918651.1| transcription-repair coupling factor [Bacillus amyloliquefaciens DSM
7]
gi|384162461|ref|YP_005543840.1| transcription-repair coupling factor [Bacillus amyloliquefaciens LL3]
gi|307604810|emb|CBI41181.1| transcription-repair coupling factor [Bacillus amyloliquefaciens DSM
7]
gi|328910016|gb|AEB61612.1| transcription-repair coupling factor [Bacillus amyloliquefaciens LL3]
Length = 1177
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 239/563 (42%), Positives = 363/563 (64%), Gaps = 14/563 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQVGDYVVHVNHGIGKYLGI--ETLEIKGIHKDYLNIHYQ-GSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLG-GSEWKRVKKKVENSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + +F A FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQRQFEAAFPYQETDDQLRSIQEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIADGKQVALLVPTTILAQQHYETIMERFQDYP-INIGLLSRFRTRKESNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R+
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVD 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P +A AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + + + +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEE-RKGDTPKIEQFETE 1022
Query: 684 IDININPRLPSEYINHLENPMEM 706
IDI ++ +P YI + ++M
Sbjct: 1023 IDIELDAYIPENYIQDGKQKIDM 1045
>gi|424835858|ref|ZP_18260517.1| transcription-repair coupling factor [Clostridium sporogenes PA 3679]
gi|365977728|gb|EHN13826.1| transcription-repair coupling factor [Clostridium sporogenes PA 3679]
Length = 1168
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/646 (37%), Positives = 396/646 (61%), Gaps = 26/646 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+ GD+VVH GIG F GIK ++Q + +E ++ ++D +PV+Q M+ RY
Sbjct: 501 LKPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIY--HSDDKLYVPVEQLD-MVQRY- 556
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+ +E K+P+ ++KL ++ W + K K K +I+++ DL++LY R K Y +
Sbjct: 557 IGSEGKKPK-VNKLG-SSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGYKYSDDTVWQ 614
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F +FPYE TPDQ A D++RD+ E PMDRL+CGDVG+GKTEVA+RA F V G
Sbjct: 615 KQFEEEFPYEETPDQVLAIEDIKRDM-ESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDG 673
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ +RFS +P + V ++SRF++ +E+ + IK G+++I++
Sbjct: 674 KQVAFLVPTTILAQQHYNNFKQRFSDFP-VTVDVISRFRTLSEQRATIKSIKEGNVDILI 732
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + + +LGLL++DEEQRFGVK KEK+ + K +VDVLTLSATPIPRTL+++L
Sbjct: 733 GTHRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLV 792
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP ER P++T++ ++ + + +I E+ RGGQ+++V R++ + E +
Sbjct: 793 GVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVYNRVESIHEMASY 852
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+ + P + IAHGQ ++LE + F + IL+ T I+E+G+DI+N NT+I+ D
Sbjct: 853 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILVATTIIETGMDIKNVNTMIIYDA 912
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR ++ A+ YL Y +L++ A +RL A+++ ELG GF++A K
Sbjct: 913 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 972
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDIN 687
D+ IRG G + G Q G + ++G DL+ ML +++ +D+ V +++
Sbjct: 973 DLEIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPV------ETSVELK 1026
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
I+ +P+ YI +E+ + ++ + M E L ++ P S+ L+ Y
Sbjct: 1027 IDAYIPNTYIKDETQKIEVYKKIASIDSKEEF--MDIEEELEDRFSDIPISVYNLMNISY 1084
Query: 748 VRRMAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEV 789
+R + + + +I V K+++ +K+ K+++D + EV
Sbjct: 1085 IRSLGKKLDVEEIKEISNEVVFQFQDKSSLKEKIVKIIMDKYSKEV 1130
>gi|218777910|ref|YP_002429228.1| transcription-repair coupling factor [Desulfatibacillum alkenivorans
AK-01]
gi|218759294|gb|ACL01760.1| transcription-repair coupling factor [Desulfatibacillum alkenivorans
AK-01]
Length = 1179
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 247/623 (39%), Positives = 380/623 (60%), Gaps = 22/623 (3%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVG-IKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASR 206
+D L GD+VVH GI ++ G +K D+ V +++ +EY DG LPV + S
Sbjct: 509 LDLAQLSQGDFVVHVDHGIAQYGGLVKMDL---GGVANDFLLLEYRDGDKLYLPVDK-SN 564
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELY-LHRLKQKRPPY 265
++ +Y ET L KL AWE+ K++ K +++K+ +L++LY + ++KQ
Sbjct: 565 LIQKYRTMGETAP--ALEKLGGK-AWEKVKSRVKKSVEKIAGELLKLYAVRKVKQGYAFS 621
Query: 266 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
P + AEF A F YE TPDQ KA DV D+ R PMDRLICGDVG+GKTEVALRA F
Sbjct: 622 PTDSYFAEFEANFEYEETPDQAKAINDVLADMENRR-PMDRLICGDVGYGKTEVALRASF 680
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
VS KQ + PT +L++QH+ +R+ YP +K+ L+RF+ AEK+E L +++G
Sbjct: 681 KAVSDSKQTAFVTPTTILSEQHYRTFLKRYEGYP-VKIACLNRFRKAAEKKEILKGLENG 739
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++I++GTHS+L V + +L L+++DEEQRFGVK KE + + +VDVL L+ATPIPRT
Sbjct: 740 DIDIVIGTHSVLQKSVQFKDLRLVIIDEEQRFGVKHKETLKKIRATVDVLALTATPIPRT 799
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L++++ G RD ++I+TPP +R PI T++S F + AI+ EL R GQVF+V R++ +
Sbjct: 800 LHMSMVGIRDITVINTPPEQRRPITTYVSKFDEVIAAEAIRAELARKGQVFFVHNRVQSI 859
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
+ L++ P + +AHGQ LE+ M KF I +L+CT I+ESGLDI ANT
Sbjct: 860 DAMAGRLKRLVPEARVGVAHGQMSETMLEKVMIKFVNHEIDLLVCTAIIESGLDIPAANT 919
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
I++ FGLAQ+YQLRGRVGR D +A+AYLF PD+S+L+ A RL L E +LG G
Sbjct: 920 ILINRADMFGLAQIYQLRGRVGRGDDQAYAYLFIPDESVLTRDAQRRLKVLMEHSDLGAG 979
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
F +A D+ IRG GTI G Q+G + VG +++ +++ ++ ++ S P +I+
Sbjct: 980 FAIAMSDLQIRGGGTILGSAQSGQIAAVGYEMYLQLMETAIGQLKGEG--SAPPLDPEIN 1037
Query: 686 ININPRLPSEYINHLENPM---EMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
++ + +P YI ++ + ++ EK ++ + F++ ++ ++GK P L
Sbjct: 1038 VDFSAFIPEWYIPDVDQRLLAYRRLSRMEKVSD-----VGAFSKEMQDRFGKVPQETNQL 1092
Query: 743 LKKLYVRRMAADIGITKIYASGK 765
K+ + + D G+ K+ +GK
Sbjct: 1093 FFKIMFKILCRDAGVKKMDMAGK 1115
>gi|452972536|gb|EME72366.1| transcription-repair coupling factor [Bacillus sonorensis L12]
Length = 1177
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 253/647 (39%), Positives = 394/647 (60%), Gaps = 33/647 (5%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + + +Y+ I Y G KL PV Q
Sbjct: 493 RIKSYSELQVGDYVVHVNHGIGKYLGI--ETLEINGIHKDYLNIHY-QGSDKLYVPVDQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLG-GSEWKRVKKKVESSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + EF A FPY+ T DQ ++ ++++D+ E+E PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQREFEAAFPYQETEDQLRSIQEIKKDM-EKERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIADGKQVALLVPTTILAQQHYETIQERFQDYP-INIGLLSRFRTRKEATETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKRIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E + + P +A AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKAEEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVYDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + + V +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAI-EARKGDAPQVERFEPE 1022
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAA---EQDIWCLMQFTESLRRQYGKEPYSME 740
ID+ ++ +P Y+ + ++M A E+D + + + ++G+ P +E
Sbjct: 1023 IDLELDAYIPQTYVTDGKQKIDMYKRFRSVATIEEKD-----ELQDEMIDRFGEYPKEVE 1077
Query: 741 ILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTS 787
L I K+YA + V + +K ++ ID S
Sbjct: 1078 YLFA----------IAEMKVYAIKERVEL-IKQDKDAVRLTIDEKAS 1113
>gi|355574949|ref|ZP_09044585.1| transcription-repair coupling factor [Olsenella sp. oral taxon 809
str. F0356]
gi|354818425|gb|EHF02917.1| transcription-repair coupling factor [Olsenella sp. oral taxon 809
str. F0356]
Length = 1154
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 254/628 (40%), Positives = 384/628 (61%), Gaps = 22/628 (3%)
Query: 148 KVDPYSL----RSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PV 201
+VDP S+ + GDYVVH GI F I Q+ +Y +EYA G KL P+
Sbjct: 482 RVDPTSVSFPFKPGDYVVHSTHGIALFSQIVR--QEVGGRERDYFLLEYA-GQDKLYVPL 538
Query: 202 KQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQK 261
+Q R L RY P+ + PR L++L +T W R K + + +K+ DL++LY R +
Sbjct: 539 EQVDR-LTRYVGPDGSS-PR-LTRL-NTADWSRATGKARRSAKKLAFDLVDLYTRRSAVR 594
Query: 262 RPPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320
+ P PA + A FPY+ TPDQ A D++ D+ E PMDRL+CGDVGFGKTEVA
Sbjct: 595 GHAFAPDGPAQQDMEASFPYDVTPDQASAIADIKADM-ESTQPMDRLLCGDVGFGKTEVA 653
Query: 321 LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380
LRA F +Q MVL PT +LA+QHF+ RFS + D+ V +LSRF + A++ + L+
Sbjct: 654 LRAAFKCCQDDRQVMVLCPTTILAQQHFETFFARFSPF-DLSVRVLSRFVTPAQQRQALE 712
Query: 381 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSAT 440
G +++++GTH LL + V ++LGL+++DEEQRFGV+ KE++ + + VDVLTLSAT
Sbjct: 713 GFAEGTVDVLIGTHRLLSADVNPHDLGLVIIDEEQRFGVQHKEQLKNMREQVDVLTLSAT 772
Query: 441 PIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLP 500
PIPRT+ +A++G RD SLI TPPP RLP+K + + + V AI+ EL+R GQV+YV
Sbjct: 773 PIPRTMQMAMSGVRDMSLILTPPPGRLPVKVTVGEWDPDVVSDAIRGELERKGQVYYVSN 832
Query: 501 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
R+ +E+ + +Q+A P + +AHGQ + Q+E+ M +F++ I +L+ T I+ESG+D
Sbjct: 833 RVTTIEDAVARVQEAAPEARVGVAHGQMSAAQVEDVMMEFSEREIDVLVATTIIESGIDN 892
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
+ NT+I++D Q+ GLAQLYQL+GRVGR +A+AY +P + L+ +A +RL A+ E +
Sbjct: 893 PHTNTLIIEDSQRLGLAQLYQLKGRVGRGHVQAYAYFMFPGEMPLTPEATDRLTAINEYQ 952
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYK 680
+LG G ++A +D+ IRG G++ G +Q G++ +VG DLF +ML E++S+ V
Sbjct: 953 DLGSGMRIAMRDLEIRGAGSLMGGEQHGNLSSVGFDLFTQMLGEAVSEARGEAA-DVSQA 1011
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYGKEPYSM 739
V I++ + L EY+ ++ + AAE D+ L Q L +G P +
Sbjct: 1012 EVNINLPADFYLAEEYLPEVDRRVLAYRRLAVAAELADVDALQQ---ELEEDHGALPLAG 1068
Query: 740 EILLKKLYVRRMAADIGITKI-YASGKM 766
L + VR +G+T I A+G++
Sbjct: 1069 RNLFDRARVRIRCQRLGVTSISLANGRI 1096
>gi|402299308|ref|ZP_10818930.1| transcription-repair coupling factor [Bacillus alcalophilus ATCC
27647]
gi|401725512|gb|EJS98790.1| transcription-repair coupling factor [Bacillus alcalophilus ATCC
27647]
Length = 1179
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/620 (38%), Positives = 392/620 (63%), Gaps = 16/620 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GD +VH GIGK++G+ + + + + +Y+ + YA G KL PV+Q
Sbjct: 494 RIKSYSELKVGDLIVHTNHGIGKYLGV--ETLEFNGLHKDYLHLRYA-GNDKLYVPVEQI 550
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + + W++ K K + +++ + DL++LY R K
Sbjct: 551 DQ-VQKY-VGSEEKEPKIYA--LGGSDWKKVKKKVQSSVEDIADDLIKLYAEREASKGYA 606
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ K+ P AEF A F Y+ T DQ +A +++ D+ E+E PMDRL+CGDVG+GKTEVA+RA
Sbjct: 607 FSKDGPEQAEFEASFQYQETEDQLRAIEEIKEDM-EKERPMDRLLCGDVGYGKTEVAIRA 665
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ +L PT +LA+QH++ + ERFS+Y I +G+LSRF+S+ E+ L +K
Sbjct: 666 AFKAINDGKQVAILVPTTILAQQHYETIKERFSEYA-INIGVLSRFRSRKEQTTTLKGLK 724
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++++VGTH LL VV+ +LGLL+VDEEQRFGV KEKI + K ++DVLTL+ATPIP
Sbjct: 725 AGSIDLVVGTHRLLSKDVVFKDLGLLIVDEEQRFGVTHKEKIKTLKANIDVLTLTATPIP 784
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + AI+ EL RGGQ++++ R++
Sbjct: 785 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVENNAALIREAIERELTRGGQIYFLYNRVE 844
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E + + P ++ AHGQ R+LE + F +G +L+ T I+E+G+DI N
Sbjct: 845 DIERMTEQISNLVPDAKVSYAHGQMNERELEGVILDFLEGNSDVLVTTTIIETGVDIPNV 904
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I+ D + GL+QLYQ+RGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 905 NTLIIHDADKMGLSQLYQIRGRVGRSNRVAYAYFTYQRDKVLSEVAEKRLQAIKEFTELG 964
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + P++ V+
Sbjct: 965 SGFKIAMRDLTIRGAGNLLGSQQHGFIESVGFDLYSQMLKEAIEERKGDKPKEKPFR-VE 1023
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+ I+ +P YI + +EM + E I L + + ++G+ P ++E LL
Sbjct: 1024 LDVKIDAYIPESYIKDAKQKIEMYKRVKGIEE--IKELQDLQDEMIDRFGEYPKNVEYLL 1081
Query: 744 KKLYVRRMAADIGITKIYAS 763
+ + ++ ++ I +I S
Sbjct: 1082 RLTKIMLLSNELKIEQIVES 1101
>gi|417910409|ref|ZP_12554129.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU105]
gi|418620917|ref|ZP_13183710.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU123]
gi|341656183|gb|EGS79905.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU105]
gi|374830961|gb|EHR94714.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU123]
Length = 1166
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 390/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 486 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 538
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + ++ + +L++LY R
Sbjct: 539 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVVDIADELIDLYKEREMS 594
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 595 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 653
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 654 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 712
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 713 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 772
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 773 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 832
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 833 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 892
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 893 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 952
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 953 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEKSPDA 1012
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1013 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1070
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1071 ERLLDIVEIKVHALHAGVELIKDKGKSI 1098
>gi|325954433|ref|YP_004238093.1| transcription-repair coupling factor [Weeksella virosa DSM 16922]
gi|323437051|gb|ADX67515.1| transcription-repair coupling factor [Weeksella virosa DSM 16922]
Length = 1114
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 253/643 (39%), Positives = 382/643 (59%), Gaps = 42/643 (6%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI----KFDVQKDS------TVPIEYVFIEYADGMAKLPVK 202
SL+ GDYV H GIGKF G+ VQ++S I YV I ++K K
Sbjct: 425 SLQVGDYVTHIDYGIGKFAGLVRIENNGVQQESIKLFYQNNDILYVNIHSLHKISKFRGK 484
Query: 203 QASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
P+ +SKL + AW K K K ++++ DL++LY R QK
Sbjct: 485 DGVE-------------PK-ISKLG-SPAWRNLKNKTKTKVKEIAFDLIKLYAKRRTQKG 529
Query: 263 PPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
+ P E A F YE TPDQ+KA LDV+ D+ E E PMDRL+CGDVGFGKTEVA+
Sbjct: 530 FAFSPDTYLQNELEASFIYEDTPDQEKATLDVKNDM-ESERPMDRLVCGDVGFGKTEVAI 588
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F GKQ VL PT +LA QHF ++R ++P +++ L+RF + +K L
Sbjct: 589 RAAFKAAVDGKQVAVLVPTTILAFQHFKTFTDRLKEFP-VQIEYLNRFTTTKKKNAILAD 647
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
++ G ++II+GTH L+ +V + +LGLL++DEE +FGV K+K+ + + ++D LTL+ATP
Sbjct: 648 LEAGKVDIIIGTHQLVNPKVKFKDLGLLIIDEEHKFGVSVKDKLKTLRANIDTLTLTATP 707
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL +L RD S+I TPPP R P++T+L F++E + AI YE+ RGGQ+F++ R
Sbjct: 708 IPRTLQFSLMAARDLSVIKTPPPNRQPVETNLIEFNEEAIRDAILYEMQRGGQIFFIHNR 767
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
++ L+E +Q+ P IA HGQ +QLE M F G +LI T I+ESGLD+
Sbjct: 768 VQTLKEIAGMVQRLVPDARIATGHGQMDGKQLEAIMLDFIDGQYDVLISTTIIESGLDVP 827
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANTI++ D Q FGLA L+Q+RGRVGR++++A YL P S+L+++A +RL A+E+ +
Sbjct: 828 NANTILINDAQNFGLADLHQMRGRVGRSNRKAFCYLIAPPVSVLTNEARKRLQAIEQFSD 887
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD--------EHC 673
LG GF +A KD+ IRG G + G +QTG + +G + + ++L E++ ++ EH
Sbjct: 888 LGSGFNIAMKDLEIRGAGNLLGAEQTGFMMEIGFETYQKILNEAIEELKESDFKELFEHE 947
Query: 674 VIS--VPY-KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRR 730
S + Y K VQ+D ++ +P EY+N++E + + NE A+ + L +F +L
Sbjct: 948 KTSNFIEYVKDVQVDTDLEILIPDEYVNNVEERLALYNEL--ASIETAEELSKFENNLID 1005
Query: 731 QYGKEPYSMEILLKKLYVRRMAADIGITKI-YASGKMVGMKTN 772
++G P +E LL+ + ++ ++G+ +I +GK+ N
Sbjct: 1006 RFGPIPSPVENLLQSIKLKWKGKELGMERIVLKNGKLTAYFVN 1048
>gi|242241588|ref|ZP_04796033.1| transcription-repair coupling factor [Staphylococcus epidermidis
W23144]
gi|242234969|gb|EES37280.1| transcription-repair coupling factor [Staphylococcus epidermidis
W23144]
Length = 1166
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/628 (39%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 486 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 538
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 539 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 594
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ E+ PMDRL+CGDVG+GKTEV
Sbjct: 595 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-EKARPMDRLLCGDVGYGKTEV 653
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 654 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 712
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 713 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 772
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 773 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 832
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 833 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 892
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 893 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 952
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 953 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1012
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1013 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1070
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1071 ERLLDIVEIKVHALHAGVELIKDKGKSI 1098
>gi|418328257|ref|ZP_12939374.1| transcription-repair coupling factor [Staphylococcus epidermidis
14.1.R1.SE]
gi|418631642|ref|ZP_13194097.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU128]
gi|365232153|gb|EHM73164.1| transcription-repair coupling factor [Staphylococcus epidermidis
14.1.R1.SE]
gi|374834512|gb|EHR98152.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU128]
Length = 1166
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/628 (39%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 486 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 538
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 539 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 594
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ E+ PMDRL+CGDVG+GKTEV
Sbjct: 595 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-EKARPMDRLLCGDVGYGKTEV 653
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 654 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 712
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 713 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 772
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 773 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 832
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 833 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 892
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 893 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 952
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 953 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1012
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1013 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1070
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1071 ERLLDIVEIKVHALHAGVELIKDKGKSI 1098
>gi|408491198|ref|YP_006867567.1| transcription-repair coupling factor Mfd [Psychroflexus torquis ATCC
700755]
gi|408468473|gb|AFU68817.1| transcription-repair coupling factor Mfd [Psychroflexus torquis ATCC
700755]
Length = 1121
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 248/630 (39%), Positives = 373/630 (59%), Gaps = 24/630 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
SL GDYV H GIGKF G+ K DV+ E V + Y D + + ++
Sbjct: 431 SLEIGDYVTHIDHGIGKFGGLQKIDVEGKFQ---EAVKLFYGDRDILYLSIHSLHKISKF 487
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
N + K P+ + KL + AW+ K K K ++K+ DL++LY R +K Y P +
Sbjct: 488 N-GKDGKAPQ-VYKLG-SKAWKSLKNKTKARVKKVAFDLIKLYAKRKLEKGFQYGPDSHL 544
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E A F YE TPDQ A DV+ D+ E+E PMDRL+CGDVGFGKTE+A+RA F V
Sbjct: 545 QHELEASFIYEDTPDQGIATQDVKSDM-EKEQPMDRLVCGDVGFGKTEIAIRAAFKAVDN 603
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ VL PT +LA QH +ER S++P + V L+RF++ E+ L+ ++ G ++I+
Sbjct: 604 GKQVAVLVPTTILAFQHHKTFTERLSEFP-VTVDYLNRFRTTKERRSVLEGLEDGSVDIV 662
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ V + NLGLL++DEEQ+FGV K+K+ + K +VD LTL+ATPIPRTL +L
Sbjct: 663 IGTHQLVSKAVKFKNLGLLIIDEEQKFGVAVKDKLKTIKANVDTLTLTATPIPRTLQFSL 722
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S I TPPP R PI+TH+ FS++++ A+ YE++RGGQVF++ RI+ + E
Sbjct: 723 MAARDLSTIKTPPPNRYPIETHVIRFSEDQIRDAVSYEIERGGQVFFINNRIENINEVAG 782
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P I I HGQ ++LE M +F +L+ T I+ESGLD+ NANTI +
Sbjct: 783 LIQRLVPDAKIGIGHGQMEGKKLENLMLQFMNNEFDVLVSTTIIESGLDVTNANTIFINS 842
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FG++ L+Q+RGRVGR++K+A YL P ++++D A +RL+ALE+ +LG G +A
Sbjct: 843 ANNFGMSDLHQMRGRVGRSNKKAFCYLITPPLTMMTDDAKKRLSALEQFSDLGSGINIAM 902
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP-----------Y 679
KD+ IRG G + G +Q+G + ++G D + ++L E++ ++ E+ SV
Sbjct: 903 KDLEIRGAGDLLGGEQSGFISDIGFDTYQKILNEAIQELKENEFKSVYDEENAEEDQVFV 962
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
K QID + YIN ++ + + + ++D L F + L ++G P
Sbjct: 963 KDAQIDTDFEILFSDNYINSIKERLNLYTKLNSIQDED--GLANFEKELIDRFGDLPKEA 1020
Query: 740 EILLKKLYVRRMAADIGITK-IYASGKMVG 768
L+ + ++ +AA+IG+ K I GKM+G
Sbjct: 1021 RDLINSVRLKWIAANIGLEKLILKKGKMIG 1050
>gi|256820721|ref|YP_003142000.1| transcription-repair coupling factor [Capnocytophaga ochracea DSM
7271]
gi|256582304|gb|ACU93439.1| transcription-repair coupling factor [Capnocytophaga ochracea DSM
7271]
Length = 1109
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 244/627 (38%), Positives = 372/627 (59%), Gaps = 22/627 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYV H GIGKF G+ K +V+ I+ + Y D A + +YN
Sbjct: 428 LEVGDYVTHIDHGIGKFAGLQKIEVEGKQQEAIKLI---YGDRDVLFVSIHALHKITKYN 484
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ +P + KL + AW+ K K K ++++ +L++LY R + K Y + +
Sbjct: 485 --GKDGKPPKIYKLG-SGAWKALKQKTKTRVKEIAFNLIQLYAKRKESKGYAYSHDSYMQ 541
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E A F YE TPDQ KA +V+ D+ E PMDRL+CGDVGFGKTEVA+RA F V G
Sbjct: 542 NELEASFLYEDTPDQSKATAEVKADM-ESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNG 600
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT VLA QHF S+R +P +++ L+RF++ EK+ L+ + +G L+II+
Sbjct: 601 KQVAVLVPTTVLAFQHFQTFSQRMKDFP-VRIDYLNRFRTAKEKKIILEELANGQLDIII 659
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH ++G +V Y +LGLL+VDEEQ+FGV K+K+ + K ++DVLTL+ATPIPRTL +L
Sbjct: 660 GTHQIVGEKVAYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLM 719
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD S+I+TPPP R PI + + FS+E + I+YE+ RGGQVF++ R++ ++E
Sbjct: 720 AARDLSVINTPPPNRYPIDSQVVPFSEEIIRDGIRYEIQRGGQVFFMHNRVENIQEVAGM 779
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P +AI HGQ ++LEETM F GA +L+ T I+E+GLD+ NANTI + +
Sbjct: 780 IQRLLPDARVAIGHGQMDGKKLEETMLAFMDGAYDVLVATTIIENGLDVPNANTIFINNA 839
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+ L+Q+RGRVGR++K+A Y P +SD A +R+ A+ + +LG G +A K
Sbjct: 840 HNFGLSDLHQMRGRVGRSNKKAFCYFITPPLVAMSDGARKRIEAIAQFSDLGSGLNIAMK 899
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS---------V 682
D+ IRG G + G +Q+G + +G + + ++L E++ ++ E+ + + +
Sbjct: 900 DLEIRGAGDLLGGEQSGFINELGFETYQKILQEAIVELKENEFSELYHTAEEDKTYLTDT 959
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
QID + P Y+N + + + NE ++ L Q+ +L ++GK P L
Sbjct: 960 QIDTDFELLFPDTYVNRVAERLNLYNELSNLPNEE--ALQQYQRNLTDRFGKLPPQAIDL 1017
Query: 743 LKKLYVRRMAADIGITK-IYASGKMVG 768
L + V+ +A +GI K + +GKM G
Sbjct: 1018 LNSVRVKWLATRMGIEKLVMKNGKMTG 1044
>gi|148262223|ref|YP_001228929.1| transcription-repair coupling factor [Geobacter uraniireducens Rf4]
gi|146395723|gb|ABQ24356.1| transcription-repair coupling factor [Geobacter uraniireducens Rf4]
Length = 1159
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/620 (41%), Positives = 380/620 (61%), Gaps = 26/620 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK---FDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRML 208
L+ GDY+VH G+G + G++ FD + +++ +EYA G KL PV + + ++
Sbjct: 498 LKPGDYMVHIDFGVGIYRGLQHLTFDRMEG-----DFLLLEYA-GADKLYLPVDRIN-LV 550
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PK 267
RY + E P + KL WE+ K + + AIQ+M +L+++Y R ++ + P+
Sbjct: 551 QRY-VGAEGVEPH-VDKLGGA-GWEKTKARARAAIQEMAGELLKIYAARQVEEGHAFSPQ 607
Query: 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
+ EF A F +E TPDQ+ A DV D+ E + PMDRL+CGDVG+GKTEVA+R F
Sbjct: 608 DELYQEFEASFAFEETPDQQAAIEDVLHDM-ESKRPMDRLVCGDVGYGKTEVAMRGAFKA 666
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V GKQ +L PT +LA+QH + +ERF YP +KV +LSRF+S E++ L+ +K G +
Sbjct: 667 VMDGKQVALLVPTTILAQQHMETFAERFKAYP-VKVEMLSRFRSAKEQKAILEGVKKGEV 725
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+II+GTH LL VV+ +LGLL++DEEQRFGV KE++ F+ VD++TL+ATPIPRTLY
Sbjct: 726 DIIIGTHRLLQKDVVFKDLGLLIIDEEQRFGVSHKERLKQFRAVVDIMTLTATPIPRTLY 785
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
++L G RD S+I TPP +RL IKT ++ S E + A+ EL RGGQVF+V R++ +
Sbjct: 786 MSLMGIRDLSIIDTPPVDRLAIKTFVARSSDELIREAVLRELRRGGQVFFVHNRVQTIGA 845
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ LQQ P IA+ HGQ ++LE M F G +L+CT I+ESGLDI ANT+I
Sbjct: 846 MAEHLQQIVPEARIAVGHGQMDEKELERVMLGFMHGETNLLLCTTIIESGLDIPTANTLI 905
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
V FGL+QLYQLRGRVGR+ + A+AYL P + +S A ERL ++E ELG GF+
Sbjct: 906 VSRADTFGLSQLYQLRGRVGRSKQRAYAYLLIPGEGAISADARERLKIIQELTELGAGFR 965
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDI 686
+A D+ IRG G + G +Q+GD+ VG +L+ E+L E++ ++ E V +I +
Sbjct: 966 IATHDLEIRGAGDLLGARQSGDIAAVGFELYTELLEEAIRQLKGEELAERV---EPEIKL 1022
Query: 687 NINPRLPSEYINHLENPMEMVNEAEKA-AEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
I +P +Y+ + + + +A +E+DI +M L ++GK P + LL+
Sbjct: 1023 RIPAFVPEDYVREPNQRLIIYKKLSQATSEEDIGEIMA---ELVDRFGKLPLAATYLLEV 1079
Query: 746 LYVRRMAADIGITKIYASGK 765
+ +R + + +I GK
Sbjct: 1080 MRLRVTLKAMLVKEIEFDGK 1099
>gi|420174337|ref|ZP_14680789.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM061]
gi|420193855|ref|ZP_14699701.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM023]
gi|394245133|gb|EJD90454.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM061]
gi|394259379|gb|EJE04225.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM023]
Length = 1169
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/628 (39%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ E+ PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-EKARPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGVELIKDKGKSI 1101
>gi|418614860|ref|ZP_13177820.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU118]
gi|374818948|gb|EHR83083.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU118]
Length = 1166
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/628 (39%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 486 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 538
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 539 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 594
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ E+ PMDRL+CGDVG+GKTEV
Sbjct: 595 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-EKARPMDRLLCGDVGYGKTEV 653
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 654 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 712
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 713 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 772
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 773 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 832
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 833 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 892
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 893 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 952
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 953 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1012
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1013 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1070
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1071 ERLLDIVEIKVHALHAGVELIKDKGKSI 1098
>gi|315660330|ref|ZP_07913183.1| transcription-repair coupling factor [Staphylococcus lugdunensis
M23590]
gi|315494619|gb|EFU82961.1| transcription-repair coupling factor [Staphylococcus lugdunensis
M23590]
Length = 1173
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/630 (38%), Positives = 392/630 (62%), Gaps = 23/630 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L+ GDYVVH G+G+++G++ DV +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLKVGDYVVHVHHGVGRYLGVETLEVGDVHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K P+ L+KL + W++ K K + +++ + +L+ LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIALYKEREMS 597
Query: 261 KRPPYPKNPAIAE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
+ ++ A + F FPYE TPDQ K+ +++ D+ E + PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQFGEDTAEQQAFELDFPYELTPDQAKSIEEIKADM-ELQKPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E +
Sbjct: 657 AIRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLVSRFRTAKEVRKTK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLSKDIRYKDLGLLIVDEEQRFGVRHKERIKTLKTNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P IA+AHGQ R LEETM F G IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPEASIAVAHGQMTERDLEETMLSFINGDYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ +
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGITEETPDT 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
V++ +N++ LP+EYI + + +E+ + K + L + L ++ P +
Sbjct: 1016 PEVEMVLNLDAYLPAEYIQNEQAKIEIYKKLRKVENE--AQLDDIRDELMDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMVGM 769
E LL + ++ A G+T I GK V +
Sbjct: 1074 ERLLDSVQIKIHALRAGVTLIKDQGKTVDI 1103
>gi|238917833|ref|YP_002931350.1| transcription-repair coupling factor [Eubacterium eligens ATCC 27750]
gi|238873193|gb|ACR72903.1| transcription-repair coupling factor (superfamily II helicase)
[Eubacterium eligens ATCC 27750]
Length = 1206
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 243/612 (39%), Positives = 367/612 (59%), Gaps = 19/612 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYVVH+ GIG++ GI K V+ V +Y+ I YAD + L ++
Sbjct: 524 LNIGDYVVHENYGIGQYKGIEKIKVEG---VEKDYIKISYADNSNLYVLATQLDRLQKFA 580
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ K+P+ L+K+ + W + K+K A++++ DL+ELY R Q+ Y P
Sbjct: 581 GSDVEKKPK-LNKIG-GSEWGKTKSKVHSAVEEVAKDLVELYATR--QRIEGYQFGPDTV 636
Query: 273 ---EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF FPYE T DQ A D + D+ R MDRLICGDVG+GKTE+A+RA F V
Sbjct: 637 WQQEFEEMFPYEETTDQLNAIEDTKHDMESRRV-MDRLICGDVGYGKTEIAIRAAFKAVQ 695
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQ L PT VLA QHF +R +P + V LS F++ A+ +E ++ +K G ++I
Sbjct: 696 EGKQVAYLVPTTVLASQHFTTFEQRMKDFP-VTVAQLSSFRTSAQNKETIEELKKGMVDI 754
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH LL VV+ +LGLL++DEEQRFGV KEKI K +VDVLTLSATPIPRTL+++
Sbjct: 755 VIGTHRLLSKDVVFKDLGLLIIDEEQRFGVTHKEKIKKLKNNVDVLTLSATPIPRTLHMS 814
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
L G RD S++ PP +R+PI+T ++ + E + AI EL R GQV+YV R++ ++E
Sbjct: 815 LAGIRDMSVLEEPPVDRVPIQTFVTEHNDEMIREAITRELARNGQVYYVYNRVRSIDEAA 874
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+Q+ P ++A AHGQ R+LE+ M F G I +L+ T I+E+G+DI N NT+I++
Sbjct: 875 AHIQELVPDANVAYAHGQMAKRELEKIMCDFVNGEIDVLVSTTIIETGMDISNCNTMIIE 934
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D +FGL+QLYQLRGRVGR+ + A+A+L Y +L++ A +RL+ + E + G GF++A
Sbjct: 935 DADRFGLSQLYQLRGRVGRSSRTAYAFLLYRRDKVLTEVAEKRLSVIREFADFGSGFKIA 994
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYK-SVQIDINI 688
KD+ IRG G + G Q G + VG DL+ +ML ++++ + I Y+ ID+++
Sbjct: 995 MKDLEIRGAGNVLGNSQHGHMAAVGYDLYCKMLNQAVNNLKG---IKNEYEFETTIDVDV 1051
Query: 689 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+ +P+ YI +++ AA +++ L + L +YG P + LL +
Sbjct: 1052 DAYIPATYIKSEYQKLDIYKRI--AALENMDELSDMRDELSDRYGSVPSCADNLLMIALI 1109
Query: 749 RRMAADIGITKI 760
+ A +G+ +I
Sbjct: 1110 KSKAHKLGMIEI 1121
>gi|383763136|ref|YP_005442118.1| transcription-repair coupling factor [Caldilinea aerophila DSM 14535
= NBRC 104270]
gi|381383404|dbj|BAM00221.1| transcription-repair coupling factor [Caldilinea aerophila DSM 14535
= NBRC 104270]
Length = 1262
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 237/518 (45%), Positives = 338/518 (65%), Gaps = 11/518 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
++ GDYVVH + GIG+F G+ V EY+ + YA + +PV QA R L RY
Sbjct: 529 VKPGDYVVHIEHGIGRFEGLTR--MTIGGVEREYLLVSYAREDKLYVPVHQADR-LSRYI 585
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ P +++L T W+ K + + A+ ++ DL++LY R R PY P +P
Sbjct: 586 --GASDAPPVINRLG-TADWQIVKERARRAVAEIADDLLKLYAERELVIRDPYSPDSPWQ 642
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E A FPY+ T DQ A V+RD+ E E PMDRLICGDVG+GKTEVA+RA F ++ G
Sbjct: 643 EEMEAAFPYQETEDQLMAVEAVKRDM-ESERPMDRLICGDVGYGKTEVAIRAAFKAINDG 701
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ LAPT VLA+QH+ +S R +++P ++V +LSRF++ A++++ L+ ++ G ++I+V
Sbjct: 702 KQVAFLAPTTVLAQQHYRTISNRLARFP-VRVEMLSRFRTPAQQQKVLEGLRTGAVDIVV 760
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLL++DEEQRFGV QKE+I + +DVLTLSATPIPRTL+++L+
Sbjct: 761 GTHRLLSQDVEFKDLGLLIIDEEQRFGVAQKEQIKQLRTQIDVLTLSATPIPRTLHMSLS 820
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S I+TPP ER PI T L+ + V AI+ EL+R GQVF V R++ + +
Sbjct: 821 GIRDMSTINTPPKERQPIHTVLAEYDDVLVKQAIQRELNRKGQVFVVNDRVRDIYRLAER 880
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P +A+ HGQ R+LEE M +FA+G I +L+ T I+E+GLDI NANTII+
Sbjct: 881 IQRLVPEAVVAVGHGQMPERELEEVMMRFAEGEIDVLVATTIIENGLDIPNANTIIINRA 940
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA-LEECRELGQGFQLAE 630
FGLAQLYQLRGRVGR+ + H YL Y +LS A RL A LE ELG GF++A
Sbjct: 941 DHFGLAQLYQLRGRVGRSTRRGHCYLLYEKHKVLSYDARRRLEAILESSEELGAGFRIAM 1000
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK 668
+D+ IRG G I G +Q+G + ++G DL+ +L +++++
Sbjct: 1001 RDLEIRGAGDILGARQSGHIDSIGFDLYTRLLAQAINE 1038
>gi|374992836|ref|YP_004968335.1| transcription-repair coupling factor Mfd [Desulfosporosinus orientis
DSM 765]
gi|357211202|gb|AET65820.1| transcription-repair coupling factor Mfd [Desulfosporosinus orientis
DSM 765]
Length = 1177
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 248/625 (39%), Positives = 381/625 (60%), Gaps = 13/625 (2%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASR 206
KV L+ GD+VVH GIG+F GI + +V + +Y I YA G +L V
Sbjct: 496 KVFISDLKQGDFVVHVHHGIGQFTGIERLEV---GGIAKDYFGIRYA-GEDRLYVPLDQL 551
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPY 265
L + L + + L KL + W + K K + A+++M +DL++LY R Q
Sbjct: 552 HLLQKYLGSAGETLPKLYKLGGS-EWHKVKKKTRSAVKEMAIDLVKLYAKRETIQGYAFS 610
Query: 266 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
P N EF +FPY TPDQ ++ DV+ D+ R PMDRL+CGDVG+GKTEV LRA F
Sbjct: 611 PDNVWQNEFEDKFPYVETPDQLQSIQDVKADMM-RARPMDRLLCGDVGYGKTEVVLRAAF 669
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
V KQ VL PT +LA+QHF+ ERF+ YP I + +LSRF+S E++E + +K G
Sbjct: 670 KAVMDSKQVAVLVPTTILAQQHFNTFKERFTGYP-ITIEMLSRFRSLKEQKEIIQRLKEG 728
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
+++IVGTH +L V + +LGLLV+DEEQRFGV KEK+ + K +VDVLTLSATPIPRT
Sbjct: 729 KIDVIVGTHRILSEAVKFYDLGLLVIDEEQRFGVAHKEKLKTLKGNVDVLTLSATPIPRT 788
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L+++L G RD S+I TPP R P++T+++ F + V AI+ E+ RGGQVFYV R++ +
Sbjct: 789 LHMSLVGVRDMSVIETPPEGRYPVQTYVTEFRPDVVREAIRREIQRGGQVFYVHNRVEDM 848
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
++ FL + P +AHGQ R+LE+ M F + + +L+ T I+E+GLD+ NANT
Sbjct: 849 DQVTRFLSELVPEAKFGVAHGQMRERELEQVMLDFLEHEMDVLVSTTIIETGLDMPNANT 908
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
+I+ + ++GL+QLYQLRGRVGR++++A+ YL Y + +L++ A +RLAA+ E E G G
Sbjct: 909 LIIDEADRYGLSQLYQLRGRVGRSNRKAYTYLLYKPQKVLTEIAEKRLAAIREFTEFGAG 968
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
F++A +D+ IRG G + G QQ G + VG +++ +ML E++ ++ V V S I+
Sbjct: 969 FKIAMRDLEIRGAGNLIGAQQHGHLAAVGFEMYSQMLKEAVQEIRGEKVEEVTEPS--IE 1026
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ I+ LP Y+ + + ++ L + + L ++G P +E L++
Sbjct: 1027 LQIDAFLPDTYVTDSQTKASLYQRLGNVKNEN--QLSEMVDELVDRFGTPPREVEHLIEI 1084
Query: 746 LYVRRMAADIGITKIYASGKMVGMK 770
+ ++ +A+ + I ++ + V ++
Sbjct: 1085 IRLKILASALKIEQVQQVKQNVSLR 1109
>gi|328950754|ref|YP_004368089.1| transcription-repair coupling factor [Marinithermus hydrothermalis
DSM 14884]
gi|328451078|gb|AEB11979.1| transcription-repair coupling factor [Marinithermus hydrothermalis
DSM 14884]
Length = 985
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 260/616 (42%), Positives = 363/616 (58%), Gaps = 22/616 (3%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRML 208
DP +L GDY++H + GIG+F+GI + ++ V +Y+ ++YA DG LP++Q S +L
Sbjct: 324 DPDALSEGDYLIHPEHGIGRFLGI--ETREVLGVKRDYLVLQYAGDGRLYLPIEQLS-LL 380
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
R+ P T P LS+L W R K K + + + L L LH ++ P Y
Sbjct: 381 RRH--PGTTDDPPRLSRLGKNE-WARAKAKAQKDAEALAQRL--LVLHAKREATPGYAFT 435
Query: 269 PAI---AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
P FPY TPDQK+A + +DL E PMDRLI GDVGFGKTEVALRA
Sbjct: 436 PLPDWDPLIEKNFPYTLTPDQKRALEETLKDL-ETPRPMDRLISGDVGFGKTEVALRAAH 494
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
VV GKQ L PT +LA+QH++ RF P + +G+LSRF S E+ L+ +K G
Sbjct: 495 RVVGHGKQVAFLVPTTLLAQQHYETFCARFRDLP-VSIGMLSRFTSAREERRVLEGLKRG 553
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++I++GTH LL + V + +LGLL++DEE RFGV QKE++ + VDVLTLSATPIPRT
Sbjct: 554 AVDIVIGTHRLLSADVAFRDLGLLIIDEEHRFGVAQKERLKELREGVDVLTLSATPIPRT 613
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
LY AL G +D S I TPPP R PI+T L+ F V A+ +E++RGG+ FYV R+ +
Sbjct: 614 LYQALVGLKDVSSIQTPPPGRKPIRTILAPFDPALVREAVMFEIERGGKAFYVHDRVASI 673
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
+ +L+ P I + HGQ ++EE M F +GA +L+ T IVESGLDI ANT
Sbjct: 674 AQRAKYLEALIPEARIGVVHGQMPEDEIEEVMFLFQEGAFDLLVATTIVESGLDIPEANT 733
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
I+++ + GLA LYQLRGRVGR +KEA+AYLF+P K L++ A RLAA+ + +LG G
Sbjct: 734 ILIERADKLGLANLYQLRGRVGRREKEAYAYLFHPPK--LTEAAERRLAAIADLSDLGSG 791
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
LAEKDM IRG G + G +Q G + V +++ E+L E++ K+ + P K V +D
Sbjct: 792 HLLAEKDMEIRGVGNLLGPEQHGHIRAVSFEVYTELLAEAVRKLKGEA--ATPQKRVTLD 849
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYGKEPYSMEILLK 744
+ ++ RL EYI + K AE Q + L + L+ +YG P +E
Sbjct: 850 LAVSARLVPEYIP---DAAARSRYYGKFAELQSLAELARLVRELKARYGPPPREVEHFFA 906
Query: 745 KLYVRRMAADIGITKI 760
+R +A G+ I
Sbjct: 907 LTRLRLLAEKKGVLSI 922
>gi|429205500|ref|ZP_19196772.1| transcription-repair coupling factor [Lactobacillus saerimneri 30a]
gi|428146111|gb|EKW98355.1| transcription-repair coupling factor [Lactobacillus saerimneri 30a]
Length = 1186
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 259/634 (40%), Positives = 389/634 (61%), Gaps = 48/634 (7%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYA-DGMAKLPVKQ 203
SYK L+ GDYVVH GIG+++G+K +VQ +Y+ IEY D +PV Q
Sbjct: 494 SYK----DLKEGDYVVHVNHGIGRYIGMKTMEVQGKHQ---DYITIEYQKDDRLFIPVTQ 546
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVA--IQKMVVDLMELYLHRLKQK 261
R + +Y + E K P +++L + E +KTK +VA I+ + DL+ LY R +K
Sbjct: 547 LDR-IQKY-VSAEGKPPH-INRLGGS---EWKKTKHRVANKIEDIADDLIALYAKRDSEK 600
Query: 262 RPPYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320
+P + EF F Y TPDQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVA
Sbjct: 601 GHAFPPDDDYQREFEDAFAYTETPDQLRSAKEIKADM-EKPKPMDRLLIGDVGFGKTEVA 659
Query: 321 LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380
LRA F V GKQ +LAPT VLA+QH++ + ERF+ +P +++G+LSRF + + +E L
Sbjct: 660 LRAAFKAVEDGKQVALLAPTTVLAQQHYETMIERFNDFP-VEIGILSRFSTSKQVKETLT 718
Query: 381 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSAT 440
++ G L+IIVGTH LL V + +LGLL++DEEQRFGVK KE++ + +VDVLTL+AT
Sbjct: 719 ALREGRLDIIVGTHRLLSKDVQFADLGLLIIDEEQRFGVKHKERLKELRTNVDVLTLTAT 778
Query: 441 PIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLP 500
PIPRTL +++ G RD S+I TPP R PI+T++ + V+ AI+ EL+RGGQVFY+
Sbjct: 779 PIPRTLNMSMLGVRDLSVIETPPQNRYPIQTYVIEQNYGVVVDAIRRELERGGQVFYLHN 838
Query: 501 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
R++ +E+ + FL P I HGQ QLE T+ F G +L+ T I+E+G+DI
Sbjct: 839 RVEDIEQVVHFLNDLVPEARIVAIHGQMTEAQLERTLFDFIAGEYDVLVTTTIIETGVDI 898
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
N NT++V++ + GL+QLYQLRGRVGR+++ A+AY Y +L++ + +RL A+++
Sbjct: 899 PNVNTLLVENADRMGLSQLYQLRGRVGRSNRVAYAYFMYQPNKVLTEVSEKRLEAIKDFT 958
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYK 680
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ EML E+++K V P
Sbjct: 959 ELGSGFKIAMRDLAIRGAGNLLGKQQHGFIDSVGYDLYVEMLNEAIAKKRGQHV--TPKT 1016
Query: 681 SVQIDININPRLPSEYINHLENPMEMV-------NEAEKAAEQDIWCLMQFTESLRRQYG 733
+ +I+++I LP+ YI + +E+ NEA+ QD L ++G
Sbjct: 1017 NAEINLDIEGYLPATYIADPQQKIEIYKRISQFENEAQYREVQD---------DLIDRFG 1067
Query: 734 KEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 767
+ P ++ LL +IG+ K+YA +V
Sbjct: 1068 EYPQAVANLL----------EIGLLKVYADQALV 1091
>gi|23097518|ref|NP_690984.1| transcription-repair coupling factor [Oceanobacillus iheyensis
HTE831]
gi|22775741|dbj|BAC12019.1| transcription-repair coupling factor (TRCF) [Oceanobacillus iheyensis
HTE831]
Length = 1173
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 248/639 (38%), Positives = 389/639 (60%), Gaps = 26/639 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L+ GDYVVH G+GK++GI + + S + +Y+ I+Y+ D +P+ Q L +
Sbjct: 500 LKIGDYVVHANHGVGKYLGI--ETLEVSNLHKDYMLIKYSGDDKLFVPIDQID--LVQKF 555
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAI 271
+ +E K P+ L KL T W + K K + +++ + DL++LY R KQ P +
Sbjct: 556 VGSEAKEPK-LYKLG-GTEWTKVKRKVQSSVEDIADDLIKLYAEREAKQGYAFSPDSELQ 613
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A FPY+ T DQ + +++ D+ E+E PMDRL+CGDVG+GKTEVA+RA F +S G
Sbjct: 614 HEFEASFPYQETDDQLRCIQEIKEDM-EKERPMDRLLCGDVGYGKTEVAIRAAFKAISDG 672
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT +LA+QH++ + ERF YP I +GLLSRF++K ++ E +K G+++++V
Sbjct: 673 KQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTKKQQTETTKGLKSGNVDVVV 731
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L V Y +LGLL+VDEEQRFGVK KEKI K +VDVLTL+ATPIPRTL++++
Sbjct: 732 GTHRILSKDVEYKDLGLLIVDEEQRFGVKHKEKIKQLKTNVDVLTLTATPIPRTLHMSML 791
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T+++ ++ + AI+ E+ RGGQVF++ R++ +++
Sbjct: 792 GVRDLSVIETPPENRFPIQTYVTEYNPIFMREAIEREMGRGGQVFFLYNRVESIDKIARD 851
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L P IA+AHGQ +LE + F +G IL+ T I+E+G+DI N NT+IV
Sbjct: 852 LGMLVPEAKIAVAHGQMNESELENVIFSFLEGEFDILVSTTIIETGVDIPNVNTLIVNHA 911
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +
Sbjct: 912 DYMGLSQLYQLRGRVGRSNRVAYAYFTYQKDKVLTEVAEKRLQAIKEFTELGSGFKIAMR 971
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININ 689
D+ IRG G + G QQ G + +VG D++ +ML +++ K + P++ ++ + ++
Sbjct: 972 DLSIRGTGNLLGSQQHGFIDSVGFDMYSQMLKDAIDARKAGKEIEEITPFEP-ELSLKLD 1030
Query: 690 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+P EY+ + +E+ + + Q+ + + L ++G P +E L
Sbjct: 1031 AYIPDEYLEDEKQKIEIYKQFQTLDSQE--AIGDLKDELIDRFGDYPQEVEHLFT----- 1083
Query: 750 RMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSE 788
+ K+YA + V KK+ +M+ID S+
Sbjct: 1084 -----VSEMKMYAKTQRVESILETPKKI-EMLIDESRSQ 1116
>gi|393780177|ref|ZP_10368397.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
412 str. F0487]
gi|392608819|gb|EIW91653.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
412 str. F0487]
Length = 1109
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 244/627 (38%), Positives = 371/627 (59%), Gaps = 22/627 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYV H GIGKF G+ K +V+ I+ + Y D A + +YN
Sbjct: 428 LEVGDYVTHIDHGIGKFAGLQKIEVEGKQQEAIKLI---YGDRDVLFVSIHALHKITKYN 484
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ +P + KL + AW+ K K K ++++ +L++LY R + K Y + +
Sbjct: 485 --GKDGKPPKIYKLG-SGAWKALKQKTKTRVKEIAFNLIQLYAKRKESKGYAYSHDSYMQ 541
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E A F YE TPDQ KA +V+ D+ E PMDRL+CGDVGFGKTEVA+RA F V G
Sbjct: 542 NELEASFLYEDTPDQSKATAEVKADM-ESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNG 600
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT VLA QHF S+R +P +++ L+RF++ EK+ L+ + G L+II+
Sbjct: 601 KQVAILVPTTVLAFQHFQTFSQRMKDFP-VRIDYLNRFRTAKEKKIILEELAKGQLDIII 659
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH ++G +V Y +LGLL+VDEEQ+FGV K+K+ + K ++DVLTL+ATPIPRTL +L
Sbjct: 660 GTHQIVGEKVAYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLM 719
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD S+I+TPPP R PI + + FS+E + I+YE+ RGGQVF++ R++ ++E
Sbjct: 720 AARDLSVINTPPPNRYPIDSQVVPFSEEVIRDGIRYEIQRGGQVFFMHNRVENIQEVAGM 779
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P IAI HGQ ++LEETM F GA +L+ T I+E+GLD+ NANTI + +
Sbjct: 780 IQRLLPDARIAIGHGQMDGKKLEETMLAFMDGAYDVLVATTIIENGLDVPNANTIFINNA 839
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+ L+Q+RGRVGR++K+A Y P +SD A +R+ A+ + +LG G +A K
Sbjct: 840 HNFGLSDLHQMRGRVGRSNKKAFCYFITPPLVAMSDDARKRIEAIAQFSDLGSGLNIAMK 899
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS---------V 682
D+ IRG G + G +Q+G + +G + + ++L E++ ++ E+ + + +
Sbjct: 900 DLEIRGAGDLLGGEQSGFINELGFETYQKILQEAIVELKENEFSELYHTAEEDKTYLTDT 959
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
QID + P Y+N + + + NE ++ L Q+ +L ++GK P L
Sbjct: 960 QIDTDFELLFPDTYVNRVAERLNLYNELSNLPNEE--ALQQYQRNLTDRFGKLPPQAIDL 1017
Query: 743 LKKLYVRRMAADIGITK-IYASGKMVG 768
L + V+ +A +GI K + +GKM G
Sbjct: 1018 LNSVRVKWIATRMGIEKLVMKNGKMTG 1044
>gi|344202966|ref|YP_004788109.1| transcription-repair coupling factor [Muricauda ruestringensis DSM
13258]
gi|343954888|gb|AEM70687.1| transcription-repair coupling factor [Muricauda ruestringensis DSM
13258]
Length = 1152
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 247/629 (39%), Positives = 372/629 (59%), Gaps = 24/629 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYV H GIGKF G+ K DV+ I+ + Y D + + +YN
Sbjct: 456 LEIGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLI---YGDRDILYVSIHSLHKISKYN 512
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ P + KL + AW++ K K K ++K+ DL+++Y R +K Y P +
Sbjct: 513 --GKDGAPPKIFKLG-SAAWKKLKQKTKARVKKIAFDLIKVYAKRRLEKGFQYAPDSYLQ 569
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E A F YE TPDQ+K+ DV++D+ E E PMDRLICGDVGFGKTEVA+RA F V G
Sbjct: 570 HELEASFLYEDTPDQEKSTQDVKKDM-ESERPMDRLICGDVGFGKTEVAIRAAFKAVDNG 628
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT +LA QH SER + P + V L+RF++ EK E L+ ++ G ++II+
Sbjct: 629 KQVAILVPTTILAFQHHRTFSERLKEMP-VTVDYLNRFRTAKEKRETLENLESGKVDIII 687
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH L+ V + +LGLL+VDEEQ+FGV KEK+ S K +VDVLTL+ATPIPRTL +L
Sbjct: 688 GTHQLVNKNVKFKDLGLLIVDEEQKFGVSVKEKLRSIKENVDVLTLTATPIPRTLQFSLM 747
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD S+I+TPPP R PI++H+ ++E + A+ YE+ RGGQVF++ RI+ ++E
Sbjct: 748 AARDLSVINTPPPNRYPIESHVIRLNEEIIRDAVSYEIQRGGQVFFIHNRIENIKEVAGM 807
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQ+ P I I HGQ ++LE M F G +L+ T I+ESGLD+ NANTI + +
Sbjct: 808 LQRLVPDAKIGIGHGQMEGKKLENLMLSFMNGEFDVLVSTTIIESGLDVTNANTIFIHNA 867
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+ L+Q+RGRVGR++K+A Y P +++ +A +R+ ALE+ ELG GF +A K
Sbjct: 868 NNFGLSDLHQMRGRVGRSNKKAFCYFITPPYEVMTTEARKRIEALEQFTELGSGFNIAMK 927
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS-----------VPYK 680
D+ IRG G + G +Q+G + +G + + ++L E++ ++ E+ V K
Sbjct: 928 DLEIRGAGDLLGGEQSGFINEIGFETYQKILAEAIDELKENEFKELYEEVEGGKEKVYVK 987
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
+Q+D + P +YIN++ + + + +++ L +F L ++G+ P +
Sbjct: 988 EMQLDTDFELLFPDDYINNITERLNLYTQLNDVEDEE--GLQKFEAQLVDRFGELPEPVV 1045
Query: 741 ILLKKLYVRRMAADIGITK-IYASGKMVG 768
L+ + ++ +A IG+ K I GK +G
Sbjct: 1046 DLMNSVRIKWIATHIGLEKVIMKKGKFIG 1074
>gi|325288390|ref|YP_004264571.1| transcription-repair coupling factor [Syntrophobotulus glycolicus DSM
8271]
gi|324963791|gb|ADY54570.1| transcription-repair coupling factor [Syntrophobotulus glycolicus DSM
8271]
Length = 1182
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 251/626 (40%), Positives = 379/626 (60%), Gaps = 25/626 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
L+ GD+VVH GIGKF+GI K V + +Y I+YA G KL V L +
Sbjct: 500 DLKPGDFVVHLYHGIGKFIGIEKIGV---DGIEKDYFAIKYA-GEDKLYVPLDQIQLLQK 555
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
L + R L+KL + W + K++ + A+++M +DL+ELY R K + N
Sbjct: 556 YLGADADRAPKLNKL-NGNEWNKAKSRVRSAVKEMAIDLIELYAKRESSKGYVFSADNHW 614
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF +FPYE T DQ ++ ++++D+ + + MDRL+CGDVG+GKTEVA+RA F V+
Sbjct: 615 QKEFEDKFPYEETADQLQSIQEIKKDMMKSKV-MDRLLCGDVGYGKTEVAMRAAFKAVAD 673
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ +L PT +LA+QH+ ERF YP +K+ ++SRF++ E+++ + +K G ++II
Sbjct: 674 GKQVAILVPTTILAQQHYTTFQERFMDYP-VKIEMISRFRTAKEQKQIIRGLKDGTIDII 732
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ + + +LGLLVVDEEQRFGV KEKI + K +VDVLTLSATPIPRTL ++L
Sbjct: 733 IGTHKLVSEGIDFKDLGLLVVDEEQRFGVTHKEKIKALKTNVDVLTLSATPIPRTLQMSL 792
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+ISTPP +R P++T ++ F+ + V A++ E+ RGGQVFYV RI+ L+ +
Sbjct: 793 VGLRDMSVISTPPDDRYPVQTFVAEFNPDMVRDAVRREIHRGGQVFYVHNRIESLDRVLR 852
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L+ P + HGQ QLE M F + ILICT I+E+GLD+ N NT+IV +
Sbjct: 853 MLKSLVPEAKCGVVHGQMNETQLENEMISFLEKEKDILICTTIIETGLDMANVNTLIVDE 912
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+FGL+QLYQLRGRVGR++++A+AY Y +L+++A +RL+ + E E G GF++A
Sbjct: 913 ADRFGLSQLYQLRGRVGRSNRKAYAYFLYQPSKILTEEAEKRLSTIREFTEFGSGFKVAM 972
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G++ G +Q G + VG +L+ ML E++ ++ S IDI I
Sbjct: 973 RDLEIRGAGSLIGGEQHGHLAAVGFNLYVRMLKEAIQELRGEETEEQMEPS--IDIQIKA 1030
Query: 691 RLPSEYI------NHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
LP EYI L M ++ E+ +E + L ++G P +E L++
Sbjct: 1031 LLPDEYIIDKQAKATLYQRMIGISGEEEMSE--------MLDELVDRFGTPPQEVENLME 1082
Query: 745 KLYVRRMAADIGITKIYASGKMVGMK 770
+ +R A + I +I S + + ++
Sbjct: 1083 IIRIRYRAKTLKIDQIVQSRQEITLR 1108
>gi|331268338|ref|YP_004394830.1| transcription-repair coupling factor [Clostridium botulinum
BKT015925]
gi|329124888|gb|AEB74833.1| transcription-repair coupling factor [Clostridium botulinum
BKT015925]
Length = 1169
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 250/654 (38%), Positives = 406/654 (62%), Gaps = 24/654 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH GIG + GIK +VQ +Y+ + Y G +PV+Q ++ +Y
Sbjct: 501 LKPGDYVVHTNHGIGVYKGIKQLEVQGHKK---DYLELSYTAGDTLYVPVEQLD-LVQKY 556
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E K P+ ++KL + W + KTK K AI ++ +L++LY R K + K+
Sbjct: 557 -IGSEGKSPK-VNKLG-GSEWTKAKTKVKKAINEIAEELVKLYAIRSTLKGHKFNKDTIW 613
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FPY+ TPDQ A +++ D+ E MDRL+CGDVG+GKTEVA+RA F V
Sbjct: 614 QKQFEEEFPYDETPDQLTAIQEIKADM-ESGKAMDRLLCGDVGYGKTEVAVRAAFKAVMD 672
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH+ + +RF +P I + ++SRF++ A+ + L+ +K G+++++
Sbjct: 673 GKQVAFLVPTTILAEQHYTNLVQRFCDFP-INIEMISRFKTSAQVKNILNEVKLGNVDVL 731
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH +L V + +LGLL+VDEEQRFGV KEKI + K +VDVLTL+ATPIPRTL+++L
Sbjct: 732 IGTHRILQKDVAFKDLGLLIVDEEQRFGVTHKEKIKNLKKNVDVLTLTATPIPRTLHMSL 791
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG RD S+I TPP ER P++T++ F+ + + AI ELDR GQV++V R+ ++E
Sbjct: 792 TGIRDISVIETPPEERYPVQTYVVEFNDQLIEDAIARELDRDGQVYFVYNRVGSIKEMAA 851
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+L + FP + IAHGQ R+LE+ M F + IL+CT I+E+GLDIQNANT+I+ D
Sbjct: 852 YLAKMFPDSKVGIAHGQMPERELEKVMYDFMKKEYDILVCTTIIETGLDIQNANTMIIYD 911
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+FGL+QLYQLRGRVGR ++ A+AYL Y +L++ A +RL A+++ ELG GF++A
Sbjct: 912 SDKFGLSQLYQLRGRVGRTNRMAYAYLTYKKDKVLTEVAEKRLKAIKDFTELGSGFKIAM 971
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDI 686
+D+ IRG G + G Q G + +VG DL+ ML +++ ++D+ + +D+
Sbjct: 972 RDLEIRGAGNLIGAAQHGHMASVGYDLYCRMLEDTIKLVRGEIDKEPI------ETTVDL 1025
Query: 687 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
++ +PS YI +E+ + ++ +++ E L ++ P S++ L+
Sbjct: 1026 KVDAYIPSNYIRDEVQKIEVYKKIANIDSEE--SMIEIQEELEDRFSDIPSSVDNLINIA 1083
Query: 747 YVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 800
Y++ +A ++G+ ++ V +K + + + + ++ ++ S+ +N + GD+
Sbjct: 1084 YIKTIANNLGVIEVKEKPTEVIVKFSNKEYINQNLVKAIMSKYSKNVMFKLGDE 1137
>gi|42525214|ref|NP_970594.1| transcription-repair coupling factor [Bdellovibrio bacteriovorus
HD100]
gi|39577425|emb|CAE81248.1| transcription-repair coupling factor [Bdellovibrio bacteriovorus
HD100]
Length = 1172
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 256/637 (40%), Positives = 376/637 (59%), Gaps = 22/637 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYAD-GMAKLPVKQASRMLYRYN 212
L+ GD VVH K GIG++ G+K + S V EY+ + Y D LPV + + L +++
Sbjct: 513 LKPGDLVVHTKHGIGQYEGLK--IMNISGVESEYIQVGYKDKDKLYLPVYRVGQ-LQKFS 569
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAI 271
+ L KL T AWE+ K K K ++ + DL+ LY R + RP + K +
Sbjct: 570 GAGTS----ILDKLGGT-AWEKTKAKVKSHVRDIAADLLTLYAKRAEMHRPAFVIKEDEV 624
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
F FPYE T DQ +A D+ +DL + PMDRL+CGDVGFGKTEVA+RA F + A
Sbjct: 625 LMFENGFPYEETDDQLRAINDIRKDLKSTK-PMDRLVCGDVGFGKTEVAMRAAFFAIQAR 683
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VLAPT VL QHF+ +RF +P + + +L+RF + AE ++ L +K G +++IV
Sbjct: 684 KQVAVLAPTTVLTFQHFETFKKRFEGWP-VDIRVLNRFVTPAEVKKTLQDLKDGKVDLIV 742
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LLGS + Y +LGLL++DEEQ+FGV KEKI K SVD LTLSATPIPRTL +AL
Sbjct: 743 GTHKLLGSSIAYKDLGLLIIDEEQKFGVTHKEKIKKIKTSVDTLTLSATPIPRTLNMALV 802
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD SLI+T P +RLP +T ++ F E + AI E+ RGGQV+++ RI+ + +D
Sbjct: 803 GIRDLSLINTAPVDRLPTRTFVTKFDPETIRKAITAEISRGGQVYFIHNRIESIYGLVDE 862
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
++Q P I +AHGQ +LE+ M F I +L+CT IVESG+D+ ANT+ +
Sbjct: 863 IRQIVPEARIRVAHGQMEEHELEKAMLAFFHHEIDVLVCTAIVESGMDVPRANTMFIDTA 922
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQLRGRVGR+ A+ YL P L + ERL ++E LG G ++A+
Sbjct: 923 HLFGLSQLYQLRGRVGRSKTRAYCYLMMPRNHKLDKEQQERLKIIQENTALGSGIKIAQY 982
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ +RG G I GE+Q+G V +VG +++ ++L E+L++ V + ++++ I
Sbjct: 983 DLELRGSGNILGEEQSGHVNSVGYEMYMDLLNEALAEAKGESVEDMDLDP-ELNLKIPAL 1041
Query: 692 LPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+P YI + + A+ + +D L + E LR Q+G P L+ + +RR
Sbjct: 1042 IPDAYIKDIRIRLGYYKALADITSNED---LDRIEEELRDQFGPIPEQTVNLMGLMLIRR 1098
Query: 751 MAADIGITKIYASGKMVGM----KTNMN-KKVFKMMI 782
++G+ I A K + + KT ++ +KV ++ I
Sbjct: 1099 QCKELGVRDISAGLKSISLIFTEKTKLSPEKVIQLAI 1135
>gi|346311312|ref|ZP_08853319.1| hypothetical protein HMPREF9452_01188 [Collinsella tanakaei YIT
12063]
gi|345901142|gb|EGX70950.1| hypothetical protein HMPREF9452_01188 [Collinsella tanakaei YIT
12063]
Length = 1209
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 247/629 (39%), Positives = 384/629 (61%), Gaps = 13/629 (2%)
Query: 152 YSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYR 210
+ + GDYVVH GI F I Q+ +Y +EYADG +P++Q R + R
Sbjct: 527 FPFKPGDYVVHATHGIALFSEIVR--QEVGGRERDYFLLEYADGDKLYVPLEQVDR-ITR 583
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNP 269
Y P+ PR L++L +T W R K + + +K+ DL++LY R + P P
Sbjct: 584 YVGPDGAN-PR-LTRL-NTADWTRATNKARKSAKKLAFDLVDLYTRRSSITGYSFGPDTP 640
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
E FPYEPT DQ A D++ D+ E PMDRL+CGDVGFGKTEVALRA F V
Sbjct: 641 DQIEMEESFPYEPTHDQLDAIADIKGDM-ESSKPMDRLLCGDVGFGKTEVALRAAFKCVD 699
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
G+Q MVL PT +LA+QH++ ERF+ + ++V +LSRF++ A++ L G +++
Sbjct: 700 GGRQVMVLCPTTILAQQHYETFFERFAPF-GVEVEVLSRFRTAAQQRRALAAFAEGKVDV 758
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
+VGTH LL + V NNLGL+++DEEQRFGV+ KE++ + + +DVLTLSATPIPRT+ +A
Sbjct: 759 LVGTHRLLSADVNPNNLGLVIIDEEQRFGVQHKEQLKNLREQIDVLTLSATPIPRTMQMA 818
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
++G RD SLI+TPP R P+ H+ + + V +AI+ ELDRGGQV+YV R+K +++ +
Sbjct: 819 ISGVRDMSLITTPPTGRRPVIVHVGEYDPDVVSAAIRLELDRGGQVYYVSNRVKTIDDAV 878
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+ + + P + +AHG+ R++E+ M +FA G I +L+ T I+ESG+D ++NT+I++
Sbjct: 879 ERVHEVVPEARVGVAHGKMSPREVEDVMVQFATGKIDVLVATTIIESGIDNPHSNTLIIE 938
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D Q+ GLAQLYQL+GRVGR+ +A+AY +P + L+++A ERL AL E ++LG G ++A
Sbjct: 939 DSQRLGLAQLYQLKGRVGRSATQAYAYFMFPGELPLTEEATERLMALSEFQDLGSGMRIA 998
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G++ G +Q G++ +VG DLF +ML +++++ V V I++ +
Sbjct: 999 MRDLEIRGAGSLVGAEQHGNLSSVGFDLFTQMLGQAVAEARGESGADVEESGVTINLPAD 1058
Query: 690 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
L EY+ ++ + + AA D+ + E +G+ P + L + +R
Sbjct: 1059 FFLSEEYLPAVDQRVLVYRRL--AAADDLASVDAVQEDCENSHGELPRAAANLFDRARIR 1116
Query: 750 RMAADIGITKI-YASGKMVGMKTNMNKKV 777
A +G+ I G++V ++ K V
Sbjct: 1117 IRAERLGLESISLTQGRLVFQGVDVPKNV 1145
>gi|429750096|ref|ZP_19283161.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
332 str. F0381]
gi|429166023|gb|EKY08039.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
332 str. F0381]
Length = 1117
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 243/627 (38%), Positives = 373/627 (59%), Gaps = 22/627 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYV H GIGKF G+ K +V+ I+ + Y D A + +YN
Sbjct: 436 LEVGDYVTHIDHGIGKFAGLQKIEVEGKQQEAIKLI---YGDRDVLFVSIHALHKITKYN 492
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ +P + KL + AW+ K K K ++++ +L++LY R + + + + +
Sbjct: 493 --GKDGKPPKIYKLG-SGAWKALKQKTKARVKEIAFNLIQLYAKRKEAQGYAFAHDSYMQ 549
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E A F YE TPDQ KA +V+ D+ E PMDRL+CGDVGFGKTEVA+RA F V G
Sbjct: 550 HELEASFLYEDTPDQSKATAEVKADM-ESTKPMDRLVCGDVGFGKTEVAIRAAFKAVDNG 608
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT VLA QH+ S+R +P +++ L+RF++ EK+ L+ + G L+I++
Sbjct: 609 KQVAVLVPTTVLAFQHYQTFSQRMKDFP-VRIDYLNRFRTAKEKKIILEELAKGQLDIVI 667
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH ++G +V Y +LGLL+VDEEQ+FGV K+K+ + K ++DVLTL+ATPIPRTL +L
Sbjct: 668 GTHQIVGEKVQYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLM 727
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD S+I+TPPP R PI + + FS+E + I+YE+ RGGQVF++ R++ + E
Sbjct: 728 AARDLSVINTPPPNRYPIDSQVIPFSEEVIRDGIRYEIQRGGQVFFMHNRVENIREVAGM 787
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P IAI HGQ ++LEETM F +GA +L+ T I+ESGLD+ NANTI + +
Sbjct: 788 IQRLLPDARIAIGHGQMEGKKLEETMLAFMEGAYDVLVATTIIESGLDVPNANTIFINNA 847
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+ L+Q+RGRVGR++K+A Y P +SD A +R+ A+ + +LG G +A K
Sbjct: 848 HNFGLSDLHQMRGRVGRSNKKAFCYFITPPLIAMSDDARKRIEAIAQFSDLGSGLNIAMK 907
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYK---------SV 682
D+ IRG G + G +Q+G + +G D + ++L E+++++ E+ ++ +
Sbjct: 908 DLEIRGAGDLLGGEQSGFINEIGFDTYQKILQEAITELKENEFSALYHTEEENKTYLVDT 967
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
QID + P Y+N + + + NE ++D L ++ +L ++GK P L
Sbjct: 968 QIDTDFELLFPDTYVNRVAERLNLYNELSNITDED--ALQKYERNLIDRFGKLPPQAIDL 1025
Query: 743 LKKLYVRRMAADIGITK-IYASGKMVG 768
L + V+ +A +GI K + +GKM G
Sbjct: 1026 LNSVRVKWLATRMGIEKLVMKNGKMTG 1052
>gi|282915821|ref|ZP_06323589.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus D139]
gi|282320312|gb|EFB50654.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus D139]
Length = 1168
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/629 (38%), Positives = 392/629 (62%), Gaps = 21/629 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS-- 681
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E+ V+E I P
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEA---VNEKRGIKEPESDVP 1015
Query: 682 -VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V++D+N++ LP+EYI + + +E+ + K D ++ + L ++ P +
Sbjct: 1016 EVEVDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVA 1073
Query: 741 ILLKKLYVRRMAADIGITKIYASGKMVGM 769
LL + ++ A GIT I GK++ +
Sbjct: 1074 RLLDIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|420200971|ref|ZP_14706608.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM031]
gi|394267353|gb|EJE11949.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM031]
Length = 1169
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/628 (39%), Positives = 390/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ E+ PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-EKARPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 ERLKSGYVDIVVGTHKLLGKDIQYKYLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGVELIKDKGKSI 1101
>gi|283768938|ref|ZP_06341847.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus H19]
gi|283461119|gb|EFC08205.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus H19]
Length = 1168
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/629 (38%), Positives = 392/629 (62%), Gaps = 21/629 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS-- 681
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E+ V+E I P
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEA---VNEKRGIKEPESDVP 1015
Query: 682 -VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V++D+N++ LP+EYI + + +E+ + K D ++ + L ++ P +
Sbjct: 1016 EVEVDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVA 1073
Query: 741 ILLKKLYVRRMAADIGITKIYASGKMVGM 769
LL + ++ A GIT I GK++ +
Sbjct: 1074 RLLDIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|392409977|ref|YP_006446584.1| transcription-repair coupling factor Mfd [Desulfomonile tiedjei DSM
6799]
gi|390623113|gb|AFM24320.1| transcription-repair coupling factor Mfd [Desulfomonile tiedjei DSM
6799]
Length = 1203
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 258/623 (41%), Positives = 378/623 (60%), Gaps = 32/623 (5%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKD-STVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L G+ VVH+ GIG + G+ V+K+ V E + IEYA G + PV++ +++ +Y
Sbjct: 516 LAEGEPVVHEDYGIGIYRGL---VRKEFDGVVGEVMLIEYAGGDLLYHPVERL-QVIQKY 571
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
+E P + KL W + K + K +I++M +L+E+Y R +R Y P +
Sbjct: 572 IAGSE--EPPRIDKLG-GKGWVKIKARIKKSIKEMAGELLEIYAKRQVTRRSAYSPPDEN 628
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
A F A F +E TPDQ +A DV + + + PMDRL+CGDVG+GKTEVALRA F +
Sbjct: 629 FAAFEASFDFEETPDQARAIQDVMESM-DTDMPMDRLVCGDVGYGKTEVALRAAFRAIMD 687
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
G+Q VL PT VLA+QHFD +RF YP I V +LSRF+S AE++E L ++ G ++++
Sbjct: 688 GRQVAVLVPTTVLAQQHFDTFKKRFRGYPFI-VDVLSRFRSNAEQKETLRQVEQGKVDLV 746
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
VGTH LL VV+ +LGLLVVDEEQRFGV KE++ +K VDVLTL+ATPIPRTL L+L
Sbjct: 747 VGTHRLLQKDVVFKDLGLLVVDEEQRFGVAHKERVKKYKAHVDVLTLTATPIPRTLNLSL 806
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG RD S+I TPP R I+T++ S+E V A+ EL+RGGQVFYV R++ +
Sbjct: 807 TGIRDLSVIETPPTNRQSIRTYVMRQSEEVVREALLKELNRGGQVFYVHNRVQSIARRTA 866
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
LQ+ P IAHGQ R+LE+ M F G IL+CT+I+ESGLDI ANTI+++
Sbjct: 867 ALQKLVPEGRFCIAHGQMAERELEQVMVDFLTGKYNILVCTSIIESGLDIPTANTIVIER 926
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGLA LYQLRGRVGR+ A+AYL P +++++ A++RL+ ++E LGQGF++A
Sbjct: 927 SDTFGLADLYQLRGRVGRSHVRAYAYLLTPPETMITPDAVKRLSVMQEYSSLGQGFRIAM 986
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+DM IRG G I G Q+G V VG +++ ++L +++ ++ S P +I + +
Sbjct: 987 RDMEIRGAGNILGTSQSGHVSLVGYEMYLDLLEDAIQELKGEE--SAPRIDPEIHLKMEV 1044
Query: 691 RLPSEYINHLENPMEMVNEAEKA--------AEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
+P +Y+ + M + KA E++I+ L YGK P + L
Sbjct: 1045 YIPDDYVPDTQQRMNLYKRLSKAETNSEIEDTEEEIFDL----------YGKPPIQVHHL 1094
Query: 743 LKKLYVRRMAADIGITKIYASGK 765
++ + +R +I I ++ +G+
Sbjct: 1095 IQVMRIRLAMKEIRILRLDYNGQ 1117
>gi|167766179|ref|ZP_02438232.1| hypothetical protein CLOSS21_00673 [Clostridium sp. SS2/1]
gi|167712259|gb|EDS22838.1| transcription-repair coupling factor [Clostridium sp. SS2/1]
Length = 1173
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/617 (39%), Positives = 376/617 (60%), Gaps = 15/617 (2%)
Query: 157 GDYVVHKKVGIGKFVGIKFDVQKDSTVPIE--YVFIEYADGMAKLPVKQASRMLYRYNLP 214
GDYVVH+K G+G + GI +K +T +E Y+ IEY G + A + +Y
Sbjct: 507 GDYVVHEKHGVGIYRGI----EKITTDGVEKDYISIEYQGGDNLFILASALDQIAKYASA 562
Query: 215 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 273
N ++P+ L KL W++ KT+ K ++ + +L++LY R ++ Y K+ E
Sbjct: 563 N-ARKPK-LHKLG-GNEWKKTKTRVKGQVKDIAEELVQLYALRQAKEGYVYDKDTVWQKE 619
Query: 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 333
F FPY+ T DQ A D +RD+ E + MDRLICGDVG+GKTEVA+RA F V GKQ
Sbjct: 620 FEELFPYDETQDQLNAIDDTKRDM-ESKKIMDRLICGDVGYGKTEVAIRAAFKAVDNGKQ 678
Query: 334 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 393
L PT +LA+QH++ ++RF YP I V ++SRF + E++E ++ +K+G +++++GT
Sbjct: 679 VAYLVPTTILAQQHYNTFAQRFHDYP-ITVRMMSRFCTAKEQKETIEGLKNGTVDVVIGT 737
Query: 394 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 453
H LL + Y NLGLLV+DEEQRFGV KEKI + K VDVL+LSATPIPRTL+++L G
Sbjct: 738 HRLLSKDMQYKNLGLLVIDEEQRFGVTHKEKIKTMKKDVDVLSLSATPIPRTLHMSLIGI 797
Query: 454 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 513
RD S++ PP +R I+T++ +++E V A+ E+ RGGQV+YV R+ + E LQ
Sbjct: 798 RDMSVLEEPPHDRRAIQTYVMEYNEELVKEAVYREMTRGGQVYYVYNRVNNIAEVTAELQ 857
Query: 514 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 573
+ P +A AHGQ R+LEE M F I +L+ T I+E+GLDI N NT+I+ D Q
Sbjct: 858 RLLPDAKVAFAHGQMKERELEEIMMGFMNHEIDVLVSTTIIETGLDIPNVNTMIIHDANQ 917
Query: 574 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 633
GL+QLYQLRGRVGR+++ A A+L Y +LL + A +RL A+ E +LG G+++A +D+
Sbjct: 918 LGLSQLYQLRGRVGRSNRNAFAFLMYKKNTLLKETAEKRLQAIREFTDLGSGYKIAMRDL 977
Query: 634 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 693
IRG G + G+ Q+G + VG DL+ +ML E++ ++ + + +D++IN +P
Sbjct: 978 EIRGAGNLLGQAQSGHMEAVGYDLYCKMLNEAVLRLKGELKDEDEFDTT-LDLDINAFIP 1036
Query: 694 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 753
S Y+ + +E+ +D + T+ L ++G+ P ++ LL Y++ +A
Sbjct: 1037 STYVYNEYQKLELYKRISSIESKD--EMEDMTDELIDRFGEMPKAVYNLLYVAYLKSLAH 1094
Query: 754 DIGITKIYASGKMVGMK 770
+T + G+ V +
Sbjct: 1095 HAYMTDVKQKGEKVSFE 1111
>gi|420150504|ref|ZP_14657662.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
335 str. F0486]
gi|394751907|gb|EJF35636.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
335 str. F0486]
Length = 1109
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 243/627 (38%), Positives = 372/627 (59%), Gaps = 22/627 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYV H GIGKF G+ K +V+ I+ + Y D A + +YN
Sbjct: 428 LEVGDYVTHIDHGIGKFAGLQKIEVEGKQQEAIKLI---YGDRDVLFVSIHALHKITKYN 484
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ +P + KL + AW+ K K K ++++ +L++LY R + K Y + +
Sbjct: 485 --GKDGKPPKIYKLG-SGAWKALKQKTKTRVKEIAFNLIQLYAKRKESKGYAYSHDSYMQ 541
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E A F YE TPDQ KA +V+ D+ E PMDRL+CGDVGFGKTEVA+RA F V G
Sbjct: 542 NELEASFLYEDTPDQSKATAEVKADM-ESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNG 600
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT VLA QHF S+R +P +++ L+RF++ EK+ L+ + +G L+II+
Sbjct: 601 KQVAVLVPTTVLAFQHFQTFSQRMKDFP-VRIDYLNRFRTAKEKKIILEELANGQLDIII 659
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH ++G +V Y +LGLL+VDEEQ+FGV K+K+ + K ++DVLTL+ATPIPRTL +L
Sbjct: 660 GTHQIVGEKVAYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLM 719
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD S+++TPPP R PI + + FS+E + I+YE+ RGGQVF++ R++ ++E
Sbjct: 720 AARDLSVMNTPPPNRYPIDSQVVPFSEEIIRDGIRYEIQRGGQVFFMHNRVENIQEVAGM 779
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P +AI HGQ ++LEETM F GA +L+ T I+E+GLD+ NANTI + +
Sbjct: 780 IQRLLPDARVAIGHGQMDGKKLEETMLAFMDGAYDVLVATTIIENGLDVPNANTIFINNA 839
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+ L+Q+RGRVGR++K+A Y P +SD A +R+ A+ + +LG G +A K
Sbjct: 840 HNFGLSDLHQMRGRVGRSNKKAFCYFITPPLVAMSDDARKRIEAIAQFSDLGSGLNIAMK 899
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS---------V 682
D+ IRG G + G +Q+G + +G + + ++L E++ ++ E+ + + +
Sbjct: 900 DLEIRGAGDLLGGEQSGFINELGFETYQKILQEAIVELKENEFSELYHTAEEDKTYLTDT 959
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
QID + P Y+N + + + NE ++ L Q+ +L ++GK P L
Sbjct: 960 QIDTDFELLFPDTYVNRVAERLNLYNELSNLPNEE--ALQQYQRNLTDRFGKLPPQAIDL 1017
Query: 743 LKKLYVRRMAADIGITK-IYASGKMVG 768
L + V+ +A +GI K + +GKM G
Sbjct: 1018 LNSVRVKWIATRMGIEKLVMKNGKMTG 1044
>gi|374321394|ref|YP_005074523.1| transcription-repair coupling factor [Paenibacillus terrae HPL-003]
gi|357200403|gb|AET58300.1| transcription-repair coupling factor (TRCF) [Paenibacillus terrae
HPL-003]
Length = 1175
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 250/633 (39%), Positives = 389/633 (61%), Gaps = 33/633 (5%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQAS 205
++ YS L+ GDYVVH+ GIGK++GI + + +Y+ I YA G +P++Q
Sbjct: 482 RIKSYSELKVGDYVVHQNHGIGKYMGIG--TLEVGGIHKDYMHILYAGGDKLSVPIEQID 539
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
++ +Y + +E K P+ + KL W R K+K + ++Q + DL++LY R Q P +
Sbjct: 540 -LIQKY-VGSEDKEPK-IYKLG-GNEWTRVKSKVRSSVQDIADDLIKLYAER--QSAPGF 593
Query: 266 P---KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+P EF FPYE T DQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+R
Sbjct: 594 AFEKDSPEQQEFEDMFPYEETRDQIRAIEEIKKDM-EQSRPMDRLLCGDVGYGKTEVAIR 652
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F GKQ VL PT +LA+QH++ ERFS YP + +LSRF+S+ E+ E + +
Sbjct: 653 AAFKSAIEGKQVAVLVPTTILAQQHYETFRERFSGYP-FNIQVLSRFRSRKEQNETIKGV 711
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
+ G ++I++GTH LL +V+ +LG+L+VDEEQRFGV KEK+ K +VDVLTL+ATPI
Sbjct: 712 RQGTVDIVIGTHRLLSQDLVFKDLGMLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPI 771
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T++ S+ V AI+ E+ RGGQV+Y+ R+
Sbjct: 772 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIEREMARGGQVYYLYNRV 831
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+G++E + P + + HGQ +LE+T+ F G +L+ T+I+E+G+DI N
Sbjct: 832 QGIQEMAAEINALVPDAKVGVGHGQMSESELEKTILDFLDGEYDVLVSTSIIETGVDIPN 891
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E EL
Sbjct: 892 VNTLIVHDADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTEL 951
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCV----ISVP 678
G GF++A +D+ IRG G + G +Q G + +VG DL+ +ML E ++K + +S
Sbjct: 952 GSGFKIAMRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINKRKVSVLGEEDLSNR 1011
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
S ID+ ++ LP +YI +E+ + AA M+ + L ++G P
Sbjct: 1012 NWSTSIDLGVDAYLPGDYIYDSIQKIEIYKKV--AAVSTFDEAMELEDELVDRFGDLP-- 1067
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKMVGMKT 771
E +L L V R+ K+Y G+M G+++
Sbjct: 1068 -EAVLHLLAVARL-------KVY--GRMYGIES 1090
>gi|187777479|ref|ZP_02993952.1| hypothetical protein CLOSPO_01047 [Clostridium sporogenes ATCC 15579]
gi|187774407|gb|EDU38209.1| transcription-repair coupling factor [Clostridium sporogenes ATCC
15579]
Length = 1172
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/682 (36%), Positives = 413/682 (60%), Gaps = 32/682 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+ GD+VVH GIG F GIK ++Q + +E ++ ++D +PV+Q M+ RY
Sbjct: 505 LKPGDFVVHANHGIGVFKGIKQLELQGNKKDYLELIY--HSDDKLYVPVEQLD-MVQRY- 560
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+ +E K+P+ ++KL ++ W + K K K +I+++ DL++LY R K Y +
Sbjct: 561 IGSEGKKPK-VNKLG-SSEWTKTKNKVKKSIEEIAEDLVKLYAIRATLKGYKYSDDTVWQ 618
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F +FPYE TPDQ A D++RD+ E PMDRL+CGDVG+GKTEVA+RA F V G
Sbjct: 619 KQFEEEFPYEETPDQVLAIEDIKRDM-ESPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDG 677
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ +RFS +P + V ++SRF++ +E++ + IK G+++I++
Sbjct: 678 KQVAFLVPTTILAQQHYNNFKQRFSDFP-VTVDVISRFRTLSEQKATIKSIKEGNVDILI 736
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + + +LGLL++DEEQRFGVK KEK+ + K +VDVLTLSATPIPRTL+++L
Sbjct: 737 GTHRILQKDIKFKDLGLLIIDEEQRFGVKHKEKMKNLKKNVDVLTLSATPIPRTLHMSLV 796
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP ER P++T++ ++ + + +I E+ RGGQ+++V R++ + E +
Sbjct: 797 GVRDISVIETPPEERYPVQTYVVEYNDQLIRDSILREISRGGQIYFVYNRVESIHEMASY 856
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+ + P + IAHGQ ++LE + F + IL+ T I+E+G+DI+N NT+I+ D
Sbjct: 857 ISKLVPEGRVQIAHGQMKEKELENVVLDFTENKFDILVATTIIETGMDIKNVNTMIIYDA 916
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR ++ A+ YL Y +L++ A +RL A+++ ELG GF++A K
Sbjct: 917 DKMGLSQLYQLRGRVGRTNRMAYCYLTYKRDKILTEVAEKRLKAIKDFTELGSGFKIALK 976
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDIN 687
D+ IRG G + G Q G + ++G DL+ ML +++ +D+ V +++
Sbjct: 977 DLEIRGAGNMMGSAQHGHMASIGYDLYCRMLEDTIKLVRGDIDKEPV------ETSVELK 1030
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
I+ +P+ YI +E+ + ++ + M E L ++ P S+ L+ Y
Sbjct: 1031 IDAYIPNTYIKDETQKIEVYKKIASIDSKEEF--MDIEEELEDRFSDIPISVYNLMNISY 1088
Query: 748 VRRMAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEV-----HRNSLTFEG 798
+R + + + +I V K+++ +K+ K+++D + +V + ++ +
Sbjct: 1089 IRSLGKKLDVEEIKEISNEVVFQFEDKSSLKEKIVKIIMDKYSKQVAFKLSEKPAIGYSI 1148
Query: 799 DQIKAELLLELPREQLLNWIFQ 820
IK E +L + ++ L +I +
Sbjct: 1149 KNIKKEQVLSVIKD-FLEYIVE 1169
>gi|3511015|gb|AAD03810.1| transcription-repair coupling factor [Lactobacillus sakei]
Length = 1045
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 237/562 (42%), Positives = 364/562 (64%), Gaps = 13/562 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYAD-GMAKLPVKQAS 205
++ YS L+ GDYVVH GIG++VG++ ++ D V +Y+ I Y D G +PV Q
Sbjct: 490 RLKSYSELKPGDYVVHVNHGIGEYVGME-TLEVDG-VHQDYITILYRDNGKLFIPVTQLD 547
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
M+ +Y + E+K P+ ++KL W++ K+K I+ + DL+ELY R +K +
Sbjct: 548 -MVQKY-VSAESKTPK-INKLGGA-EWQKTKSKVSAKIEDIADDLIELYAQREAEKGYAF 603
Query: 266 PKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
PK+ + A+F QF Y T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 604 PKDDQLQADFENQFAYPETDDQLRSTAEIKHDM-EKVRPMDRLLVGDVGFGKTEVALRAA 662
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+AGKQ L PT +LA+QH++ + RF+ +P +++GLLSRF+++ E L ++
Sbjct: 663 FKAVAAGKQVAFLVPTTILAQQHYENMLARFADFP-VELGLLSRFKTRKEVTATLKGLEK 721
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL VV+ +LGLL+VDEEQRFGVK KE++ K VDVLTL+ATPIPR
Sbjct: 722 GQVDIVIGTHRLLSKDVVFKDLGLLIVDEEQRFGVKHKERLKQLKAQVDVLTLTATPIPR 781
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ EL+R GQVFY+ R+
Sbjct: 782 TLHMSMLGVRDLSVIETPPTNRYPIQTYVMEQNAGAMREAIERELERNGQVFYLHNRVSD 841
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E+ +D +Q P + AHGQ QLE + F QG +L+ T I+E+G+D+ N N
Sbjct: 842 IEQTVDEIQALVPEATVGYAHGQMTEAQLEGVIYDFVQGKYDVLVTTTIIETGVDMPNVN 901
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+IV+D +GL+QLYQLRGR+GR+ + A+ Y Y +L++ + +RL A+++ ELG
Sbjct: 902 TMIVEDADHYGLSQLYQLRGRIGRSSRVAYGYFMYKPDKVLTEVSEKRLQAIKDFTELGS 961
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E+++K V + + +I
Sbjct: 962 GFKIAMRDLSIRGAGNLLGKQQHGFIDSVGFDLYSQMLSEAVAKKQGKKVAA--KTNAEI 1019
Query: 685 DININPRLPSEYINHLENPMEM 706
D+ + LP +YIN +E+
Sbjct: 1020 DLKLEAYLPDDYINDQRQKIEI 1041
>gi|297622390|ref|YP_003703824.1| transcription-repair coupling factor [Truepera radiovictrix DSM
17093]
gi|297163570|gb|ADI13281.1| transcription-repair coupling factor [Truepera radiovictrix DSM
17093]
Length = 1006
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 261/632 (41%), Positives = 367/632 (58%), Gaps = 23/632 (3%)
Query: 138 GYNGA-GGFSYKV------DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFI 190
GY GA G K+ D L +GDY++H GIG+F+G+ + ++ V +Y+ +
Sbjct: 326 GYQGARAGGGKKLAGRRVQDAVQLSAGDYLIHPDHGIGRFMGL--EPRQVLGVTRDYLIL 383
Query: 191 EYAD-GMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVD 249
+YA G LPV+Q +L R+ P T P LS L T W R + + +V Q++ +
Sbjct: 384 QYAGAGKLYLPVEQLP-LLRRH--PGTTDDPPRLSTLG-TNEWARARERARVGAQELALK 439
Query: 250 LMELYLHRLKQKRPPYPKNPAIAEFAAQ-FPYEPTPDQKKAFLDVERDLTERETPMDRLI 308
L+ Y R Q+ P NP + P+E TPDQK A V D+ R PMDRLI
Sbjct: 440 LIRTYAERQLQQGLAMPANPEWDPLIDENCPFELTPDQKSATQAVLHDMA-RPVPMDRLI 498
Query: 309 CGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR 368
GDVGFGKTEVA+RA V GKQ +L PT VLAKQHF+ +ERF+ P + V LLSR
Sbjct: 499 SGDVGFGKTEVAIRAAHRAVGHGKQVAMLVPTTVLAKQHFETFAERFAGLP-VVVELLSR 557
Query: 369 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF 428
F + E + L +K G +++++GTH LL V + +LGLL+VDEE RFGV QKE++ +
Sbjct: 558 FSTDKEARDILAGLKAGTIDVVIGTHRLLSEEVAFKDLGLLIVDEEHRFGVGQKERMKAM 617
Query: 429 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYE 488
K ++DVL+LSATPIPRTLY++L G RD S I TPP R PI+T L F A+ +E
Sbjct: 618 KANLDVLSLSATPIPRTLYMSLVGLRDVSQIMTPPAGRKPIQTVLQPFDPMVAREAVMFE 677
Query: 489 LDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKIL 548
L+RGG+VFY+ R+ + +LQ+ P I +AHGQ +LEE M F GA +L
Sbjct: 678 LERGGKVFYIHDRVGSMGAKALWLQKLVPEARIGVAHGQMSGDELEEVMLNFQGGAYDVL 737
Query: 549 ICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQ 608
+ T IVESGLD+ ANT++++ + GLAQLYQLRGRVGR EA AYL YP + L++
Sbjct: 738 LATTIVESGLDVAGANTLLIERADKLGLAQLYQLRGRVGRRSTEAWAYLLYPGR--LTEG 795
Query: 609 ALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK 668
A RL AL E +LG G LAEKDM IRG G + G +Q G + V ++++ EML E ++K
Sbjct: 796 AQRRLFALAELNDLGSGHLLAEKDMEIRGVGNLLGPEQHGHISAVSLEVYTEMLAEEIAK 855
Query: 669 VDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESL 728
+ P ++V ID+N++ RL YI ++ + A + + + +
Sbjct: 856 LKGETQ-EAP-QAVAIDLNLDARLSPSYIA--DDDARIAFYGRLAETTSLAEVARVQREM 911
Query: 729 RRQYGKEPYSMEILLKKLYVRRMAADIGITKI 760
R +YG P + + + +R +AA G+ I
Sbjct: 912 RERYGPLPDEVRTFTELVKLRLLAAQKGVVTI 943
>gi|81429216|ref|YP_396217.1| transcription-repair coupling factor [Lactobacillus sakei subsp.
sakei 23K]
gi|78610859|emb|CAI55911.1| Transcription-repair coupling factor (TRCF) [Lactobacillus sakei
subsp. sakei 23K]
Length = 1173
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 254/681 (37%), Positives = 413/681 (60%), Gaps = 27/681 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYAD-GMAKLPVKQAS 205
++ YS L+ GDYVVH GIG++VG++ ++ D V +Y+ I Y D G +PV Q
Sbjct: 490 RLKSYSELKPGDYVVHVNHGIGEYVGME-TLEVDG-VHQDYITILYRDNGKLFIPVTQLD 547
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
M+ +Y + E+K P+ ++KL W++ K+K I+ + DL+ELY R +K +
Sbjct: 548 -MVQKY-VSAESKTPK-INKLGGA-EWQKTKSKVSAKIEDIADDLIELYAQREAEKGYAF 603
Query: 266 PKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
PK+ + A+F QF Y T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 604 PKDDQLQADFENQFAYPETDDQLRSTAEIKHDM-EKVRPMDRLLVGDVGFGKTEVALRAA 662
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V+AGKQ L PT +LA+QH++ + RF+ +P +++GLLSRF+++ E L ++
Sbjct: 663 FKAVAAGKQVAFLVPTTILAQQHYENMLARFADFP-VELGLLSRFKTRKEVTATLKGLEK 721
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL VV+ +LGLL+VDEEQRFGVK KE++ K VDVLTL+ATPIPR
Sbjct: 722 GQVDIVIGTHRLLSKDVVFKDLGLLIVDEEQRFGVKHKERLKQLKAQVDVLTLTATPIPR 781
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ EL+R GQVFY+ R+
Sbjct: 782 TLHMSMLGVRDLSVIETPPTNRYPIQTYVMEQNAGAMREAIERELERNGQVFYLHNRVSD 841
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E+ +D +Q P + AHGQ QLE + F QG +L+ T I+E+G+D+ N N
Sbjct: 842 IEQTVDEIQALVPEATVGYAHGQMTEAQLEGVIYDFVQGKYDVLVTTTIIETGVDMPNVN 901
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+IV+D +GL+QLYQLRGR+GR+ + A+ Y Y +L++ + +RL A+++ ELG
Sbjct: 902 TMIVEDADHYGLSQLYQLRGRIGRSSRVAYGYFMYKPDKVLTEVSEKRLQAIKDFTELGS 961
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E+++K V + + +I
Sbjct: 962 GFKIAMRDLSIRGAGNLLGKQQHGFIDSVGFDLYSQMLSEAVAKKQGKKVAA--KTNAEI 1019
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+ + LP +YIN +E+ + + + +Q L ++G P + LL
Sbjct: 1020 DLKLEAYLPDDYINDQRQKIEIYKRIRQMDTEAAFTEIQ--SDLIDRFGDYPVQVAHLLT 1077
Query: 745 KLYVRRMAADIGITKIYASGKMV-------GMKTNMNKKVFKMMIDSMTSEVHRNSLTFE 797
++ A D I I + G + +++F +++++ + ++ FE
Sbjct: 1078 IGQLKMNADDALIETIKQVKDKIQVVLSPKGSRLVSGEQIF----EALSATRLKATVGFE 1133
Query: 798 GDQIKAELLLELPREQLLNWI 818
+++ L+++ P+ + +W+
Sbjct: 1134 QEKLSVTLIIQ-PKMKTGDWL 1153
>gi|315223854|ref|ZP_07865702.1| transcription-repair coupling factor [Capnocytophaga ochracea F0287]
gi|420160030|ref|ZP_14666820.1| transcription-repair coupling factor [Capnocytophaga ochracea str.
Holt 25]
gi|314946184|gb|EFS98185.1| transcription-repair coupling factor [Capnocytophaga ochracea F0287]
gi|394761170|gb|EJF43596.1| transcription-repair coupling factor [Capnocytophaga ochracea str.
Holt 25]
Length = 1109
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 244/627 (38%), Positives = 372/627 (59%), Gaps = 22/627 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYV H GIGKF G+ K +V+ I+ + Y D A + +YN
Sbjct: 428 LEVGDYVTHIDHGIGKFAGLQKIEVEGKQQEAIKLI---YGDRDVLFVSIHALHKITKYN 484
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ +P + KL + AW+ K K K ++++ +L++LY R + K Y + +
Sbjct: 485 --GKDGKPPKIYKLG-SGAWKALKQKTKTRVKEIAFNLIQLYAKRKESKGYAYSHDSYMQ 541
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E A F YE TPDQ KA +V+ D+ E PMDRL+CGDVGFGKTEVA+RA F V G
Sbjct: 542 NELEASFLYEDTPDQSKATAEVKADM-ESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNG 600
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT VLA QHF S+R +P +++ L+RF++ EK+ L+ + +G L+II+
Sbjct: 601 KQVAVLVPTTVLAFQHFQTFSQRMKDFP-VRIDYLNRFRTAKEKKIILEELANGQLDIII 659
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH ++G +V Y +LGLL+VDEEQ+FGV K+K+ + K ++DVLTL+ATPIPRTL +L
Sbjct: 660 GTHQIVGEKVAYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLM 719
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD S+I+TPPP R PI + + FS+E + I+YE+ RGGQVF++ R++ ++E
Sbjct: 720 AARDLSVINTPPPNRYPIDSQVVPFSEEIIRDGIRYEIQRGGQVFFMHNRVENIQEVAGM 779
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P IAI HGQ ++LEETM F GA +L+ T I+E+GLD+ NANTI + +
Sbjct: 780 IQRLLPDARIAIGHGQMDGKKLEETMLAFMDGAYDVLVATTIIENGLDVPNANTIFINNA 839
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+ L+Q+RGRVGR++K+A + P +SD A +R+ A+ + +LG G +A K
Sbjct: 840 HNFGLSDLHQMRGRVGRSNKKAFCFFITPPLVAMSDDARKRIEAIAQFSDLGSGLNIAMK 899
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS---------V 682
D+ IRG G + G +Q+G + +G + + ++L E++ ++ E+ + + +
Sbjct: 900 DLEIRGAGDLLGGEQSGFINELGFETYQKILQEAIVELKENEFSELYHTAEEDKTYLTDT 959
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
QID + P Y+N + + + NE ++ L Q+ +L ++GK P L
Sbjct: 960 QIDTDFELLFPDTYVNRVAERLNLYNELSNLPNEE--ALQQYQRNLIDRFGKLPPQAIDL 1017
Query: 743 LKKLYVRRMAADIGITK-IYASGKMVG 768
L + V+ +A +GI K + +GKM G
Sbjct: 1018 LNSVRVKWIATRMGIEKLVMKNGKMTG 1044
>gi|426405728|ref|YP_007024699.1| transcription-repair coupling factor [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425862396|gb|AFY03432.1| transcription-repair coupling factor [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 1172
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 257/639 (40%), Positives = 374/639 (58%), Gaps = 26/639 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYAD-GMAKLPVKQASRMLYRYN 212
L+ GD VVH K GIG++ G+K + S V EY+ + Y D LPV + + L +++
Sbjct: 513 LKPGDLVVHTKHGIGQYEGLK--IMNISGVESEYIQVGYKDKDKLYLPVYRVGQ-LQKFS 569
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP-KNPAI 271
+ L KL TAWE+ K K K ++ + DL+ LY R + RP + K +
Sbjct: 570 GAGTS----ILDKLG-GTAWEKTKAKVKSHVRDIAADLLALYAKRAEMHRPAFVIKEDEV 624
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
F FPYE T DQ +A D+ +DL + PMDRL+CGDVGFGKTEVA+RA F + A
Sbjct: 625 LMFDNGFPYEETDDQLRAINDIRKDLKSTK-PMDRLVCGDVGFGKTEVAMRAAFFAIQAR 683
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VLAPT VL QHF+ +RF +P + + +L+RF + AE ++ L +K G +++IV
Sbjct: 684 KQVAVLAPTTVLTFQHFETFKKRFEGWP-VDIRVLNRFVTPAEVKKTLQDLKDGKVDLIV 742
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LLGS + Y +LGLL++DEEQ+FGV KEKI K SVD LTLSATPIPRTL +AL
Sbjct: 743 GTHKLLGSSIAYKDLGLLIIDEEQKFGVTHKEKIKKIKTSVDTLTLSATPIPRTLNMALV 802
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD SLI+T P +RLP +T ++ F E + A+ E+ RGGQV+++ RI+ + +D
Sbjct: 803 GIRDLSLINTAPVDRLPTRTFVTKFDAETIRKAVTAEISRGGQVYFIHNRIESIYGLVDE 862
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L+Q P I +AHGQ +LE+ M F I +L+CT IVESG+D+ ANT+ +
Sbjct: 863 LRQIVPEARIRVAHGQMEEHELEKAMLAFFHHEIDVLVCTAIVESGMDVPRANTMFIDTA 922
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQLRGRVGR+ A+ YL P L + ERL ++E LG G ++A+
Sbjct: 923 HLFGLSQLYQLRGRVGRSKTRAYCYLMMPRNHKLDKEQQERLKIIQENTALGSGIKIAQY 982
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ +RG G I GE+Q+G V +VG +++ ++L E+L++ V + ++++ I
Sbjct: 983 DLELRGSGNILGEEQSGHVNSVGYEMYMDLLNEALAEAKGESVEDMDLDP-ELNLKIPAL 1041
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWC---LMQFTESLRRQYGKEPYSMEILLKKLYV 748
+P YI + + A DI L + E LR Q+G P L+ + +
Sbjct: 1042 IPDAYIKDIR-----IRLGYYKALADITSNEELDRIEEELRDQFGPIPEQTVNLMGLMLI 1096
Query: 749 RRMAADIGITKIYASGKMVGM----KTNMN-KKVFKMMI 782
RR ++G+ I A K + + KT ++ +KV ++ I
Sbjct: 1097 RRQCKELGVRDISAGLKSISLIFTEKTKLSPEKVIQLAI 1135
>gi|298253895|ref|ZP_06977482.1| transcription-repair coupling factor [Gardnerella vaginalis 5-1]
gi|297532038|gb|EFH71013.1| transcription-repair coupling factor [Gardnerella vaginalis 5-1]
Length = 1202
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 247/628 (39%), Positives = 377/628 (60%), Gaps = 20/628 (3%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVP-----IEYVFIEYADGMAKLPVKQ 203
+D L+ GD+VVH++ GIG FVG+K Q++ V EY+ IEYA P +
Sbjct: 522 IDLMELKPGDFVVHEQHGIGCFVGMK---QRNIAVSGGSATREYLVIEYAPSKRNAPNDK 578
Query: 204 ASRMLYRYNLPNE---TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
+ +L ++ + P+ L+KL + W + K K K + ++ +L++LY R +
Sbjct: 579 LFIPTDQLDLVSKYIGAEIPK-LNKLGGSD-WAQTKAKAKKHVHEIAENLIKLYSARQQS 636
Query: 261 KRPPYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
+ + K+ P E FPY+ T DQ +V+ D+ E PMDRLICGDVGFGKTE+
Sbjct: 637 RGFAFSKDTPWQKELEDAFPYQETADQLTTIDEVKADM-ENPIPMDRLICGDVGFGKTEI 695
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
ALRA F V KQ +VL PT +L +QH++ + RF +P +KV +SRFQ+ E EE L
Sbjct: 696 ALRAAFKAVQDSKQVVVLVPTTLLVQQHYETFTNRFEGFP-VKVAAMSRFQTSKEIEETL 754
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
++ G +++++GTH LL + + +LGL+++DEEQRFGV+ KE + + + +VDVL+LSA
Sbjct: 755 AGLQDGSIDVVIGTHKLLNPSIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSA 814
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL +A+TG R+ S ++TPP +RLP+ T++ A+ +V + IK EL RGGQVFYV
Sbjct: 815 TPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYDNSQVAACIKRELLRGGQVFYVH 874
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
R++ + +Q+ P V +AIAHG+ +QL+ + F I +L+CT I+E+GLD
Sbjct: 875 NRVEDISSVASKIQELVPDVRVAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIIETGLD 934
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
I NANT+IV +FGL+QL+QLRGRVGR + A+AY Y ++ Q+ +RL+ + +
Sbjct: 935 ISNANTLIVDHADRFGLSQLHQLRGRVGRGHERAYAYFLYDPSKPMTQQSHDRLSTIAQH 994
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
LG GF +A KD+ +RG G + G++Q+G + VG DL+ M+ E++ K E V
Sbjct: 995 TALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEAVEKYKEPE--RVEP 1052
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
V ID+ + LP +YI + + + + AA +D L + + L ++G P
Sbjct: 1053 VCVTIDLPVEASLPVDYI--ASDKLRLEAYRKLAAAKDNSDLRELHDELLDRFGNPPEEF 1110
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E L +R A +IGIT+I + GK V
Sbjct: 1111 ESLCDVARLRFKAREIGITQISSQGKSV 1138
>gi|418635176|ref|ZP_13197560.1| transcription-repair coupling factor [Staphylococcus lugdunensis
VCU139]
gi|374842125|gb|EHS05572.1| transcription-repair coupling factor [Staphylococcus lugdunensis
VCU139]
Length = 1173
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/630 (38%), Positives = 391/630 (62%), Gaps = 23/630 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L+ GDYVVH G+G+++G++ DV +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLKVGDYVVHVHHGVGRYLGVETLEVGDVHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K P+ L+KL + W++ K K + +++ + +L+ LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIALYKEREMS 597
Query: 261 KRPPYPKNPAIAE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
+ ++ A + F FPYE TPDQ K+ +++ D+ E + PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQFGEDTAEQQAFELDFPYELTPDQAKSIEEIKADM-ELQKPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E +
Sbjct: 657 AIRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLVSRFRTAKEVRKTK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLSKDIRYKDLGLLIVDEEQRFGVRHKERIKTLKTNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P IA+AHGQ R LEETM F G IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPEASIAVAHGQMTERDLEETMLSFINGDYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLTETAEDRLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ +
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGITEETQDT 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
V + +N++ LP+EYI + + +E+ + K + L + L ++ P +
Sbjct: 1016 PEVGMVLNLDAYLPAEYIQNEQAKIEIYKKLRKVENE--AQLDDIRDELMDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMVGM 769
E LL + ++ A G+T I GK V +
Sbjct: 1074 ERLLDSVQIKIHALRAGVTLIKDQGKTVDI 1103
>gi|146296229|ref|YP_001180000.1| transcription-repair coupling factor [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409805|gb|ABP66809.1| transcription-repair coupling factor [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 1143
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 251/612 (41%), Positives = 383/612 (62%), Gaps = 17/612 (2%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+ G YVVH+ GIGKF+G F+ V EY+ +EYA+ + L V + +
Sbjct: 481 DLKYGSYVVHRTYGIGKFLG--FEKITVEGVTKEYLKLEYANN-SYLYVPTTNLDVIEKY 537
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAI 271
+ + P+ LSKL T W+++K K + +++ + D++ELY R LK+ P
Sbjct: 538 IGTDDSEPK-LSKLG-TLEWQKQKQKVRKSLEVVAKDIVELYAKRQLKKGFKFSPDTIWQ 595
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF +FPY T Q +A ++++D+ E E PMDR++CGDVG+GKTEVA+RA F V
Sbjct: 596 KEFEEKFPYTETEGQLQAIEEIKKDM-ESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDS 654
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT +LA+QH+ +R +P I + +LSR +S++++++ L +K G ++II+
Sbjct: 655 KQVAVLVPTTILAQQHYMTFVQRMKDFP-ITIEVLSRLKSESQQKKILKALKDGTIDIII 713
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL + V + +LGLL++DEE +FGV+ KEKI K +VDVLTL+ATPIPRTL +AL
Sbjct: 714 GTHRLLSNDVKFKDLGLLIIDEEHKFGVEHKEKIKKLKENVDVLTLTATPIPRTLNMALL 773
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I PP +R P++T + ++++ + AI E+ RGGQVFY+ R+K +EE ++
Sbjct: 774 GIRDLSIIEDPPEDRFPVQTFVMEYNEKVIKEAILKEVSRGGQVFYLYNRVKDIEEVVNR 833
Query: 512 LQQAFPGVDIAIA--HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
LQ A G DI IA HGQ RQLEE + F G +L+CT I+ESG+D+ N NT+IV+
Sbjct: 834 LQ-ALLGEDIKIAYAHGQMDERQLEEVLIDFINGKYDVLVCTTIIESGVDMPNVNTLIVE 892
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GLAQLYQLRGRVGR++K A+AY + +LS++A +RL+A++E ELG GF++A
Sbjct: 893 DADRLGLAQLYQLRGRVGRSNKLAYAYFTFRKDKVLSEEAAKRLSAIKEFTELGSGFKIA 952
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G+I G+ Q G + VG D++ +L E + ++ + P QIDI +N
Sbjct: 953 MRDLEIRGAGSIVGKLQHGHINAVGYDMYIRLLSEEIRRLKGEEI--QPEIEPQIDIRVN 1010
Query: 690 PRLPSEYINHLENPMEMVNEAEKAAEQDI-WCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+ SEYI+ + E +N +K + D + + + L ++G P ++ L+K Y+
Sbjct: 1011 AYISSEYID---DDKERINMYKKISSIDTKEDVQEIYDELIDRFGDIPKEVDNLIKIAYI 1067
Query: 749 RRMAADIGITKI 760
+ + +GI I
Sbjct: 1068 KFLCKRLGILSI 1079
>gi|403670113|ref|ZP_10935279.1| transcription-repair coupling factor [Kurthia sp. JC8E]
Length = 1172
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 262/697 (37%), Positives = 411/697 (58%), Gaps = 38/697 (5%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI-----EYVFIEY-ADGMAKLPVKQASRM 207
++ GDYVVH GIGK++GI+ T+ + +Y+ I Y AD +PV Q +
Sbjct: 496 IKPGDYVVHVHHGIGKYIGIE-------TLEVGGKHKDYLNIVYRADDKLFVPVDQID-L 547
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-P 266
+ +Y + E K+P+ L KL T W++ K K A+Q + DL++LY R + Y P
Sbjct: 548 IQKY-VAAEDKKPK-LHKLGGT-EWQKTKRKVSSAVQDIADDLIKLYAKREAEVGFAYSP 604
Query: 267 KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
+ + +F FPYE T DQ + +V+ D+ ER PMDRL+CGDVG+GKTEVA+RA +
Sbjct: 605 DSDEMRQFELAFPYEETDDQLRTIREVKADM-ERARPMDRLVCGDVGYGKTEVAIRAAYK 663
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
+ GKQ L PT +LA+QHF+ + ERF + + VG+LSRF+++ ++ E + +K G
Sbjct: 664 AILDGKQVAFLVPTTILAQQHFETLQERFQDFA-VNVGMLSRFRTRKQQNETIKGLKEGT 722
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
++I+VGTH LL V+Y +LGLL+VDEEQRFGV KE+I + + +VDVLTL+ATPIPRTL
Sbjct: 723 VDIVVGTHRLLSKDVIYQDLGLLIVDEEQRFGVTHKERIKTLRTNVDVLTLTATPIPRTL 782
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
++++ G RD S+I TPP R P++T++ ++ V AI+ E+ RGGQVFY+ R+ +
Sbjct: 783 HMSMVGVRDLSVIETPPANRFPVQTYVMEYNGALVREAIEREMARGGQVFYLHNRVDDMA 842
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
++ +Q P + AHG+ R+LE + F +G +L+ T I+E+G+DI NANT+
Sbjct: 843 REVEKIQALVPEARVGHAHGKMTERELESMVYGFLEGEYDVLVTTTIIETGVDIPNANTL 902
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
IV + GL+QLYQLRGRVGR+++ A+AY Y +L++ + +RL A++E ELG GF
Sbjct: 903 IVNNADHMGLSQLYQLRGRVGRSNRVAYAYFMYKIDKVLTEVSEQRLQAIKEFTELGSGF 962
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 686
++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + V K + +I
Sbjct: 963 KIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLEEAVKERQAESKGEVVVKEIDPEI 1022
Query: 687 NI--NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
+ + +P EYI ++M + ++++ M + L ++G P E L++
Sbjct: 1023 VLPYDAYIPDEYIPDGYQKIQMYKRIKAIDGEEMYTEM--LDELHDRFGDMPSETERLMR 1080
Query: 745 KLYVRRMAADIGITKIYASGKMVGMK-----TNMNKKVFKMMIDSMTSEVHRN-SLTFEG 798
+R A +G+ I K+V ++ TN K++ DSM + R +EG
Sbjct: 1081 IALMRAYAIQVGVESIKEKNKIVRIQFSKEGTNQIDGA-KIVSDSM--QFGRAVGFLYEG 1137
Query: 799 DQIKAELLLELPREQLLNWI-FQCLAELYASLPALIK 834
+Q L L + ++ + F L +L SLP +K
Sbjct: 1138 NQ----LALTVDERKITGLLPFDLLEKLMKSLPDALK 1170
>gi|340357162|ref|ZP_08679787.1| transcription-repair coupling factor [Sporosarcina newyorkensis 2681]
gi|339618571|gb|EGQ23167.1| transcription-repair coupling factor [Sporosarcina newyorkensis 2681]
Length = 1177
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 251/613 (40%), Positives = 378/613 (61%), Gaps = 25/613 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEY-ADGMAKLPV 201
++ YS ++ GDY+VH GIGK+ G+ +QKD Y+ I Y +D +P
Sbjct: 491 RIKSYSEIKPGDYIVHVHHGIGKYYGVVTLEVGGLQKD------YLDIRYRSDDKLFVPA 544
Query: 202 KQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQK 261
Q ++ +Y E K P+ L KL W + K K AIQ + DL++LY R +K
Sbjct: 545 DQID-LIQKYVASGE-KEPK-LHKLGGA-EWTKTKRKVTAAIQDIADDLIKLYAKREAEK 600
Query: 262 RPPYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320
+ ++ + F FPYE T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA
Sbjct: 601 GFAFSEDDDLQRSFENAFPYEETQDQLQSIEEIKKDM-ERERPMDRLLCGDVGYGKTEVA 659
Query: 321 LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380
+RA F V+ GKQ L PT +LA+QHF+ + ERF+ YP + V +L+RF++K +++E +
Sbjct: 660 IRAAFKAVTNGKQVAFLVPTTILAQQHFETMKERFADYP-VTVSVLNRFRTKKQQDETIK 718
Query: 381 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSAT 440
+K G ++I+VGTH LL VVY +LGLLVVDEEQRFGV KEK+ K +VDVLTL+AT
Sbjct: 719 GLKAGTVDIVVGTHRLLSKDVVYQDLGLLVVDEEQRFGVTHKEKLKQLKTNVDVLTLTAT 778
Query: 441 PIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLP 500
PIPRTL++++ G RD S+I TPP R P++T++ + V AI+ E+ RGGQVFY+
Sbjct: 779 PIPRTLHMSMVGVRDLSVIETPPSNRFPVQTYVMEHNAGLVREAIEREMGRGGQVFYLYN 838
Query: 501 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
R++ ++ ++ ++Q P IA AHG+ LE + F +G +L+ T I+E+G+DI
Sbjct: 839 RVEEMDRKVEEIRQLVPEARIASAHGRMGEAALEAVIMSFLEGEYDVLVTTTIIETGIDI 898
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
N NT+IV D + GL+QLYQLRGRVGR+++ A++Y+ Y +L++ A RL A++E
Sbjct: 899 PNVNTLIVHDADRMGLSQLYQLRGRVGRSNRVAYSYMLYQRDKVLTEVAENRLQAIKEFT 958
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYK 680
ELG GF++A +D+ IRG G + G QQ G + +VG DL+ ++L E++ + + ++ +
Sbjct: 959 ELGSGFKIAMRDLSIRGAGNLLGSQQHGFIDSVGFDLYSQLLQEAIEE-RQTGIVKEEKQ 1017
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+I + IN LP YI ++M KA E + L E + R +G P +
Sbjct: 1018 DVEISLPINAYLPETYIQDGYQKIQMYKRV-KAIESNEDYLELVDEMIDR-FGDMPLEAD 1075
Query: 741 ILLKKLYVRRMAA 753
+LL+ V RM A
Sbjct: 1076 LLLR---VGRMKA 1085
>gi|336112720|ref|YP_004567487.1| transcription-repair coupling factor [Bacillus coagulans 2-6]
gi|335366150|gb|AEH52101.1| transcription-repair coupling factor [Bacillus coagulans 2-6]
Length = 1178
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 255/681 (37%), Positives = 409/681 (60%), Gaps = 20/681 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L GDYVVH GIGK++GI + + V +Y+ I+Y G KL PV Q
Sbjct: 490 RIKNYSELNVGDYVVHVNHGIGKYLGIV--TLEINGVHKDYLHIKY-QGSDKLYVPVDQI 546
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
L + + +E K P+ L KL + W+R K K + +IQ + DL++LY R +
Sbjct: 547 D--LVQKYVGSEGKEPK-LYKLG-GSEWKRVKRKVQSSIQDIADDLVKLYAEREASRGFA 602
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P EF A FPY+ T DQ ++ +++RD+ E+E PMDRL+CGDVG+GKTEVA+RA
Sbjct: 603 FSPDGDMQREFEAAFPYKETEDQLRSIQEIKRDM-EKEKPMDRLLCGDVGYGKTEVAIRA 661
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ +L PT +LA+QHF+ V+ERF YP IKVGLLSRF+++ E+ E + ++
Sbjct: 662 AFKAVMDGKQVAMLVPTTILAQQHFETVTERFHGYP-IKVGLLSRFRTRKEQNETIKGLR 720
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G +++++GTH LL + + +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 721 NGTIDMVIGTHRLLSKDIQFRDLGLLIIDEEQRFGVSHKEKIKKLKTNVDVLTLTATPIP 780
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + V AI+ EL R GQV+++ RI+
Sbjct: 781 RTLHMSMVGVRDLSVIETPPENRFPVQTYVLEYNDQMVREAIERELARDGQVYFLYNRIE 840
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E + + + P +A AHG+ QLE + F +G +L+ T I+E+G+DI N
Sbjct: 841 DIERKAEEIARLVPDARVAYAHGRMTESQLETVILGFLEGEYDVLVTTTIIETGVDIPNV 900
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ + +RL A++E ELG
Sbjct: 901 NTLIVNDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLAEASEKRLQAIKEFTELG 960
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ +
Sbjct: 961 SGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEARKGTDGEEEKLPPFE 1020
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+++ I+ +P YI +EM + + + + E + ++G+ P + L
Sbjct: 1021 VELEIDAYIPDAYIKDGYQKIEMYKRFRGI--ETLEDVEELKEEMIDRFGEYPQQVSDLF 1078
Query: 744 KKLYVRRMAADIGITKIYASGKMVG--MKTNMNKKVFKMMIDSMTSEVHRNS-LTFEGDQ 800
++ A + ++ I + +++ M +K+V + + + R++ EG+Q
Sbjct: 1079 TIAEMKVYAKEAMLSSIKQNKQLITILMSEKGSKQVNGPKVVDIVRKYGRSAGFGMEGNQ 1138
Query: 801 IKAELLLELPREQLLNWIFQC 821
+K + L++ + + W++ C
Sbjct: 1139 LK--ITLDIKKSKGHEWLYTC 1157
>gi|408410493|ref|ZP_11181704.1| Transcription-repair coupling factor [Lactobacillus sp. 66c]
gi|408410714|ref|ZP_11181916.1| Transcription-repair coupling factor [Lactobacillus sp. 66c]
gi|407875115|emb|CCK83722.1| Transcription-repair coupling factor [Lactobacillus sp. 66c]
gi|407875336|emb|CCK83510.1| Transcription-repair coupling factor [Lactobacillus sp. 66c]
Length = 1157
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 242/593 (40%), Positives = 368/593 (62%), Gaps = 16/593 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GD+VVH GIG+F GIK ++ V +Y+ I Y G +P Q S ++ +Y
Sbjct: 484 LKPGDFVVHVNHGIGRFEGIK--TLENDGVKRDYITITYQKGDQLFVPADQLS-LVQKY- 539
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K P ++KL + W + K K + ++ + DL++LY R +K + P P
Sbjct: 540 VASEGKTPH-INKLG-GSEWAKTKRKVQARVEDIADDLIDLYSKRESEKGYAFSPDGPDQ 597
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
A F A FPYEPT DQ +A +++ D+ E+ PMDRL+ GDVGFGKTEVA+RA F + G
Sbjct: 598 AAFEAAFPYEPTADQLRASAEIKADM-EKPKPMDRLLVGDVGFGKTEVAMRAAFKAICDG 656
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH+ + +RF +P ++V +LSRFQ+K+E +E + +K G ++++V
Sbjct: 657 KQVAFLVPTTILAQQHYQTIKDRFRDFP-VEVAVLSRFQTKSESKEITEGLKDGSIDLVV 715
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLL++DEEQRFGVK KEK+ K ++DVLTL+ATPIPRTL++++
Sbjct: 716 GTHRLLSKDVKFKDLGLLIIDEEQRFGVKHKEKLKQLKTNIDVLTLTATPIPRTLHMSMI 775
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ TPP R PI+T++ V A + E+ RGGQVFY+ R+ +EE +
Sbjct: 776 GIRDLSVMETPPKNRYPIQTYVLEQLPATVKEACQREMQRGGQVFYLHNRVGDIEETVGR 835
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L+Q P IA AHGQ QLE+ + +F G IL+ T I+E+G+D+ N NT+IV+D
Sbjct: 836 LEQLLPNARIAFAHGQMGEGQLEDILARFLAGDYDILVTTTIIETGIDMPNVNTLIVEDA 895
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+ + ELG GF++A +
Sbjct: 896 DHYGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMR 955
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + +VG DL+ +ML +++ K +V + ++D+ +
Sbjct: 956 DLSIRGAGNMLGAQQHGFIDSVGYDLYSQMLADAIKK--RQGKKTVVKSNAEVDLGLEAY 1013
Query: 692 LPSEYINHLENPMEMVNEAEKA-AEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+P YI E +E + + +EQD L + L ++G P ++E LL
Sbjct: 1014 IPDSYIADQEQKIEFYKKIKAINSEQD---LEDVEDELLDRFGDYPEAVENLL 1063
>gi|422417701|ref|ZP_16494656.1| transcription-repair coupling factor, partial [Listeria seeligeri
FSL N1-067]
gi|313635134|gb|EFS01462.1| transcription-repair coupling factor [Listeria seeligeri FSL
N1-067]
Length = 746
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 270/695 (38%), Positives = 405/695 (58%), Gaps = 41/695 (5%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L+ GDYVVH GI ++VG++ D+ + V +Y+ + Y G KL PV Q
Sbjct: 62 RIQSYSELKVGDYVVHINHGIARYVGMETLDI---NGVHKDYLLLVY-QGEDKLFIPVDQ 117
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L + + E K PR L+KL W+R K K + ++Q + DL++LY R +K
Sbjct: 118 LD--LVQKYVGAEGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 173
Query: 264 PY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ P EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALR
Sbjct: 174 AFSPDEEMQREFEDAFPYQETDDQLRSIAEIKKDM-ERPRPMDRLLVGDVGYGKTEVALR 232
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +
Sbjct: 233 AAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGM 291
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K G ++I+VGTH LL V Y++LGLL+VDEEQRFGV KEKI + +DVLTL+ATPI
Sbjct: 292 KSGTVDIVVGTHRLLSKDVEYHDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPI 351
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R+
Sbjct: 352 PRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRV 411
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + D + P +AIAHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 412 ETITQKADEISAMVPDARVAIAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPN 471
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+ VQD + GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E EL
Sbjct: 472 VNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTEL 531
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ K E VP
Sbjct: 532 GSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP-- 589
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTE---SLRRQYGKEPY 737
V+IDI + +P YI +EM ++I L F E + ++G+ P
Sbjct: 590 -VEIDIQADAYIPEYYITDGRQKIEMYKRF-----RNIEGLNDFEELQSDMIDRFGEYPE 643
Query: 738 SMEILLKKLYVRRMAADIGITKIYASGKMVGM------KTNMNKKVFKMMIDSMTSEVHR 791
+E L ++ A ++GI + + M ++ V +I V
Sbjct: 644 EVEYLFTMTELKVHALEVGIESVKQEQNKITMLFSESGTASIRGDVVMQIIGEFGRMV-- 701
Query: 792 NSLTFEGDQIKAELLLELPREQLLNWIFQC--LAE 824
+ EG Q+K + + + + L W++Q LAE
Sbjct: 702 -GVGMEGTQLK--ITINVQNKPLKEWLYQVKSLAE 733
>gi|311740779|ref|ZP_07714606.1| transcription-repair coupling factor [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311304299|gb|EFQ80375.1| transcription-repair coupling factor [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 1213
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 249/633 (39%), Positives = 375/633 (59%), Gaps = 20/633 (3%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQK-DSTVPIEYVFIEYADGMAKLPVKQAS 205
KVDP +L+ GD+VVH+ GIGKF+ + + +Q D T EY+ +EYA P Q
Sbjct: 502 KVDPLALKQGDFVVHETHGIGKFLKMAERTIQSGDETSRREYIVLEYAPSKRGQPADQLW 561
Query: 206 RMLYRYNLPNETKRPRT--LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
+ +L ++ + LSK+ + W+ K K + A++++ +L+ELY R Q P
Sbjct: 562 VPMDSLDLLSKYTGGESPHLSKMGGSD-WKNTKKKARAAVREIAGELVELYAKR--QAAP 618
Query: 264 PY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320
+ P NP AE FP+ T DQ A V+ D+ E PMDR++ GDVG+GKTEVA
Sbjct: 619 GHQFSPDNPWQAEMEDNFPFVETEDQMLAIDAVKHDM-ESTVPMDRVVVGDVGYGKTEVA 677
Query: 321 LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380
+RA F V G Q VL PT +LA+QHFD SER + +P +K+ +LSRF SK E ++
Sbjct: 678 IRAAFKAVQDGMQVAVLVPTTLLAQQHFDTFSERMTGFP-VKIEVLSRFTSKKEAKDIFK 736
Query: 381 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSAT 440
+ G ++I+VGTH LL + V + NLGL+VVDEEQRFGV+ KE I + K SVDVLT+SAT
Sbjct: 737 GLADGSVDIVVGTHRLLQTGVHWKNLGLIVVDEEQRFGVEHKEHIKALKASVDVLTMSAT 796
Query: 441 PIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLP 500
PIPRTL +++ G R+ S I TPP +R P+ T++ A+ ++V +AI+ EL R GQ F++
Sbjct: 797 PIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYEDKQVAAAIRRELLRDGQTFFIHN 856
Query: 501 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
++ +E+ L+ P + +AHGQ LE+T++ F +L+CT IVE+GLDI
Sbjct: 857 KVSDIEKKARELRDLVPEARVVVAHGQMNEEVLEQTVQGFWDREYDVLVCTTIVETGLDI 916
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP + L++ + +RLA + +
Sbjct: 917 ANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNN 976
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML------FESLSKVDEHCV 674
+LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ F+SL++ + V
Sbjct: 977 DLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVETFKSLARGEAPTV 1036
Query: 675 ISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGK 734
K ++ID+ ++ +P YI+ +E+ + AA QD L E + ++G
Sbjct: 1037 TDEGPKEIRIDLPVDAHIPESYIDSERLRLEVYRKL--AASQDNDDLKAVIEEMEDRFGP 1094
Query: 735 EPYSMEILLKKLYVRRMAADIGITKIYASGKMV 767
P + LL +R A GI+ I G +
Sbjct: 1095 LPQEVLRLLSVARLRHQARRAGISDITVQGTRI 1127
>gi|424866640|ref|ZP_18290472.1| Transcription-repair coupling factor [Leptospirillum sp. Group II
'C75']
gi|124516600|gb|EAY58108.1| transcription-repair coupling factor [Leptospirillum rubarum]
gi|387222729|gb|EIJ77148.1| Transcription-repair coupling factor [Leptospirillum sp. Group II
'C75']
Length = 1153
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 247/556 (44%), Positives = 349/556 (62%), Gaps = 12/556 (2%)
Query: 147 YKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
Y+ D L G+ VVH + GIG + G+K ++ S +P E+ +EY D KL PV QA
Sbjct: 473 YRKDRPPLNEGEPVVHLQHGIGLYRGLK-EIMVGS-IPGEFFVVEYRD-FEKLYVPVDQA 529
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+L Y P E P TL ++ T W R + K + I+K+ DL++LY R
Sbjct: 530 D-LLQPYRGP-EGSAP-TLDRIGGQT-WNRTRQKVRKEIEKISQDLVDLYARRKTVSGHS 585
Query: 265 YPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ + + EF FPY+ TPDQ+ A+ V D+ E TPMDRLI GDVGFGKTE+A+RA
Sbjct: 586 FSADLLLVREFENSFPYDLTPDQEDAWRAVSEDM-EAPTPMDRLILGDVGFGKTEIAMRA 644
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V+ G Q +L PT +LAKQH++ +RFS +P +++G +SR S+AE +
Sbjct: 645 AFKAVADGYQVALLVPTTLLAKQHYESFLDRFSGFP-VRIGHISRMVSQAEIRATRKKLS 703
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GT +L+ + NLGLL++DEEQRFGV QKEK+ S SVDVLTLSATPIP
Sbjct: 704 LGEIDILIGTTALISKETTFRNLGLLIIDEEQRFGVGQKEKLKSRYTSVDVLTLSATPIP 763
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL ++L+G R S I TPPP R PI+T + F + ++ AI EL R GQVF++ R++
Sbjct: 764 RTLQMSLSGLRGISFIMTPPPGRKPIRTAILTFDRHRIHEAIDRELARDGQVFFIHNRVQ 823
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ + +L + FPGV I +AHGQ ++EE MEKF Q +IL+ T IVESGLDI A
Sbjct: 824 TISRMVHYLAKLFPGVPIGMAHGQMEDSRMEEVMEKFIQRHYRILVSTAIVESGLDIPAA 883
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTIIV FG+++LYQ+RGRVGR+ ++A+AY P +S L+D A +RL L++ LG
Sbjct: 884 NTIIVNRADMFGISELYQIRGRVGRSGQQAYAYFLIPSESGLTDTARKRLKTLQDNTSLG 943
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+Q+A +DM IRG G++ G QQTG + VG+DL+ EM+ E++ E + + + V+
Sbjct: 944 SGYQIAMRDMEIRGAGSLLGHQQTGHIALVGLDLYLEMVEEAIQSRIEPEAVPLAREEVR 1003
Query: 684 IDININPRLPSEYINH 699
ID+ R P +YI H
Sbjct: 1004 IDLGRESRFPEDYIEH 1019
>gi|418632986|ref|ZP_13195404.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU129]
gi|374840049|gb|EHS03553.1| transcription-repair coupling factor [Staphylococcus epidermidis
VCU129]
Length = 1166
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 244/628 (38%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 486 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 538
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 539 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 594
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ E+ PMDRL+CGDVG+GKTEV
Sbjct: 595 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-EKARPMDRLLCGDVGYGKTEV 653
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 654 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 712
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ ++ G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 713 EGLESGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 772
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 773 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 832
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 833 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 892
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 893 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 952
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 953 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1012
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1013 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1070
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1071 ERLLDIVEIKVHALHAGVELIKDKGKSI 1098
>gi|126701125|ref|YP_001090022.1| transcription-repair coupling factor (TRCF ATP-dependent helicase
mfd) [Clostridium difficile 630]
gi|255102711|ref|ZP_05331688.1| transcription-repair coupling factor [Clostridium difficile
QCD-63q42]
gi|255308532|ref|ZP_05352703.1| transcription-repair coupling factor [Clostridium difficile ATCC
43255]
gi|423080831|ref|ZP_17069448.1| transcription-repair coupling factor [Clostridium difficile
002-P50-2011]
gi|423087232|ref|ZP_17075621.1| transcription-repair coupling factor [Clostridium difficile
050-P50-2011]
gi|423090601|ref|ZP_17078890.1| transcription-repair coupling factor [Clostridium difficile
70-100-2010]
gi|115252562|emb|CAJ70405.1| Transcription-repair coupling factor (TRCF ATP-dependent helicase
mfd) [Clostridium difficile 630]
gi|357545170|gb|EHJ27150.1| transcription-repair coupling factor [Clostridium difficile
050-P50-2011]
gi|357552320|gb|EHJ34094.1| transcription-repair coupling factor [Clostridium difficile
002-P50-2011]
gi|357556305|gb|EHJ37920.1| transcription-repair coupling factor [Clostridium difficile
70-100-2010]
Length = 1128
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 249/611 (40%), Positives = 378/611 (61%), Gaps = 18/611 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L GDYVVH+ G+G++ GI + V + + +Y+ I Y G +P+ Q + + +Y
Sbjct: 492 LSVGDYVVHENSGVGRYTGIEQITV---NAIKKDYMKIVYQGGDNLYVPIDQMDK-VQKY 547
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 270
+ E ++ + L+KL T W + K K K I+ M DL+ELY R K + + K+ P
Sbjct: 548 -IGAEVEKVK-LNKLG-TNEWTKAKAKVKKEIEDMTKDLIELYAKREKIQGYKFSKDTPW 604
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
AEF + FPY+ T DQ KA + ++D+ E MDRL+CGDVG+GKTEVA+R+IF
Sbjct: 605 QAEFESLFPYQETEDQLKAIEETKKDM-ESSKVMDRLVCGDVGYGKTEVAIRSIFKACMD 663
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
KQ VL PT +LA+QH++ ERF YP ++V +LSRF++ ++++ ++ K G ++I+
Sbjct: 664 QKQVAVLVPTTILAQQHYNTFKERFENYP-LRVEVLSRFKTPKQQKQIIEDAKKGLVDIL 722
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH ++ + NLGL+V+DEEQRFGVK KE + K +VDVLTLSATPIPRTL+++L
Sbjct: 723 IGTHRIISKDINLPNLGLVVIDEEQRFGVKHKEALKKIKSTVDVLTLSATPIPRTLHMSL 782
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVI-SAIKYELDRGGQVFYVLPRIKGLEEPM 509
+G RD S+I PP ER P+ T+++ SKE VI I+ EL RGGQVF+V R++ +EE
Sbjct: 783 SGIRDMSVIEEPPQERHPVITYVTE-SKESVIQDEIERELSRGGQVFFVYNRVEHIEEMA 841
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+Q+ P +A+AHG+ S+ LE + F +L+CT I+E+G+DI NANT+I+
Sbjct: 842 SMIQKLVPDARVAVAHGRMTSKSLENIILGFLNKDYDVLVCTTIIETGMDISNANTMIIY 901
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GLAQLYQLRGRVGR+ ++ +AYL Y LS+ A +RL A+ E E G GF++A
Sbjct: 902 DADKMGLAQLYQLRGRVGRSSRQGYAYLLYEKDKTLSEIAEKRLKAIREFTEFGSGFKIA 961
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G I G QQ G + +G DL+ +ML +++ KV + V V+ID+++N
Sbjct: 962 MRDLEIRGAGNILGSQQHGHMAVIGYDLYVKMLNDAIKKVKGEPI--VEEIDVEIDLSVN 1019
Query: 690 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+P YI +EM + A+ ++ ++ E L ++ P ++ LL Y++
Sbjct: 1020 AYIPDNYIKDELIKIEMYKKI--ASIENKEDMLDIQEELEDRFSDIPKPVQTLLTIAYIK 1077
Query: 750 RMAADIGITKI 760
+ + I KI
Sbjct: 1078 SLCKILKIEKI 1088
>gi|410479942|ref|YP_006767579.1| transcription-repair coupling factor [Leptospirillum ferriphilum
ML-04]
gi|406775194|gb|AFS54619.1| transcription-repair coupling factor [Leptospirillum ferriphilum
ML-04]
Length = 1153
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 247/556 (44%), Positives = 349/556 (62%), Gaps = 12/556 (2%)
Query: 147 YKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
Y+ D L G+ VVH + GIG + G+K ++ S +P E+ +EY D KL PV QA
Sbjct: 473 YRKDRPPLNEGEPVVHLQHGIGLYRGLK-EIMVGS-IPGEFFVVEYRD-FEKLYVPVDQA 529
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+L Y P E P TL ++ T W R + K + I+K+ DL++LY R
Sbjct: 530 D-LLQPYRGP-EGSAP-TLDRIGGQT-WNRTRQKVRKEIEKISQDLVDLYARRKTVSGHS 585
Query: 265 YPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ + + EF FPY+ TPDQ+ A+ V D+ E TPMDRLI GDVGFGKTE+A+RA
Sbjct: 586 FSADLLLVREFENSFPYDLTPDQEDAWRAVSEDM-EAPTPMDRLILGDVGFGKTEIAMRA 644
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V+ G Q +L PT +LAKQH++ +RFS +P +++G +SR S+AE +
Sbjct: 645 AFKAVADGYQVALLVPTTLLAKQHYESFLDRFSGFP-VRIGHISRMVSQAEIRATRRKLS 703
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GT +L+ + NLGLL++DEEQRFGV QKEK+ S SVDVLTLSATPIP
Sbjct: 704 LGEIDILIGTTALISKETTFRNLGLLIIDEEQRFGVGQKEKLKSRYTSVDVLTLSATPIP 763
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL ++L+G R S I TPPP R PI+T + F + ++ AI EL R GQVF++ R++
Sbjct: 764 RTLQMSLSGLRGISFIMTPPPGRKPIRTAILTFDRHRIHEAIDRELARDGQVFFIHNRVQ 823
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ + +L + FPGV I +AHGQ ++EE MEKF Q +IL+ T IVESGLDI A
Sbjct: 824 TISRMVHYLAKLFPGVPIGMAHGQMEDSRMEEVMEKFIQRHYRILVSTAIVESGLDIPAA 883
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTIIV FG+++LYQ+RGRVGR+ ++A+AY P +S L+D A +RL L++ LG
Sbjct: 884 NTIIVNRADMFGISELYQIRGRVGRSGQQAYAYFLIPSESGLTDTARKRLKTLQDNTSLG 943
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+Q+A +DM IRG G++ G QQTG + VG+DL+ EM+ E++ E + + + V+
Sbjct: 944 SGYQIAMRDMEIRGAGSLLGHQQTGHIALVGLDLYLEMVEEAIQSRIEPEAVPLAREEVR 1003
Query: 684 IDININPRLPSEYINH 699
ID+ R P +YI H
Sbjct: 1004 IDLGRESRFPEDYIEH 1019
>gi|420191279|ref|ZP_14697211.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM037]
gi|420204996|ref|ZP_14710533.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM015]
gi|420236074|ref|ZP_14740604.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH051475]
gi|394257803|gb|EJE02711.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM037]
gi|394271575|gb|EJE16067.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIHLM015]
gi|394301429|gb|EJE44886.1| transcription-repair coupling factor [Staphylococcus epidermidis
NIH051475]
Length = 1169
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 244/628 (38%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ E+ PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-EKARPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ ++ G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLESGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGVELIKDKGKSI 1101
>gi|254977126|ref|ZP_05273598.1| transcription-repair coupling factor [Clostridium difficile
QCD-66c26]
gi|255094455|ref|ZP_05323933.1| transcription-repair coupling factor [Clostridium difficile CIP
107932]
gi|255316206|ref|ZP_05357789.1| transcription-repair coupling factor [Clostridium difficile
QCD-76w55]
gi|255518868|ref|ZP_05386544.1| transcription-repair coupling factor [Clostridium difficile
QCD-97b34]
gi|255652047|ref|ZP_05398949.1| transcription-repair coupling factor [Clostridium difficile
QCD-37x79]
gi|260685021|ref|YP_003216306.1| transcription-repair coupling factor [Clostridium difficile CD196]
gi|260688679|ref|YP_003219813.1| transcription-repair coupling factor [Clostridium difficile R20291]
gi|384362695|ref|YP_006200547.1| transcription-repair coupling factor [Clostridium difficile BI1]
gi|260211184|emb|CBA66656.1| transcription-repair coupling factor [Clostridium difficile CD196]
gi|260214696|emb|CBE07346.1| transcription-repair coupling factor [Clostridium difficile R20291]
Length = 1128
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 249/611 (40%), Positives = 378/611 (61%), Gaps = 18/611 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L GDYVVH+ G+G++ GI + V + + +Y+ I Y G +P+ Q + + +Y
Sbjct: 492 LSVGDYVVHENSGVGRYTGIEQITV---NAIKKDYMKIVYQGGDNLYVPIDQMDK-VQKY 547
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 270
+ E ++ + L+KL T W + K K K I+ M DL+ELY R K + + K+ P
Sbjct: 548 -IGAEVEKVK-LNKLG-TNEWTKAKAKVKKEIEDMTKDLIELYAKREKIQGYKFSKDTPW 604
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
AEF + FPY+ T DQ KA + ++D+ E MDRL+CGDVG+GKTEVA+R+IF
Sbjct: 605 QAEFESLFPYQETEDQLKAIEETKKDM-ESSKVMDRLVCGDVGYGKTEVAIRSIFKACMD 663
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
KQ VL PT +LA+QH++ ERF YP ++V +LSRF++ ++++ ++ K G ++I+
Sbjct: 664 QKQVAVLVPTTILAQQHYNTFKERFENYP-LRVEVLSRFKTPKQQKQIIEDAKKGLVDIL 722
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH ++ + NLGL+V+DEEQRFGVK KE + K +VDVLTLSATPIPRTL+++L
Sbjct: 723 IGTHRIISKDINLPNLGLVVIDEEQRFGVKHKEALKKIKSTVDVLTLSATPIPRTLHMSL 782
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVI-SAIKYELDRGGQVFYVLPRIKGLEEPM 509
+G RD S+I PP ER P+ T+++ SKE VI I+ EL RGGQVF+V R++ +EE
Sbjct: 783 SGIRDMSVIEEPPQERHPVITYVTE-SKESVIQDEIERELSRGGQVFFVYNRVEHIEEMA 841
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+Q+ P +A+AHG+ S+ LE + F +L+CT I+E+G+DI NANT+I+
Sbjct: 842 SMIQKLVPDARVAVAHGRMTSKSLENIILGFLNKDYDVLVCTTIIETGMDISNANTMIIY 901
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GLAQLYQLRGRVGR+ ++ +AYL Y LS+ A +RL A+ E E G GF++A
Sbjct: 902 DADKMGLAQLYQLRGRVGRSSRQGYAYLLYEKDKTLSEIAEKRLKAIREFTEFGSGFKIA 961
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G I G QQ G + +G DL+ +ML +++ KV + V V+ID+++N
Sbjct: 962 MRDLEIRGAGNILGSQQHGHMAVIGYDLYVKMLNDAIKKVKGEPI--VEEIDVEIDLSVN 1019
Query: 690 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+P YI +EM + A+ ++ ++ E L ++ P ++ LL Y++
Sbjct: 1020 AYIPDNYIKDELIKIEMYKKI--ASIENKEDMLDIQEELEDRFSDIPKPVQTLLTIAYIK 1077
Query: 750 RMAADIGITKI 760
+ + I KI
Sbjct: 1078 SLCKILKIEKI 1088
>gi|409351253|ref|ZP_11234046.1| Transcription-repair coupling factor [Lactobacillus equicursoris CIP
110162]
gi|407876865|emb|CCK86104.1| Transcription-repair coupling factor [Lactobacillus equicursoris CIP
110162]
Length = 1157
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 242/593 (40%), Positives = 368/593 (62%), Gaps = 16/593 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GD+VVH GIG+F GIK ++ V +Y+ I Y G +P Q S ++ +Y
Sbjct: 484 LKPGDFVVHVNHGIGRFEGIK--TLENDGVKRDYITITYQKGDQLFVPADQLS-LVQKY- 539
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K P ++KL + W + K K + ++ + DL++LY R +K + P P
Sbjct: 540 VASEGKTPH-INKLG-GSEWAKTKRKVQARVEDIADDLIDLYSKRESEKGYAFSPDGPDQ 597
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
A F A FPYEPT DQ +A +++ D+ E+ PMDRL+ GDVGFGKTEVA+RA F + G
Sbjct: 598 AAFEAAFPYEPTADQLRASAEIKADM-EKPKPMDRLLVGDVGFGKTEVAMRAAFKAICDG 656
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH+ + +RF +P ++V +LSRFQ+K+E +E + +K G ++++V
Sbjct: 657 KQVAFLVPTTILAQQHYQTIKDRFRDFP-VEVAVLSRFQTKSESKEITEGLKDGSIDLVV 715
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLL++DEEQRFGVK KEK+ K ++DVLTL+ATPIPRTL++++
Sbjct: 716 GTHRLLSKDVKFKDLGLLIIDEEQRFGVKHKEKLKQLKTNIDVLTLTATPIPRTLHMSMI 775
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ TPP R PI+T++ V A + E+ RGGQVFY+ R+ +EE +
Sbjct: 776 GIRDLSVMETPPKNRYPIQTYVLEQLPATVKEACQREMQRGGQVFYLHNRVGDIEETVGR 835
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L+Q P IA AHGQ QLE+ + +F G IL+ T I+E+G+D+ N NT+IV+D
Sbjct: 836 LEQLLPNARIAFAHGQMGEGQLEDILARFLAGDYDILVTTTIIETGIDMPNVNTLIVEDA 895
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+ + ELG GF++A +
Sbjct: 896 DHYGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMR 955
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + +VG DL+ +ML +++ K +V + ++D+ +
Sbjct: 956 DLSIRGAGNMLGAQQHGFIDSVGYDLYSQMLADAIKK--RQGKKTVVKSNAEVDLGLEAY 1013
Query: 692 LPSEYINHLENPMEMVNEAEKA-AEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+P YI E +E + + +EQD L + L ++G P ++E LL
Sbjct: 1014 IPDSYIADQEQKIEFYKKIKAINSEQD---LEDVEDELLDRFGDYPEAVENLL 1063
>gi|345867410|ref|ZP_08819421.1| transcription-repair coupling factor [Bizionia argentinensis JUB59]
gi|344048078|gb|EGV43691.1| transcription-repair coupling factor [Bizionia argentinensis JUB59]
Length = 1118
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 243/631 (38%), Positives = 379/631 (60%), Gaps = 28/631 (4%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
+L GDYV H GIGKF G+ K DV+ I+ ++ E + L + ++ ++
Sbjct: 434 NLDIGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLIYGER--DILYLSIHSLHKIT-KF 490
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPA 270
N + +P + KL + AW+ K K K ++++ +L+++Y R L++ +P +
Sbjct: 491 N--GKDGKPPKVYKLG-SKAWKTLKAKTKSRVKEIAFNLIQVYAKRKLERGYQYHPDSHM 547
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E A F YE TPDQ A DV+ D+ E E PMDRL+CGDVGFGKTEVA+RA F V
Sbjct: 548 QHELEASFIYEDTPDQSTATADVKADM-ESERPMDRLVCGDVGFGKTEVAIRAAFKAVDN 606
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ +L PT +LA QH ER ++P + V L+RF++ EK E L ++ G ++II
Sbjct: 607 GKQVAILVPTTILAYQHSRTFRERLKEFP-VTVDYLNRFRTAKEKRETLANLEAGSVDII 665
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ V + +LGLL+VDEEQ+FGV KEK+ + K +VDVLTL+ATPIPRTL +L
Sbjct: 666 IGTHQLVNKNVKFKDLGLLIVDEEQKFGVAVKEKLKTLKDNVDVLTLTATPIPRTLQFSL 725
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S+I+TPPP R PI++H+ FS+E + A+ YE+ RGGQVF++ RI+ ++E
Sbjct: 726 MAARDLSVITTPPPNRYPIESHVVRFSEETIRDAVTYEIQRGGQVFFIHNRIENIKEVAG 785
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P I I HGQ ++LE+ M F G +L+ T IVESGLD+ NANTI + +
Sbjct: 786 LIQRLVPDAKIGIGHGQMEGKKLEQLMLAFINGEFDVLVSTTIVESGLDVPNANTIFINN 845
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A Y P+ S +++ A +R+ ALE+ ELG GF +A
Sbjct: 846 ANNFGLSDLHQMRGRVGRSNKKAFCYFITPEYSAMTEDARKRITALEQFSELGSGFNIAM 905
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV---------PYKS 681
KD+ IRG G + G +Q+G + ++G D + ++L E++ ++ + + K
Sbjct: 906 KDLEIRGAGDLLGGEQSGFINDIGFDTYQKILNEAIDELKQTEFADLYEDDGKEKEYVKD 965
Query: 682 VQIDININPRLPSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+ ID + P +Y+N++ + + +NE + AE L++ +R ++G+ P
Sbjct: 966 ITIDSDFELLFPDDYVNNIAERLNLYTKLNEVKTEAE-----LVKLESEIRDRFGEFPTQ 1020
Query: 739 MEILLKKLYVRRMAADIGITKIYA-SGKMVG 768
+ LL + ++ +A +G+ K+ GK++G
Sbjct: 1021 VVDLLNSVRIKWVATKMGLEKVVMKQGKLIG 1051
>gi|110803113|ref|YP_699740.1| transcription-repair coupling factor [Clostridium perfringens SM101]
gi|110683614|gb|ABG86984.1| transcription-repair coupling factor [Clostridium perfringens SM101]
Length = 1162
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 246/643 (38%), Positives = 397/643 (61%), Gaps = 20/643 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH GIG + GIK +VQ +Y+ IEY+ G +PV+Q ++ +Y
Sbjct: 495 LKPGDYVVHVNSGIGVYKGIKQIEVQGHKR---DYLDIEYSKGDKLYVPVEQLD-LVQKY 550
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +++ P+ +SKL W++ K K + +I + DL++LY R K + K+
Sbjct: 551 -IGSDSASPK-ISKLG-GNEWQKAKAKVRKSINDIAGDLVKLYAERSTVKGYKFSKDTQW 607
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FPYE TPDQ A D++ D+ E MDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QKQFEDEFPYEETPDQLAAIEDIKSDM-ESNKVMDRLLCGDVGYGKTEVAIRAAFKAVME 666
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH+ + RF+ +P I + ++SRF++K ++ E L +K G+++I+
Sbjct: 667 GKQVAFLVPTTILAEQHYKNMKRRFAGFP-ITIDMISRFRTKKQQTETLKALKEGNVDIL 725
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ + + +LGLL+VDEEQRFGV QKEKI SFK +VDVLTLSATPIPRTL+++L
Sbjct: 726 IGTHRLVSKDIQFKDLGLLIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSL 785
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG RD S+I TPP R PI+T++ + + + AI E++RGGQV++V R++ ++E +
Sbjct: 786 TGVRDISVIETPPENRYPIQTYVVEQNDQLIRDAILREINRGGQVYFVHNRVESIQEVAN 845
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
++Q+ P + HGQ RQLE M F + +L+CT+I+E+G+DI N NT+IV D
Sbjct: 846 YIQELVPECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVND 905
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR++K A+AY Y +L++ A +RL AL++ ELG GF++A
Sbjct: 906 ADKMGLSQLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAM 965
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G Q G + +G DL+ ML +++ K+ + + P ++ +D+ ++
Sbjct: 966 RDLEIRGAGNMMGSAQHGHMAAIGYDLYCRMLEDTI-KIVKGEIEREPVETT-VDLKVDA 1023
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+PS YI +E+ + ++ + ++ E L ++ P ++ L+ Y++
Sbjct: 1024 FIPSSYIKDEIQKIEVYKKIAAIENEEDYEYVR--EELEDRFSNIPNTVYNLMDIAYIKS 1081
Query: 751 MAADIGITKIYASGK----MVGMKTNMNKKVFKMMIDSMTSEV 789
A + I +I + + + +K++FK++++ ++
Sbjct: 1082 KAKLLNIEEIKEKNEDIIFIFESRERTDKRIFKILLEEYKDDI 1124
>gi|255657458|ref|ZP_05402867.1| transcription-repair coupling factor [Clostridium difficile
QCD-23m63]
gi|296449053|ref|ZP_06890843.1| transcription-repair coupling factor [Clostridium difficile NAP08]
gi|296879876|ref|ZP_06903849.1| transcription-repair coupling factor [Clostridium difficile NAP07]
gi|296262146|gb|EFH08951.1| transcription-repair coupling factor [Clostridium difficile NAP08]
gi|296429165|gb|EFH15039.1| transcription-repair coupling factor [Clostridium difficile NAP07]
Length = 1128
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 249/611 (40%), Positives = 378/611 (61%), Gaps = 18/611 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L GDYVVH+ G+G++ GI + V + + +Y+ I Y G +P+ Q + + +Y
Sbjct: 492 LSVGDYVVHENSGVGRYTGIEQITV---NAIKKDYMKIVYQGGDNLYVPIDQMDK-VQKY 547
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 270
+ E ++ + L+KL T W + K K K I+ M DL+ELY R K + + K+ P
Sbjct: 548 -IGAEVEKVK-LNKLG-TNEWTKAKAKVKKEIEDMTKDLIELYAKREKIQGYKFSKDTPW 604
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
AEF + FPY+ T DQ KA + ++D+ E MDRL+CGDVG+GKTEVA+R+IF
Sbjct: 605 QAEFESLFPYQETEDQLKAIEETKKDM-ESSKVMDRLVCGDVGYGKTEVAIRSIFKACMD 663
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
KQ VL PT +LA+QH++ ERF YP ++V +LSRF++ ++++ ++ K G ++I+
Sbjct: 664 QKQVAVLVPTTILAQQHYNTFKERFENYP-LRVEVLSRFKTPKQQKQIIEDAKKGLVDIL 722
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH ++ + NLGL+V+DEEQRFGVK KE + K +VDVLTLSATPIPRTL+++L
Sbjct: 723 IGTHRIISKDINLPNLGLVVIDEEQRFGVKHKEALKKIKSTVDVLTLSATPIPRTLHMSL 782
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVI-SAIKYELDRGGQVFYVLPRIKGLEEPM 509
+G RD S+I PP ER P+ T+++ SKE VI I+ EL RGGQVF+V R++ +EE
Sbjct: 783 SGIRDMSVIEEPPQERHPVITYVTE-SKESVIQDEIERELSRGGQVFFVYNRVEHIEEMA 841
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+Q+ P +A+AHG+ S+ LE + F +L+CT I+E+G+DI NANT+I+
Sbjct: 842 SMIQKLVPDARVAVAHGRMTSKSLENIILGFLNKDYDVLVCTTIIETGMDISNANTMIIY 901
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GLAQLYQLRGRVGR+ ++ +AYL Y LS+ A +RL A+ E E G GF++A
Sbjct: 902 DADKMGLAQLYQLRGRVGRSSRQGYAYLLYEKDKTLSEIAEKRLKAIREFTEFGSGFKIA 961
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G I G QQ G + +G DL+ +ML +++ KV + V V+ID+++N
Sbjct: 962 MRDLEIRGAGNILGSQQHGHMAVIGYDLYVKMLNDAIKKVKGEPI--VEEIDVEIDLSVN 1019
Query: 690 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+P YI +EM + A+ ++ ++ E L ++ P ++ LL Y++
Sbjct: 1020 AYIPDNYIKDELIKIEMYKKI--ASIENKEDMLDIQEELEDRFSDIPKPVQTLLTIAYIK 1077
Query: 750 RMAADIGITKI 760
+ + I KI
Sbjct: 1078 SLCKILKIEKI 1088
>gi|379020273|ref|YP_005296935.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M013]
gi|359829582|gb|AEV77560.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M013]
Length = 1168
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 244/629 (38%), Positives = 394/629 (62%), Gaps = 21/629 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VDEHCVISVPYK 680
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ + E VP
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEQES-EVP-- 1015
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V++D+N++ LP+EYI + + +E+ + K D ++ + L ++ P +
Sbjct: 1016 EVEVDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVA 1073
Query: 741 ILLKKLYVRRMAADIGITKIYASGKMVGM 769
LL + ++ A GIT I GK++ +
Sbjct: 1074 RLLDIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|419860490|ref|ZP_14383131.1| transcription-repair coupling factor [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|387982884|gb|EIK56383.1| transcription-repair coupling factor [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 1266
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 258/706 (36%), Positives = 411/706 (58%), Gaps = 41/706 (5%)
Query: 147 YKVDPYSLRSGDYVVHKKVGIGKFVGIKFDV--QKDSTVPIEYVFIEYADGMAKLPVKQ- 203
++VDP +L++GDYVVH+ GIG+F+ + V D T EY+ +EYA P Q
Sbjct: 512 HRVDPLALKTGDYVVHETHGIGRFLKMTERVIQSGDETSRREYIVLEYAASKRGQPADQL 571
Query: 204 -----ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRL 258
+ ML +Y ++P TLSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 572 YVPMDSLDMLSKYV---GGEKP-TLSKMGGSD-WKNTKRKARAAVREIAGELVELYAKR- 625
Query: 259 KQKRPPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFG 315
Q P + P +P E FPY T DQ A V+ D+ E+ +PMDR++ GDVG+G
Sbjct: 626 -QSAPGHAFAPDSPWQHEMEDNFPYVETEDQMLAIDAVKADM-EKPSPMDRVVVGDVGYG 683
Query: 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 375
KTEVA+RA F V G+Q +VL PT +LA+QH ER + +P + + LSRF S +E
Sbjct: 684 KTEVAVRAAFKAVQDGRQVVVLVPTTLLAQQHLSTFEERMAGFP-VTIKGLSRFTSPSES 742
Query: 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVL 435
+E L + G ++I++GTH LL + V + NLGL++VDEEQRFGV+ KE I + + VDVL
Sbjct: 743 KEILKGLADGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVL 802
Query: 436 TLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQV 495
T+SATPIPRTL +++ G R+ S I TPP +R PI T++ A ++V +AI+ EL R GQV
Sbjct: 803 TMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQVAAAIRRELLRDGQV 862
Query: 496 FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555
FYV ++ +E+ L++ P I +AHGQ LE+T++ F +L+CT IVE
Sbjct: 863 FYVHNKVSDIEKKARELRELVPEARIVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVE 922
Query: 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA 615
+GLDI NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP + L++ + +RLA
Sbjct: 923 TGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTENSYDRLAT 982
Query: 616 LEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDE 671
+ + +LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D
Sbjct: 983 IAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADG 1042
Query: 672 HCVISVPY--KSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESL 728
V + K ++ID+ ++ +P +YIN +E+ + A A ++D+ ++ E +
Sbjct: 1043 KVVDATEQGPKEIRIDLPVDAHIPEDYINSERLRLEVYRKLAASANDKDLALVV---EEM 1099
Query: 729 RRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMK----TNMNKKVFKMMIDS 784
+ ++G P+ ++ LL +R +A G++ I G + + T+ + K + S
Sbjct: 1100 KDRFGPVPHEVKRLLAVSRLRHLARATGLSDIGVQGTRIKLHPVELTDSKQVRLKRLAPS 1159
Query: 785 MTSEVHRNSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
T ++ EG ++ + L ++ +LL W+ +AE++
Sbjct: 1160 ATYRAAAKAIQLPFPKEGAKVTDKQLRDV---ELLQWVADFIAEMF 1202
>gi|319654942|ref|ZP_08009016.1| transcription-repair coupling factor [Bacillus sp. 2_A_57_CT2]
gi|317393367|gb|EFV74131.1| transcription-repair coupling factor [Bacillus sp. 2_A_57_CT2]
Length = 1179
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 235/564 (41%), Positives = 361/564 (64%), Gaps = 14/564 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + V +Y+ I Y G KL PV+Q
Sbjct: 492 RIKSYSELKVGDYVVHVNHGIGKYLGI--ETLEINGVHKDYLHIRY-QGSDKLYVPVEQI 548
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
L + + +E K P+ + KL W+R K K + ++Q + DL++LY R K
Sbjct: 549 E--LVQKYVGSEAKEPK-IYKLGGND-WKRVKKKVQSSVQDIADDLIKLYAEREASKGYA 604
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P EF A FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 605 FSPDGDMQREFEAAFPYQETEDQIRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 663
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ +L PT +LA+QH++ + ERF YP I++GLLSRF+SK ++ E L +K
Sbjct: 664 AFKAIADGKQVAILVPTTILAQQHYETMRERFQDYP-IEIGLLSRFRSKKQQTETLKGLK 722
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++++VGTH +L + Y LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 723 AGTIDVVVGTHRILSKDIQYRELGLLIIDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIP 782
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL R GQV+++ R++
Sbjct: 783 RTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGALVREAIERELARDGQVYFLYNRVE 842
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E + + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 843 DIERKAEEISMLVPDARVTYAHGKMTENELESVMLSFLEGESDVLVSTTIIETGVDIPNV 902
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 903 NTLIVHDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELG 962
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL-SKVDEHCVISVPYKSV 682
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML E++ + D+ + +
Sbjct: 963 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKEAIEERKDKLDGVEAKPAKI 1022
Query: 683 QIDININPRLPSEYINHLENPMEM 706
+ID++++ +P Y++ +EM
Sbjct: 1023 EIDLDVDAYIPDFYLSDGHQKIEM 1046
>gi|390933858|ref|YP_006391363.1| transcription-repair coupling factor [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389569359|gb|AFK85764.1| transcription-repair coupling factor [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 1166
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 253/648 (39%), Positives = 396/648 (61%), Gaps = 17/648 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L G YVVH GIGK+ GI+ + D V +Y+ I+YA D +PV+Q ++ +Y
Sbjct: 500 LTVGSYVVHVNYGIGKYEGIE-KITVDG-VTKDYLKIKYAGDDKLFVPVEQLD-LVQKYI 556
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAI 271
P + +P L+KL ++ W + K + K A++ + DL++LY R K + K+ P
Sbjct: 557 GPED--KPPKLNKLG-SSDWSKLKKRAKKAVEDIAKDLIKLYAKRQTMKGYAFSKDTPWQ 613
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F +FPYE T DQ + ++++D+ E + PMDRL+CGDVG+GKTEVALRA F V+ G
Sbjct: 614 KDFEERFPYEETEDQLRCIEEIKKDM-ESDKPMDRLLCGDVGYGKTEVALRAAFKAVADG 672
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ +RF +P +K+ +LSRF+S E+ + + M+ G ++I+V
Sbjct: 673 KQVAFLCPTTILAEQHYNNFVQRFKDFP-VKIEMLSRFRSNKEQSQIIKMVADGTVDILV 731
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + V + +LGLL++DEEQRFGVK KEKI K ++DVL+LSATPIPRTL+++L
Sbjct: 732 GTHKILQNDVKFKDLGLLIIDEEQRFGVKHKEKIKKLKENIDVLSLSATPIPRTLHMSLV 791
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ PP +R P++T++ F+++ + AI EL RGGQV++V RI G+E
Sbjct: 792 GIRDMSVLENPPEDRYPVQTYVVEFNEDLIRDAILRELGRGGQVYFVYNRIDGIERMASI 851
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P IA+AHGQ +LE+ M F IL+CT I+E+GLDI N NTIIV D
Sbjct: 852 LKELVPEARIAVAHGQMDEGRLEDIMIGFLNREYDILVCTTIIETGLDIPNVNTIIVYDS 911
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y ++++ A +RL A++E E G GF++A +
Sbjct: 912 DKMGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVITEVAEKRLEAIKEFTEFGSGFKIAMR 971
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G +Q G + VG D++ +L E++ + P + IDI ++
Sbjct: 972 DLEIRGAGNLLGAEQHGHIDAVGYDMYLRLLDEAIKNLKGISEEDKP--NTAIDIKVSAY 1029
Query: 692 LPSEYINHLENPMEMVNEAEKAA-EQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+ EYI +EM + E+D+ + L ++ + P ++E L+ Y++
Sbjct: 1030 IDKEYIEDENQRLEMYKKISSIENEKDVE---DIKDELIDRFKEYPKAVEALIDVAYLKA 1086
Query: 751 MAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG 798
+A D I +I G + +K NK + ++D++ +E + + F G
Sbjct: 1087 LARDANILEITERGNSIILKFKDNKSINSRIVDALVNE-FKGKIMFSG 1133
>gi|347547686|ref|YP_004854014.1| putative transcription-repair coupling factor [Listeria ivanovii
subsp. ivanovii PAM 55]
gi|346980757|emb|CBW84664.1| Putative transcription-repair coupling factor [Listeria ivanovii
subsp. ivanovii PAM 55]
Length = 1179
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 254/620 (40%), Positives = 378/620 (60%), Gaps = 22/620 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L+ GDYVVH GI ++VG++ D+ + V +Y+ + Y G KL PV Q
Sbjct: 494 RIQSYSELKVGDYVVHINHGIARYVGMETLDI---NGVHKDYLLLVY-QGEDKLFIPVDQ 549
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L + + E K PR L+KL T W+R K K + ++Q + DL++LY R +K
Sbjct: 550 LD--LVQKYVGAEGKSPR-LNKLGGT-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 264 PY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ P EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALR
Sbjct: 606 AFSPDEEMQREFEDAFPYQETDDQLRSIAEIKKDM-ERPRPMDRLLVGDVGYGKTEVALR 664
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +
Sbjct: 665 AAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGV 723
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K G ++I+VGTH LL V Y++LGLL+VDEEQRFGV KEKI + +DVLTL+ATPI
Sbjct: 724 KSGTVDIVVGTHRLLSKDVEYHDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPI 783
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R+
Sbjct: 784 PRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRV 843
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + D + P +AIAHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 844 ETITQKADEISAMVPDARVAIAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPN 903
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+ VQD + GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E EL
Sbjct: 904 VNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTEL 963
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ K E VP
Sbjct: 964 GSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP-- 1021
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+IDI + +P YI +EM + + L + + ++G+ P +E
Sbjct: 1022 -VEIDIQADAYIPEYYITDGRQKIEMYKRFRNI--EVLNDLEELQSDMIDRFGEYPEEVE 1078
Query: 741 ILLKKLYVRRMAADIGITKI 760
L ++ A ++GI +
Sbjct: 1079 YLFTMTELKVHALEVGIESV 1098
>gi|424768344|ref|ZP_18195629.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CM05]
gi|402348618|gb|EJU83599.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CM05]
gi|408422939|emb|CCJ10350.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ST228]
gi|408424927|emb|CCJ12314.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ST228]
gi|408426916|emb|CCJ14279.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ST228]
gi|408428904|emb|CCJ26069.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ST228]
gi|408430892|emb|CCJ18207.1| Transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus ST228]
gi|408432886|emb|CCJ20171.1| Transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus ST228]
gi|408434875|emb|CCJ22135.1| Transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus ST228]
gi|408436860|emb|CCJ24103.1| Transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus ST228]
Length = 1168
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 242/626 (38%), Positives = 391/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++G+
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIGI 1102
>gi|257432620|ref|ZP_05608982.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus E1410]
gi|257282485|gb|EEV12618.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus E1410]
Length = 1168
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 392/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQIHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P+ +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPENKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|402495661|ref|ZP_10842384.1| transcription-repair coupling factor [Aquimarina agarilytica ZC1]
Length = 1120
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 251/647 (38%), Positives = 376/647 (58%), Gaps = 27/647 (4%)
Query: 139 YNGAGGFSYKV-----DPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEY 192
+N GF+ K + SL GDYV H GIGKF G+ K DV I+ ++ E
Sbjct: 419 FNLKNGFAKKQAITIKELTSLEIGDYVTHIDHGIGKFAGLQKIDVDGRKQEAIKLIYGER 478
Query: 193 ADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLME 252
+ L + A + ++N + K P + KL + AW+ K K K ++ + +L++
Sbjct: 479 --DILYLSI-HALHKISKFN-GKDGKVP-VVHKLG-SKAWKTLKNKTKARVKHIAYNLIQ 532
Query: 253 LYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGD 311
LY R QK Y P + E A F YE TPDQ A V+ D+ E E PMDRL+CGD
Sbjct: 533 LYAKRRLQKGFQYAPDSYLQHELEASFLYEDTPDQSTATAAVKADM-EGEQPMDRLVCGD 591
Query: 312 VGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQS 371
VGFGKTEVA+RA F V GKQ +L PT VLA QH+ SER +P + V L+RF++
Sbjct: 592 VGFGKTEVAVRAAFKAVDNGKQVAILVPTTVLAFQHYKTFSERLKDFP-VTVDYLNRFRT 650
Query: 372 KAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKIS 431
+K E L+ + GH++I++GTH L V + +LGLL++DEEQ+FGV K+K+ + K +
Sbjct: 651 AKQKRETLEKLAKGHVDIVIGTHQLASKNVKFKDLGLLIIDEEQKFGVAVKDKLKTIKAN 710
Query: 432 VDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDR 491
VD LTL+ATPIPRTL +L RD S I+TPPP R PI+T + F++E + A+ YE+ R
Sbjct: 711 VDTLTLTATPIPRTLQFSLMAARDLSTIATPPPNRYPIETEVIRFNEETIRDAVSYEIQR 770
Query: 492 GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICT 551
GGQVF++ R++ ++E +Q+ P +A+ HGQ +QLE+ M F +GA +L+ T
Sbjct: 771 GGQVFFIHNRVQNIKEVAGMIQRLVPDAKVAVGHGQMEGKQLEKLMLDFMEGAFDVLVST 830
Query: 552 NIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALE 611
I+ESGLD+ NANTI + + FG++ L+Q+RGRVGR++K+A Y P S +++ A +
Sbjct: 831 TIIESGLDVSNANTIFINNANNFGISDLHQMRGRVGRSNKKAFCYFITPPYSAMTEDARK 890
Query: 612 RLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDE 671
R+ AL + ELG G Q+A KD+ IRG G + G +Q+G + +G D + ++L E++ ++ E
Sbjct: 891 RITALVQFSELGSGIQIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIEELKE 950
Query: 672 HCVIS---------VPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLM 722
+ V K QID + + P +YIN + + + + K ++ L
Sbjct: 951 NEFKDLYKDEQKEKVFLKDTQIDTDFSLLFPDDYINSISERLSLYTDLNKLKTEEELVL- 1009
Query: 723 QFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI-YASGKMVG 768
F + L ++G P E LL + ++ MA IG+ KI K++G
Sbjct: 1010 -FEKDLVDRFGALPAQAEDLLNSVRLKWMATRIGLEKIVLKQDKLIG 1055
>gi|421859825|ref|ZP_16292015.1| transcription-repair coupling factor [Paenibacillus popilliae ATCC
14706]
gi|410830586|dbj|GAC42452.1| transcription-repair coupling factor [Paenibacillus popilliae ATCC
14706]
Length = 1171
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 242/625 (38%), Positives = 383/625 (61%), Gaps = 16/625 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH+ GIGK++GI + + + +Y+ I YA G +PV Q ++ RY
Sbjct: 486 LKIGDYVVHQNHGIGKYIGI--GTLEINGIHKDYLHIMYAGGDKLSVPVDQL-HLIQRY- 541
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA-I 271
+ +E K P+ + KL T W + K K + +++ + DL++LY R + K+ +
Sbjct: 542 VSSEEKEPK-IYKLGGTE-WTKVKNKVRSSVKDIADDLIKLYAARQASSGYAFDKDTSEQ 599
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F FPYE T DQ +A ++++D+ E PMDRL+CGDVG+GKTEVA+RA F G
Sbjct: 600 QDFEDLFPYEETRDQLRAIAEIKKDM-ELPRPMDRLLCGDVGYGKTEVAVRAAFKAAIEG 658
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT +LA+QH++ ERF+ YP + ++SRF+S+ E+ E + +K G +++++
Sbjct: 659 KQVAILVPTTILAQQHYETFRERFADYP-FHIQVMSRFRSRKEQNETIKGLKTGSVDVVI 717
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL VV+ +GLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++
Sbjct: 718 GTHRLLSQDVVFKEIGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML 777
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T++ +S V AI+ EL R GQV+++ R++G+ + D
Sbjct: 778 GVRDLSVIETPPENRFPVQTYVLEYSDSLVREAIERELARDGQVYFLFNRVQGIHQMADH 837
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
++ P +A++HGQ +LE+T+ F G +L+ T+I+E+G+DI N NT+IV D
Sbjct: 838 IKMLVPEAKVAVSHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA 897
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +
Sbjct: 898 DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLNEVAEKRLQAIKEFTELGSGFKIAMR 957
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISVPYKSVQIDIN 687
D+ IRG G + G +Q G + +VG DL+ +ML + ++K +D + S +D+N
Sbjct: 958 DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLADEINKRKVELDGVAIHDQQELSTIVDLN 1017
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
I+ LP YI +E+ + A + + + + L ++G+ P ++ LL
Sbjct: 1018 IDAYLPPNYIYDSIQKIEIYKKV--AGLASLEEVEELRDELIDRFGEPPLAVLQLLAVAR 1075
Query: 748 VRRMAADIGITKIYASGKMVGMKTN 772
++ A G+ I G V MK +
Sbjct: 1076 LKLHARQYGLESIVQRGDTVTMKVH 1100
>gi|452991353|emb|CCQ97341.1| Transcription-repair-coupling factor [Clostridium ultunense Esp]
Length = 1180
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 239/619 (38%), Positives = 382/619 (61%), Gaps = 14/619 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+ GD+VVH+ GIG++ GI + ++Q + +Y+ I Y G KL V L +
Sbjct: 512 LKIGDFVVHENHGIGQYEGIEQLNIQ---GIIKDYLTIRYR-GNDKLYVPIDQMNLIQKY 567
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+ ++ +P+ ++KLS + W R K + K A++ M DL+ELY R K + K+
Sbjct: 568 IGADSIKPK-VNKLS-SLEWSRTKQRAKKAVEDMAKDLLELYAKRESLKGFSFSKDTVWQ 625
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
++F FPYE T Q K+ D++RD+ E+ PMDRL+CGDVG+GKTEVALRA F + G
Sbjct: 626 SQFEDLFPYEETEGQIKSIEDIKRDM-EKGKPMDRLLCGDVGYGKTEVALRAAFKAIMDG 684
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERFS +P IK +LSRF++ E+++ +D I+ G ++I+V
Sbjct: 685 KQVAFLVPTTILAQQHYNTIMERFSTFP-IKAAMLSRFRTVKEQKDTIDGIRKGTIDIVV 743
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V++ +LGLL+VDEEQRFGVK KE + K +VDVLTL+ATPIPRTL+++L
Sbjct: 744 GTHRLLSKDVIFKDLGLLIVDEEQRFGVKHKETLKKLKENVDVLTLTATPIPRTLHMSLI 803
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I PP ER P++T++ F+++ + AI E++RGGQV++V R++ +++
Sbjct: 804 GIRDMSVIDEPPEERYPVQTYVVEFNEQMIREAILKEMERGGQVYFVYNRVETIDKMAVQ 863
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P I + HGQ R+LE+ M F +L+CT I+E+GLDI N NTII+ D
Sbjct: 864 LKKLVPEASITVGHGQMSERELEKVMMDFISNEYHVLVCTTIIETGLDIPNVNTIIIYDA 923
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQL+GRVGR +K A+AY Y +L++ A +RL A+++ E G G+++A +
Sbjct: 924 DKMGLSQLYQLKGRVGRTNKVAYAYFTYEKNKVLTEVAEKRLRAIKDFTEFGSGYKIAMR 983
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G +Q G + +G DL+ + L +++ K+ + ID+ I+
Sbjct: 984 DLEIRGAGNLLGVEQHGHIEAIGYDLYVKFLNQTIKKIKGEDFEEIV--DTTIDLAIDGY 1041
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
+ S+YI E +E+ + +++ + + + L ++G P + L+ Y++
Sbjct: 1042 ISSKYIEDEEQKIEIYKKIAAIVDEEDYN--ELLDELIDRFGDIPKEVNNLMDISYIKNN 1099
Query: 752 AADIGITKIYASGKMVGMK 770
A+ I I S ++ ++
Sbjct: 1100 ASLYHIKNISQSENIITLE 1118
>gi|408673356|ref|YP_006873104.1| transcription-repair coupling factor [Emticicia oligotrophica DSM
17448]
gi|387854980|gb|AFK03077.1| transcription-repair coupling factor [Emticicia oligotrophica DSM
17448]
Length = 1113
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 250/640 (39%), Positives = 380/640 (59%), Gaps = 32/640 (5%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
+L++GD+V H GIG+FVG++ + D E V + Y D L + + +Y+
Sbjct: 433 ALQTGDFVTHIDYGIGRFVGLEKVMVGDKEQ--EAVRLIYRDNDILLVNIHSLHKIAKYS 490
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+ P T+SKL + WE +K+K K ++ + +L+ LY R + K+ +
Sbjct: 491 --GKEGSPPTMSKLG-SGEWENKKSKVKRQVKDIAKELISLYAKRRLAPGFQFSKDGFMQ 547
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
AE + F YE TPDQ KA DV+ D+ E+ PMDRL+CGDVGFGKTE+A+RA F V+
Sbjct: 548 AELESSFLYEDTPDQAKATADVKDDM-EKPHPMDRLVCGDVGFGKTEIAIRAAFKSVADS 606
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT VLA QH ER SK+P + + +SRF+S E + L +K G +I+V
Sbjct: 607 KQVAVLVPTTVLAMQHTRTFKERLSKFP-VNIEEISRFKSAKEISQTLKNVKEGKTDILV 665
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + + NLGLL++DEEQ+FGVK K+++ K +VDVLTL+ATPIPRTL+ +L
Sbjct: 666 GTHRILNKDIEFKNLGLLIIDEEQKFGVKAKDRLKEIKHNVDVLTLTATPIPRTLHFSLL 725
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+ISTPPP R P+ T + F +E + AI YEL RGGQVF+V R+ +E +
Sbjct: 726 GARDLSIISTPPPNRQPVTTEVHVFKEEFIRDAISYELKRGGQVFFVHNRVNDIESIANI 785
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+ + P I IAHGQ +LE+ M KF +G IL+ TNI+ESGLDI NANTII+
Sbjct: 786 ILRLVPDAKIGIAHGQMDGDKLEKVMMKFIEGDYDILVSTNIIESGLDISNANTIIINQA 845
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
Q FG++ L+Q+RGRVGR++++A YL P S+LS + +RL LEE +LG GF+++ +
Sbjct: 846 QNFGMSDLHQMRGRVGRSNRKAFCYLLTPPISVLSKDSRKRLQTLEEFSDLGDGFKVSMR 905
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEH-------------CVISVP 678
D+ IRG G + G +Q+G + ++G + + ++L E++ ++ E+ + +P
Sbjct: 906 DLDIRGAGNLLGAEQSGFINDLGYETYHKILDEAVQELKENEFKDLFMKELGTPLDLKLP 965
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
++ D+ I +P Y+ ++ + + N+ + ++D L +F +S+ ++G P
Sbjct: 966 DCLIETDLQI--IIPETYVGNISERLSLYNQLDNIEKED--ELQEFHKSMIDRFGPMPEE 1021
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVF 778
+E L K +R A IG K+ +K N+ K F
Sbjct: 1022 VENLFKIARIRWKAEQIGFEKL-------TLKNNIAKGYF 1054
>gi|418071051|ref|ZP_12708325.1| transcription-repair coupling factor [Lactobacillus rhamnosus R0011]
gi|357538545|gb|EHJ22565.1| transcription-repair coupling factor [Lactobacillus rhamnosus R0011]
Length = 1175
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 240/601 (39%), Positives = 378/601 (62%), Gaps = 14/601 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++ G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 495 LKPGDYVVHVNHGIGQYTGME-TLEVDG-VHRDYITIVYRNNDKLFIPVDQLN-LVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ + K P ++KL T W++ K K I+ + +L++LY R +K + P +
Sbjct: 551 VSADGKTP-NVNKLG-GTEWQKTKRKVAARIEDIADELIDLYAKREAEKGYAFGPDDDLQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F +FPY TPDQ ++ +++RD+ E+ PMDRL+ GDVGFGKTEVALRA F V G
Sbjct: 609 QKFEDEFPYPETPDQLRSAKEIKRDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT +LA+QHFD + +RF+ +P +K+GLLSRFQ+ + + + +K+G ++I+V
Sbjct: 668 KQVAILVPTTILAQQHFDTMKDRFADFP-VKIGLLSRFQTPHQNKMTIKGLKNGTIDIVV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T + + + AI+ E++RGGQVFY+ R++ +E +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P I AHGQ QLE + F GA +L+ T I+E+G+D+ NANT+I+++
Sbjct: 847 LEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ A +RL A+++ ELG GF++A +
Sbjct: 907 DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + +V +ID+ +
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGLKTVQKTDAEIDLGLEAY 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP++Y+ +E+ +A + + +E L ++G P + LL +++R
Sbjct: 1025 LPTDYVADSRQKIELYKRIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRF 1082
Query: 752 A 752
A
Sbjct: 1083 A 1083
>gi|374855224|dbj|BAL58086.1| transcription-repair coupling factor [uncultured prokaryote]
Length = 1154
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 256/626 (40%), Positives = 373/626 (59%), Gaps = 17/626 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L G Y+VH + GI +F G+ +K V EY+ ++YA+G +P Q + Y
Sbjct: 473 LEVGCYLVHAEHGIARFGGLVR--RKVGGVEREYLELQYAEGDRLYVPTDQLDSISL-YV 529
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAI 271
P++ RP TL++L T W K + + A+ + DL+ELY R + +P + P
Sbjct: 530 GPSD--RPPTLTRLG-TGEWAHTKRRVQRAVASIARDLLELYAKRQLARGFAFPPDTPWQ 586
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E A FPY TPDQ A +V+RD+ E PMDRLICGDVGFGKTEVA+RA F V AG
Sbjct: 587 LEMEAAFPYVETPDQLAAIQEVKRDM-ESPRPMDRLICGDVGFGKTEVAIRAAFKAVMAG 645
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT VLA+QH ER + +P +++ +LSRF+S+AE+ +D G ++I++
Sbjct: 646 KQVAVLVPTTVLAEQHGRTFRERLAGFP-VRIEVLSRFRSEAEQRAIVDATARGEVDILI 704
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L V + +LGLLVVDEEQRFGV QKE++ + +DVL+LSATPIPRTL ++L+
Sbjct: 705 GTHRILQKDVQFKDLGLLVVDEEQRFGVAQKEQLKKMRTEIDVLSLSATPIPRTLQMSLS 764
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S I TPP +R P++T+++A+ E V AI EL RGGQV++V R++ + +
Sbjct: 765 GIRDMSTIMTPPEDRQPVRTYVTAWDDEIVREAIMRELQRGGQVYFVHNRVQSIGRVYER 824
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L+ P IA+AHGQ QLE M +FA G +L+CT I+ESGLDI N NTIIV
Sbjct: 825 LRALVPEARIAVAHGQMPEEQLERVMAEFAAGEHDVLLCTTIIESGLDIPNVNTIIVDQA 884
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GLAQLYQLRGRVGR+D++A+AYL Y LS+ A RL A+ E +ELG G Q+A +
Sbjct: 885 DRLGLAQLYQLRGRVGRSDRQAYAYLLYSSNRALSEAAQRRLEAIFESQELGAGLQIALR 944
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV-----DEHCVISVPYKSVQIDI 686
D+ IRG G + G +Q+G + VG +L+ ++L E++ + + + S +++
Sbjct: 945 DLEIRGAGNLLGTEQSGYIAAVGFELYTKLLAEAVETLRRAYAGQPPLPSPAAPPPVVEL 1004
Query: 687 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
++ +P EY+ E + + A + Q E LR ++G P +E LL
Sbjct: 1005 PLSAYVPEEYVP--EPRLRLAIYQRLAQASTTAAIAQLQEELRDRFGPLPEPVEHLLLLG 1062
Query: 747 YVRRMAADIGITKIYASGKMVGMKTN 772
+R +A + + A ++V ++
Sbjct: 1063 LIRVLAVRANVESVAADEEVVHIRVR 1088
>gi|403386101|ref|ZP_10928158.1| transcription-repair coupling factor [Kurthia sp. JC30]
Length = 1174
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 263/704 (37%), Positives = 412/704 (58%), Gaps = 51/704 (7%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI-----EYVFIEYADGMAKL--PVKQASR 206
++ GDYVVH GIGK+VGI+ T+ + +Y+ I Y G KL PV Q
Sbjct: 496 IKPGDYVVHVHHGIGKYVGIE-------TLEVGGQHKDYLNIVYR-GNDKLFVPVDQID- 546
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY- 265
++ +Y + +E K L KL T W++ K K A+Q + DL++LY R +K +
Sbjct: 547 LIQKY-VASEDKSSPKLHKLGGT-EWQKTKRKVSSAVQDIADDLIKLYAKREAEKGYAFS 604
Query: 266 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
P + F FPYE T DQ + +V+ D+ ERE PMDRL+CGDVG+GKTEVA+RA +
Sbjct: 605 PDGDEMRNFEMNFPYEETEDQLRTIREVKADM-ERERPMDRLVCGDVGYGKTEVAIRAAY 663
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
+ GKQ L PT +LA+QHF+ + ERF + + VG+LSRF+++ ++ E L +K G
Sbjct: 664 KAILDGKQVAFLVPTTILAQQHFETLQERFQE-EGVNVGMLSRFRTRKQQTETLKGLKDG 722
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++I+VGTH LL V+YN+LGLL+VDEEQRFGV KEKI + + +VDVLTL+ATPIPRT
Sbjct: 723 TVDIVVGTHRLLSKDVIYNDLGLLIVDEEQRFGVTHKEKIKTLRANVDVLTLTATPIPRT 782
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L++++ G RD S+I TPP R P++T++ + V AI+ E+ RGGQVFY+ R++ +
Sbjct: 783 LHMSMVGVRDLSVIETPPANRFPVQTYVMEHNGALVREAIEREMSRGGQVFYLHNRVEDM 842
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
++ +Q P I AHG+ +LE + F +G +L+ T I+E+G+D+ NANT
Sbjct: 843 AREVEKIQMLVPEARIGHAHGKMTESELESMVYGFLEGEYDVLVTTTIIETGVDMPNANT 902
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
+IV + GL+QLYQLRGRVGR+++ A+AY Y +L++ + +RL A++E ELG G
Sbjct: 903 LIVNNADHMGLSQLYQLRGRVGRSNRVAYAYFMYQRDKVLTEVSEQRLQAIKEFTELGSG 962
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQ 683
F++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ ++ + ++ +
Sbjct: 963 FKIAMRDLSIRGAGNLLGSQQHGFIDSVGFDLYSQMLEEAVKERQIAKGEEVAPIMPDPE 1022
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
I + + +P +YI ++M + Q+++ + E + ++G P E L+
Sbjct: 1023 IMLPYDAYIPDQYIPDGYQKIQMYKRIKAIDSQEMYD--EIIEEMHDRFGDMPQETERLM 1080
Query: 744 KKLYVRRMAADIGITKIYASGKMVGMK-----TNMNKKVFKMMIDSM--------TSEVH 790
+ +R A +G+ I K+V ++ +NM K++ DSM T E +
Sbjct: 1081 RIALMRATAMKVGVESIKEKNKIVRIQFSDIGSNMVDGA-KIVSDSMQFGRAVGFTFENN 1139
Query: 791 RNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIK 834
+ +LT + ++ +LP F L +L A LP+ +K
Sbjct: 1140 KLALTLDERKVSG----DLP--------FNVLEKLMAGLPSALK 1171
>gi|291087006|ref|ZP_06345122.2| transcription-repair coupling factor [Clostridium sp. M62/1]
gi|291076614|gb|EFE13978.1| transcription-repair coupling factor [Clostridium sp. M62/1]
Length = 1187
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 242/617 (39%), Positives = 384/617 (62%), Gaps = 14/617 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQAS 205
K+ +S L GDYVVH+ G+G + GI+ +++D V +Y+ IEYADG LP +
Sbjct: 501 KIQSFSELSVGDYVVHENHGLGIYRGIE-KIEQDKVVK-DYIKIEYADGGNLYLPATKLE 558
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
+ +Y + KRP+ L++L + W + KT+ + A++++ DL++LY R +Q+ Y
Sbjct: 559 G-IQKYA-GADAKRPK-LNRLG-GSEWNKTKTRVRGAVKEIAKDLVKLYAARQEQEGFQY 614
Query: 266 -PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P EF FPYE T DQ +A V+RD+ R+ MDRLICGDVG+GKTE+ALRA
Sbjct: 615 GPDTVWQREFEEMFPYEETEDQLEAIDAVKRDMESRKI-MDRLICGDVGYGKTEIALRAA 673
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F + GKQ + L PT +LA+QH++ +R +P ++V +LSRF++ AE++ L+ +K
Sbjct: 674 FKAIQEGKQVVYLVPTTILAQQHYNTFVQRMKDFP-VRVDMLSRFRTPAEQKRTLEDLKK 732
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G +++++GTH +L V + +LGLL++DEEQRFGV KEKI K +VDV+TL+ATPIPR
Sbjct: 733 GFVDVLIGTHRVLSKDVEFKSLGLLIIDEEQRFGVAHKEKIKKLKENVDVITLTATPIPR 792
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL+++L G RD S++ PP +RLPI+T++ ++ E V AI E+ RGGQV+YV R+
Sbjct: 793 TLHMSLIGIRDMSVLEEPPVDRLPIQTYVMEYNDEMVREAINREVARGGQVYYVYNRVNN 852
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE + + P + AHGQ +LE M F G I +L+ T I+E+GL+I NAN
Sbjct: 853 IEEIANHVASLVPDAQVTFAHGQMREHELERIMLDFVNGDIDVLVSTTIIETGLNIPNAN 912
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TII+ D + GL+QLYQ+RGRVGR+ + ++A+L Y LL ++A +RL A+ E ELG
Sbjct: 913 TIIIHDADRLGLSQLYQIRGRVGRSSRTSYAFLMYRRDKLLREEAEKRLQAIREFTELGS 972
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G ++A +D+ IRG G I G +Q G + VG DL+ ++L E++ + +++ +
Sbjct: 973 GIKIAMRDLEIRGAGNILGAEQHGHMEAVGYDLYCKLLNEAVLALKGETEEGAEFETT-V 1031
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D +I+ +P+ YI + +++ ++ + MQ + L ++G+ P +E LL+
Sbjct: 1032 DCDIDAYIPASYIKNEYQKLDIYKRISGIESEEEYMDMQ--DELIDRFGEIPGPVENLLR 1089
Query: 745 KLYVRRMAADIGITKIY 761
++ +A G+T ++
Sbjct: 1090 VAALKALAHRAGVTDVF 1106
>gi|199598792|ref|ZP_03212204.1| Transcription-repair coupling factor (superfamily II helicase)
[Lactobacillus rhamnosus HN001]
gi|199590297|gb|EDY98391.1| Transcription-repair coupling factor (superfamily II helicase)
[Lactobacillus rhamnosus HN001]
Length = 1175
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 240/601 (39%), Positives = 378/601 (62%), Gaps = 14/601 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++ G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 495 LKPGDYVVHVNHGIGQYTGME-TLEVDG-VHRDYITIVYRNNDKLFIPVDQLN-LVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ + K P ++KL T W++ K K I+ + +L++LY R +K + P +
Sbjct: 551 VSADGKTP-NVNKLG-GTEWQKTKRKVAARIEDIADELIDLYAKREAEKGYAFGPDDDLQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F +FPY TPDQ ++ +++RD+ E+ PMDRL+ GDVGFGKTEVALRA F V G
Sbjct: 609 QKFEDEFPYPETPDQLRSAKEIKRDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT +LA+QHFD + +RF+ +P +K+GLLSRFQ+ + + + +K+G ++I+V
Sbjct: 668 KQVAILVPTTILAQQHFDTMKDRFADFP-VKIGLLSRFQTPHQNKMTIKGLKNGTIDIVV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T + + + AI+ E++RGGQVFY+ R++ +E +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P I AHGQ QLE + F GA +L+ T I+E+G+D+ NANT+I+++
Sbjct: 847 LEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ A +RL A+++ ELG GF++A +
Sbjct: 907 DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + +V +ID+ +
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGLKTVQKTDAEIDLGLEAY 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP++Y+ +E+ +A + + +E L ++G P + LL +++R
Sbjct: 1025 LPTDYVADSRQKIELYKRIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRF 1082
Query: 752 A 752
A
Sbjct: 1083 A 1083
>gi|383451801|ref|YP_005358522.1| transcription-repair coupling factor [Flavobacterium indicum
GPTSA100-9]
gi|380503423|emb|CCG54465.1| Transcription-repair coupling factor [Flavobacterium indicum
GPTSA100-9]
Length = 1117
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 243/633 (38%), Positives = 373/633 (58%), Gaps = 30/633 (4%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
SL GDYV H GIGKF G+ K V+ + I+ V YAD + + +Y
Sbjct: 435 SLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLV---YADNDIVYVSIHSLHKISKY 491
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
N + P + KL + AW+ K K K ++ + +L++LY R K + P
Sbjct: 492 N--GKDGAPPKIYKLG-SNAWKALKQKTKARVKHIAFNLIQLYAKRRLDKGYAFGPDTYM 548
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E + F YE TPDQ KA DV+ D+ E + PMDRL+CGDVGFGKTEVA+RA F V
Sbjct: 549 QKELESSFIYEDTPDQVKATHDVKMDM-ESDRPMDRLVCGDVGFGKTEVAIRAAFKAVDN 607
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ +L PT +LA QH+ SER P + V L+RF++ +K E L ++ G ++I+
Sbjct: 608 GKQVAILVPTTILAYQHYRTFSERLKDLP-VTVSYLNRFRTAKQKAETLKGLEEGKIDIV 666
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ V + +LGLL++DEEQ+FGV K+K+ + ++D LTL+ATPIPRTL +L
Sbjct: 667 IGTHQLVNKNVKFRDLGLLIIDEEQKFGVNVKDKLKTIATNIDTLTLTATPIPRTLQFSL 726
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S+I+TPPP R P++T++ F++E + A+ YE++RGGQV+++ RI+ ++E
Sbjct: 727 MAARDLSVITTPPPNRYPVETNVIRFNEEAIRDAVSYEIERGGQVYFINNRIENIKEVAG 786
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P + + HGQ ++LEE M F +G +L+ T I+ESGLD+ NANTI + +
Sbjct: 787 MIQRLVPNAKVGVGHGQMDGKKLEELMLAFMEGEFDVLVATTIIESGLDVPNANTIFINN 846
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A Y P S ++D+A +R+ ALE+ ELG GF +A
Sbjct: 847 ANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTDEARKRIQALEQFSELGSGFNIAM 906
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV----------DEHCVISVPY- 679
KD+ IRG G + G +Q+G + +G D + +++ E++ ++ +E+ + + Y
Sbjct: 907 KDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYEEENDIETKEYI 966
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNE---AEKAAEQDIWCLMQFTESLRRQYGKEP 736
K +QID + P EYIN++ + + NE + AE D + + L ++G P
Sbjct: 967 KDIQIDTDFELLFPDEYINNITERLNLYNELSTIKSEAELDAY-----EQRLIDRFGPLP 1021
Query: 737 YSMEILLKKLYVRRMAADIGITK-IYASGKMVG 768
LL + ++ A +GI K I+ GKM+G
Sbjct: 1022 KPAIALLNSVRIKWKATQLGIEKLIFKQGKMIG 1054
>gi|421770635|ref|ZP_16207326.1| Transcription-repair coupling factor [Lactobacillus rhamnosus
LRHMDP2]
gi|421772807|ref|ZP_16209460.1| Transcription-repair coupling factor [Lactobacillus rhamnosus
LRHMDP3]
gi|411181741|gb|EKS48904.1| Transcription-repair coupling factor [Lactobacillus rhamnosus
LRHMDP2]
gi|411183221|gb|EKS50361.1| Transcription-repair coupling factor [Lactobacillus rhamnosus
LRHMDP3]
Length = 1175
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 240/601 (39%), Positives = 378/601 (62%), Gaps = 14/601 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++ G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 495 LKPGDYVVHVNHGIGQYTGME-TLEVDG-VHRDYITIVYRNNDKLFIPVDQLN-LVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ + K P ++KL T W++ K K I+ + +L++LY R +K + P +
Sbjct: 551 VSADGKTP-NVNKLG-GTEWQKTKRKVAARIEDIADELIDLYAKREAEKGYAFGPDDDLQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F +FPY TPDQ ++ +++RD+ E+ PMDRL+ GDVGFGKTEVALRA F V G
Sbjct: 609 QKFEDEFPYPETPDQLRSAKEIKRDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT +LA+QHFD + +RF+ +P +K+GLLSRFQ+ + + + +K+G ++I+V
Sbjct: 668 KQVAILVPTTILAQQHFDTMKDRFADFP-VKIGLLSRFQTPHQNKMTIKGLKNGTIDIVV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T + + + AI+ E++RGGQVFY+ R++ +E +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P I AHGQ QLE + F GA +L+ T I+E+G+D+ NANT+I+++
Sbjct: 847 LEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ A +RL A+++ ELG GF++A +
Sbjct: 907 DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + +V +ID+ +
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGLKTVQKTDAEIDLGLEAY 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP++Y+ +E+ +A + + +E L ++G P + LL +++R
Sbjct: 1025 LPTDYVADSRQKIELYKRIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRF 1082
Query: 752 A 752
A
Sbjct: 1083 A 1083
>gi|295090936|emb|CBK77043.1| transcription-repair coupling factor [Clostridium cf. saccharolyticum
K10]
Length = 1185
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 242/617 (39%), Positives = 384/617 (62%), Gaps = 14/617 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQAS 205
K+ +S L GDYVVH+ G+G + GI+ +++D V +Y+ IEYADG LP +
Sbjct: 499 KIQSFSELSVGDYVVHENHGLGIYRGIE-KIEQDKVVK-DYIKIEYADGGNLYLPATKLE 556
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
+ +Y + KRP+ L++L + W + KT+ + A++++ DL++LY R +Q+ Y
Sbjct: 557 G-IQKYA-GADAKRPK-LNRLG-GSEWNKTKTRVRGAVKEIAKDLVKLYAARQEQEGFQY 612
Query: 266 -PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P EF FPYE T DQ +A V+RD+ R+ MDRLICGDVG+GKTE+ALRA
Sbjct: 613 GPDTVWQREFEEMFPYEETEDQLEAIDAVKRDMESRKI-MDRLICGDVGYGKTEIALRAA 671
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F + GKQ + L PT +LA+QH++ +R +P ++V +LSRF++ AE++ L+ +K
Sbjct: 672 FKAIQEGKQVVYLVPTTILAQQHYNTFVQRMKDFP-VRVDMLSRFRTPAEQKRTLEDLKK 730
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G +++++GTH +L V + +LGLL++DEEQRFGV KEKI K +VDV+TL+ATPIPR
Sbjct: 731 GFVDVLIGTHRVLSKDVEFKSLGLLIIDEEQRFGVAHKEKIKKLKENVDVITLTATPIPR 790
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL+++L G RD S++ PP +RLPI+T++ ++ E V AI E+ RGGQV+YV R+
Sbjct: 791 TLHMSLIGIRDMSVLEEPPVDRLPIQTYVMEYNDEMVREAINREVARGGQVYYVYNRVNN 850
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+EE + + P + AHGQ +LE M F G I +L+ T I+E+GL+I NAN
Sbjct: 851 IEEIANHVASLVPDAQVTFAHGQMREHELERIMLDFVNGDIDVLVSTTIIETGLNIPNAN 910
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TII+ D + GL+QLYQ+RGRVGR+ + ++A+L Y LL ++A +RL A+ E ELG
Sbjct: 911 TIIIHDADRLGLSQLYQIRGRVGRSSRTSYAFLMYRRDKLLREEAEKRLQAIREFTELGS 970
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
G ++A +D+ IRG G I G +Q G + VG DL+ ++L E++ + +++ +
Sbjct: 971 GIKIAMRDLEIRGAGNILGAEQHGHMEAVGYDLYCKLLNEAVLALKGETEEGAEFETT-V 1029
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D +I+ +P+ YI + +++ ++ + MQ + L ++G+ P +E LL+
Sbjct: 1030 DCDIDAYIPASYIKNEYQKLDIYKRISGIESEEEYMDMQ--DELIDRFGEIPGPVENLLR 1087
Query: 745 KLYVRRMAADIGITKIY 761
++ +A G+T ++
Sbjct: 1088 VAALKALAHRAGVTDVF 1104
>gi|302388692|ref|YP_003824513.1| transcription-repair coupling factor [Thermosediminibacter oceani DSM
16646]
gi|302199320|gb|ADL06890.1| transcription-repair coupling factor [Thermosediminibacter oceani DSM
16646]
Length = 1177
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 238/519 (45%), Positives = 337/519 (64%), Gaps = 12/519 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L +GDYVVH GIG+++GI+ +V+ +Y I+YA G +P Q ML++Y
Sbjct: 505 LSAGDYVVHITHGIGRYLGIETLEVEGHKK---DYFAIQYAGGDKLYVPTDQVE-MLHKY 560
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
P + RP L+KL ++ W + KT+ K ++++M +L+ELY R K + P
Sbjct: 561 VGPED--RPPKLNKLG-SSEWAKAKTRVKESVKEMAKELLELYAARQAMKGFAFSPDTVW 617
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF FPYE TPDQ A +V+RD+ E + MDRL+CGDVG+GKTEVALRA F V
Sbjct: 618 QKEFEDLFPYEETPDQLTAIEEVKRDM-ESDKCMDRLLCGDVGYGKTEVALRAAFKAVMD 676
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
KQ VL PT +LA+QH+ SERF+ +P ++V ++SRF+SKAE++ + +K+G ++II
Sbjct: 677 AKQVAVLVPTTILAEQHYRTFSERFAPFP-VRVEVISRFKSKAEQKAIIKDLKNGAIDII 735
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH LL V + +LGLL++DEEQRFGV KEKI K +VDVLT++ATPIPRTL++A+
Sbjct: 736 IGTHRLLQKDVKFKDLGLLIIDEEQRFGVSHKEKIKQLKKNVDVLTMTATPIPRTLHMAM 795
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG RD S++ TPP R PI+T++ +S + AI EL RGGQV+YV R+ + E
Sbjct: 796 TGIRDMSVMETPPENRYPIQTYVVEYSDSLIRDAIMRELSRGGQVYYVYNRVNTIYEEAK 855
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L P IA+AHGQ + +LEE M F + +L+CT I+E+GLDI N NT+IV
Sbjct: 856 RLSALVPEARIAVAHGQMHENELEEVMMDFYEHRYDVLVCTTIIETGLDIPNVNTLIVIS 915
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+FGL+QLYQLRGRVGR+ +A AY Y LS+ A +RLAA+ + E G GF++A
Sbjct: 916 ADRFGLSQLYQLRGRVGRSSTQAFAYFTYKKDKTLSEAAEKRLAAIRDFTEFGAGFKIAL 975
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV 669
+D+ IRG G I G +Q G + VG DL+ ++L E++ ++
Sbjct: 976 RDLEIRGAGNILGTEQHGHMMTVGYDLYCKLLAEAVREL 1014
>gi|52078550|ref|YP_077341.1| transcription-repair coupling factor [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|404487420|ref|YP_006711526.1| transcription-repair coupling factor [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52001761|gb|AAU21703.1| transcription-repair coupling factor [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52346414|gb|AAU39048.1| transcription-repair-coupling factor Mfd [Bacillus licheniformis DSM
13 = ATCC 14580]
Length = 1177
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 251/644 (38%), Positives = 391/644 (60%), Gaps = 27/644 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + + +Y+ I Y G KL PV Q
Sbjct: 493 RIKSYSELQIGDYVVHVNHGIGKYLGI--ETLEINGIHKDYLNIHYQ-GSDKLYVPVDQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLG-GSEWKRVKKKVESSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + EF A FPY+ T DQ ++ +++RD+ E+E PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQREFEAAFPYQETEDQLRSIHEIKRDM-EKERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIADGKQVAILVPTTILAQQHYETILERFQDYP-INIGLLSRFRTRKEANETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKRIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E + + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKAEEISMLVPDAKVTYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + ++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEARKGDAPQAEKFEP-E 1022
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ ++ +P Y+ + ++M A I + + + ++G+ P +E L
Sbjct: 1023 IDLELDAYIPQTYVTDGKQKIDMYKRFR--AISTIEEKSELQDEMIDRFGEYPKEVEYLF 1080
Query: 744 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTS 787
I K+YA + V + +K ++ ID S
Sbjct: 1081 A----------IAEAKVYAIKERVEL-IKQDKDAVRLTIDEKAS 1113
>gi|410582391|ref|ZP_11319497.1| transcription-repair coupling factor Mfd [Thermaerobacter
subterraneus DSM 13965]
gi|410505211|gb|EKP94720.1| transcription-repair coupling factor Mfd [Thermaerobacter
subterraneus DSM 13965]
Length = 1196
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 258/624 (41%), Positives = 375/624 (60%), Gaps = 20/624 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
L+ GDYVVH GIG+F+G++ ++Q V +Y+ ++YA G +L V L +
Sbjct: 514 DLKPGDYVVHVHHGIGRFLGLRTMEIQG---VHRDYLTLQYAGG-DRLYVPTDQIELVQK 569
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
+ E +PR L++L + W + K + K ++++M +L+ LY R + + P P
Sbjct: 570 YVGAEGHQPR-LARLG-SGEWNKVKQRVKESVREMAGELLALYAARQSVRGHAFSPDTPW 627
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F FPY+ TPDQ A ++ D+ ER PMDRL+ GDVGFGKTEVA+RA F V
Sbjct: 628 QRQFEDAFPYQETPDQLAAIAAIKADM-ERPVPMDRLLVGDVGFGKTEVAMRAAFKAVQD 686
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ VL PT VLA QH ERF+ +P + + LSRF S AE+ E L + G ++I+
Sbjct: 687 GKQVAVLVPTTVLAYQHERTFKERFAPFP-VTIRTLSRFASPAEQAEILTGLAQGTVDIV 745
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ V + +LGLL++DEE RFGV KE++ K +VDVLTLSATPIPRTL++AL
Sbjct: 746 IGTHRLVQPDVRFKDLGLLIIDEEHRFGVAHKERLKQLKQNVDVLTLSATPIPRTLHMAL 805
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S I TPP R P++T + + + V AI+ EL RGGQVFYV R++ +
Sbjct: 806 AGIRDLSRIDTPPENRFPVQTFVVEWHESLVRDAIQRELRRGGQVFYVHNRVQSIHAVRR 865
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L++ P A+AHGQ +LE M F +G +L+CT I+ESGLDI N NT+IV+D
Sbjct: 866 RLERLLPEARFAVAHGQMAEGELERVMVDFMEGKADVLVCTTIIESGLDIPNVNTLIVED 925
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GLAQLYQLRGRVGR+D+ A+AY Y +L++ A +RL A+++ ELG GF+LA
Sbjct: 926 ADRMGLAQLYQLRGRVGRSDRVAYAYFTYRRDKVLTEDAQKRLQAIKDFTELGAGFKLAL 985
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G +Q G + +VG DL+ ++L E+++++ K V ID+ ++
Sbjct: 986 RDLEIRGAGNLLGAEQHGFMLSVGFDLYTQLLEEAVNELRGRQR-PARLKPV-IDLVVDA 1043
Query: 691 RLPSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
+P YI +E VN AE A+ L + E+L+ +YG P + LL
Sbjct: 1044 HIPDNYIRDARQKIEFYKKVNLAETPAD-----LAEVREALQDRYGPPPEPVRNLLALAE 1098
Query: 748 VRRMAADIGITKIYASGKMVGMKT 771
VR++AA G+ +I G + M+
Sbjct: 1099 VRQLAARCGVFRIEQQGTRIDMEA 1122
>gi|229551616|ref|ZP_04440341.1| transcription-repair coupling factor [Lactobacillus rhamnosus LMS2-1]
gi|229315020|gb|EEN80993.1| transcription-repair coupling factor [Lactobacillus rhamnosus LMS2-1]
Length = 1182
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 240/601 (39%), Positives = 378/601 (62%), Gaps = 14/601 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++ G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 502 LKPGDYVVHVNHGIGQYTGME-TLEVDG-VHRDYITIVYRNNDKLFIPVDQLN-LVQKY- 557
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ + K P ++KL T W++ K K I+ + +L++LY R +K + P +
Sbjct: 558 VSADGKTP-NVNKLG-GTEWQKTKRKVAARIEDIADELIDLYAKREAEKGYAFGPDDDLQ 615
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F +FPY TPDQ ++ +++RD+ E+ PMDRL+ GDVGFGKTEVALRA F V G
Sbjct: 616 QKFEDEFPYPETPDQLRSAKEIKRDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYG 674
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT +LA+QHFD + +RF+ +P +K+GLLSRFQ+ + + + +K+G ++I+V
Sbjct: 675 KQVAILVPTTILAQQHFDTMKDRFADFP-VKIGLLSRFQTPHQNKMTIKGLKNGTIDIVV 733
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++
Sbjct: 734 GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 793
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T + + + AI+ E++RGGQVFY+ R++ +E +
Sbjct: 794 GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 853
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P I AHGQ QLE + F GA +L+ T I+E+G+D+ NANT+I+++
Sbjct: 854 LEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 913
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ A +RL A+++ ELG GF++A +
Sbjct: 914 DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 973
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + +V +ID+ +
Sbjct: 974 DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGLKTVQKTDAEIDLGLEAY 1031
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP++Y+ +E+ +A + + +E L ++G P + LL +++R
Sbjct: 1032 LPTDYVADSRQKIELYKRIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRF 1089
Query: 752 A 752
A
Sbjct: 1090 A 1090
>gi|258540716|ref|YP_003175215.1| transcription-repair coupling factor [Lactobacillus rhamnosus Lc 705]
gi|385836345|ref|YP_005874120.1| transcription-repair coupling factor [Lactobacillus rhamnosus ATCC
8530]
gi|257152392|emb|CAR91364.1| Transcription-repair coupling factor [Lactobacillus rhamnosus Lc 705]
gi|355395837|gb|AER65267.1| transcription-repair coupling factor [Lactobacillus rhamnosus ATCC
8530]
Length = 1175
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 240/601 (39%), Positives = 378/601 (62%), Gaps = 14/601 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++ G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 495 LKPGDYVVHVNHGIGQYTGME-TLEVDG-VHRDYITIVYRNNDKLFIPVDQLN-LVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ + K P ++KL T W++ K K I+ + +L++LY R +K + P +
Sbjct: 551 VSADGKTP-NVNKLG-GTEWQKTKRKVAARIEDIADELIDLYAKREAEKGYAFGPDDDLQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F +FPY TPDQ ++ +++RD+ E+ PMDRL+ GDVGFGKTEVALRA F V G
Sbjct: 609 QKFEDEFPYPETPDQLRSAKEIKRDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT +LA+QHFD + +RF+ +P +K+GLLSRFQ+ + + + +K+G ++I+V
Sbjct: 668 KQVAILVPTTILAQQHFDTMKDRFADFP-VKIGLLSRFQTPHQNKMTIKGLKNGTIDIVV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T + + + AI+ E++RGGQVFY+ R++ +E +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P I AHGQ QLE + F GA +L+ T I+E+G+D+ NANT+I+++
Sbjct: 847 LEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ A +RL A+++ ELG GF++A +
Sbjct: 907 DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + +V +ID+ +
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGLKTVQKTDAEIDLGLEAY 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP++Y+ +E+ +A + + +E L ++G P + LL +++R
Sbjct: 1025 LPTDYVADSRQKIELYKRIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRF 1082
Query: 752 A 752
A
Sbjct: 1083 A 1083
>gi|422738809|ref|ZP_16793996.1| transcription-repair coupling factor [Enterococcus faecalis TX2141]
gi|315145387|gb|EFT89403.1| transcription-repair coupling factor [Enterococcus faecalis TX2141]
Length = 1189
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 501 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 558
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 559 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 614
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 615 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 673
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 674 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 732
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 733 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 792
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 793 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 852
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 853 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 912
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 913 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 972
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 973 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1031
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1032 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1088
>gi|257417623|ref|ZP_05594617.1| transcription-repair coupling factor [Enterococcus faecalis ARO1/DG]
gi|257159451|gb|EEU89411.1| transcription-repair coupling factor [Enterococcus faecalis ARO1/DG]
Length = 1179
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 242/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 491 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 548
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 549 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 604
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 605 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 663
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 664 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 722
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLLV+DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 723 GQVDIVIGTHRLLSQDINFSDLGLLVIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 782
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 783 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 842
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 843 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 902
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 903 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 962
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 963 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1021
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1022 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1078
>gi|225181416|ref|ZP_03734859.1| transcription-repair coupling factor [Dethiobacter alkaliphilus AHT
1]
gi|225167814|gb|EEG76622.1| transcription-repair coupling factor [Dethiobacter alkaliphilus AHT
1]
Length = 1177
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 254/620 (40%), Positives = 392/620 (63%), Gaps = 28/620 (4%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIK-FDV---QKDSTVPIEYVFIEYADGMAKL--PVKQ 203
D L+ GD+VVH++ GIG+++G++ DV Q+D Y++I+Y+ G KL P++Q
Sbjct: 500 DYQELQVGDFVVHEQHGIGQYLGLRTLDVGGTQRD------YLYIQYS-GNDKLYIPIEQ 552
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
+ R + E K+P+ +S L W R K + + ++Q++ +L+ LY R +
Sbjct: 553 ID--VVRKYIGVEGKKPK-MSALGGGE-WSRVKARVQASVQELAKELLALYAARETEPGH 608
Query: 264 PY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ P + +F A FPYE TPDQ +A +V++D+ E+ T DRL+CGDVG+GKTEVALR
Sbjct: 609 AFSPDHSWQKDFEAAFPYEETPDQLQAIAEVKQDM-EKSTVTDRLLCGDVGYGKTEVALR 667
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
F V KQA L PT VLA+QH+ ER +P + VG+LSRFQS AE++E + +
Sbjct: 668 GAFKAVMDDKQAAFLVPTTVLAQQHYHNFVERLEGFP-VNVGILSRFQSPAEQKETIKGL 726
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K G ++++VGTH +L + + +LG LVVDEEQRFGV+ KE+I K ++DVLT++ATPI
Sbjct: 727 KEGTIDLVVGTHRILSKDIRFRDLGFLVVDEEQRFGVRHKERIKMLKKNLDVLTMTATPI 786
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL+++L G RD S+I TPP +R PI+T++ +S + A+ EL+RGGQV++V R+
Sbjct: 787 PRTLHMSLVGVRDMSVIETPPEDRYPIQTYVLEYSDALIREAVMRELNRGGQVYFVHNRV 846
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + LQ+ P V +A+AHGQ +LE+ M F +G +L+ T IVE+GLDI N
Sbjct: 847 QSINRWAAKLQELMPEVRLAVAHGQMPEDRLEKVMMGFLEGEYDVLLSTTIVEAGLDIPN 906
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NTII+QD +FGLAQLYQLRGRVGR+++ A+AYL Y +L++ A +RL A++E EL
Sbjct: 907 VNTIIIQDADKFGLAQLYQLRGRVGRSNRIAYAYLTYQKDKVLTEVAEKRLQAIKEFTEL 966
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G +Q G + VG DL+ ++L +++ K E P
Sbjct: 967 GSGFKIAMRDLEIRGAGNILGPEQHGFMMAVGFDLYVKLLEDAIRTYKGQEEDTRQEP-- 1024
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
+I+I + LP+ YI+ + ++V + AA + + +++ E L +YG P + E
Sbjct: 1025 --RIEIQADAYLPASYIS--DARQKIVFYQKVAAVESVEQVLEAKEELCDRYGPLPAAAE 1080
Query: 741 ILLKKLYVRRMAADIGITKI 760
LL +V+ +A ++ ++ +
Sbjct: 1081 NLLNVAHVKLLARELYVSSV 1100
>gi|395802774|ref|ZP_10482026.1| transcription-repair coupling factor [Flavobacterium sp. F52]
gi|395435215|gb|EJG01157.1| transcription-repair coupling factor [Flavobacterium sp. F52]
Length = 1121
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 246/630 (39%), Positives = 373/630 (59%), Gaps = 24/630 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
+L GDYV H GIGKF G+ K V+ + I+ V YAD + + +Y
Sbjct: 437 ALSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLV---YADNDIVYVSIHSLHKISKY 493
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
N + T P + KL + AW+ K K K ++ + +L++LY R +K + P +
Sbjct: 494 NGKDGT--PPKIYKLG-SNAWKVLKQKTKARVKHIAFNLIQLYAKRRLEKGFQFAPDSYL 550
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E + F YE TPDQ K+ +V+ D+ E + PMDRL+CGDVGFGKTEVA+RA F V
Sbjct: 551 QNELESSFIYEDTPDQMKSTAEVKADM-ESDRPMDRLVCGDVGFGKTEVAIRAAFKAVDN 609
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
KQ VL PT +LA QH+ SER P + +G L+RF++ +K + L + G L+I+
Sbjct: 610 SKQVAVLVPTTILAYQHYRTFSERLKDMP-VSIGYLNRFRTAKQKAQTLKDLAEGKLDIV 668
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ VV+ +LGLL+VDEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L
Sbjct: 669 IGTHQLVNKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPIPRTLQFSL 728
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S+I+TPPP R PI+T++ F++E + AI YE+ R GQVF++ RI+ ++E
Sbjct: 729 MAARDLSVITTPPPNRYPIETNVVGFNEEIIRDAISYEIQRNGQVFFINNRIENIKEVAG 788
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P + I HGQ +LEE M F G +L+ T I+ESGLD+ NANTI + +
Sbjct: 789 MIQRLVPNARVGIGHGQMDGAKLEELMLGFMNGDFDVLVATTIIESGLDVPNANTIFINN 848
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A Y P S +++ A +R+ ALE+ ELG GF +A
Sbjct: 849 ANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSSMTEDARKRIQALEQFSELGSGFNIAM 908
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV----------DEHCVISVPY- 679
KD+ IRG G + G +Q+G + +G D + +++ E++ ++ +E+ + + Y
Sbjct: 909 KDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKELYPEENDIDTKEYV 968
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
K +QID + P EYIN++ + + NE +A +D L +F + L ++G P
Sbjct: 969 KDIQIDADFELLFPDEYINNVSERLVLYNEL--SAIKDEAGLQEFEKKLIDRFGPLPKQA 1026
Query: 740 EILLKKLYVRRMAADIGITK-IYASGKMVG 768
LL + ++ +A +GI K + GKM+G
Sbjct: 1027 VALLNSIRIKWIATKVGIEKLVLKQGKMIG 1056
>gi|423078394|ref|ZP_17067077.1| transcription-repair coupling factor [Lactobacillus rhamnosus ATCC
21052]
gi|357551251|gb|EHJ33045.1| transcription-repair coupling factor [Lactobacillus rhamnosus ATCC
21052]
Length = 1182
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 240/601 (39%), Positives = 378/601 (62%), Gaps = 14/601 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++ G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 502 LKPGDYVVHVNHGIGQYTGME-TLEVDG-VHRDYITIVYRNNDKLFIPVDQLN-LVQKY- 557
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ + K P ++KL T W++ K K I+ + +L++LY R +K + P +
Sbjct: 558 VSADGKTP-NVNKLG-GTEWQKTKRKVAARIEDIADELIDLYAKREAEKGYAFGPDDDLQ 615
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F +FPY TPDQ ++ +++RD+ E+ PMDRL+ GDVGFGKTEVALRA F V G
Sbjct: 616 QKFEDEFPYPETPDQLRSAKEIKRDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYG 674
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT +LA+QHFD + +RF+ +P +K+GLLSRFQ+ + + + +K+G ++I+V
Sbjct: 675 KQVAILVPTTILAQQHFDTMKDRFADFP-VKIGLLSRFQTPHQNKMTIKGLKNGTIDIVV 733
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++
Sbjct: 734 GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 793
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T + + + AI+ E++RGGQVFY+ R++ +E +
Sbjct: 794 GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 853
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P I AHGQ QLE + F GA +L+ T I+E+G+D+ NANT+I+++
Sbjct: 854 LEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 913
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ A +RL A+++ ELG GF++A +
Sbjct: 914 DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 973
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + +V +ID+ +
Sbjct: 974 DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGLKTVQKTDAEIDLGLEAY 1031
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP++Y+ +E+ +A + + +E L ++G P + LL +++R
Sbjct: 1032 LPTDYVADSRQKIELYKRIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRF 1089
Query: 752 A 752
A
Sbjct: 1090 A 1090
>gi|333896011|ref|YP_004469885.1| transcription-repair coupling factor [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111276|gb|AEF16213.1| transcription-repair coupling factor [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 1166
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 254/648 (39%), Positives = 396/648 (61%), Gaps = 17/648 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L G YVVH GIGK+ GI+ + D V +Y+ I+YA D +PV+Q ++ +Y
Sbjct: 500 LTVGSYVVHVNYGIGKYEGIE-KITVDG-VTKDYLKIKYAGDDKLFVPVEQLD-LVQKYI 556
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAI 271
P + +P L+KL ++ W + K + K A++ + DL++LY R K + K+ P
Sbjct: 557 GPED--KPPKLNKLG-SSDWSKLKKRAKKAVEDIAKDLIKLYAKRQTMKGYAFSKDTPWQ 613
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F +FPYE T DQ + ++++D+ E + PMDRL+CGDVG+GKTEVALRA F V+ G
Sbjct: 614 KDFEEKFPYEETEDQLRCIEEIKKDM-ESDKPMDRLLCGDVGYGKTEVALRAAFKAVADG 672
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ +RF +P +K+ +LSRF+S E+ + + M+ G ++I+V
Sbjct: 673 KQVAFLCPTTILAEQHYNNFVQRFKDFP-VKIEMLSRFRSNKEQSQIIKMVADGTVDILV 731
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + V + +LGLL++DEEQRFGVK KEKI K ++DVL+LSATPIPRTL+++L
Sbjct: 732 GTHKILQNDVKFKDLGLLIIDEEQRFGVKHKEKIKKLKENIDVLSLSATPIPRTLHMSLI 791
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ PP +R P++T++ F+++ + AI EL RGGQV++V RI G+E
Sbjct: 792 GIRDMSVLENPPEDRYPVQTYVVEFNEDLIRDAILRELGRGGQVYFVYNRIDGIERIASI 851
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P IA+AHGQ +LE+ M F IL+CT I+E+GLDI N NTIIV D
Sbjct: 852 LKELVPEARIAVAHGQMDEGKLEDIMIGFLNREYDILVCTTIIETGLDIPNVNTIIVYDS 911
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y ++S+ A +RL A++E E G GF++A +
Sbjct: 912 DKMGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVISEVAEKRLEAIKEFTEFGSGFKIAMR 971
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G +Q G + VG D++ +L E++ + P + IDI ++
Sbjct: 972 DLEIRGAGNLLGAEQHGHIDAVGYDMYLRLLDEAIKNLKGVSEEDKP--NTAIDIKVSAY 1029
Query: 692 LPSEYINHLENPMEMVNEAEKAA-EQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+ EYI +E+ + E+D+ + L ++ + P ++E L+ Y++
Sbjct: 1030 IDKEYIEDENQRLEIYKKISSIENEKDVE---DIKDELIDRFKEYPKAVEALIDVAYLKA 1086
Query: 751 MAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG 798
+A D I +I G V +K NK + ++D++ +E + + F G
Sbjct: 1087 LARDANILEITERGNSVILKFKDNKSINSSIVDALVNE-FKGKIMFSG 1133
>gi|319648579|ref|ZP_08002793.1| mfd protein [Bacillus sp. BT1B_CT2]
gi|423680448|ref|ZP_17655287.1| transcription-repair coupling factor [Bacillus licheniformis WX-02]
gi|317389346|gb|EFV70159.1| mfd protein [Bacillus sp. BT1B_CT2]
gi|383441554|gb|EID49263.1| transcription-repair coupling factor [Bacillus licheniformis WX-02]
Length = 1177
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 251/644 (38%), Positives = 391/644 (60%), Gaps = 27/644 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + + +Y+ I Y G KL PV Q
Sbjct: 493 RIKSYSELQIGDYVVHVNHGIGKYLGI--ETLEINGIHKDYLNIHYQ-GSDKLYVPVDQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLG-GSEWKRVKKKVESSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + EF A FPY+ T DQ ++ +++RD+ E+E PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQREFEAAFPYQETEDQLRSIHEIKRDM-EKERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIADGKQVAILVPTTILAQQHYETILERFQDYP-INIGLLSRFRTRKEANETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKRIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E + + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKAEEISMLVPDAKVTYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + ++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEARKGDAPQAEKFEP-E 1022
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ ++ +P Y+ + ++M A I + + + ++G+ P +E L
Sbjct: 1023 IDLELDAYIPQTYVTDGKQKIDMYKRFR--AISTIEEKSELQDEMIDRFGEYPKEVEYLF 1080
Query: 744 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTS 787
I K+YA + V + +K ++ ID S
Sbjct: 1081 A----------IAEAKVYAIKERVEL-IKQDKDAVRLTIDEKAS 1113
>gi|257783934|ref|YP_003179151.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469]
gi|257472441|gb|ACV50560.1| transcription-repair coupling factor [Atopobium parvulum DSM 20469]
Length = 1147
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 247/634 (38%), Positives = 390/634 (61%), Gaps = 28/634 (4%)
Query: 146 SYKVDP----YSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLP 200
S ++DP + + GDYVVH GI F I Q+ + +Y +EYA D +P
Sbjct: 472 SKRIDPTTVTFPFKPGDYVVHATHGIAHFTAIVR--QEVAGRERDYFLLEYANDDKLYVP 529
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
++Q R + RY P+ PR L++L +T W R K + + +K+ DL++LY R
Sbjct: 530 LEQVDR-ITRYVGPD-GNNPR-LTRL-NTADWSRATNKARKSAKKLAFDLVDLYTRR--A 583
Query: 261 KRPPYP---KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKT 317
P Y PA E + FPY+ TPDQ+ A D++ D+ R+ PMDRL+CGDVGFGKT
Sbjct: 584 SVPGYAFSLDTPAQEEMESSFPYQLTPDQESAVADIKLDMEARK-PMDRLLCGDVGFGKT 642
Query: 318 EVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEE 377
EVALRA F +Q M+L PT +LA+QH++ RF+ + D+KV +LSRF + A++ +
Sbjct: 643 EVALRAAFKACQDARQVMILCPTTILAQQHYETFFSRFAPF-DLKVSVLSRFVTPAQQRK 701
Query: 378 HLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTL 437
L+ G ++++VGTH LL + V ++LGL+++DEEQRFGV+ KE++ + + VDVLTL
Sbjct: 702 ALEGFADGTIDVLVGTHRLLSADVNPHDLGLVIIDEEQRFGVQHKEQLKNMREQVDVLTL 761
Query: 438 SATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFY 497
SATPIPRT+ +A++G RD SLI TPPP R P++ + ++ + V +AI+ EL+R GQV+Y
Sbjct: 762 SATPIPRTMQMAMSGVRDMSLILTPPPGRKPVQVTVGEYNPDLVSAAIRSELEREGQVYY 821
Query: 498 VLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 557
V R+ ++E + +++A P + +AHGQ +R++E M F + I +L+ T I+ESG
Sbjct: 822 VSNRVTTIDEAVARVEEAAPEARVGVAHGQMSAREVENVMLAFQEHEIDVLVATTIIESG 881
Query: 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALE 617
+D + NT+I++D Q+ GLAQLYQL+GRVGR ++A+AY +P + L+++A ERL A+
Sbjct: 882 IDNSHTNTLIIEDSQRLGLAQLYQLKGRVGRGRQQAYAYFMFPAELPLTEEATERLTAIN 941
Query: 618 ECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV 677
E ++LG G ++A +D+ IRG G++ G +Q G++ +VG DLF +ML E++++ S
Sbjct: 942 EFQDLGSGMRIAMRDLEIRGAGSLMGAEQHGNLSSVGFDLFTQMLGEAVAEARGE---SA 998
Query: 678 PYKSVQIDININPR--LPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYGK 734
+ ++ IN+ L +Y+ ++ + + A E DI L Q TE+ +G
Sbjct: 999 ELEQTEVTINLPADFFLDEDYLPEVDRRVLVYRRLAAATELSDIDALQQDTEN---SFGA 1055
Query: 735 EPYSMEILLKKLYVRRMAADIGITKI-YASGKMV 767
P + + L + VR A +G T + +G++V
Sbjct: 1056 LPLAGKNLFDRARVRIRAQRLGATSVSLTNGRLV 1089
>gi|392391785|ref|YP_006428387.1| transcription-repair coupling factor Mfd [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390522863|gb|AFL98593.1| transcription-repair coupling factor Mfd [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 1197
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 250/611 (40%), Positives = 376/611 (61%), Gaps = 23/611 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+SGD+VVH GIG+F+GI + V V +Y ++YA G KL V L +
Sbjct: 523 LKSGDFVVHVHHGIGQFIGIERISV---GGVDKDYFSVKYA-GQDKLYVPLDQLNLLQKY 578
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
L ++ + L KL + W++ K+K K AI++M DL++LY R K + P N
Sbjct: 579 LGSDAETLPKLYKLGGSE-WKKVKSKAKSAIKEMAFDLVKLYAQREATKGYAFSPDNVWQ 637
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF +FPY+ TPDQ + ++V++D+ R+ PMDRL+CGDVG+GKTEVALRA F V
Sbjct: 638 QEFEEKFPYQETPDQMQCIIEVKQDMM-RQRPMDRLLCGDVGYGKTEVALRAAFKAVMDS 696
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
+Q VL PT +LA+QHF+ ERF YP + + +LSRF+S E++ L +K G ++I+V
Sbjct: 697 RQVAVLVPTTILAQQHFNTFQERFMGYP-VSIQMLSRFRSAKEQKLILQGLKEGSIDIVV 755
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH L+ V + LGLL+VDEEQRFGV KEK+ + K +VDVLTLSATPIPRTL+++L
Sbjct: 756 GTHKLVADSVKFKELGLLIVDEEQRFGVAHKEKLKTLKTNVDVLTLSATPIPRTLHMSLV 815
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP +R P++T+++ F + V AI+ E+ RGGQVF+V R++ +E+ + F
Sbjct: 816 GVRDLSVIETPPEDRFPVQTYVAEFRPDVVREAIRREIQRGGQVFFVHNRVEDMEQVVHF 875
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L Q P IAHGQ ++LE+ M F + +L+CT I+E+GLD+ N NT+I+ +
Sbjct: 876 LSQLVPEARYGIAHGQMSEKELEQEMLAFLEHESDVLVCTTIIETGLDMPNVNTLIIDEA 935
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL QLYQLRGRVGR+++ A++Y Y + +L++ A +RLAA+ E E G G ++A +
Sbjct: 936 DRLGLGQLYQLRGRVGRSNRRAYSYFLYKPQKVLTEVAEKRLAAIREFTEFGSGLKIAMR 995
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL-----SKVDEHCVISVPYKSVQIDI 686
D+ IRG G + G QQ G + +G +L+ +ML E++ KV+E S I++
Sbjct: 996 DLEIRGAGNLIGAQQHGHLAALGFELYSQMLKEAVQEIKGEKVEEKIETS-------IEV 1048
Query: 687 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
++ LP YI + + ++ LM + L ++G P +E LLK +
Sbjct: 1049 QVDAYLPDIYIGERQLKAALYQRMVSIDNEEDLSLM--IDELIDRFGTPPREVENLLKIV 1106
Query: 747 YVRRMAADIGI 757
++ +A+ + I
Sbjct: 1107 RIKWIASRMKI 1117
>gi|257078484|ref|ZP_05572845.1| transcription-repair coupling factor [Enterococcus faecalis JH1]
gi|256986514|gb|EEU73816.1| transcription-repair coupling factor [Enterococcus faecalis JH1]
Length = 1179
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 491 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 548
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 549 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 604
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 605 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 663
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 664 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 722
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 723 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 782
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 783 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 842
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 843 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 902
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 903 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 962
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 963 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1021
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1022 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1078
>gi|255974757|ref|ZP_05425343.1| transcription-repair coupling factor [Enterococcus faecalis T2]
gi|255967629|gb|EET98251.1| transcription-repair coupling factor [Enterococcus faecalis T2]
Length = 1179
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 491 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 548
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 549 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 604
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 605 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 663
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 664 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 722
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 723 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 782
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 783 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 842
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 843 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 902
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 903 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 962
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 963 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1021
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1022 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1078
>gi|387928175|ref|ZP_10130853.1| transcription-repair coupling factor [Bacillus methanolicus PB1]
gi|387587761|gb|EIJ80083.1| transcription-repair coupling factor [Bacillus methanolicus PB1]
Length = 1176
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 248/629 (39%), Positives = 388/629 (61%), Gaps = 30/629 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS LR GDYVVH GIGK++GI + + + V +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELRVGDYVVHVNHGIGKYLGI--ETLEINGVHKDYLHIRY-QGNDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
++ +Y + +E K P+ + KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 D-LVQKY-VGSEGKEPK-IYKLGGSD-WKRVKNKVQSSVQNIADDLIKLYAEREAAKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P EF A FPY+ T DQ ++ +++RD+ ER+ PMDRL+CGDVG+GKTEVALRA
Sbjct: 606 FSPDGDMQREFEAAFPYQETEDQLRSIHEIKRDM-ERDRPMDRLLCGDVGYGKTEVALRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ L PT +LA+QH++ + ERF YP IK+GLLSRF+++ ++ L +K
Sbjct: 665 AFKAIADGKQVAFLVPTTILAQQHYETMKERFQDYP-IKIGLLSRFRTRKQQTGTLKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++++VGTH LL V++ +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIP
Sbjct: 724 DGTIDLVVGTHRLLSKDVIFRDLGLLIIDEEQRFGVAHKEKIKQLKTNIDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGGLVREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E + + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKAEEISMLVPDARVVYAHGKMSENELESVMLTFIEGEADVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVHDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYK-SV 682
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML E++ + + P + +
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKEAIEERKGNN--EQPKRPQL 1021
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
+ID+ ++ +P YI +EM + D + + E + ++G+ P + L
Sbjct: 1022 EIDLEVDAYIPDSYIADGHQKIEMYKRFRAISSLD--DIEELQEEMIDRFGEYPDEVAYL 1079
Query: 743 LKKLYVRRMAADIGITKIYASGKMVGMKT 771
+ I K+Y G++ G++T
Sbjct: 1080 FQ----------IAEMKVY--GQLAGVET 1096
>gi|256956814|ref|ZP_05560985.1| transcription-repair coupling factor [Enterococcus faecalis DS5]
gi|256960620|ref|ZP_05564791.1| transcription-repair coupling factor [Enterococcus faecalis Merz96]
gi|257081545|ref|ZP_05575906.1| transcription-repair coupling factor [Enterococcus faecalis E1Sol]
gi|294779317|ref|ZP_06744720.1| transcription-repair coupling factor [Enterococcus faecalis PC1.1]
gi|300861968|ref|ZP_07108048.1| transcription-repair coupling factor [Enterococcus faecalis TUSoD
Ef11]
gi|428765878|ref|YP_007151989.1| transcription-repair-coupling factor [Enterococcus faecalis str.
Symbioflor 1]
gi|256947310|gb|EEU63942.1| transcription-repair coupling factor [Enterococcus faecalis DS5]
gi|256951116|gb|EEU67748.1| transcription-repair coupling factor [Enterococcus faecalis Merz96]
gi|256989575|gb|EEU76877.1| transcription-repair coupling factor [Enterococcus faecalis E1Sol]
gi|294453603|gb|EFG22002.1| transcription-repair coupling factor [Enterococcus faecalis PC1.1]
gi|300848493|gb|EFK76250.1| transcription-repair coupling factor [Enterococcus faecalis TUSoD
Ef11]
gi|427184051|emb|CCO71275.1| transcription-repair-coupling factor [Enterococcus faecalis str.
Symbioflor 1]
Length = 1179
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 491 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 548
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 549 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 604
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 605 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 663
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 664 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 722
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 723 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 782
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 783 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 842
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 843 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 902
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 903 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 962
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 963 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1021
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1022 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1078
>gi|332878210|ref|ZP_08445938.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332683822|gb|EGJ56691.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 1104
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 244/628 (38%), Positives = 373/628 (59%), Gaps = 24/628 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYV H GIGKF G+ K +V+ I+ + Y D A + +YN
Sbjct: 423 LEVGDYVTHIDHGIGKFAGLQKIEVEGKQQEAIKLI---YGDRDVLFVSIHALHKITKYN 479
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ +P + KL + AW+ K K K ++++ +L++LY R + + + + +
Sbjct: 480 --GKDGKPPKIYKLG-SGAWKALKQKTKARVKEIAFNLIQLYAKRKEAQGYAFAHDSYMQ 536
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E A F YE TPDQ KA +V+ D+ E PMDRL+CGDVGFGKTEVA+RA F V G
Sbjct: 537 NELEASFLYEDTPDQSKATAEVKADM-ESAKPMDRLVCGDVGFGKTEVAIRAAFKAVDNG 595
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT VLA QH+ S+R +P +++ L+RF++ EK+ L+ + G L+I++
Sbjct: 596 KQVAVLVPTTVLAFQHYQTFSQRMKDFP-VRIDYLNRFRTAKEKKIILEELAKGQLDIVI 654
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH ++G +V Y +LGLL+VDEEQ+FGV K+K+ + K ++DVLTL+ATPIPRTL +L
Sbjct: 655 GTHQIVGEKVQYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLM 714
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD S+I+TPPP R PI + + FS+E + I+YE+ RGGQVF++ R++ ++E
Sbjct: 715 AARDLSVINTPPPNRYPIDSQVIPFSEEVIRDGIRYEIQRGGQVFFMHNRVENIQEVAGM 774
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P IAI HGQ ++LEETM F +GA +L+ T I+ESGLD+ NANTI + +
Sbjct: 775 IQRLLPDARIAIGHGQMDGKKLEETMLAFMEGAYDVLVATTIIESGLDVPNANTIFINNA 834
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+ L+Q+RGRVGR++K+A Y P +SD A +R+ A+ + +LG G +A K
Sbjct: 835 HNFGLSDLHQMRGRVGRSNKKAFCYFITPPLIAMSDDARKRIEAIAQFSDLGSGLNIAMK 894
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS---------- 681
D+ IRG G + G +Q+G + +G D + ++L E+++++ E+ S Y++
Sbjct: 895 DLEIRGAGDLLGGEQSGFINEIGFDTYQKILQEAITELKENE-FSELYRTAEEDKTYLTD 953
Query: 682 VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
QID + P Y+N + + + NE ++ L + +L ++GK P
Sbjct: 954 TQIDTDFELLFPDTYVNRVAERLNLYNELSNLTNEE--ALQVYQRNLIDRFGKLPPQAID 1011
Query: 742 LLKKLYVRRMAADIGITK-IYASGKMVG 768
LL + V+ +A +GI K + +GKM G
Sbjct: 1012 LLNSVRVKWLATRMGIEKLVMKNGKMTG 1039
>gi|229546913|ref|ZP_04435638.1| transcription-repair coupling factor [Enterococcus faecalis TX1322]
gi|312952657|ref|ZP_07771521.1| transcription-repair coupling factor [Enterococcus faecalis TX0102]
gi|422691668|ref|ZP_16749697.1| transcription-repair coupling factor [Enterococcus faecalis TX0031]
gi|422706366|ref|ZP_16764067.1| transcription-repair coupling factor [Enterococcus faecalis TX0043]
gi|229307841|gb|EEN73828.1| transcription-repair coupling factor [Enterococcus faecalis TX1322]
gi|310629445|gb|EFQ12728.1| transcription-repair coupling factor [Enterococcus faecalis TX0102]
gi|315153559|gb|EFT97575.1| transcription-repair coupling factor [Enterococcus faecalis TX0031]
gi|315156261|gb|EFU00278.1| transcription-repair coupling factor [Enterococcus faecalis TX0043]
Length = 1189
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 501 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 558
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 559 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 614
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 615 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 673
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 674 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 732
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 733 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 792
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 793 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 852
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 853 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 912
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 913 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 972
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 973 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1031
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1032 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1088
>gi|403743477|ref|ZP_10953061.1| transcription-repair coupling factor [Alicyclobacillus hesperidum
URH17-3-68]
gi|403122721|gb|EJY56920.1| transcription-repair coupling factor [Alicyclobacillus hesperidum
URH17-3-68]
Length = 1176
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 242/622 (38%), Positives = 376/622 (60%), Gaps = 20/622 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRY 211
L GDYVVH GIGK++GIK +V+ +Y+++ YA + +PV Q + + RY
Sbjct: 496 LNVGDYVVHVNHGIGKYMGIKTLEVEGRHN---DYLYLSYAGNDSLYVPVDQIDQ-IQRY 551
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PKN 268
E K P+ L L + W++ K + ++ + DL++LY R + P + P
Sbjct: 552 IGSGE-KEPK-LHHLG-SGEWQKVKNRVSKTVKDIAADLVKLYAQR--EATPGHAFSPDT 606
Query: 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328
P +F FPYE TPDQ +A D++RD+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 607 PWQVDFENMFPYEETPDQLRAIADIKRDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAV 665
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 388
GKQ VL PT VLA+QH++ ERF+ +P + + +LSRF+S+ + + + +K G ++
Sbjct: 666 MDGKQVAVLVPTTVLAQQHYETFKERFAGFP-VTIDMLSRFRSRKDSQACIKGLKDGTVD 724
Query: 389 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 448
+++GTH LL + + +LGLL+VDEEQRFGV KE++ + +VD LTL+ATPIPRTL++
Sbjct: 725 VVIGTHRLLQKSIQFKDLGLLIVDEEQRFGVTHKERLKQLRANVDCLTLTATPIPRTLHM 784
Query: 449 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 508
++ G RD S+I TPP R P++T++ +++ + A++ EL RGGQV++V ++ +
Sbjct: 785 SMMGVRDLSVIETPPENRFPVQTYVVEYNEGLIREALERELGRGGQVYFVYNQVHNIHRM 844
Query: 509 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 568
+ +Q+ P + +AHGQ +LE M F +G I IL+ T I+E+GLDI N NT+IV
Sbjct: 845 AERVQEMAPDARVTVAHGQMQEAELERVMLDFLEGEIDILVTTTIIETGLDISNVNTLIV 904
Query: 569 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 628
D +FGL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL+A++E ELG GF++
Sbjct: 905 YDADKFGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLSAIKEFTELGSGFKI 964
Query: 629 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDINI 688
A +D+ IRG G + G +Q G + +VG D++ EML +++ ++ V S ID+ +
Sbjct: 965 AMRDLSIRGAGNLLGAEQHGFINSVGFDMYTEMLAQAVRELRGEQVEQGVEPS--IDLPV 1022
Query: 689 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+P YI+ + M A Q + E L +YG P + LL +
Sbjct: 1023 EAYIPDTYISDSAQKIAMYKRFR--AVQTLMEADDLEEELEDRYGDLPTEVRNLLNVTRL 1080
Query: 749 RRMAADIGITKIYASGKMVGMK 770
+ +AA G+ +I G ++
Sbjct: 1081 KSLAASAGVDQISVHGAETAIR 1102
>gi|227520043|ref|ZP_03950092.1| transcription-repair coupling factor [Enterococcus faecalis TX0104]
gi|424678904|ref|ZP_18115742.1| transcription-repair coupling factor [Enterococcus faecalis ERV103]
gi|424679717|ref|ZP_18116531.1| transcription-repair coupling factor [Enterococcus faecalis ERV116]
gi|424684124|ref|ZP_18120850.1| transcription-repair coupling factor [Enterococcus faecalis ERV129]
gi|424688435|ref|ZP_18125041.1| transcription-repair coupling factor [Enterococcus faecalis ERV25]
gi|424691551|ref|ZP_18128074.1| transcription-repair coupling factor [Enterococcus faecalis ERV31]
gi|424695121|ref|ZP_18131505.1| transcription-repair coupling factor [Enterococcus faecalis ERV37]
gi|424696489|ref|ZP_18132834.1| transcription-repair coupling factor [Enterococcus faecalis ERV41]
gi|424701879|ref|ZP_18138045.1| transcription-repair coupling factor [Enterococcus faecalis ERV62]
gi|424704935|ref|ZP_18141021.1| transcription-repair coupling factor [Enterococcus faecalis ERV63]
gi|424706360|ref|ZP_18142367.1| transcription-repair coupling factor [Enterococcus faecalis ERV65]
gi|424719051|ref|ZP_18148279.1| transcription-repair coupling factor [Enterococcus faecalis ERV68]
gi|424719971|ref|ZP_18149097.1| transcription-repair coupling factor [Enterococcus faecalis ERV72]
gi|424733455|ref|ZP_18162015.1| transcription-repair coupling factor [Enterococcus faecalis ERV81]
gi|424735225|ref|ZP_18163695.1| transcription-repair coupling factor [Enterococcus faecalis ERV85]
gi|424754569|ref|ZP_18182478.1| transcription-repair coupling factor [Enterococcus faecalis ERV93]
gi|227072591|gb|EEI10554.1| transcription-repair coupling factor [Enterococcus faecalis TX0104]
gi|402350607|gb|EJU85509.1| transcription-repair coupling factor [Enterococcus faecalis ERV103]
gi|402355672|gb|EJU90434.1| transcription-repair coupling factor [Enterococcus faecalis ERV116]
gi|402360879|gb|EJU95473.1| transcription-repair coupling factor [Enterococcus faecalis ERV25]
gi|402362106|gb|EJU96646.1| transcription-repair coupling factor [Enterococcus faecalis ERV31]
gi|402362681|gb|EJU97199.1| transcription-repair coupling factor [Enterococcus faecalis ERV129]
gi|402368968|gb|EJV03267.1| transcription-repair coupling factor [Enterococcus faecalis ERV37]
gi|402370843|gb|EJV05032.1| transcription-repair coupling factor [Enterococcus faecalis ERV62]
gi|402377531|gb|EJV11429.1| transcription-repair coupling factor [Enterococcus faecalis ERV41]
gi|402380127|gb|EJV13896.1| transcription-repair coupling factor [Enterococcus faecalis ERV68]
gi|402380545|gb|EJV14295.1| transcription-repair coupling factor [Enterococcus faecalis ERV63]
gi|402388168|gb|EJV21617.1| transcription-repair coupling factor [Enterococcus faecalis ERV65]
gi|402391823|gb|EJV25103.1| transcription-repair coupling factor [Enterococcus faecalis ERV81]
gi|402394934|gb|EJV28081.1| transcription-repair coupling factor [Enterococcus faecalis ERV72]
gi|402403018|gb|EJV35710.1| transcription-repair coupling factor [Enterococcus faecalis ERV93]
gi|402404115|gb|EJV36746.1| transcription-repair coupling factor [Enterococcus faecalis ERV85]
Length = 1189
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 501 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 558
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 559 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 614
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 615 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 673
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 674 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 732
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 733 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 792
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 793 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 852
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 853 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 912
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 913 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 972
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 973 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1031
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1032 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1088
>gi|210623288|ref|ZP_03293705.1| hypothetical protein CLOHIR_01655 [Clostridium hiranonis DSM 13275]
gi|210153689|gb|EEA84695.1| hypothetical protein CLOHIR_01655 [Clostridium hiranonis DSM 13275]
Length = 1147
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 249/637 (39%), Positives = 390/637 (61%), Gaps = 23/637 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQAS 205
K+D + L GDYVVH+ GIG+++GI D + +Y+ I Y DG +P+ Q
Sbjct: 487 KIDSFLDLNPGDYVVHENSGIGRYIGI--DQITVDGIKKDYMKIVYRDGDNLYVPIDQMD 544
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
+ + +Y + E ++ + LS+L T W + K K + I+ M +L+ LY R K K +
Sbjct: 545 K-VQKY-IGAEAEKVK-LSRLG-TQEWTKAKAKVRKEIEDMTEELINLYAKREKIKGYKF 600
Query: 266 PKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETP--MDRLICGDVGFGKTEVALR 322
K+ EF +FPY+ T DQ KA D ++D+ E+P MDRLICGDVG+GKTEVA+R
Sbjct: 601 SKDTVWQKEFEDKFPYQETDDQLKAIKDTKKDM---ESPRVMDRLICGDVGYGKTEVAIR 657
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F GKQ VL PT +LA+QH++ SERF+ YP I+V +LSRF++ ++++ ++
Sbjct: 658 AAFKACMDGKQVAVLVPTTILAQQHYNTFSERFADYP-IRVEVLSRFKTPKQQKKIIEDA 716
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K G +++++GTH ++ + LGL+V+DEEQRFGVK KE + K +VDVLTLSATPI
Sbjct: 717 KKGMVDVLIGTHRIISKDIELPKLGLVVIDEEQRFGVKHKETLKKVKNTVDVLTLSATPI 776
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL+++L+G RD ++I PP ER P+ T+++ + I+ E+ RGGQVF+V R+
Sbjct: 777 PRTLHMSLSGIRDMTVIEEPPQERHPVITYVTEARDSIIQDEIEKEISRGGQVFFVYNRV 836
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+G+E D +++ P +A+AHG+ S+ LE+ + F Q +L+CT I+E+G+DI N
Sbjct: 837 EGIEGIADKVRKLVPDARVAVAHGRMSSKTLEDIIIAFMQKEFDVLVCTTIIETGMDIAN 896
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
ANT+I+ D + GLAQLYQLRGRVGR+ ++ +A+L Y LS+ A +RL A++E E
Sbjct: 897 ANTMIIYDADKMGLAQLYQLRGRVGRSTRQGYAFLMYERNKSLSEIAEKRLKAIKEFTEF 956
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKS 681
G GF++A +D+ IRG G + G QQ G + +G DL+ +ML E++ K+ E ++ V
Sbjct: 957 GSGFKIAMRDLEIRGAGDVLGAQQHGHMAVIGYDLYVKMLNEAIRKIKGEPEIVEV---D 1013
Query: 682 VQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+ID+ ++ +P YI +EM + A +++D++ + E L ++ P +
Sbjct: 1014 VEIDLPVDAYIPDRYIEDEMAKIEMYKKIASIDSKEDMY---EVQEELEDRFSDIPRPTQ 1070
Query: 741 ILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKV 777
LL Y++ + + I K+Y V + M +V
Sbjct: 1071 TLLSIAYIKSLCKKLKIEKVYQIKNEVFLNPYMRYRV 1107
>gi|342733110|ref|YP_004771949.1| transcription-repair coupling factor [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|384456478|ref|YP_005669076.1| transcription-repair coupling factor [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417968852|ref|ZP_12609829.1| Transcription-repair coupling factor [Candidatus Arthromitus sp.
SFB-co]
gi|418015484|ref|ZP_12655049.1| transcription-repair coupling factor [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418373369|ref|ZP_12965458.1| Transcription-repair coupling factor [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342330565|dbj|BAK57207.1| transcription-repair coupling factor [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345505819|gb|EGX28113.1| transcription-repair coupling factor [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984824|dbj|BAK80500.1| transcription-repair coupling factor [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|380338857|gb|EIA27696.1| Transcription-repair coupling factor [Candidatus Arthromitus sp.
SFB-co]
gi|380341205|gb|EIA29698.1| Transcription-repair coupling factor [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 1169
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 254/618 (41%), Positives = 386/618 (62%), Gaps = 20/618 (3%)
Query: 152 YSLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRML 208
Y L+ GDY+VH GIG + GIK D Q + +Y+ IEY D KL P++Q ++
Sbjct: 498 YDLKPGDYIVHVNHGIGVYKGIKKIDFQ---GIERDYLDIEY-DKKDKLYVPIEQLD-LV 552
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
+Y + E K P+ ++KL + W + KTK + +I ++ +L++LY R K Y K+
Sbjct: 553 QKY-IGIEGKSPK-VNKLG-GSEWIKIKTKTRRSIDEIAYNLVKLYAKRNILKGYAYSKD 609
Query: 269 PAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
++F +FPY TPDQ A D+++D+ E + PMDRL+CGDVG+GKTEVALRA+F
Sbjct: 610 STWQSQFEQEFPYVETPDQLLAIEDIKKDM-ESDKPMDRLLCGDVGYGKTEVALRAMFKA 668
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V +Q + L PT +LA QH++ + +RF +P V +LSRF++ +++E L +K G +
Sbjct: 669 VVDKRQVVFLVPTTILADQHYNNIKKRFEGFP-FNVDVLSRFRTTKQQKETLSKLKLGEI 727
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+IIVGTH LL V + NLGLL++DEEQRFGVK KEKI K S+DVL+LSATPIPRTL+
Sbjct: 728 DIIVGTHRLLSKDVQFKNLGLLIIDEEQRFGVKHKEKIKEMKESIDVLSLSATPIPRTLH 787
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+++ G RD S+I TPP +R P++T + +S + V AI E+ R GQ F++ ++ +++
Sbjct: 788 MSMVGVRDISVIDTPPEDRYPVQTFVVEYSDQLVRGAIMKEISRCGQGFFLYNSVENIDK 847
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+LQ P ++ HGQ R++E+ + KF I L+CT I+E+G+DI+NANTII
Sbjct: 848 MNIYLQNLVPECRFSVIHGQMGEREIEDILIKFLNKDIDFLVCTTIIETGIDIKNANTII 907
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ + +FGL+QLYQLRGRVGR++K A+AYL Y +LS+ A +RL L++ ELG GF+
Sbjct: 908 IHNADKFGLSQLYQLRGRVGRSNKVAYAYLTYKKDRVLSEVAEKRLKTLKDFTELGSGFK 967
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDIN 687
+A KD+ IRG G + GE Q G + VG DL+ +ML E K+ + V V +V +DI
Sbjct: 968 VAMKDLEIRGSGNLIGESQHGQMSVVGYDLYCKML-EDAIKMLQGEVTCVEVNTV-VDIK 1025
Query: 688 INPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
I+ + YI E+ M+ + +K + +D + E L ++ P+ ++ L+K
Sbjct: 1026 IDVYIKDNYI---EDEMQKLEIYKKISCIEDKKDISYIKEELMDRFSVIPFEIDNLIKIS 1082
Query: 747 YVRRMAADIGITKIYASG 764
Y+R + +G ++I G
Sbjct: 1083 YIRALGKKLGFSQIKEIG 1100
>gi|257088697|ref|ZP_05583058.1| transcription-repair coupling factor [Enterococcus faecalis CH188]
gi|397698779|ref|YP_006536567.1| transcription-repair coupling factor [Enterococcus faecalis D32]
gi|256997509|gb|EEU84029.1| transcription-repair coupling factor [Enterococcus faecalis CH188]
gi|397335418|gb|AFO43090.1| transcription-repair coupling factor [Enterococcus faecalis D32]
Length = 1179
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 491 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 548
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 549 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 604
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 605 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 663
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 664 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 722
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 723 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 782
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 783 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 842
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 843 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 902
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 903 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 962
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 963 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1021
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1022 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1078
>gi|29374898|ref|NP_814051.1| transcription-repair coupling factor [Enterococcus faecalis V583]
gi|227555903|ref|ZP_03985950.1| transcription-repair coupling factor [Enterococcus faecalis HH22]
gi|422712941|ref|ZP_16769701.1| transcription-repair coupling factor [Enterococcus faecalis TX0309A]
gi|422718241|ref|ZP_16774912.1| transcription-repair coupling factor [Enterococcus faecalis TX0309B]
gi|29342356|gb|AAO80122.1| transcription-repair coupling factor [Enterococcus faecalis V583]
gi|227174960|gb|EEI55932.1| transcription-repair coupling factor [Enterococcus faecalis HH22]
gi|315573564|gb|EFU85755.1| transcription-repair coupling factor [Enterococcus faecalis TX0309B]
gi|315582088|gb|EFU94279.1| transcription-repair coupling factor [Enterococcus faecalis TX0309A]
Length = 1189
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 501 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 558
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 559 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 614
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 615 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 673
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 674 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 732
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 733 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 792
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 793 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 852
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 853 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 912
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 913 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 972
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 973 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1031
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1032 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1088
>gi|256964180|ref|ZP_05568351.1| transcription-repair coupling factor [Enterococcus faecalis HIP11704]
gi|256954676|gb|EEU71308.1| transcription-repair coupling factor [Enterococcus faecalis HIP11704]
Length = 1179
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 491 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 548
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 549 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 604
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 605 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 663
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 664 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 722
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 723 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 782
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 783 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 842
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 843 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 902
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 903 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 962
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 963 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1021
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1022 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1078
>gi|376284412|ref|YP_005157622.1| transcription-repair coupling factor [Corynebacterium diphtheriae
31A]
gi|371577927|gb|AEX41595.1| transcription-repair coupling factor [Corynebacterium diphtheriae
31A]
Length = 1232
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 257/706 (36%), Positives = 410/706 (58%), Gaps = 41/706 (5%)
Query: 147 YKVDPYSLRSGDYVVHKKVGIGKFVGIKFDV--QKDSTVPIEYVFIEYADGMAKLPVKQ- 203
++VDP +L++GDYVVH+ GIG+F+ + V D T EY+ +EYA P Q
Sbjct: 512 HRVDPLALKTGDYVVHETHGIGRFLKMTERVIQSGDETSRREYIVLEYAASKRGQPADQL 571
Query: 204 -----ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRL 258
+ ML +Y ++P TLSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 572 YVPMDSLDMLSKYV---GGEKP-TLSKMGGSD-WKNTKKKARAAVREIAGELVELYAKR- 625
Query: 259 KQKRPPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFG 315
Q P + P +P E FPY T DQ A V+ D+ E+ +PMDR++ GDVG+G
Sbjct: 626 -QSAPGHAFAPDSPWQHEMEDNFPYVETEDQMLAIDAVKADM-EKPSPMDRVVVGDVGYG 683
Query: 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 375
KTEVA+RA F V G+Q +VL PT +LA+QH ER + +P + + LSRF S +E
Sbjct: 684 KTEVAVRAAFKAVQDGRQVVVLVPTTLLAQQHLSTFEERMAGFP-VTIKGLSRFTSPSES 742
Query: 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVL 435
+E L + G ++I++GTH LL + V + NLGL++VDEEQRFGV+ KE I + + VDVL
Sbjct: 743 KEILKGLADGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVL 802
Query: 436 TLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQV 495
T+SATPIPRTL +++ G R+ S I TPP +R PI T++ A ++V +AI+ EL R GQV
Sbjct: 803 TMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQVAAAIRRELLRDGQV 862
Query: 496 FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555
FYV ++ +E+ L++ P I +AHGQ LE+T++ F +L+CT IVE
Sbjct: 863 FYVHNKVSDIEKKARELRELVPEARIVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVE 922
Query: 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA 615
+GLDI NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP + L++ + +RLA
Sbjct: 923 TGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTENSYDRLAT 982
Query: 616 LEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDE 671
+ + +LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D
Sbjct: 983 IAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADG 1042
Query: 672 HCVISVPY--KSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESL 728
+ K ++ID+ ++ +P +YIN +E+ + A A ++D+ ++ E +
Sbjct: 1043 KVADATEQGPKEIRIDLPVDAHIPEDYINSERLRLEVYRKLAASANDKDLALVV---EEM 1099
Query: 729 RRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMK----TNMNKKVFKMMIDS 784
+ ++G P+ ++ LL +R +A G++ I G + + T+ + K + S
Sbjct: 1100 KDRFGPVPHEVKRLLAVSRLRHLARATGLSDIGVQGTRIKLHPVELTDSKQVRLKRLAPS 1159
Query: 785 MTSEVHRNSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
T ++ EG ++ + L ++ +LL W+ +AE++
Sbjct: 1160 ATYRAAAKAIQLPFPKEGAKVTDKQLRDV---ELLQWVADFIAEMF 1202
>gi|229550502|ref|ZP_04439227.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
29200]
gi|307286964|ref|ZP_07567039.1| transcription-repair coupling factor [Enterococcus faecalis TX0109]
gi|307290197|ref|ZP_07570115.1| transcription-repair coupling factor [Enterococcus faecalis TX0411]
gi|422686433|ref|ZP_16744630.1| transcription-repair coupling factor [Enterococcus faecalis TX4000]
gi|422700060|ref|ZP_16757916.1| transcription-repair coupling factor [Enterococcus faecalis TX1342]
gi|422735114|ref|ZP_16791394.1| transcription-repair coupling factor [Enterococcus faecalis TX1341]
gi|229304359|gb|EEN70355.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
29200]
gi|306498753|gb|EFM68252.1| transcription-repair coupling factor [Enterococcus faecalis TX0411]
gi|306501910|gb|EFM71199.1| transcription-repair coupling factor [Enterococcus faecalis TX0109]
gi|315028825|gb|EFT40757.1| transcription-repair coupling factor [Enterococcus faecalis TX4000]
gi|315168150|gb|EFU12167.1| transcription-repair coupling factor [Enterococcus faecalis TX1341]
gi|315171410|gb|EFU15427.1| transcription-repair coupling factor [Enterococcus faecalis TX1342]
Length = 1189
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 501 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 558
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 559 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 614
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 615 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 673
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 674 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 732
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 733 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 792
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 793 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 852
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 853 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 912
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 913 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 972
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 973 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1031
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1032 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1088
>gi|224369910|ref|YP_002604074.1| hypothetical protein HRM2_28210 [Desulfobacterium autotrophicum HRM2]
gi|223692627|gb|ACN15910.1| Mfd [Desulfobacterium autotrophicum HRM2]
Length = 1165
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 250/618 (40%), Positives = 378/618 (61%), Gaps = 22/618 (3%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRM 207
+ P L+ GD VVH + G+G++ G+ K + +++ I + D LPV + M
Sbjct: 492 ITPEELKEGDIVVHLEHGLGRYEGLV--TLKLEGISGDFILISFRDDDRLYLPVDRME-M 548
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQK-----R 262
+ +Y + + P L K+ T W++ + K K ++KM +L++LY R K R
Sbjct: 549 VEKY-IGVDGYSP-ILDKIGGKT-WQKSRAKAKKEVEKMAGELLKLYAERRVAKGFAFSR 605
Query: 263 PPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
P + N +F A FP+E TPDQ KA DV D+ E E PMDRL+CGDVG+GKTEVA+R
Sbjct: 606 PDHFFN----DFEASFPFEETPDQLKAIDDVLVDM-ESERPMDRLVCGDVGYGKTEVAIR 660
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F V+ GKQ ++ PT +LA+QH ERF YP I V LSRF++K E+ + + +
Sbjct: 661 ATFKAVTDGKQVAIVVPTTILAEQHVHTFRERFGNYP-ITVESLSRFRTKGEQAKIVKDL 719
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
+ G L++++GTH LL + + +LGLLV+DEEQRFGVK KE + + SVDVL L+ATPI
Sbjct: 720 EQGKLDVVIGTHRLLQKDIAFKSLGLLVIDEEQRFGVKHKEALKKRRSSVDVLALTATPI 779
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL+++LTG RD S+ISTPP +R PI +++S + AI+ EL+RGGQ+F++ I
Sbjct: 780 PRTLHMSLTGMRDISIISTPPVDRQPIVSYISEYDDAIAAGAIQKELERGGQIFFIHNNI 839
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
K + + + L++ P V IA+AHG+ LE+ M +F I +L+CT IVESGLDI +
Sbjct: 840 KTIFKTAENLKKLVPEVRIAVAHGRLNEASLEKAMLQFINREIDMLVCTTIVESGLDIPS 899
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
ANT+I+ FGLAQ+YQLRGR+GR +++A+AYLF P++ L+ A +RLAAL E R+L
Sbjct: 900 ANTMIINRADMFGLAQIYQLRGRIGRGEEQAYAYLFVPEEHRLTRDAQKRLAALMEHRDL 959
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 682
G GFQ+A KD+ IRG G+ G Q+G V VG D+F ++L E+++ + + P +
Sbjct: 960 GSGFQIAMKDLQIRGAGSALGGSQSGHVAAVGYDMFLKLLDEAVADLKGQPLTD-PLEP- 1017
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
+I++ ++ + EY+ +E + + + MQ + L ++GK P +
Sbjct: 1018 EINVTLSTFISDEYVQSIEQRLTIYRRLSQMTTVKEVAAMQ--QELVDRFGKLPEEAGNM 1075
Query: 743 LKKLYVRRMAADIGITKI 760
L K+ +R + G+ K+
Sbjct: 1076 LLKIMLRVLCVKAGVKKL 1093
>gi|422875429|ref|ZP_16921914.1| transcription-repair coupling factor [Clostridium perfringens F262]
gi|380303609|gb|EIA15910.1| transcription-repair coupling factor [Clostridium perfringens F262]
Length = 1168
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 246/643 (38%), Positives = 397/643 (61%), Gaps = 20/643 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH GIG + GIK +VQ +Y+ IEY+ G +PV+Q ++ +Y
Sbjct: 501 LKPGDYVVHVNSGIGVYKGIKQIEVQGHKR---DYLDIEYSKGDKLYVPVEQLD-LVQKY 556
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +++ P+ +SKL W++ K K + +I + DL++LY R K + K+
Sbjct: 557 -IGSDSASPK-ISKLG-GNEWQKAKAKVRKSINDIAGDLVKLYAERSTVKGYKFSKDTQW 613
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FPYE TPDQ A D++ D+ E MDRL+CGDVG+GKTEVA+RA F V
Sbjct: 614 QKQFEDEFPYEETPDQLSAIEDIKSDM-ETNKVMDRLLCGDVGYGKTEVAIRAAFKAVME 672
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH+ + +RF+ +P I + ++SRF++K ++ E L +K G+++I+
Sbjct: 673 GKQVAFLVPTTILAEQHYKNMKKRFAGFP-ITIDMISRFRTKKQQTETLKALKEGNVDIL 731
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ + + +LGLL+VDEEQRFGV QKEKI SFK +VDVLTLSATPIPRTL+++L
Sbjct: 732 IGTHRLVSKDIQFKDLGLLIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSL 791
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG RD S+I TPP R PI+T++ + + + AI E++R GQV++V R++ ++E +
Sbjct: 792 TGVRDISVIETPPENRYPIQTYVVEQNDQLIRDAILREINRDGQVYFVHNRVESIQEVAN 851
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
++Q+ P + HGQ RQLE M F + +L+CT+I+E+G+DI N NT+IV D
Sbjct: 852 YIQELVPECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVND 911
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR++K A+AY Y +L++ A +RL AL++ ELG GF++A
Sbjct: 912 ADKMGLSQLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAM 971
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G Q G + +G DL+ ML +++ K+ + + P ++ +D+ ++
Sbjct: 972 RDLEIRGAGNMMGSAQHGHMAAIGYDLYCRMLEDTI-KIVKGEIEREPVETT-VDLKVDA 1029
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+PS YI +E+ + ++ + ++ E L ++ P ++ L+ Y++
Sbjct: 1030 FIPSSYIKDEIQKIEVYKKIAAIENEEDYEYVR--EELEDRFSNIPNTVYNLMDIAYIKS 1087
Query: 751 MAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEV 789
A + I +I + V + +K++FK++++ ++
Sbjct: 1088 KAKLLNIEEIKEKNEDVIFIFESRERTDKRIFKVLLEEYKDDI 1130
>gi|256762052|ref|ZP_05502632.1| transcription-repair coupling factor [Enterococcus faecalis T3]
gi|256683303|gb|EEU22998.1| transcription-repair coupling factor [Enterococcus faecalis T3]
Length = 1179
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 491 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 548
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 549 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 604
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 605 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 663
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 664 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 722
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 723 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 782
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 783 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 842
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 843 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 902
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 903 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 962
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 963 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1021
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1022 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1078
>gi|376253980|ref|YP_005142439.1| transcription-repair coupling factor [Corynebacterium diphtheriae
PW8]
gi|372117064|gb|AEX69534.1| transcription-repair coupling factor [Corynebacterium diphtheriae
PW8]
Length = 1266
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 257/706 (36%), Positives = 410/706 (58%), Gaps = 41/706 (5%)
Query: 147 YKVDPYSLRSGDYVVHKKVGIGKFVGIKFDV--QKDSTVPIEYVFIEYADGMAKLPVKQ- 203
++VDP +L++GDYVVH+ GIG+F+ + V D T EY+ +EYA P Q
Sbjct: 512 HRVDPLALKTGDYVVHETHGIGRFLKMTERVIQSGDETSRREYIVLEYAASKRGQPADQL 571
Query: 204 -----ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRL 258
+ ML +Y ++P TLSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 572 YVPMDSLDMLSKYV---GGEKP-TLSKMGGSD-WKNTKKKARAAVREIAGELVELYAKR- 625
Query: 259 KQKRPPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFG 315
Q P + P +P E FPY T DQ A V+ D+ E+ +PMDR++ GDVG+G
Sbjct: 626 -QSAPGHAFAPDSPWQHEMEDNFPYVETEDQMLAIDAVKADM-EKPSPMDRVVVGDVGYG 683
Query: 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 375
KTEVA+RA F V G+Q +VL PT +LA+QH ER + +P + + LSRF S +E
Sbjct: 684 KTEVAVRAAFKAVQDGRQVVVLVPTTLLAQQHLSTFEERMAGFP-VTIKGLSRFTSPSES 742
Query: 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVL 435
+E L + G ++I++GTH LL + V + NLGL++VDEEQRFGV+ KE I + + VDVL
Sbjct: 743 KEILKGLADGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVL 802
Query: 436 TLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQV 495
T+SATPIPRTL +++ G R+ S I TPP +R PI T++ A ++V +AI+ EL R GQV
Sbjct: 803 TMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQVAAAIRRELLRDGQV 862
Query: 496 FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555
FYV ++ +E+ L++ P I +AHGQ LE+T++ F +L+CT IVE
Sbjct: 863 FYVHNKVSDIEKKARELRELVPEARIVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVE 922
Query: 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA 615
+GLDI NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP + L++ + +RLA
Sbjct: 923 TGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTENSYDRLAT 982
Query: 616 LEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDE 671
+ + +LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D
Sbjct: 983 IAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADG 1042
Query: 672 HCVISVPY--KSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESL 728
+ K ++ID+ ++ +P +YIN +E+ + A A ++D+ ++ E +
Sbjct: 1043 KVADATEQGPKEIRIDLPVDAHIPEDYINSERLRLEVYRKLAASANDKDLALVV---EEM 1099
Query: 729 RRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMK----TNMNKKVFKMMIDS 784
+ ++G P+ ++ LL +R +A G++ I G + + T+ + K + S
Sbjct: 1100 KDRFGPVPHEVKRLLAVSRLRHLARATGLSDIGVQGTRIKLHPVELTDSKQVRLKRLAPS 1159
Query: 785 MTSEVHRNSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
T ++ EG ++ + L ++ +LL W+ +AE++
Sbjct: 1160 ATYRAAAKAIQLPFPKEGAKVTDKQLRDV---ELLQWVADFIAEMF 1202
>gi|312901071|ref|ZP_07760360.1| transcription-repair coupling factor [Enterococcus faecalis TX0470]
gi|311291817|gb|EFQ70373.1| transcription-repair coupling factor [Enterococcus faecalis TX0470]
Length = 1189
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 501 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 558
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 559 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 614
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 615 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 673
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 674 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 732
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 733 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 792
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 793 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 852
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 853 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 912
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 913 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 972
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 973 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1031
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1032 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1088
>gi|257084193|ref|ZP_05578554.1| transcription-repair coupling factor [Enterococcus faecalis Fly1]
gi|256992223|gb|EEU79525.1| transcription-repair coupling factor [Enterococcus faecalis Fly1]
Length = 1179
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 491 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 548
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 549 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 604
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 605 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 663
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 664 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 722
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 723 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 782
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 783 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 842
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 843 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 902
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 903 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 962
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 963 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1021
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1022 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1078
>gi|430362592|ref|ZP_19427136.1| transcription-repair coupling factor [Enterococcus faecalis OG1X]
gi|430368663|ref|ZP_19428344.1| transcription-repair coupling factor [Enterococcus faecalis M7]
gi|429512106|gb|ELA01725.1| transcription-repair coupling factor [Enterococcus faecalis OG1X]
gi|429516107|gb|ELA05602.1| transcription-repair coupling factor [Enterococcus faecalis M7]
Length = 1179
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 491 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 548
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 549 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 604
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 605 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 663
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 664 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 722
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 723 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 782
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 783 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 842
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 843 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 902
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 903 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 962
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 963 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1021
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1022 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1078
>gi|422698801|ref|ZP_16756686.1| transcription-repair coupling factor [Enterococcus faecalis TX1346]
gi|315172643|gb|EFU16660.1| transcription-repair coupling factor [Enterococcus faecalis TX1346]
Length = 1189
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 501 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 558
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 559 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 614
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 615 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 673
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 674 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 732
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 733 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 792
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 793 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 852
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 853 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 912
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 913 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 972
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 973 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1031
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1032 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1088
>gi|170763931|ref|ZP_02635347.2| transcription-repair coupling factor [Clostridium perfringens B str.
ATCC 3626]
gi|170764087|ref|ZP_02631749.2| transcription-repair coupling factor [Clostridium perfringens E str.
JGS1987]
gi|170662722|gb|EDT15405.1| transcription-repair coupling factor [Clostridium perfringens E str.
JGS1987]
gi|170712080|gb|EDT24262.1| transcription-repair coupling factor [Clostridium perfringens B str.
ATCC 3626]
Length = 1168
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 246/643 (38%), Positives = 397/643 (61%), Gaps = 20/643 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH GIG + GIK +VQ +Y+ IEY+ G +PV+Q ++ +Y
Sbjct: 501 LKPGDYVVHVNSGIGVYKGIKQIEVQGHKR---DYLDIEYSKGDKLYVPVEQLD-LVQKY 556
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +++ P+ +SKL W++ K K + +I + DL++LY R K + K+
Sbjct: 557 -IGSDSASPK-ISKLG-GNEWQKAKAKVRKSINDIAGDLVKLYAERSTVKGYKFSKDTQW 613
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FPYE TPDQ A D++ D+ E MDRL+CGDVG+GKTEVA+RA F V
Sbjct: 614 QKQFEDEFPYEETPDQLSAIEDIKSDM-EANKVMDRLLCGDVGYGKTEVAIRAAFKAVME 672
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH+ + +RF+ +P I + ++SRF++K ++ E L +K G+++I+
Sbjct: 673 GKQVAFLVPTTILAEQHYKNMKKRFAGFP-ITIDMISRFRTKKQQTETLKALKEGNVDIL 731
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ + + +LGLL+VDEEQRFGV QKEKI SFK +VDVLTLSATPIPRTL+++L
Sbjct: 732 IGTHRLVSKDIQFKDLGLLIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSL 791
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG RD S+I TPP R PI+T++ + + + AI E++R GQV++V R++ ++E +
Sbjct: 792 TGVRDISVIETPPENRYPIQTYVVEQNDQLIRDAILREINRDGQVYFVHNRVESIQEVAN 851
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
++Q+ P + HGQ RQLE M F + +L+CT+I+E+G+DI N NT+IV D
Sbjct: 852 YIQELVPECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVND 911
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR++K A+AY Y +L++ A +RL AL++ ELG GF++A
Sbjct: 912 ADKMGLSQLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAM 971
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G Q G + +G DL+ ML +++ K+ + + P ++ +D+ ++
Sbjct: 972 RDLEIRGAGNMMGSAQHGHMAAIGYDLYCRMLEDTI-KIVKGEIEREPVETT-VDLKVDA 1029
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+PS YI +E+ + ++ + ++ E L ++ P ++ L+ Y++
Sbjct: 1030 FIPSSYIKDEIQKIEVYKKIAAIENEEDYEYVR--EELEDRFSNIPNTVYNLMDIAYIKS 1087
Query: 751 MAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEV 789
A + I +I + V + +K++FK++++ ++
Sbjct: 1088 KAKLLNIEEIKEKNEDVIFIFESRERTDKRIFKVLLEEYKDDI 1130
>gi|418934828|ref|ZP_13488648.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC128]
gi|377769825|gb|EHT93592.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC128]
Length = 1168
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 242/626 (38%), Positives = 391/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLISRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AYL +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYLLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|256855211|ref|ZP_05560572.1| transcription-repair coupling factor [Enterococcus faecalis T8]
gi|256709724|gb|EEU24771.1| transcription-repair coupling factor [Enterococcus faecalis T8]
Length = 1179
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 491 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 548
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 549 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 604
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 605 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 663
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 664 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 722
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 723 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 782
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 783 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 842
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 843 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 902
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 903 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 962
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 963 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1021
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1022 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1078
>gi|169830290|ref|YP_001716272.1| transcription-repair coupling factor [Candidatus Desulforudis
audaxviator MP104C]
gi|169637134|gb|ACA58640.1| transcription-repair coupling factor [Candidatus Desulforudis
audaxviator MP104C]
Length = 1176
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 253/620 (40%), Positives = 375/620 (60%), Gaps = 16/620 (2%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRML 208
+D +L GD+VVH GIG++ GI + + V EY+ I Y G KL V L
Sbjct: 496 LDELNLAPGDFVVHVNHGIGRYHGIV--LLEIGEVKREYLLINYL-GEDKLYVPTDQLGL 552
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY--- 265
+ + E + PR S+L + W R K + + A+++M +L++LY R Q P Y
Sbjct: 553 VQKYIGAEGETPRC-SRLGGSE-WARSKKRVREAVREMAQELLKLYAAR--QSLPGYRFP 608
Query: 266 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
NP EF FP+E TPDQ KA + V++D+ ER PMDRL+CGDVG+GKTEVA+RA+F
Sbjct: 609 ADNPWQREFELAFPFEETPDQLKAIMQVKKDM-ERPRPMDRLLCGDVGYGKTEVAMRAVF 667
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
V+ GKQA VL PT VLA+QH ERF+ YP + + +LSRF+S E+++ L + G
Sbjct: 668 KAVTDGKQAAVLVPTTVLAQQHLQTFRERFNGYP-VVIEMLSRFRSVREQKQVLADLAAG 726
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++I++GTH L+ V + +LGL+VVDEEQRFGV KEK+ +VDV+TL+ATPIPRT
Sbjct: 727 KVDIVIGTHRLVQDDVQFADLGLIVVDEEQRFGVLHKEKLKLRHPNVDVITLTATPIPRT 786
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
LY++L G RD SL+ TPP +R P++T + + A+ EL RGGQV++V R+ L
Sbjct: 787 LYMSLVGIRDTSLLETPPLDRFPVQTFVVEEDPVLIREAVGRELARGGQVYFVHNRVFEL 846
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
+ +LQ+ P IA+AHGQ QLE+ M F GA +L+CT I+E+GLDI N NT
Sbjct: 847 DRVAGWLQELVPEARIAVAHGQMREDQLEQVMLDFVAGAYDVLVCTTIIETGLDITNVNT 906
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
++V++ Q GLAQLYQLRGRVGR+++ A+AY + LL + A +RL A+ + + G G
Sbjct: 907 LVVKEADQLGLAQLYQLRGRVGRSNRLAYAYFTFRRDRLLGEAAEKRLRAIRDFTDFGSG 966
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
F+LA++D+ IRG G + G +Q G++ VG +++ +L ES+ ++ +++V ++
Sbjct: 967 FRLAKRDLEIRGAGNLLGTEQHGNISVVGFEMYCRLLEESVRELKGEAPPE-EFETV-VE 1024
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ + LP +YI E ++ + + Q + + E LR ++G P +E LL
Sbjct: 1025 VPVTAFLPDDYIPDPEQKVQFYHLLARV--QQVEDVDHVAEELRDRFGSPPAPVENLLAI 1082
Query: 746 LYVRRMAADIGITKIYASGK 765
+R MA I I G+
Sbjct: 1083 ARIRAMAKGFRIKSINGQGR 1102
>gi|417966137|ref|ZP_12607546.1| Transcription-repair coupling factor, partial [Candidatus
Arthromitus sp. SFB-5]
gi|380343384|gb|EIA31764.1| Transcription-repair coupling factor, partial [Candidatus
Arthromitus sp. SFB-5]
Length = 693
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 251/615 (40%), Positives = 378/615 (61%), Gaps = 14/615 (2%)
Query: 152 YSLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYR 210
Y L+ GDY+VH GIG + GIK D Q + +Y+ IEY D KL V L +
Sbjct: 22 YDLKPGDYIVHVNHGIGVYKGIKKIDFQ---GIERDYLDIEY-DKKDKLYVPIEQLDLVQ 77
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA 270
+ E K P+ ++KL + W + KTK + +I ++ +L++LY R K Y K+
Sbjct: 78 KYIGIEGKSPK-VNKLG-GSEWIKIKTKTRRSIDEIAYNLVKLYAKRNILKGYAYSKDST 135
Query: 271 I-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
++F +FPY TPDQ A D+++D+ E + PMDRL+CGDVG+GKTEVALRA+F V
Sbjct: 136 WQSQFEQEFPYVETPDQLLAIEDIKKDM-ESDKPMDRLLCGDVGYGKTEVALRAMFKAVV 194
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
+Q + L PT +LA QH++ + +RF +P V +LSRF++ +++E L +K G ++I
Sbjct: 195 DKRQVVFLVPTTILADQHYNNIKKRFEGFP-FNVDVLSRFRTTKQQKETLSKLKLGEIDI 253
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
IVGTH LL V + NLGLL++DEEQRFGVK KEKI K S+DVL+LSATPIPRTL+++
Sbjct: 254 IVGTHRLLSKDVQFKNLGLLIIDEEQRFGVKHKEKIKEMKESIDVLSLSATPIPRTLHMS 313
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
+ G RD S+I TPP +R P++T + +S + V AI E+ R GQ F++ ++ +++
Sbjct: 314 MVGVRDISVIDTPPEDRYPVQTFVVEYSDQLVRGAIMKEISRCGQGFFLYNSVENIDKMN 373
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+LQ P ++ HGQ R++E+ + KF I L+CT I+E+G+DI+NANTII+
Sbjct: 374 IYLQNLVPECRFSVIHGQMGEREIEDILIKFLNKDIDFLVCTTIIETGIDIKNANTIIIH 433
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
+ +FGL+QLYQLRGRVGR++K A+AYL Y +LS+ A +RL L++ ELG GF++A
Sbjct: 434 NADKFGLSQLYQLRGRVGRSNKVAYAYLTYKKDRVLSEVAEKRLKTLKDFTELGSGFKVA 493
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
KD+ IRG G + GE Q G + VG DL+ +ML E K+ + V V +V +DI I+
Sbjct: 494 MKDLEIRGSGNLIGESQHGQMSVVGYDLYCKML-EDAIKMLQGEVTCVEVNTV-VDIKID 551
Query: 690 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+ YI +E+ + + +D + E L ++ P+ ++ L+K Y+R
Sbjct: 552 VYIKDNYIEDEMQKLEIYKKI--SCIEDKKDISYIKEELMDRFSVIPFEIDNLIKISYIR 609
Query: 750 RMAADIGITKIYASG 764
+ +G ++I G
Sbjct: 610 ALGKKLGFSQIKEIG 624
>gi|376250984|ref|YP_005137865.1| transcription-repair coupling factor [Corynebacterium diphtheriae
HC03]
gi|372112488|gb|AEX78547.1| transcription-repair coupling factor [Corynebacterium diphtheriae
HC03]
Length = 1266
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 257/706 (36%), Positives = 410/706 (58%), Gaps = 41/706 (5%)
Query: 147 YKVDPYSLRSGDYVVHKKVGIGKFVGIKFDV--QKDSTVPIEYVFIEYADGMAKLPVKQ- 203
++VDP +L++GDYVVH+ GIG+F+ + V D T EY+ +EYA P Q
Sbjct: 512 HRVDPLALKTGDYVVHETHGIGRFLKMTERVIQSGDETSRREYIVLEYAASKRGQPADQL 571
Query: 204 -----ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRL 258
+ ML +Y ++P TLSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 572 YVPMDSLDMLSKYV---GGEKP-TLSKMGGSD-WKNTKKKARAAVREIAGELVELYAKR- 625
Query: 259 KQKRPPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFG 315
Q P + P +P E FPY T DQ A V+ D+ E+ +PMDR++ GDVG+G
Sbjct: 626 -QSAPGHAFAPDSPWQHEMEDNFPYVETEDQMLAIDAVKADM-EKPSPMDRVVVGDVGYG 683
Query: 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 375
KTEVA+RA F V G+Q +VL PT +LA+QH ER + +P + + LSRF S +E
Sbjct: 684 KTEVAVRAAFKAVQDGRQVVVLVPTTLLAQQHLSTFEERMAGFP-VTIKGLSRFTSPSES 742
Query: 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVL 435
+E L + G ++I++GTH LL + V + NLGL++VDEEQRFGV+ KE I + + VDVL
Sbjct: 743 KEILKGLADGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVL 802
Query: 436 TLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQV 495
T+SATPIPRTL +++ G R+ S I TPP +R PI T++ A ++V +AI+ EL R GQV
Sbjct: 803 TMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQVAAAIRRELLRDGQV 862
Query: 496 FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555
FYV ++ +E+ L++ P I +AHGQ LE+T++ F +L+CT IVE
Sbjct: 863 FYVHNKVSDIEKKARELRELVPEARIVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVE 922
Query: 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA 615
+GLDI NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP + L++ + +RLA
Sbjct: 923 TGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTENSYDRLAT 982
Query: 616 LEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDE 671
+ + +LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D
Sbjct: 983 IAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADG 1042
Query: 672 HCVISVPY--KSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESL 728
+ K ++ID+ ++ +P +YIN +E+ + A A ++D+ ++ E +
Sbjct: 1043 KVADATEQGPKEIRIDLPVDAHIPEDYINSERLRLEVYRKLAASANDKDLALVV---EEM 1099
Query: 729 RRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMK----TNMNKKVFKMMIDS 784
+ ++G P+ ++ LL +R +A G++ I G + + T+ + K + S
Sbjct: 1100 KDRFGPVPHEVKRLLAVSRLRHLARATGLSDIGVQGTRIKLHPVELTDSKQVRLKRLAPS 1159
Query: 785 MTSEVHRNSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
T ++ EG ++ + L ++ +LL W+ +AE++
Sbjct: 1160 ATYRAAAKAIQLPFPKEGAKVTDKQLRDV---ELLQWVADFIAEMF 1202
>gi|422726415|ref|ZP_16782862.1| transcription-repair coupling factor [Enterococcus faecalis TX0312]
gi|315158594|gb|EFU02611.1| transcription-repair coupling factor [Enterococcus faecalis TX0312]
Length = 1189
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 501 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 558
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 559 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 614
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 615 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 673
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 674 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 732
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 733 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 792
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 793 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 852
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 853 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 912
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 913 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 972
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 973 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1031
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1032 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1088
>gi|376256803|ref|YP_005144694.1| transcription-repair coupling factor [Corynebacterium diphtheriae
VA01]
gi|372119320|gb|AEX83054.1| transcription-repair coupling factor [Corynebacterium diphtheriae
VA01]
Length = 1266
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 257/706 (36%), Positives = 410/706 (58%), Gaps = 41/706 (5%)
Query: 147 YKVDPYSLRSGDYVVHKKVGIGKFVGIKFDV--QKDSTVPIEYVFIEYADGMAKLPVKQ- 203
++VDP +L++GDYVVH+ GIG+F+ + V D T EY+ +EYA P Q
Sbjct: 512 HRVDPLALKTGDYVVHETHGIGRFLKMTERVIQSGDETSRREYIVLEYAASKRGQPADQL 571
Query: 204 -----ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRL 258
+ ML +Y ++P TLSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 572 YVPMDSLDMLSKYV---GGEKP-TLSKMGGSD-WKNTKKKARAAVREIAGELVELYAKR- 625
Query: 259 KQKRPPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFG 315
Q P + P +P E FPY T DQ A V+ D+ E+ +PMDR++ GDVG+G
Sbjct: 626 -QSAPGHAFAPDSPWQHEMEDNFPYVETEDQMLAIDAVKADM-EKPSPMDRVVVGDVGYG 683
Query: 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 375
KTEVA+RA F V G+Q +VL PT +LA+QH ER + +P + + LSRF S +E
Sbjct: 684 KTEVAVRAAFKAVQDGRQVVVLVPTTLLAQQHLSTFEERMAGFP-VTIKGLSRFTSPSES 742
Query: 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVL 435
+E L + G ++I++GTH LL + V + NLGL++VDEEQRFGV+ KE I + + VDVL
Sbjct: 743 KEILKGLADGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVL 802
Query: 436 TLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQV 495
T+SATPIPRTL +++ G R+ S I TPP +R PI T++ A ++V +AI+ EL R GQV
Sbjct: 803 TMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQVAAAIRRELLRDGQV 862
Query: 496 FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555
FYV ++ +E+ L++ P I +AHGQ LE+T++ F +L+CT IVE
Sbjct: 863 FYVHNKVSDIEKKARELRELVPEARIVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVE 922
Query: 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA 615
+GLDI NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP + L++ + +RLA
Sbjct: 923 TGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTENSYDRLAT 982
Query: 616 LEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDE 671
+ + +LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D
Sbjct: 983 IAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADG 1042
Query: 672 HCVISVPY--KSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESL 728
+ K ++ID+ ++ +P +YIN +E+ + A A ++D+ ++ E +
Sbjct: 1043 KVADATEQGPKEIRIDLPVDAHIPEDYINSERLRLEVYRKLAASANDKDLALVV---EEM 1099
Query: 729 RRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMK----TNMNKKVFKMMIDS 784
+ ++G P+ ++ LL +R +A G++ I G + + T+ + K + S
Sbjct: 1100 KDRFGPVPHEVKRLLAVSRLRHLARATGLSDIGVQGTRIKLHPVELTDSKQVRLKRLAPS 1159
Query: 785 MTSEVHRNSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
T ++ EG ++ + L ++ +LL W+ +AE++
Sbjct: 1160 ATYRAAAKAIQLPFPKEGAKVTDKQLRDV---ELLQWVADFIAEMF 1202
>gi|376248193|ref|YP_005140137.1| transcription-repair coupling factor [Corynebacterium diphtheriae
HC04]
gi|372114761|gb|AEX80819.1| transcription-repair coupling factor [Corynebacterium diphtheriae
HC04]
Length = 1266
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 257/706 (36%), Positives = 410/706 (58%), Gaps = 41/706 (5%)
Query: 147 YKVDPYSLRSGDYVVHKKVGIGKFVGIKFDV--QKDSTVPIEYVFIEYADGMAKLPVKQ- 203
++VDP +L++GDYVVH+ GIG+F+ + V D T EY+ +EYA P Q
Sbjct: 512 HRVDPLALKTGDYVVHETHGIGRFLKMTERVIQSGDETSRREYIVLEYAASKRGQPADQL 571
Query: 204 -----ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRL 258
+ ML +Y ++P TLSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 572 YVPMDSLDMLSKYV---GGEKP-TLSKMGGSD-WKNTKKKARAAVREIAGELVELYAKR- 625
Query: 259 KQKRPPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFG 315
Q P + P +P E FPY T DQ A V+ D+ E+ +PMDR++ GDVG+G
Sbjct: 626 -QSAPGHAFAPDSPWQHEMEDNFPYVETEDQMLAIDAVKADM-EKPSPMDRVVVGDVGYG 683
Query: 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 375
KTEVA+RA F V G+Q +VL PT +LA+QH ER + +P + + LSRF S +E
Sbjct: 684 KTEVAVRAAFKAVQDGRQVVVLVPTTLLAQQHLSTFEERMAGFP-VTIKGLSRFTSPSES 742
Query: 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVL 435
+E L + G ++I++GTH LL + V + NLGL++VDEEQRFGV+ KE I + + VDVL
Sbjct: 743 KEILKGLADGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVL 802
Query: 436 TLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQV 495
T+SATPIPRTL +++ G R+ S I TPP +R PI T++ A ++V +AI+ EL R GQV
Sbjct: 803 TMSATPIPRTLEISMAGIREMSTILTPPEDRHPILTYVGAQEDKQVAAAIRRELLRDGQV 862
Query: 496 FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555
FYV ++ +E+ L++ P I +AHGQ LE+T++ F +L+CT IVE
Sbjct: 863 FYVHNKVSDIEKKARELRELVPEARIVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVE 922
Query: 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA 615
+GLDI NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP + L++ + +RLA
Sbjct: 923 TGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTENSYDRLAT 982
Query: 616 LEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDE 671
+ + +LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D
Sbjct: 983 IAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADG 1042
Query: 672 HCVISVPY--KSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESL 728
+ K ++ID+ ++ +P +YIN +E+ + A A ++D+ ++ E +
Sbjct: 1043 KVADATEQGPKEIRIDLPVDAHIPEDYINSERLRLEVYRKLAASANDKDLALVV---EEM 1099
Query: 729 RRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMK----TNMNKKVFKMMIDS 784
+ ++G P+ ++ LL +R +A G++ I G + + T+ + K + S
Sbjct: 1100 KDRFGPVPHEVKRLLAVSRLRHLARATGLSDIGVQGTRIKLHPVELTDSKQVRLKRLAPS 1159
Query: 785 MTSEVHRNSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
T ++ EG ++ + L ++ +LL W+ +AE++
Sbjct: 1160 ATYRAAAKAIQLPFPKEGAKVTDKQLRDV---ELLQWVADFIAEMF 1202
>gi|38233507|ref|NP_939274.1| transcription-repair coupling factor [Corynebacterium diphtheriae
NCTC 13129]
gi|38199767|emb|CAE49427.1| transcription-repair coupling factor [Corynebacterium diphtheriae]
Length = 1264
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 257/706 (36%), Positives = 410/706 (58%), Gaps = 41/706 (5%)
Query: 147 YKVDPYSLRSGDYVVHKKVGIGKFVGIKFDV--QKDSTVPIEYVFIEYADGMAKLPVKQ- 203
++VDP +L++GDYVVH+ GIG+F+ + V D T EY+ +EYA P Q
Sbjct: 510 HRVDPLALKTGDYVVHETHGIGRFLKMTERVIQSGDETSRREYIVLEYAASKRGQPADQL 569
Query: 204 -----ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRL 258
+ ML +Y ++P TLSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 570 YVPMDSLDMLSKYV---GGEKP-TLSKMGGSD-WKNTKKKARAAVREIAGELVELYAKR- 623
Query: 259 KQKRPPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFG 315
Q P + P +P E FPY T DQ A V+ D+ E+ +PMDR++ GDVG+G
Sbjct: 624 -QSAPGHAFAPDSPWQHEMEDNFPYVETEDQMLAIDAVKADM-EKPSPMDRVVVGDVGYG 681
Query: 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 375
KTEVA+RA F V G+Q +VL PT +LA+QH ER + +P + + LSRF S +E
Sbjct: 682 KTEVAVRAAFKAVQDGRQVVVLVPTTLLAQQHLSTFEERMAGFP-VTIKGLSRFTSPSES 740
Query: 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVL 435
+E L + G ++I++GTH LL + V + NLGL++VDEEQRFGV+ KE I + + VDVL
Sbjct: 741 KEILKGLADGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVL 800
Query: 436 TLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQV 495
T+SATPIPRTL +++ G R+ S I TPP +R PI T++ A ++V +AI+ EL R GQV
Sbjct: 801 TMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQVAAAIRRELLRDGQV 860
Query: 496 FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555
FYV ++ +E+ L++ P I +AHGQ LE+T++ F +L+CT IVE
Sbjct: 861 FYVHNKVSDIEKKARELRELVPEARIVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVE 920
Query: 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA 615
+GLDI NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP + L++ + +RLA
Sbjct: 921 TGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTENSYDRLAT 980
Query: 616 LEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDE 671
+ + +LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D
Sbjct: 981 IAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADG 1040
Query: 672 HCVISVPY--KSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESL 728
+ K ++ID+ ++ +P +YIN +E+ + A A ++D+ ++ E +
Sbjct: 1041 KVADATEQGPKEIRIDLPVDAHIPEDYINSERLRLEVYRKLAASANDKDLALVV---EEM 1097
Query: 729 RRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMK----TNMNKKVFKMMIDS 784
+ ++G P+ ++ LL +R +A G++ I G + + T+ + K + S
Sbjct: 1098 KDRFGPVPHEVKRLLAVSRLRHLARATGLSDIGVQGTRIKLHPVELTDSKQVRLKRLAPS 1157
Query: 785 MTSEVHRNSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
T ++ EG ++ + L ++ +LL W+ +AE++
Sbjct: 1158 ATYRAAAKAIQLPFPKEGAKVTDKQLRDV---ELLQWVADFIAEMF 1200
>gi|257088020|ref|ZP_05582381.1| transcription-repair coupling factor [Enterococcus faecalis D6]
gi|256996050|gb|EEU83352.1| transcription-repair coupling factor [Enterococcus faecalis D6]
Length = 1179
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 491 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 548
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 549 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 604
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 605 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 663
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 664 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 722
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 723 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 782
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 783 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 842
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 843 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 902
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 903 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 962
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 963 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1021
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1022 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1078
>gi|182624347|ref|ZP_02952132.1| transcription-repair coupling factor [Clostridium perfringens D str.
JGS1721]
gi|177910565|gb|EDT72938.1| transcription-repair coupling factor [Clostridium perfringens D str.
JGS1721]
Length = 1168
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 246/643 (38%), Positives = 397/643 (61%), Gaps = 20/643 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH GIG + GIK +VQ +Y+ IEY+ G +PV+Q ++ +Y
Sbjct: 501 LKPGDYVVHVNSGIGVYKGIKQIEVQGHKR---DYLDIEYSKGDKLYVPVEQLD-LVQKY 556
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +++ P+ +SKL W++ K K + +I + DL++LY R K + K+
Sbjct: 557 -IGSDSASPK-ISKLG-GNEWQKAKAKVRKSINDIAGDLVKLYAERSTVKGYKFSKDTQW 613
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FPYE TPDQ A D++ D+ E MDRL+CGDVG+GKTEVA+RA F V
Sbjct: 614 QKQFEDEFPYEETPDQLSAIEDIKSDM-EANKVMDRLLCGDVGYGKTEVAIRAAFKAVME 672
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH+ + +RF+ +P I + ++SRF++K ++ E L +K G+++I+
Sbjct: 673 GKQVAFLVPTTILAEQHYKNMKKRFAGFP-ITIDMISRFRTKKQQTETLKALKEGNVDIL 731
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ + + +LGLL+VDEEQRFGV QKEKI SFK +VDVLTLSATPIPRTL+++L
Sbjct: 732 IGTHRLVSKDIQFKDLGLLIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSL 791
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG RD S+I TPP R PI+T++ + + + AI E++R GQV++V R++ ++E +
Sbjct: 792 TGVRDISVIETPPENRYPIQTYVVEQNDQLIRDAILREINRDGQVYFVHNRVESIQEVAN 851
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
++Q+ P + HGQ RQLE M F + +L+CT+I+E+G+DI N NT+IV D
Sbjct: 852 YIQELVPECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVND 911
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR++K A+AY Y +L++ A +RL AL++ ELG GF++A
Sbjct: 912 ADKMGLSQLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAM 971
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G Q G + +G DL+ ML +++ K+ + + P ++ +D+ ++
Sbjct: 972 RDLEIRGAGNMMGSAQHGHMAAIGYDLYCRMLEDTI-KIVKGEIEREPVETT-VDLKVDA 1029
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+PS YI +E+ + ++ + ++ E L ++ P ++ L+ Y++
Sbjct: 1030 FIPSSYIKDEIQKIEVYKKIAAIENEEDYEYVR--EELEDRFSNIPNTVYNLMDIAYIKS 1087
Query: 751 MAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEV 789
A + I +I + V + +K++FK++++ ++
Sbjct: 1088 KAKLLNIEEIKEKNEDVIFIFESRERTDKRIFKVLLEEYKDDI 1130
>gi|257418651|ref|ZP_05595645.1| transcription-repair coupling factor [Enterococcus faecalis T11]
gi|257160479|gb|EEU90439.1| transcription-repair coupling factor [Enterococcus faecalis T11]
Length = 1179
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 491 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 548
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 549 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 604
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 605 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 663
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 664 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 722
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 723 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 782
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 783 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 842
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 843 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 902
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 903 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 962
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 963 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1021
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1022 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1078
>gi|421512582|ref|ZP_15959385.1| Transcription-repair coupling factor [Enterococcus faecalis ATCC
29212]
gi|401674270|gb|EJS80625.1| Transcription-repair coupling factor [Enterococcus faecalis ATCC
29212]
Length = 1179
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 491 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 548
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 549 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 604
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 605 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 663
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 664 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 722
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 723 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 782
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 783 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 842
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 843 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 902
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 903 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 962
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 963 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1021
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1022 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1078
>gi|293382707|ref|ZP_06628632.1| transcription-repair coupling factor [Enterococcus faecalis R712]
gi|293388111|ref|ZP_06632638.1| transcription-repair coupling factor [Enterococcus faecalis S613]
gi|307268510|ref|ZP_07549885.1| transcription-repair coupling factor [Enterococcus faecalis TX4248]
gi|312908603|ref|ZP_07767545.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
512]
gi|312909249|ref|ZP_07768106.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
516]
gi|422695394|ref|ZP_16753380.1| transcription-repair coupling factor [Enterococcus faecalis TX4244]
gi|422708808|ref|ZP_16766329.1| transcription-repair coupling factor [Enterococcus faecalis TX0027]
gi|422719761|ref|ZP_16776385.1| transcription-repair coupling factor [Enterococcus faecalis TX0017]
gi|291079867|gb|EFE17231.1| transcription-repair coupling factor [Enterococcus faecalis R712]
gi|291082487|gb|EFE19450.1| transcription-repair coupling factor [Enterococcus faecalis S613]
gi|306515171|gb|EFM83711.1| transcription-repair coupling factor [Enterococcus faecalis TX4248]
gi|310625390|gb|EFQ08673.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
512]
gi|311290491|gb|EFQ69047.1| transcription-repair coupling factor [Enterococcus faecalis DAPTO
516]
gi|315032977|gb|EFT44909.1| transcription-repair coupling factor [Enterococcus faecalis TX0017]
gi|315036610|gb|EFT48542.1| transcription-repair coupling factor [Enterococcus faecalis TX0027]
gi|315147120|gb|EFT91136.1| transcription-repair coupling factor [Enterococcus faecalis TX4244]
Length = 1189
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 501 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 558
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 559 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 614
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 615 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 673
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 674 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 732
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 733 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 792
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 793 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 852
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 853 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 912
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 913 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 972
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 973 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1031
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1032 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1088
>gi|317120949|ref|YP_004100952.1| transcription-repair coupling factor [Thermaerobacter marianensis DSM
12885]
gi|315590929|gb|ADU50225.1| transcription-repair coupling factor [Thermaerobacter marianensis DSM
12885]
Length = 1219
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 257/624 (41%), Positives = 378/624 (60%), Gaps = 20/624 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
L+ GDYVVH GIG+F+G++ ++Q V +Y+ I+YA G +L V L +
Sbjct: 514 DLKPGDYVVHVHHGIGRFLGLRTMEIQG---VHRDYLTIQYAGG-DRLYVPTDQIELVQK 569
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
+ E +PR L+KL + W + K + K +++++ +L+ LY R + + P P
Sbjct: 570 YVGAEGHQPR-LAKLG-SGEWNKVKQRVKESVRELAGELLALYAARQTLRGHAFGPDTPW 627
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F FPY+ TPDQ +A ++ D+ ER PMDRL+ GDVGFGKTEVA+RA F V
Sbjct: 628 QRQFEDAFPYQETPDQLEAIAAIKADM-ERPVPMDRLLVGDVGFGKTEVAMRAAFKAVQD 686
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ VL PT VLA QH ERF+ +P + + LSRF S AE+ E L + G ++I+
Sbjct: 687 GKQVAVLVPTTVLAYQHERTFKERFAPFP-VTIRTLSRFASPAEQAEILTGLAQGTIDIV 745
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ V + +LGLL++DEE RFGV KE++ K +VDVLTLSATPIPRTL++AL
Sbjct: 746 IGTHRLVQPDVRFKDLGLLIIDEEHRFGVAHKERLKQLKQNVDVLTLSATPIPRTLHMAL 805
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S I TPP R P++T + + + V AI+ EL RGGQVFYV R++ ++
Sbjct: 806 AGIRDLSRIDTPPENRFPVQTFVVEWHESLVRDAIQRELRRGGQVFYVHNRVQSIQAVRR 865
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L++ P A+AHGQ +LE M F G +L+CT I+ESGLD+ N NT+IV+D
Sbjct: 866 RLERLVPEARFAVAHGQMGEGELERVMVDFMAGKADVLVCTTIIESGLDMPNVNTLIVED 925
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+FGLAQLYQLRGRVGR+D+ A+AY Y +L++ A +RL A+++ ELG GF+LA
Sbjct: 926 ADRFGLAQLYQLRGRVGRSDRVAYAYFTYRRDKVLTEDAQKRLQAIKDFTELGAGFKLAL 985
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G +Q G + +VG DL+ ++L E+++++ + K V +D+ ++
Sbjct: 986 RDLEIRGAGNLLGAEQHGFMLSVGFDLYAQLLEEAVAELRGRRRPAR-LKPV-VDLVVDA 1043
Query: 691 RLPSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
+P YI +E VN AE A+ L + E+L+ +YG P + LL
Sbjct: 1044 HIPDSYIRDARQKIEFYKRVNLAETPAD-----LAEVREALQDRYGPPPEPVRNLLALAE 1098
Query: 748 VRRMAADIGITKIYASGKMVGMKT 771
+R++AA G+ +I G V ++
Sbjct: 1099 IRQLAARCGVFRIEQQGTRVDLEA 1122
>gi|422723127|ref|ZP_16779665.1| transcription-repair coupling factor [Enterococcus faecalis TX2137]
gi|424671697|ref|ZP_18108688.1| transcription-repair coupling factor [Enterococcus faecalis 599]
gi|315026785|gb|EFT38717.1| transcription-repair coupling factor [Enterococcus faecalis TX2137]
gi|402357965|gb|EJU92653.1| transcription-repair coupling factor [Enterococcus faecalis 599]
Length = 1189
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 501 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 558
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 559 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 614
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 615 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 673
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 674 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 732
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 733 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 792
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 793 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 852
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 853 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 912
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 913 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 972
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 973 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1031
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1032 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1088
>gi|422702615|ref|ZP_16760444.1| transcription-repair coupling factor [Enterococcus faecalis TX1302]
gi|315165851|gb|EFU09868.1| transcription-repair coupling factor [Enterococcus faecalis TX1302]
Length = 1189
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 501 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 558
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 559 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 614
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 615 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 673
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 674 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 732
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 733 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 792
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 793 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 852
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 853 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 912
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 913 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 972
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 973 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1031
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1032 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1088
>gi|258513568|ref|YP_003189790.1| transcription-repair coupling factor [Desulfotomaculum acetoxidans
DSM 771]
gi|257777273|gb|ACV61167.1| transcription-repair coupling factor [Desulfotomaculum acetoxidans
DSM 771]
Length = 1197
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 257/618 (41%), Positives = 381/618 (61%), Gaps = 32/618 (5%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK----FDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRM 207
L++GDYVVH GIG++ G+ DV++D Y+ ++YA G KL P Q M
Sbjct: 531 LKTGDYVVHVNHGIGRYDGVVQLTIGDVKRD------YLLVKYA-GEDKLYIPTDQVE-M 582
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK 267
+ +Y L +E P+ LS+L W R K+K K A+++M +L+ LY R + P+ K
Sbjct: 583 IQKY-LGSEGGTPK-LSRLGGA-EWSRVKSKVKEAVKEMAQELLALYAAREAVQGHPFSK 639
Query: 268 NPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
+ EF A FPYE TPDQ KA +V+ D+ ER PMDRL+CGDVG+GKTEVALRA F
Sbjct: 640 DTVWQQEFEAAFPYEETPDQLKAIEEVKADM-ERPRPMDRLLCGDVGYGKTEVALRAAFK 698
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
V GKQ VL PT +LA+QHF+ ERF+KYP + + +LSRF + + + + + G
Sbjct: 699 AVMDGKQVAVLVPTTILAQQHFNTFKERFAKYP-VNIAMLSRFITARRQRQIVQELLLGQ 757
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
++I++GTH L+ + + +LGL+VVDEEQRFGV KEK+ + +VDVLTL+ATPIPRTL
Sbjct: 758 VDIVIGTHRLVQDDIKFKDLGLVVVDEEQRFGVTHKEKLKQLRQNVDVLTLTATPIPRTL 817
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVI--SAIKYELDRGGQVFYVLPRIKG 504
++++ G RD SL+ TPP +R+P++T++ +E VI AI+ EL RGGQV+YV R+
Sbjct: 818 HMSIVGVRDTSLLETPPEDRIPVQTYV--LEEEPVIVREAIRRELGRGGQVYYVHNRVAD 875
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
L+ +L+ P IAI HGQ +LE M F IL+CT I+E+GLDIQN N
Sbjct: 876 LDRVAGWLKGLVPDAAIAIGHGQMKEDRLENVMLDFMNKKFDILLCTTIIETGLDIQNVN 935
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+IV+D GLAQLYQLRGRVGR ++ A+AY + ++S+ A +RL+A+ E E G
Sbjct: 936 TLIVKDADYMGLAQLYQLRGRVGRTNRLAYAYCTFRGDKVMSELAEKRLSAVREFTEFGS 995
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL--SKVDEHCVISVPYKSV 682
G+++A +D+ IRG G I G +Q G + VG DL+ +L E++ +K E+ + P +++
Sbjct: 996 GYKIAMRDLEIRGAGNILGPEQHGHIAAVGFDLYCRLLEEAVLEAKGGEN---AKPIETL 1052
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
+++ + +P EY+ L +E+ A +DI L + + L ++G P + L
Sbjct: 1053 -VELPVTAYIPDEYVIDLNQKVELYKRM--ANIRDIKMLSEMEDELIDRFGDIPEPVLNL 1109
Query: 743 LKKLYVRRMAADIGITKI 760
L ++ +A ++ I I
Sbjct: 1110 LAVTRIKALAVNLKIKNI 1127
>gi|49482730|ref|YP_039954.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MRSA252]
gi|295427037|ref|ZP_06819674.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|418581174|ref|ZP_13145258.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1605]
gi|418891068|ref|ZP_13445187.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1176]
gi|418896885|ref|ZP_13450959.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC341D]
gi|418901567|ref|ZP_13455617.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1214]
gi|418908253|ref|ZP_13462262.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG149]
gi|418917794|ref|ZP_13471751.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1267]
gi|418922132|ref|ZP_13476050.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1233]
gi|418982902|ref|ZP_13530608.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1242]
gi|418985000|ref|ZP_13532691.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1500]
gi|81828081|sp|Q6GJG8.1|MFD_STAAR RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|49240859|emb|CAG39526.1| putative transcription-repair coupling factor [Staphylococcus aureus
subsp. aureus MRSA252]
gi|295129040|gb|EFG58669.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|377700659|gb|EHT24994.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1214]
gi|377703412|gb|EHT27727.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1242]
gi|377708214|gb|EHT32504.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1500]
gi|377712218|gb|EHT36439.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1605]
gi|377733142|gb|EHT57188.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1176]
gi|377736312|gb|EHT60338.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1233]
gi|377749429|gb|EHT73378.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1267]
gi|377757054|gb|EHT80949.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG149]
gi|377762372|gb|EHT86237.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC341D]
Length = 1168
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 391/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQIHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|255971757|ref|ZP_05422343.1| transcription-repair coupling factor [Enterococcus faecalis T1]
gi|257421547|ref|ZP_05598537.1| transcription-repair coupling factor [Enterococcus faecalis X98]
gi|384517337|ref|YP_005704642.1| transcription-repair coupling factor [Enterococcus faecalis 62]
gi|255962775|gb|EET95251.1| transcription-repair coupling factor [Enterococcus faecalis T1]
gi|257163371|gb|EEU93331.1| transcription-repair coupling factor [Enterococcus faecalis X98]
gi|323479470|gb|ADX78909.1| transcription-repair coupling factor [Enterococcus faecalis 62]
Length = 1179
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 491 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 548
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 549 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 604
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 605 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 663
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 664 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 722
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 723 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 782
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 783 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 842
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 843 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 902
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 903 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 962
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 963 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1021
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1022 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1078
>gi|227832736|ref|YP_002834443.1| transcription-repair coupling factor [Corynebacterium aurimucosum
ATCC 700975]
gi|262182774|ref|ZP_06042195.1| transcription-repair coupling factor [Corynebacterium aurimucosum
ATCC 700975]
gi|227453752|gb|ACP32505.1| transcription-repair coupling factor [Corynebacterium aurimucosum
ATCC 700975]
Length = 1212
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 249/637 (39%), Positives = 373/637 (58%), Gaps = 28/637 (4%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQK-DSTVPIEYVFIEYADGMAKLPVKQ-- 203
+VDP +L+ GDYVVH+ GIGKF+ + + VQ D T EY+ +EYA P Q
Sbjct: 501 RVDPLALKQGDYVVHETHGIGKFLKMAERTVQSGDETSRREYIVLEYAASKRGQPADQLW 560
Query: 204 ----ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK 259
+ +L +Y TLSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 561 VPMDSLDLLSKYT----GGEAPTLSKMGGSD-WKNTKKKARAAVREIAGELVELYAKR-- 613
Query: 260 QKRPPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGK 316
Q P + P P AE FP+ T DQ A V+ D+ E PMDR++ GDVG+GK
Sbjct: 614 QAAPGHQFGPDTPWQAEMEDNFPFVETEDQMLAIDAVKEDM-ESTVPMDRVVVGDVGYGK 672
Query: 317 TEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKE 376
TEVA+RA F V GKQ VL PT +LA+QH D ER +P + + +LSRF S E +
Sbjct: 673 TEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHADTFRERMQGFP-VDIEVLSRFTSAKESK 731
Query: 377 EHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLT 436
E L + G ++I++GTH LL + V + NLGL+VVDEEQRFGV+ KE I + K SVDVLT
Sbjct: 732 EILAGLADGSVDIVIGTHRLLQTGVQWKNLGLIVVDEEQRFGVEHKEHIKALKASVDVLT 791
Query: 437 LSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVF 496
+SATPIPRTL +++ G R+ S I TPP +R P+ T++ A+ ++V +AI+ EL R GQVF
Sbjct: 792 MSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYEDKQVAAAIRRELLRDGQVF 851
Query: 497 YVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556
++ ++ +E+ L+ P I +AHGQ LE T++ F +L+CT IVE+
Sbjct: 852 FIHNKVADIEKKARELRDLVPEARIVVAHGQMNEDVLERTVQGFWDREFDVLVCTTIVET 911
Query: 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAAL 616
GLDI NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP + L++ + +RLA +
Sbjct: 912 GLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATI 971
Query: 617 EECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML------FESLSKVD 670
+ +LG G +A KD+ +RG G + G +Q+G + VG DL+ ++ F++L++ +
Sbjct: 972 AQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVETFKALARGE 1031
Query: 671 EHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRR 730
V K ++ID+ ++ +P YIN +E+ + AA ++ L E ++
Sbjct: 1032 TPVVTDEGPKEIRIDLPVDAHIPESYINSERLRLEVYRKL--AASKENADLAHVVEEMQD 1089
Query: 731 QYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 767
+YG P +E LL +R A G++ I G +
Sbjct: 1090 RYGPVPEPVERLLAVARLRHQARRAGVSDITVQGTRI 1126
>gi|345858302|ref|ZP_08810699.1| transcription-repair coupling factor [Desulfosporosinus sp. OT]
gi|344328618|gb|EGW39999.1| transcription-repair coupling factor [Desulfosporosinus sp. OT]
Length = 1191
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 250/615 (40%), Positives = 373/615 (60%), Gaps = 25/615 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L+ DYVVH GIG+F GI D + + +Y I YA + +P+ Q +L +Y
Sbjct: 517 LKPDDYVVHVHHGIGQFTGI--DRLEVGGIEKDYFGIRYAGEDRLYVPLDQL-HLLQKYL 573
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK-NPAI 271
P+ L KL T W + K+K + A++ M +DL++LY R + + N
Sbjct: 574 GSGAESLPK-LYKLGGT-EWHKVKSKTRSAVKDMAIDLVKLYAQREAIQGYAFSSDNVWQ 631
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF +FPY TPDQ ++ DV+ D+ R PMDRL+CGDVG+GKTEVALRA F V+
Sbjct: 632 NEFEEKFPYAETPDQLQSIADVKADMM-RSRPMDRLLCGDVGYGKTEVALRAAFKAVTDS 690
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT +LA+QHF+ ERF YP I + +LSRF+S E++E L +K G +++IV
Sbjct: 691 KQVAVLVPTTILAQQHFNTFKERFIGYP-ITIEMLSRFRSPKEQKEILQGLKDGRIDVIV 749
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L V + +LGLLV+DEEQRFGV KEK+ + K +VDVLTLSATPIPRTL+++L
Sbjct: 750 GTHRILAEAVKFKDLGLLVIDEEQRFGVAHKEKLKTLKGNVDVLTLSATPIPRTLHMSLV 809
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T+++ F E V AI+ E+ RGGQVFYV R++ +++ +
Sbjct: 810 GVRDMSVIETPPEGRYPVQTYVTEFRPEVVRDAIRREIQRGGQVFYVHNRVEDMDQVTQY 869
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L Q P +AHGQ LE M F + + +L+ T I+E+GLD+ N NT+I+ +
Sbjct: 870 LSQLVPEARFGVAHGQMREMALERVMLAFLEQEMDVLVSTTIIETGLDMPNVNTLIIDEA 929
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+FGL+QLYQLRGRVGR++++A AYL Y + +L++ A +RL+A+ E E G GF++A +
Sbjct: 930 DRFGLSQLYQLRGRVGRSNRKAFAYLLYKPQKVLTEIAEKRLSAIREFTEFGAGFKIAMR 989
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG +L+ +ML E++ ++ V V S I++ ++
Sbjct: 990 DLEIRGAGNLIGAQQHGHLAAVGFELYSQMLKEAVQELRGETVEEVIEPS--IELQVDAF 1047
Query: 692 LPSEYI------NHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
LP Y+ L + MV + E+ E + L ++G +E L++
Sbjct: 1048 LPDPYVVDRQTKASLYQRLAMVRDEEQLGE--------MVDELVDRFGTPTREVEHLIEI 1099
Query: 746 LYVRRMAADIGITKI 760
+ ++ +A+ + I +I
Sbjct: 1100 IRIKLLASTLKIEQI 1114
>gi|307274221|ref|ZP_07555429.1| transcription-repair coupling factor [Enterococcus faecalis TX0855]
gi|422728433|ref|ZP_16784851.1| transcription-repair coupling factor [Enterococcus faecalis TX0012]
gi|306509183|gb|EFM78245.1| transcription-repair coupling factor [Enterococcus faecalis TX0855]
gi|315151127|gb|EFT95143.1| transcription-repair coupling factor [Enterococcus faecalis TX0012]
Length = 1189
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 501 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 558
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 559 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 614
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 615 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 673
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 674 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 732
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 733 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 792
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 793 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 852
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 853 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 912
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 913 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 972
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 973 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1031
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1032 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1088
>gi|375290547|ref|YP_005125087.1| transcription-repair coupling factor [Corynebacterium diphtheriae
241]
gi|376245381|ref|YP_005135620.1| transcription-repair coupling factor [Corynebacterium diphtheriae
HC01]
gi|371580218|gb|AEX43885.1| transcription-repair coupling factor [Corynebacterium diphtheriae
241]
gi|372108011|gb|AEX74072.1| transcription-repair coupling factor [Corynebacterium diphtheriae
HC01]
Length = 1266
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 257/706 (36%), Positives = 410/706 (58%), Gaps = 41/706 (5%)
Query: 147 YKVDPYSLRSGDYVVHKKVGIGKFVGIKFDV--QKDSTVPIEYVFIEYADGMAKLPVKQ- 203
++VDP +L++GDYVVH+ GIG+F+ + V D T EY+ +EYA P Q
Sbjct: 512 HRVDPLALKTGDYVVHETHGIGRFLKMTERVIQSGDETSRREYIVLEYAASKRGQPADQL 571
Query: 204 -----ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRL 258
+ ML +Y ++P TLSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 572 YVPMDSLDMLSKYV---GGEKP-TLSKMGGSD-WKNTKKKARAAVREIAGELVELYAKR- 625
Query: 259 KQKRPPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFG 315
Q P + P +P E FPY T DQ A V+ D+ E+ +PMDR++ GDVG+G
Sbjct: 626 -QSAPGHAFAPDSPWQHEMEDNFPYVETEDQMLAIDAVKADM-EKPSPMDRVVVGDVGYG 683
Query: 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 375
KTEVA+RA F V G+Q +VL PT +LA+QH ER + +P + + LSRF S +E
Sbjct: 684 KTEVAVRAAFKAVQDGRQVVVLVPTTLLAQQHLSTFEERMAGFP-VTIKGLSRFTSPSES 742
Query: 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVL 435
+E L + G ++I++GTH LL + V + NLGL++VDEEQRFGV+ KE I + + VDVL
Sbjct: 743 KEILKGLADGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVL 802
Query: 436 TLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQV 495
T+SATPIPRTL +++ G R+ S I TPP +R PI T++ A ++V +AI+ EL R GQV
Sbjct: 803 TMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQVAAAIRRELLRDGQV 862
Query: 496 FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555
FYV ++ +E+ L++ P I +AHGQ LE+T++ F +L+CT IVE
Sbjct: 863 FYVHNKVSDIEKKARELRELVPEARIVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVE 922
Query: 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA 615
+GLDI NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP + L++ + +RLA
Sbjct: 923 TGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTENSYDRLAT 982
Query: 616 LEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDE 671
+ + +LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D
Sbjct: 983 IAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADG 1042
Query: 672 HCVISVPY--KSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESL 728
+ K ++ID+ ++ +P +YIN +E+ + A A ++D+ ++ E +
Sbjct: 1043 KVADATEQGPKEIRIDLPVDAHIPEDYINSERLRLEVYRKLAASANDKDLALVV---EEM 1099
Query: 729 RRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMK----TNMNKKVFKMMIDS 784
+ ++G P+ ++ LL +R +A G++ I G + + T+ + K + S
Sbjct: 1100 KDRFGPVPHEVKRLLAVSRLRHLARATGLSDIGVQGTRIKLHPVELTDSKQVRLKRLAPS 1159
Query: 785 MTSEVHRNSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
T ++ EG ++ + L ++ +LL W+ +AE++
Sbjct: 1160 ATYRAAAKAIQLPFPKEGAKVTDKQLRDV---ELLQWVADFIAEMF 1202
>gi|269926461|ref|YP_003323084.1| transcription-repair coupling factor [Thermobaculum terrenum ATCC
BAA-798]
gi|269790121|gb|ACZ42262.1| transcription-repair coupling factor [Thermobaculum terrenum ATCC
BAA-798]
Length = 1150
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 255/622 (40%), Positives = 374/622 (60%), Gaps = 17/622 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDST-VPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ G YVVH G+ K+VG +V + S+ EY+ +EYA G +PV Q R+
Sbjct: 480 LQPGSYVVHVDHGVAKYVG---NVMRGSSGAEREYLVLEYAGGDRLYVPVDQIDRIS--- 533
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
P LS+L T W R K + K A ++ +L++LY R K + P N
Sbjct: 534 --PYIGGGEPALSRLG-TADWARTKRRAKKAADQLAKELLQLYAAREIAKGHSFSPDNEL 590
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF + FPY T DQ A DV+ D+ E PMDRLICGDVG+GKTEVALRA F V+
Sbjct: 591 HKEFESAFPYVETDDQLAAIEDVKADM-ESPKPMDRLICGDVGYGKTEVALRAAFKAVAD 649
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ VL PT VLA QH++ RF+ + I+V +LSR ++K E+++ L+ ++ G+++I+
Sbjct: 650 GKQVAVLVPTTVLALQHYETFRSRFNPF-GIRVEMLSRLRTKKERDQVLEDLQKGNVDIV 708
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH++L VV+ +LGL++VDEEQRFGVK KE + + VDVLTL+ATPIPRTL +AL
Sbjct: 709 IGTHTILQKNVVFKDLGLVIVDEEQRFGVKHKETLKQIRTQVDVLTLTATPIPRTLQMAL 768
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
+G RD S+I T P +RLP+ T++ + + +I EL+RGGQVFYV R++ + +
Sbjct: 769 SGVRDMSVIETAPEDRLPVYTYIVPKNDSIIRDSIIRELERGGQVFYVHNRVQDIYKVAH 828
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
LQ+ P I +AHGQ +QLE+ M F +L+CT I+ESGLDI NANT+IV D
Sbjct: 829 KLQEMVPEARITVAHGQMPEQQLEQVMLDFMHHHYDVLVCTTIIESGLDIPNANTLIVDD 888
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
GLAQLYQLRGRVGR+ A+AYL Y + +++ A +RL A+ E +LG GF++A
Sbjct: 889 ATHMGLAQLYQLRGRVGRSSNRAYAYLMYRPDARMTEDAQKRLEAISEATQLGAGFRVAM 948
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
KD+ IRG G G +Q+G V +G++L+ +M+ ++ ++ IS P +V ID+ I
Sbjct: 949 KDLEIRGAGNFLGPEQSGHVYAIGLELYTQMIERAVQELRTGQPISEP-PAVTIDLPIPA 1007
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+P Y++ + + + A+ L +R ++G P L+K + ++
Sbjct: 1008 LIPEHYVSDRDTRIRLYRRL--ASTSTARELRSMESEMRDRFGPLPEEAINLIKLIDLKI 1065
Query: 751 MAADIGITKIYASGKMVGMKTN 772
+AA G+T I A+ V +KT+
Sbjct: 1066 VAAKAGVTAIRAADNEVIIKTD 1087
>gi|307276446|ref|ZP_07557569.1| transcription-repair coupling factor [Enterococcus faecalis TX2134]
gi|306506926|gb|EFM76073.1| transcription-repair coupling factor [Enterococcus faecalis TX2134]
Length = 1189
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 501 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 558
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 559 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 614
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 615 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 673
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 674 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 732
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 733 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 792
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 793 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 852
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 853 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 912
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 913 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 972
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 973 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1031
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1032 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1088
>gi|307278656|ref|ZP_07559726.1| transcription-repair coupling factor [Enterococcus faecalis TX0860]
gi|306504716|gb|EFM73916.1| transcription-repair coupling factor [Enterococcus faecalis TX0860]
Length = 1189
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 501 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 558
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 559 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 614
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 615 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 673
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 674 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 732
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 733 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 792
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 793 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 852
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 853 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 912
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 913 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 972
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 973 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1031
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1032 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1088
>gi|289433569|ref|YP_003463441.1| transcription-repair coupling factor [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|289169813|emb|CBH26351.1| transcription-repair coupling factor [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 1178
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 256/623 (41%), Positives = 379/623 (60%), Gaps = 28/623 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L+ GDYVVH GI ++VG++ D+ + V +Y+ + Y G KL PV Q
Sbjct: 494 RIQSYSELKVGDYVVHINHGIARYVGMETLDI---NGVHKDYLLLVY-QGEDKLFIPVDQ 549
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L + + E K PR L+KL W+R K K + ++Q + DL++LY R +K
Sbjct: 550 LD--LVQKYVGAEGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 264 PY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ P EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALR
Sbjct: 606 AFSPDEEMQREFEDAFPYQETDDQLRSIAEIKKDM-ERPRPMDRLLVGDVGYGKTEVALR 664
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +
Sbjct: 665 AAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGM 723
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K G ++I+VGTH LL V Y++LGLL+VDEEQRFGV KEKI + +DVLTL+ATPI
Sbjct: 724 KSGTVDIVVGTHRLLSKDVEYHDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPI 783
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R+
Sbjct: 784 PRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRV 843
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + D + P +AIAHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 844 ETITQKADEISAMVPDARVAIAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPN 903
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+ VQD + GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E EL
Sbjct: 904 VNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTEL 963
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ K E VP
Sbjct: 964 GSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP-- 1021
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTE---SLRRQYGKEPY 737
V+IDI + +P YI +EM ++I L F E + ++G+ P
Sbjct: 1022 -VEIDIQADAYIPEYYITDGRQKIEMYKRF-----RNIEGLNDFEELQSDMIDRFGEYPE 1075
Query: 738 SMEILLKKLYVRRMAADIGITKI 760
+E L ++ A ++GI +
Sbjct: 1076 EVEYLFTMTELKVHALEVGIESV 1098
>gi|257424615|ref|ZP_05601043.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257427281|ref|ZP_05603682.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257429918|ref|ZP_05606304.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus 68-397]
gi|257435524|ref|ZP_05611574.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M876]
gi|282903089|ref|ZP_06310981.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus C160]
gi|282904878|ref|ZP_06312738.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282907825|ref|ZP_06315663.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282910141|ref|ZP_06317947.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282913331|ref|ZP_06321122.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M899]
gi|282918284|ref|ZP_06326024.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus C427]
gi|282923035|ref|ZP_06330721.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus C101]
gi|283957293|ref|ZP_06374751.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus A017934/97]
gi|293500380|ref|ZP_06666232.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 58-424]
gi|293509318|ref|ZP_06668034.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M809]
gi|293515907|ref|ZP_06670597.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M1015]
gi|297591586|ref|ZP_06950223.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MN8]
gi|384865902|ref|YP_005746098.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus TCH60]
gi|417888539|ref|ZP_12532647.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21195]
gi|418565540|ref|ZP_13129940.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21264]
gi|418596758|ref|ZP_13160310.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21342]
gi|418601103|ref|ZP_13164546.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21345]
gi|257272642|gb|EEV04762.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257275932|gb|EEV07400.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257279434|gb|EEV10029.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus 68-397]
gi|257285161|gb|EEV15278.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M876]
gi|282314554|gb|EFB44941.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus C101]
gi|282317850|gb|EFB48219.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus C427]
gi|282322802|gb|EFB53122.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M899]
gi|282325989|gb|EFB56295.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282328301|gb|EFB58576.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282331995|gb|EFB61504.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282596515|gb|EFC01475.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus C160]
gi|283791217|gb|EFC30027.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus A017934/97]
gi|290921315|gb|EFD98373.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M1015]
gi|291096340|gb|EFE26600.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 58-424]
gi|291467863|gb|EFF10373.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus M809]
gi|297575455|gb|EFH94172.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MN8]
gi|312436407|gb|ADQ75478.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus TCH60]
gi|341855034|gb|EGS95892.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21195]
gi|371973192|gb|EHO90551.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21264]
gi|374396698|gb|EHQ67925.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21342]
gi|374399848|gb|EHQ70981.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21345]
Length = 1168
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 391/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQIHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|146298962|ref|YP_001193553.1| transcription-repair coupling factor [Flavobacterium johnsoniae
UW101]
gi|146153380|gb|ABQ04234.1| transcription-repair coupling factor [Flavobacterium johnsoniae
UW101]
Length = 1121
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 246/630 (39%), Positives = 371/630 (58%), Gaps = 24/630 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
+L GDYV H GIGKF G+ K V+ + I+ V YAD + + +Y
Sbjct: 437 ALSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLV---YADNDIVYVSIHSLHKISKY 493
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
N + T P + KL + AW+ K K K ++ + +L++LY R +K + P +
Sbjct: 494 NGKDGT--PPKIYKLG-SNAWKVLKQKTKARVKHIAFNLIQLYAKRRLEKGFQFAPDSYL 550
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E + F YE TPDQ K+ +V+ D+ E + PMDRL+CGDVGFGKTEVA+RA F V
Sbjct: 551 QNELESSFIYEDTPDQMKSTQEVKADM-ESDRPMDRLVCGDVGFGKTEVAIRAAFKAVDN 609
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
KQ VL PT +LA QH+ SER P + +G L+RF++ +K + L + G L+I+
Sbjct: 610 SKQVAVLVPTTILAYQHYRTFSERLKDMP-VSIGYLNRFRTAKQKTQTLKDLAEGKLDIV 668
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ VV+ +LGLL+VDEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L
Sbjct: 669 IGTHQLVNKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPIPRTLQFSL 728
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S+I+TPPP R PI+T++ F++E + AI YE+ R GQVF++ RI+ ++E
Sbjct: 729 MAARDLSVITTPPPNRYPIETNVVGFNEEIIRDAISYEIQRNGQVFFINNRIENIKEVAG 788
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P + I HGQ +LEE M F G +L+ T I+ESGLD+ NANTI + +
Sbjct: 789 MIQRLVPNARVGIGHGQMDGAKLEELMLGFMNGDFDVLVATTIIESGLDVPNANTIFINN 848
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A Y P S +++ A +R+ ALE+ ELG GF +A
Sbjct: 849 ANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSSMTEDARKRIQALEQFSELGSGFNIAM 908
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV----------DEHCVISVPY- 679
KD+ IRG G + G +Q+G + +G D + +++ E++ ++ +E+ + + Y
Sbjct: 909 KDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYPEENDIDTKEYV 968
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
K +QID + P EYIN++ + + NE A +D L +F L ++G P
Sbjct: 969 KDIQIDADFELLFPDEYINNVSERLVLYNEL--GAIKDEAGLQEFERKLIDRFGPLPKQA 1026
Query: 740 EILLKKLYVRRMAADIGITK-IYASGKMVG 768
LL + ++ +A +GI K + GKM+G
Sbjct: 1027 TALLNSIRIKWIATKVGIEKLVLKQGKMIG 1056
>gi|305665487|ref|YP_003861774.1| transcription-repair coupling factor [Maribacter sp. HTCC2170]
gi|88710243|gb|EAR02475.1| transcription-repair coupling factor [Maribacter sp. HTCC2170]
Length = 1172
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 245/629 (38%), Positives = 375/629 (59%), Gaps = 24/629 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYV H GIGKF G+ K DV+ I+ + Y D + + ++N
Sbjct: 484 LEVGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLM---YGDRDILYVSIHSLHKISKFN 540
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ P+ + KL + AW++ K K K ++++ DL+++Y R +K Y P +
Sbjct: 541 -GKDGAAPK-IYKLG-SAAWKKLKQKTKSRVKQIAFDLIKVYAKRRLEKGFQYDPDSYLQ 597
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E A F YE TPDQ KA DV++D+ E E PMDRL+CGDVGFGKTEVA+RA F V G
Sbjct: 598 LELEASFIYEDTPDQGKATEDVKKDM-ESERPMDRLVCGDVGFGKTEVAIRAAFKAVDNG 656
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT +LA QH SER + P + V L+RF++ EK E L+ +++G ++II+
Sbjct: 657 KQVAILVPTTILAYQHHRTFSERLKELP-VSVDYLNRFRTAKEKRETLERLENGKVDIII 715
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH L+ V + +LGLL+VDEEQ+FGV K+K+ S K +VDVLTL+ATPIPRTL +L
Sbjct: 716 GTHQLVNKNVKFKDLGLLIVDEEQKFGVSVKDKLKSIKENVDVLTLTATPIPRTLQFSLM 775
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD S+I+TPPP R PI++++ F++E + A+ YE+ RGGQ+F++ RI+ ++E
Sbjct: 776 AARDLSVINTPPPNRYPIESNVIRFNEEIIRDAVSYEIQRGGQIFFIHNRIENIKEVAGM 835
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQ+ P I I HGQ+ ++LE M F G +L+ T IVESGLD+ NANTI + +
Sbjct: 836 LQRLVPDAKIGIGHGQKDGKKLEALMLAFMNGEFDVLVSTTIVESGLDVTNANTIFINNA 895
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+ L+Q+RGRVGR++K+A Y P +++++A +R+ ALE+ ELG GF +A K
Sbjct: 896 NNFGLSDLHQMRGRVGRSNKKAFCYFITPPYEVMTNEARKRIQALEQFTELGSGFNIAMK 955
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS-----------VPYK 680
D+ IRG G + G +Q+G + +G D + ++L E++ ++ E+ V K
Sbjct: 956 DLEIRGAGDLLGGEQSGFINEIGFDAYQKILAEAIDELKENEFKELYDEVEGHHEKVFVK 1015
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
QID + P +Y+N++ + + E +++ L +F L ++G+ P +
Sbjct: 1016 ETQIDTDFELLFPDDYVNNISERLSLYTELNSIKDEE--ALQKFELELVDRFGELPTPVV 1073
Query: 741 ILLKKLYVRRMAADIGITK-IYASGKMVG 768
LL + ++ +A IG+ K + K++G
Sbjct: 1074 DLLNSVRIKWIANTIGLEKVVMKQNKLIG 1102
>gi|384512165|ref|YP_005707258.1| transcription-repair coupling factor [Enterococcus faecalis OG1RF]
gi|327534054|gb|AEA92888.1| transcription-repair coupling factor [Enterococcus faecalis OG1RF]
Length = 1189
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 501 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 558
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 559 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 614
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 615 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 673
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 674 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 732
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 733 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 792
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 793 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 852
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 853 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 912
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 913 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 972
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 973 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1031
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1032 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1088
>gi|404498387|ref|YP_006722493.1| transcription-repair coupling factor [Geobacter metallireducens
GS-15]
gi|418067074|ref|ZP_12704426.1| transcription-repair coupling factor [Geobacter metallireducens RCH3]
gi|78195985|gb|ABB33752.1| transcription-repair coupling factor [Geobacter metallireducens
GS-15]
gi|373559435|gb|EHP85732.1| transcription-repair coupling factor [Geobacter metallireducens RCH3]
Length = 1158
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 252/603 (41%), Positives = 367/603 (60%), Gaps = 24/603 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDY+VH GIG + G++ S +++ +EYA G LPV + + ++ RY
Sbjct: 497 LKPGDYMVHLDHGIGIYRGLQH--ISLSGCAGDFILLEYAGGDKLYLPVDRLN-LVQRY- 552
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAI 271
+ E PR + KL T+ WE+ K K + A+Q+M +L+++Y R L + P +
Sbjct: 553 VGAEGLEPR-VDKLGGTS-WEKAKGKARAAVQEMAGELLQIYAARQLHEGHAFSPPDDLY 610
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A F YE T DQ A +DV D+T + PMDRL+CGDVG+GKTEVA+R F V G
Sbjct: 611 REFEASFAYEETSDQMSAIMDVIGDMTSAK-PMDRLVCGDVGYGKTEVAMRGAFKAVMDG 669
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT VLA+QH + R YP + V +LSRF++ E++E L+ +K G +++I+
Sbjct: 670 KQVAVLVPTTVLAQQHLETFKARLGAYP-VTVEMLSRFRTPKEQKEILEKVKKGAIDVII 728
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL S V + +LGLL+VDEEQRFGV KEK+ +K VD+LTL+ATPIPRTLY+++
Sbjct: 729 GTHRLLQSDVTFKDLGLLIVDEEQRFGVTHKEKLKKYKAVVDILTLTATPIPRTLYMSMM 788
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP +RL +KT ++ S + + A+ EL RGGQ+F+V R++ + +
Sbjct: 789 GIRDLSIIDTPPVDRLAVKTFVARSSDDLIREAVMRELRRGGQIFFVHNRVQSIMNWAEH 848
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P IA+ HGQ +LE+ M F G +L+CT I+ESGLDI NANT+I+
Sbjct: 849 LRRIVPEAKIAVGHGQMDEGELEKVMLGFMHGETNLLLCTTIIESGLDIPNANTLIIDRA 908
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGLAQLYQLRGRVGR+ + A+AYL P + +S A ERL ++E ELG GF+LA
Sbjct: 909 DTFGLAQLYQLRGRVGRSKQRAYAYLLIPGEGAISSDARERLKIIQELTELGAGFRLATH 968
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQIDININ 689
D+ IRG G I G +Q+G++ VG DL+ E+L E++ K +E P +I++ I
Sbjct: 969 DLEIRGAGDILGAKQSGNIAAVGFDLYTELLEEAIQNLKGEERLERVEP----EINLRIP 1024
Query: 690 PRLPSEYINHLENPM---EMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
+P +Y+ + + + +AE E D + L ++GK P + LL+ +
Sbjct: 1025 AFVPEDYVREPNQRLIIYKKLTQAESEEEVD-----EVMAELVDRFGKLPLAATYLLEVM 1079
Query: 747 YVR 749
+R
Sbjct: 1080 KLR 1082
>gi|375292760|ref|YP_005127299.1| transcription-repair coupling factor [Corynebacterium diphtheriae
INCA 402]
gi|376287389|ref|YP_005159955.1| transcription-repair coupling factor [Corynebacterium diphtheriae
BH8]
gi|371582431|gb|AEX46097.1| transcription-repair coupling factor [Corynebacterium diphtheriae
INCA 402]
gi|371584723|gb|AEX48388.1| transcription-repair coupling factor [Corynebacterium diphtheriae
BH8]
Length = 1266
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 257/706 (36%), Positives = 410/706 (58%), Gaps = 41/706 (5%)
Query: 147 YKVDPYSLRSGDYVVHKKVGIGKFVGIKFDV--QKDSTVPIEYVFIEYADGMAKLPVKQ- 203
++VDP +L++GDYVVH+ GIG+F+ + V D T EY+ +EYA P Q
Sbjct: 512 HRVDPLALKTGDYVVHETHGIGRFLKMTERVIQSGDETSRREYIVLEYAASKRGQPADQL 571
Query: 204 -----ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRL 258
+ ML +Y ++P TLSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 572 YVPMDSLDMLSKYV---GGEKP-TLSKMGGSD-WKNTKKKARAAVREIAGELVELYAKR- 625
Query: 259 KQKRPPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFG 315
Q P + P +P E FPY T DQ A V+ D+ E+ +PMDR++ GDVG+G
Sbjct: 626 -QSAPGHAFAPDSPWQHEMEDNFPYVETEDQMLAIDAVKADM-EKPSPMDRVVVGDVGYG 683
Query: 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 375
KTEVA+RA F V G+Q +VL PT +LA+QH ER + +P + + LSRF S +E
Sbjct: 684 KTEVAVRAAFKAVQDGRQVVVLVPTTLLAQQHLSTFEERMAGFP-VTIKGLSRFTSPSES 742
Query: 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVL 435
+E L + G ++I++GTH LL + V + NLGL++VDEEQRFGV+ KE I + + VDVL
Sbjct: 743 KEILKGLADGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVL 802
Query: 436 TLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQV 495
T+SATPIPRTL +++ G R+ S I TPP +R PI T++ A ++V +AI+ EL R GQV
Sbjct: 803 TMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQVAAAIRRELLRDGQV 862
Query: 496 FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555
FYV ++ +E+ L++ P I +AHGQ LE+T++ F +L+CT IVE
Sbjct: 863 FYVHNKVSDIEKKARELRELVPEARIVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVE 922
Query: 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA 615
+GLDI NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP + L++ + +RLA
Sbjct: 923 TGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTENSYDRLAT 982
Query: 616 LEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDE 671
+ + +LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D
Sbjct: 983 IAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADG 1042
Query: 672 HCVISVPY--KSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESL 728
+ K ++ID+ ++ +P +YIN +E+ + A A ++D+ ++ E +
Sbjct: 1043 KVADATEQGPKEIRIDLPVDAHIPEDYINSERLRLEVYRKLAASANDKDLALVV---EEM 1099
Query: 729 RRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMK----TNMNKKVFKMMIDS 784
+ ++G P+ ++ LL +R +A G++ I G + + T+ + K + S
Sbjct: 1100 KDRFGPVPHEVKRLLAVSRLRHLARATGLSDIGVQGTRIKLHPVELTDSKQVRLKRLAPS 1159
Query: 785 MTSEVHRNSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
T ++ EG ++ + L ++ +LL W+ +AE++
Sbjct: 1160 ATYRAAAKAIQLPFPKEGAKVTDKQLRDV---ELLQWVADFIAEMF 1202
>gi|312904634|ref|ZP_07763789.1| transcription-repair coupling factor [Enterococcus faecalis TX0635]
gi|422687624|ref|ZP_16745800.1| transcription-repair coupling factor [Enterococcus faecalis TX0630]
gi|422733279|ref|ZP_16789600.1| transcription-repair coupling factor [Enterococcus faecalis TX0645]
gi|310631986|gb|EFQ15269.1| transcription-repair coupling factor [Enterococcus faecalis TX0635]
gi|315160777|gb|EFU04794.1| transcription-repair coupling factor [Enterococcus faecalis TX0645]
gi|315579376|gb|EFU91567.1| transcription-repair coupling factor [Enterococcus faecalis TX0630]
Length = 1189
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 501 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 558
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 559 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 614
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 615 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 673
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 674 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 732
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 733 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 792
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 793 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 852
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 853 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 912
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 913 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 972
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 973 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1031
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1032 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1088
>gi|424755707|ref|ZP_18183568.1| transcription-repair coupling factor [Enterococcus faecalis R508]
gi|402408992|gb|EJV41438.1| transcription-repair coupling factor [Enterococcus faecalis R508]
Length = 1189
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 501 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 558
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 559 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 614
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 615 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 673
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 674 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 732
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 733 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 792
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 793 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 852
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 853 IERKVEELQALVPDARIAYAHGQMTEIQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 912
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 913 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 972
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 973 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1031
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1032 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1088
>gi|168213408|ref|ZP_02639033.1| transcription-repair coupling factor [Clostridium perfringens CPE
str. F4969]
gi|170715029|gb|EDT27211.1| transcription-repair coupling factor [Clostridium perfringens CPE
str. F4969]
Length = 1168
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 245/643 (38%), Positives = 397/643 (61%), Gaps = 20/643 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH GIG + GIK +VQ +Y+ IEY+ G +PV+Q ++ +Y
Sbjct: 501 LKPGDYVVHVNSGIGVYKGIKQIEVQGHKR---DYLDIEYSKGDKLYVPVEQLD-LVQKY 556
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +++ P+ +SKL W++ K K + +I + DL++LY R K + K+
Sbjct: 557 -IGSDSASPK-ISKLG-GNEWQKAKAKVRKSINDIAGDLVKLYAERSTVKGYKFSKDTQW 613
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FPYE TPDQ A D++ D+ E MDRL+CGDVG+GKTEVA+RA F V
Sbjct: 614 QKQFEDEFPYEETPDQLSAIEDIKSDM-ETNKVMDRLLCGDVGYGKTEVAIRAAFKAVME 672
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH+ + +RF+ +P I + ++SRF++K ++ E L +K G+++I+
Sbjct: 673 GKQVAFLVPTTILAEQHYKNMKKRFAGFP-ITIDMISRFRTKKQQTETLKALKEGNVDIL 731
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ + + +LGLL+VDEEQRFGV QKEKI SFK +VDVLTLSATPIPRTL+++L
Sbjct: 732 IGTHRLVSKDIQFKDLGLLIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSL 791
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG RD S+I TPP R PI+T++ + + + AI E++R GQV++V R++ ++E +
Sbjct: 792 TGVRDISVIETPPENRYPIQTYVVEQNDQLIRDAILREINRDGQVYFVHNRVESIQEVAN 851
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
++Q+ P + HGQ RQLE M F + +L+CT+I+E+G+DI N NT+IV D
Sbjct: 852 YIQELVPECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVND 911
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR++K A+AY Y +L++ A +RL AL++ ELG GF++A
Sbjct: 912 ADKMGLSQLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAM 971
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G Q G + +G DL+ ML +++ K+ + + P ++ +D+ ++
Sbjct: 972 RDLEIRGAGNMMGSAQHGHMAAIGYDLYCRMLEDTI-KIVKGEIEREPVETT-VDLKVDA 1029
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+PS YI +E+ + ++ + ++ E L ++ P ++ L+ Y++
Sbjct: 1030 FIPSSYIKDEIQKIEVYKKIAAIENEEDYEYVR--EELEDRFSNIPNTVYNLMDIAYIKS 1087
Query: 751 MAADIGITKIYASGK----MVGMKTNMNKKVFKMMIDSMTSEV 789
A + I +I + + + +K++FK++++ ++
Sbjct: 1088 KAKLLNIEEIKEKNEDIIFIFESRERTDKRIFKVLLEEYKDDI 1130
>gi|258446110|ref|ZP_05694271.1| transcription-repair coupling factor [Staphylococcus aureus A6300]
gi|257855087|gb|EEV78029.1| transcription-repair coupling factor [Staphylococcus aureus A6300]
Length = 1168
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTSKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTENAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|433445435|ref|ZP_20409842.1| transcription-repair coupling factor [Anoxybacillus flavithermus
TNO-09.006]
gi|432001083|gb|ELK21968.1| transcription-repair coupling factor [Anoxybacillus flavithermus
TNO-09.006]
Length = 1170
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 237/555 (42%), Positives = 358/555 (64%), Gaps = 12/555 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRMLYRYN 212
L+ GDYVVH GIGK++GI + + + V +Y+ I+Y + +PV Q L +
Sbjct: 500 LKVGDYVVHVNHGIGKYLGI--ETLEINGVHKDYIHIQYQGNDTLYVPVDQMD--LVQKY 555
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K P+ + KL T W++ K K + ++Q + DLM+LY R K + P N
Sbjct: 556 VGSEGKEPK-IYKLGGT-EWKKVKKKVESSVQDIAEDLMKLYAEREASKGYAFSPDNEMQ 613
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A FPY+ T DQ ++ +++RD+ E E PMDRL+CGDVG+GKTEVALRA F + G
Sbjct: 614 REFEAAFPYQETEDQLRSIREIKRDM-ESERPMDRLLCGDVGYGKTEVALRAAFKAIMDG 672
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ V ERF YP I VGLLSRF++K ++ E + +K G +++++
Sbjct: 673 KQVAFLVPTTILAQQHYETVRERFQGYP-INVGLLSRFRTKKQQTETIQGLKDGTIDMVI 731
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIPRTL+++L
Sbjct: 732 GTHRLLSKDVSFKDLGLLIIDEEQRFGVAHKEKIKQLKTNIDVLTLTATPIPRTLHMSLI 791
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T++ +S V AI+ E+ RGGQVF++ R++ ++ +
Sbjct: 792 GVRDLSVIETPPENRFPVQTYVMEYSPIIVREAIEREMARGGQVFFLYNRVEDIDRKAEE 851
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+ P +A AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D
Sbjct: 852 ISALVPDARVAYAHGRMSEHELEAVMLAFLEGQYDVLVSTTIIETGVDIPNVNTLIVYDA 911
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +
Sbjct: 912 DKMGLSQLYQLRGRVGRSNRIAYAYFTYRKDKVLNEIAEKRLQAIKEFTELGSGFKIAMR 971
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + +VG +L+ +ML E++ + P++ V+ID+ ++
Sbjct: 972 DLSIRGAGNLLGAQQHGFIDSVGFELYSQMLKEAIEE-KRGTKQEKPFE-VEIDLEVDAY 1029
Query: 692 LPSEYINHLENPMEM 706
+P YI++ + +EM
Sbjct: 1030 IPEHYISNEQQKIEM 1044
>gi|169343325|ref|ZP_02864335.1| transcription-repair coupling factor [Clostridium perfringens C str.
JGS1495]
gi|169298623|gb|EDS80704.1| transcription-repair coupling factor [Clostridium perfringens C str.
JGS1495]
Length = 1168
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 245/643 (38%), Positives = 397/643 (61%), Gaps = 20/643 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH GIG + GIK +VQ +Y+ IEY+ G +PV+Q ++ +Y
Sbjct: 501 LKPGDYVVHVNSGIGVYKGIKQIEVQGHKR---DYLDIEYSKGDKLYVPVEQLD-LVQKY 556
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +++ P+ +SKL W++ K K + +I + DL++LY R K + K+
Sbjct: 557 -IGSDSASPK-ISKLG-GNEWQKAKAKVRKSINDIAGDLVKLYAERSTVKGYKFSKDTQW 613
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FPYE TPDQ A D++ D+ E MDRL+CGDVG+GKTEVA+RA F V
Sbjct: 614 QKQFEDEFPYEETPDQLSAIEDIKSDM-ETNKVMDRLLCGDVGYGKTEVAIRAAFKAVME 672
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH+ + +RF+ +P I + ++SRF++K ++ E L +K G+++I+
Sbjct: 673 GKQVAFLVPTTILAEQHYKNMKKRFAGFP-ITIDMISRFRTKKQQTETLKALKEGNVDIL 731
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ + + +LGLL+VDEEQRFGV QKEKI SFK +VDVLTLSATPIPRTL+++L
Sbjct: 732 IGTHRLVSKDIQFKDLGLLIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSL 791
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG RD S+I TPP R PI+T++ + + + AI E++R GQV++V R++ ++E +
Sbjct: 792 TGVRDISVIETPPENRYPIQTYVVEQNDQLIRDAILREINRDGQVYFVHNRVESIQEVAN 851
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
++Q+ P + HGQ RQLE M F + +L+CT+I+E+G+DI N NT+IV D
Sbjct: 852 YIQELVPECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVND 911
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR++K A+AY Y +L++ A +RL AL++ ELG GF++A
Sbjct: 912 ADKMGLSQLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAM 971
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G Q G + +G DL+ ML +++ K+ + + P ++ +D+ ++
Sbjct: 972 RDLEIRGAGNMMGSAQHGHMAAIGYDLYCRMLEDTI-KIVKGEIEREPVETT-VDLKVDA 1029
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+PS YI +E+ + ++ + ++ E L ++ P ++ L+ Y++
Sbjct: 1030 FIPSSYIKDEIQKIEVYKKIAAIENEEDYEYVR--EELEDRFSNIPNTVYNLMDIAYIKS 1087
Query: 751 MAADIGITKIYASGK----MVGMKTNMNKKVFKMMIDSMTSEV 789
A + I +I + + + +K++FK++++ ++
Sbjct: 1088 KAKLLNIEEIKEKNEDIIFIFESRERTDKRIFKVLLEEYKDDI 1130
>gi|110799729|ref|YP_697172.1| transcription-repair coupling factor [Clostridium perfringens ATCC
13124]
gi|110674376|gb|ABG83363.1| transcription-repair coupling factor [Clostridium perfringens ATCC
13124]
Length = 1162
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 245/643 (38%), Positives = 397/643 (61%), Gaps = 20/643 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH GIG + GIK +VQ +Y+ IEY+ G +PV+Q ++ +Y
Sbjct: 495 LKPGDYVVHVNSGIGVYKGIKQIEVQGHKR---DYLDIEYSKGDKLYVPVEQLD-LVQKY 550
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +++ P+ +SKL W++ K K + +I + DL++LY R K + K+
Sbjct: 551 -IGSDSASPK-ISKLG-GNEWQKAKAKVRKSINDIAGDLVKLYAERSTVKGYKFSKDTQW 607
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FPYE TPDQ A D++ D+ E MDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QKQFEDEFPYEETPDQLSAIEDIKSDM-ETNKVMDRLLCGDVGYGKTEVAIRAAFKAVME 666
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH+ + +RF+ +P I + ++SRF++K ++ E L +K G+++I+
Sbjct: 667 GKQVAFLVPTTILAEQHYKNMKKRFAGFP-ITIDMISRFRTKKQQTETLKALKEGNVDIL 725
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ + + +LGLL+VDEEQRFGV QKEKI SFK +VDVLTLSATPIPRTL+++L
Sbjct: 726 IGTHRLVSKDIQFKDLGLLIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSL 785
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG RD S+I TPP R PI+T++ + + + AI E++R GQV++V R++ ++E +
Sbjct: 786 TGVRDISVIETPPENRYPIQTYVVEQNDQLIRDAILREINRDGQVYFVHNRVESIQEVAN 845
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
++Q+ P + HGQ RQLE M F + +L+CT+I+E+G+DI N NT+IV D
Sbjct: 846 YIQELVPECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVND 905
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR++K A+AY Y +L++ A +RL AL++ ELG GF++A
Sbjct: 906 ADKMGLSQLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAM 965
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G Q G + +G DL+ ML +++ K+ + + P ++ +D+ ++
Sbjct: 966 RDLEIRGAGNMMGSAQHGHMAAIGYDLYCRMLEDTI-KIVKGEIEREPVETT-VDLKVDA 1023
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+PS YI +E+ + ++ + ++ E L ++ P ++ L+ Y++
Sbjct: 1024 FIPSSYIKDEIQKIEVYKKIAAIENEEDYEYVR--EELEDRFSNIPNTVYNLMDIAYIKS 1081
Query: 751 MAADIGITKIYASGK----MVGMKTNMNKKVFKMMIDSMTSEV 789
A + I +I + + + +K++FK++++ ++
Sbjct: 1082 KAKLLNIEEIKEKNEDIIFIFESRERTDKRIFKVLLEEYKDDI 1124
>gi|399030726|ref|ZP_10731057.1| transcription-repair coupling factor Mfd [Flavobacterium sp. CF136]
gi|398071125|gb|EJL62395.1| transcription-repair coupling factor Mfd [Flavobacterium sp. CF136]
Length = 1120
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 246/630 (39%), Positives = 372/630 (59%), Gaps = 24/630 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
+L GDYV H GIGKF G+ K V+ + I+ V YAD + + +Y
Sbjct: 437 ALSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLV---YADNDIVYVSIHSLHKISKY 493
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
N + T P + KL + AW+ K K K ++ + +L++LY R +K + P +
Sbjct: 494 NGKDGT--PPKIYKLG-SNAWKILKQKTKARVKHIAFNLIQLYAKRRLEKGFQFAPDSYL 550
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E + F YE TPDQ K+ +V+ D+ E + PMDRL+CGDVGFGKTEVA+RA F V
Sbjct: 551 QNELESSFIYEDTPDQTKSTQEVKADM-ESDRPMDRLVCGDVGFGKTEVAIRAAFKAVDN 609
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
KQ VL PT +LA QH+ +ER P + VG L+RF++ +K + L + G L+I+
Sbjct: 610 SKQVAVLVPTTILAYQHYRTFTERLKDMP-VSVGYLNRFRTAKQKAQTLKDLAEGKLDIV 668
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ VV+ +LGLL+VDEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L
Sbjct: 669 IGTHQLVNKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPIPRTLQFSL 728
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S+I+TPPP R PI+T++ +F++E + AI YE+ R GQVF++ RI+ ++E
Sbjct: 729 MAARDLSVITTPPPNRYPIETNVVSFNEEIIRDAISYEIQRNGQVFFINNRIENIKEVAG 788
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P + I HGQ +LEE M F G +L+ T I+ESGLD+ NANTI + +
Sbjct: 789 MIQRLVPNARVGIGHGQMEGAKLEELMLGFMNGDFDVLVATTIIESGLDVPNANTIFINN 848
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A Y P S +++ A +R+ ALE+ ELG GF +A
Sbjct: 849 ANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSSMTEDARKRIQALEQFSELGSGFNIAM 908
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV----------DEHCVISVPY- 679
KD+ IRG G + G +Q+G + +G D + +++ E++ ++ +E+ + + Y
Sbjct: 909 KDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYPEENNIDTKEYV 968
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
K +QID + P EYIN++ + + NE A +D L +F L ++G P
Sbjct: 969 KDLQIDADFELLFPDEYINNVSERLVLYNEL--GAIKDEAGLQEFERKLIDRFGPLPKQA 1026
Query: 740 EILLKKLYVRRMAADIGITK-IYASGKMVG 768
LL + ++ +A +GI K + GKM+G
Sbjct: 1027 TALLNSIRIKWIATRVGIEKLVLKQGKMIG 1056
>gi|422347549|ref|ZP_16428460.1| transcription-repair coupling factor [Clostridium perfringens
WAL-14572]
gi|373223819|gb|EHP46163.1| transcription-repair coupling factor [Clostridium perfringens
WAL-14572]
Length = 1168
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 245/643 (38%), Positives = 397/643 (61%), Gaps = 20/643 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH GIG + GIK +VQ +Y+ IEY+ G +PV+Q ++ +Y
Sbjct: 501 LKPGDYVVHVNSGIGVYKGIKQIEVQGHKR---DYLDIEYSKGDKLYVPVEQLD-LVQKY 556
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +++ P+ +SKL W++ K K + +I + DL++LY R K + K+
Sbjct: 557 -IGSDSASPK-ISKLG-GNEWQKAKAKVRKSINDIAGDLVKLYAERSTVKGYKFSKDTQW 613
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FPYE TPDQ A D++ D+ E MDRL+CGDVG+GKTEVA+RA F V
Sbjct: 614 QKQFEDEFPYEETPDQLSAIEDIKSDM-EANKVMDRLLCGDVGYGKTEVAIRAAFKAVME 672
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH+ + +RF+ +P I + ++SRF++K ++ E L +K G+++I+
Sbjct: 673 GKQVAFLVPTTILAEQHYKNMKKRFAGFP-ITIDMISRFRTKKQQTETLKALKEGNVDIL 731
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ + + +LGLL+VDEEQRFGV QKEKI SFK +VDVLTLSATPIPRTL+++L
Sbjct: 732 IGTHRLVSKDIQFKDLGLLIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSL 791
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG RD S+I TPP R PI+T++ + + + AI E++R GQV++V R++ ++E +
Sbjct: 792 TGVRDISVIETPPENRYPIQTYVVEQNDQLIRDAILREINRDGQVYFVHNRVESIQEVAN 851
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
++Q+ P + HGQ RQLE M F + +L+CT+I+E+G+DI N NT+IV D
Sbjct: 852 YIQELVPECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVND 911
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR++K A+AY Y +L++ A +RL AL++ ELG GF++A
Sbjct: 912 ADKMGLSQLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAM 971
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G Q G + +G DL+ ML +++ K+ + + P ++ +D+ ++
Sbjct: 972 RDLEIRGAGNMMGSAQHGHMAAIGYDLYCRMLEDTI-KIVKGEIEREPVETT-VDLKVDA 1029
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+PS YI +E+ + ++ + ++ E L ++ P ++ L+ Y++
Sbjct: 1030 FIPSSYIKDEIQKIEVYKKIAAIENEEDYEYVR--EELEDRFSNIPNTVYNLMDIAYIKS 1087
Query: 751 MAADIGITKIYASGK----MVGMKTNMNKKVFKMMIDSMTSEV 789
A + I +I + + + +K++FK++++ ++
Sbjct: 1088 KAKLLNIEEIKEKNEDIIFIFESRERTDKRIFKVLLEEYKDDI 1130
>gi|222100017|ref|YP_002534585.1| Transcription-repair coupling factor [Thermotoga neapolitana DSM
4359]
gi|221572407|gb|ACM23219.1| Transcription-repair coupling factor [Thermotoga neapolitana DSM
4359]
Length = 895
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 255/637 (40%), Positives = 398/637 (62%), Gaps = 23/637 (3%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTV-PIEYVFIEYADGMAKLPVKQASRM 207
VD + G+ VVHK+ GI F G+ ++ S + +Y+ ++Y D + +PV++ R+
Sbjct: 245 VDIDEIEEGELVVHKEHGIAIFEGM---IRLKSVLGERDYLKLKYEDAVLYVPVEKIDRV 301
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK 267
P++ K R + W+R K + I+K V +L+ELYL R + + P
Sbjct: 302 HRYIGDPSQVKLDRL-----NRGRWKRTLKKVREDIEKRVRELVELYLKREEVRGTLLPG 356
Query: 268 NPAIAE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
+P + E FA FPY TPDQ+K +V DL+ E PMDRL+CGD G GKTEVALRA F
Sbjct: 357 DPELEEKFAETFPYIETPDQQKCIEEVLTDLSS-EKPMDRLLCGDAGVGKTEVALRAAFR 415
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
V +GKQ VL PT VLA+QH++ ER + ++V LL ++ E++E L+ +K G
Sbjct: 416 AVVSGKQVAVLVPTTVLARQHYENFKERLEPF-GVRVELLDSSRTLRERKEILEGLKKGE 474
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
+++++GTH+LL RV +++LGL+++DEEQ+FGV+QKEK ++SV+VL+LSATPIPRTL
Sbjct: 475 IDVVIGTHALLNERVEFSDLGLVIIDEEQKFGVEQKEKFKKMRLSVNVLSLSATPIPRTL 534
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
++AL+G +D S+I+ PPP R P+ +++ +++E V A+ E++RGGQV YV R++ L
Sbjct: 535 HMALSGMKDLSVINAPPPGRKPVHVYIAEYNEELVKGAVVREVNRGGQVIYVHNRVEELP 594
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
E ++ L++ FP + IA+AHG+ R +E+ + +F G I +L+CT I+E+G+DI NANT+
Sbjct: 595 EVLENLKRMFPELRIAMAHGKMSRRVMEKVVHEFYSGNIDVLLCTTIIENGVDIPNANTL 654
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
IV D ++GLAQLYQLRGRVGR+D+ A AY YP + ALERL L+ G G
Sbjct: 655 IVDDAHRYGLAQLYQLRGRVGRSDRRAFAYFLYPKG--VPKSALERLRVLKAHTGPGSGL 712
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 686
Q+A KDM +RG G + G +Q G++ ++G+ L+ E+L E+++KV + V +VQI+I
Sbjct: 713 QIAMKDMEMRGIGDVLGLEQHGNIISIGLKLYNEILRETVTKVKKKRVERK--HTVQIEI 770
Query: 687 NINPR---LPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
P +P +YI+ NP+E + + A+ + + + E +R ++G+ P +++L
Sbjct: 771 ENPPGRFFIPEDYIS---NPVERLRMYRRLASASEEGEIEEILEEMRDRFGEPPEEVKLL 827
Query: 743 LKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFK 779
L +R A+ +GI KI MV + N + K
Sbjct: 828 LDYFRIRIRASKLGIRKIRFDHFMVELLPGKNSPLLK 864
>gi|213962106|ref|ZP_03390370.1| transcription-repair coupling factor [Capnocytophaga sputigena Capno]
gi|213955112|gb|EEB66430.1| transcription-repair coupling factor [Capnocytophaga sputigena Capno]
Length = 1110
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 242/627 (38%), Positives = 371/627 (59%), Gaps = 22/627 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYV H GIGKF G+ K +V+ I+ + Y D A + +YN
Sbjct: 429 LEVGDYVTHIDHGIGKFAGLQKIEVEGKQQEAIKLI---YGDRDVLFVSIHALHKITKYN 485
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ +P + KL + AW+ K K K ++++ +L++LY R + + + + +
Sbjct: 486 --GKDGKPPKIYKLG-SGAWKALKQKTKARVKEIAFNLIQLYAKRKEAQGFAFAHDSYMQ 542
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E A F YE TPDQ KA +V+ D+ E PMDRL+CGDVGFGKTEVA+RA F V G
Sbjct: 543 NELEASFLYEDTPDQSKATAEVKADM-ESSKPMDRLVCGDVGFGKTEVAIRAAFKAVDNG 601
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT VLA QHF S+R +P +++ L+RF++ EK+ L+ + G L+II+
Sbjct: 602 KQVAVLVPTTVLAFQHFQTFSQRMKDFP-VRIDYLNRFRTAKEKKIILEELAKGQLDIII 660
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH ++G +V Y +LGLL+VDEEQ+FGV K+K+ + K ++DVLTL+ATPIPRTL +L
Sbjct: 661 GTHQIVGEKVTYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLM 720
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD S+I+TPPP R PI + + F++E + I+YE+ RGGQVF++ R++ ++E
Sbjct: 721 AARDLSVINTPPPNRYPIDSQVVPFNEEVIRDGIRYEIQRGGQVFFMHNRVENIQEVAGM 780
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P IAI HGQ ++LEETM F +G +L+ T I+ESGLD+ NANTI + +
Sbjct: 781 IQRLLPDARIAIGHGQMDGKKLEETMLAFMEGRYDVLVATTIIESGLDVPNANTIFINNA 840
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+ L+Q+RGRVGR++K+A Y P +SD A +R+ A+ + +LG G +A K
Sbjct: 841 HNFGLSDLHQMRGRVGRSNKKAFCYFITPPLIAMSDDARKRIEAIAQFSDLGSGLNIAMK 900
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS---------V 682
D+ IRG G + G +Q+G + +G D + ++L E+++++ E+ + + +
Sbjct: 901 DLEIRGAGDLLGGEQSGFINEIGFDTYQKILQEAITELKENEFSELYHTAEEDKTYLTDT 960
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
QID + P Y+N + + + NE ++ L + +L ++GK P L
Sbjct: 961 QIDTDFELLFPDTYVNRVAERLNLYNELSNLPNEE--ALQVYERNLIDRFGKLPPQAIDL 1018
Query: 743 LKKLYVRRMAADIGITK-IYASGKMVG 768
L + V+ +A +GI K + +GKM G
Sbjct: 1019 LNSVRVKWLATRMGIEKLVMKNGKMTG 1045
>gi|345304591|ref|YP_004826493.1| transcription-repair coupling factor [Rhodothermus marinus
SG0.5JP17-172]
gi|345113824|gb|AEN74656.1| transcription-repair coupling factor [Rhodothermus marinus
SG0.5JP17-172]
Length = 1112
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 251/616 (40%), Positives = 364/616 (59%), Gaps = 18/616 (2%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
+L+ GDYVVH GIG+F G++ + E V + YADG A L+RY
Sbjct: 431 NLQPGDYVVHVDFGIGQFAGLQRITIRGKQQ--EVVRLHYADGDVLYVSVNALHKLHRYT 488
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
E +PR L+KL + WE+ K + K ++ + DL+ LY R + + P
Sbjct: 489 -GREGHQPR-LTKLG-SGQWEKVKARTKKRVKDIARDLIRLYAKRKASRGFAFSPDTVWQ 545
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E A F YE TPDQ A V+RD+ E+ PMDRL+CGDVGFGKTE+A+RA F V G
Sbjct: 546 REMEAAFEYEDTPDQAAAAEAVKRDM-EQPVPMDRLVCGDVGFGKTEIAIRAAFKAVQDG 604
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT +LA QH++ + R + YP +++ +LSRF+S A++ L + G ++II+
Sbjct: 605 KQVAVLVPTTILADQHYETFTRRLAPYP-VRIEVLSRFRSPAQQRAVLRDLAAGKVDIII 663
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLL++DEEQRFGV KE++ ++ VD LTL+ATPIPRTL AL
Sbjct: 664 GTHRLLSKDVQFKDLGLLIIDEEQRFGVAAKERLRQLRVEVDTLTLTATPIPRTLQFALM 723
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+ISTPPP R PI T + F + + AI+YE+ RGGQVF++ R++ + E
Sbjct: 724 GARDLSIISTPPPNRQPIVTEIHTFDETLIRDAIRYEISRGGQVFFIHNRVQSIYEMAAR 783
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQ P V IA+AHGQ R+LE M F +L+ TNI+ESGLDI NANTII+
Sbjct: 784 LQAIVPDVRIAVAHGQMKPRELERVMHDFMARKYDVLVSTNIIESGLDIPNANTIIINHA 843
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+QFGLA L+QLRGRVGR+D++A YL P L+ +A +RL A+EE ELG GF +A +
Sbjct: 844 EQFGLADLHQLRGRVGRSDRKAFCYLLVPSIHGLTREARQRLQAIEEFSELGSGFSIAMR 903
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV----PYK--SVQID 685
D+ IRG G + G +Q+G + +G + + ++L E++ ++ E V P K +D
Sbjct: 904 DLDIRGAGNLLGAEQSGFIEEIGFETYQQILDEAIRELREEEFADVLGAPPPKPPETSVD 963
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYGKEPYSMEILLK 744
+ + +P Y+ + +E +N + +E D + F E L ++G P ++ LL
Sbjct: 964 VEADAFIPDTYVT---SNVERLNLYRRLSEATDEAAIEAFREELADRFGPVPPEVDNLLW 1020
Query: 745 KLYVRRMAADIGITKI 760
++ + + + K+
Sbjct: 1021 AARLKLLGQALRLPKV 1036
>gi|427394340|ref|ZP_18887777.1| transcription-repair coupling factor [Alloiococcus otitis ATCC 51267]
gi|425730029|gb|EKU92876.1| transcription-repair coupling factor [Alloiococcus otitis ATCC 51267]
Length = 1191
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 245/627 (39%), Positives = 391/627 (62%), Gaps = 26/627 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYRY 211
L+ GDYVVH + GIG++ G+ + + +Y+ +EY G +KL PV Q + +L +Y
Sbjct: 498 LQPGDYVVHTQHGIGRYQGL--ETMTIDGINQDYLAVEYDQG-SKLYIPVSQLN-LLQKY 553
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK-NPA 270
+ +E K P+ ++KL T+W + K K + ++ + DL++LY R QK + K N
Sbjct: 554 -VASEGKTPK-INKLG-GTSWAKTKRKVQSQVEDIADDLIDLYASRESQKGYAFEKDNDY 610
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
A F A FPY+ T DQ ++ +V+ D+ E + PMDRL+ GDVG+GKTEVA+RAIF V
Sbjct: 611 QAAFEASFPYKETEDQLRSAEEVKSDM-ESDKPMDRLLVGDVGYGKTEVAIRAIFKAVQE 669
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQA L PT VLA+QH++ + +RF+ +P +++GL+SRF++K E +E + +K G L+++
Sbjct: 670 GKQAAFLVPTTVLAQQHYETMLDRFADFP-VEIGLMSRFKTKKEIDETISRLKDGTLDVV 728
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
VGTH LL V + +LGLLVVDEEQRFGVK KE++ K VDVLTL+ATPIPRTL++++
Sbjct: 729 VGTHRLLSKDVQFLDLGLLVVDEEQRFGVKHKERLKELKELVDVLTLTATPIPRTLHMSM 788
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+I TPP R P++T++ ++ + AI+ E+ R GQVF++ R+ +E M
Sbjct: 789 LGVRDLSVIETPPANRYPVQTYVMEMNELVIKEAIEREMARDGQVFFLHNRVDTIERRMS 848
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q P + HGQ QLEE + +F G +L+ T I+E+G+D+ N NT++V+D
Sbjct: 849 DIQALVPEARVTYVHGQMTENQLEERLYQFLSGEYDVLVTTTIIETGVDMPNVNTLLVED 908
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR+++ A+AY + +L++ + RL A+++ ELG GF++A
Sbjct: 909 ADRMGLSQLYQLRGRVGRSNRIAYAYFMHQADKVLTEVSESRLQAIKDFTELGSGFKIAM 968
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G++Q G + VG DL+ +ML E+++K V S ++D+++N
Sbjct: 969 RDLSIRGAGNLLGKEQHGFIDAVGFDLYSQMLEEAVAKKRGQEVRKAT--SAELDLSLNA 1026
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
LPS+YI +++ + + + +Q + L ++G+ P +++LL+
Sbjct: 1027 YLPSDYIEDESQKIDLYKRIRQLESEADYRDLQ--DELLDRFGEFPEEVDLLLQ------ 1078
Query: 751 MAADIGITKIYASGKMVGMKTNMNKKV 777
+G+ K Y+ +V N KK+
Sbjct: 1079 ----VGLLKHYSEESLVEKIENTGKKI 1101
>gi|385808601|ref|YP_005844997.1| transcription-repair coupling factor [Ignavibacterium album JCM
16511]
gi|383800649|gb|AFH47729.1| Transcription-repair coupling factor [Ignavibacterium album JCM
16511]
Length = 1126
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 227/523 (43%), Positives = 342/523 (65%), Gaps = 15/523 (2%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKLPVKQASRML 208
S++ GD+VVH+ GIGK+ G++ D Q++S + I YA+G ++
Sbjct: 424 SIKKGDFVVHEDYGIGKYAGLETIKIGDAQQES------MKILYAEGGVVYVNLNYLSLV 477
Query: 209 YRYNL-PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK 267
+Y+ +E K TLSKL T W+ K + K I++ +L+ELY R K +
Sbjct: 478 KKYSAGDSEGKLQPTLSKLG-TPEWQNTKARAKRKIKEAARELIELYARRKASKGFSFSD 536
Query: 268 NPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
+ E A F YE TPDQ +A ++++D+ + E PMDRL+CGDVGFGKTEVA+RA F
Sbjct: 537 DTIWQKELEASFFYEDTPDQARATEEIKQDM-QSENPMDRLVCGDVGFGKTEVAVRAAFK 595
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
V GKQ VL PT +LA+QHF+ S+R S++P +++ +LSRFQSKA+++E + +++ G
Sbjct: 596 AVQDGKQVAVLVPTTILAEQHFNTFSDRLSQFP-VRIAVLSRFQSKAKQKEIVQLLEEGK 654
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
++II+GTH LL V + +LGLL++DEE RFGV KEK+ ++++D LTL+ATPIPRTL
Sbjct: 655 IDIIIGTHRLLSKDVKFKDLGLLIIDEEHRFGVTAKEKLRQIRVNIDTLTLTATPIPRTL 714
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
L+L G RD S+I+TPPP R PI T +S F+ +K+ I E+ R GQV++V R++ +
Sbjct: 715 NLSLLGARDLSIIATPPPNRQPIYTSVSVFNIQKIREWILREVSRNGQVYFVHDRVQSIG 774
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
+ ++LQ+ P + I IAHGQ +LEE + F +LI T I+ESG+DI N NTI
Sbjct: 775 KLAEYLQRNIPEIKIGIAHGQLTPSKLEEVIHNFLNKKFDVLISTKIIESGIDIPNVNTI 834
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
IV +FGLA+L+QLRGRVGR+D++A+AY P + ++ +AL RL A+EE E+G GF
Sbjct: 835 IVNRADRFGLAELHQLRGRVGRSDRQAYAYFIVPSLTGITKKALRRLQAIEEFTEIGSGF 894
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV 669
L+ +D+ IRG G + G++QTG + +G DL+ +++ E++ ++
Sbjct: 895 NLSMRDLEIRGAGNLLGKEQTGFIDEIGFDLYIKLINEAVEEL 937
>gi|302388384|ref|YP_003824206.1| transcription-repair coupling factor [Clostridium saccharolyticum
WM1]
gi|302199012|gb|ADL06583.1| transcription-repair coupling factor [Clostridium saccharolyticum
WM1]
Length = 1179
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 246/646 (38%), Positives = 394/646 (60%), Gaps = 23/646 (3%)
Query: 137 SGYNGAGGFSYKVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYAD- 194
S Y G K+ +S L GDYVVH+ G+G + GI+ +++D + +Y+ +EYAD
Sbjct: 494 SSYEGT-----KIQNFSDLSIGDYVVHEDHGLGIYRGIE-KIEQDGIIK-DYLKVEYADN 546
Query: 195 GMAKLPVKQASRM--LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLME 252
G LP A+R+ + +Y + K+P+ L++L W R KT+ K A++++ +L++
Sbjct: 547 GNLYLP---ATRLDGIQKYA-GADAKKPK-LNRLG-GEQWNRTKTRVKGAVKEIAKELVQ 600
Query: 253 LYLHRLKQKRPPYPKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGD 311
LY R + Y ++ EF FPYE T DQ A + D+ R+ MDRLICGD
Sbjct: 601 LYAARQQTHGFQYGEDTVWQKEFEEMFPYEETEDQWDAIESTKSDMESRKI-MDRLICGD 659
Query: 312 VGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQS 371
VG+GKTE+ALRA F V GKQ + L PT +LA+QH++ ++R +P ++V L+SRF++
Sbjct: 660 VGYGKTEIALRAAFKAVQDGKQVVYLVPTTILAQQHYNTFAQRMKDFP-VRVDLMSRFRT 718
Query: 372 KAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKIS 431
+ ++ L+ +K G ++I++GTH +L V + +LGLL++DEEQRFGV KEKI K +
Sbjct: 719 PGQMKKTLEDLKRGMVDIVIGTHRVLSKDVQFKDLGLLIIDEEQRFGVAHKEKIKQLKEN 778
Query: 432 VDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDR 491
VDVLTL+ATPIPRTL+++L G RD S++ PP +R+PI+T++ ++ E V AI EL R
Sbjct: 779 VDVLTLTATPIPRTLHMSLVGIRDMSVLEEPPVDRMPIQTYVMEYNDEMVREAIHRELSR 838
Query: 492 GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICT 551
GGQV+YV R+ ++E + + P + AHGQ + +LE M F G I +L+CT
Sbjct: 839 GGQVYYVYNRVSNIDEVANHISGLVPEAAVTFAHGQMHEHELERIMFDFVNGEIDVLVCT 898
Query: 552 NIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALE 611
I+E+GLDI NANT+I+QD GL+QLYQLRGRVGR+ + ++A+L Y LL ++A +
Sbjct: 899 TIIETGLDIPNANTMIIQDADHMGLSQLYQLRGRVGRSSRTSYAFLMYKRDKLLKEEAEK 958
Query: 612 RLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDE 671
RL A+ E ELG G ++A +D+ IRG G + G +Q G + VG DL+ ++L +++ ++
Sbjct: 959 RLQAIREFTELGSGIKIAMRDLEIRGAGNVLGAEQHGHMEAVGYDLYCKLLNQAVLELKG 1018
Query: 672 HCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQ 731
Y++V +D +I+ +P+ YI + +++ +D + MQ + L +
Sbjct: 1019 QRKEEESYETV-VDCDIDAYIPTSYIKNEYQKLDIYKRISGIENEDEYMDMQ--DELMDR 1075
Query: 732 YGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKV 777
+G P ++ LLK ++ +A +T++ + + + + N K+
Sbjct: 1076 FGDIPKPVDNLLKVASLKALAQSAYVTEVNINRQEIRLTMYKNAKL 1121
>gi|182420518|ref|ZP_02643226.2| transcription-repair coupling factor [Clostridium perfringens NCTC
8239]
gi|182380350|gb|EDT77829.1| transcription-repair coupling factor [Clostridium perfringens NCTC
8239]
Length = 1168
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 245/643 (38%), Positives = 397/643 (61%), Gaps = 20/643 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH GIG + GIK +VQ +Y+ IEY+ G +PV+Q ++ +Y
Sbjct: 501 LKPGDYVVHVNSGIGVYKGIKQIEVQGHKR---DYLDIEYSKGDKLYVPVEQLD-LVQKY 556
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +++ P+ +SKL W++ K K + +I + DL++LY R K + K+
Sbjct: 557 -IGSDSASPK-ISKLG-GNEWQKAKAKVRKSINDIAGDLVKLYAERSTVKGYKFSKDTQW 613
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FPYE TPDQ A D++ D+ E MDRL+CGDVG+GKTEVA+RA F V
Sbjct: 614 QKQFEDEFPYEETPDQLSAIEDIKSDM-EANKVMDRLLCGDVGYGKTEVAIRAAFKAVME 672
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH+ + +RF+ +P I + ++SRF++K ++ E L +K G+++I+
Sbjct: 673 GKQVAFLVPTTILAEQHYKNMKKRFAGFP-ITIDMISRFRTKKQQTETLKALKEGNVDIL 731
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ + + +LGLL+VDEEQRFGV QKEKI SFK +VDVLTLSATPIPRTL+++L
Sbjct: 732 IGTHRLVSKDIQFKDLGLLIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSL 791
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG RD S+I TPP R PI+T++ + + + AI E++R GQV++V R++ ++E +
Sbjct: 792 TGVRDISVIETPPENRYPIQTYVVEQNDQLIRDAILREINRDGQVYFVHNRVESIQEIAN 851
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
++Q+ P + HGQ RQLE M F + +L+CT+I+E+G+DI N NT+IV D
Sbjct: 852 YIQELVPECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVND 911
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR++K A+AY Y +L++ A +RL AL++ ELG GF++A
Sbjct: 912 ADKMGLSQLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAM 971
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G Q G + +G DL+ ML +++ K+ + + P ++ +D+ ++
Sbjct: 972 RDLEIRGAGNMMGSAQHGHMAAIGYDLYCRMLEDTI-KIVKGEIEREPVETT-VDLKVDA 1029
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+PS YI +E+ + ++ + ++ E L ++ P ++ L+ Y++
Sbjct: 1030 FIPSSYIKDEIQKIEVYKKIAAIENEEDYEYVR--EELEDRFSNIPNTVYNLMDIAYIKS 1087
Query: 751 MAADIGITKIYASGK----MVGMKTNMNKKVFKMMIDSMTSEV 789
A + I +I + + + +K++FK++++ ++
Sbjct: 1088 KAKLLNIEEIKEKNEDIIFIFESRERTDKRIFKVLLEEYKDDI 1130
>gi|148266962|ref|YP_001245905.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus JH9]
gi|150393008|ref|YP_001315683.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus JH1]
gi|257794256|ref|ZP_05643235.1| transcription-repair coupling factor [Staphylococcus aureus A9781]
gi|258420806|ref|ZP_05683742.1| transcription-repair coupling factor [Staphylococcus aureus A9719]
gi|258448018|ref|ZP_05696148.1| transcription-repair coupling factor [Staphylococcus aureus A6224]
gi|258453836|ref|ZP_05701809.1| transcription-repair coupling factor [Staphylococcus aureus A5937]
gi|295407393|ref|ZP_06817190.1| transcription-repair coupling factor [Staphylococcus aureus A8819]
gi|297246473|ref|ZP_06930313.1| transcription-repair coupling factor [Staphylococcus aureus A8796]
gi|384863831|ref|YP_005749190.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|387149663|ref|YP_005741227.1| Transcription-repair coupling factor [Staphylococcus aureus 04-02981]
gi|415694303|ref|ZP_11455829.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CGS03]
gi|417652217|ref|ZP_12301968.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21172]
gi|418423672|ref|ZP_12996821.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS1]
gi|418426616|ref|ZP_12999644.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS2]
gi|418432437|ref|ZP_13005239.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS4]
gi|418436153|ref|ZP_13007971.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS5]
gi|418439048|ref|ZP_13010772.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS6]
gi|418442031|ref|ZP_13013650.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS7]
gi|418448098|ref|ZP_13019506.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS9]
gi|418450924|ref|ZP_13022267.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS10]
gi|418453941|ref|ZP_13025215.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS11a]
gi|418456845|ref|ZP_13028061.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS11b]
gi|418638217|ref|ZP_13200519.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-3]
gi|418653633|ref|ZP_13215569.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-99]
gi|418878794|ref|ZP_13433027.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1165]
gi|418880207|ref|ZP_13434428.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1213]
gi|418883135|ref|ZP_13437336.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1769]
gi|418893960|ref|ZP_13448062.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1057]
gi|418919317|ref|ZP_13473264.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC348]
gi|418930529|ref|ZP_13484378.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1750]
gi|419784372|ref|ZP_14310141.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-M]
gi|147740031|gb|ABQ48329.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus JH9]
gi|149945460|gb|ABR51396.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus JH1]
gi|257788228|gb|EEV26568.1| transcription-repair coupling factor [Staphylococcus aureus A9781]
gi|257843198|gb|EEV67611.1| transcription-repair coupling factor [Staphylococcus aureus A9719]
gi|257858708|gb|EEV81581.1| transcription-repair coupling factor [Staphylococcus aureus A6224]
gi|257864007|gb|EEV86762.1| transcription-repair coupling factor [Staphylococcus aureus A5937]
gi|285816202|gb|ADC36689.1| Transcription-repair coupling factor [Staphylococcus aureus 04-02981]
gi|294967750|gb|EFG43782.1| transcription-repair coupling factor [Staphylococcus aureus A8819]
gi|297176660|gb|EFH35922.1| transcription-repair coupling factor [Staphylococcus aureus A8796]
gi|312828998|emb|CBX33840.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|315128631|gb|EFT84634.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CGS03]
gi|329725040|gb|EGG61535.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21172]
gi|375018481|gb|EHS12059.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-99]
gi|375022920|gb|EHS16387.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-3]
gi|377693300|gb|EHT17673.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1165]
gi|377700075|gb|EHT24420.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1057]
gi|377716787|gb|EHT40968.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1769]
gi|377716866|gb|EHT41045.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1750]
gi|377733052|gb|EHT57099.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1213]
gi|377767529|gb|EHT91324.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC348]
gi|383364118|gb|EID41438.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-M]
gi|387721216|gb|EIK09096.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS2]
gi|387722608|gb|EIK10397.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS1]
gi|387727661|gb|EIK15168.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS4]
gi|387729600|gb|EIK17031.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS5]
gi|387731696|gb|EIK18962.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS6]
gi|387739763|gb|EIK26751.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS9]
gi|387740022|gb|EIK26995.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS7]
gi|387747063|gb|EIK33778.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS10]
gi|387748400|gb|EIK35083.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS11a]
gi|387749227|gb|EIK35867.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS11b]
Length = 1168
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTENAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|163848640|ref|YP_001636684.1| transcription-repair coupling factor [Chloroflexus aurantiacus
J-10-fl]
gi|222526576|ref|YP_002571047.1| transcription-repair coupling factor [Chloroflexus sp. Y-400-fl]
gi|163669929|gb|ABY36295.1| transcription-repair coupling factor [Chloroflexus aurantiacus
J-10-fl]
gi|222450455|gb|ACM54721.1| transcription-repair coupling factor [Chloroflexus sp. Y-400-fl]
Length = 1185
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 264/647 (40%), Positives = 374/647 (57%), Gaps = 46/647 (7%)
Query: 153 SLRSGDYVVHKKVGIGKFVG-IKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYR 210
+L+ GDYVVH + GI F G I+ V S V EY+ + YA + +PV Q R+ R
Sbjct: 490 TLKPGDYVVHIEHGIAIFDGMIRRTV---SEVEREYLVLRYAGEDKIYVPVDQIDRV-TR 545
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNP 269
Y + P TL++L T WER K K + A+Q + +L+ LY R LK P N
Sbjct: 546 YIGAGDG--PPTLTRLG-TQDWERTKRKVRAAVQDLAEELLRLYAQRQLKSGYAFSPDNE 602
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
E A FPY T DQ +A +V+ D+ E+ TPMDRL+CGDVGFGKTEVALRA F V
Sbjct: 603 WQRELEASFPYLETDDQLRAIAEVKADM-EKPTPMDRLVCGDVGFGKTEVALRAAFKAVQ 661
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQ +L PT VLA+QHFD +R + +P + V +LSRF+S E++ + + G ++I
Sbjct: 662 DGKQVAILVPTTVLAQQHFDTFRKRMAAFP-VTVEMLSRFRSPKEQDAIIRDLARGKIDI 720
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
I+GTH LL + VV+ NLGL+++DEEQRFGV+ KE++ + VDVLTL+ATPIPRTL++A
Sbjct: 721 IIGTHRLLSNDVVFRNLGLVIIDEEQRFGVRHKERLKLMRTEVDVLTLTATPIPRTLHMA 780
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
L G RD S+I TPP +R+PIKT++ + I+ EL+R GQV+ V R++ +
Sbjct: 781 LAGIRDLSVIDTPPEDRIPIKTYVVPTDDHLIQEVIRRELEREGQVYVVHNRVQSIYHVA 840
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+ L++ P IA+ HGQ R+LE+ M F +G +L+CT I+ESGLD+ NANTII+
Sbjct: 841 ERLRRLVPEARIAVGHGQLAERELEQVMIDFFEGRYDVLVCTTIIESGLDVPNANTIIID 900
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D +GLAQLYQLRGRVGR A+AYL Y ++++ A RL A++E ELG GF++A
Sbjct: 901 DATNYGLAQLYQLRGRVGRGATRAYAYLLYNAARVMTNDARLRLEAIQEATELGAGFRIA 960
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHC------------ 673
+D+ IRG G + G +Q+G + VG DL+ +L +++ K VDE
Sbjct: 961 MRDLEIRGAGNLLGAEQSGHIAAVGFDLYSRLLEQAVRKLKQDVDELAETATDSSVTPAV 1020
Query: 674 -------------VISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQD-IW 719
V+ P V ID+ + LP +YI+ + + A D +
Sbjct: 1021 MAESLRAPNVSERVLVAPL--VTIDLPLTAYLPPDYISDETVRLAVYQRMVDATTLDEVR 1078
Query: 720 CLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM 766
L Q E + R G P + L+ L +R +A G+ I G +
Sbjct: 1079 GLRQ--ELIDRFGGPLPEPVLHLILWLQIRLLALQAGVASITTEGDV 1123
>gi|18311466|ref|NP_563400.1| transcription-repair coupling factor [Clostridium perfringens str.
13]
gi|18146150|dbj|BAB82190.1| transcription-repair coupling factor [Clostridium perfringens str.
13]
Length = 1162
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 245/643 (38%), Positives = 397/643 (61%), Gaps = 20/643 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH GIG + GIK +VQ +Y+ IEY+ G +PV+Q ++ +Y
Sbjct: 495 LKPGDYVVHVNSGIGVYKGIKQIEVQGHKR---DYLDIEYSKGDKLYVPVEQLD-LVQKY 550
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +++ P+ +SKL W++ K K + +I + DL++LY R K + K+
Sbjct: 551 -IGSDSASPK-ISKLG-GNEWQKAKAKVRKSINDIAGDLVKLYAERSTVKGYKFSKDTQW 607
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FPYE TPDQ A D++ D+ E MDRL+CGDVG+GKTEVA+RA F V
Sbjct: 608 QKQFEDEFPYEETPDQLSAIEDIKSDM-EANKVMDRLLCGDVGYGKTEVAIRAAFKAVME 666
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH+ + +RF+ +P I + ++SRF++K ++ E L +K G+++I+
Sbjct: 667 GKQVAFLVPTTILAEQHYKNMKKRFAGFP-ITIDMISRFRTKKQQTETLKALKEGNVDIL 725
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ + + +LGLL+VDEEQRFGV QKEKI SFK +VDVLTLSATPIPRTL+++L
Sbjct: 726 IGTHRLVSKDIQFKDLGLLIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRTLHMSL 785
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG RD S+I TPP R PI+T++ + + + AI E++R GQV++V R++ ++E +
Sbjct: 786 TGVRDISVIETPPENRYPIQTYVVEQNDQLIRDAILREINRDGQVYFVHNRVESIQEIAN 845
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
++Q+ P + HGQ RQLE M F + +L+CT+I+E+G+DI N NT+IV D
Sbjct: 846 YIQELVPECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNTMIVND 905
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR++K A+AY Y +L++ A +RL AL++ ELG GF++A
Sbjct: 906 ADKMGLSQLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSGFKIAM 965
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G Q G + +G DL+ ML +++ K+ + + P ++ +D+ ++
Sbjct: 966 RDLEIRGAGNMMGSAQHGHMAAIGYDLYCRMLEDTI-KIVKGEIEREPVETT-VDLKVDA 1023
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+PS YI +E+ + ++ + ++ E L ++ P ++ L+ Y++
Sbjct: 1024 FIPSSYIKDEIQKIEVYKKIAAIENEEDYEYVR--EELEDRFSNIPNTVYNLMDIAYIKS 1081
Query: 751 MAADIGITKIYASGK----MVGMKTNMNKKVFKMMIDSMTSEV 789
A + I +I + + + +K++FK++++ ++
Sbjct: 1082 KAKLLNIEEIKEKNEDIIFIFESRERTDKRIFKVLLEEYKDDI 1124
>gi|291522023|emb|CBK80316.1| transcription-repair coupling factor [Coprococcus catus GD/7]
Length = 1178
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 255/615 (41%), Positives = 379/615 (61%), Gaps = 26/615 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNL 213
L GDYVVH+ G+G + GI+ +V+ D V +Y+ IEY G + + M+ +Y
Sbjct: 505 LSVGDYVVHEGHGVGIYRGIE-NVEVDG-VAKDYIKIEYGGGGSLYILATNLDMIQKYA- 561
Query: 214 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA- 272
+TK+ + ++K+S W R KTK K A++++ +DL++LY R Q+ Y P
Sbjct: 562 DKDTKQVK-VNKMS-GPEWTRTKTKVKGAVRELAMDLVKLYAAR--QESEGYVCGPDTVW 617
Query: 273 --EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF FPYE T DQ A +RD+ E MDRL+CGDVGFGKTEVA+RA F +V
Sbjct: 618 QREFEEMFPYEETQDQLDAIEATKRDM-ESTKIMDRLVCGDVGFGKTEVAIRAAFKMVQE 676
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
G+Q VL PT +LA+QH++ +R +YP + +GLLSRF++KAE+++ L+ +K G ++I+
Sbjct: 677 GRQCAVLVPTTILAQQHYNTFCQRMKEYP-VNIGLLSRFRTKAEQKKTLEDLKAGRVDIV 735
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH LL V + NLGLLVVDEEQRFGV KEKI K +VDVLTL+ATPIPRT++++L
Sbjct: 736 IGTHRLLSKDVEFKNLGLLVVDEEQRFGVTHKEKIKKIKENVDVLTLTATPIPRTMHMSL 795
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD SL+ P +R PI+T++ ++ E + AI EL RGGQV+YV R+ G++E
Sbjct: 796 IGIRDMSLLEEAPVDRQPIQTYVMEYNDELIREAIMRELARGGQVYYVYNRVNGIDEIAA 855
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L + P +A AHGQ R+LE+ M +F G I +L+ T I+E+GLDI N NT+I+ D
Sbjct: 856 GLSELVPDASVAYAHGQMSERELEKIMYQFINGEIDVLVSTTIIETGLDISNVNTMIIHD 915
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR+++ ++A+L Y +L + A +RL+A+ E ELG G+++A
Sbjct: 916 ADKLGLSQLYQLRGRVGRSNRTSYAFLMYKRDKMLKEVAEKRLSAIREFTELGSGYRIAM 975
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL-----SKVDEHCVISVPYKSVQID 685
+D+ IRG G + GE+Q+G + VG DL+ +ML +++ K+ E SV D
Sbjct: 976 RDLEIRGAGNLLGERQSGHMEAVGYDLYCKMLNQAVMEAKGEKIQEDFETSV-------D 1028
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
I+I+ +PS YI + ++M D + M + L ++G+ P LL
Sbjct: 1029 IDIDAFIPSAYIKNEFQKLDMYKRIASIQNADEYGEM--LDELIDRFGELPKPAANLLLV 1086
Query: 746 LYVRRMAADIGITKI 760
+R A G+ ++
Sbjct: 1087 ALIRAEAHAAGVVQL 1101
>gi|336171928|ref|YP_004579066.1| transcription-repair coupling factor [Lacinutrix sp. 5H-3-7-4]
gi|334726500|gb|AEH00638.1| transcription-repair coupling factor [Lacinutrix sp. 5H-3-7-4]
Length = 1120
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 248/638 (38%), Positives = 377/638 (59%), Gaps = 22/638 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
+L GDYV H GIGKF G+K DV+ I+ V+ E + L + ++ ++
Sbjct: 438 NLDIGDYVTHIDHGIGKFGGLKKIDVEGKKQEAIKLVYGER--DILYLSIHSLHKIT-KF 494
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
N + +P + KL + AW+ K K K ++ + +L++LY R +K Y + +
Sbjct: 495 N--GKDGKPPKVYKLG-SKAWKTLKQKTKARVKHIAFNLIKLYAKRKLEKGYQYNTDSYL 551
Query: 272 A-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E A F YE TPDQ KA D++ D+ E E PMDRLICGDVGFGKTEVA+RA F V
Sbjct: 552 QHELEASFIYEDTPDQIKATADIKADM-ESERPMDRLICGDVGFGKTEVAIRAAFKAVDN 610
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ VL PT +LA QH SER ++P + V L+RF++ EK E ++ ++ GH++II
Sbjct: 611 GKQVAVLVPTTILAFQHHKTFSERLKEFP-VTVDYLNRFRTAKEKRETIEKLEKGHVDII 669
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ +V + +LGLL+VDEEQ+FGV KEK+ + K +VDVLTL+ATPIPRTL +L
Sbjct: 670 IGTHQLVNKKVKFKDLGLLIVDEEQKFGVAVKEKLKTLKDNVDVLTLTATPIPRTLQFSL 729
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S+I+TPPP R PI++++ F++E + A+ YE+ RGGQ+F++ RI+ ++E
Sbjct: 730 MAARDLSVITTPPPNRFPIESNVIRFNEETIRDAVSYEIQRGGQIFFIHNRIENIKEVAG 789
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
LQ+ P I I HGQ ++LEE M F G +L+ T I+ESGLD+ NANTI + +
Sbjct: 790 MLQRLVPDAKIGIGHGQLDGKKLEELMLAFINGDFDVLVSTTIIESGLDVPNANTIFINN 849
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A Y P ++ A +R+ ALE+ LG GF +A
Sbjct: 850 ANNFGLSDLHQMRGRVGRSNKKAFCYFITPGYDAMTPDARKRIQALEQFTALGSGFNIAM 909
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDE--------HCVISVPY-KS 681
KD+ IRG G + G +Q+G + +G D + ++L E++ ++ E + Y K
Sbjct: 910 KDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIEELKETEFKDLYSEDINDKEYVKD 969
Query: 682 VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
+ ID + P +YIN++ + + + ++ L +F L ++G+ P +
Sbjct: 970 ITIDTDFELLFPDDYINNISERLNLYTQLNNFKTEE--ELEKFEIDLIDRFGELPTQVVD 1027
Query: 742 LLKKLYVRRMAADIGITK-IYASGKMVGMKTNMNKKVF 778
LL + ++ +A +G+ K I GK+VG N + F
Sbjct: 1028 LLNSVRLKWLATKLGLEKVIMKKGKLVGYFINDQQSSF 1065
>gi|417654388|ref|ZP_12304109.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21193]
gi|329731067|gb|EGG67439.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21193]
Length = 1168
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTSKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|56961865|ref|YP_173587.1| transcription-repair coupling factor [Bacillus clausii KSM-K16]
gi|56908099|dbj|BAD62626.1| transcription-repair coupling factor [Bacillus clausii KSM-K16]
Length = 1180
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 253/686 (36%), Positives = 412/686 (60%), Gaps = 20/686 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L GD VVH G+GK++G+ + + + V +Y+ + YA G KL PV+Q
Sbjct: 494 RIKSYSELAVGDLVVHTNHGVGKYLGV--ETLEINGVHKDYLNLRYA-GNDKLYVPVEQI 550
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + E K P+ + + W++ K K + +++ + DL++LY R
Sbjct: 551 DQ-VQKY-VGTEEKDPKIYA--LGGSDWKKVKKKVQTSVEDIADDLIKLYAEREASVGHR 606
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ + P AEF + FPY+ T DQ +A +++ D+ E++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 607 FSSDGPEQAEFESSFPYQETEDQLRAIKEIKEDM-EKQRPMDRLLCGDVGYGKTEVAIRA 665
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + GKQ +L PT +LA+QHF+ +S+RFS +P I VG+LSRF+S+ E+ E L +K
Sbjct: 666 AFKAIMDGKQVAILVPTTILAQQHFETISDRFSDFP-ITVGVLSRFRSRKEQTEVLKGLK 724
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++++VGTH LL V + +LGLL+VDEEQRFGV KEKI K ++DVLTL+ATPIP
Sbjct: 725 AGSVDLVVGTHRLLSKDVQFRDLGLLIVDEEQRFGVTHKEKIKRMKANIDVLTLTATPIP 784
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ F+ V AI+ EL RGGQV+ + R++
Sbjct: 785 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEFNPAIVREAIERELSRGGQVYVLYNRVE 844
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E + + P ++ AHGQ R+LE + F +G +L+ T I+E+G+DI N
Sbjct: 845 DIERMTEQISTLVPDARVSYAHGQMNERELESIILDFLEGESDVLVTTTIIETGVDIPNV 904
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV + + GL+QLYQ+RGRVGR+++ A++Y Y +L++ A +RL A++E ELG
Sbjct: 905 NTLIVCNADKMGLSQLYQIRGRVGRSNRVAYSYFTYQPDKVLTEVAEKRLQAIKEFTELG 964
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + P+K+ +
Sbjct: 965 SGFKIAMRDLTIRGAGNLLGSQQHGFIDSVGFDLYSQMLKEAIEERKGEKPKEPPFKA-E 1023
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+++NI+ +P YI + +EM + + + + + L ++G+ P + L
Sbjct: 1024 LNVNIDAYIPERYIPDAKQKIEMYKRFKGV--ETLEEIADLQDELVDRFGEYPKQVAYLF 1081
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM---KTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 800
+ ++ +A + KI V + + N+ ++D+ S+ +G+Q
Sbjct: 1082 EMTKIKLIADQEKVEKITEGKDAVTILLTEETTNRIHVATLVDAAQKIGRDVSIGSQGNQ 1141
Query: 801 IKAEL-LLELPREQLLNWIFQCLAEL 825
IK + +L E LL +I + L L
Sbjct: 1142 IKLVIKTKQLSDETLLAYIIELLEAL 1167
>gi|375306206|ref|ZP_09771507.1| transcription-repair coupling factor [Paenibacillus sp. Aloe-11]
gi|375081793|gb|EHS60000.1| transcription-repair coupling factor [Paenibacillus sp. Aloe-11]
Length = 1175
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 233/559 (41%), Positives = 358/559 (64%), Gaps = 19/559 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQAS 205
++ YS L+ GDYVVH+ GIGK++GI + + +Y+ I YA G +P++Q
Sbjct: 482 RIKSYSELKVGDYVVHQNHGIGKYMGI--GTLEVGGIHKDYMHILYAGGDKLSVPIEQID 539
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
++ +Y + +E K P+ + KL W R K+K + ++Q + DL++LY R Q P +
Sbjct: 540 -LIQKY-VGSEDKEPK-IYKLG-GNEWTRVKSKVRSSVQDIADDLIKLYAER--QSAPGF 593
Query: 266 P---KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+P EF FPYE T DQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+R
Sbjct: 594 AFEKDSPEQQEFEDMFPYEETRDQVRAIEEIKKDM-EQSRPMDRLLCGDVGYGKTEVAIR 652
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F GKQ VL PT +LA+QH++ ERFS YP + +LSRF+++ E+ E +
Sbjct: 653 AAFKSAIEGKQVAVLVPTTILAQQHYETFRERFSGYP-FNIQVLSRFRTRKEQNETTKGV 711
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
+ G ++I++GTH LL +V+ +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPI
Sbjct: 712 RQGTVDIVIGTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPI 771
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T++ S+ V AI+ E+ RGGQV+Y+ R+
Sbjct: 772 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIEREMARGGQVYYLYNRV 831
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+G++E + P + + HGQ +LE+T+ F G +L+ T+I+E+G+DI N
Sbjct: 832 QGIQEMAAEINALVPEAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPN 891
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E EL
Sbjct: 892 VNTLIVHDADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTEL 951
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCV----ISVP 678
G GF++A +D+ IRG G + G +Q G + +VG DL+ +ML E ++K + +S
Sbjct: 952 GSGFKIAMRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINKRKVSVLGEEDLSNR 1011
Query: 679 YKSVQIDININPRLPSEYI 697
S ID++++ LP +YI
Sbjct: 1012 NWSTSIDLSVDAYLPGDYI 1030
>gi|384049326|ref|YP_005497343.1| transcription-repair coupling factor (Helicase, mfd) [Bacillus
megaterium WSH-002]
gi|345447017|gb|AEN92034.1| Transcription-repair coupling factor (Helicase, mfd) [Bacillus
megaterium WSH-002]
Length = 1176
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 246/659 (37%), Positives = 403/659 (61%), Gaps = 30/659 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L GDYVVH GIG+++G++ ++ + +Y+ I+Y +G KL PV+Q
Sbjct: 493 RIKSYSELNVGDYVVHVNHGIGRYLGMETLEINGNHK---DYIHIKY-EGSDKLYVPVEQ 548
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
++ + + +E K P+ + KL W++ K K + ++Q + DL++LY R K
Sbjct: 549 IDQV--QKYVGSEGKEPK-VYKLGGND-WKKVKRKVESSVQDIADDLIKLYAEREASKGY 604
Query: 264 PY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ P EF FPY+ T DQ ++ ++++D+ E E PMDRL+CGDVG+GKTEVA+R
Sbjct: 605 AFSPDGDLQREFETAFPYQETEDQLRSVQEIKKDM-EHERPMDRLLCGDVGYGKTEVAIR 663
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F V+ GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF+S+ +++E + +
Sbjct: 664 AAFKAVTDGKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRSRKQQQETIKGL 722
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G +++++GTH LL V+Y +LGLLV+DEEQRFGV KEKI K +VDVLTL+ATPI
Sbjct: 723 KNGTVDVVIGTHRLLSKDVIYKDLGLLVIDEEQRFGVTHKEKIKQMKANVDVLTLTATPI 782
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL R GQV+++ R+
Sbjct: 783 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPVLVREAIERELARDGQVYFLYNRV 842
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ +E + + P + AHG+ +LE + F +G +++ T I+E+G+DI N
Sbjct: 843 EDIERKAEEISMLVPDARVTYAHGKMNETELEAVILSFLEGEYDVIVSTTIIETGVDIPN 902
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+IV + + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E EL
Sbjct: 903 VNTLIVNNADKMGLSQLYQLRGRVGRSNRVAYAYFTYHKDKVLTEVAEKRLQAIKEFTEL 962
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 682
G GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + SV + +V
Sbjct: 963 GSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGSDGESVKF-NV 1021
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
+++++++ +P +YI +EM A +DI + + + ++G+ P +E
Sbjct: 1022 EMNLDLDAYIPDQYITDGRLKIEMYKRFRGIEALEDI---QELQDEMIDRFGEYPAEVEY 1078
Query: 742 LLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 800
L K + TK+YA+ +V +++ ++ + +S + L GDQ
Sbjct: 1079 LFK----------VAETKVYATQNLVESILQSKQEISILLSEEASSTIDGQKLFMLGDQ 1127
>gi|373859321|ref|ZP_09602051.1| transcription-repair coupling factor [Bacillus sp. 1NLA3E]
gi|372450990|gb|EHP24471.1| transcription-repair coupling factor [Bacillus sp. 1NLA3E]
Length = 1178
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 237/564 (42%), Positives = 363/564 (64%), Gaps = 16/564 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS LR GDYVVH GIGK++GI+ V + V +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELRVGDYVVHVNHGIGKYLGIETLVI--NGVHKDYLHIRY-QGSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
L + + +E K P+ + KL T W+R K K + ++Q + DL++LY R K
Sbjct: 550 D--LVQKYVGSEGKEPK-IYKLGGTD-WKRVKKKVESSVQDIADDLIKLYAEREAAKGHS 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P +F FPY+ T DQ ++ ++++D+ E+E PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDGDMQRDFEMAFPYQETEDQIRSINEIKKDM-EKERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ L PT +LA+QH++ + ERF YP IK+GLLSRF+++ E+ E + +K
Sbjct: 665 GFKAIADGKQVAFLVPTTILAQQHYETMRERFQDYP-IKIGLLSRFRTRKEQLETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL ++Y ++GLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 AGTVDIVVGTHRLLSKDIIYRDIGLLIIDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL R GQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGGLVREAIERELARDGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E ++ + P + AHGQ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKVEEISMLVPDARVVCAHGQMSENELESVMLGFLEGEYDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL-SKVDEHCVISVPYKSV 682
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML E++ ++ + + P ++
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKEAIEARKSDINLDEAP--TL 1021
Query: 683 QIDININPRLPSEYINHLENPMEM 706
+ID+ ++ +P YI +EM
Sbjct: 1022 EIDVEVDAYIPDAYIGDGHQKIEM 1045
>gi|268318293|ref|YP_003292012.1| transcription-repair coupling factor [Rhodothermus marinus DSM 4252]
gi|262335827|gb|ACY49624.1| transcription-repair coupling factor [Rhodothermus marinus DSM 4252]
Length = 1112
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 254/626 (40%), Positives = 368/626 (58%), Gaps = 19/626 (3%)
Query: 143 GGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVK 202
GG S + +L+ GDYVVH GIG+F G++ + E V + YADG
Sbjct: 422 GGLSLRA-LQNLQPGDYVVHVDFGIGQFAGLQRITIRGKQQ--EVVRLHYADGDVLYVSV 478
Query: 203 QASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
A L+RY E +PR L+KL + WE+ K + K ++ + DL+ LY R +
Sbjct: 479 NALHKLHRYT-GREGHQPR-LTKLG-SGQWEKVKARTKKRVKDIARDLIRLYAKRKASRG 535
Query: 263 PPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
+ P E A F YE TPDQ A V+RD+ E+ PMDRL+CGDVGFGKTE+A+
Sbjct: 536 FAFSPDTVWQREMEAAFEYEDTPDQAAAAEAVKRDM-EQPVPMDRLVCGDVGFGKTEIAI 594
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F V GKQ VL PT +LA QH++ + R + YP +++ +LSRF+S A + L
Sbjct: 595 RAAFKAVQDGKQVAVLVPTTILADQHYETFTRRLAPYP-VRIEVLSRFRSPARQRAVLRD 653
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+ G ++II+GTH LL V + +LGLL++DEEQRFGV KE++ ++ VD LTL+ATP
Sbjct: 654 LAAGKVDIIIGTHRLLSKDVQFKDLGLLIIDEEQRFGVAAKERLRQLRVEVDTLTLTATP 713
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL AL G RD S+ISTPPP R PI T + F + + AI+YE+ RGGQVF++ R
Sbjct: 714 IPRTLQFALMGARDLSIISTPPPNRQPIVTEIHTFDETLIRDAIRYEISRGGQVFFIHNR 773
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
++ + E LQ P V IA+AHGQ R+LE M F +L+ TNI+ESGLDI
Sbjct: 774 VQSIYEMAARLQAIVPDVRIAVAHGQMKPRELERVMHDFMARKYDVLVSTNIIESGLDIP 833
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANTII+ +QFGLA L+QLRGRVGR+D++A YL P L+ +A +RL A+EE E
Sbjct: 834 NANTIIINHAEQFGLADLHQLRGRVGRSDRKAFCYLLVPSIHGLTREARQRLQAIEEFSE 893
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV---- 677
LG GF +A +D+ IRG G + G +Q+G + +G + + ++L E++ ++ E V
Sbjct: 894 LGSGFSIAMRDLDIRGAGNLLGAEQSGFIEEIGFETYQQILDEAIRELREEEFADVLGAP 953
Query: 678 PYK--SVQIDININPRLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYGK 734
P K +D+ + +P Y++ + +E +N + +E D + F E L ++G
Sbjct: 954 PPKPPETSVDVEADAFIPETYVS---SNVERLNLYRRLSEATDEAAIEAFREELADRFGP 1010
Query: 735 EPYSMEILLKKLYVRRMAADIGITKI 760
P ++ LL ++ + + + K+
Sbjct: 1011 VPPEVDNLLWAARLKLLGQALRLPKV 1036
>gi|452077537|gb|AGF93493.1| transcription-repair coupling factor [uncultured organism]
Length = 1039
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/511 (44%), Positives = 333/511 (65%), Gaps = 10/511 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYVVH+ GIGK++G+K ++Q +Y+ ++YAD KL V L +
Sbjct: 374 LNPGDYVVHENHGIGKYMGVKTLEIQNRHQ---DYLVLKYADE-DKLYVPTDKVNLVQKY 429
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ ++K P+ S S + W++ K + K ++++M + L+ELY R + + ++
Sbjct: 430 IGTDSKPPKLYSLGS--SEWKKVKQRVKNSVKEMAIGLLELYAERETVEGYAFSEDTVWQ 487
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPYE TPDQ A +V++D+ E TPMDRL+CGDVG+GKTEVA+RA F G
Sbjct: 488 REFEDSFPYEETPDQMNAIEEVKKDM-EDPTPMDRLLCGDVGYGKTEVAIRAAFKAAMDG 546
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT +LA+QH++ SER KYP I V ++SRF++K E+EE L + G ++I++
Sbjct: 547 KQTAVLVPTTILAQQHYNTFSERIEKYP-INVEMISRFKTKREQEEILKKLAKGEVDIVI 605
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V++++LGLL++DEEQRFGV KEK+ + K SVDVLTL+ATPIPRTL++AL
Sbjct: 606 GTHRLLSEDVIFSDLGLLIIDEEQRFGVSHKEKLKNIKSSVDVLTLTATPIPRTLHMALV 665
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ F++E V I+ E+ R GQV++V R++ +++ D
Sbjct: 666 GVRDMSVIETPPENRYPIRTYIREFNEELVRETIRREMGRNGQVYFVHNRVEDIDKKADM 725
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+++ P +A+AHGQ +LE M F +L+CT I+E+GLDI N NTII+
Sbjct: 726 VRRLVPEARVAVAHGQMNENRLERLMYNFYNNEYDVLVCTTIIENGLDIPNVNTIIINRA 785
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GLAQLYQLRGRVGR+ + A+AYL Y +L + A +RL A++E LG GF++A +
Sbjct: 786 DLMGLAQLYQLRGRVGRSSRVAYAYLLYESDRVLPEVAEKRLKAIKEFTNLGSGFKIAMR 845
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEML 662
D+ IRG G + G +Q G + ++G L+ ++L
Sbjct: 846 DLEIRGAGNLLGAEQHGHIASIGFSLYCKLL 876
>gi|429753012|ref|ZP_19285841.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
326 str. F0382]
gi|429175309|gb|EKY16757.1| transcription-repair coupling factor [Capnocytophaga sp. oral taxon
326 str. F0382]
Length = 1110
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 242/627 (38%), Positives = 371/627 (59%), Gaps = 22/627 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYV H GIGKF G+ K +V+ I+ + Y D A + +YN
Sbjct: 429 LEVGDYVTHIDHGIGKFAGLQKIEVEGKQQEAIKLI---YGDRDVLFVSIHALHKITKYN 485
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ +P + KL + AW+ K K K ++++ +L++LY R + + + + +
Sbjct: 486 --GKDGKPPKIYKLG-SGAWKALKQKTKARVKEIAFNLIQLYAKRKEAQGFAFAHDSYMQ 542
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E A F YE TPDQ KA +V+ D+ E PMDRL+CGDVGFGKTEVA+RA F V G
Sbjct: 543 NELEASFLYEDTPDQSKATAEVKADM-ESSKPMDRLVCGDVGFGKTEVAIRAAFKAVDNG 601
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT VLA QHF S+R +P +++ L+RF++ EK+ L+ + G L+II+
Sbjct: 602 KQVAVLVPTTVLAFQHFQTFSQRMKDFP-VRIDYLNRFRTAKEKKIILEELAKGQLDIII 660
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH ++G +V Y +LGLL+VDEEQ+FGV K+K+ + K ++DVLTL+ATPIPRTL +L
Sbjct: 661 GTHQIVGEKVTYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLM 720
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD S+I+TPPP R PI + + F++E + I+YE+ RGGQVF++ R++ ++E
Sbjct: 721 AARDLSVINTPPPNRYPIDSQVVPFNEEVIRDGIRYEIQRGGQVFFMHNRVENIQEVAGM 780
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P IAI HGQ ++LEETM F +G +L+ T I+ESGLD+ NANTI + +
Sbjct: 781 IQRLLPDARIAIGHGQMDGKKLEETMLAFMEGRYDVLVATTIIESGLDVPNANTIFINNA 840
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+ L+Q+RGRVGR++K+A Y P +SD A +R+ A+ + +LG G +A K
Sbjct: 841 HNFGLSDLHQMRGRVGRSNKKAFCYFITPPLIAMSDDARKRIEAIAQFSDLGSGLNIAMK 900
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS---------V 682
D+ IRG G + G +Q+G + +G D + ++L E+++++ E+ + + +
Sbjct: 901 DLEIRGAGDLLGGEQSGFINEIGFDTYQKILQEAITELKENEFSELYHTAEEDKTYLTDT 960
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
QID + P Y+N + + + NE ++ L + +L ++GK P L
Sbjct: 961 QIDTDFELLFPDTYVNRVAERLNLYNELSNLPNEE--ALQVYERNLIDRFGKLPPQAIDL 1018
Query: 743 LKKLYVRRMAADIGITK-IYASGKMVG 768
L + V+ +A +GI K + +GKM G
Sbjct: 1019 LNSVRVKWLATRMGIEKLVMKNGKMTG 1045
>gi|192358851|ref|YP_001982241.1| transcription-repair coupling factor [Cellvibrio japonicus Ueda107]
gi|190685016|gb|ACE82694.1| transcription-repair coupling protein Mfd [Cellvibrio japonicus
Ueda107]
Length = 1184
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 240/617 (38%), Positives = 376/617 (60%), Gaps = 15/617 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS-RMLYRYN 212
L+ G VVH G+G++ G++ + T E++ +EYAD AKL V S ++ RY+
Sbjct: 515 LKIGAPVVHIDHGVGRYRGLETITVDNQTN--EFLTLEYADD-AKLYVPVTSLHLISRYS 571
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK-NPAI 271
+ P L KL + +W++ K K I+ +L+E+Y R +K +P A
Sbjct: 572 GAEDDLAP--LHKLG-SESWQKAKRKAAEQIRDTAAELLEVYARRAARKGFAFPDPQTAY 628
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
A F+A FP+E TPDQ++A V +D+ + PMDRL+CGDVGFGKTEVA+RA F AG
Sbjct: 629 AAFSASFPFEETPDQQRAIEAVVKDMLSPK-PMDRLVCGDVGFGKTEVAMRAAFVASHAG 687
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +LAPT +LA+QH++ + +RF+++P I + +LSRF++ E + L+ + G ++IIV
Sbjct: 688 KQVAILAPTTLLAQQHYESLKDRFAEWP-ITIEVLSRFRTTKEVNQVLERLAEGKVDIIV 746
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL + + NLGLL++DEE RFGV+QKE+I + + +D+LTL+ATPIPRTL +++
Sbjct: 747 GTHKLLQPDIKFKNLGLLIIDEEHRFGVRQKEQIKALRAEIDILTLTATPIPRTLNMSMA 806
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I+TPP RL +KT + + + + AI E+ RGGQV+Y+ + +E+
Sbjct: 807 GIRDLSIIATPPARRLSVKTFVRTYDEAVIKEAILREILRGGQVYYLHNEVDTIEKVARE 866
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQ+ P IA+ HGQ R LE M F I++CT I+E+G+DI +ANTII+
Sbjct: 867 LQELIPEARIAVGHGQMRERDLERVMSDFYHKRFNIMVCTTIIETGIDIPSANTIIINRA 926
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+FGLAQL+QLRGRVGR+ +A+AYL P++ ++D A++RL A+ +LG GF LA
Sbjct: 927 DKFGLAQLHQLRGRVGRSHHQAYAYLLTPERRAMTDDAVKRLEAISAAEDLGAGFTLATY 986
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY---KSVQIDINI 688
DM IRG G + GE+Q+G + +G L+ EML ++ + + + +S+ I++ I
Sbjct: 987 DMEIRGAGELLGEEQSGQIQTIGFSLYMEMLDRAVKAIRQGKQADIEQALKESIDINLRI 1046
Query: 689 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+PS+Y+ + + +V A ++ L + ++G P +++ L + +
Sbjct: 1047 PALIPSDYLPDVH--LRLVMYKRLANAENAESLRDLQVEMIDRFGLLPDAVKNLFRVTQI 1104
Query: 749 RRMAADIGITKIYASGK 765
+ A +GITKI A+ +
Sbjct: 1105 KITAEQLGITKIEANSR 1121
>gi|424722744|ref|ZP_18151769.1| transcription-repair coupling factor [Enterococcus faecalis ERV73]
gi|402400926|gb|EJV33731.1| transcription-repair coupling factor [Enterococcus faecalis ERV73]
Length = 1189
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 240/599 (40%), Positives = 376/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 501 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 558
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 559 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 614
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 615 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 673
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 674 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 732
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPR
Sbjct: 733 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPR 792
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 793 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 852
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE ++ F +G IL+ T I+E+G+DI NAN
Sbjct: 853 IERKVEELQALVPDARIAYAHGQMTEVQLENSLFDFIEGQYDILVTTTIIETGVDIPNAN 912
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 913 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 972
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 973 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1031
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1032 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1088
>gi|269202123|ref|YP_003281392.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ED98]
gi|296276156|ref|ZP_06858663.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MR1]
gi|262074413|gb|ACY10386.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ED98]
Length = 1168
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|384549367|ref|YP_005738619.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus JKD6159]
gi|302332216|gb|ADL22409.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus JKD6159]
Length = 1168
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIEEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|417900633|ref|ZP_12544514.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21266]
gi|341847465|gb|EGS88645.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21266]
Length = 1168
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|219850580|ref|YP_002465013.1| transcription-repair coupling factor [Chloroflexus aggregans DSM
9485]
gi|219544839|gb|ACL26577.1| transcription-repair coupling factor [Chloroflexus aggregans DSM
9485]
Length = 1182
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 264/646 (40%), Positives = 377/646 (58%), Gaps = 45/646 (6%)
Query: 153 SLRSGDYVVHKKVGIGKFVG-IKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYR 210
SL+ GDYVVH + GI F G I+ V + V EY+ + YA + +PV Q R+ R
Sbjct: 489 SLKPGDYVVHIEHGIAVFDGMIRRTVGE---VEREYLVLRYAGEDKIYVPVDQIDRV-TR 544
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---PK 267
Y + P TL++L T WER K K + A+Q++ +L+ LY R Q +P + P
Sbjct: 545 YIGAGDG--PPTLTRLG-TQDWERTKRKVRAAVQELAEELLHLYAQR--QLKPGFAFSPD 599
Query: 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
N E A FPY T DQ +A +V+ D+ ER PMDRL+CGDVGFGKTEVALRA F
Sbjct: 600 NEWQRELEASFPYLETDDQLRAIAEVKADM-ERPIPMDRLVCGDVGFGKTEVALRAAFKA 658
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V GKQ +L PT VLA+QHFD +R + +P + V +LSRF+S E++ + + G +
Sbjct: 659 VQDGKQVAILVPTTVLAQQHFDTFRKRMAAFP-VTVEMLSRFRSPKEQDGIVRDLARGKI 717
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+II+GTH LL + VV+ +LGL++VDEEQRFGV+ KE++ + VDVLTL+ATPIPRTL+
Sbjct: 718 DIIIGTHRLLSNDVVFRDLGLVIVDEEQRFGVRHKERLKQLRAEVDVLTLTATPIPRTLH 777
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+AL+G RD S+I+TPP +RLPIKT++ + I+ EL+R GQV++V R++ +
Sbjct: 778 MALSGIRDLSVINTPPEDRLPIKTYVVPADDHLIQEVIRRELEREGQVYFVHNRVQSIYH 837
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ L++ P IA+ HGQ R LE M F +G +L+CT I+ESGLD+ NANTII
Sbjct: 838 VAERLRRLVPEARIAVGHGQLAERNLERVMMDFFEGRYDVLVCTTIIESGLDVPNANTII 897
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ D +GLAQLYQLRGRVGR A+AYL Y + ++ A +RL A++E ELG GF+
Sbjct: 898 IDDATHYGLAQLYQLRGRVGRGATRAYAYLLYNPAAPMTSDARQRLEAIQEATELGAGFR 957
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCV--------- 674
+A +D+ IRG G + G +Q+G + VG DL+ +L +++ + VDE V
Sbjct: 958 VAMRDLEIRGAGNLLGSEQSGHIAAVGFDLYSRLLEQAVQQLKRDVDELTVDRGFTPSPT 1017
Query: 675 -----ISVPYKS--------VQIDININPRLPSEYINHLENPMEMVNEAEKAAE-QDIWC 720
+ P S V ID+ + LP YI + + A +++
Sbjct: 1018 EMAAGLCAPTVSEKVLVAPLVTIDLPLTAYLPPTYIADETVRLAVYQRMIDADTIEEVRS 1077
Query: 721 LMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKM 766
L Q E + R G P + L+ L +R +A G+ I G +
Sbjct: 1078 LRQ--ELIDRFGGPLPEPVLHLILWLQIRFLALQAGVASITTEGDV 1121
>gi|15923493|ref|NP_371027.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus Mu50]
gi|15926180|ref|NP_373713.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus N315]
gi|156978831|ref|YP_001441090.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus Mu3]
gi|253315228|ref|ZP_04838441.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|255005296|ref|ZP_05143897.2| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|282895111|ref|ZP_06303331.1| transcription-repair coupling factor [Staphylococcus aureus A8117]
gi|417800581|ref|ZP_12447696.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21318]
gi|417892289|ref|ZP_12536340.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21201]
gi|418429542|ref|ZP_13002476.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS3a]
gi|418567846|ref|ZP_13132209.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21272]
gi|418662415|ref|ZP_13223965.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-122]
gi|418885796|ref|ZP_13439947.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1150]
gi|418914966|ref|ZP_13468935.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|443636492|ref|ZP_21120599.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21236]
gi|81832560|sp|Q7A7B2.1|MFD_STAAN RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|81855990|sp|Q99WA0.1|MFD_STAAM RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|13700393|dbj|BAB41691.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus N315]
gi|14246271|dbj|BAB56665.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus Mu50]
gi|156720966|dbj|BAF77383.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus Mu3]
gi|282762529|gb|EFC02669.1| transcription-repair coupling factor [Staphylococcus aureus A8117]
gi|334277853|gb|EGL96070.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21318]
gi|341857910|gb|EGS98717.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21201]
gi|371981517|gb|EHO98691.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21272]
gi|375036466|gb|EHS29537.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-122]
gi|377727608|gb|EHT51713.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1150]
gi|377755318|gb|EHT79219.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|387721177|gb|EIK09058.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS3a]
gi|443407668|gb|ELS66213.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21236]
Length = 1168
Score = 437 bits (1125), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|417797763|ref|ZP_12444955.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21305]
gi|334266234|gb|EGL84717.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21305]
Length = 1168
Score = 437 bits (1125), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|258510200|ref|YP_003183634.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257476926|gb|ACV57245.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 1183
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 245/618 (39%), Positives = 378/618 (61%), Gaps = 24/618 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK---FDVQKDSTVPIEYVFIEYADGMA-KLPVKQASRMLY 209
L GDYVVH GIG+++GIK D +++ +Y+++ YA G + +PV Q + +
Sbjct: 503 LNVGDYVVHVNHGIGRYMGIKTLEVDGRRN-----DYLYLSYAGGDSLYVPVDQIDQ-IQ 556
Query: 210 RYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---P 266
RY E K P+ S S + W++ K + K +++ + DL++LY R + P + P
Sbjct: 557 RYIGSGE-KEPKLHSLGS--SEWQKTKNRVKKSVRDIAGDLLKLYAKR--EATPGHAFSP 611
Query: 267 KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
P A+F FPYE TPDQ +A +++RD+ E+ PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 612 DTPWQADFENMFPYEETPDQLRAIAEIKRDM-EKPRPMDRLLCGDVGYGKTEVAMRAAFK 670
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
V GKQ VL PT VLA+QH++ ERF+ +P +K+ +LSRF+++ E +E L +K G
Sbjct: 671 AVMDGKQVAVLVPTTVLAQQHYETFKERFAGFP-VKIEMLSRFRTRKETQEVLKGLKEGT 729
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
++I++GTH LL + V + +LGLL+VDEEQRFGV KEK+ + +VD LTL+ATPIPRTL
Sbjct: 730 IDIVIGTHRLLQNSVQFKDLGLLIVDEEQRFGVTHKEKLKQLRANVDCLTLTATPIPRTL 789
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
++++ G RD S+I TPP R P++T++ +++ V AI+ EL RGGQV++V ++ +
Sbjct: 790 HMSMLGVRDLSIIETPPENRFPVQTYVVEYNEGLVKEAIERELARGGQVYFVYNDVQTIH 849
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
+ +Q P +++AHGQ +LE M F +G +L+ T I+E+GLDI N NT+
Sbjct: 850 RMAERVQSLVPDARVSVAHGQMAEAELERVMLDFLEGEYDVLVTTTIIETGLDIPNVNTL 909
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
IV D +FGL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RLAA++E ELG GF
Sbjct: 910 IVYDADKFGLSQLYQLRGRVGRSNRIAYAYFTYQPAKVLSEVAEKRLAAIKEFTELGSGF 969
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 686
++A +D+ IRG G + G +Q G + +VG D++ E+L +++ ++ + P + ID+
Sbjct: 970 KIAMRDLSIRGAGNLLGAEQHGFINSVGFDMYTELLQQAIRELRGEQ-LEKPVEPT-IDV 1027
Query: 687 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
+ +P YI+ + M A Q + + L +YG P + LL
Sbjct: 1028 PVEAYIPDTYISDPSQKVAMYKRFR--AIQAVSEADDLEDELIDRYGDPPQEVRNLLDVT 1085
Query: 747 YVRRMAADIGITKIYASG 764
++ +A I G
Sbjct: 1086 RLKSLAMQAHADHIATQG 1103
>gi|399046084|ref|ZP_10738621.1| transcription-repair coupling factor Mfd [Brevibacillus sp. CF112]
gi|398055869|gb|EJL47919.1| transcription-repair coupling factor Mfd [Brevibacillus sp. CF112]
Length = 1182
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 244/613 (39%), Positives = 376/613 (61%), Gaps = 21/613 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK----FDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRML 208
L+ GD+VVH GIGK++GI+ + KD Y+ I+YA G + +P+ Q +
Sbjct: 502 LKPGDFVVHVNHGIGKYLGIETKEILGIHKD------YLHIQYAAGDSLFVPIDQIDH-V 554
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PK 267
+Y + +E +P+ S T W+R K K + +++ + DL++LY R + P
Sbjct: 555 QKY-VASEEAQPKIYS--LGGTEWKRVKNKVQSSVKDIAEDLIKLYAAREAAVGHAFSPD 611
Query: 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
EF A FPY+ TPDQ +A +V+ D+ ER PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 612 TTEQREFEAMFPYQETPDQLRAIAEVKADM-ERRRPMDRLVCGDVGYGKTEVAIRAAFKA 670
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V GKQ VL PT +LA+QH++ ERF++YP I+V +LSRF+S+ E+ L +K G +
Sbjct: 671 VMDGKQVAVLVPTTILAQQHYETFRERFAEYP-IRVEVLSRFRSRKEQNATLKGLKEGTV 729
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
++++GTH LL +++ LGLL+VDEEQRFGV KEK+ K +VDV+TL+ATPIPRTL+
Sbjct: 730 DVVIGTHRLLSKDLMFRELGLLIVDEEQRFGVSHKEKLKQIKTNVDVITLTATPIPRTLH 789
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+++ G RD S+I TPP R P++T++ +S V AI+ EL R GQVF++ +++G+E+
Sbjct: 790 MSMLGVRDLSVIETPPENRFPVQTYVMEYSPALVREAIERELARDGQVFFLYNQVQGIEQ 849
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ + P IA+AHGQ +LE + F +G +L+ T I+E+G+DI N NT+I
Sbjct: 850 MAEQISMLVPDARIAVAHGQMNESELEGVILDFLEGNFDVLVSTTIIETGVDIPNVNTLI 909
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ + + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF+
Sbjct: 910 IYNADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFK 969
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDIN 687
+A +D+ IRG G + G +Q G + VG DL+ +ML E++ ++ V V+I++
Sbjct: 970 IAMRDLSIRGAGNLLGAEQHGFINTVGFDLYSQMLKEAIDELKGE-VKQEAVTPVEINLQ 1028
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
++ +PS YI +EM + A + + E L ++G P ++ LL
Sbjct: 1029 LDAYIPSMYITDSRQKIEMYKKF--VAVSTLEDVDDLAEELLDRFGPVPKPVDNLLTISR 1086
Query: 748 VRRMAADIGITKI 760
+R A IT+I
Sbjct: 1087 LRVYALQHHITEI 1099
>gi|82750210|ref|YP_415951.1| transcription-repair coupling factor [Staphylococcus aureus RF122]
gi|123768536|sp|Q2YVY2.1|MFD_STAAB RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|82655741|emb|CAI80140.1| transcription-repair coupling factor [Staphylococcus aureus RF122]
Length = 1168
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|374596374|ref|ZP_09669378.1| transcription-repair coupling factor [Gillisia limnaea DSM 15749]
gi|373871013|gb|EHQ03011.1| transcription-repair coupling factor [Gillisia limnaea DSM 15749]
Length = 1135
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 265/720 (36%), Positives = 403/720 (55%), Gaps = 43/720 (5%)
Query: 137 SGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADG 195
SGY S+K + +L GDYV H GIG+F G+ K DV+ I+ V+ E
Sbjct: 425 SGYAKKQAISFK-ELSNLEVGDYVTHIDHGIGRFGGLQKIDVEGKMQEAIKLVYGER--D 481
Query: 196 MAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYL 255
+ L + + + ++N + +P + KL + AW+ K K K ++ + +L+ELY
Sbjct: 482 ILYLSIHSLHK-ISKFN--GKDGKPPKIYKLG-SNAWKNLKEKTKSRVKHIAYNLIELYA 537
Query: 256 HRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGF 314
R QK + P + E A F YE TPDQ A V+ D+ E E PMDRL+CGDVGF
Sbjct: 538 KRRLQKGFAFGPDSYLQHELEASFIYEDTPDQTTATAAVKEDM-ETERPMDRLVCGDVGF 596
Query: 315 GKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAE 374
GKTEVA+RA F V GKQ VL PT +LA QH +ER +P + V L+RF++ E
Sbjct: 597 GKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHHKTFTERLKDFP-VTVDYLNRFRTAKE 655
Query: 375 KEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDV 434
+ E L ++ G ++II+GTH L+ V + +LGLL+VDEEQ+FGV K+K+ + K +VD
Sbjct: 656 RRETLADLESGRVDIIIGTHQLVSKAVKFKDLGLLIVDEEQKFGVAVKDKLKTIKENVDT 715
Query: 435 LTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQ 494
LTL+ATPIPRTL +L RD S I+T PP R PI+T + F++E + AI YE+ RGGQ
Sbjct: 716 LTLTATPIPRTLQFSLMAARDLSTITTAPPNRYPIETQVVRFTEETIRDAISYEIQRGGQ 775
Query: 495 VFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIV 554
VF++ RI+ ++E +Q+ P + I HGQ ++LE M F G +L+ T IV
Sbjct: 776 VFFIHNRIENIKEVAGMIQRLVPDAKVGIGHGQMEGKKLENLMLAFMNGEFDVLVSTTIV 835
Query: 555 ESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLA 614
ESGLD+ NANTI + + FGL+ L+Q+RGRVGR++K+A Y P S ++D A +R+
Sbjct: 836 ESGLDVTNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTDDARKRIT 895
Query: 615 ALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCV 674
ALE+ ELG GF +A KD+ IRG G + G +Q+G + +G D + ++L E++ ++ E+
Sbjct: 896 ALEQFSELGSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIEELKENEF 955
Query: 675 ISVPYKS-----------VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQ 723
+ +K+ QID + P +YIN++ + + E ++ L +
Sbjct: 956 KVLYHKNEDIESKTFVKDTQIDADFELLFPDDYINNISERLNLYTELNGVKTEE--ELQK 1013
Query: 724 FTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITK-IYASGKMVG----------MKTN 772
F L ++G+ P LL + ++ +A+ IG+ K I GK++G +T
Sbjct: 1014 FEAKLVDRFGELPTQAADLLNSVRIKWIASHIGLEKIIMKQGKLIGYFIADQQSGFYQTQ 1073
Query: 773 MNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQL--LNWIFQCLAELYASLP 830
KV + + + H +S T + + +A L L L E++ ++ + L L LP
Sbjct: 1074 AFTKVLQYV------QTHSHSCTMKEKKTRAGLRLLLTFEKITSIDRALKVLEPLKVPLP 1127
>gi|255325397|ref|ZP_05366501.1| transcription-repair coupling factor [Corynebacterium
tuberculostearicum SK141]
gi|255297483|gb|EET76796.1| transcription-repair coupling factor [Corynebacterium
tuberculostearicum SK141]
Length = 1212
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 249/633 (39%), Positives = 375/633 (59%), Gaps = 20/633 (3%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQK-DSTVPIEYVFIEYADGMAKLPVKQAS 205
KVDP +L+ GD+VVH+ GIGKF+ + + +Q D T EY+ +EYA P Q
Sbjct: 502 KVDPLALKQGDFVVHETHGIGKFLKMAERTIQSGDETSRREYIVLEYAPSKRGQPADQLW 561
Query: 206 RMLYRYNLPNETKRPRT--LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
+ +L ++ + LSK+ + W+ K K + A++++ +L+ELY R Q P
Sbjct: 562 VPMDSLDLLSKYTGGESPHLSKMGGSD-WKNTKKKARAAVREIAGELVELYAKR--QAAP 618
Query: 264 PY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320
+ P NP AE FP+ T DQ A V+ D+ E PMDR++ GDVG+GKTEVA
Sbjct: 619 GHQFSPDNPWQAEMEDNFPFVETEDQMLAIDAVKHDM-ESTVPMDRVVVGDVGYGKTEVA 677
Query: 321 LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380
+RA F V G Q VL PT +LA+QHFD SER + +P +K+ +LSRF SK E ++
Sbjct: 678 IRAAFKAVQDGMQVAVLVPTTLLAQQHFDTFSERMTGFP-VKIEVLSRFTSKKEAKDIFK 736
Query: 381 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSAT 440
+ G ++I+VGTH LL + V + NLGL+VVDEEQRFGV+ KE I + K SVDVLT+SAT
Sbjct: 737 GLADGSVDIVVGTHRLLQTGVHWKNLGLIVVDEEQRFGVEHKEHIKALKASVDVLTMSAT 796
Query: 441 PIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLP 500
PIPRTL +++ G R+ S I TPP +R P+ T++ A+ ++V +AI+ EL R GQ F++
Sbjct: 797 PIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYEDKQVAAAIRRELLRDGQTFFIHN 856
Query: 501 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
++ +E+ L+ P + +AHGQ LE+T++ F +L+CT IVE+GLDI
Sbjct: 857 KVSDIEKKARELRDLVPEARVVVAHGQMNEEVLEQTVQGFWDREYDVLVCTTIVETGLDI 916
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP + L++ + +RLA + +
Sbjct: 917 ANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQNN 976
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML------FESLSKVDEHCV 674
+LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ F+SL++ + V
Sbjct: 977 DLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVETFKSLARGEAPTV 1036
Query: 675 ISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGK 734
K ++ID+ ++ +P YI+ +E+ + AA Q+ L E + ++G
Sbjct: 1037 TDEGPKEIRIDLPVDAHIPEGYIDSERLRLEVYRKL--AASQNDDDLKAVIEEMEDRFGP 1094
Query: 735 EPYSMEILLKKLYVRRMAADIGITKIYASGKMV 767
P + LL +R A GI+ I G V
Sbjct: 1095 LPQEVLRLLSVARLRHQARRAGISDITVQGTRV 1127
>gi|433543187|ref|ZP_20499599.1| transcription-repair coupling factor [Brevibacillus agri BAB-2500]
gi|432185546|gb|ELK43035.1| transcription-repair coupling factor [Brevibacillus agri BAB-2500]
Length = 1182
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 244/613 (39%), Positives = 376/613 (61%), Gaps = 21/613 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK----FDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRML 208
L+ GD+VVH GIGK++GI+ + KD Y+ I+YA G + +P+ Q +
Sbjct: 502 LKPGDFVVHVNHGIGKYLGIETKEILGIHKD------YLHIQYAAGDSLFVPIDQIDH-V 554
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PK 267
+Y + +E +P+ S T W+R K K + +++ + DL++LY R + P
Sbjct: 555 QKY-VASEEAQPKIYS--LGGTEWKRVKNKVQSSVKDIAEDLIKLYAAREAAVGHAFSPD 611
Query: 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
EF A FPY+ TPDQ +A +V+ D+ ER PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 612 TTEQREFEAMFPYQETPDQLRAIAEVKADM-ERRRPMDRLVCGDVGYGKTEVAIRAAFKA 670
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V GKQ VL PT +LA+QH++ ERF++YP I+V +LSRF+S+ E+ L +K G +
Sbjct: 671 VMDGKQVAVLVPTTILAQQHYETFRERFAEYP-IRVEVLSRFRSRKEQNATLKGLKEGTV 729
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
++++GTH LL +++ LGLL+VDEEQRFGV KEK+ K +VDV+TL+ATPIPRTL+
Sbjct: 730 DVVIGTHRLLSKDLMFRELGLLIVDEEQRFGVSHKEKLKQIKTNVDVITLTATPIPRTLH 789
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+++ G RD S+I TPP R P++T++ +S V AI+ EL R GQVF++ +++G+E+
Sbjct: 790 MSMLGVRDLSVIETPPENRFPVQTYVMEYSPALVREAIERELARDGQVFFLYNQVQGIEQ 849
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ + P IA+AHGQ +LE + F +G +L+ T I+E+G+DI N NT+I
Sbjct: 850 MAEQISMLVPDARIAVAHGQMNESELEGVILDFLEGNFDVLVSTTIIETGVDIPNVNTLI 909
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ + + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF+
Sbjct: 910 IYNADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFK 969
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDIN 687
+A +D+ IRG G + G +Q G + VG DL+ +ML E++ ++ V V+I++
Sbjct: 970 IAMRDLSIRGAGNLLGAEQHGFINTVGFDLYSQMLKEAIDELKGE-VKQEAVTPVEINLQ 1028
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
++ +PS YI +EM + A + + E L ++G P ++ LL
Sbjct: 1029 LDAYIPSMYITDSRQKIEMYKKF--VAVSTLEDVDDLAEELLDRFGPVPKPVDNLLTISR 1086
Query: 748 VRRMAADIGITKI 760
+R A IT+I
Sbjct: 1087 LRVYALQHHITEI 1099
>gi|390457082|ref|ZP_10242610.1| transcription-repair-coupling factor TRCF; ATP-dependent helicase mfd
[Paenibacillus peoriae KCTC 3763]
Length = 1175
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 234/559 (41%), Positives = 358/559 (64%), Gaps = 19/559 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQAS 205
++ YS L+ GDYVVH+ GIGK++GI + + +Y+ I YA G +P++Q
Sbjct: 482 RIKSYSELKVGDYVVHQNHGIGKYMGI--GTLEVGGIHKDYMHILYAGGDKLSVPIEQID 539
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
++ +Y + +E K P+ + KL W R K+K + ++Q + DL++LY R Q P +
Sbjct: 540 -LIQKY-VGSEEKEPK-IYKLG-GNEWTRVKSKVRSSVQDIADDLIKLYAER--QSAPGF 593
Query: 266 P---KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+P EF FPYE T DQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+R
Sbjct: 594 AFEKDSPEQQEFEDMFPYEETRDQVRAIGEIKKDM-EQGRPMDRLLCGDVGYGKTEVAIR 652
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F GKQ VL PT +LA+QH++ ERFS YP + +LSRF+S+ E+ E +
Sbjct: 653 AAFKSAIEGKQVAVLVPTTILAQQHYETFRERFSGYP-FNIQVLSRFRSRKEQNETTKGV 711
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
+ G ++I++GTH LL +V+ +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPI
Sbjct: 712 RQGTVDIVIGTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPI 771
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T++ S+ V AI+ E+ RGGQV+Y+ R+
Sbjct: 772 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIEREMARGGQVYYLYNRV 831
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+G++E + P + + HGQ +LE+T+ F G +L+ T+I+E+G+DI N
Sbjct: 832 QGIQEMAAEINALVPEAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPN 891
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E EL
Sbjct: 892 VNTLIVHDADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTEL 951
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCV----ISVP 678
G GF++A +D+ IRG G + G +Q G + +VG DL+ +ML E ++K + +S
Sbjct: 952 GSGFKIAMRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINKRKVSVLGEEDLSNR 1011
Query: 679 YKSVQIDININPRLPSEYI 697
S ID++++ LP +YI
Sbjct: 1012 NWSTSIDLSVDAYLPGDYI 1030
>gi|347751665|ref|YP_004859230.1| transcription-repair coupling factor [Bacillus coagulans 36D1]
gi|347584183|gb|AEP00450.1| transcription-repair coupling factor [Bacillus coagulans 36D1]
Length = 1179
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 254/681 (37%), Positives = 408/681 (59%), Gaps = 20/681 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L GDYVVH GIGK++GI + + V +Y+ I+Y G KL PV Q
Sbjct: 491 RIKNYSELNVGDYVVHVNHGIGKYLGIV--TLEINGVHKDYLHIKY-QGSDKLYVPVDQI 547
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
L + + +E K P+ L KL + W+R K K + +IQ + DL++LY R K
Sbjct: 548 D--LVQKYVGSEGKEPK-LYKLG-GSEWKRVKRKVQSSIQDIADDLVKLYAEREASKGFA 603
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P EF A FPY+ T DQ ++ +++RD+ E+E PMDRL+CGDVG+GKTEVA+RA
Sbjct: 604 FSPDGDMQREFEAAFPYKETEDQLRSIQEIKRDM-EKEKPMDRLLCGDVGYGKTEVAIRA 662
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + GKQ +L PT +LA+QHF+ V+ERF YP IKVGLLSRF+++ E+ E + ++
Sbjct: 663 AFKAMMDGKQVAMLVPTTILAQQHFETVTERFHGYP-IKVGLLSRFRTRKEQNETIKGLR 721
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G +++++GTH LL + +++LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 722 NGTIDMVIGTHRLLSKDIQFHDLGLLIIDEEQRFGVSHKEKIKKLKTNVDVLTLTATPIP 781
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + V AI+ EL R GQV+++ RI+
Sbjct: 782 RTLHMSMVGVRDLSVIETPPENRFPVQTYVLEYNDQMVREAIERELARDGQVYFLYNRIE 841
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E + + + P +A AHG+ QLE + F +G +L+ T I+E+G+DI N
Sbjct: 842 DIERKAEEIARLVPDARVAYAHGRMTESQLESVIFGFLEGEYDVLVTTTIIETGVDIPNV 901
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ + +RL A++E ELG
Sbjct: 902 NTLIVNDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLAEASEKRLQAIKEFTELG 961
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ +
Sbjct: 962 SGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEARKGADGEEEKLPPFE 1021
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+++ I+ +P YI +EM + + + + + ++G P + L
Sbjct: 1022 VELEIDAYIPDAYIKDGYQKIEMYKRFRGI--ETLEDIEELKVEMIDRFGDYPQQVSDLF 1079
Query: 744 KKLYVRRMAADIGITKIYASGKMVG--MKTNMNKKVFKMMIDSMTSEVHRNS-LTFEGDQ 800
++ A + ++ I + +++ M +K+V + + + R++ EG+Q
Sbjct: 1080 TIAEMKVYAKEAMLSSIKQNKQLITILMSEKGSKQVNGPKVVDIVRQYGRSAGFGMEGNQ 1139
Query: 801 IKAELLLELPREQLLNWIFQC 821
+K + L++ + + W++ C
Sbjct: 1140 LK--ITLDIKKSKGHEWLYTC 1158
>gi|319953407|ref|YP_004164674.1| transcription-repair coupling factor [Cellulophaga algicola DSM
14237]
gi|319422067|gb|ADV49176.1| transcription-repair coupling factor [Cellulophaga algicola DSM
14237]
Length = 1125
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 248/630 (39%), Positives = 367/630 (58%), Gaps = 25/630 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYV H G+GKF G+ K DV+ I+ V+ E + + + ++
Sbjct: 434 LDIGDYVTHMDHGVGKFGGLQKIDVEGKKQEAIKLVYGER--DILYVSIHSLHKI---SK 488
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ P + KL + AW++ K K K ++K+ DL+++Y R K Y P
Sbjct: 489 FTGKDGTPPKIYKLG-SGAWKKVKEKAKSRVKKIAFDLIQIYAKRRTLKGFQYAPDGYLQ 547
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E A F YE TPDQ KA D++RD+ E E PMDRLICGDVGFGKTEVA+RA F V+ G
Sbjct: 548 HELEASFIYEDTPDQSKATEDIKRDM-ESERPMDRLICGDVGFGKTEVAIRAAFKAVANG 606
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT +LA QH ER P + V L+RF++ EK++ L+ ++ G ++II+
Sbjct: 607 KQVAVLVPTTILAFQHNRTFKERLKDMP-VTVDYLNRFRTTKEKKDTLERLEAGKVDIII 665
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH L+ V + +LGLL+VDEEQ+FGV K+K+ S K +VDVLTL+ATPIPRTL +L
Sbjct: 666 GTHQLVNKNVKFKDLGLLIVDEEQKFGVAVKDKLKSIKENVDVLTLTATPIPRTLQFSLM 725
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD S+I+T PP R PI++ + FS+E + A+ YE+ RGGQVF++ R++ ++E
Sbjct: 726 AARDLSVINTAPPNRYPIQSDVIRFSEETIRDAVSYEIQRGGQVFFIHNRVENIKEVAGL 785
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I I HGQ ++LE M F G +L+ T I+ESGLD+ NANTI + +
Sbjct: 786 IQRLVPDAKIGIGHGQMEGKKLEILMLAFINGEFDVLVSTTIIESGLDVSNANTIFINNA 845
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+ L+Q+RGRVGR++K+A Y P +++ A +R+ ALE+ ELG GF +A K
Sbjct: 846 NNFGLSDLHQMRGRVGRSNKKAFCYFITPPYEVMTSDARKRIEALEQFTELGSGFNIAMK 905
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDE------------HCVISVPY 679
D+ IRG G I G +Q+G + ++G D + ++L E++ ++ E H V
Sbjct: 906 DLEIRGAGDILGGEQSGFINDIGFDAYQKILAEAVEELKENEFKDLYEEIEGHTHEKVFV 965
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
K QID + P +YIN++ + + +++ L +F L ++G+ P
Sbjct: 966 KETQIDADFELLFPDDYINNITERLNLYTALNLITDEE--GLKKFELDLIDRFGELPIEA 1023
Query: 740 EILLKKLYVRRMAADIGITKIYA-SGKMVG 768
E LL + ++ +A IG+ KI GKM+G
Sbjct: 1024 EDLLNSVRIKWIANAIGLEKIVMKQGKMIG 1053
>gi|258429620|ref|ZP_05688294.1| transcription-repair-coupling factor [Staphylococcus aureus A9299]
gi|257849679|gb|EEV73646.1| transcription-repair-coupling factor [Staphylococcus aureus A9299]
Length = 1168
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|376292930|ref|YP_005164604.1| transcription-repair coupling factor [Corynebacterium diphtheriae
HC02]
gi|372110253|gb|AEX76313.1| transcription-repair coupling factor [Corynebacterium diphtheriae
HC02]
Length = 1266
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 256/706 (36%), Positives = 410/706 (58%), Gaps = 41/706 (5%)
Query: 147 YKVDPYSLRSGDYVVHKKVGIGKFVGIKFDV--QKDSTVPIEYVFIEYADGMAKLPVKQ- 203
++VDP +L++GDYVVH+ GIG+F+ + V D T EY+ +EYA P Q
Sbjct: 512 HRVDPLALKTGDYVVHETHGIGRFLKMTERVIQSGDETSRREYIVLEYAASKRGQPADQL 571
Query: 204 -----ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRL 258
+ ML +Y ++P TLSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 572 YVPMDSLDMLSKYV---GGEKP-TLSKMGGSD-WKNTKKKARAAVREIAGELVELYAKR- 625
Query: 259 KQKRPPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFG 315
Q P + P +P E FPY T DQ A V+ D+ E+ +PMDR++ GDVG+G
Sbjct: 626 -QSAPGHAFAPDSPWQHEMEDNFPYVETEDQMLAIDAVKADM-EKPSPMDRVVVGDVGYG 683
Query: 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 375
KTEVA+RA F V G+Q +VL PT +LA+QH ER + +P + + LSRF S ++
Sbjct: 684 KTEVAVRAAFKAVQDGRQVVVLVPTTLLAQQHLSTFEERMAGFP-VTIKGLSRFTSPSDS 742
Query: 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVL 435
+E L + G ++I++GTH LL + V + NLGL++VDEEQRFGV+ KE I + + VDVL
Sbjct: 743 KEILKGLADGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVL 802
Query: 436 TLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQV 495
T+SATPIPRTL +++ G R+ S I TPP +R PI T++ A ++V +AI+ EL R GQV
Sbjct: 803 TMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQVAAAIRRELLRDGQV 862
Query: 496 FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555
FYV ++ +E+ L++ P I +AHGQ LE+T++ F +L+CT IVE
Sbjct: 863 FYVHNKVSDIEKKARELRELVPEARIVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVE 922
Query: 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA 615
+GLDI NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP + L++ + +RLA
Sbjct: 923 TGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTENSYDRLAT 982
Query: 616 LEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDE 671
+ + +LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D
Sbjct: 983 IAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADG 1042
Query: 672 HCVISVPY--KSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESL 728
+ K ++ID+ ++ +P +YIN +E+ + A A ++D+ ++ E +
Sbjct: 1043 KVADATEQGPKEIRIDLPVDAHIPEDYINSERLRLEVYRKLAASANDKDLALVV---EEM 1099
Query: 729 RRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMK----TNMNKKVFKMMIDS 784
+ ++G P+ ++ LL +R +A G++ I G + + T+ + K + S
Sbjct: 1100 KDRFGPVPHEVKRLLAVSRLRHLARATGLSDIGVQGTRIKLHPVELTDSKQVRLKRLAPS 1159
Query: 785 MTSEVHRNSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
T ++ EG ++ + L ++ +LL W+ +AE++
Sbjct: 1160 ATYRAAAKAIQLPFPKEGAKVTDKQLRDV---ELLQWVADFIAEMF 1202
>gi|418312101|ref|ZP_12923612.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21334]
gi|365238776|gb|EHM79605.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21334]
Length = 1172
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|258424461|ref|ZP_05687340.1| transcription-repair coupling factor [Staphylococcus aureus A9635]
gi|417891608|ref|ZP_12535669.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21200]
gi|418281815|ref|ZP_12894614.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21202]
gi|418307986|ref|ZP_12919656.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21194]
gi|418888402|ref|ZP_13442540.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1524]
gi|418993215|ref|ZP_13540855.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG290]
gi|257845330|gb|EEV69365.1| transcription-repair coupling factor [Staphylococcus aureus A9635]
gi|341851835|gb|EGS92742.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21200]
gi|365172195|gb|EHM62923.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21202]
gi|365242702|gb|EHM83403.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21194]
gi|377747275|gb|EHT71240.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG290]
gi|377755246|gb|EHT79149.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1524]
Length = 1168
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|418658062|ref|ZP_13219807.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-111]
gi|375039367|gb|EHS32297.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-111]
Length = 1168
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|365839574|ref|ZP_09380809.1| TRCF domain protein [Anaeroglobus geminatus F0357]
gi|364564415|gb|EHM42182.1| TRCF domain protein [Anaeroglobus geminatus F0357]
Length = 669
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 254/622 (40%), Positives = 372/622 (59%), Gaps = 20/622 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
+ GDYVVH IGK+ GIK ++ D V +Y+ I YA + +P Q + +L RY
Sbjct: 1 MNKGDYVVHATHSIGKYTGIK-TIESDG-VHKDYLEIHYAGQDILYVPTDQLN-LLQRY- 56
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAI 271
+ NE + PR L K+ W++ + K + +I + L +LY R +P + P
Sbjct: 57 IGNEGEAPR-LHKMGGAD-WKKARAKAQKSIDSLAEKLADLYAKREIIDGYAFPPDTPFQ 114
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPYE TPDQ KA V++ + E+ PMD L+CGDVGFGKTEVA+RA F V G
Sbjct: 115 QEFEETFPYEETPDQLKAVAAVKKSM-EKPLPMDCLVCGDVGFGKTEVAIRAAFKAVMGG 173
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT VLA+QH+ +ERF + I+ +L+RF+S E++ L + G +I++
Sbjct: 174 KQVAVLVPTTVLAQQHYQTFTERFRPF-GIECDVLNRFRSLKERKAILTRLSEGKADILI 232
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTHS+L VV+ ++GLL+VDEEQRFGV QKEK S+ +DVLTLSATPIPRTL+++L
Sbjct: 233 GTHSILNKNVVFKDVGLLIVDEEQRFGVAQKEKWKSWATGIDVLTLSATPIPRTLHMSLV 292
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
R LI TPP ER+P++T+++A++ + V A+ E RGGQVF+V R+ +E
Sbjct: 293 HLRQLCLIETPPTERIPVQTYVTAYNADIVRDAVMREKRRGGQVFFVYNRVASIERMKAE 352
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L+ P + + +AHGQ LE TM F +G +L+C+++VE+GLDI NANTIIV D
Sbjct: 353 LEALLPDITVGMAHGQMPGSLLEATMFDFYEGNYDLLLCSSLVENGLDIANANTIIVYDA 412
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+FGL+QLYQ+RGRVGR+ + A+AY FY +LS+ A +RL A++E ELG GF++A +
Sbjct: 413 DRFGLSQLYQMRGRVGRSRRMAYAYFFYRRNKILSEVAEKRLQAVKEFTELGSGFKIAMR 472
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G +Q G++ +VG ++ ML +++++ P +++ +
Sbjct: 473 DLEIRGAGNLLGREQHGNIASVGFAMYVHMLETAIARLRGEETRERPPVRTVMEVQADAY 532
Query: 692 LPSEYINHLENPMEMVNE---AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+ YI H +EM E A+ D + E L +YGK + LLK +
Sbjct: 533 IDDAYIGHGGQKIEMYQRLALIETTAQLD-----ELEEELFDRYGKPTEPVRTLLKATRL 587
Query: 749 RRMAADIGITKIYASGKMVGMK 770
R A + IT+I S K G++
Sbjct: 588 RLCAQHLQITRI--SQKTAGLE 607
>gi|384134028|ref|YP_005516742.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339288113|gb|AEJ42223.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 1147
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 245/618 (39%), Positives = 378/618 (61%), Gaps = 24/618 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK---FDVQKDSTVPIEYVFIEYADGMA-KLPVKQASRMLY 209
L GDYVVH GIG+++GIK D +++ +Y+++ YA G + +PV Q + +
Sbjct: 510 LNVGDYVVHVNHGIGRYMGIKTLEVDGRRN-----DYLYLSYAGGDSLYVPVDQIDQ-IQ 563
Query: 210 RYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---P 266
RY E K P+ S S + W++ K + K +++ + DL++LY R + P + P
Sbjct: 564 RYIGSGE-KEPKLHSLGS--SEWQKTKNRVKKSVRDIAGDLLKLYAKR--EATPGHAFSP 618
Query: 267 KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
P A+F FPYE TPDQ +A +++RD+ E+ PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 619 DTPWQADFENMFPYEETPDQLRAIAEIKRDM-EKPRPMDRLLCGDVGYGKTEVAMRAAFK 677
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
V GKQ VL PT VLA+QH++ ERF+ +P +K+ +LSRF+++ E +E L +K G
Sbjct: 678 AVMDGKQVAVLVPTTVLAQQHYETFKERFAGFP-VKIEMLSRFRTRKETQEVLKGLKEGT 736
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
++I++GTH LL + V + +LGLL+VDEEQRFGV KEK+ + +VD LTL+ATPIPRTL
Sbjct: 737 IDIVIGTHRLLQNSVQFKDLGLLIVDEEQRFGVTHKEKLKQLRANVDCLTLTATPIPRTL 796
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
++++ G RD S+I TPP R P++T++ +++ V AI+ EL RGGQV++V ++ +
Sbjct: 797 HMSMLGVRDLSIIETPPENRFPVQTYVVEYNEGLVKEAIERELARGGQVYFVYNDVQTIH 856
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
+ +Q P +++AHGQ +LE M F +G +L+ T I+E+GLDI N NT+
Sbjct: 857 RMAERVQSLVPDARVSVAHGQMAEAELERVMLDFLEGEYDVLVTTTIIETGLDIPNVNTL 916
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
IV D +FGL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RLAA++E ELG GF
Sbjct: 917 IVYDADKFGLSQLYQLRGRVGRSNRIAYAYFTYQPAKVLSEVAEKRLAAIKEFTELGSGF 976
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 686
++A +D+ IRG G + G +Q G + +VG D++ E+L +++ ++ + P + ID+
Sbjct: 977 KIAMRDLSIRGAGNLLGAEQHGFINSVGFDMYTELLQQAIRELRGEQ-LEKPVEPT-IDV 1034
Query: 687 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
+ +P YI+ + M A Q + + L +YG P + LL
Sbjct: 1035 PVEAYIPDTYISDPSQKVAMYKRFR--AIQAVSEADDLEDELIDRYGDPPQEVRNLLDVT 1092
Query: 747 YVRRMAADIGITKIYASG 764
++ +A I G
Sbjct: 1093 RLKSLAMQAHADHIATQG 1110
>gi|21282187|ref|NP_645275.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MW2]
gi|49485367|ref|YP_042588.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MSSA476]
gi|297207394|ref|ZP_06923833.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300910353|ref|ZP_07127806.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus TCH70]
gi|418988923|ref|ZP_13536593.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1835]
gi|448741241|ref|ZP_21723209.1| transcription-repair coupling factor [Staphylococcus aureus
KT/314250]
gi|81827911|sp|Q6GBY5.1|MFD_STAAS RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|81847858|sp|Q8NXZ6.1|MFD_STAAW RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|21203623|dbj|BAB94323.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MW2]
gi|49243810|emb|CAG42235.1| putative transcription-repair coupling factor [Staphylococcus aureus
subsp. aureus MSSA476]
gi|296887957|gb|EFH26851.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300888342|gb|EFK83529.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus TCH70]
gi|377716817|gb|EHT40997.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1835]
gi|445548033|gb|ELY16291.1| transcription-repair coupling factor [Staphylococcus aureus
KT/314250]
Length = 1168
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|417903856|ref|ZP_12547690.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21269]
gi|341848904|gb|EGS90060.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21269]
Length = 1168
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|376242507|ref|YP_005133359.1| transcription-repair coupling factor [Corynebacterium diphtheriae
CDCE 8392]
gi|372105749|gb|AEX71811.1| transcription-repair coupling factor [Corynebacterium diphtheriae
CDCE 8392]
Length = 1266
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 256/706 (36%), Positives = 410/706 (58%), Gaps = 41/706 (5%)
Query: 147 YKVDPYSLRSGDYVVHKKVGIGKFVGIKFDV--QKDSTVPIEYVFIEYADGMAKLPVKQ- 203
++VDP +L++GDYVVH+ GIG+F+ + V D T EY+ +EYA P Q
Sbjct: 512 HRVDPLALKTGDYVVHETHGIGRFLKMTERVIQSGDETSRREYIVLEYAASKRGQPADQL 571
Query: 204 -----ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRL 258
+ ML +Y ++P TLSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 572 YVPMDSLDMLSKYV---GGEKP-TLSKMGGSD-WKNTKKKARAAVREIAGELVELYAKR- 625
Query: 259 KQKRPPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFG 315
Q P + P +P E FPY T DQ A V+ D+ E+ +PMDR++ GDVG+G
Sbjct: 626 -QSAPGHAFAPDSPWQHEMEDNFPYVETEDQMLAIDAVKADM-EKPSPMDRVVVGDVGYG 683
Query: 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 375
KTEVA+RA F V G+Q +VL PT +LA+QH ER + +P + + LSRF S ++
Sbjct: 684 KTEVAVRAAFKAVQDGRQVVVLVPTTLLAQQHLSTFEERMAGFP-VTIKGLSRFTSPSDS 742
Query: 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVL 435
+E L + G ++I++GTH LL + V + NLGL++VDEEQRFGV+ KE I + + VDVL
Sbjct: 743 KEILKGLADGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVL 802
Query: 436 TLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQV 495
T+SATPIPRTL +++ G R+ S I TPP +R PI T++ A ++V +AI+ EL R GQV
Sbjct: 803 TMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQVAAAIRRELLRDGQV 862
Query: 496 FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555
FYV ++ +E+ L++ P I +AHGQ LE+T++ F +L+CT IVE
Sbjct: 863 FYVHNKVSDIEKKARELRELVPEARIVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVE 922
Query: 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA 615
+GLDI NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP + L++ + +RLA
Sbjct: 923 TGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTENSYDRLAT 982
Query: 616 LEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDE 671
+ + +LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D
Sbjct: 983 IAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADG 1042
Query: 672 HCVISVPY--KSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESL 728
+ K ++ID+ ++ +P +YIN +E+ + A A ++D+ ++ E +
Sbjct: 1043 KVADATEQGPKEIRIDLPVDAHIPEDYINSERLRLEVYRKLAASANDKDLALVV---EEM 1099
Query: 729 RRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMK----TNMNKKVFKMMIDS 784
+ ++G P+ ++ LL +R +A G++ I G + + T+ + K + S
Sbjct: 1100 KDRFGPVPHEVKRLLAVSRLRHLARATGLSDIGVQGTRIKLHPVELTDSKQVRLKRLAPS 1159
Query: 785 MTSEVHRNSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
T ++ EG ++ + L ++ +LL W+ +AE++
Sbjct: 1160 ATYRAAAKAIQLPFPKEGAKVTDKQLRDV---ELLQWVADFIAEMF 1202
>gi|452990575|emb|CCQ98194.1| transcription-repair coupling factor [Clostridium ultunense Esp]
Length = 1177
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 248/627 (39%), Positives = 380/627 (60%), Gaps = 26/627 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYRY 211
L+ GDYVVH GIG+F+G+ + + +Y+ I+YA G KL PV+Q ++ +Y
Sbjct: 501 LKVGDYVVHVNHGIGRFMGV--ETLTIDGIHKDYLHIKYA-GNDKLFVPVEQLD-LIQKY 556
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
L ++ P+ S W+R K K K +++ + DL++LY R K + P P
Sbjct: 557 -LASDEHEPKIYS--LGGNEWKRVKNKVKSSVKDIAEDLLKLYAKREAAKGYAFSPDTPY 613
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF A FPY+ T DQ KA +++RD+ E+ PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 614 QREFEAMFPYQETEDQLKAIQEIKRDM-EKPRPMDRLLCGDVGYGKTEVAIRAAFKAVLD 672
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ VL PT +LA+QH++ ERF+ + +K+G+LSRF++++E+ E + +++G L+I+
Sbjct: 673 GKQVAVLVPTTILAQQHYETFKERFADFA-VKIGVLSRFRTRSEQNEIIKELRNGTLDIV 731
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH LL V + +LGLL+VDEEQRFGV KE+I K +VDVLTL+ATPIPRTL+++L
Sbjct: 732 IGTHRLLSKDVTFKDLGLLIVDEEQRFGVTHKERIKQLKENVDVLTLTATPIPRTLHMSL 791
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD SLI TPP R P++T++ +S V AI+ EL R GQVF++ ++G+ + +
Sbjct: 792 IGVRDLSLIETPPENRFPVQTYVLEYSPSVVKEAIERELARDGQVFFLYNYVQGIYKMAE 851
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+ P +A+AHGQ +LE M F +L+ T+I+E+G+DI N NT+I+ D
Sbjct: 852 QISALVPDARVAVAHGQMPEHELETVMLDFLDRNYDVLVSTSIIETGVDIPNVNTLIIYD 911
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A
Sbjct: 912 ADHMGLSQLYQLRGRVGRSNRIAYAYFTYQKGKVLNEAAEKRLEAIKEFTELGSGFKIAM 971
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK-----VDEHCVISVPYKSVQID 685
+D+ IRG G + G +Q G + +VG DL+ +ML E++S+ V+EH +I
Sbjct: 972 RDLAIRGAGNLLGAEQHGFINSVGFDLYNQMLKEAISELKGEVVEEHF-------EPEIV 1024
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ ++ LP YI ++ + + W ++ + L ++G P +E LL
Sbjct: 1025 LPLDAYLPEAYIGNVNQKIAVYKRFSGVRTLKEWEDLR--DELIDRFGDPPAPVERLLLL 1082
Query: 746 LYVRRMAADIGITKIYASGKMVGMKTN 772
V+ A I +IY + ++ N
Sbjct: 1083 TKVKTYAYSFRIKRIYYENGQIKVEFN 1109
>gi|258612325|ref|ZP_05711832.1| transcription-repair coupling factor [Listeria monocytogenes F6900]
gi|258610889|gb|EEW23497.1| transcription-repair coupling factor [Listeria monocytogenes F6900]
Length = 709
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 264/699 (37%), Positives = 407/699 (58%), Gaps = 49/699 (7%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L+ GDYVVH GI ++VG++ D+ + V +Y+ + Y G KL PV Q
Sbjct: 24 RIQSYSELKVGDYVVHVNHGIARYVGMETLDI---NGVHKDYLLLVY-QGEDKLFIPVDQ 79
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L + + E K PR L+KL W+R K K + ++Q + DL++LY R +K
Sbjct: 80 LD--LVQKYVGAEGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 135
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ + + EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALR
Sbjct: 136 AFSADDEMQREFEEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALR 194
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +
Sbjct: 195 AAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGM 253
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G ++++VGTH LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPI
Sbjct: 254 KNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPI 313
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R+
Sbjct: 314 PRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRV 373
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + D + P +A AHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 374 ESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPN 433
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+ VQD + GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E EL
Sbjct: 434 VNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTEL 493
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ K E VP
Sbjct: 494 GSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP-- 551
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+IDI + +P YI +EM + + L + ++G+ P +E
Sbjct: 552 -VEIDIQADAYIPEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVE 608
Query: 741 ILLKKLYVRRMAADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTS 787
L ++ A ++G IT +++ G++ ++ ++ F M+
Sbjct: 609 YLFTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----- 663
Query: 788 EVHRNSLTFEGDQIKAELLLELPREQLLNWIFQC--LAE 824
+ EG Q+K + + + + L W++Q LAE
Sbjct: 664 -----GVGMEGTQLK--ITINVQNKPLKEWLYQVKSLAE 695
>gi|387779641|ref|YP_005754439.1| putative transcription-repair coupling factor [Staphylococcus aureus
subsp. aureus LGA251]
gi|344176743|emb|CCC87205.1| putative transcription-repair coupling factor [Staphylococcus aureus
subsp. aureus LGA251]
Length = 1168
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|384546782|ref|YP_005736035.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ED133]
gi|298693833|gb|ADI97055.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ED133]
Length = 1168
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|294496926|ref|YP_003560626.1| transcription-repair coupling factor [Bacillus megaterium QM B1551]
gi|294346863|gb|ADE67192.1| transcription-repair coupling factor [Bacillus megaterium QM B1551]
Length = 1176
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 244/658 (37%), Positives = 402/658 (61%), Gaps = 28/658 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L GDYVVH GIG+++G++ ++ + +Y+ I+Y +G KL PV+Q
Sbjct: 493 RIKSYSELNVGDYVVHVNHGIGRYLGMETLEINGNHK---DYIHIKY-EGSDKLYVPVEQ 548
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
++ + + +E K P+ + KL W++ K K + ++Q + DL++LY R K
Sbjct: 549 IDQV--QKYVGSEGKEPK-VYKLGGND-WKKVKRKVESSVQDIADDLIKLYAEREASKGY 604
Query: 264 PY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ P EF FPY+ T DQ ++ ++++D+ E E PMDRL+CGDVG+GKTEVA+R
Sbjct: 605 AFSPDGDLQREFETAFPYQETEDQLRSVQEIKKDM-EHERPMDRLLCGDVGYGKTEVAIR 663
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F V+ GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF+S+ +++E + +
Sbjct: 664 AAFKAVTDGKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRSRKQQQETIKGL 722
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G +++++GTH LL V+Y +LGLLV+DEEQRFGV KEKI K +VDVLTL+ATPI
Sbjct: 723 KNGTVDVVIGTHRLLSKDVIYKDLGLLVIDEEQRFGVTHKEKIKQMKANVDVLTLTATPI 782
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL R GQV+++ R+
Sbjct: 783 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPVLVREAIERELARDGQVYFLYNRV 842
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ +E + + P + AHG+ +LE + F +G +++ T I+E+G+DI N
Sbjct: 843 EDIERKAEEISMLVPDARVTYAHGKMNETELEAVILSFLEGEYDVIVSTTIIETGVDIPN 902
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+IV + + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E EL
Sbjct: 903 VNTLIVNNADKMGLSQLYQLRGRVGRSNRVAYAYFTYHKDKVLTEVAEKRLQAIKEFTEL 962
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 682
G GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + SV + +V
Sbjct: 963 GSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGSDGESVKF-NV 1021
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
+++++++ +P +YI +EM + + + + + + ++G+ P +E L
Sbjct: 1022 EMNLDLDAYIPDQYITDGRLKIEMYKRFRGI--EGLEDIQELQDEMIDRFGEYPAEVEYL 1079
Query: 743 LKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 800
K + TK+YA+ +V +++ ++ + +S V L GDQ
Sbjct: 1080 FK----------VAETKVYATQNLVESILQSKQEISILLSEEASSTVDGQKLFMLGDQ 1127
>gi|256618332|ref|ZP_05475178.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
4200]
gi|256597859|gb|EEU17035.1| transcription-repair coupling factor [Enterococcus faecalis ATCC
4200]
Length = 1179
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/599 (40%), Positives = 375/599 (62%), Gaps = 14/599 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQAS 205
++ YS L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q +
Sbjct: 491 RLKSYSDLKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN 548
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + + +E+K P+ ++KL + W + K K I+ + DL+ LY R +K +
Sbjct: 549 --LIQKFVASESKTPK-INKLGGS-EWTKTKRKVASKIEDIADDLILLYATRESEKGYAF 604
Query: 266 PKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + A EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA
Sbjct: 605 PPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDM-EKSRPMDRLLVGDVGFGKTEVALRAA 663
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F VS KQ L PT +LA+QH++ + ERF +P +++GLLSRF++K ++ E ++ IKH
Sbjct: 664 FKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFP-VEIGLLSRFRTKKQQNETIEKIKH 722
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH LL + +++LGLL++DEEQRFGVK KE++ VDVLTL+ATPIPR
Sbjct: 723 GQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLLSQVDVLTLTATPIPR 782
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL++++ G RD S+I TPP R PI+T++ + + AI+ E+ R GQVFY+ R+
Sbjct: 783 TLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRVDT 842
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E ++ LQ P IA AHGQ QLE T+ F +G IL+ T I+E+G+DI NAN
Sbjct: 843 IERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPNAN 902
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+ V++ GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG
Sbjct: 903 TLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGS 962
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ IRG G + G QQ G + +VG D++ +ML E++++ + I SV+I
Sbjct: 963 GFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVAR-KQGKNIQDQKTSVEI 1021
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ I+ +P YI +E+ + D++ + L ++G+ P + LL
Sbjct: 1022 DLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYE--ELEADLLDRFGEYPDEVAHLL 1078
>gi|386728259|ref|YP_006194642.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 71193]
gi|418310667|ref|ZP_12922202.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21331]
gi|418980448|ref|ZP_13528229.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus DR10]
gi|365236188|gb|EHM77088.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21331]
gi|379991773|gb|EIA13237.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus DR10]
gi|384229552|gb|AFH68799.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 71193]
Length = 1168
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|429760982|ref|ZP_19293425.1| transcription-repair coupling factor [Veillonella atypica KON]
gi|429175881|gb|EKY17296.1| transcription-repair coupling factor [Veillonella atypica KON]
Length = 1096
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 260/613 (42%), Positives = 377/613 (61%), Gaps = 20/613 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNL 213
L GDYVVH GIGK+VG+K + + +Y+ I YA G +L + ++ + +
Sbjct: 425 LSVGDYVVHSMHGIGKYVGLK--TIETEGIHRDYIEIAYA-GTDRLYLPASNLDQLQKYI 481
Query: 214 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIA 272
NE PR + K+ + W + TK + +I + L+ELY R + + P P
Sbjct: 482 GNEGDVPR-IHKMGGSD-WRKAVTKAQKSIDDLADKLVELYAKREITEGFAFLPDQPWQQ 539
Query: 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 332
EF FPYE T DQ +A +++ + ER TPMDRL+ GDVGFGKTEVA+RAIF V +GK
Sbjct: 540 EFEDAFPYEETEDQLQATREIKESM-ERPTPMDRLLAGDVGFGKTEVAMRAIFKAVVSGK 598
Query: 333 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392
Q VL PT VLA+QH+ RF+ + +KV +L+RF+S AEK+E L +++G ++I++G
Sbjct: 599 QVAVLVPTTVLAQQHYQTFLNRFNPF-GVKVDVLNRFRSTAEKKEVLKGVENGSIDILIG 657
Query: 393 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTG 452
THSLL +V + +LG LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++L G
Sbjct: 658 THSLLNKKVKFKDLGFLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVG 717
Query: 453 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 512
R+ S+ISTPP +RLP++T++ + + AIK EL RGGQV++V R+ + + L
Sbjct: 718 VREMSVISTPPEDRLPVQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGELL 777
Query: 513 QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 572
+QA P + AIAHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+ D
Sbjct: 778 EQALPDLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDAD 837
Query: 573 QFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+LA +
Sbjct: 838 RLGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-MLSEAAEKRLKAIEEFTELGAGFKLAMR 896
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G++ +VG ++ ML E+++K V+ ID+ I+
Sbjct: 897 DLEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQNKEVVKEVVPDPAIDLEIDAF 956
Query: 692 LPSEYINHLENPME----MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
+ YI + M+ KA D+ T+ L ++G ++ LL+
Sbjct: 957 IDDAYIKDSARKISVYQRMLQIKNKAQLDDL------TDELIDRFGTPTDPVDRLLRVAQ 1010
Query: 748 VRRMAADIGITKI 760
++ A +GI I
Sbjct: 1011 IKEQARLLGIKSI 1023
>gi|418644621|ref|ZP_13206762.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-55]
gi|375025140|gb|EHS18548.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-55]
Length = 1168
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|448745283|ref|ZP_21727143.1| transcription-repair coupling factor [Staphylococcus aureus KT/Y21]
gi|445561405|gb|ELY17609.1| transcription-repair coupling factor [Staphylococcus aureus KT/Y21]
Length = 1168
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|417896626|ref|ZP_12540571.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21235]
gi|341840466|gb|EGS81970.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21235]
Length = 708
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 28 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 84
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 85 DQ-VQKY-VASEDKTPK-LNKLG-GSEWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 140
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 141 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 199
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 200 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 258
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 259 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 318
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 319 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 378
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 379 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 438
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 439 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 498
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 499 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 558
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 559 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 616
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 617 DIVEIKVHALHSGITLIKDKGKIIDI 642
>gi|258407227|ref|ZP_05680372.1| transcription-repair coupling factor [Staphylococcus aureus A9763]
gi|257841185|gb|EEV65634.1| transcription-repair coupling factor [Staphylococcus aureus A9763]
Length = 1168
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQVLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTENAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|87160796|ref|YP_493190.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88194263|ref|YP_499055.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|161508743|ref|YP_001574402.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253735238|ref|ZP_04869403.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus TCH130]
gi|258452816|ref|ZP_05700811.1| transcription-repair coupling factor [Staphylococcus aureus A5948]
gi|262049988|ref|ZP_06022847.1| transcription-repair coupling factor [Staphylococcus aureus D30]
gi|282925578|ref|ZP_06333231.1| transcription-repair coupling factor [Staphylococcus aureus A9765]
gi|284023512|ref|ZP_06377910.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 132]
gi|294850363|ref|ZP_06791096.1| transcription-repair coupling factor [Staphylococcus aureus A9754]
gi|379013784|ref|YP_005290020.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus VC40]
gi|385780768|ref|YP_005756939.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 11819-97]
gi|415689615|ref|ZP_11452874.1| transcription-repair coupling factor helicase [Staphylococcus aureus
subsp. aureus CGS01]
gi|417648727|ref|ZP_12298546.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21189]
gi|417899059|ref|ZP_12542970.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21259]
gi|418284537|ref|ZP_12897255.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21209]
gi|418316058|ref|ZP_12927504.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21340]
gi|418318408|ref|ZP_12929811.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21232]
gi|418573289|ref|ZP_13137488.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21333]
gi|418580102|ref|ZP_13144191.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1114]
gi|418599415|ref|ZP_13162900.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21343]
gi|418642091|ref|ZP_13204291.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-24]
gi|418648486|ref|ZP_13210529.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-88]
gi|418651212|ref|ZP_13213221.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-91]
gi|418902762|ref|ZP_13456804.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1770]
gi|418907112|ref|ZP_13461132.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|418911170|ref|ZP_13465154.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG547]
gi|418924727|ref|ZP_13478631.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG2018]
gi|418927816|ref|ZP_13481703.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1612]
gi|419774449|ref|ZP_14300416.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CO-23]
gi|421150865|ref|ZP_15610517.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|422742502|ref|ZP_16796506.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MRSA177]
gi|422747255|ref|ZP_16801173.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MRSA131]
gi|440736500|ref|ZP_20916099.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|443638618|ref|ZP_21122656.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21196]
gi|123098062|sp|Q2G0R8.1|MFD_STAA8 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|123722412|sp|Q2FJD8.1|MFD_STAA3 RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|87126770|gb|ABD21284.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87201821|gb|ABD29631.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|160367552|gb|ABX28523.1| transcription-repair coupling factor helicase [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|253726798|gb|EES95527.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus TCH130]
gi|257859502|gb|EEV82355.1| transcription-repair coupling factor [Staphylococcus aureus A5948]
gi|259161923|gb|EEW46506.1| transcription-repair coupling factor [Staphylococcus aureus D30]
gi|282592482|gb|EFB97494.1| transcription-repair coupling factor [Staphylococcus aureus A9765]
gi|294822787|gb|EFG39223.1| transcription-repair coupling factor [Staphylococcus aureus A9754]
gi|315196186|gb|EFU26542.1| transcription-repair coupling factor helicase [Staphylococcus aureus
subsp. aureus CGS01]
gi|320139410|gb|EFW31288.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320144187|gb|EFW35955.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus MRSA177]
gi|329729764|gb|EGG66161.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21189]
gi|341846797|gb|EGS87987.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21259]
gi|364521757|gb|AEW64507.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 11819-97]
gi|365173197|gb|EHM63781.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21209]
gi|365242028|gb|EHM82756.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21340]
gi|365243025|gb|EHM83717.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21232]
gi|371982612|gb|EHO99762.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21333]
gi|374362481|gb|AEZ36586.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus VC40]
gi|374396944|gb|EHQ68163.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21343]
gi|375017622|gb|EHS11230.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-24]
gi|375026111|gb|EHS19499.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-88]
gi|375026222|gb|EHS19606.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-91]
gi|377693072|gb|EHT17448.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1114]
gi|377725361|gb|EHT49475.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG547]
gi|377739144|gb|EHT63151.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1612]
gi|377743399|gb|EHT67381.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1770]
gi|377747029|gb|EHT70997.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG2018]
gi|377761344|gb|EHT85218.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|383971725|gb|EID87790.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CO-23]
gi|394329085|gb|EJE55208.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|436429600|gb|ELP26966.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|443408939|gb|ELS67447.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21196]
Length = 1168
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|386830146|ref|YP_006236800.1| putative transcription-repair coupling factor [Staphylococcus aureus
subsp. aureus HO 5096 0412]
gi|417798431|ref|ZP_12445598.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21310]
gi|418657223|ref|ZP_13218999.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-105]
gi|334275950|gb|EGL94223.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21310]
gi|375031226|gb|EHS24513.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-105]
gi|385195538|emb|CCG15147.1| putative transcription-repair coupling factor [Staphylococcus aureus
subsp. aureus HO 5096 0412]
Length = 1168
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|57650044|ref|YP_185435.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus COL]
gi|151220678|ref|YP_001331500.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus str. Newman]
gi|418571163|ref|ZP_13135406.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21283]
gi|440707769|ref|ZP_20888454.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21282]
gi|81859647|sp|Q5HIH2.1|MFD_STAAC RecName: Full=Transcription-repair-coupling factor; Short=TRCF;
AltName: Full=ATP-dependent helicase mfd
gi|57284230|gb|AAW36324.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus COL]
gi|150373478|dbj|BAF66738.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus str. Newman]
gi|371981182|gb|EHO98367.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21283]
gi|436505623|gb|ELP41511.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21282]
Length = 1168
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|303230285|ref|ZP_07317052.1| transcription-repair coupling factor [Veillonella atypica
ACS-134-V-Col7a]
gi|302515068|gb|EFL57043.1| transcription-repair coupling factor [Veillonella atypica
ACS-134-V-Col7a]
Length = 1096
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 260/613 (42%), Positives = 377/613 (61%), Gaps = 20/613 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNL 213
L GDYVVH GIGK+VG+K + + +Y+ I YA G +L + ++ + +
Sbjct: 425 LSVGDYVVHSMHGIGKYVGLK--TIETEGIHRDYIEIAYA-GTDRLYLPASNLDQLQKYI 481
Query: 214 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIA 272
NE PR + K+ + W + TK + +I + L+ELY R + + P P
Sbjct: 482 GNEGDVPR-IHKMGGSD-WRKAVTKAQKSIDDLADKLVELYAKREITEGFAFLPDQPWQQ 539
Query: 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 332
EF FPYE T DQ +A +++ + ER TPMDRL+ GDVGFGKTEVA+RAIF V +GK
Sbjct: 540 EFEDDFPYEETEDQLQATREIKESM-ERPTPMDRLLAGDVGFGKTEVAMRAIFKAVVSGK 598
Query: 333 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392
Q VL PT VLA+QH+ RF+ + +KV +L+RF+S AEK+E L +++G ++I++G
Sbjct: 599 QVAVLVPTTVLAQQHYQTFLNRFNPF-GVKVDVLNRFRSTAEKKEVLKGVENGSIDILIG 657
Query: 393 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTG 452
THSLL +V + +LG LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++L G
Sbjct: 658 THSLLNKKVKFKDLGFLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVG 717
Query: 453 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 512
R+ S+ISTPP +RLP++T++ + + AIK EL RGGQV++V R+ + + L
Sbjct: 718 VREMSVISTPPEDRLPVQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGELL 777
Query: 513 QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 572
+QA P + A+AHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+ D
Sbjct: 778 EQALPDLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDAD 837
Query: 573 QFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+LA +
Sbjct: 838 RLGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-MLSEAAEKRLKAIEEFTELGAGFKLAMR 896
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G++ +VG ++ ML E+++K VI ID+ I+
Sbjct: 897 DLEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQNKEVIKEVVPDPAIDLEIDAF 956
Query: 692 LPSEYINHLENPME----MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
+ YI + M+ KA D+ T+ L ++G ++ LL+
Sbjct: 957 IDDAYIKDSARKISVYQRMLQIKNKAQLDDL------TDELIDRFGTPTDPVDRLLRVAQ 1010
Query: 748 VRRMAADIGITKI 760
++ A +GI I
Sbjct: 1011 IKEQARLLGIKSI 1023
>gi|387601857|ref|YP_005733378.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ST398]
gi|404477886|ref|YP_006709316.1| transcription-repair coupling factor [Staphylococcus aureus
08BA02176]
gi|283469795|emb|CAQ49006.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ST398]
gi|404439375|gb|AFR72568.1| putative transcription-repair coupling factor [Staphylococcus aureus
08BA02176]
Length = 1168
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|16799323|ref|NP_469591.1| transcription-repair coupling factor [Listeria innocua Clip11262]
gi|16412675|emb|CAC95479.1| transcription-repair coupling factor [Listeria innocua Clip11262]
Length = 1179
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 265/699 (37%), Positives = 407/699 (58%), Gaps = 49/699 (7%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L+ GDYVVH GI ++VG++ D+ + V +Y+ + Y G KL PV Q
Sbjct: 494 RIQSYSELKVGDYVVHVNHGIARYVGMETLDI---NGVHKDYLLLVY-QGEDKLFIPVDQ 549
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L + + E K PR L+KL W+R K K + ++Q + DL++LY R +K
Sbjct: 550 LD--LVQKYVGAEGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ + + EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALR
Sbjct: 606 AFSADDEMQREFEEAFPYQETDDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALR 664
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ L PT +LA+QH++ + ERF +P I++GLLSRF++K ++ E L +
Sbjct: 665 AAFKAIMDGKQVAFLVPTTILAQQHYETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGM 723
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G ++I+VGTH LL V Y +LGLLVVDEEQRFGV KEKI + +DVLTL+ATPI
Sbjct: 724 KNGTVDIVVGTHRLLSKDVEYQDLGLLVVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPI 783
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R+
Sbjct: 784 PRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRV 843
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + D + P +A AHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 844 ESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPN 903
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+ VQD + GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E EL
Sbjct: 904 VNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTEL 963
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ K E VP
Sbjct: 964 GSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP-- 1021
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+IDI + +P YI +EM + + L + ++G+ P +E
Sbjct: 1022 -VEIDIQADAYIPEYYITDGRQKIEMYKRFRNI--ESLLDLEDLQSDMIDRFGEYPEEVE 1078
Query: 741 ILLKKLYVRRMAADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTS 787
L ++ A ++G IT +++ G++ ++ ++ F M+
Sbjct: 1079 YLFTMTELKVHALEVGIESVEQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----- 1133
Query: 788 EVHRNSLTFEGDQIKAELLLELPREQLLNWIFQC--LAE 824
+ EG Q+K + + + + L W++Q LAE
Sbjct: 1134 -----GVGMEGTQLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|418950486|ref|ZP_13502659.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-160]
gi|375376908|gb|EHS80411.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-160]
Length = 1168
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|416842436|ref|ZP_11905017.1| transcription-repair coupling factor [Staphylococcus aureus O11]
gi|416847784|ref|ZP_11907368.1| transcription-repair coupling factor [Staphylococcus aureus O46]
gi|323438735|gb|EGA96475.1| transcription-repair coupling factor [Staphylococcus aureus O11]
gi|323442053|gb|EGA99688.1| transcription-repair coupling factor [Staphylococcus aureus O46]
Length = 1168
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|296123961|ref|YP_003631739.1| transcription-repair coupling factor [Planctomyces limnophilus DSM
3776]
gi|296016301|gb|ADG69540.1| transcription-repair coupling factor [Planctomyces limnophilus DSM
3776]
Length = 1103
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/628 (38%), Positives = 377/628 (60%), Gaps = 12/628 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNL 213
L GD VVH GIG+F+G++ + D + E++ +E+ DG AKL V A L + +
Sbjct: 429 LNEGDLVVHLSHGIGRFLGMQILAKGDQSE--EHMHLEFKDG-AKLFVPVALIHLVQKYV 485
Query: 214 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA-IA 272
+ P LSKL T AW ++K + A+ M D++ L R Q +P + +
Sbjct: 486 GGQKTAPE-LSKLGGT-AWAQKKKRVAEAVTDMAADMLRLQAERELQPGIAFPPDSHWME 543
Query: 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 332
EF A FPY T DQ KA LD++RD+ ER PM+RLICGDVGFGKTEVA+RA F V GK
Sbjct: 544 EFEASFPYIETIDQSKAILDIKRDM-ERPRPMERLICGDVGFGKTEVAMRAAFKAVDGGK 602
Query: 333 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392
Q VL PT VLA+QH+ S RF+++P I +G LSRF++K E++ L + G +++++G
Sbjct: 603 QVAVLVPTTVLAEQHYRSFSSRFAEFP-INIGQLSRFRTKTEQKLTLSGLMDGSVDLVIG 661
Query: 393 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTG 452
TH L+ S V + +LGLL++DEEQRFGV+ KE++ + D+LTLSATPIPRTL+L+L G
Sbjct: 662 THRLVQSDVHFKDLGLLIIDEEQRFGVEAKERLKKLRTQTDILTLSATPIPRTLHLSLIG 721
Query: 453 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 512
RD S + TPP +R+ I+T + F + AI EL+RGGQ+++V R+ ++ + +
Sbjct: 722 VRDISNLETPPQDRMAIETRICRFDPTLIRQAIVRELNRGGQIYFVHNRVYNIQTMAERI 781
Query: 513 QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 572
+ P + + HGQ ++EE M F +G + +L+ T I+ESGLDI NANTI + +
Sbjct: 782 RSIVPEAQVGVVHGQMNEHEMEEAMLGFVRGDLDVLVATTIIESGLDIPNANTIFINQAE 841
Query: 573 QFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKD 632
+GLA+++QLRGRVGR A+ YL + +LS QA +RL A+EE ELG GF+++ +D
Sbjct: 842 HYGLAEMHQLRGRVGRYKHRAYCYLMVEEGKILSPQATKRLKAIEEFSELGAGFKISMRD 901
Query: 633 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL 692
+ IRG G I G +Q+G + VG +L+ ++L ++ + + ++ V +D+ I+ +
Sbjct: 902 LEIRGAGNILGTEQSGHIAIVGYELYCQLLENAVRALKREPLKE--HRHVDVDLPISAFI 959
Query: 693 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 752
PSEY+ +EM + + + L Q+ ++ ++G P + ++ ++ +A
Sbjct: 960 PSEYVPPGRLKIEMYRKLSQVVSME--ELRQYETEIKDRFGPVPKPAQRMIDLREIQLLA 1017
Query: 753 ADIGITKIYASGKMVGMKTNMNKKVFKM 780
+ I +I+ G + +K+ K+
Sbjct: 1018 SRWSIDRIHLEGGYCVFSYRLPRKIEKL 1045
>gi|89100521|ref|ZP_01173382.1| transcription-repair coupling factor [Bacillus sp. NRRL B-14911]
gi|89084787|gb|EAR63927.1| transcription-repair coupling factor [Bacillus sp. NRRL B-14911]
Length = 1179
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 236/565 (41%), Positives = 364/565 (64%), Gaps = 18/565 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + + +Y+ I Y+ G +L PV Q
Sbjct: 494 RIKSYSELKIGDYVVHVNHGIGKYLGI--ETLEINGLHKDYLNIRYS-GSDQLYVPVDQI 550
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
++ +Y + +E K P+ + KL W+R K K + ++Q + DL++LY R K
Sbjct: 551 D-LVQKY-VGSEGKEPK-IYKLGGND-WKRVKKKVESSVQDIADDLIKLYAEREASKGYA 606
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P EF FPY+ T DQ ++ +++ D+ E+E PMDRL+CGDVG+GKTEVA+RA
Sbjct: 607 FSPDGDMQREFELSFPYQETEDQLRSIHEIKLDM-EKERPMDRLLCGDVGYGKTEVAIRA 665
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ +L PT +LA+QH+ + ERF +YP +++GLLSRF++K ++ E + +K
Sbjct: 666 AFKAIADGKQVAILVPTTILAQQHYQTMRERFQEYP-VEIGLLSRFRTKKQQTETVKGLK 724
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I+VGTH LL ++Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 725 NGTVDIVVGTHRLLSKEIIYKDLGLLIIDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIP 784
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ E+ RGGQV+++ R++
Sbjct: 785 RTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGGLVREAIEREMARGGQVYFLYNRVE 844
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E + + P + AHGQ +LE M F G +L+ T I+E+G+DI N
Sbjct: 845 DIERKAEEISMLVPDAKVVAAHGQMTENELESVMLSFLGGEADVLVSTTIIETGVDIPNV 904
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 905 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELG 964
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYK--S 681
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + E+ YK S
Sbjct: 965 SGFKIAMRDLSIRGAGNLLGSQQHGFIDSVGFDLYSQMLKEAIEERKEN---PETYKKPS 1021
Query: 682 VQIDININPRLPSEYINHLENPMEM 706
++ID+ I+ +P Y+ +EM
Sbjct: 1022 LEIDLEIDAYIPDAYLADGNQKIEM 1046
>gi|404372897|ref|ZP_10978178.1| transcription-repair coupling factor [Clostridium sp. 7_2_43FAA]
gi|226914272|gb|EEH99473.1| transcription-repair coupling factor [Clostridium sp. 7_2_43FAA]
Length = 1169
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 260/678 (38%), Positives = 410/678 (60%), Gaps = 31/678 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH G+G + GIK +V + +Y+ I Y G +PV Q ++ +Y
Sbjct: 503 LKLGDYVVHANHGVGVYKGIKQIEVGGHTR---DYLDIVYDKGDKLYVPVDQLD-LVQKY 558
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E K P+ ++KL + W + K K K +I ++ DL++LY R K + K+
Sbjct: 559 -IGSEGKTPK-VNKLG-SNEWNKAKAKVKKSINEIAEDLVKLYATRATLKGYKFRKDTEW 615
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FP+E TPDQ + +++ D+ E + PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 616 QKQFEDEFPFEETPDQLTSLEEIKHDM-ETDKPMDRLLCGDVGYGKTEVAIRAAFKAVMD 674
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH+ +++RFS +P +K+ ++SRF+S E++ L +K G+++I+
Sbjct: 675 GKQVAFLVPTTILAEQHYKNMTKRFSDFP-VKIDMISRFRSAKEQKATLQAVKEGNVDIL 733
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ +V+ +LGLL++DEEQRFGV QKEKI K +VDVLTLSATPIPRTL+++L
Sbjct: 734 IGTHRLVSKDIVFKDLGLLIIDEEQRFGVAQKEKIKGLKKNVDVLTLSATPIPRTLHMSL 793
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG RD S+I TPP ER PI+T++ + + V AI E++R GQV+YV R++ +E
Sbjct: 794 TGARDISVIETPPEERYPIQTYVVEQNDQLVRDAILREVNRSGQVYYVYNRVESIEGMAK 853
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
++++ P + I HGQ RQLE+ M F IL+CT I+E+G+DI N NT+I+ D
Sbjct: 854 YIRELVPECKVGIIHGQMTERQLEKEMVSFMNKDYDILVCTTIIETGIDIPNVNTMIIHD 913
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL AL++ ELG GF++A
Sbjct: 914 SDKMGLSQLYQLRGRVGRSNRIAYAYFMYTKDKILTEVAEKRLKALKDFTELGSGFKIAM 973
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G Q G + +G DL+ ML +++ K+ + + P ++ +DI ++
Sbjct: 974 RDLEIRGAGNMMGSAQHGHMAAIGYDLYCRMLEDTI-KIIKGEIEKEPIETT-VDIKVDA 1031
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQD-IWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+P YI E+ ++ + +K A D + M L +Y + P + L+ Y++
Sbjct: 1032 YIPGTYI---EDEIQKIEIYKKIAAIDGLEDYMDIKSELEDRYSEIPDPVYNLMDIAYIK 1088
Query: 750 RMAADIGITKIYASGKMV------GMKTNMNKKVFKMMIDSMTSEV-----HRNSLTFEG 798
A I I +I + K V G+K N+N ++K ++++ +V +
Sbjct: 1089 SKAKLISIEEIKETPKEVKFIFADGIK-NLN-SIYKYLLENYKDKVFLMFGEKPYFAVRS 1146
Query: 799 DQIKAELLLELPREQLLN 816
+IK E +L +E L N
Sbjct: 1147 SEIKKETILGFYKEILEN 1164
>gi|433653906|ref|YP_007297614.1| transcription-repair coupling factor Mfd [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292095|gb|AGB17917.1| transcription-repair coupling factor Mfd [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 1166
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/652 (39%), Positives = 395/652 (60%), Gaps = 25/652 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK---FD-VQKDSTVPIEYVFIEYA-DGMAKLPVKQASRML 208
L G YVVH GIGK+ GI+ FD V KD Y+ I+YA D +PV Q ++
Sbjct: 500 LTVGSYVVHVNYGIGKYEGIEEITFDGVTKD------YLKIKYAGDDKLFIPVDQLD-LI 552
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
+Y P + +P L+KL W + K K K A++ + DL++LY R K + K+
Sbjct: 553 QKYIGPED--KPPKLNKLG-GNEWSKLKKKAKKAVEDLAKDLIKLYAKRQTMKGYAFSKD 609
Query: 269 -PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
P +F +FPYE T DQ + +++RD+ E + PMDRL+CGDVG+GKTEVALRA F
Sbjct: 610 TPWQKDFEERFPYEETEDQLRCIEEIKRDM-ESDKPMDRLLCGDVGYGKTEVALRAAFKA 668
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V+ GKQ L PT +LA+QH++ +RF +P +K+ +LSRF+S E+ + + + G +
Sbjct: 669 VADGKQVAFLCPTTILAEQHYNNFVQRFKDFP-VKIEMLSRFRSYKEQSQIIKSLAEGTI 727
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I+VGTH +L + V + +LGLL++DEEQRFGVK KEKI K ++DVL+LSATPIPRTL+
Sbjct: 728 DILVGTHKILQNDVKFKDLGLLIIDEEQRFGVKHKEKIKKLKENIDVLSLSATPIPRTLH 787
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
++L G RD S+I PP +R P++T++ F++E + AI EL RGGQV++V RI G+E
Sbjct: 788 MSLIGIRDMSVIENPPEDRYPVQTYVVEFNEELIRDAILRELGRGGQVYFVYNRINGIER 847
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+++ P +A+AHGQ +LE M F G IL+CT I+E+GLDI N NTII
Sbjct: 848 MASIIKELVPSARVAVAHGQMDEGKLENIMIGFLNGDYDILVCTTIIETGLDIPNVNTII 907
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
V D + GL+QLYQLRGRVGR+++ A+AY Y ++++ A +RL A++E E G GF+
Sbjct: 908 VYDSDKMGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVITEVAEKRLEAIKEFTEFGSGFK 967
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDIN 687
+A +D+ IRG G + G +Q G + +G D++ +L E++ + P + IDI
Sbjct: 968 IAMRDLEIRGAGNLLGAEQHGHIDAIGYDMYLRLLDEAIKGLKGEVEDEKP--NTTIDIK 1025
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAA-EQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
++ + EYI +EM + E+D+ + L ++ + P ++E L+
Sbjct: 1026 VSAYIDKEYIEDENQRLEMYKKISSIENEKDVE---DIKDELIDRFKEYPKAVESLIDVA 1082
Query: 747 YVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG 798
Y++ +A D+ IT+I G + +K +K + ++DS+ +E R + F G
Sbjct: 1083 YLKALARDVNITEIAEKGASIILKFKDSKSINSGIVDSLVNE-FRGRIMFSG 1133
>gi|418561460|ref|ZP_13125950.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21262]
gi|371977538|gb|EHO94805.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21262]
Length = 1168
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|296131721|ref|YP_003638968.1| transcription-repair coupling factor [Thermincola potens JR]
gi|296030299|gb|ADG81067.1| transcription-repair coupling factor [Thermincola potens JR]
Length = 1178
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/672 (38%), Positives = 401/672 (59%), Gaps = 29/672 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYVVH GIG+++G+ K +V V +Y+ I+Y G KL V L +
Sbjct: 508 LSVGDYVVHVNHGIGRYLGLQKLEV---GGVTKDYLIIQYT-GEDKLYVPTDQISLVQKY 563
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
L E P+ LS+L W + K + K ++++M +L+ LY R K YP +
Sbjct: 564 LGAEGAAPK-LSRLGGQD-WNKVKKRVKESVREMAQELLNLYATREKVVGHAYPPDTVWQ 621
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPYE TPDQ +A +++ D+ ER PMDRL+CGDVG+GKTEVA+RA F V
Sbjct: 622 KEFEEAFPYEETPDQLRAIKEIKEDM-ERPKPMDRLLCGDVGYGKTEVAIRAAFKAVMDS 680
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
+Q VL PT +LA+QH++ ERFS YP IK+ +LSRF+S E++E L +K G ++I++
Sbjct: 681 RQVAVLVPTTILAQQHYNTFVERFSGYP-IKIEMLSRFRSPKEQQEILKNLKTGGVDIVI 739
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH L+ + V + LGL++VDEEQRFGV KE++ + +VDVLTL+ATPIPRTL+++L
Sbjct: 740 GTHRLVQNDVQFKKLGLVIVDEEQRFGVAHKERLKQLRKNVDVLTLTATPIPRTLHMSLV 799
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ TPP +R P++T++ F+ + + A++ E+DRGGQV++V RI +++
Sbjct: 800 GVRDMSILETPPEDRWPVQTYVLEFNWDVIGDAVRKEMDRGGQVYFVHNRIMDIDQIAAQ 859
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L+ A P +A+AHGQ QLE+ M +F +G +L+CT I+E+GLDI N NT+IV +
Sbjct: 860 LRAAVPEARVAVAHGQMKEDQLEQVMLEFLEGEYDVLLCTTIIETGLDIPNVNTLIVDEA 919
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+ + A+AY Y +L++ A +RL A+ E E G GF++A +
Sbjct: 920 DRMGLSQLYQLRGRVGRSHRLAYAYFTYRRDKVLTEVAEKRLQAIREFTEFGSGFKIAMR 979
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G G +Q G + VG D++ +L E++ ++ + + + ID+NI+
Sbjct: 980 DLEIRGAGNFLGPEQHGHMMAVGFDMYCRLLEEAVKELKGDLIEEI--QEPTIDLNIDAH 1037
Query: 692 LPSEYINHLENPMEM------VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ ++YI +E+ + AE A + E L +YG P S+ LL
Sbjct: 1038 IGNDYIPDAGMKIEIYQKIMRIQSAEDARD--------VGEELEDRYGPVPQSVTNLLAI 1089
Query: 746 LYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ-IKAE 804
++ + + + + MV +K + + V + + ++ +R+ L F G Q ++
Sbjct: 1090 ARIKALCTRLKVQAVTQIKDMVHIKFHPSNTVQGEQLAGL-AQRYRHRLVFTGTQALQIN 1148
Query: 805 LLLE-LPREQLL 815
L ++ L REQ L
Sbjct: 1149 LKVKGLSREQAL 1160
>gi|423100943|ref|ZP_17088647.1| transcription-repair coupling factor [Listeria innocua ATCC 33091]
gi|370792479|gb|EHN60346.1| transcription-repair coupling factor [Listeria innocua ATCC 33091]
Length = 1179
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 265/699 (37%), Positives = 407/699 (58%), Gaps = 49/699 (7%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L+ GDYVVH GI ++VG++ D+ + V +Y+ + Y G KL PV Q
Sbjct: 494 RIQSYSELKVGDYVVHVNHGIARYVGMETLDI---NGVHKDYLLLVY-QGEDKLFIPVDQ 549
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L + + E K PR L+KL W+R K K + ++Q + DL++LY R +K
Sbjct: 550 LD--LVQKYVGAEGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ + + EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALR
Sbjct: 606 AFSADDEMQREFEEAFPYQETDDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALR 664
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ L PT +LA+QH++ + ERF +P I++GLLSRF++K ++ E L +
Sbjct: 665 AAFKAIMDGKQVAFLVPTTILAQQHYETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGM 723
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G ++I+VGTH LL V Y +LGLLVVDEEQRFGV KEKI + +DVLTL+ATPI
Sbjct: 724 KNGTVDIVVGTHRLLSKDVEYQDLGLLVVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPI 783
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R+
Sbjct: 784 PRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRV 843
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + D + P +A AHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 844 ESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPN 903
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+ VQD + GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E EL
Sbjct: 904 VNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTEL 963
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ K E VP
Sbjct: 964 GSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP-- 1021
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+IDI + +P YI +EM + + L + ++G+ P +E
Sbjct: 1022 -VEIDIQADAYIPEYYITDGRQKIEMYKRFRNI--ESLLDLEDLQSDMIDRFGEYPEEVE 1078
Query: 741 ILLKKLYVRRMAADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTS 787
L ++ A ++G IT +++ G++ ++ ++ F M+
Sbjct: 1079 YLFTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----- 1133
Query: 788 EVHRNSLTFEGDQIKAELLLELPREQLLNWIFQC--LAE 824
+ EG Q+K + + + + L W++Q LAE
Sbjct: 1134 -----GVGMEGTQLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|399026147|ref|ZP_10728111.1| transcription-repair coupling factor Mfd [Chryseobacterium sp. CF314]
gi|398076612|gb|EJL67670.1| transcription-repair coupling factor Mfd [Chryseobacterium sp. CF314]
Length = 1121
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 243/627 (38%), Positives = 375/627 (59%), Gaps = 27/627 (4%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVF-IEYADGMAKLPVKQASRML 208
D SL+ GDY+ H GIGKF+G+ V+ ++ I+ F + Y +G + +
Sbjct: 430 DLMSLKIGDYIAHIDHGIGKFMGL---VKVNNDGKIQECFKLTYKNGDLLYVSIHSLHKI 486
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PK 267
+YN P+ + LSKL + AW+ K K K ++++ DL++LY R + Y P
Sbjct: 487 SKYNGPD--GKEIVLSKLG-SPAWKSLKQKTKAKVKQIAFDLIKLYAQRKTAQGFAYTPD 543
Query: 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
+ E A F YE TPDQ+KA +DV++D+ E T MDRL+CGDVGFGKTEVA+RA F
Sbjct: 544 SYLQNELEASFIYEDTPDQEKATIDVKKDM-EASTVMDRLVCGDVGFGKTEVAIRAAFKA 602
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
+ GKQ +L PT +LA QH+ ER +P + V ++RF++ +K E L +K G +
Sbjct: 603 ATDGKQVAILVPTTILAFQHYRSFKERLKDFP-VNVAYVNRFRTAKQKSETLAALKDGKV 661
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+II+GTH L+ S V + +LGLL++DEE +FGV K+K+ + K +VD LTL+ATPIPRTL
Sbjct: 662 DIIIGTHQLVSSSVKFKDLGLLIIDEEHKFGVSVKDKLKTLKNNVDTLTLTATPIPRTLQ 721
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+L RD S+I TPPP R P+ T L F++E + A+ YEL R GQ++++ RI+ L++
Sbjct: 722 FSLMAARDLSVIKTPPPNRQPVDTQLIGFNEETIRDAVSYELQRDGQIYFINNRIENLKD 781
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+Q+ P + HGQ +QLE+ + F +G +L+ T IVESG+D+ NANTI
Sbjct: 782 IAGLIQRLVPDARVITGHGQMEGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANTIF 841
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ D Q+FG+A L+Q+RGRVGR++++A YL P +++ A +RL A+E+ +LG GFQ
Sbjct: 842 INDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTADARKRLEAIEQFSDLGSGFQ 901
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV-------------DEHCV 674
+A KD+ IRG G + G +Q+G + +G + + +++ E+L ++ ++
Sbjct: 902 IAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDEDFENLFDNEEDRQK 961
Query: 675 ISVPYKSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYG 733
+ K V ID ++ LP YI++ E + + + AE E+D L +F L ++G
Sbjct: 962 LFKSVKEVNIDTDLELMLPDFYISNTEERLLLYQKIAEIDNEKD---LQKFESELIDRFG 1018
Query: 734 KEPYSMEILLKKLYVRRMAADIGITKI 760
P LLK + ++ +AADIG KI
Sbjct: 1019 ALPKEAVNLLKSVSLKWLAADIGFEKI 1045
>gi|325286644|ref|YP_004262434.1| transcription-repair coupling factor [Cellulophaga lytica DSM 7489]
gi|324322098|gb|ADY29563.1| transcription-repair coupling factor [Cellulophaga lytica DSM 7489]
Length = 1113
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 243/628 (38%), Positives = 371/628 (59%), Gaps = 23/628 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYV H G+GKF G+ K DV+ I+ ++ E + + + ++
Sbjct: 430 LDIGDYVTHIDHGVGKFGGLQKIDVEGKKQEAIKLMYSER--DVLYVSIHSLHKI---SK 484
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +P + KL + AW++ K K K ++++ DL+++Y +R +K Y P +
Sbjct: 485 FAGKDGKPPKIFKLG-SGAWKKLKQKTKTRVKQIAFDLIKVYANRRLKKGFKYAPDSYLQ 543
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E A F YE TPDQ KA D+++D+ E + PMDRLICGDVGFGKTEVA+RA F V G
Sbjct: 544 HELEASFIYEDTPDQSKATEDLKKDM-ESDRPMDRLICGDVGFGKTEVAIRAAFKAVDNG 602
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT +LA QH +ER P + V ++RF++ EK E L+ + G ++II+
Sbjct: 603 KQVAVLVPTTILAFQHHKTFAERLKDMP-VTVDYVNRFRTAKEKRETLERLAEGKVDIII 661
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH L+ VV+ +LGLL+VDEEQ+FGV K+K+ S K +VDVLTL+ATPIPRTL +L
Sbjct: 662 GTHQLVNKNVVFKDLGLLIVDEEQKFGVAVKDKLKSIKENVDVLTLTATPIPRTLQFSLM 721
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD S I+T PP R PI +H+ F+++ + A+ YE+ RGGQVF++ RI+ ++E
Sbjct: 722 AARDLSTINTAPPNRYPIDSHVVRFTEDTIRDAVSYEIQRGGQVFFIHNRIENIKEVAGM 781
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQ+ P I I HGQ ++LE M F G +L+ T I+ESGLD+ NANTI + +
Sbjct: 782 LQRLVPDAKIGIGHGQMDGKKLETLMLAFMNGEFDVLVSTTIIESGLDVPNANTIFINNA 841
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+ L+Q+RGRVGR++K+A Y P +S+ A +R+ ALE+ ELG GF +A K
Sbjct: 842 NNFGLSDLHQMRGRVGRSNKKAFCYFITPPYDSMSNDARKRIQALEQFTELGSGFNIAMK 901
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS----------VPYKS 681
D+ IRG G I G +Q+G + +G D + ++L E++ ++ E+ V K
Sbjct: 902 DLEIRGAGDILGGEQSGFINEIGFDAYQKILAETVEELKENEFKDLYEEVEGKDKVFVKE 961
Query: 682 VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
QID + P +Y+N++ + + + + ++ L ++ + L ++G+ P +E
Sbjct: 962 TQIDSDFELLFPDDYVNNVTERLNLYTQLNQITTEE--GLAKYEKELVDRFGEIPSPVED 1019
Query: 742 LLKKLYVRRMAADIGITKI-YASGKMVG 768
LL + ++ +A +G+ KI GKM+G
Sbjct: 1020 LLNSVRIKWIANSLGLEKIVLKKGKMIG 1047
>gi|384916040|ref|ZP_10016240.1| Transcription-repair coupling factor mfd (Superfamily II helicase)
[Methylacidiphilum fumariolicum SolV]
gi|384526568|emb|CCG92111.1| Transcription-repair coupling factor mfd (Superfamily II helicase)
[Methylacidiphilum fumariolicum SolV]
Length = 1055
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 261/625 (41%), Positives = 377/625 (60%), Gaps = 39/625 (6%)
Query: 155 RSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYRY 211
+ GDYVVH + GI +F GIK D + +E+ D AKL P+ QA ++ RY
Sbjct: 406 KDGDYVVHLQHGICRFRGIKSMDGTNSEMIELEF------DQKAKLFVPIDQAY-LISRY 458
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP-----PYP 266
+ K+P+ L L T R + K+A +K V DL E L ++ +R +P
Sbjct: 459 -IGGTKKQPK-LDSLGGT-----RWLRAKIATEKAVSDLAERML-KINAEREVLEGFSFP 510
Query: 267 KNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
K+ EF F YE T DQ KA + +RD+ E + PMDRLICGDVGFGKTEVA+RAIF
Sbjct: 511 KDDHWQREFEESFIYEETADQLKAIEETKRDM-ESKRPMDRLICGDVGFGKTEVAIRAIF 569
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
V GKQA +LAPT VLAKQHF +SERF+ YP I+ LL R +E++E L +K+G
Sbjct: 570 KAVMGGKQAALLAPTTVLAKQHFQTLSERFADYP-IQTALLCRLIKNSEEKEILAGLKNG 628
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
+++++GTH LL + V + +LGL+V+DEEQRFGV QKEK +DVL+LSATPIPRT
Sbjct: 629 SIDVVIGTHRLLSADVAFKDLGLIVIDEEQRFGVLQKEKWKDTFRLIDVLSLSATPIPRT 688
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
LYLAL G RD SLI TPPP R PI+T +SA+ + + AI+ EL+RGGQV+++ RI+ +
Sbjct: 689 LYLALAGARDMSLIETPPPNRYPIETIVSAYDERIIRQAIERELNRGGQVYFLHNRIRTI 748
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
E+ ++ P V IAI HG+ +LEE ME F G I +L+ T+I+E+GLDI NANT
Sbjct: 749 EKVASRIKSLLPSVKIAIGHGRMKKSELEEVMESFVNGQIDVLLATSIIENGLDIPNANT 808
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
II+ FGLA LYQLRGRVGR++++A+AYL P + A +R+ A++E +LG G
Sbjct: 809 IIIDRADLFGLADLYQLRGRVGRSNQKAYAYLLLPRDLFIQADAKKRIKAMQEHSQLGVG 868
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
FQ+A +D+ IRG G + G Q+G + +VG +L+ ++L +++ ++ + ++ V +D
Sbjct: 869 FQIALRDLEIRGAGNLLGTSQSGHIASVGFELYCKLLKKAVQRLQGKEIDTLTDCKVSLD 928
Query: 686 ININPR----------LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKE 735
+ P +P Y+ E ++ + +A I L + + + ++G
Sbjct: 929 F-LLPEPGGGRHALAFIPFTYMERREERLQAYRQLAEAL--SIGELEEIKKGWKDRFGAW 985
Query: 736 PYSMEILLKKLYVRRMAADIGITKI 760
P +E L +R + A GI +I
Sbjct: 986 PEPVENLFSITEIRLIGAAKGIERI 1010
>gi|218290671|ref|ZP_03494762.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius
LAA1]
gi|218239336|gb|EED06534.1| transcription-repair coupling factor [Alicyclobacillus acidocaldarius
LAA1]
Length = 1183
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 245/618 (39%), Positives = 378/618 (61%), Gaps = 24/618 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK---FDVQKDSTVPIEYVFIEYADGMA-KLPVKQASRMLY 209
L GDYVVH GIG+++GIK D +++ +Y+++ YA G + +PV Q + +
Sbjct: 503 LNVGDYVVHVNHGIGRYMGIKTLEVDGRRN-----DYLYLSYAGGDSLYVPVDQIDQ-IQ 556
Query: 210 RYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY---P 266
RY E K P+ S S + W++ K + K +++ + DL++LY R + P + P
Sbjct: 557 RYIGSGE-KEPKLHSLGS--SEWQKTKNRVKKSVRDIAGDLLKLYAKR--EATPGHAFSP 611
Query: 267 KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
P A+F FPYE TPDQ +A +++RD+ E+ PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 612 DTPWQADFENMFPYEETPDQLRAIAEIKRDM-EKPRPMDRLLCGDVGYGKTEVAMRAAFK 670
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
V GKQ VL PT VLA+QH++ ERF+ +P +K+ +LSRF+++ E +E L +K G
Sbjct: 671 AVMDGKQVAVLVPTTVLAQQHYETFKERFAGFP-VKIEMLSRFRTRKETQEVLKGLKEGT 729
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
++I++GTH LL + V + +LGLL+VDEEQRFGV KEK+ + +VD LTL+ATPIPRTL
Sbjct: 730 IDIVIGTHRLLQNSVQFKDLGLLIVDEEQRFGVTHKEKLKQLRANVDCLTLTATPIPRTL 789
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
++++ G RD S+I TPP R P++T++ +++ V AI+ EL RGGQV++V ++ +
Sbjct: 790 HMSMLGVRDLSIIETPPENRFPVQTYVVEYNEGLVKEAIERELARGGQVYFVYNDVQTIH 849
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
+ +Q P +++AHGQ +LE M F +G +L+ T I+E+GLDI N NT+
Sbjct: 850 RMAERVQSLVPDARVSVAHGQMAEAELERVMLDFLEGEYDVLVTTTIIETGLDIPNVNTL 909
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
IV D +FGL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RLAA++E ELG GF
Sbjct: 910 IVYDADKFGLSQLYQLRGRVGRSNRIAYAYFTYQPAKVLSEVAEKRLAAIKEFTELGSGF 969
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 686
++A +D+ IRG G + G +Q G + +VG D++ E+L +++ ++ + P + ID+
Sbjct: 970 KIAMRDLSIRGAGNLLGAEQHGFINSVGFDMYTELLQQAIRELRGEQ-LEKPVEPT-IDV 1027
Query: 687 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
+ +P YI+ + M A Q + + L +YG P + LL
Sbjct: 1028 PVEAFIPDTYISDPSQKVAMYKRFR--AIQAVSEADDLEDELIDRYGDPPQEVRNLLDVT 1085
Query: 747 YVRRMAADIGITKIYASG 764
++ +A I G
Sbjct: 1086 RLKSLAMQAHADHIATQG 1103
>gi|423618764|ref|ZP_17594597.1| transcription-repair coupling factor [Bacillus cereus VD115]
gi|401252606|gb|EJR58862.1| transcription-repair coupling factor [Bacillus cereus VD115]
Length = 1176
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 244/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETDDQLRSIEEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E L +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETLKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVS--TIEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|390953904|ref|YP_006417662.1| transcription-repair coupling factor Mfd [Aequorivita sublithincola
DSM 14238]
gi|390419890|gb|AFL80647.1| transcription-repair coupling factor Mfd [Aequorivita sublithincola
DSM 14238]
Length = 1122
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/632 (38%), Positives = 376/632 (59%), Gaps = 29/632 (4%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
+L GDYV H GIGKF G+ K +V+ I+ Y D + + ++
Sbjct: 439 NLEVGDYVTHIDHGIGKFGGLQKIEVEGKMQEAIKLF---YGDRDILYLSIHSLHKISKF 495
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
N + + P+ SD AW++ K K K ++++ +L+ELY R K + P +
Sbjct: 496 N-GKDGREPKIYKLGSD--AWKKLKQKTKTRVKEIAFNLIELYAKRRTLKGFAFDPDSYL 552
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
AE + F YE TPDQ A DV++D+ E E PMDRL+CGDVGFGKTEVA+RA F V
Sbjct: 553 QAELESSFIYEDTPDQSTATEDVKKDM-ENERPMDRLVCGDVGFGKTEVAIRAAFKAVDN 611
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ +L PT +LA QHF +ER S+ P +KV L+RF++ E++ L+ +K+G L+I+
Sbjct: 612 GKQVAILVPTTILAFQHFKTFTERLSEMP-VKVDYLNRFRTTKERKTVLEELKNGRLDIV 670
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ V + +LGLL++DEEQ+FGV K+K+ + K +VD LTL+ATPIPRTL +L
Sbjct: 671 IGTHQLVSKAVEFKDLGLLIIDEEQKFGVGVKDKLKTIKENVDTLTLTATPIPRTLQFSL 730
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S+I+TPPP R P++TH+ F +E + A++YE+ RGGQVF+V RI+ ++E
Sbjct: 731 MAARDLSVITTPPPNRYPVETHVVRFGEENIRDAVRYEISRGGQVFFVHNRIENIKEVAG 790
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P I I HGQ ++LE+ M +F +L+ T I+ESGLD+ NANTI + +
Sbjct: 791 LIQRLVPDAKIGIGHGQMEGKKLEDLMLRFMNNEFDVLVSTTIIESGLDVPNANTIFINN 850
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A Y P+ S ++D+A +R+ ALE+ ELG G +A
Sbjct: 851 ANNFGLSDLHQMRGRVGRSNKKAFCYFITPEYSAMTDEARKRITALEQFSELGSGINIAM 910
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP----------YK 680
KD+ IRG G + G +Q+G + +G + + ++L E++ ++ + ++ K
Sbjct: 911 KDLEIRGAGDLLGGEQSGFINEIGFETYQKILAEAIEELKDKEFKNLYDDTEGPKKNFVK 970
Query: 681 SVQIDININPRLPSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPY 737
+ ID + EY+N++ + + +NE + E L +F + L ++G+ P
Sbjct: 971 EMTIDTDFELLFSDEYVNNITERLNLYTKLNELKTEVE-----LQKFEKDLLDRFGELPE 1025
Query: 738 SMEILLKKLYVRRMAADIGITK-IYASGKMVG 768
+ LL + ++ +A +G+ + I KMVG
Sbjct: 1026 EAKDLLNSVRIKWIAISMGLERLIMKQKKMVG 1057
>gi|258509516|ref|YP_003172267.1| transcription-repair coupling factor [Lactobacillus rhamnosus GG]
gi|385829139|ref|YP_005866911.1| transcription-repair coupling factor [Lactobacillus rhamnosus GG]
gi|257149443|emb|CAR88416.1| Transcription-repair coupling factor [Lactobacillus rhamnosus GG]
gi|259650784|dbj|BAI42946.1| transcription-repair coupling factor [Lactobacillus rhamnosus GG]
Length = 1175
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 239/601 (39%), Positives = 377/601 (62%), Gaps = 14/601 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG++ G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 495 LKPGDYVVHVNHGIGQYTGME-TLEVDG-VHRDYITIVYRNNDKLFIPVDQLN-LVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ + K P ++KL T W++ K I+ + +L++LY R +K + P +
Sbjct: 551 VSADGKTP-NVNKLG-GTEWQKTKRIVAARIEDIADELIDLYAKREAEKGYAFGPDDDLQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F +FPY TPDQ ++ +++RD+ E+ PMDRL+ GDVGFGKTEVALRA F V G
Sbjct: 609 QKFEDEFPYPETPDQLRSAKEIKRDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT +LA+QHFD + +RF+ +P +K+GLLSRFQ+ + + + +K+G ++I+V
Sbjct: 668 KQVAILVPTTILAQQHFDTMKDRFADFP-VKIGLLSRFQTPHQNKMTIKGLKNGTIDIVV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K +VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRTLNMSML 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T + + + AI+ E++RGGQVFY+ R++ +E +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQ 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L++ P I AHGQ QLE + F GA +L+ T I+E+G+D+ NANT+I+++
Sbjct: 847 LEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ A +RL A+++ ELG GF++A +
Sbjct: 907 DHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + +V +ID+ +
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNK--RRGLKTVQKTDAEIDLGLEAY 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP++Y+ +E+ +A + + +E L ++G P + LL +++R
Sbjct: 1025 LPTDYVADSRQKIELYKRIREADSDE--AETEISEDLIDRFGDYPQPVTNLLAIAHLKRF 1082
Query: 752 A 752
A
Sbjct: 1083 A 1083
>gi|308066876|ref|YP_003868481.1| transcription-repair coupling factor [Paenibacillus polymyxa E681]
gi|305856155|gb|ADM67943.1| Transcription-repair coupling factor (TRCF) [Paenibacillus polymyxa
E681]
Length = 1175
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 231/559 (41%), Positives = 358/559 (64%), Gaps = 19/559 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQAS 205
++ YS L+ GDYVVH+ GIGK++GI + + +Y+ + YA G +P++Q
Sbjct: 482 RIKSYSELKVGDYVVHQNHGIGKYMGIG--TLEVGGIHKDYMHVLYAGGDKLSVPIEQID 539
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
++ +Y + +E K P+ + KL W R K+K + ++Q + DL++LY R Q P +
Sbjct: 540 -LIQKY-VGSEDKEPK-IYKLG-GNEWTRVKSKVRSSVQDIADDLIKLYAER--QSAPGF 593
Query: 266 P---KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+P EF FPY+ T DQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+R
Sbjct: 594 AFEKDSPEQQEFEDMFPYDETRDQIRAIEEIKKDM-EQSRPMDRLLCGDVGYGKTEVAIR 652
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F GKQ VL PT +LA+QH++ ERFS YP + +LSRF+++ E+ E + +
Sbjct: 653 AAFKSAIEGKQVAVLVPTTILAQQHYETFRERFSGYP-FNIQVLSRFRTRKEQNETIKGV 711
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
+ G ++I++GTH LL +V+ +LG+L+VDEEQRFGV KEK+ K +VDVLTL+ATPI
Sbjct: 712 RQGTVDIVIGTHRLLSQDLVFKDLGMLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPI 771
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T++ S+ V AI+ E+ RGGQV+Y+ R+
Sbjct: 772 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIEREMARGGQVYYLYNRV 831
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+G++E + PG + + HGQ +LE+T+ F G +L+ T+I+E+G+DI N
Sbjct: 832 QGIQEMAAEINALVPGAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPN 891
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E EL
Sbjct: 892 VNTLIVHDADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTEL 951
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCV----ISVP 678
G GF++A +D+ IRG G + G +Q G + +VG DL+ +ML E ++K + S
Sbjct: 952 GSGFKIAMRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINKRKVSVLGEEDQSNR 1011
Query: 679 YKSVQIDININPRLPSEYI 697
S ID+ ++ LP +YI
Sbjct: 1012 NWSTSIDLGVDAYLPGDYI 1030
>gi|302669664|ref|YP_003829624.1| transcription-repair coupling factor Mfd [Butyrivibrio
proteoclasticus B316]
gi|302394137|gb|ADL33042.1| transcription-repair coupling factor Mfd [Butyrivibrio
proteoclasticus B316]
Length = 1191
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 248/641 (38%), Positives = 385/641 (60%), Gaps = 21/641 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASR 206
K+ +S L+ GDYVVH+ G+G + GI+ ++ D V +Y+ IEY DG +
Sbjct: 500 KISSFSDLKIGDYVVHEDHGLGIYRGIE-KIETDHVVR-DYIKIEYGDGGNLYVLATGLG 557
Query: 207 MLYRY---NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
++ +Y +ET L+KL + W K+K K A++++ DL+ELY R + K
Sbjct: 558 VIQKYASGGDDSETTHKPKLNKLG-SVEWSHTKSKVKAAVEEVAQDLVELYAKRQEAKGH 616
Query: 264 PY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ P EF FPY+ T DQ A D +RD+ E MDRL+CGDVGFGKTE+A+R
Sbjct: 617 QFSPDTVWQQEFEDAFPYQETDDQLTAIEDTKRDM-ESGIIMDRLVCGDVGFGKTEIAIR 675
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F V GKQ VL PT +LA+QH++ SER +P ++V L+SRF++ AE+++ + +
Sbjct: 676 AAFKAVQDGKQVAVLVPTTILAQQHYNTFSERMRDFP-VRVDLMSRFRTAAEQKKTIVDL 734
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K G ++I++GTH LL V Y +LGLL+VDEEQRFGV KEK+ + K ++DVLTLSATPI
Sbjct: 735 KKGLVDIVIGTHRLLSKDVQYKDLGLLIVDEEQRFGVTHKEKLKTLKENIDVLTLSATPI 794
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL+++L G R+ S++ P +R+PI+T++ ++ E + AI EL R GQV+YV R+
Sbjct: 795 PRTLHMSLVGIREMSVLEEAPNDRMPIQTYVMEYNDELIREAIARELARNGQVYYVYNRV 854
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + +Q+ P ++A AHGQ +LE M F G I +L+ T I+E+GLDI N
Sbjct: 855 NTIADVAAQIQKLVPEANVAFAHGQMKESELERIMYDFIDGTIDVLVSTTIIETGLDIPN 914
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+I+ D + GL+QLYQLRGRVGR+++ A+A+L Y +L + A +RL+A+ E +L
Sbjct: 915 VNTMIIHDSDKMGLSQLYQLRGRVGRSNRTAYAFLMYKKDKMLKEVAEKRLSAIREFTDL 974
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL---SKVDEHCVISVPY 679
G GF++A +D+ IRG G++ G +Q+G + VG DL+ +ML E++ D ++
Sbjct: 975 GSGFKIAMRDLEIRGAGSLLGRKQSGHMQAVGYDLYCKMLGEAVRHKKSDDTDGDYTLDD 1034
Query: 680 KSVQIDININPRLPSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEP 736
+ ID++++ +P YI + E +E+ + E E D + L ++G+ P
Sbjct: 1035 INTSIDLDVSAFIPDNYILNEEQKLEIYKRIASLENQGECD-----DMKDELIDRFGEVP 1089
Query: 737 YSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKV 777
+ LL+ +R A + I +I + +K + N K+
Sbjct: 1090 ETAINLLRISLLRTRAHALYIPEIKGGNGKIEIKISPNAKI 1130
>gi|116871596|ref|YP_848377.1| transcription-repair coupling factor [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116740474|emb|CAK19594.1| transcription-repair coupling factor [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 1179
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 263/694 (37%), Positives = 404/694 (58%), Gaps = 47/694 (6%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L+ GDYVVH GI ++VG++ D+ + V +Y+ + Y G KL PV Q
Sbjct: 494 RIQSYSELKVGDYVVHVNHGIARYVGMETLDI---NGVHKDYLLLVY-QGEDKLFIPVDQ 549
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L + + E K PR L+KL W+R K K + ++Q + DL++LY R +K
Sbjct: 550 LD--LVQKYVGAEGKTPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ + + EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALR
Sbjct: 606 AFSADDEMQREFEEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALR 664
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +
Sbjct: 665 AAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGM 723
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G ++I+VGTH LL V Y +LGLLVVDEEQRFGV KEKI + +DVLTL+ATPI
Sbjct: 724 KNGTVDIVVGTHRLLSKDVEYQDLGLLVVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPI 783
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R+
Sbjct: 784 PRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRV 843
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + D + P +A AHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 844 ESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPN 903
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+ VQD + GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E EL
Sbjct: 904 VNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTEL 963
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ K E VP
Sbjct: 964 GSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP-- 1021
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+IDI + +P YI +EM + + L + ++G+ P +E
Sbjct: 1022 -VEIDIQADAYIPEYYITDGRQKIEMYKRFRNI--ESLNDLEDLQSDMIDRFGEYPEEVE 1078
Query: 741 ILLKKLYVRRMAADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTS 787
L ++ A ++G IT +++ G++ ++ ++ F M+
Sbjct: 1079 YLFTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDVVMQIIGEFGRMV----- 1133
Query: 788 EVHRNSLTFEGDQIKAELLLELPREQLLNWIFQC 821
+ EG Q+K + + + + L W++Q
Sbjct: 1134 -----GVGMEGTQLK--ITINVQNKPLKEWLYQV 1160
>gi|441496778|ref|ZP_20979005.1| Transcription-repair coupling factor [Fulvivirga imtechensis AK7]
gi|441439642|gb|ELR72957.1| Transcription-repair coupling factor [Fulvivirga imtechensis AK7]
Length = 1122
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 245/626 (39%), Positives = 378/626 (60%), Gaps = 23/626 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
+L+ GD+V H GIGKF G+ K +V I ++ + D + + + + + +Y
Sbjct: 436 TLQPGDFVTHIDYGIGKFAGLEKREVNGKEQEAIRLIYRD--DDLLYVSIHSLHK-ISKY 492
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ T P +SKL + WE +K + K + + DL+ELY R + + K+ +
Sbjct: 493 SGKEGT--PPAISKLG-SPEWENKKKRVKKQVADIAKDLIELYAKRKQAPGYAFTKDSFL 549
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E + F Y+ TPDQ KA DV+ D+ +++ PMDRL+CGDVGFGKTEVA+RA F V+
Sbjct: 550 QTELESSFIYDDTPDQAKATEDVKEDM-QQQHPMDRLVCGDVGFGKTEVAIRAAFKAVTD 608
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
KQ VL PT +LA QH+ +R S +P +KV ++RF+S E +E L +K G +I+
Sbjct: 609 NKQVAVLVPTTILAMQHYRTFKDRLSAFP-VKVEYINRFKSAKEIKETLKRVKEGKTDIL 667
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH ++ V + +LGLL++DEEQ+FGVK KEK+ +++VD LTL+ATPIPRTL+ +L
Sbjct: 668 IGTHRIVSKDVQFKDLGLLIIDEEQKFGVKVKEKLKEMRVNVDALTLTATPIPRTLHFSL 727
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+ISTPPP R P+ T L F++E + AI +EL RGGQVF+V R+ +E +
Sbjct: 728 MGARDLSIISTPPPNRQPVTTELHTFNEEVIRDAISFELRRGGQVFFVHNRVNDIESVGN 787
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+ + P I IAHGQ LE+ M KF +G +L+ TNI+ESGLDI NANTII+
Sbjct: 788 IILKLVPDARIGIAHGQMEGPVLEKAMLKFIEGEYDVLVSTNIIESGLDIPNANTIIINQ 847
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A YL P LS A +RL+ LEE +LG GF++A
Sbjct: 848 AHMFGLSDLHQMRGRVGRSNKKAFCYLLTPPTIGLSSDARKRLSTLEEFSDLGDGFKVAM 907
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCV-------ISVPYKSVQ 683
+D+ IRG G + G +Q+G + ++G D++ ++L E++ ++ + +S K +
Sbjct: 908 RDLDIRGAGNLLGAEQSGFISDLGFDMYHKILDEAVQELKQTEFRDLFVKELSEAAKVLV 967
Query: 684 IDININPRL----PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
D NI L P EY+ ++ + + ++ + +D L QF SL ++G P S+
Sbjct: 968 QDCNIETDLEVIIPDEYVANISERLGLYSQLDSIKTED--ELRQFQLSLIDRFGPMPDSV 1025
Query: 740 EILLKKLYVRRMAADIGITKIYASGK 765
+ L++ + +R +A ++G K+ G+
Sbjct: 1026 KELIETVRLRWLAEELGFEKLSLKGE 1051
>gi|399888052|ref|ZP_10773929.1| transcription-repair coupling factor [Clostridium arbusti SL206]
Length = 1172
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 248/673 (36%), Positives = 402/673 (59%), Gaps = 17/673 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRY 211
L+ GDY+VH GIG + GIK +V+ +Y+ + Y+ D +PV+Q ++ +Y
Sbjct: 503 LKPGDYIVHVNHGIGVYKGIKQLEVENHKK---DYLELSYSGDDKLFVPVEQLD-LVQKY 558
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ ++ P+ ++KL W + K K K +I ++ +L++LY R Y K+
Sbjct: 559 -IGSDGNSPK-INKLG-GNEWNKAKNKVKKSINEIAEELVKLYAIRSTLNGYTYSKDTVW 615
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FPY+ TPDQ A D++ D+ E MDRLICGDVG+GKTEVA+R F V
Sbjct: 616 QKQFEEEFPYDETPDQISAIEDIKNDM-EIGKVMDRLICGDVGYGKTEVAIRTAFKAVMD 674
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH+ + +RF +P + V ++SRF++ A+++ + +K G+++I+
Sbjct: 675 GKQVAFLVPTTILAEQHYTNLKKRFFDFP-VTVDMISRFRTSAQQKATIKSLKEGNIDIL 733
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH +L V++ +LGLL+VDEEQRFGV KEKI + K ++DVLTL+ATPIPRTL+++L
Sbjct: 734 IGTHRILQKDVLFKDLGLLIVDEEQRFGVTHKEKIKNLKRNIDVLTLTATPIPRTLHMSL 793
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG RD S++ TPP ER P++T++ ++ + + A+ EL+RGGQVF+V R++ +++
Sbjct: 794 TGVRDISVMETPPEERYPVQTYVVEYNDQLIRDAVMRELNRGGQVFFVYNRVETIKDMAS 853
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L + P +A+AHGQ RQLE M F IL+CT I+E+G+DIQN NT+++ D
Sbjct: 854 KLSKLIPEAKVAVAHGQMTERQLETEMFAFMNKEYDILLCTTIIETGIDIQNVNTMVIYD 913
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR ++ A+AY Y +L++ A +RL A++E ELG GF++A
Sbjct: 914 ADKMGLSQLYQLRGRVGRTNRMAYAYFTYRKDKMLTEVAEKRLKAIKEFTELGSGFKIAM 973
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G Q G + +G DL+ ML +++ + + + P ++ I++ ++
Sbjct: 974 RDLEIRGAGNMMGSAQHGHMAAIGYDLYCRMLEDAIKQY-KGDIEKEPIET-SIELKVDA 1031
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+PS YI + +E+ + +D + +Q E L +Y P S+ L+ Y++
Sbjct: 1032 YIPSSYIENEVQKIEIYKKIASIESRDEFTDIQ--EELEDRYSNIPISVANLMDIAYIKS 1089
Query: 751 MAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ-IKAELLLEL 809
+A IGI + + + K ++ +I + R + D+ I L +L
Sbjct: 1090 LARQIGIVDVRDRIESINFKFEDKDRITDKLIQGLIKNYKRRIVFKSEDKPIIVYNLRDL 1149
Query: 810 PREQLLNWIFQCL 822
RE LLN + + L
Sbjct: 1150 KRENLLNDLIELL 1162
>gi|295702293|ref|YP_003595368.1| transcription-repair coupling factor [Bacillus megaterium DSM 319]
gi|294799952|gb|ADF37018.1| transcription-repair coupling factor [Bacillus megaterium DSM 319]
Length = 1176
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 247/659 (37%), Positives = 402/659 (61%), Gaps = 30/659 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L GDYVVH GIG+++G++ ++ + +Y+ I+Y +G KL PV+Q
Sbjct: 493 RIKSYSELNVGDYVVHVNHGIGRYLGMETLEINGNHK---DYIHIKY-EGSDKLYVPVEQ 548
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
++ + + +E K P+ + KL W++ K K + ++Q + DL++LY R K
Sbjct: 549 IDQV--QKYVGSEGKEPK-VYKLGGND-WKKVKRKVESSVQDIADDLIKLYAEREASKGY 604
Query: 264 PY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ P EF FPY+ T DQ ++ ++++D+ E E PMDRL+CGDVG+GKTEVA+R
Sbjct: 605 AFSPDGDLQREFETAFPYQETEDQLRSVQEIKKDM-EHERPMDRLLCGDVGYGKTEVAIR 663
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F V+ GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF+S+ +++E + +
Sbjct: 664 AAFKAVTDGKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRSRKQQQETIKGL 722
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G +++++GTH LL V+Y +LGLLV+DEEQRFGV KEKI K +VDVLTL+ATPI
Sbjct: 723 KNGTVDVVIGTHRLLSKDVIYKDLGLLVIDEEQRFGVTHKEKIKQMKANVDVLTLTATPI 782
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL R GQV+++ R+
Sbjct: 783 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPVLVREAIERELARDGQVYFLYNRV 842
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ +E + + P + AHG+ +LE + F +G +++ T I+E+G+DI N
Sbjct: 843 EDIERKAEEISMLVPDARVTYAHGKMNETELEAVILSFLEGEYDVIVSTTIIETGVDIPN 902
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+IV + + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E EL
Sbjct: 903 VNTLIVNNADKMGLSQLYQLRGRVGRSNRVAYAYFTYHKDKVLTEVAEKRLQAIKEFTEL 962
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 682
G GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + SV + +V
Sbjct: 963 GSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGSDGESVKF-NV 1021
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
+++++++ +P +YI +EM A +DI + + + ++G+ P +E
Sbjct: 1022 EMNLDLDAYIPDQYITDGRLKIEMYKRFRGIEALEDI---QELQDEMIDRFGEYPAEVEY 1078
Query: 742 LLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 800
L K + TK+YA +V +++ ++ + +S V L GDQ
Sbjct: 1079 LFK----------VAETKVYAMQNLVESILQSKQEISILLSEEASSTVDGQKLFMLGDQ 1127
>gi|373464510|ref|ZP_09556047.1| transcription-repair coupling factor [Lactobacillus kisonensis
F0435]
gi|371762365|gb|EHO50899.1| transcription-repair coupling factor [Lactobacillus kisonensis
F0435]
Length = 771
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 258/681 (37%), Positives = 410/681 (60%), Gaps = 28/681 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYRY 211
L+ GDYVVH GIG++ G++ ++ D +Y+ I Y D AKL PV Q + ++ +Y
Sbjct: 90 LKPGDYVVHVNHGIGRYEGMQ-TMEVDGKHQ-DYLTISYRDS-AKLFIPVTQLN-LIQKY 145
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVA--IQKMVVDLMELYLHRLKQKRPPYPKNP 269
+ +E K PR ++KL E KTK KVA I+ + +L++LY R +K +P +
Sbjct: 146 -VSSEDKHPR-INKLG---GGEWAKTKRKVASKIEDIADELIDLYAKRGSEKGYAFPPDD 200
Query: 270 AI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328
++ AEF A FPY TPDQ ++ +++RD+ ER+ PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 201 SLQAEFEASFPYTETPDQLRSATEIKRDM-ERQHPMDRLLVGDVGYGKTEVALRAAFKTI 259
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 388
GKQ L PT +LA+QH++ + +RFS YP I V +LSRFQ+KA+ +E L +K+G ++
Sbjct: 260 EVGKQVAFLVPTTILAQQHYETMLDRFSDYP-ITVRVLSRFQTKAQVKETLAGLKNGTVD 318
Query: 389 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 448
++VGTH LL V +N+LGLL++DEEQRFGVK KE+I + VDVLTL+ATPIPRTL +
Sbjct: 319 VVVGTHRLLSKDVHFNDLGLLIIDEEQRFGVKHKERIKEMRSDVDVLTLTATPIPRTLNM 378
Query: 449 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 508
++ G RD S+I TPP R PI+T++ + + AI+ E+ RGGQVFY+ R++ +E
Sbjct: 379 SMMGVRDLSVIETPPSNRYPIQTYVIEQNAGTIREAIEREMARGGQVFYLHNRVEDIERT 438
Query: 509 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 568
++ + P + HGQ Q+E+ + F G +L+ T I+E+G+DI N NT+ V
Sbjct: 439 VEQISALVPSARVGYIHGQMSENQMEDILYDFINGEYDVLVTTTIIETGVDIPNVNTLFV 498
Query: 569 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 628
++ + GL+QLYQLRGR+GR+ + A++Y Y +L++ +RL A+ + ELG GF++
Sbjct: 499 ENADRMGLSQLYQLRGRIGRSSRVAYSYFMYQPNKVLTEIGEKRLEAIRDFTELGSGFKI 558
Query: 629 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS-VQIDIN 687
A +D+ IRG G + G+QQ G V +VG DL+ +ML ++++K YK+ I+++
Sbjct: 559 AMRDLSIRGAGNLLGKQQHGFVDSVGYDLYTQMLSDAVAKKRGK---DFEYKTDATIELD 615
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
+ LPS+YI + +E+ + QD L + + L ++G S+ LL
Sbjct: 616 LEAYLPSDYIQDNQQKIEIYKRIRQIENQD--QLTEVKDDLIDRFGDYGDSVANLLDIAE 673
Query: 748 VRRMAADIGITKIYASGKMVGMKTNMNKKV---FKMMIDSMTSEVHRNSLTFEGDQIKAE 804
++ A + KI+ V M + K ++++++ R ++ E + +
Sbjct: 674 LKMYADYALVAKIHQQAPKVTMTFSSRANAEFESKELLEAISKTKFRATINTENETYLIQ 733
Query: 805 LLLELPREQLLNWIFQCLAEL 825
L ++ + +W+ Q +A L
Sbjct: 734 LTVQ---PNMKSWLHQLVALL 751
>gi|253730971|ref|ZP_04865136.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253725283|gb|EES94012.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus USA300_TCH959]
Length = 1168
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALYSGITLIKDKGKIIDI 1102
>gi|164688875|ref|ZP_02212903.1| hypothetical protein CLOBAR_02523 [Clostridium bartlettii DSM 16795]
gi|164602079|gb|EDQ95544.1| transcription-repair coupling factor [Clostridium bartlettii DSM
16795]
Length = 1131
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 249/614 (40%), Positives = 377/614 (61%), Gaps = 24/614 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK----FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRML 208
L+ GDYVVH+ GIG++ GI+ ++KD Y+ I Y G +P+ Q + +
Sbjct: 493 LKIGDYVVHENSGIGRYTGIEQISVNGIKKD------YLKIIYQGGDNLYVPIDQMDK-V 545
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
+Y + ++ ++ + L+KL T W + K K K I+ M DL+ELY R + K + K+
Sbjct: 546 QKY-IGSDAEKVK-LNKLG-TNEWTKAKAKVKREIEDMTKDLVELYAKREQIKGYKFSKD 602
Query: 269 PAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
EF + FPYE T DQ KA + ++D+ E MDRLICGDVG+GKTEVA+RA F
Sbjct: 603 TVWQKEFESMFPYEETEDQLKAIKETKKDM-ESSKVMDRLICGDVGYGKTEVAIRAAFKA 661
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
KQ +L PT +LA+QH++ +RF+ YP I+V +LSRF++ ++ E ++ + G +
Sbjct: 662 CMDQKQVAILVPTTILAQQHYNTFKQRFANYP-IRVEVLSRFKTAKQQREIINDARKGLV 720
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH ++ + NLGL+V+DEEQRFGVK KE + K +VDVLTLSATPIPRTL+
Sbjct: 721 DILIGTHRIISDDINLPNLGLVVIDEEQRFGVKHKESLKKIKNTVDVLTLSATPIPRTLH 780
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVI-SAIKYELDRGGQVFYVLPRIKGLE 506
++L+G RD S+I PP ER P+ T++ A +KE +I I+ E+ RGGQVF+V R++ +E
Sbjct: 781 MSLSGIRDMSVIEEPPQERHPVITYV-AEAKESIIQDEIEREIARGGQVFFVYNRVEHIE 839
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
E +Q+ P +A+AHG+ S+ LE + F +L+CT IVE+G+DI NANT+
Sbjct: 840 EMASMVQRLVPEAKVAVAHGRMTSKTLENIILGFLNKEYDVLVCTTIVETGMDISNANTM 899
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
I+ D + GLAQLYQLRGRVGR+ ++ +AYL Y +LS+ A +RL A+ E E G GF
Sbjct: 900 IIYDADKMGLAQLYQLRGRVGRSSRQGYAYLMYEKDKVLSEVAEKRLKAIREFTEFGSGF 959
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 686
++A +D+ IRG G I G QQ G + +G DL+ +ML E++ KV V+I++
Sbjct: 960 KIAMRDLEIRGAGNILGSQQHGHMAVIGYDLYVKMLNEAIKKV--KGEDIEEEIDVEINL 1017
Query: 687 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
+N +P+ YI + +EM + +D + + TE L ++ P S++ LL
Sbjct: 1018 AVNAYIPNSYIPEELDKIEMYKKIASIENKD--DMKEVTEELIDRFSDVPRSVQTLLSIA 1075
Query: 747 YVRRMAADIGITKI 760
Y++ M + I K+
Sbjct: 1076 YIKSMCKKLKIEKV 1089
>gi|410453266|ref|ZP_11307224.1| transcription-repair coupling factor [Bacillus bataviensis LMG 21833]
gi|409933389|gb|EKN70317.1| transcription-repair coupling factor [Bacillus bataviensis LMG 21833]
Length = 1178
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 251/629 (39%), Positives = 385/629 (61%), Gaps = 16/629 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI+ V + V +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELKIGDYVVHVNHGIGKYLGIETLVI--NGVHKDYLHIRY-QGTDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
++ +Y + +E K P+ + KL T W++ K K + ++Q + DL++LY R
Sbjct: 550 D-LVQKY-VGSEGKEPK-VYKLGGTD-WKKVKKKVESSVQDIADDLIKLYAEREAAVGYG 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P EF F Y+ T DQ ++ +++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDGDMQREFETSFAYQETEDQLRSIVEIKKDM-ERLRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F ++ GKQ L PT +LA+QHF+ + ERF YP I +GLLSRF+SK ++ E + +K
Sbjct: 665 AFKAIADGKQVAFLVPTTILAQQHFETLRERFQDYP-INIGLLSRFRSKKQQTETMKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL +VY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 AGTVDIVVGTHRLLSKDIVYRDLGLLIIDEEQRFGVTHKEKIKKLKTNVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL R GQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGSLVREAIERELARDGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E + + P + AHGQ +LE M F G +L+ T I+E+G+DI N
Sbjct: 844 DIERKAEEISMLVPDARVTCAHGQMTENELESVMISFLAGEFDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ V KSV+
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEARRGELGAEVK-KSVE 1022
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ I+ +P YI +EM A + + + + E + ++G+ P ++ L
Sbjct: 1023 IDLEIDAYIPDTYIKDGHQKIEMYKRFR--AIESLEDMEELQEEMHDRFGEYPAEVDYLF 1080
Query: 744 KKLYVRRMAADIGITKIYASGKMVGMKTN 772
+ ++ + G+ +I + + V + N
Sbjct: 1081 QIAEIKVHSLINGVEQIKQAKQEVTVLVN 1109
>gi|423075756|ref|ZP_17064470.1| transcription-repair coupling factor [Desulfitobacterium hafniense
DP7]
gi|361853168|gb|EHL05349.1| transcription-repair coupling factor [Desulfitobacterium hafniense
DP7]
Length = 1197
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 251/614 (40%), Positives = 380/614 (61%), Gaps = 23/614 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--PVKQASRM 207
L+ GD+VVH GIG+F+GI+ V+KD Y ++YA G KL P+ Q +
Sbjct: 523 LKPGDFVVHVHHGIGQFMGIERIAVGGVEKD------YFSVKYA-GQDKLYVPLDQLN-F 574
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-P 266
L +Y + P+ L KL + W++ K K K AI++M DL++LY R K + P
Sbjct: 575 LQKYLGSDAETLPK-LYKLGGSE-WKKVKAKAKSAIKEMAFDLVKLYAQREATKGYAFSP 632
Query: 267 KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
N EF +FPY+ TPDQ + ++V++D+ R+ PMDRL+CGDVG+GKTEVALRA F
Sbjct: 633 DNVWQQEFEEKFPYQETPDQMQCIVEVKQDMM-RQRPMDRLLCGDVGYGKTEVALRAAFK 691
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
V KQ VL PT +LA+QHF+ ERF YP + + +LSRF+S E++ L +K G
Sbjct: 692 AVMDSKQVAVLVPTTILAQQHFNTFQERFMGYP-VSIQMLSRFRSAKEQKLILQGLKEGS 750
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
++I+VGTH L+ + + +LGLL+VDEEQRFGV KEK+ + K +VDVLTLSATPIPRTL
Sbjct: 751 IDIVVGTHKLVSDSIKFKDLGLLIVDEEQRFGVAHKEKLKTLKANVDVLTLSATPIPRTL 810
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
+++L G RD S+I TPP +R P++T+++ F + V AI+ E+ RGGQVF+V R++ +E
Sbjct: 811 HMSLVGVRDLSIIETPPEDRFPVQTYVAEFRPDVVREAIRREIQRGGQVFFVHNRVEDME 870
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
+ + FL Q P IAHGQ ++LE+ M F + +L+CT I+E+GLD+ N NT+
Sbjct: 871 QVVHFLSQLVPEARYGIAHGQMSEKELEQEMLAFLEHESDVLVCTTIIETGLDMPNVNTL 930
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
I+ + + GL QLYQLRGRVGR+++ A++Y Y + +L++ A +RLAA+ E E G G
Sbjct: 931 IIDEADRLGLGQLYQLRGRVGRSNRRAYSYFLYKPQKVLTEVAEKRLAAIREFTEFGSGL 990
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 686
++A +D+ IRG G + G QQ G + +G +L+ +ML E++ ++ V S I++
Sbjct: 991 KIAMRDLEIRGAGNLIGAQQHGHLAALGFELYSQMLKEAVQELKGEQVEEKIETS--IEV 1048
Query: 687 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
++ LP YI + + ++ +M + L ++G P +E LLK +
Sbjct: 1049 QVDAYLPDIYIGERQLKAALYQRMVAIDNEEDLSMM--IDELIDRFGTPPREVENLLKIV 1106
Query: 747 YVRRMAADIGITKI 760
++ MA+ + I +I
Sbjct: 1107 RIKWMASGMKIEQI 1120
>gi|219666201|ref|YP_002456636.1| transcription-repair coupling factor [Desulfitobacterium hafniense
DCB-2]
gi|219536461|gb|ACL18200.1| transcription-repair coupling factor [Desulfitobacterium hafniense
DCB-2]
Length = 1197
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 251/614 (40%), Positives = 380/614 (61%), Gaps = 23/614 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--PVKQASRM 207
L+ GD+VVH GIG+F+GI+ V+KD Y ++YA G KL P+ Q +
Sbjct: 523 LKPGDFVVHVHHGIGQFMGIERIAVGGVEKD------YFSVKYA-GQDKLYVPLDQLN-F 574
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-P 266
L +Y + P+ L KL + W++ K K K AI++M DL++LY R K + P
Sbjct: 575 LQKYLGSDAETLPK-LYKLGGSE-WKKVKAKAKSAIKEMAFDLVKLYAQREATKGYAFSP 632
Query: 267 KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
N EF +FPY+ TPDQ + ++V++D+ R+ PMDRL+CGDVG+GKTEVALRA F
Sbjct: 633 DNVWQQEFEEKFPYQETPDQMQCIVEVKQDMM-RQRPMDRLLCGDVGYGKTEVALRAAFK 691
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
V KQ VL PT +LA+QHF+ ERF YP + + +LSRF+S E++ L +K G
Sbjct: 692 AVMDSKQVAVLVPTTILAQQHFNTFQERFMGYP-VSIQMLSRFRSAKEQKLILQGLKEGS 750
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
++I+VGTH L+ + + +LGLL+VDEEQRFGV KEK+ + K +VDVLTLSATPIPRTL
Sbjct: 751 IDIVVGTHKLVSDSIKFKDLGLLIVDEEQRFGVAHKEKLKTLKANVDVLTLSATPIPRTL 810
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
+++L G RD S+I TPP +R P++T+++ F + V AI+ E+ RGGQVF+V R++ +E
Sbjct: 811 HMSLVGVRDLSIIETPPEDRFPVQTYVAEFRPDVVREAIRREIQRGGQVFFVHNRVEDME 870
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
+ + FL Q P IAHGQ ++LE+ M F + +L+CT I+E+GLD+ N NT+
Sbjct: 871 QVVHFLSQLVPEARYGIAHGQMSEKELEQEMLAFLEHESDVLVCTTIIETGLDMPNVNTL 930
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
I+ + + GL QLYQLRGRVGR+++ A++Y Y + +L++ A +RLAA+ E E G G
Sbjct: 931 IIDEADRLGLGQLYQLRGRVGRSNRRAYSYFLYKPQKVLTEVAEKRLAAIREFTEFGSGL 990
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 686
++A +D+ IRG G + G QQ G + +G +L+ +ML E++ ++ V S I++
Sbjct: 991 KIAMRDLEIRGAGNLIGAQQHGHLAALGFELYSQMLKEAVQELKGEQVEEKIETS--IEV 1048
Query: 687 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
++ LP YI + + ++ +M + L ++G P +E LLK +
Sbjct: 1049 QVDAYLPDIYIGERQLKAALYQRMVAIDNEEDLSMM--IDELIDRFGTPPREVENLLKIV 1106
Query: 747 YVRRMAADIGITKI 760
++ MA+ + I +I
Sbjct: 1107 RIKWMASGMKIEQI 1120
>gi|423328429|ref|ZP_17306236.1| transcription-repair coupling factor [Myroides odoratimimus CCUG
3837]
gi|404604865|gb|EKB04481.1| transcription-repair coupling factor [Myroides odoratimimus CCUG
3837]
Length = 1120
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 242/629 (38%), Positives = 374/629 (59%), Gaps = 24/629 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
SL GDYV H GIGKF G+ K V+ + I+ V YAD + + +Y
Sbjct: 433 SLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLV---YADNDIVYVSIHSLHKISKY 489
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYL-HRLKQKRPPYPKNPA 270
N + P+ + KL + AW+ K K K ++ + +L++LY RL++ P +
Sbjct: 490 N-GKDGAVPK-IHKLG-SAAWKTLKNKTKARVKHIAFNLIQLYAKRRLQKGFQCAPDSYL 546
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E + F YE TPDQ KA +V+ D+ E+E PMDRL+CGDVGFGKTEVA+RA F +V
Sbjct: 547 QHELESSFIYEDTPDQLKATQEVKADM-EQERPMDRLVCGDVGFGKTEVAIRAAFKMVDN 605
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ +L PT +LA QH+ +ER P ++V ++RF++ +K E L ++ G ++I+
Sbjct: 606 GKQVAILVPTTILAFQHYQTFTERLKDMP-VRVSYINRFRTAKQKAEILKDLEAGKIDIL 664
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ +V+ +LGLL++DEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L
Sbjct: 665 IGTHQLVNKGIVFKDLGLLIIDEEQKFGVAVKDKLKTISENVDTLTLTATPIPRTLQFSL 724
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S+ISTPPP R PI+T++ F++E + A+ YE++RGGQV+++ RI+ + E
Sbjct: 725 MAARDLSVISTPPPNRYPIETNVVGFNEEVIRDAVSYEIERGGQVYFINNRIENIREVAG 784
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P + I HGQ ++LEE M F G +L+ T I+ESGLD+ NANTI++ +
Sbjct: 785 MIQRLVPDAKVGIGHGQMDGKKLEELMLAFMNGEFDVLVATTIIESGLDVPNANTILINN 844
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A Y P S+++++A +R+ ALE+ +LG G +A
Sbjct: 845 ANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSVMTEEARKRIQALEQFSDLGSGLNIAM 904
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML-----------FESLSKVDEHCVISVPY 679
KD+ IRG G I G +Q+G + +G + + +++ F+ L + + V
Sbjct: 905 KDLEIRGAGDILGGEQSGFINEIGFETYQKIMQEAIEELKANEFKDLYEEENKEENKVFV 964
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
K QID + P EYIN++ + + NE +++ L Q+ + L ++G P
Sbjct: 965 KDTQIDTDFEILFPDEYINNITERLNLYNELSLITNEEV--LQQYEQRLIDRFGALPRQA 1022
Query: 740 EILLKKLYVRRMAADIGITKIYA-SGKMV 767
LL L ++ AA++GI KI GKM+
Sbjct: 1023 IALLNSLRIKWHAANMGIEKIVMKQGKMI 1051
>gi|386042551|ref|YP_005961356.1| transcription-repair coupling factor [Listeria monocytogenes 10403S]
gi|345535785|gb|AEO05225.1| transcription-repair coupling factor [Listeria monocytogenes 10403S]
Length = 1179
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 264/699 (37%), Positives = 407/699 (58%), Gaps = 49/699 (7%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L+ GDYVVH GI ++VG++ D+ + V +Y+ + Y G KL PV Q
Sbjct: 494 RIQSYSELKVGDYVVHVNHGIARYVGMETLDI---NGVHKDYLLLVY-QGEDKLFIPVDQ 549
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L + + E K PR L+KL W+R K K + ++Q + DL++LY R +K
Sbjct: 550 LD--LVQKYVGAEGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ + + EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALR
Sbjct: 606 AFSADDEMQREFEEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALR 664
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +
Sbjct: 665 AAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGM 723
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G ++++VGTH LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPI
Sbjct: 724 KNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPI 783
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R+
Sbjct: 784 PRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRV 843
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + D + P +A AHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 844 ESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPN 903
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+ VQD + GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E EL
Sbjct: 904 VNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTEL 963
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ K E VP
Sbjct: 964 GSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP-- 1021
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+IDI + +P YI +EM + + L + ++G+ P +E
Sbjct: 1022 -VEIDIQADAYIPEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVE 1078
Query: 741 ILLKKLYVRRMAADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTS 787
L ++ A ++G IT +++ G++ ++ ++ F M+
Sbjct: 1079 YLFTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----- 1133
Query: 788 EVHRNSLTFEGDQIKAELLLELPREQLLNWIFQC--LAE 824
+ EG Q+K + + + + L W++Q LAE
Sbjct: 1134 -----GVGMEGTQLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|366163462|ref|ZP_09463217.1| transcription-repair coupling factor [Acetivibrio cellulolyticus CD2]
Length = 1177
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/614 (39%), Positives = 378/614 (61%), Gaps = 22/614 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYAD-GMAKLPVKQASRMLYRY 211
L GD+VVH+ GIGK++GI+ V ++ + +Y+ I+Y D +P Q ++ +Y
Sbjct: 510 DLNIGDFVVHQSHGIGKYIGIEQLVVEN--IKKDYLKIQYQDDAFLYVPTNQLD-IIQKY 566
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E K P+ LSKL + W + KTK K +++++ +L++LY R + + +
Sbjct: 567 -IGSEGKSPK-LSKLGGSD-WIKTKTKAKESLKELAEELIKLYAMREASEGHAFGSDTIW 623
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F QFPY+ T DQ K +++RD+ E PMDRL+CGDVG+GKTEVA+RAIF V
Sbjct: 624 QKQFEEQFPYQETDDQLKCIEEIKRDM-ESNKPMDRLLCGDVGYGKTEVAIRAIFKAVMD 682
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT VLA+Q ++ ER +P + V ++SRF+++ E++ L +K G ++++
Sbjct: 683 GKQVAYLVPTTVLAQQQYNNFKERMKDFP-VTVEMVSRFRTQTEQKHILKDVKAGMVDVL 741
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH LL + + NLGLLV+DEEQRFGV KEKI + + +VDVLTL+ATPIPRTL++++
Sbjct: 742 IGTHRLLQKDIAFKNLGLLVIDEEQRFGVMHKEKIKNMRANVDVLTLTATPIPRTLHMSM 801
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G +D S I PP ER P++T++ + E + AI E+ R GQVFY+ R++ +
Sbjct: 802 VGIKDISTIEDPPEERYPVQTYVMEHNNEVIKEAINREMARNGQVFYLYNRVRSINVKAA 861
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
++ P IA+AHGQ +LE+ M +F G +L+CT I+ESGLD+ N NTIIV+D
Sbjct: 862 EIKNMVPDARIAVAHGQMNESELEDIMFRFINGEYDVLVCTVIIESGLDMPNVNTIIVED 921
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GLAQLYQLRGRVGR+++ A+AY+ Y +LS+ A +RL A++E E G GF++A
Sbjct: 922 SDKMGLAQLYQLRGRVGRSNRMAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAM 981
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS----KVDEHCVISVPYKSVQIDI 686
+D+ IRG G + G QQ G + VG D++ +L E+++ K +E V + ID+
Sbjct: 982 RDLQIRGAGNLLGAQQHGHIDLVGYDMYCRLLSEAVNELSGKSNEEEV------EISIDV 1035
Query: 687 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
N++ + + YI+ +EM A+ QD + + L +YG P + L+K
Sbjct: 1036 NLSAYIDNSYISSENEKIEMYKRI--ASIQDEQDALDVEDELIDRYGNIPVPVSNLIKIA 1093
Query: 747 YVRRMAADIGITKI 760
+++ +A + G + +
Sbjct: 1094 HIKTLAMNCGFSSV 1107
>gi|225387033|ref|ZP_03756797.1| hypothetical protein CLOSTASPAR_00783 [Clostridium asparagiforme DSM
15981]
gi|225046851|gb|EEG57097.1| hypothetical protein CLOSTASPAR_00783 [Clostridium asparagiforme DSM
15981]
Length = 1221
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 245/611 (40%), Positives = 383/611 (62%), Gaps = 17/611 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRM--LYR 210
L GDYVVH++ G+G + GI+ V++D + +Y+ IEY DG LP A+R+ + +
Sbjct: 549 LAVGDYVVHEEHGLGIYRGIE-KVERDK-ITKDYIKIEYGDGGNLYLP---ATRLESIQK 603
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA 270
Y E K+P+ L++L + W + K++ K A+Q++ DL++LY R ++ Y K+
Sbjct: 604 YA-GAEAKKPK-LNRLG-GSEWSKTKSRVKGAVQEIAKDLVKLYAARQEKAGFQYGKDTV 660
Query: 271 IA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF FPY+ T DQ A V+ D+ R+ MDRL+CGDVG+GKTEVALRA F V
Sbjct: 661 WQREFEELFPYDETDDQLDAIDSVKHDMESRKI-MDRLVCGDVGYGKTEVALRAAFKAVQ 719
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
KQ + L PT +LA+QH++ +R +P ++V +LSRF + +++++ L+ ++ G ++I
Sbjct: 720 DSKQVVYLVPTTILAQQHYNTFVQRMKDFP-VRVDMLSRFCTPSQQKKTLEDLRKGMVDI 778
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH +L + + +LGLL+VDEEQRFGV KEKI K +VDVLTL+ATPIPRTL+++
Sbjct: 779 VIGTHRVLSKDMKFRDLGLLIVDEEQRFGVAHKEKIKQMKENVDVLTLTATPIPRTLHMS 838
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
L G RD S++ PP +R PI+T++ +++E + AI EL RGGQV+YV R+ ++E
Sbjct: 839 LAGIRDMSVLEEPPVDRTPIQTYVMEYNEEMIREAINRELSRGGQVYYVYNRVTDIDEVA 898
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+ + P + AHGQ +LE M F G I +L+ T I+E+GLDI NANT+IV
Sbjct: 899 NRVAALVPEAVVTFAHGQMREHELERIMADFINGEIDVLVSTTIIETGLDIPNANTMIVH 958
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GL+QLYQLRGRVGR+++ ++A+L Y LL ++A +RL A+ E ELG G ++A
Sbjct: 959 DADRMGLSQLYQLRGRVGRSNRTSYAFLMYKRDKLLKEEAEKRLQAIREFTELGSGIKIA 1018
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G + G +Q G + VG DL+ +ML E++ + V S Y++V ++ +IN
Sbjct: 1019 MRDLEIRGAGNVLGAEQHGHMEAVGYDLYCKMLNEAVLALKGETVESETYETV-VECDIN 1077
Query: 690 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+P+ YI + +++ +D + MQ + L ++G P S+E LLK ++
Sbjct: 1078 AYIPAYYIKNEYQKLDIYKRISAIETEDEYMDMQ--DELTDRFGDIPKSVENLLKIAALK 1135
Query: 750 RMAADIGITKI 760
MA +T++
Sbjct: 1136 AMAHRAYVTEV 1146
>gi|418320541|ref|ZP_12931898.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus VCU006]
gi|418874519|ref|ZP_13428786.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC93]
gi|365227032|gb|EHM68239.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus VCU006]
gi|377772266|gb|EHT96017.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIGC93]
Length = 1168
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 240/626 (38%), Positives = 389/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTVEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|254829305|ref|ZP_05233992.1| transcription-repair coupling factor [Listeria monocytogenes FSL
N3-165]
gi|258601718|gb|EEW15043.1| transcription-repair coupling factor [Listeria monocytogenes FSL
N3-165]
Length = 1179
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 264/699 (37%), Positives = 407/699 (58%), Gaps = 49/699 (7%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L+ GDYVVH GI ++VG++ D+ + V +Y+ + Y G KL PV Q
Sbjct: 494 RIQSYSELKVGDYVVHVNHGIARYVGMETLDI---NGVHKDYLLLVY-QGEDKLFIPVDQ 549
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L + + E K PR L+KL W+R K K + ++Q + DL++LY R +K
Sbjct: 550 LD--LVQKYVGAEGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ + + EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALR
Sbjct: 606 AFSADDEMQREFEEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALR 664
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +
Sbjct: 665 AAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGM 723
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G ++++VGTH LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPI
Sbjct: 724 KNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPI 783
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R+
Sbjct: 784 PRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRV 843
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + D + P +A AHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 844 ESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPN 903
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+ VQD + GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E EL
Sbjct: 904 VNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTEL 963
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ K E VP
Sbjct: 964 GSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP-- 1021
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+IDI + +P YI +EM + + L + ++G+ P +E
Sbjct: 1022 -VEIDIQADAYIPEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVE 1078
Query: 741 ILLKKLYVRRMAADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTS 787
L ++ A ++G IT +++ G++ ++ ++ F M+
Sbjct: 1079 YLFTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----- 1133
Query: 788 EVHRNSLTFEGDQIKAELLLELPREQLLNWIFQC--LAE 824
+ EG Q+K + + + + L W++Q LAE
Sbjct: 1134 -----GVGMEGTQLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|377809044|ref|YP_005004265.1| transcription-repair coupling factor [Pediococcus claussenii ATCC
BAA-344]
gi|361055785|gb|AEV94589.1| transcription-repair coupling factor [Pediococcus claussenii ATCC
BAA-344]
Length = 1173
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 249/681 (36%), Positives = 408/681 (59%), Gaps = 19/681 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRMLYRYN 212
L+ GD+VVH GIGKF+G+ + V +Y+ I Y G +PV Q + M+ +Y
Sbjct: 495 LKPGDFVVHVNHGIGKFIGMT--TMEVDGVHQDYITIHYKGSGQLFIPVTQLN-MVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ E K P+ L+KL + W + K I+ + +L+ELY R +K + P +
Sbjct: 551 VAAEGKSPK-LNKLGGSD-WAKTKRSVASKIEDIADELVELYAKRESEKGFAFNPDDDYQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F FPY TPDQ ++ +++RD+ E PMDRL+ GDVG+GKTEVALRA F V +G
Sbjct: 609 RQFENDFPYSETPDQLRSIEEIKRDM-ESSRPMDRLLVGDVGYGKTEVALRAAFKAVESG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT +LA+QHFD +S+RFS YP I +G+LSRFQ+ + +E ++ +K G ++++V
Sbjct: 668 KQVAILVPTTILAQQHFDTMSDRFSGYP-IAIGMLSRFQTTKQVKETIEGLKDGSIDVVV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I + VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVGFKDLGLLVIDEEQRFGVKHKERIKELRSQVDVLTLTATPIPRTLNMSMM 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + I EL RGGQV+Y+ R+ +E+ +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTYVLEENSGTLRDGINRELRRGGQVYYLHNRVHDIEKVVAE 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q P ++ HGQ +QLE+ + +F QG +L+ T I+E+G+DI NANT+ V++
Sbjct: 847 IQALVPEANVGYIHGQMTEKQLEDILFEFIQGEFDVLVTTTIIETGIDIPNANTLFVENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+QLYQ+RGR+GR+ + A+AY Y +L++ +RL A+++ ELG GF++A +
Sbjct: 907 DHMGLSQLYQIRGRIGRSSRVAYAYFTYQQNKVLTELGEKRLEAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG D++ +ML +++ K + ++V + +I + ++
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDMYTQMLSDAI-KTKQGKKVTVKTDA-EIALGLDAF 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LPS+YI + +E + +D +M+ + L ++G+ +E L+ ++
Sbjct: 1025 LPSDYIEDQQQKIEFYKRLRQVENED--QIMEIQDDLIDRFGEYSVEVENLIHVTELKLK 1082
Query: 752 AADIGITKIYASGKMVGMKTNMNKK---VFKMMIDSMTSEVHRNSLTFEGDQIKAELLLE 808
A + I KI + + K+ + + ++++ R ++ E +++ +L+++
Sbjct: 1083 ADEAQIEKIEKRDNFLFISLKTAKRPDLTGENIFEALSVTKLRATVAEENGKMQIKLVIQ 1142
Query: 809 LPREQLLNWIFQCLAELYASL 829
P+ W+ Q L+E + L
Sbjct: 1143 -PKMTEKQWMVQ-LSEFVSEL 1161
>gi|298207099|ref|YP_003715278.1| transcription-repair coupling factor [Croceibacter atlanticus
HTCC2559]
gi|83849733|gb|EAP87601.1| transcription-repair coupling factor [Croceibacter atlanticus
HTCC2559]
Length = 1126
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 248/632 (39%), Positives = 373/632 (59%), Gaps = 22/632 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
+L GDYV H GIGKF G+ K DV+ I+ + Y D + + +Y
Sbjct: 433 NLTVGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLI---YGDRDILYLSIHSLHKITKY 489
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
N + + P+ + KL + AW++ K K K ++++ +L++LY R +K + P
Sbjct: 490 N-GKDGQAPK-VYKLG-SQAWKKLKQKTKSKVKEIAFNLIKLYAKRRLEKGFAFGPDTTM 546
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E + F YE TPDQ A DV++D+ E E PMDRL+CGDVGFGKTE+A+RA F V
Sbjct: 547 QLELESSFIYEDTPDQSSATEDVKKDM-ENERPMDRLVCGDVGFGKTEIAIRAAFKAVDN 605
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ VL PT +LA QH SER +P + V L+RF+S E+ E + ++ G ++II
Sbjct: 606 GKQVAVLVPTTILAFQHHKTFSERLKDFP-VTVEYLNRFRSAKERRETIADLEAGKVDII 664
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ V + +LGLL+VDEEQ+FGV K+K+ + K +VD LTL+ATPIPRTL +L
Sbjct: 665 IGTHQLVNKTVKFKDLGLLIVDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSL 724
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S I+TPPP R P++T++ FS+E + A++YE+ RGGQV++V RI+ ++E
Sbjct: 725 MAARDLSTITTPPPNRYPVETNVIRFSEESIRDAVQYEIQRGGQVYFVHNRIENIKEVAG 784
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P I I HGQ ++LE+ M F G +L+ T I+ESGLD+ NANTI + +
Sbjct: 785 MIQRVVPDAKIGIGHGQMEGKKLEQLMLSFMNGDFDVLVSTTIIESGLDVPNANTIFINN 844
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A Y P S ++D A +R+ ALE+ +LG GF +A
Sbjct: 845 ANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTDDARKRITALEQFSDLGSGFNIAM 904
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS---------VPYKS 681
KD+ IRG G + G +Q+G + +G D + ++L E++ ++ E V K
Sbjct: 905 KDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIEELKETEFKDLYDTKEEDRVFLKD 964
Query: 682 VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
ID +I+ P +YIN++ + + E +E+ L + + L ++G+ P E
Sbjct: 965 TTIDTDISLLFPDDYINNISERLNLYTELNSISEEK--ELEAYEKRLLDRFGELPQQAED 1022
Query: 742 LLKKLYVRRMAADIGITK-IYASGKMVGMKTN 772
LL + V+ +A +GI K I GKM+G N
Sbjct: 1023 LLNSVRVKWIATQVGIEKLILKQGKMIGYFIN 1054
>gi|310639514|ref|YP_003944272.1| transcription-repair coupling factor [Paenibacillus polymyxa SC2]
gi|386038728|ref|YP_005957682.1| transcription-repair-coupling factor TRCF; ATP-dependent helicase mfd
[Paenibacillus polymyxa M1]
gi|309244464|gb|ADO54031.1| transcription-repair coupling factor [Paenibacillus polymyxa SC2]
gi|343094766|emb|CCC82975.1| transcription-repair-coupling factor TRCF; ATP-dependent helicase mfd
[Paenibacillus polymyxa M1]
Length = 1175
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 234/560 (41%), Positives = 358/560 (63%), Gaps = 21/560 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADG-MAKLPVKQA 204
++ YS L+ GDYVVH+ GIGK++GI +V + +Y+ I YA G +P++Q
Sbjct: 482 RIKSYSELKVGDYVVHQNHGIGKYMGIGTLEV---GGIHKDYMHILYAGGDKLSVPIEQI 538
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
++ +Y + +E K P+ + KL W R K+K + ++Q + DL++LY R Q P
Sbjct: 539 D-LIQKY-VGSEDKEPK-IYKLG-GNEWTRVKSKVRSSVQDIADDLIKLYAER--QSAPG 592
Query: 265 YP---KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
+ +P EF FPY+ T DQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+
Sbjct: 593 FAFEKDSPEQQEFEDMFPYDETRDQVRAIEEIKKDM-EQSRPMDRLLCGDVGYGKTEVAI 651
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F GKQ VL PT +LA+QH++ ERFS YP + +LSRF+S+ E+ E
Sbjct: 652 RAAFKSAIEGKQVAVLVPTTILAQQHYETFRERFSGYP-FNIQVLSRFRSRKEQNETTKG 710
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
++ G ++I++GTH LL +V+ +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATP
Sbjct: 711 VRQGTVDIVIGTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATP 770
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL++++ G RD S+I TPP R P++T++ S+ V AI+ E+ RGGQV+Y+ R
Sbjct: 771 IPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIEREMARGGQVYYLYNR 830
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
++G++E + P + + HGQ +LE+T+ F G +L+ T+I+E+G+DI
Sbjct: 831 VQGIQEMAAEINALVPDAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIP 890
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
N NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E E
Sbjct: 891 NVNTLIVHDADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTE 950
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCV----ISV 677
LG GF++A +D+ IRG G + G +Q G + +VG DL+ +ML E ++K + S
Sbjct: 951 LGSGFKIAMRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINKRKVSVLGEEDQSN 1010
Query: 678 PYKSVQIDININPRLPSEYI 697
S ID++++ LP +YI
Sbjct: 1011 RNWSTSIDLSVDAYLPGDYI 1030
>gi|47096207|ref|ZP_00233806.1| transcription-repair coupling factor [Listeria monocytogenes str.
1/2a F6854]
gi|254913931|ref|ZP_05263943.1| transcription-repair coupling factor [Listeria monocytogenes J2818]
gi|386045852|ref|YP_005964184.1| transcription-repair coupling factor [Listeria monocytogenes J0161]
gi|386052491|ref|YP_005970049.1| transcription-repair coupling factor [Listeria monocytogenes Finland
1998]
gi|404412314|ref|YP_006697901.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC7179]
gi|47015455|gb|EAL06389.1| transcription-repair coupling factor [Listeria monocytogenes str.
1/2a F6854]
gi|293591949|gb|EFG00284.1| transcription-repair coupling factor [Listeria monocytogenes J2818]
gi|345532843|gb|AEO02284.1| transcription-repair coupling factor [Listeria monocytogenes J0161]
gi|346645142|gb|AEO37767.1| transcription-repair coupling factor [Listeria monocytogenes Finland
1998]
gi|404238013|emb|CBY59414.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC7179]
Length = 1179
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 264/699 (37%), Positives = 407/699 (58%), Gaps = 49/699 (7%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L+ GDYVVH GI ++VG++ D+ + V +Y+ + Y G KL PV Q
Sbjct: 494 RIQSYSELKVGDYVVHVNHGIARYVGMETLDI---NGVHKDYLLLVY-QGEDKLFIPVDQ 549
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L + + E K PR L+KL W+R K K + ++Q + DL++LY R +K
Sbjct: 550 LD--LVQKYVGAEGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ + + EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALR
Sbjct: 606 AFSADDEMQREFEEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALR 664
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +
Sbjct: 665 AAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGM 723
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G ++++VGTH LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPI
Sbjct: 724 KNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPI 783
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R+
Sbjct: 784 PRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRV 843
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + D + P +A AHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 844 ESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPN 903
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+ VQD + GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E EL
Sbjct: 904 VNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTEL 963
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ K E VP
Sbjct: 964 GSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP-- 1021
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+IDI + +P YI +EM + + L + ++G+ P +E
Sbjct: 1022 -VEIDIQADAYIPEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVE 1078
Query: 741 ILLKKLYVRRMAADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTS 787
L ++ A ++G IT +++ G++ ++ ++ F M+
Sbjct: 1079 YLFTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----- 1133
Query: 788 EVHRNSLTFEGDQIKAELLLELPREQLLNWIFQC--LAE 824
+ EG Q+K + + + + L W++Q LAE
Sbjct: 1134 -----GVGMEGTQLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|89892935|ref|YP_516422.1| hypothetical protein DSY0189 [Desulfitobacterium hafniense Y51]
gi|89332383|dbj|BAE81978.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 1178
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 251/614 (40%), Positives = 380/614 (61%), Gaps = 23/614 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--PVKQASRM 207
L+ GD+VVH GIG+F+GI+ V+KD Y ++YA G KL P+ Q +
Sbjct: 504 LKPGDFVVHVHHGIGQFMGIERIAVGGVEKD------YFSVKYA-GQDKLYVPLDQLN-F 555
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-P 266
L +Y + P+ L KL + W++ K K K AI++M DL++LY R K + P
Sbjct: 556 LQKYLGSDAETLPK-LYKLGGSE-WKKVKAKAKSAIKEMAFDLVKLYAQREATKGYAFSP 613
Query: 267 KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
N EF +FPY+ TPDQ + ++V++D+ R+ PMDRL+CGDVG+GKTEVALRA F
Sbjct: 614 DNVWQQEFEEKFPYQETPDQMQCIVEVKQDMM-RQRPMDRLLCGDVGYGKTEVALRAAFK 672
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
V KQ VL PT +LA+QHF+ ERF YP + + +LSRF+S E++ L +K G
Sbjct: 673 AVMDSKQVAVLVPTTILAQQHFNTFQERFMGYP-VSIQMLSRFRSAKEQKLILQGLKEGS 731
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
++I+VGTH L+ + + +LGLL+VDEEQRFGV KEK+ + K +VDVLTLSATPIPRTL
Sbjct: 732 IDIVVGTHKLVSDSIKFKDLGLLIVDEEQRFGVAHKEKLKTLKANVDVLTLSATPIPRTL 791
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
+++L G RD S+I TPP +R P++T+++ F + V AI+ E+ RGGQVF+V R++ +E
Sbjct: 792 HMSLVGVRDLSIIETPPEDRFPVQTYVAEFRPDVVREAIRREIQRGGQVFFVHNRVEDME 851
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
+ + FL Q P IAHGQ ++LE+ M F + +L+CT I+E+GLD+ N NT+
Sbjct: 852 QVVHFLSQLVPEARYGIAHGQMSEKELEQEMLAFLEHESDVLVCTTIIETGLDMPNVNTL 911
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
I+ + + GL QLYQLRGRVGR+++ A++Y Y + +L++ A +RLAA+ E E G G
Sbjct: 912 IIDEADRLGLGQLYQLRGRVGRSNRRAYSYFLYKPQKVLTEVAEKRLAAIREFTEFGSGL 971
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 686
++A +D+ IRG G + G QQ G + +G +L+ +ML E++ ++ V S I++
Sbjct: 972 KIAMRDLEIRGAGNLIGAQQHGHLAALGFELYSQMLKEAVQELKGEQVEEKIETS--IEV 1029
Query: 687 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
++ LP YI + + ++ +M + L ++G P +E LLK +
Sbjct: 1030 QVDAYLPDIYIGERQLKAALYQRMVAIDNEEDLSMM--IDELIDRFGTPPREVENLLKIV 1087
Query: 747 YVRRMAADIGITKI 760
++ MA+ + I +I
Sbjct: 1088 RIKWMASGMKIEQI 1101
>gi|16802260|ref|NP_463745.1| transcription-repair coupling factor [Listeria monocytogenes EGD-e]
gi|284803047|ref|YP_003414912.1| transcription-repair coupling factor [Listeria monocytogenes 08-5578]
gi|284996188|ref|YP_003417956.1| transcription-repair coupling factor [Listeria monocytogenes 08-5923]
gi|386049143|ref|YP_005967134.1| transcription-repair coupling factor [Listeria monocytogenes FSL
R2-561]
gi|405757201|ref|YP_006686477.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2479]
gi|16409579|emb|CAD00741.1| transcription-repair coupling factor [Listeria monocytogenes EGD-e]
gi|284058609|gb|ADB69550.1| transcription-repair coupling factor [Listeria monocytogenes 08-5578]
gi|284061655|gb|ADB72594.1| transcription-repair coupling factor [Listeria monocytogenes 08-5923]
gi|346422989|gb|AEO24514.1| transcription-repair coupling factor [Listeria monocytogenes FSL
R2-561]
gi|404235083|emb|CBY56485.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2479]
Length = 1179
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 264/699 (37%), Positives = 407/699 (58%), Gaps = 49/699 (7%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L+ GDYVVH GI ++VG++ D+ + V +Y+ + Y G KL PV Q
Sbjct: 494 RIQSYSELKVGDYVVHVNHGIARYVGMETLDI---NGVHKDYLLLVY-QGEDKLFIPVDQ 549
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L + + E K PR L+KL W+R K K + ++Q + DL++LY R +K
Sbjct: 550 LD--LVQKYVGAEGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ + + EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALR
Sbjct: 606 AFSADDEMQREFEEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALR 664
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +
Sbjct: 665 AAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGM 723
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G ++++VGTH LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPI
Sbjct: 724 KNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPI 783
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R+
Sbjct: 784 PRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRV 843
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + D + P +A AHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 844 ESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPN 903
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+ VQD + GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E EL
Sbjct: 904 VNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTEL 963
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ K E VP
Sbjct: 964 GSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP-- 1021
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+IDI + +P YI +EM + + L + ++G+ P +E
Sbjct: 1022 -VEIDIQADAYIPEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVE 1078
Query: 741 ILLKKLYVRRMAADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTS 787
L ++ A ++G IT +++ G++ ++ ++ F M+
Sbjct: 1079 YLFTMTELKVRALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----- 1133
Query: 788 EVHRNSLTFEGDQIKAELLLELPREQLLNWIFQC--LAE 824
+ EG Q+K + + + + L W++Q LAE
Sbjct: 1134 -----GVGMEGTQLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|374711149|ref|ZP_09715583.1| transcription-repair coupling factor [Sporolactobacillus inulinus
CASD]
Length = 1184
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 245/619 (39%), Positives = 377/619 (60%), Gaps = 21/619 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYRY 211
L GDYVVH GIG++ GI + + + + +Y+ I Y G KL P++ + + +Y
Sbjct: 503 LNVGDYVVHVDHGIGRYAGI--ETLEVNGIHKDYLEIIYK-GNDKLYVPIEHIDQ-VQKY 558
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E K P+ S + W++ K K + +IQ + DL++LY R K + K+ A
Sbjct: 559 -VSSEGKEPKIYS--LGGSEWKKVKNKARSSIQDIADDLIKLYAKREASKGYAFSKDGAE 615
Query: 272 A-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F A FPY+ T DQ +A +++RD+ E+E PMDRL+CGDVG+GKTEVALRA F ++
Sbjct: 616 QHDFDAAFPYQETVDQLQAIEEIKRDM-EKEKPMDRLLCGDVGYGKTEVALRAAFKAIAD 674
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QHF+ SERF +P + +GLLSRF+S+ E+ E L +K+G ++++
Sbjct: 675 GKQVAFLVPTTILAQQHFETASERFEDFP-VTIGLLSRFRSRKEQMETLKGLKNGTVDLV 733
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH LL V Y +LGLL+VDEEQRFGV KEKI K ++DVLTL+ATPIPRTL++++
Sbjct: 734 IGTHRLLSKDVQYKDLGLLIVDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMSM 793
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+I TPP R P++T + ++ + AI+ E+ RGGQV+++ R++ ++ +
Sbjct: 794 LGVRDLSIIETPPENRFPVQTFVMEYNAALIREAIEREMARGGQVYFLYNRVETIQRMAE 853
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+ P + AHGQ +LE M F G +L+ T I+E+G+DI N NT+IV D
Sbjct: 854 MISNLVPDASVTFAHGQMKESELESAMIDFLDGNADVLVSTTIIETGVDIPNVNTLIVYD 913
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR+++ A+AY Y ++++ A +RL A++E ELG GF++A
Sbjct: 914 ADRMGLSQLYQLRGRVGRSNRVAYAYFTYQRDKVMNEVAEKRLQAIKEFTELGSGFKIAM 973
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPYKSVQIDI 686
+D+ IRG G + G QQ G + +VG DL+ +ML +++ SK P K V I++
Sbjct: 974 RDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLQDAIAERSSKDKTQTTAPRPPK-VTIEM 1032
Query: 687 NINPRLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ + +P Y+N ++M + A QDI + + + ++G P + L K
Sbjct: 1033 DTDAYIPDAYLNDSLQKIDMYKRFKSAESLQDI---AELRDEMIDRFGDYPREVADLFKV 1089
Query: 746 LYVRRMAADIGITKIYASG 764
+R A + I +I G
Sbjct: 1090 AEMRVRANTLMIEEIKQQG 1108
>gi|46906446|ref|YP_012835.1| transcription-repair coupling factor [Listeria monocytogenes serotype
4b str. F2365]
gi|226222843|ref|YP_002756950.1| transcription-repair coupling factor [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|254825872|ref|ZP_05230873.1| transcription-repair coupling factor [Listeria monocytogenes FSL
J1-194]
gi|254854444|ref|ZP_05243792.1| transcription-repair coupling factor [Listeria monocytogenes FSL
R2-503]
gi|254933054|ref|ZP_05266413.1| transcription-repair coupling factor [Listeria monocytogenes HPB2262]
gi|300766347|ref|ZP_07076306.1| transcription-repair coupling factor [Listeria monocytogenes FSL
N1-017]
gi|386730979|ref|YP_006204475.1| transcription-repair coupling factor [Listeria monocytogenes
07PF0776]
gi|404279764|ref|YP_006680662.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2755]
gi|404285581|ref|YP_006692167.1| transcription-repair coupling factor [Listeria monocytogenes serotype
7 str. SLCC2482]
gi|405748556|ref|YP_006672022.1| transcription-repair coupling factor [Listeria monocytogenes ATCC
19117]
gi|405751430|ref|YP_006674895.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2378]
gi|406702986|ref|YP_006753340.1| transcription-repair coupling factor [Listeria monocytogenes L312]
gi|424713078|ref|YP_007013793.1| Transcription-repair-coupling factor [Listeria monocytogenes serotype
4b str. LL195]
gi|424821943|ref|ZP_18246956.1| Transcription-repair-coupling factor [Listeria monocytogenes str.
Scott A]
gi|46879710|gb|AAT03012.1| transcription-repair coupling factor [Listeria monocytogenes serotype
4b str. F2365]
gi|225875305|emb|CAS04002.1| transcription-repair coupling factor [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|258607844|gb|EEW20452.1| transcription-repair coupling factor [Listeria monocytogenes FSL
R2-503]
gi|293584612|gb|EFF96644.1| transcription-repair coupling factor [Listeria monocytogenes HPB2262]
gi|293595111|gb|EFG02872.1| transcription-repair coupling factor [Listeria monocytogenes FSL
J1-194]
gi|300512946|gb|EFK40034.1| transcription-repair coupling factor [Listeria monocytogenes FSL
N1-017]
gi|332310623|gb|EGJ23718.1| Transcription-repair-coupling factor [Listeria monocytogenes str.
Scott A]
gi|384389737|gb|AFH78807.1| transcription-repair coupling factor [Listeria monocytogenes
07PF0776]
gi|404217756|emb|CBY69120.1| transcription-repair coupling factor [Listeria monocytogenes ATCC
19117]
gi|404220630|emb|CBY71993.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2378]
gi|404226399|emb|CBY47804.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2755]
gi|404244510|emb|CBY02735.1| transcription-repair coupling factor [Listeria monocytogenes serotype
7 str. SLCC2482]
gi|406360016|emb|CBY66289.1| transcription-repair coupling factor [Listeria monocytogenes L312]
gi|424012262|emb|CCO62802.1| Transcription-repair-coupling factor [Listeria monocytogenes serotype
4b str. LL195]
Length = 1179
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 264/699 (37%), Positives = 407/699 (58%), Gaps = 49/699 (7%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L+ GDYVVH GI ++VG++ D+ + V +Y+ + Y G KL PV Q
Sbjct: 494 RIQSYSELKVGDYVVHVNHGIARYVGMETLDI---NGVHKDYLLLVY-QGEDKLFIPVDQ 549
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L + + E K PR L+KL W+R K K + ++Q + DL++LY R +K
Sbjct: 550 LD--LVQKYVGAEGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ + + EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALR
Sbjct: 606 AFSADDEMQREFEEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALR 664
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +
Sbjct: 665 AAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGM 723
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G ++++VGTH LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPI
Sbjct: 724 KNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPI 783
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R+
Sbjct: 784 PRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRV 843
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + D + P +A AHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 844 ESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPN 903
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+ VQD + GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E EL
Sbjct: 904 VNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTEL 963
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ K E VP
Sbjct: 964 GSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP-- 1021
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+IDI + +P YI +EM + + L + ++G+ P +E
Sbjct: 1022 -VEIDIQADAYIPEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVE 1078
Query: 741 ILLKKLYVRRMAADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTS 787
L ++ A ++G IT +++ G++ ++ ++ F M+
Sbjct: 1079 YLFTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----- 1133
Query: 788 EVHRNSLTFEGDQIKAELLLELPREQLLNWIFQC--LAE 824
+ EG Q+K + + + + L W++Q LAE
Sbjct: 1134 -----GVGMEGTQLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|404409447|ref|YP_006695035.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC5850]
gi|404229273|emb|CBY50677.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC5850]
Length = 1179
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 264/699 (37%), Positives = 407/699 (58%), Gaps = 49/699 (7%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L+ GDYVVH GI ++VG++ D+ + V +Y+ + Y G KL PV Q
Sbjct: 494 RIQSYSELKVGDYVVHVNHGIARYVGMETLDI---NGVHKDYLLLVY-QGEDKLFIPVDQ 549
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L + + E K PR L+KL W+R K K + ++Q + DL++LY R +K
Sbjct: 550 LD--LVQKYVGAEGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ + + EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALR
Sbjct: 606 AFSADDEMQREFEEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALR 664
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +
Sbjct: 665 AAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGM 723
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G ++++VGTH LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPI
Sbjct: 724 KNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPI 783
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R+
Sbjct: 784 PRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRV 843
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + D + P +A AHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 844 ESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPN 903
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+ VQD + GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E EL
Sbjct: 904 VNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTEL 963
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ K E VP
Sbjct: 964 GSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP-- 1021
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+IDI + +P YI +EM + + L + ++G+ P +E
Sbjct: 1022 -VEIDIQADAYIPEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVE 1078
Query: 741 ILLKKLYVRRMAADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTS 787
L ++ A ++G IT +++ G++ ++ ++ F M+
Sbjct: 1079 YLFTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----- 1133
Query: 788 EVHRNSLTFEGDQIKAELLLELPREQLLNWIFQC--LAE 824
+ EG Q+K + + + + L W++Q LAE
Sbjct: 1134 -----GVGMEGTQLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|255520464|ref|ZP_05387701.1| transcription-repair coupling factor [Listeria monocytogenes FSL
J1-175]
gi|405754296|ref|YP_006677760.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2540]
gi|404223496|emb|CBY74858.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2540]
Length = 1179
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 264/699 (37%), Positives = 407/699 (58%), Gaps = 49/699 (7%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L+ GDYVVH GI ++VG++ D+ + V +Y+ + Y G KL PV Q
Sbjct: 494 RIQSYSELKVGDYVVHVNHGIARYVGMETLDI---NGVHKDYLLLVY-QGEDKLFIPVDQ 549
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L + + E K PR L+KL W+R K K + ++Q + DL++LY R +K
Sbjct: 550 LD--LVQKYVGAEGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ + + EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALR
Sbjct: 606 AFSADDEMQREFEEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALR 664
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +
Sbjct: 665 AAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGM 723
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G ++++VGTH LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPI
Sbjct: 724 KNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPI 783
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R+
Sbjct: 784 PRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRV 843
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + D + P +A AHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 844 ESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPN 903
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+ VQD + GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E EL
Sbjct: 904 VNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTEL 963
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ K E VP
Sbjct: 964 GSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIESKKPKEEQKQIVP-- 1021
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+IDI + +P YI +EM + + L + ++G+ P +E
Sbjct: 1022 -VEIDIQADAYIPEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVE 1078
Query: 741 ILLKKLYVRRMAADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTS 787
L ++ A ++G IT +++ G++ ++ ++ F M+
Sbjct: 1079 YLFTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----- 1133
Query: 788 EVHRNSLTFEGDQIKAELLLELPREQLLNWIFQC--LAE 824
+ EG Q+K + + + + L W++Q LAE
Sbjct: 1134 -----GVGMEGTQLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|404282645|ref|YP_006683542.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2372]
gi|404232147|emb|CBY53550.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2372]
Length = 1179
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 264/699 (37%), Positives = 407/699 (58%), Gaps = 49/699 (7%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L+ GDYVVH GI ++VG++ D+ + V +Y+ + Y G KL PV Q
Sbjct: 494 RIQSYSELKVGDYVVHVNHGIARYVGMETLDI---NGVHKDYLLLVY-QGEDKLFIPVDQ 549
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L + + E K PR L+KL W+R K K + ++Q + DL++LY R +K
Sbjct: 550 LD--LVQKYVGAEGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ + + EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALR
Sbjct: 606 AFSADDEMQREFEEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALR 664
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +
Sbjct: 665 AAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGM 723
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G ++++VGTH LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPI
Sbjct: 724 KNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPI 783
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R+
Sbjct: 784 PRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRV 843
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + D + P +A AHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 844 ESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPN 903
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+ VQD + GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E EL
Sbjct: 904 VNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTEL 963
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ K E VP
Sbjct: 964 GSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP-- 1021
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+IDI + +P YI +EM + + L + ++G+ P +E
Sbjct: 1022 -VEIDIQADAYIPEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVE 1078
Query: 741 ILLKKLYVRRMAADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTS 787
L ++ A ++G IT +++ G++ ++ ++ F M+
Sbjct: 1079 YLFTMTELKVRALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----- 1133
Query: 788 EVHRNSLTFEGDQIKAELLLELPREQLLNWIFQC--LAE 824
+ EG Q+K + + + + L W++Q LAE
Sbjct: 1134 -----GVGMEGTQLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|311743167|ref|ZP_07716975.1| transcription-repair coupling factor [Aeromicrobium marinum DSM
15272]
gi|311313847|gb|EFQ83756.1| transcription-repair coupling factor [Aeromicrobium marinum DSM
15272]
Length = 1169
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 238/626 (38%), Positives = 374/626 (59%), Gaps = 19/626 (3%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRM 207
+VDP L GD+VVH++ G+G++V + V + + EY+ IEY P A R+
Sbjct: 493 QVDPLELSPGDHVVHEQHGVGRYVELVNRVVQGAAR--EYLVIEYGSSKRGQP---ADRL 547
Query: 208 LYRYNLPNETKR-----PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
+ ++ R TL +L + W RK K + A++++ +L++LY R +
Sbjct: 548 FLPMDQLDQISRYVGGESPTLDRLGGSD-WTNRKNKARKAVRQIAGELIKLYAARQSTQG 606
Query: 263 PPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
+ P P AE F Y TPDQ +V+RD+ ER PMDRL+CGDVG+GKTE+A+
Sbjct: 607 HAFGPDTPWQAELEDAFAYVETPDQLSTIEEVKRDM-ERVVPMDRLVCGDVGYGKTEIAV 665
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F + GKQ ++L PT +L +QH+ +ERF ++P + + LSRFQ+++E + L+
Sbjct: 666 RAAFKAIQDGKQVILLVPTTLLVQQHYATFAERFGQFP-VSIRPLSRFQTESESKATLEA 724
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+ G +++++GTH LL V +LGL++VDEEQRFGV+ KE + + +VDVL++SATP
Sbjct: 725 LAEGSVDLVIGTHRLLQPGVRIKDLGLVIVDEEQRFGVEHKEALKHLRAAVDVLSMSATP 784
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL +A+TG R+ S I+TPP ER P+ + + + +V++AI+ EL R GQ FY+ R
Sbjct: 785 IPRTLEMAVTGIREMSTIATPPEERHPVLSFVGPYEDRQVVAAIRRELLREGQAFYIHNR 844
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
++ +++ + L+Q P V +A AHGQ QLE+ M F + +L+CT IVESGLD+
Sbjct: 845 VQSIDKAVARLRQLVPEVRVAAAHGQMSEAQLEQVMLDFWEKRYDVLVCTTIVESGLDVS 904
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANT+I++ GL+QL+QLRGRVGR + A+AY YP L++ A +RLA + + E
Sbjct: 905 NANTMIIERSDTLGLSQLHQLRGRVGRGSERAYAYFLYPPDKPLTETAHDRLATIAQHSE 964
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS 681
LG G +A KD+ IRG G + G +Q+G + +VG DL+ ++ E++++ + P +
Sbjct: 965 LGGGMAVAMKDLEIRGAGNLLGGEQSGHIADVGFDLYVRLVGEAVAEFRGE---AEPERE 1021
Query: 682 VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
V+I++ I LP Y+ +EM D +++ L +YG+ P +E
Sbjct: 1022 VRIELPIEAHLPLTYLPSERLRLEMYKRLAGVRTPD--DVVELRAELVDRYGEPPEVVET 1079
Query: 742 LLKKLYVRRMAADIGITKIYASGKMV 767
LL+ +R D G+T++ A+G V
Sbjct: 1080 LLQVALLRIKVRDAGLTEVTAAGSSV 1105
>gi|386774080|ref|ZP_10096458.1| transcription-repair coupling factor Mfd [Brachybacterium
paraconglomeratum LC44]
Length = 1227
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 245/629 (38%), Positives = 377/629 (59%), Gaps = 22/629 (3%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGIKFDV----QKDSTVPIEYVFIEYADGMAKLPVKQ- 203
VDP LR GD+VVH G+G+FV + K +T EY+ IEYA P +
Sbjct: 525 VDPLQLRPGDHVVHAHHGVGRFVEMTSRTVGTGAKRTTR--EYLVIEYAASKKGQPGDRL 582
Query: 204 --ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQK 261
S L + + P +++++ W + K+K + AI+++ +L+ LY R Q
Sbjct: 583 YVPSDQLDQVTKYVGGEEP-SVNRMGGAD-WAKTKSKARKAIREIADELVRLYSAR--QS 638
Query: 262 RPPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTE 318
P + P P E F + TPDQ DV++D+ E+ PMDRLI GDVG+GKTE
Sbjct: 639 APGHAFGPDTPWQRELEDSFEFVETPDQLSTIEDVKKDM-EKPVPMDRLILGDVGYGKTE 697
Query: 319 VALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378
+A+RA F V GKQ VLAPT +LA+QH D SER++ +P + V LSRFQS A+ E
Sbjct: 698 IAVRAAFKAVQDGKQVAVLAPTTLLAQQHLDTFSERYTGFP-VTVKGLSRFQSAADSEAT 756
Query: 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLS 438
++ ++ G ++I++GTH LL V + +LGLL++DEEQRFGV+ KE + + + +VDVL++S
Sbjct: 757 VEGLREGSVDIVIGTHRLLTGNVRFKDLGLLIIDEEQRFGVEHKETLKALRTNVDVLSMS 816
Query: 439 ATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYV 498
ATPIPRTL +A+TG R+ S+++TPP ER P+ T++ A ++ +AI+ EL R GQVFY+
Sbjct: 817 ATPIPRTLEMAVTGIREMSILATPPEERHPVLTYVGADEDRQIAAAIRRELLREGQVFYI 876
Query: 499 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558
R++ ++ L++ P +A+AHG+ QLE + F + +L+CT IVE+GL
Sbjct: 877 HNRVEDIDRVAAHLRELVPDARVAVAHGKMNEHQLERVIVDFWERDFDVLVCTTIVETGL 936
Query: 559 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 618
DI NANT+IV++ +FGL+QL+QLRGRVGR+ + A+AY Y L++ A +RL L
Sbjct: 937 DIANANTLIVENADRFGLSQLHQLRGRVGRSSERAYAYFLYNAGKPLTETAHDRLTTLAT 996
Query: 619 CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP 678
+LG G Q+A KD+ IRG G + G +Q+G + VG DL+ M+ E+++ S P
Sbjct: 997 NTDLGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVAAFRGEA--SAP 1054
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
K +++++ ++ +P +YI +E A+ +A +++ + Q L +YG P
Sbjct: 1055 EKEIRVELPLDAHVPHDYIGSERLRLEAY--AKLSAVREVSEIEQVRAELADRYGPLPAP 1112
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKMV 767
+E+LL R A G+ ++ A GKM+
Sbjct: 1113 VEVLLDVARFRIDARAAGVDEVQAQGKMI 1141
>gi|374813985|ref|ZP_09717722.1| transcription-repair coupling factor [Treponema primitia ZAS-1]
Length = 1148
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 244/647 (37%), Positives = 397/647 (61%), Gaps = 26/647 (4%)
Query: 146 SYKVDPY-SLRSGDYVVHKKVGIGKFVGIK----FDVQKDSTVPIEYVFIEY-ADGMAKL 199
S +D + L GD+VVH GIG F GI+ ++D Y+ +EY + + +
Sbjct: 475 SAAIDTFVELNPGDFVVHINYGIGLFKGIERIKALGHERD------YIKLEYLGEEIVFV 528
Query: 200 PVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK 259
P++Q + ++ RY + NE PR + KL + +WE RK + K +++++ L++LY R
Sbjct: 529 PIEQVN-LVQRY-IGNEGSPPR-MDKLG-SKSWENRKGRVKQSVEEIAEKLIDLYSKRRA 584
Query: 260 QKRPPYPKNPAIAE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTE 318
+ +P + F A FP++ T DQ + +++ D+ E+ PMDRLICGDVG+GKTE
Sbjct: 585 SRGFAFPADTEWQTMFEASFPFDETEDQLRCVEEIKDDM-EKPNPMDRLICGDVGYGKTE 643
Query: 319 VALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378
VA+RA F V GKQ LAPT +LA+QH++ ERFS++P +++G+LSRF ++ +
Sbjct: 644 VAVRACFKAVMGGKQVAFLAPTTILAEQHYENFQERFSQFP-VRMGMLSRFVDRSVIRQT 702
Query: 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLS 438
L+ +K G ++I+VGTH ++ VV+ +LGL+V+DEEQRFGVK KE++ K +VD LTLS
Sbjct: 703 LEAVKKGEVDILVGTHRIIQKDVVFKDLGLMVIDEEQRFGVKDKERLKEMKHNVDCLTLS 762
Query: 439 ATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYV 498
ATPIPRTL+++L RD SL++TPP R PI+T + F+++++ +AI+ E++RGGQVF++
Sbjct: 763 ATPIPRTLHMSLLKIRDMSLLATPPNNRHPIETVIDEFNEDRLAAAIRTEVERGGQVFFL 822
Query: 499 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558
R++ L E ++ P + + AHGQ + +LE+ M +F G +L+ T I+E+G+
Sbjct: 823 HNRVESLNETRLRIEHLVPEMLVETAHGQMNAHELEDVMHRFIHGGFHVLVSTTIIENGI 882
Query: 559 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 618
DI N NTII+ +G++QLYQLRGRVGR+D+ A+AYLFYP L++ A++RL + +
Sbjct: 883 DIPNVNTIIIDRADMYGVSQLYQLRGRVGRSDRVAYAYLFYPKDRALTELAMKRLQVISD 942
Query: 619 CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP 678
ELG GF++A KDM IRG G + G +Q+GD+ +VG DL+ +L E++ ++ E+
Sbjct: 943 FTELGSGFKIAMKDMEIRGAGNLLGREQSGDIYSVGFDLYLRLLDEAVHRL-ENSQYEAE 1001
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+++ +++ +P+ YI+ + ME+ + ++ + + R +G P
Sbjct: 1002 TETL-LELEYTGFIPNAYIDGAQEKMEVYKKIASVKTREELENLLGELTDR--FGPPPDE 1058
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSM 785
LL +R + DI + + G V ++ KV K+ ID +
Sbjct: 1059 AASLLALAEIRIICRDISVFSLKEKGGSVRVEFG---KVSKVKIDRL 1102
>gi|381186662|ref|ZP_09894232.1| transcription-repair coupling factor [Flavobacterium frigoris PS1]
gi|379651506|gb|EIA10071.1| transcription-repair coupling factor [Flavobacterium frigoris PS1]
Length = 1102
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 243/630 (38%), Positives = 366/630 (58%), Gaps = 24/630 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
+L GDYV H GIG+F G+ K V+ + I+ V YAD + + +Y
Sbjct: 415 TLSVGDYVTHIDHGIGRFGGLQKIQVENRTQEAIKLV---YADNDIVYVSIHSLHKISKY 471
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
+ P + KL + AW+ K K K ++ + +L++LY R K + P +
Sbjct: 472 --AGKDGAPPKIYKLG-SNAWKVLKQKTKARVKHVAFNLIQLYAKRRLDKGFQFAPDSYL 528
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E + F YE TPDQ K+ +V+ D+ E + PMDRL+CGDVGFGKTEVA+RA F V
Sbjct: 529 QNELESSFIYEDTPDQTKSTQEVKADM-ESDRPMDRLVCGDVGFGKTEVAIRAAFKAVDN 587
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
KQ +L PT +LA QH+ +ER P + +G L+RF+S +K E L ++ G L+I+
Sbjct: 588 SKQVAILVPTTILAYQHYRTFTERLKDMP-VSIGYLNRFRSAKQKSETLKLLAEGKLDIV 646
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ VV+ +LGLL+VDEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L
Sbjct: 647 IGTHQLVNKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPIPRTLQFSL 706
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S+I+TPPP R PI+T++ FS+E + AI YE+ R GQVF++ RI+ ++E
Sbjct: 707 MAARDLSVITTPPPNRYPIETNVVGFSEELIRDAISYEIQRNGQVFFINNRIENIKEVAG 766
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P + I HGQ ++LEE M F G +L+ T I+ESGLD+ NANTI + +
Sbjct: 767 MIQRLVPNARVGIGHGQMEGKKLEELMLAFMNGEFDVLVATTIIESGLDVPNANTIFINN 826
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A Y P S ++D A +R+ ALE+ ELG GF +A
Sbjct: 827 ANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSAMTDDARKRIQALEQFSELGSGFNIAM 886
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV-----------PY 679
KD+ IRG G + G +Q+G + +G D + ++L E++ ++ E+ +
Sbjct: 887 KDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIDELKENEFKDLYPVENDLETKEYV 946
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
K +QID + EYIN++ + + NE +D L Q + L ++G P
Sbjct: 947 KDLQIDTDFELLFSDEYINNVSERLSLYNELGAVKNEDELQLFQ--KKLIDRFGPMPPRA 1004
Query: 740 EILLKKLYVRRMAADIGITK-IYASGKMVG 768
L+ + ++ +A+ +GI K + GKMVG
Sbjct: 1005 IALMNSIRIKWVASRVGIEKLVMKQGKMVG 1034
>gi|118578938|ref|YP_900188.1| transcription-repair coupling factor [Pelobacter propionicus DSM
2379]
gi|118501648|gb|ABK98130.1| transcription-repair coupling factor [Pelobacter propionicus DSM
2379]
Length = 1177
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 249/613 (40%), Positives = 375/613 (61%), Gaps = 25/613 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GD++VH GIG + G++ S V +++ +EY G LPV + + ++ RY
Sbjct: 507 LKPGDHMVHVDHGIGLYRGLQH--ISVSGVGGDFLLLEYNGGDKLYLPVDRLA-LVQRYV 563
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAI 271
P E P +L KL + WE+ K K + AI+++ +L+E+Y R + + P +
Sbjct: 564 GP-EGSSP-SLDKLGGVS-WEKSKGKARKAIEELAGELLEIYAKRQICEGFSFSPPDEMY 620
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A F +E TPDQ A DV D+ + PMDRL+CGDVG+GKTEVALR F G
Sbjct: 621 REFEASFAWEETPDQLSAINDVLADM-QHSRPMDRLVCGDVGYGKTEVALRGAFKAALDG 679
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT +LA+QHF+ ER +YP ++V LSRF++ E++ L+ +K G ++I++
Sbjct: 680 KQVGVLVPTTILAQQHFETFHERLKEYP-VRVEALSRFRTPKEQKAILERLKKGEIDIVI 738
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLL++DEEQRFGVK KE++ +F+ VDV+TL+ATPIPRTLY+++
Sbjct: 739 GTHRLLQKDVAFKDLGLLIIDEEQRFGVKDKERLKAFRAVVDVMTLTATPIPRTLYMSMM 798
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP +RL +KT ++ FS+E V AI EL RGGQVF+V R++ + + +
Sbjct: 799 GIRDLSIIDTPPVDRLAVKTIVARFSEELVREAIMRELRRGGQVFFVHNRVQTIAKRAEL 858
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+ P IA+ HGQ ++LE+ M F G +LICT I+ESGLDI NANT+IV
Sbjct: 859 IAALVPEAKIAVGHGQMGEQELEKVMLGFMHGETNLLICTTIIESGLDIPNANTLIVDHA 918
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+FGL+QLYQLRGRVGR+ + +AYL P + L+ A ERL L++ ELG GF++A
Sbjct: 919 DRFGLSQLYQLRGRVGRSSQRGYAYLLIPGEGSLTSDARERLKILQDISELGAGFRIATH 978
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
DM IRG G + G +Q+G V +G +L+ +ML E++ ++ +I +I++ +
Sbjct: 979 DMEIRGAGDMLGSRQSGTVIEIGFELYNQMLEETICRMRGEEMIE--QVEPEINLKVPAF 1036
Query: 692 LPSEYINHLENPMEMVNEAEKA-AEQDIWCLMQFTESLRRQYGKEPYS---------MEI 741
+P Y+ + + + +A +E+D+ + + ++GK P + + I
Sbjct: 1037 IPETYVRDTGQRLVIYKKLTQAESEEDV---LDVQNEVSDRFGKYPLATAYLFETMKLRI 1093
Query: 742 LLKKLYVRRMAAD 754
+LKKL VR++ D
Sbjct: 1094 MLKKLLVRQIDYD 1106
>gi|217965700|ref|YP_002351378.1| transcription-repair coupling factor [Listeria monocytogenes HCC23]
gi|386006943|ref|YP_005925221.1| transcription-repair coupling factor [Listeria monocytogenes L99]
gi|386025523|ref|YP_005946299.1| transcription-repair coupling factor [Listeria monocytogenes M7]
gi|217334970|gb|ACK40764.1| transcription-repair coupling factor [Listeria monocytogenes HCC23]
gi|307569753|emb|CAR82932.1| transcription-repair coupling factor [Listeria monocytogenes L99]
gi|336022104|gb|AEH91241.1| transcription-repair coupling factor (superfamily II helicase)
[Listeria monocytogenes M7]
Length = 1179
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 264/699 (37%), Positives = 407/699 (58%), Gaps = 49/699 (7%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L+ GDYVVH GI ++VG++ D+ + V +Y+ + Y G KL PV Q
Sbjct: 494 RIQSYSELKVGDYVVHVNHGIARYVGMETLDI---NGVHKDYLLLVY-QGEDKLFIPVDQ 549
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L + + E K PR L+KL W+R K K + ++Q + DL++LY R +K
Sbjct: 550 LD--LVQKYVGAEGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ + + EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALR
Sbjct: 606 AFSADDEMQREFEEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALR 664
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +
Sbjct: 665 AAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGM 723
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G ++++VGTH LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPI
Sbjct: 724 KNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPI 783
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R+
Sbjct: 784 PRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRV 843
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + D + P +A AHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 844 ESITQKADEISAMVPDARVATAHGQMGESELEAVILSFLEGEFDVLVTTTIIETGVDIPN 903
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+ VQD + GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E EL
Sbjct: 904 VNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTEL 963
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ K E VP
Sbjct: 964 GSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP-- 1021
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+IDI + +P YI +EM + + L + ++G+ P +E
Sbjct: 1022 -VEIDIQADAYIPEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVE 1078
Query: 741 ILLKKLYVRRMAADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTS 787
L ++ A ++G IT +++ G++ ++ ++ F M+
Sbjct: 1079 YLFTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----- 1133
Query: 788 EVHRNSLTFEGDQIKAELLLELPREQLLNWIFQC--LAE 824
+ EG Q+K + + + + L W++Q LAE
Sbjct: 1134 -----GVGMEGTQLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|4090863|gb|AAC98900.1| transcription-repair coupling factor [Listeria monocytogenes]
Length = 1190
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 264/699 (37%), Positives = 407/699 (58%), Gaps = 49/699 (7%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L+ GDYVVH GI ++VG++ D+ + V +Y+ + Y G KL PV Q
Sbjct: 505 RIQSYSELKVGDYVVHVNHGIARYVGMETLDI---NGVHKDYLLLVY-QGEDKLFIPVDQ 560
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L + + E K PR L+KL W+R K K + ++Q + DL++LY R +K
Sbjct: 561 LD--LVQKYVGAEGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 616
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ + + EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALR
Sbjct: 617 AFSADDEMQREFEEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALR 675
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +
Sbjct: 676 AAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGM 734
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G ++++VGTH LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPI
Sbjct: 735 KNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPI 794
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R+
Sbjct: 795 PRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRV 854
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + D + P +A AHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 855 ESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPN 914
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+ VQD + GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E EL
Sbjct: 915 VNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTEL 974
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ K E VP
Sbjct: 975 GSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP-- 1032
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+IDI + +P YI +EM + + L + ++G+ P +E
Sbjct: 1033 -VEIDIQADAYIPEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVE 1089
Query: 741 ILLKKLYVRRMAADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTS 787
L ++ A ++G IT +++ G++ ++ ++ F M+
Sbjct: 1090 YLFTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----- 1144
Query: 788 EVHRNSLTFEGDQIKAELLLELPREQLLNWIFQC--LAE 824
+ EG Q+K + + + + L W++Q LAE
Sbjct: 1145 -----GVGMEGTQLK--ITINVQNKPLKEWLYQVKSLAE 1176
>gi|418445156|ref|ZP_13016650.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS8]
gi|387738610|gb|EIK25642.1| transcription-repair-coupling factor [Staphylococcus aureus subsp.
aureus VRS8]
Length = 1168
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 240/626 (38%), Positives = 389/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTENAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHSFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|423132820|ref|ZP_17120467.1| transcription-repair coupling factor [Myroides odoratimimus CIP
101113]
gi|371649577|gb|EHO15054.1| transcription-repair coupling factor [Myroides odoratimimus CIP
101113]
Length = 1120
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 242/629 (38%), Positives = 373/629 (59%), Gaps = 24/629 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
SL GDYV H GIGKF G+ K V+ + I+ V YAD + + +Y
Sbjct: 433 SLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLV---YADNDIVYVSIHSLHKISKY 489
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYL-HRLKQKRPPYPKNPA 270
N + P+ + KL + AW+ K K K ++ + +L++LY RL++ P +
Sbjct: 490 N-GKDGAVPK-IHKLG-SAAWKTLKNKTKARVKHIAFNLIQLYAKRRLQKGFQCAPDSYL 546
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E + F YE TPDQ KA +V+ D+ E+E PMDRL+CGDVGFGKTEVA+RA F +V
Sbjct: 547 QHELESSFIYEDTPDQLKATQEVKADM-EQERPMDRLVCGDVGFGKTEVAIRAAFKMVDN 605
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ +L PT +LA QH+ +ER P ++V ++RF++ +K E L ++ G ++I+
Sbjct: 606 GKQVAILVPTTILAFQHYQTFTERLKDMP-VRVSYINRFRTAKQKAEILKELEAGKIDIL 664
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ +V+ +LGLL++DEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L
Sbjct: 665 IGTHQLVNKGIVFKDLGLLIIDEEQKFGVAVKDKLKTISENVDTLTLTATPIPRTLQFSL 724
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S+ISTPPP R PI+T++ F++E + A+ YE++RGGQV+++ RI+ + E
Sbjct: 725 MAARDLSVISTPPPNRYPIETNVVGFNEEVIRDAVSYEIERGGQVYFINNRIENIREVAG 784
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P + I HGQ ++LEE M F G +L+ T I+ESGLD+ NANTI++ +
Sbjct: 785 MIQRLVPDAKVGIGHGQMDGKKLEELMLAFMNGEFDVLVATTIIESGLDVPNANTILINN 844
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A Y P S ++++A +R+ ALE+ +LG G +A
Sbjct: 845 ANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSAMTEEARKRIQALEQFSDLGSGLNIAM 904
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML-----------FESLSKVDEHCVISVPY 679
KD+ IRG G I G +Q+G + +G + + +++ F+ L + + V
Sbjct: 905 KDLEIRGAGDILGGEQSGFINEIGFETYQKIMQEAIEELKANEFKDLYEEENKEENKVFV 964
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
K QID + P EYIN++ + + NE +++ L Q+ + L ++G P
Sbjct: 965 KDTQIDTDFEILFPDEYINNITERLNLYNELSLITNEEV--LQQYEQRLIDRFGALPRQA 1022
Query: 740 EILLKKLYVRRMAADIGITKIYA-SGKMV 767
LL L ++ AA++GI KI GKM+
Sbjct: 1023 IALLNSLRIKWHAANMGIEKIVMKQGKMI 1051
>gi|290894278|ref|ZP_06557245.1| transcription-repair coupling factor [Listeria monocytogenes FSL
J2-071]
gi|404406667|ref|YP_006689382.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2376]
gi|290556162|gb|EFD89709.1| transcription-repair coupling factor [Listeria monocytogenes FSL
J2-071]
gi|404240816|emb|CBY62216.1| transcription-repair coupling factor [Listeria monocytogenes
SLCC2376]
Length = 1179
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 264/699 (37%), Positives = 407/699 (58%), Gaps = 49/699 (7%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L+ GDYVVH GI ++VG++ D+ + V +Y+ + Y G KL PV Q
Sbjct: 494 RIQSYSELKVGDYVVHVNHGIARYVGMETLDI---NGVHKDYLLLVY-QGEDKLFIPVDQ 549
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L + + E K PR L+KL W+R K K + ++Q + DL++LY R +K
Sbjct: 550 LD--LVQKYVGAEGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ + + EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALR
Sbjct: 606 AFSADDEMQREFEEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALR 664
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +
Sbjct: 665 AAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGM 723
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G ++++VGTH LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPI
Sbjct: 724 KNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPI 783
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R+
Sbjct: 784 PRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRV 843
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + D + P +A AHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 844 ESITQKADEISAMVPDARVATAHGQMGESELEAVILSFLEGEFDVLVTTTIIETGVDIPN 903
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+ VQD + GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E EL
Sbjct: 904 VNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTEL 963
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ K E VP
Sbjct: 964 GSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP-- 1021
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+IDI + +P YI +EM + + L + ++G+ P +E
Sbjct: 1022 -VEIDIQADAYIPEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVE 1078
Query: 741 ILLKKLYVRRMAADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTS 787
L ++ A ++G IT +++ G++ ++ ++ F M+
Sbjct: 1079 YLFTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----- 1133
Query: 788 EVHRNSLTFEGDQIKAELLLELPREQLLNWIFQC--LAE 824
+ EG Q+K + + + + L W++Q LAE
Sbjct: 1134 -----GVGMEGTQLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|163753497|ref|ZP_02160621.1| transcription-repair coupling factor [Kordia algicida OT-1]
gi|161327229|gb|EDP98554.1| transcription-repair coupling factor [Kordia algicida OT-1]
Length = 1095
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 250/631 (39%), Positives = 370/631 (58%), Gaps = 26/631 (4%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
+L GDYV H GIGKF G+K DV+ I+ ++ E + L + + + ++
Sbjct: 412 NLEVGDYVTHIDHGIGKFGGLKKIDVEGKKQEAIKLIYGER--DILYLSIHSLHK-ISKF 468
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
N + K P+ + KL + AW++ K K K ++ + +L+ELY R QK Y P
Sbjct: 469 N-GKDGKAPK-IYKLG-SGAWKKLKQKTKARVKHIAYNLIELYAKRRMQKGIQYGPDTHL 525
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E A F YE TPDQ KA DV+ D+ E E PMDRL+CGDVGFGKTEVA+RA F V
Sbjct: 526 QHELEASFIYEDTPDQSKATQDVKADM-ESERPMDRLVCGDVGFGKTEVAIRAAFKAVDN 584
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ +L PT +LA QHF SER + P I + L+RF+S ++ E L ++ G ++I+
Sbjct: 585 GKQVAILVPTTILAFQHFKTFSERLKEMP-ITIDYLNRFRSTKQRNEVLKGLEDGSVDIV 643
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ V + +LGLL+VDEEQ+FGV K+K+ + K +VD LTL+ATPIPRTL +L
Sbjct: 644 IGTHQLVNKAVKFKDLGLLIVDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSL 703
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S+I+TPPP R PI+TH+ F +E + A+ YE+ RGGQVF++ RI+ ++E
Sbjct: 704 MAARDLSVITTPPPNRYPIETHVIRFQEETIRDAVSYEIQRGGQVFFIHNRIENIKEVAG 763
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P I I HGQ ++LE+ M F G +L+ T I+ESGLD+ NANTI + +
Sbjct: 764 MIQRLVPDAKIGIGHGQMEGKKLEKLMLAFMNGEFDVLVSTTIIESGLDVPNANTIFINN 823
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A Y P S+++ A +R+ AL + LG GF +A
Sbjct: 824 ANNFGLSDLHQMRGRVGRSNKKAFCYFITPPDSVMTQDARKRINALVQFSTLGSGFNIAM 883
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS-----------VPY 679
KD+ IRG G + G +Q+G + +G D + ++L E++ ++ E+ V
Sbjct: 884 KDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNETIEELKENEFKELYEEQESKKEKVFL 943
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
K QID + P YIN + + + N+ +E E+D L + L ++G P
Sbjct: 944 KETQIDTDFELLFPDAYINTVSERLVLYNKLSELKTEED---LQTYENELVDRFGPLPEP 1000
Query: 739 MEILLKKLYVRRMAADIGITK-IYASGKMVG 768
LL + ++ +A +G+ K I GK+VG
Sbjct: 1001 AVDLLDSVRIKWLATKLGLEKIIMKKGKLVG 1031
>gi|422811093|ref|ZP_16859504.1| transcription-repair coupling factor [Listeria monocytogenes FSL
J1-208]
gi|378751298|gb|EHY61889.1| transcription-repair coupling factor [Listeria monocytogenes FSL
J1-208]
Length = 1179
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 264/699 (37%), Positives = 407/699 (58%), Gaps = 49/699 (7%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L+ GDYVVH GI ++VG++ D+ + V +Y+ + Y G KL PV Q
Sbjct: 494 RIQSYSELKVGDYVVHVNHGIARYVGMETLDI---NGVHKDYLLLVY-QGEDKLFIPVDQ 549
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L + + E K PR L+KL W+R K K + ++Q + DL++LY R +K
Sbjct: 550 LD--LVQKYVGAEGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ + + EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALR
Sbjct: 606 AFSADDEMQREFEEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALR 664
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +
Sbjct: 665 AAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGM 723
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G ++++VGTH LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPI
Sbjct: 724 KNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPI 783
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R+
Sbjct: 784 PRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRV 843
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + D + P +A AHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 844 ESITQKADEISAMVPDARVATAHGQMGESELEAVILSFLEGEFDVLVTTTIIETGVDIPN 903
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+ VQD + GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E EL
Sbjct: 904 VNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTEL 963
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ K E VP
Sbjct: 964 GSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP-- 1021
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+IDI + +P YI +EM + + L + ++G+ P +E
Sbjct: 1022 -VEIDIQADAYIPEYYITDGRQKIEMYKRFRNI--ETLNELEDLQSDMIDRFGEYPEEVE 1078
Query: 741 ILLKKLYVRRMAADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTS 787
L ++ A ++G IT +++ G++ ++ ++ F M+
Sbjct: 1079 YLFTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----- 1133
Query: 788 EVHRNSLTFEGDQIKAELLLELPREQLLNWIFQC--LAE 824
+ EG Q+K + + + + L W++Q LAE
Sbjct: 1134 -----GVGMEGTQLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|401680231|ref|ZP_10812153.1| transcription-repair coupling factor [Veillonella sp. ACP1]
gi|400218727|gb|EJO49600.1| transcription-repair coupling factor [Veillonella sp. ACP1]
Length = 1096
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/613 (42%), Positives = 377/613 (61%), Gaps = 20/613 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNL 213
L GDYVVH GIGK+VG+K + + +Y+ I YA G +L + ++ + +
Sbjct: 425 LSVGDYVVHSMHGIGKYVGLK--TIETEGIHRDYIEIAYA-GTDRLYLPASNLDQLQKYI 481
Query: 214 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIA 272
NE PR + K+ + W + TK + +I + L+ELY R + + P P
Sbjct: 482 GNEGDVPR-IHKMGGSD-WRKAVTKTQKSIDDLADKLVELYAKREITEGFAFLPDQPWQQ 539
Query: 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 332
EF FPYE T DQ +A +++ + ER TPMDRL+ GDVGFGKTEVA+RAIF V +GK
Sbjct: 540 EFEDAFPYEETEDQLQATREIKESM-ERPTPMDRLLAGDVGFGKTEVAMRAIFKAVVSGK 598
Query: 333 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392
Q VL PT VLA+QH+ RF+ + +KV +L+RF+S AEK+E L I++G ++I++G
Sbjct: 599 QVAVLVPTTVLAQQHYQTFLNRFNPF-GVKVDVLNRFRSTAEKKEVLKGIENGSIDILIG 657
Query: 393 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTG 452
THSLL +V + +LG LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++L G
Sbjct: 658 THSLLNKKVKFKDLGFLVVDEEQRFGVAQKEKWKEWANNIDVLTLSATPIPRTLHMSLVG 717
Query: 453 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 512
R+ S+ISTPP +RLP++T++ + + AIK E+ RGGQV++V R+ + + L
Sbjct: 718 VREMSVISTPPEDRLPVQTYVVEYDMNLIADAIKREIARGGQVYFVYNRVASINHMGELL 777
Query: 513 QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 572
+QA P + A+AHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+ D
Sbjct: 778 EQALPDLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDAD 837
Query: 573 QFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+LA +
Sbjct: 838 RLGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-MLSEAAEKRLKAIEEFTELGAGFKLAMR 896
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G++ +VG ++ ML E+++K V+ ID+ I+
Sbjct: 897 DLEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQNKEVVKEVVPDPAIDLEIDAF 956
Query: 692 LPSEYINHLENPME----MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
+ YI + M+ KA D+ T+ L ++G ++ LL+
Sbjct: 957 IDDAYIKDSARKISVYQRMLQIKNKAQLDDL------TDELIDRFGTPTDPVDRLLRVAQ 1010
Query: 748 VRRMAADIGITKI 760
++ A +GI I
Sbjct: 1011 IKEQARLLGIKSI 1023
>gi|406671666|ref|ZP_11078905.1| transcription-repair coupling factor [Facklamia hominis CCUG 36813]
gi|405580916|gb|EKB54975.1| transcription-repair coupling factor [Facklamia hominis CCUG 36813]
Length = 1197
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 257/673 (38%), Positives = 395/673 (58%), Gaps = 39/673 (5%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L GDYVVH GIG+++G+ + + S V + + IEY + +PV Q ++ +Y
Sbjct: 502 LEVGDYVVHVNHGIGRYIGM--ETMEISGVHRDLIAIEYQQNAKVMIPVDQI-HLIQKYV 558
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAI 271
E K P+ L KL + W + K K I+ + +L+ELY R ++K + + P
Sbjct: 559 SSGEAKTPK-LHKLG-GSEWVKTKQKVSSKIEDIADELIELYAKREQEKGYAFSMDTPEQ 616
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY TPDQ + ++++D+ E++ PMDRL+ GDVG+GKTEVA+RAIF V G
Sbjct: 617 LEFEKAFPYIETPDQLQTSSEIKKDM-EKDRPMDRLLVGDVGYGKTEVAMRAIFKAVMDG 675
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH+ + ERF+ YP ++ +LSRF S+ E++E + +K G ++V
Sbjct: 676 KQVAFLVPTTILAQQHYQSLLERFADYP-FEIRMLSRFASQKEQKETIKGLKTGACQVVV 734
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGL+VVDEEQRFGVK KE++ K VDVLTL+ATPIPRTL++A+
Sbjct: 735 GTHRLLSKDVTFLDLGLMVVDEEQRFGVKHKERLKQLKSQVDVLTLTATPIPRTLHMAMV 794
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T++ ++ + AI+ E+DRGGQ FY+ R+ + D
Sbjct: 795 GVRDLSVIETPPSNRYPVQTYVMEQNEAAIKFAIEREIDRGGQCFYLYNRVASIYHRADQ 854
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L Q P +A+AHGQ +LE + +F QG +L+ T I+E+G+DI N NT+ ++
Sbjct: 855 LSQLVPEARVAVAHGQMSEVELENVLYEFIQGNYDVLVTTTIIETGVDIPNVNTLFIEKA 914
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+ LYQLRGRVGR ++ A+AYL Y LS+ + +RL A+ E ELG GF++A +
Sbjct: 915 DRMGLSTLYQLRGRVGRTNRLAYAYLMYDPMKQLSEISEKRLNAIREFTELGSGFKIAMR 974
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD--EHCVISVPYKSVQIDININ 689
D+ IRG G + G QQ+G + +VG DL+ +ML E++ + ++ + ++ V+ID++I+
Sbjct: 975 DLSIRGAGNLLGSQQSGFIDSVGFDLYSQMLREAIDRRQGKQNMLENLNQSVVEIDLSID 1034
Query: 690 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRR-------QYGKEPYSMEIL 742
+P YI+ +E +K A + M E R +YG+ P + L
Sbjct: 1035 AYIPDSYIS---------DERQKIAAYKMLQKMDGMEEYREIQDQWIDRYGEFPDEVANL 1085
Query: 743 LKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG-DQI 801
L DI + + YAS V +K N + +M +S+ S+ +E + +
Sbjct: 1086 L----------DIALLRYYASRSGV-LKLTRNHQSIVVMFNSIASQYFYGPKVYEALENV 1134
Query: 802 KAELLLELPREQL 814
KA + L ++QL
Sbjct: 1135 KAREKVILNKDQL 1147
>gi|282882197|ref|ZP_06290836.1| transcription-repair coupling factor [Peptoniphilus lacrimalis 315-B]
gi|281297962|gb|EFA90419.1| transcription-repair coupling factor [Peptoniphilus lacrimalis 315-B]
Length = 1157
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/547 (41%), Positives = 356/547 (65%), Gaps = 14/547 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRMLYRY 211
L GDYVVH+ GIGK++G + +V S + +YV I+Y D LP+ ++ ++Y+Y
Sbjct: 494 LHVGDYVVHESHGIGKYIGTEQLEV---SGIKRDYVVIKYFGDDKLFLPI-ESLDLIYKY 549
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+E K P+ L+KL ++ W + K K K +I M DL++LY R + + K+ +
Sbjct: 550 T-GDEKKAPK-LNKL-NSIEWNKTKRKAKKSIDDMADDLIKLYAARESKNGFKFSKDSSF 606
Query: 272 A-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF F YE T Q + ++++D+ E PMDRL+C DVG+GKTEVALRA F +
Sbjct: 607 QREFEDAFIYEETDGQLLSSEEIKKDMEEAH-PMDRLLCADVGYGKTEVALRAAFKAILD 665
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH++++ ERF +P ++VG+LSRF++K E++E ++ +K G ++I+
Sbjct: 666 GKQVAFLVPTTILAQQHYNIMVERFKDFP-VEVGILSRFRTKKEQKETIEKLKAGIVDIV 724
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
VGTH LL VV+ +LGLL++DEEQRFGV+ KEK+ K ++D LTLSATPIPRTL +++
Sbjct: 725 VGTHRLLSKDVVFKDLGLLIIDEEQRFGVRHKEKLKMLKENIDTLTLSATPIPRTLQMSM 784
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+I PP ER P+KT++ ++ V AI E++RGGQV++V R+ +E +
Sbjct: 785 IGIRDMSVIEEPPEERFPVKTYVLEYNPLMVREAILREVERGGQVYFVYNRVANMEYKLQ 844
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L++ P V +A+GQ + LE+TM F +G + +L+C+ I+E+G+D+QNANT+I+ D
Sbjct: 845 ELRELVPEVSFVMANGQMNEKDLEDTMLSFLRGDVDVLLCSTIIETGMDVQNANTMIITD 904
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGR+GR+ + A+AY Y +S+ A +RL ++E E G GF++A
Sbjct: 905 SNRLGLSQLYQLRGRIGRSSRVAYAYFTYEKDVSISEIAQKRLKTIKEFTEFGSGFKIAL 964
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G+I G +Q G + N+G DL+ + L ++++K+ + + ID+ I+
Sbjct: 965 RDLEIRGSGSILGSKQHGHIDNIGYDLYMKYLTQAVNKL--KGIETRETIETVIDLKIDS 1022
Query: 691 RLPSEYI 697
+P YI
Sbjct: 1023 YIPKTYI 1029
>gi|440785116|ref|ZP_20962066.1| transcription-repair coupling factor [Clostridium pasteurianum DSM
525]
gi|440218488|gb|ELP57708.1| transcription-repair coupling factor [Clostridium pasteurianum DSM
525]
Length = 1171
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 247/668 (36%), Positives = 406/668 (60%), Gaps = 19/668 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRY 211
L+ GDY+VH GIG + GI + +V+ +Y+ + Y+ D +PV+Q ++ +Y
Sbjct: 503 LKPGDYIVHVNHGIGVYKGIEQLEVEGHKK---DYLELTYSGDDKLFVPVEQLD-LVQKY 558
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ ++ P+ ++KL W + K K + +I ++ +L++LY R K Y +
Sbjct: 559 -IGSDGNSPK-INKLG-GNEWSKAKNKVRKSINEIAEELVKLYAIRSTLKGYTYSNDTVW 615
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FPY+ TPDQ A D+++D+ E MDRL+CGDVG+GKTEVA+R F V
Sbjct: 616 QKQFEDEFPYDETPDQLSAIEDIKQDM-EVGKVMDRLLCGDVGYGKTEVAVRIAFKAVMD 674
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH+ +RFS +P +K+ ++SRF++ A+++ + +K G+++I+
Sbjct: 675 GKQVAFLVPTTILAEQHYTNFKKRFSDFP-VKIDMISRFRTSAQQKSTIKALKEGNVDIL 733
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH +L V + +LGLL+VDEEQRFGV KEKI + K ++DVLTL+ATPIPRTL+++L
Sbjct: 734 IGTHRILQKDVQFKDLGLLIVDEEQRFGVTHKEKIKNLKKNIDVLTLTATPIPRTLHMSL 793
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG RD S++ TPP ER P++T++ ++ + + AI EL+RGGQVF+V R++ + +
Sbjct: 794 TGVRDISVMETPPEERYPVQTYVVEYNDQLIRDAIMRELNRGGQVFFVYNRVETINDMAG 853
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L + P IA+AHGQ R+LE M F IL+CT I+E+G+DIQN NT+I+ D
Sbjct: 854 TLAKLLPEAKIAVAHGQMTERELETEMLGFMNKEYDILLCTTIIETGIDIQNVNTMIIYD 913
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR ++ A+AY Y +L++ A +RL A++E ELG GF++A
Sbjct: 914 ADRMGLSQLYQLRGRVGRTNRMAYAYFTYRKDKVLTEVAEKRLKAIKEFTELGSGFKIAM 973
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G Q G + ++G DL+ ML +++ + + + P ++ IDI ++
Sbjct: 974 RDLEIRGAGNMMGSAQHGHMASIGYDLYCRMLEDAIKQY-KGDIEKEPIETF-IDIKVDA 1031
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+P+ YI + +E+ + +D + +Q E L +Y P S+ L+ Y++
Sbjct: 1032 YIPNSYIKNEIQKIEIYKKIASIESKDEFLDIQ--EELEDRYSDIPPSVSNLMHIAYIKS 1089
Query: 751 MAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL--LLE 808
+A +G+ I + +K N ++ ++ ++ + ++ S+ F+ D + L
Sbjct: 1090 LARQLGVIDIKDKKDFINVKFNDKDRITDCLVKNLIKDYNK-SIIFKVDDKPMIIYNLKN 1148
Query: 809 LPREQLLN 816
L RE+LLN
Sbjct: 1149 LKREELLN 1156
>gi|77165119|ref|YP_343644.1| transcription-repair coupling factor [Nitrosococcus oceani ATCC
19707]
gi|254433553|ref|ZP_05047061.1| transcription-repair coupling factor [Nitrosococcus oceani AFC27]
gi|76883433|gb|ABA58114.1| transcription-repair coupling factor [Nitrosococcus oceani ATCC
19707]
gi|207089886|gb|EDZ67157.1| transcription-repair coupling factor [Nitrosococcus oceani AFC27]
Length = 1158
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 244/639 (38%), Positives = 376/639 (58%), Gaps = 17/639 (2%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQAS-RM 207
D L G VVH++ G+G+++G++ +V K V E++ +EYA G KL V +S +
Sbjct: 483 DLVELSIGAPVVHEEHGVGRYLGLQTLEVGK---VRTEFMALEYAGG-DKLYVPVSSLHL 538
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK 267
+ RY T L KL + WER K K + ++ + +L+ +Y R +K+ P P
Sbjct: 539 INRYT--GATPEAAPLHKLG-SNHWERAKRKARERVRDVAAELLAIYAQRAARKKLPLPT 595
Query: 268 -NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
+ FA FP+E TPDQ A V DLT + PMDRL+CGDVGFGKTEVA+RA F
Sbjct: 596 PDSHYTAFARAFPFEETPDQADAIQAVIADLTS-DQPMDRLVCGDVGFGKTEVAMRATFI 654
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
V AGKQ VL PT +LA+QH+ +RF+ +P +V ++SRF+S+ E+E + I G
Sbjct: 655 VSQAGKQVAVLVPTTLLAQQHYQSFKDRFADWP-ARVEVISRFRSRKEQEAVISGIADGR 713
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
+I++GTH LL + + NLGL+++DEE RFGV+QKE++ + + VD+LTL+ATPIPRTL
Sbjct: 714 ADIVIGTHKLLQENIRFKNLGLVIIDEEHRFGVRQKERMKALRTEVDILTLTATPIPRTL 773
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
+++L+ RD S+I+TPP RL IKT + ++ + A+ E+ RGGQV+++ ++ +
Sbjct: 774 HMSLSNLRDLSIIATPPARRLAIKTFVRQWNDNLLREALLREIKRGGQVYFLHNEVESIN 833
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
+ +Q FP + IAHGQ R+LE+ M F +LICT I+E+G+DI +ANTI
Sbjct: 834 KMAQRVQTLFPEAKVGIAHGQMRERELEQVMLNFYHRRFNVLICTTIIETGIDIPSANTI 893
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
I+ + GLAQLYQLRGRVGR+ A+AYL P +S+++ A++RL A+E ELG GF
Sbjct: 894 IIHRADKLGLAQLYQLRGRVGRSHHRAYAYLIVPPRSVMTADAIKRLDAIESLEELGAGF 953
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV---PYKSVQ 683
LA DM IRG G + G+ Q+G + +G DL+ ++L +++ + + + P + +
Sbjct: 954 TLASHDMEIRGAGELLGKDQSGQMQEIGFDLYHDLLERAVNSLKSGQALDLEQPPEQGSE 1013
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D++ +P +Y+ + +V A ++ L + + ++G P + + L
Sbjct: 1014 VDLHAPALIPEDYLPDVHT--RLVLYKRIATAKNHQALTELQVEMIDRFGLLPEATKTLF 1071
Query: 744 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMI 782
+R A +IGI KI A + KV M I
Sbjct: 1072 ATHELRLKANEIGIRKIEAGAHGGRIHFQSEPKVDPMAI 1110
>gi|221142305|ref|ZP_03566798.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|304380521|ref|ZP_07363197.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|384861165|ref|YP_005743885.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|384869087|ref|YP_005751801.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus T0131]
gi|387142191|ref|YP_005730584.1| putative transcription-repair coupling factor [Staphylococcus aureus
subsp. aureus TW20]
gi|418276826|ref|ZP_12891641.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21178]
gi|418946686|ref|ZP_13499101.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-157]
gi|418952828|ref|ZP_13504842.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-189]
gi|424784355|ref|ZP_18211166.1| Transcription-repair coupling factor [Staphylococcus aureus CN79]
gi|269940074|emb|CBI48450.1| putative transcription-repair coupling factor [Staphylococcus aureus
subsp. aureus TW20]
gi|302750394|gb|ADL64571.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|304340925|gb|EFM06849.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|329313222|gb|AEB87635.1| Transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus T0131]
gi|365174004|gb|EHM64405.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21178]
gi|375376188|gb|EHS79733.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-189]
gi|375377614|gb|EHS81067.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus IS-157]
gi|421957273|gb|EKU09596.1| Transcription-repair coupling factor [Staphylococcus aureus CN79]
Length = 1168
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 240/626 (38%), Positives = 389/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQV Y+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVLYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|139438721|ref|ZP_01772205.1| Hypothetical protein COLAER_01207 [Collinsella aerofaciens ATCC
25986]
gi|133775801|gb|EBA39621.1| transcription-repair coupling factor [Collinsella aerofaciens ATCC
25986]
Length = 1210
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 244/630 (38%), Positives = 386/630 (61%), Gaps = 15/630 (2%)
Query: 152 YSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYR 210
+ + GDYVVH GI F I Q+ +Y +EYADG +P++Q R + R
Sbjct: 530 FPFKPGDYVVHATHGIALFSEIAR--QEVGGKERDYFLLEYADGDKLYVPLEQVDR-ITR 586
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR--LKQKRPPYPKN 268
Y P+ K PR L++L +T W R K + +K+ DL++LY R + P P
Sbjct: 587 YVGPDGDK-PR-LTRL-NTADWTRATNKARKNAKKLAFDLVDLYTRRSSITGIACP-PDT 642
Query: 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328
P E FPY+ T DQ +A D++ D+ E PMDRL+CGDVGFGKTEVALRA F V
Sbjct: 643 PEQIEMEESFPYDETRDQLEAIADIKADM-EAPKPMDRLLCGDVGFGKTEVALRAAFKCV 701
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 388
+G+Q MVL PT +LA+QH++ ERF+ + ++V +LSRF++ A+++ L G ++
Sbjct: 702 DSGRQVMVLCPTTILAQQHYETFFERFAPF-GLEVEVLSRFRTPAQQKRALKAFAEGTID 760
Query: 389 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 448
+++GTH LL + V NLG++++DEEQRFGV+ KE++ + + +DVLTLSATPIPRT+ +
Sbjct: 761 VLIGTHRLLSADVNPKNLGMVIIDEEQRFGVQHKEQLKNLREQIDVLTLSATPIPRTMQM 820
Query: 449 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 508
A +G RD SLI+TPP R P+ H+ + + V +AI+ E+ RGGQV+YV R+K +++
Sbjct: 821 ATSGVRDMSLITTPPTGRRPVIVHVGEYDPDVVSAAIRLEVGRGGQVYYVSNRVKTIDDA 880
Query: 509 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 568
+ + +A P + +AHG+ R++E+ M +FA I +LI T IVESG+D ANT+I+
Sbjct: 881 VARVHEAAPEARVGVAHGKMSPREVEDVMIEFATKKIDVLIATTIVESGIDNATANTLII 940
Query: 569 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 628
+D Q+ GLAQLYQL+GRVGR+ +A+AY +P + L+++A RL AL E ++LG G ++
Sbjct: 941 EDSQRLGLAQLYQLKGRVGRSATQAYAYFMFPGELPLTEEATARLTALSEFQDLGSGMRI 1000
Query: 629 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDINI 688
A +D+ IRG G++ G +Q G++ +VG DLF +ML +++++ V SV I++
Sbjct: 1001 AMRDLEIRGAGSLMGAEQHGNLSSVGFDLFTQMLGQAVAEARGDDDAGVEAASVGINLPA 1060
Query: 689 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+ L EY+ ++ + + + AA +D+ + + E +G+ P + L + +
Sbjct: 1061 DYFLSEEYLPAVDQRVLVYRKL--AAAEDLESIDEVQEETEAAHGELPLAGLNLFNRARI 1118
Query: 749 RRMAADIGITKIYAS-GKMVGMKTNMNKKV 777
R +G+ + S G++ + ++ KKV
Sbjct: 1119 RIRGERLGLESVTLSGGRITFLGVDVPKKV 1148
>gi|392375575|ref|YP_003207408.1| transcription-repair-coupling factor (TRCF) (ATP-dependent helicase
mfd) [Candidatus Methylomirabilis oxyfera]
gi|258593268|emb|CBE69607.1| Transcription-repair-coupling factor (TRCF) (ATP-dependent helicase
mfd) [Candidatus Methylomirabilis oxyfera]
Length = 1152
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 257/617 (41%), Positives = 362/617 (58%), Gaps = 16/617 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS-RMLYRYN 212
L GD+VVH+ GIG + G++ + +Y+ I YA+ AKL V +++RY
Sbjct: 472 LTYGDFVVHEDHGIGVYKGLRQLTVGGTEG--DYLLILYAE-HAKLYVPTGKLHLIHRYA 528
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR--LKQKRPPYPKNPA 270
P TL +L + +W + K + K ++++M +L+ LY R +K P P P
Sbjct: 529 --GADSNPPTLDRLG-SASWAKAKERVKASVREMAQELLALYASRQVIKGHALP-PDTPW 584
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF A FPYE TPDQ +A DV+ D+ ER+ PMDRLICGDVG+GKTEVA+RA F +
Sbjct: 585 QREFEAGFPYEETPDQLQAIADVKADM-ERDRPMDRLICGDVGYGKTEVAMRAAFKTIIG 643
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ VL PT VLA QHF SERF +P KV +LSRF+S+ E+ E L + G ++I+
Sbjct: 644 GKQVAVLVPTTVLALQHFQTFSERFGGFP-AKVEMLSRFRSRKEQSEVLRGVGEGVVDIV 702
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH LL V + +LGLLVVDEE RFGV KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 703 IGTHRLLQKDVRFRDLGLLVVDEEHRFGVAAKERMKQLRRQVDVLTLTATPIPRTLHMSM 762
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S I T P RL IKT ++ F + AI++ELDRGGQVF+V R++ ++
Sbjct: 763 LGVRDISTIETAPDNRLSIKTTVARFDPALIKEAIEHELDRGGQVFFVHNRVESIQGVAR 822
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
++Q P +A+AHG+ +LE M F G +L+CT I+ESGLD+ ANTII+
Sbjct: 823 LIKQLVPEARLAVAHGELPEERLERIMCDFYDGTFNVLLCTTIIESGLDVSAANTIIIDR 882
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
GLAQLYQLRGRVGR A+AYL P + LS+ A +RL + E ELG GF++A
Sbjct: 883 ADALGLAQLYQLRGRVGRDKHRAYAYLLVPKDAALSETAKKRLQVIAELTELGSGFKVAA 942
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G +Q G + VG+DL+ L ES K + ++ P + V I +
Sbjct: 943 RDLEIRGTGNLLGPEQHGQIAAVGIDLYCR-LIESTVKELKGQAVAEPVEPV-IRLEAEG 1000
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
LP YI +++ AA + + E L ++G+ P E LL + +R
Sbjct: 1001 YLPEIYIEDSNVRLQLYKRL--AAFSGLSEVSALREELVDRFGEPPPETERLLTAMALRI 1058
Query: 751 MAADIGITKIYASGKMV 767
+A + I + GK +
Sbjct: 1059 LARTLHIREAVVVGKTI 1075
>gi|373109172|ref|ZP_09523451.1| transcription-repair coupling factor [Myroides odoratimimus CCUG
10230]
gi|423129160|ref|ZP_17116835.1| transcription-repair coupling factor [Myroides odoratimimus CCUG
12901]
gi|371645170|gb|EHO10696.1| transcription-repair coupling factor [Myroides odoratimimus CCUG
10230]
gi|371649536|gb|EHO15014.1| transcription-repair coupling factor [Myroides odoratimimus CCUG
12901]
Length = 1120
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 242/629 (38%), Positives = 373/629 (59%), Gaps = 24/629 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
SL GDYV H GIGKF G+ K V+ + I+ V YAD + + +Y
Sbjct: 433 SLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLV---YADNDIVYVSIHSLHKISKY 489
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYL-HRLKQKRPPYPKNPA 270
N + P+ + KL + AW+ K K K ++ + +L++LY RL++ P +
Sbjct: 490 N-GKDGAVPK-IHKLG-SAAWKTLKNKTKARVKHIAFNLIQLYAKRRLQKGFQCAPDSYL 546
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E + F YE TPDQ KA +V+ D+ E+E PMDRL+CGDVGFGKTEVA+RA F +V
Sbjct: 547 QHELESSFIYEDTPDQLKATQEVKADM-EQERPMDRLVCGDVGFGKTEVAIRAAFKMVDN 605
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ +L PT +LA QH+ +ER P ++V ++RF++ +K E L ++ G ++I+
Sbjct: 606 GKQVAILVPTTILAFQHYQTFTERLKDMP-VRVSYINRFRTAKQKAEILKDLEAGKIDIL 664
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ +V+ +LGLL++DEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L
Sbjct: 665 IGTHQLVNKGIVFKDLGLLIIDEEQKFGVAVKDKLKTISENVDTLTLTATPIPRTLQFSL 724
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S+ISTPPP R PI+T++ F++E + A+ YE++RGGQV+++ RI+ + E
Sbjct: 725 MAARDLSVISTPPPNRYPIETNVVGFNEEVIRDAVSYEIERGGQVYFINNRIENIREVAG 784
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P + I HGQ ++LEE M F G +L+ T I+ESGLD+ NANTI++ +
Sbjct: 785 MIQRLVPDAKVGIGHGQMDGKKLEELMLAFMNGEFDVLVATTIIESGLDVPNANTILINN 844
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A Y P S ++++A +R+ ALE+ +LG G +A
Sbjct: 845 ANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSAMTEEARKRIQALEQFSDLGSGLNIAM 904
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML-----------FESLSKVDEHCVISVPY 679
KD+ IRG G I G +Q+G + +G + + +++ F+ L + + V
Sbjct: 905 KDLEIRGAGDILGGEQSGFINEIGFETYQKIMQEAIEELKANEFKDLYEEENKEENKVFV 964
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
K QID + P EYIN++ + + NE +++ L Q+ + L ++G P
Sbjct: 965 KDTQIDTDFEILFPDEYINNITERLNLYNELSLITNEEV--LQQYEQRLIDRFGALPRQA 1022
Query: 740 EILLKKLYVRRMAADIGITKIYA-SGKMV 767
LL L ++ AA++GI KI GKM+
Sbjct: 1023 IALLNSLRIKWHAANMGIEKIVMKQGKMI 1051
>gi|303231983|ref|ZP_07318691.1| transcription-repair coupling factor [Veillonella atypica
ACS-049-V-Sch6]
gi|302513412|gb|EFL55446.1| transcription-repair coupling factor [Veillonella atypica
ACS-049-V-Sch6]
Length = 1096
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/613 (42%), Positives = 377/613 (61%), Gaps = 20/613 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNL 213
L GDYVVH GIGK+VG+K + + +Y+ I YA G +L + ++ + +
Sbjct: 425 LSVGDYVVHSMHGIGKYVGLK--TIETEGIHRDYIEIAYA-GTDRLYLPASNLDQLQKYI 481
Query: 214 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIA 272
NE PR + K+ + W + TK + +I + L+ELY R + + P P
Sbjct: 482 GNEGDVPR-IHKMGGSD-WRKAVTKTQKSIDDLADKLVELYAKREITEGFAFLPDQPWQQ 539
Query: 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 332
EF FPYE T DQ +A +++ + ER TPMDRL+ GDVGFGKTEVA+RAIF V +GK
Sbjct: 540 EFEDAFPYEETEDQLQATREIKESM-ERPTPMDRLLAGDVGFGKTEVAMRAIFKAVVSGK 598
Query: 333 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392
Q VL PT VLA+QH+ RF+ + +KV +L+RF+S AEK+E L I++G ++I++G
Sbjct: 599 QVAVLVPTTVLAQQHYQTFLNRFNPF-GVKVDVLNRFRSTAEKKEVLKGIENGSIDILIG 657
Query: 393 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTG 452
THSLL +V + +LG LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++L G
Sbjct: 658 THSLLNKKVKFKDLGFLVVDEEQRFGVAQKEKWKEWANNIDVLTLSATPIPRTLHMSLVG 717
Query: 453 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 512
R+ S+ISTPP +RLP++T++ + + AIK E+ RGGQV++V R+ + + L
Sbjct: 718 VREMSVISTPPEDRLPVQTYVVEYDMNLIADAIKREIARGGQVYFVYNRVASINHMGELL 777
Query: 513 QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 572
+QA P + A+AHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+ D
Sbjct: 778 EQALPDLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDAD 837
Query: 573 QFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+LA +
Sbjct: 838 RLGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-MLSEAAEKRLKAIEEFTELGAGFKLAMR 896
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G++ +VG ++ ML E+++K V+ ID+ I+
Sbjct: 897 DLEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQNKEVVKEVVPDPAIDLEIDAF 956
Query: 692 LPSEYINHLENPME----MVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
+ YI + M+ KA D+ T+ L ++G ++ LL+
Sbjct: 957 IDDAYIKDSARKISVYQRMLQIKNKAQLDDL------TDELIDRFGTPTDPVDRLLRVAQ 1010
Query: 748 VRRMAADIGITKI 760
++ A +GI I
Sbjct: 1011 IKEQARLLGIKSI 1023
>gi|374599502|ref|ZP_09672504.1| transcription-repair coupling factor [Myroides odoratus DSM 2801]
gi|423324650|ref|ZP_17302491.1| transcription-repair coupling factor [Myroides odoratimimus CIP
103059]
gi|373910972|gb|EHQ42821.1| transcription-repair coupling factor [Myroides odoratus DSM 2801]
gi|404607907|gb|EKB07398.1| transcription-repair coupling factor [Myroides odoratimimus CIP
103059]
Length = 1119
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/629 (38%), Positives = 375/629 (59%), Gaps = 24/629 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
SL G+YV H GIGKF G+ K V+ + I+ V YAD + + +Y
Sbjct: 433 SLTVGNYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLV---YADNDIVYVSIHSLHKIAKY 489
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR-PPYPKNPA 270
N + P+ + KL ++AW+ KTK K ++ + +L++LY R QK P +
Sbjct: 490 N-GKDGAVPK-IHKLG-SSAWKNLKTKTKARVKNIAFNLIQLYAKRRTQKGFACAPDSYL 546
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E + F YE TPDQ KA +V+ D+ E + PMDRL+CGDVGFGKTEVA+RA F +V
Sbjct: 547 QHELESSFIYEDTPDQLKATQEVKADM-ELDRPMDRLVCGDVGFGKTEVAIRAAFKMVDN 605
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ +L PT +LA QHF SER P ++V ++RF++ +K + L ++ G ++II
Sbjct: 606 GKQVAILVPTTILAFQHFKTFSERLKDMP-VRVSYINRFRTAKQKSDILRDLEAGQIDII 664
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ V++ +LGLL++DEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L
Sbjct: 665 IGTHQLVNKNVIFKDLGLLIIDEEQKFGVAVKDKLKTISENVDTLTLTATPIPRTLQFSL 724
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S+I+TPPP R PI+T++ F++E + A+ YEL+RGGQV+++ RI+ + E
Sbjct: 725 MAARDLSVITTPPPNRYPIETNVVGFNEEIIRDAVAYELERGGQVYFINNRIENIREVAG 784
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P + + HGQ ++LEE M F G +L+ T I+ESGLD+ NANTI++ +
Sbjct: 785 MIQRLVPDAKVGVGHGQMDGKKLEELMLAFMDGEFDVLVATTIIESGLDVPNANTILINN 844
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A Y P S ++++A +R+ ALE+ +LG GF +A
Sbjct: 845 ANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSAMTEEARKRIQALEQFSDLGSGFNIAM 904
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS-----------VPY 679
KD+ IRG G I G +Q+G + +G + + +++ E++ ++ E+ V
Sbjct: 905 KDLEIRGAGDILGGEQSGFINEIGFETYQKIMQEAIEELKENEFKDLYLEDKKEENKVFV 964
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
+ QID + P EY+N++ + + NE A + + L + + L ++G P
Sbjct: 965 RDCQIDTDFEILFPDEYVNNISERLNLYNELSTIATEPV--LKAYEQRLIDRFGPLPRQA 1022
Query: 740 EILLKKLYVRRMAADIGITK-IYASGKMV 767
LL L ++ A+++GI K I GKM+
Sbjct: 1023 VALLDSLRIKWHASNLGIEKVILKQGKMI 1051
>gi|418559593|ref|ZP_13124131.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21252]
gi|371974613|gb|EHO91933.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus 21252]
Length = 1168
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 240/626 (38%), Positives = 389/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHSFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>gi|338706308|ref|YP_004673076.1| transcription-repair coupling factor [Treponema paraluiscuniculi
Cuniculi A]
gi|335344369|gb|AEH40285.1| transcription-repair coupling factor [Treponema paraluiscuniculi
Cuniculi A]
Length = 1140
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 238/555 (42%), Positives = 355/555 (63%), Gaps = 12/555 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L GDYVVH + GIG F GI + K + +YV + YA + +P++QA ++ RY
Sbjct: 476 LNPGDYVVHAQYGIGLFKGI--ERIKTAQSERDYVNLLYAQEETILIPIEQA-HLVQRY- 531
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ NE +P L L + +WE RK + K +++ + L+ELY R + +PK+
Sbjct: 532 IGNEGNKPH-LDSLG-SKSWETRKARVKKSVENIAQKLVELYSLRKTTRGHAFPKDDEWQ 589
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
F A FPYE T DQ+ +V++D+ E PMDRL+CGDVG+GKTE+A+RA F V G
Sbjct: 590 YAFEAAFPYEETDDQRICIEEVKQDMQE-AVPMDRLVCGDVGYGKTEIAMRAAFKAVMGG 648
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ + L PT +L +QHF + RF +P +++ LSRF K+E+++ L + HG +++IV
Sbjct: 649 KQVVFLTPTTLLVEQHFRTICNRFKHFP-VRIEKLSRFVPKSEQKDILAKLAHGDIDLIV 707
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH L+ V + +LGL+++DEEQRFGV+ KEK+ K +VD L+LSATPIPRTL++ +
Sbjct: 708 GTHRLIQKDVSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPIPRTLHMGML 767
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD SL++TPP RLPI+T + F V +AI+ ELDR GQ+FY+ RI+ LE
Sbjct: 768 KIRDMSLLTTPPEGRLPIETVIQQFDPNLVATAIRKELDREGQIFYLHNRIENLESVKCM 827
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQ+ P + I +AH S +LE+ E+F Q ++L+ T I+E+G+D+ NANTII+
Sbjct: 828 LQKLVPELSICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPNANTIIIDRA 887
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+G++QLYQLRGRVGR+DK+A+AYL Y LSD A++RL + + +LG GF++A K
Sbjct: 888 DMYGVSQLYQLRGRVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDLGAGFKVALK 947
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
DM IRG G + G++Q+GD+ +VG DL+ ++L E++ ++ +H ++V ID+N
Sbjct: 948 DMEIRGVGNLLGKEQSGDIYSVGFDLYVQLLEEAIERL-QHAPNEQRIETV-IDLNYRGF 1005
Query: 692 LPSEYINHLENPMEM 706
+P YI E ME+
Sbjct: 1006 IPHTYIAADEIKMEL 1020
>gi|376290029|ref|YP_005162276.1| transcription-repair coupling factor [Corynebacterium diphtheriae C7
(beta)]
gi|372103425|gb|AEX67022.1| transcription-repair coupling factor [Corynebacterium diphtheriae C7
(beta)]
Length = 1266
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 256/706 (36%), Positives = 408/706 (57%), Gaps = 41/706 (5%)
Query: 147 YKVDPYSLRSGDYVVHKKVGIGKFVGIKFDV--QKDSTVPIEYVFIEYADGMAKLPVKQ- 203
++VDP +L++GDYVVH+ GIG+F+ + V D T EY+ +EYA P Q
Sbjct: 512 HRVDPLALKTGDYVVHETHGIGRFLKMTERVIQSGDETSRREYIVLEYAASKRGQPADQL 571
Query: 204 -----ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRL 258
+ ML +Y ++P TLSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 572 YVPMDSLDMLSKYV---GGEKP-TLSKMGGSD-WKNTKRKARAAVREIAGELVELYAKR- 625
Query: 259 KQKRPPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFG 315
Q P + P +P E FPY T DQ A V+ D+ E+ +PMDR++ GDVG+G
Sbjct: 626 -QSAPGHAFAPDSPWQHEMEDNFPYVETEDQMLAIDAVKADM-EKPSPMDRVVVGDVGYG 683
Query: 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 375
KTEVA+RA F V G+Q +VL PT +LA+QH ER + +P + + LSRF S +E
Sbjct: 684 KTEVAVRAAFKAVQDGRQVVVLVPTTLLAQQHLSTFEERMAGFP-VTIKGLSRFTSPSES 742
Query: 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVL 435
+E L + G ++I++GTH LL + V + NLGL++VDEEQRFGV+ KE I + + VDVL
Sbjct: 743 KEILKGLADGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVL 802
Query: 436 TLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQV 495
T+SATPIPRTL +++ G R+ S I TPP +R PI T++ A ++V +AI+ EL R GQV
Sbjct: 803 TMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQVAAAIRRELLRDGQV 862
Query: 496 FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555
FYV ++ +E+ L++ I +AHGQ LE+T++ F +L+CT IVE
Sbjct: 863 FYVHNKVSDIEKKARELRELVSEARIVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVE 922
Query: 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA 615
+GLDI NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP + L++ + +RLA
Sbjct: 923 TGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTENSYDRLAT 982
Query: 616 LEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDE 671
+ + +LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D
Sbjct: 983 IAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADG 1042
Query: 672 HCVISVPY--KSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESL 728
+ K ++ID+ ++ +P +YIN +E+ + A A ++D+ ++ E +
Sbjct: 1043 KVADATEQGPKEIRIDLPVDAHIPEDYINSERLRLEVYRKLAASANDKDLALVV---EEM 1099
Query: 729 RRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMK----TNMNKKVFKMMIDS 784
+ ++G P+ + LL +R +A G++ I G + + T+ + K + S
Sbjct: 1100 KDRFGPVPHEVRRLLAVSRLRHLARATGLSDIGVQGTRIKLHPVELTDSKQVRLKRLAPS 1159
Query: 785 MTSEVHRNSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
T ++ EG ++ + L ++ +LL W+ +AE++
Sbjct: 1160 ATYRAAAKAIQVPFPKEGAKVTDKQLRDV---ELLQWVADFIAEMF 1202
>gi|295397825|ref|ZP_06807889.1| transcription-repair coupling factor [Aerococcus viridans ATCC 11563]
gi|294973922|gb|EFG49685.1| transcription-repair coupling factor [Aerococcus viridans ATCC 11563]
Length = 1233
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 265/685 (38%), Positives = 410/685 (59%), Gaps = 29/685 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMA-KLPVKQASRMLYRYN 212
L GDYVVH GIG++ GI + + + +Y+ I +AD A +P+ Q ++ +Y
Sbjct: 500 LEVGDYVVHVNHGIGRYTGI--ETIEFAGTHQDYLTIVFADQAAIHVPIDQID-LVQKY- 555
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ E + P+ L+K+ + W + K K I+ + +L++LY R QK + P
Sbjct: 556 VSAEGREPK-LNKMGGSE-WAKTKQKVSSKIEDIADELIDLYASREAQKGFAFGPDTAEQ 613
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
AEF FPY T DQ ++ ++++D+ E E PMDRL+ GDVGFGKTEVA+RA+F + G
Sbjct: 614 AEFENAFPYTETDDQVRSIAEIKKDM-EVEKPMDRLLVGDVGFGKTEVAMRAVFKALMEG 672
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT VLA+QH++ +ERF+ +P ++GLLSRF+SKA++ E + +K G ++I++
Sbjct: 673 KQVAFLVPTTVLAQQHYETFTERFADWP-FEIGLLSRFRSKAQQNETIAGLKKGQVDIVI 731
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L V + +LGLLVVDEEQRFGVK KEK+ + K +VDVLTL+ATPIPRTL +++
Sbjct: 732 GTHRILSKDVEFLDLGLLVVDEEQRFGVKAKEKLKALKANVDVLTLTATPIPRTLNMSML 791
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T + + V AI+ E+ R GQVFY+ + +EE F
Sbjct: 792 GVRDLSVIETPPANRYPVQTFVMEQNYGAVKDAIEREIARDGQVFYLFNNVAQIEEKAAF 851
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+ + P +AIAHGQ QLE M F G +L+ T I+E+G+DI NANT++V+
Sbjct: 852 INELVPEARVAIAHGQMTVVQLENVMMDFVLGEFDVLVTTTIIETGVDIPNANTLLVEGA 911
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+ LYQLRGRVGR+ + A+AY Y PDK +LS+ + +RL AL + ELG GF++A
Sbjct: 912 DRMGLSTLYQLRGRVGRSTRIAYAYFMYRPDK-MLSEVSEKRLMALRDFTELGSGFKIAM 970
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G+QQ G V +VG DL+ +ML E++ + + + + V+I ++I+
Sbjct: 971 RDLSIRGAGNLLGKQQHGFVNSVGFDLYSQMLREAVQR-KRGILPAKKTEPVEISLSIDA 1029
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQD-IWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+P YI +E+ + D +W L + L +YG+ P ++LL+ ++
Sbjct: 1030 YIPQTYIRDERQKVEIYKRVQAMTSVDEMWDL---DDELMDRYGEPPIETQLLLQVGAIK 1086
Query: 750 RMAADIGIT---KIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAEL 805
A IG+T +I AS + V N+ +K+ M ++ + N Q+ A L
Sbjct: 1087 AAADKIGVTSIKRIAASNTIEVLFHENLEQKI---MTQAIFKALEDNPFRLAIKQVGAAL 1143
Query: 806 LL-----ELPREQLLNWIFQCLAEL 825
++ +L E+ L+++ Q +L
Sbjct: 1144 MISLGLNKLSTEEWLDYLLQFTTKL 1168
>gi|436833850|ref|YP_007319066.1| transcription-repair coupling factor [Fibrella aestuarina BUZ 2]
gi|384065263|emb|CCG98473.1| transcription-repair coupling factor [Fibrella aestuarina BUZ 2]
Length = 1161
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 240/622 (38%), Positives = 370/622 (59%), Gaps = 26/622 (4%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
+L+ GDYV H GIG+F G+ K DV + I + Y D L A + +Y
Sbjct: 478 TLQPGDYVTHVDHGIGRFAGMEKVDVGGNEQEAIRLI---YRDNDMLLVSIHALHKIAKY 534
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ + P T+SKL + WE +K+K + ++ + +L+ LY R + P + +P
Sbjct: 535 S--GKEGGPPTMSKLG-SQEWELKKSKVRKQVKDIARELITLYAKR--RNAPGFRYSPDS 589
Query: 272 ---AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328
AE + F YE TPDQ KA DV+ D+ ER PMDRL+CGDVGFGKTEVA+RA F V
Sbjct: 590 FLQAELESSFIYEDTPDQAKATADVKTDM-ERPHPMDRLVCGDVGFGKTEVAIRAAFKAV 648
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 388
+ KQ VL PT +LA QH++ +R +++P +KVG ++RF+S A+ +E L G L
Sbjct: 649 TDNKQVAVLVPTTILAMQHYNTFKDRLAQFP-VKVGYINRFKSAAQIKETLRQAASGELG 707
Query: 389 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 448
I++GTH ++ + + +LGLL++DEEQ+FGVK K+++ ++ VDVLTL+ATPIPRTL+
Sbjct: 708 ILIGTHRIVNKDIKFKDLGLLIIDEEQKFGVKTKDRLKEMRVEVDVLTLTATPIPRTLHF 767
Query: 449 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 508
+L G RD S+I+TPPP R P+ T + AFS + A+ YEL RGGQVF V R+ +E
Sbjct: 768 SLMGARDLSVIATPPPNRQPVTTEIHAFSDTILRDAVSYELKRGGQVFMVHNRVSDIESI 827
Query: 509 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 568
+ + + P I IAHGQ +LE+ M +F +G +L+ TNI+ESGLDI NANTII+
Sbjct: 828 GNKIMRLVPDARIGIAHGQMEGDRLEKVMTRFIEGETDVLVSTNIIESGLDIPNANTIII 887
Query: 569 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 628
FGL+ L+Q+RGRVGR++K+A YL P S+L+ A +RL LE+ +LG+GF++
Sbjct: 888 NQAHNFGLSDLHQMRGRVGRSNKKAFCYLLTPPASVLTSDARKRLQTLEDFSDLGEGFKI 947
Query: 629 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEH----------CVISVP 678
A +D+ IRG G + G +Q+G V ++G +++ ++L ES+ ++ E V
Sbjct: 948 AMRDLDIRGAGNLLGAEQSGFVNDLGYEMYHQILDESVQELRETEFKELFQETPDVFKPM 1007
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
I+ ++ +P Y+ ++ + + + +D L F + + ++G P
Sbjct: 1008 LPDTVIETDLEVLIPETYVTNISERLSLYTRLDNI--KDKAELQAFKKEVADRFGPPPAG 1065
Query: 739 MEILLKKLYVRRMAADIGITKI 760
++ L K + VR A ++ + K+
Sbjct: 1066 VDNLFKMVAVRWKAEELHLEKL 1087
>gi|238018751|ref|ZP_04599177.1| hypothetical protein VEIDISOL_00609 [Veillonella dispar ATCC 17748]
gi|237864517|gb|EEP65807.1| hypothetical protein VEIDISOL_00609 [Veillonella dispar ATCC 17748]
Length = 1098
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/611 (42%), Positives = 377/611 (61%), Gaps = 16/611 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNL 213
L GDYVVH GIGK++G+K + + +Y+ I+YA G KL + + + +
Sbjct: 425 LTPGDYVVHSMHGIGKYIGLK--TIETEGIHRDYIEIDYA-GSDKLFLPANNLDQLQKYI 481
Query: 214 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIA 272
NE PR ++K+ W + TK K +I + L++LY R + Q P P
Sbjct: 482 GNEGDVPR-INKMGGRD-WAKVVTKAKKSIDDLADKLVDLYAQREITQGFAFLPDQPWQQ 539
Query: 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 332
EF FPYE T DQ +A +++ + E+ PMDRL+ GDVGFGKTEVA+RAIF V +GK
Sbjct: 540 EFEDAFPYEETEDQLQATAEIKASM-EKPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGK 598
Query: 333 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392
Q VL PT VLA+QHF RF+ + +KV +L+RF+S AEK++ L ++ G +++++G
Sbjct: 599 QVAVLVPTTVLAQQHFQTFLNRFAPF-GVKVDVLNRFRSTAEKKQVLKGVEDGSIDVLIG 657
Query: 393 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTG 452
THSLL +VV+ +LG+LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++L G
Sbjct: 658 THSLLNKKVVFKDLGMLVVDEEQRFGVAQKEKWKEWANNIDVLTLSATPIPRTLHMSLVG 717
Query: 453 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 512
R+ S+I+TPP ERLP++T++ + V AIK EL RGGQV++V R+ + + L
Sbjct: 718 VREMSVINTPPEERLPVQTYVVEYDMNLVADAIKRELARGGQVYFVYNRVASINHMGELL 777
Query: 513 QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 572
++A PG+ AIAHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+ D
Sbjct: 778 EEALPGLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDAD 837
Query: 573 QFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+LA +
Sbjct: 838 RLGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-MLSEAAEKRLKAIEEFTELGAGFKLAMR 896
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G++ +VG ++ ML E+++K V ID+ ++
Sbjct: 897 DLEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQNKEVEREVSIDPAIDLEVDAF 956
Query: 692 LPSEYINHLENPMEMVNEAE--KAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+ YI + + K+ EQ L T+ L ++G ++ LL+ ++
Sbjct: 957 IDDAYIKDSARKISVYQRLLHIKSKEQ----LDDMTDELIDRFGTPTDPVDRLLRIAQIK 1012
Query: 750 RMAADIGITKI 760
A +GI I
Sbjct: 1013 EQARLLGIKSI 1023
>gi|86135186|ref|ZP_01053768.1| transcription-repair coupling factor [Polaribacter sp. MED152]
gi|85822049|gb|EAQ43196.1| transcription-repair coupling factor [Polaribacter sp. MED152]
Length = 1110
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 245/631 (38%), Positives = 370/631 (58%), Gaps = 29/631 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYV H GIGKF G+ K DVQ I+ ++ E + + + ++N
Sbjct: 430 LEIGDYVTHMDHGIGKFGGLQKIDVQGKKQEAIKLIYGERDILYVSI---HSLHKISKFN 486
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +P + KL + AW++ K K K ++ + +L++LY R QK + P
Sbjct: 487 --GKDGKPPKIYKLG-SGAWKKIKQKTKARVKHIAFNLIQLYAKRKLQKGFAFGPDTHIQ 543
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E F YE TPDQ A DV+RD+ E++ PMDRL+CGDVGFGKTEVA+RA F V G
Sbjct: 544 HELEGSFMYEDTPDQYSATQDVKRDM-EKDQPMDRLVCGDVGFGKTEVAVRAAFKAVDNG 602
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT +LA QH+ SER +P IK+ L+RF++ +K ++ + G ++II+
Sbjct: 603 KQVAILVPTTILAFQHYQTFSERLKDFP-IKIDYLNRFRTAKQKTAAINGVNDGSVDIII 661
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH L R+ + +LGLL++DEEQ+FGV K+K+ + K +VD LTL+ATPIPRTL +L
Sbjct: 662 GTHQLTNQRIKFKDLGLLIIDEEQKFGVAVKDKLKTLKENVDTLTLTATPIPRTLQFSLM 721
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD S+I TPPP R PI++++ FS+E + AI YE+ RGGQVF++ RI ++E
Sbjct: 722 AARDLSVIKTPPPNRHPIESNVIRFSEETIRDAISYEISRGGQVFFIHNRIDNIKEVAGL 781
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQ+ P I I HGQ ++LEE M F G +L+ T I+ESGLD+ NANTI + +
Sbjct: 782 LQRLVPSAKIGIGHGQMEGKKLEELMFGFMNGEFDVLVSTTIIESGLDVPNANTIFINNA 841
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+ L+Q+RGRVGR++K+A Y P +++D A +R+ AL +LG G +A K
Sbjct: 842 NNFGLSDLHQMRGRVGRSNKKAFCYFITPPYHMMTDDARKRIEALVLFSDLGSGINIAMK 901
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVI-------SVP---YKS 681
D+ IRG G + G +Q+G + ++G D + ++L E++ ++ E+ S P K
Sbjct: 902 DLEIRGAGDLLGGEQSGFINDIGFDTYQKILKEAIEELKENEFAELYPTDNSKPKEYVKE 961
Query: 682 VQIDININPRLPSEYINHLENPMEMVNE---AEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
VQID + P +YIN + + + N+ EK E L+ F + ++G+ P
Sbjct: 962 VQIDTDFEILFPDDYINSITERLALYNKLGTLEKEEE-----LLVFESEIIDRFGEIPTQ 1016
Query: 739 MEILLKKLYVRRMAADIGITK-IYASGKMVG 768
+E LL + ++ +A ++G+ K I ++VG
Sbjct: 1017 VEDLLNSVRIKWLAKELGLEKVILKQKRLVG 1047
>gi|410461741|ref|ZP_11315386.1| transcription-repair coupling factor [Bacillus azotoformans LMG 9581]
gi|409925445|gb|EKN62658.1| transcription-repair coupling factor [Bacillus azotoformans LMG 9581]
Length = 1172
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 234/567 (41%), Positives = 367/567 (64%), Gaps = 22/567 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + V +Y+ ++Y+ G KL PV+Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKYLGI--ETLEINGVHKDYLHLKYS-GNDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
++ + + +E K P+ + KL T W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQV--QKYVASEGKEPK-IYKLGGTD-WKKVKTKVQKSVQNIADDLIKLYAEREASKGYA 605
Query: 265 YPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ K+ E + F Y+ T DQ + ++++D+ E E PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FAKDGEEQRELESSFSYQETEDQLRCIEEIKKDM-ESERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF + GKQ L PT +LA+QH++ + ERF +P ++VGLLSRF++K ++ E + IK
Sbjct: 665 IFKAIMDGKQVAFLVPTTILAQQHYETIRERFQGFP-VEVGLLSRFRTKKQQTETIKGIK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G +++++GTH +L +VY +LGLLV+DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 AGTIDVVIGTHRILSKDIVYRDLGLLVIDEEQRFGVTHKEKIKKMKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R PI+T+++ ++ V AI+ EL R GQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPIQTYVAEYNPGLVREAIERELARDGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E + + P + AHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 844 EIERKAEEISMLVPDARVTYAHGQMNENELESVILSFLEGEFDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVYDADKMGLSQLYQLRGRVGRSNRVAYAYFTYQKDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP----Y 679
GF++A +D+ IRG G + G +Q G + VG DL+ +ML E+ +DE +P +
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDTVGFDLYSQMLKEA---IDERR--GMPKEEIF 1018
Query: 680 KSVQIDININPRLPSEYINHLENPMEM 706
+ V+I++ I+ +PS+YI + ++M
Sbjct: 1019 RDVEINLEIDAYIPSDYIQDGKQKIDM 1045
>gi|304315715|ref|YP_003850860.1| transcription-repair coupling factor [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777217|gb|ADL67776.1| transcription-repair coupling factor [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 1166
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 257/652 (39%), Positives = 394/652 (60%), Gaps = 25/652 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK---FD-VQKDSTVPIEYVFIEYA-DGMAKLPVKQASRML 208
L G YVVH GIGK+ GI+ FD V KD Y+ I+YA D +PV Q ++
Sbjct: 500 LTVGSYVVHVNYGIGKYEGIEKITFDGVTKD------YLKIKYAGDDKLFIPVDQLD-LI 552
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
+Y P + +P L+KL W + K K K A++ + DL++LY R K + K+
Sbjct: 553 QKYIGPED--KPPKLNKLG-GNEWSKLKKKAKKAVEDLAKDLIKLYAKRQTMKGYAFSKD 609
Query: 269 -PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
P +F +FPYE T DQ + +++RD+ E + PMDRL+CGDVG+GKTEVALRA F
Sbjct: 610 TPWQKDFEERFPYEETEDQLRCIEEIKRDM-ESDKPMDRLLCGDVGYGKTEVALRAAFKA 668
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V+ GKQ L PT +LA+QH++ +RF +P +K+ +LSRF+S E+ + + + G +
Sbjct: 669 VADGKQVAFLCPTTILAEQHYNNFVQRFKDFP-VKIEMLSRFRSYKEQSQIIKSLAEGTI 727
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I+VGTH +L + V + +LGLL++DEEQRFGVK KEKI K ++DVL+LSATPIPRTL+
Sbjct: 728 DILVGTHKILQNDVKFKDLGLLIIDEEQRFGVKHKEKIKKLKENIDVLSLSATPIPRTLH 787
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
++L G RD S+I PP +R P++T++ F++E + AI EL RGGQV++V RI G+E
Sbjct: 788 MSLIGIRDMSVIENPPEDRYPVQTYVVEFNEELIRDAILRELGRGGQVYFVYNRINGIER 847
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+++ P +A+AHGQ +LE M F G IL+CT I+E+GLDI N NTII
Sbjct: 848 MASIIKELVPSARVAVAHGQMDEGKLENIMIGFLNGDYDILVCTTIIETGLDIPNVNTII 907
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
V D + GL+QLYQLRGRVGR+++ A+AY Y ++++ A +RL A++E E G GF+
Sbjct: 908 VYDSDKMGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVITEVAEKRLEAIKEFTEFGSGFK 967
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDIN 687
+A +D+ IRG G + G +Q G + +G D++ +L E++ + P + IDI
Sbjct: 968 IAMRDLEIRGAGNLLGAEQHGHIDAIGYDMYLRLLDEAIKGLKGEVEDEKP--NTTIDIK 1025
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAA-EQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
++ + EYI +EM + E+D+ + L ++ + P ++E L+
Sbjct: 1026 VSAYIDKEYIEDENQRLEMYKKISSIENEKDVE---DIKDELIDRFKEYPKAVESLIDVA 1082
Query: 747 YVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG 798
Y++ +A D+ I +I G + +K NK + ++D++ +E + + F G
Sbjct: 1083 YLKALARDVNILEITERGNSIILKFKDNKSINSSIVDALVNE-FKGKIMFSG 1133
>gi|78357082|ref|YP_388531.1| transcription-repair coupling factor [Desulfovibrio alaskensis G20]
gi|78219487|gb|ABB38836.1| transcription-repair coupling factor [Desulfovibrio alaskensis G20]
Length = 1152
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 251/627 (40%), Positives = 370/627 (59%), Gaps = 28/627 (4%)
Query: 142 AGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYA-DGMAKL 199
+G F+ L +G +VH+ G+ +F G+ + D+ V +Y+ + YA D L
Sbjct: 475 SGAFAGLKSYDDLEAGAMLVHRDYGVARFEGLLRMDL---GGVSNDYLLLRYAGDDKLYL 531
Query: 200 PVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK 259
PV + S ++ R+ P+ T +L KL W K+K + AI+++ DL+E+Y R
Sbjct: 532 PVDRLS-LVQRFKGPDGTAP--SLDKLG-GAGWSASKSKARKAIERIAHDLVEMYAWRKV 587
Query: 260 QKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTE 318
K Y P N EF A F +E TPDQ +A DV D+ ER PMDRL+CGDVGFGKTE
Sbjct: 588 AKGYRYSPVNDMYREFEASFGFEETPDQARAIEDVLDDM-ERAEPMDRLVCGDVGFGKTE 646
Query: 319 VALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378
VALRA F GKQ +L PT VLA+QHF R ++P + VG+LSRF S+ ++E
Sbjct: 647 VALRAAFRAAMDGKQVALLCPTTVLAEQHFQTFRSRLGQFP-VNVGMLSRFVSRQRQKEV 705
Query: 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLS 438
L + G ++I++GTH +L V+ NL LL++DEEQRFGV+ KE++ + +VDVLTL+
Sbjct: 706 LAACERGQIDILIGTHRILSDDVILPNLSLLILDEEQRFGVRHKERLKKMRRNVDVLTLT 765
Query: 439 ATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYV 498
ATPIPRTL L+++G R+ S+I T PPER P+KT L + + + EL R GQVF+V
Sbjct: 766 ATPIPRTLQLSMSGIRELSVIETAPPERKPVKTALIDRDPDILREVLLRELQREGQVFWV 825
Query: 499 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558
R++GLE ++++ P + +AHGQ + LEETM KF + +L+CT IVESGL
Sbjct: 826 HNRVQGLERVAEYVRSLVPDARVGMAHGQMSEKALEETMHKFWHAELDVLVCTAIVESGL 885
Query: 559 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 618
D ANT++V Q FGL QLYQLRGRVGR+D++AHA PD + + A +RL + E
Sbjct: 886 DFPRANTLVVDQAQMFGLGQLYQLRGRVGRSDRQAHAVFVVPDVDGVPELARKRLKIILE 945
Query: 619 CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP 678
LG GFQ+A +D+ +RG G I GE Q+G + +G+D++ EML E ++++ V
Sbjct: 946 MDYLGAGFQVAMEDLRLRGAGNILGEVQSGHMVKIGLDMYLEMLEEEVARLKGEPV---- 1001
Query: 679 YKSVQIDIN--INPRLPSEYIN----HLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQY 732
+ VQ ++N I +P Y++ L+ + + A+ AA++ I M R ++
Sbjct: 1002 REDVQTELNIGITAHIPEGYMDDGRERLKYYKALSSAADGAAQESIELEM------RDRF 1055
Query: 733 GKEPYSMEILLKKLYVRRMAADIGITK 759
G P ++ L L ++R + + K
Sbjct: 1056 GHFPQELQAFLGILRLKRYLGTLDVQK 1082
>gi|333998499|ref|YP_004531111.1| transcription-repair coupling factor [Treponema primitia ZAS-2]
gi|333741225|gb|AEF86715.1| transcription-repair coupling factor [Treponema primitia ZAS-2]
Length = 1145
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 246/647 (38%), Positives = 394/647 (60%), Gaps = 26/647 (4%)
Query: 146 SYKVDPY-SLRSGDYVVHKKVGIGKFVGIK----FDVQKDSTVPIEYVFIEY-ADGMAKL 199
S +D + L GD+VVH GIG F GI+ ++D Y+ +EY + + +
Sbjct: 472 SVAIDTFVELNPGDFVVHINYGIGLFKGIERIKALGHERD------YIKLEYLGEEIVFV 525
Query: 200 PVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK 259
P++Q + ++ RY + NE PR + KL + +WE RK + K +++ + L+ELY R
Sbjct: 526 PIEQVN-LVQRY-IGNEGSPPR-MDKLG-SKSWENRKGRVKKSVEDIAEKLIELYSKRKA 581
Query: 260 QKRPPYPKNPAIAE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTE 318
+ +P++ F A FP++ T DQ + +++ D+ E PMDRLICGDVG+GKTE
Sbjct: 582 SRGFAFPQDSEWQTMFEAAFPFDETEDQLRCVEEIKDDM-ESTHPMDRLICGDVGYGKTE 640
Query: 319 VALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378
VA+RA F V GKQ LAPT +LA+QHF+ ERFS++P I++G+LSRF +A +
Sbjct: 641 VAVRACFKAVMGGKQVAFLAPTTILAEQHFENFQERFSQFP-IRLGMLSRFVDRAAARKT 699
Query: 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLS 438
L+ ++ G ++I+VGTH ++ V + +LGL+V+DEEQRFGVK KE++ K +VD LTLS
Sbjct: 700 LEAVQKGEIDILVGTHRIIQKDVSFRDLGLIVIDEEQRFGVKDKERLKELKHNVDCLTLS 759
Query: 439 ATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYV 498
ATPIPRTL+++L RD SL++TPP R PI+T + ++++++ +AI+ E++RGGQVF++
Sbjct: 760 ATPIPRTLHMSLLKIRDMSLLATPPNNRHPIETVIGEYNEDRLAAAIRAEVERGGQVFFL 819
Query: 499 LPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558
R++ L E ++ P + + AHGQ ++ LE+ M +F G +L+ T I+E+G+
Sbjct: 820 HNRVESLNETRIRIEHLAPEMLVETAHGQMDAQDLEDVMHRFIHGGFHVLVSTTIIENGI 879
Query: 559 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 618
DI N NTII+ +G++QLYQLRGRVGR+D+ A+AYLFYP LS+ A++RL + +
Sbjct: 880 DIPNVNTIIIDRADMYGVSQLYQLRGRVGRSDRVAYAYLFYPRDRALSELAMKRLQVISD 939
Query: 619 CRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP 678
ELG GF++A KDM IRG G + G +Q+GD+ +VG DL+ +L +++ ++ E+
Sbjct: 940 FTELGSGFKIAMKDMEIRGAGNLLGREQSGDIYSVGFDLYLRLLDDAVRRL-ENSQYEAE 998
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+++ +++ +P YI+ + ME+ + +D L L ++G P
Sbjct: 999 TETL-LELEYTGFIPDFYIDGAQEKMEVYKKIAAVKTRD--ELESLHGELMDRFGPPPDE 1055
Query: 739 MEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSM 785
LL +R + DI + + G V ++ KV ++ ID +
Sbjct: 1056 AASLLALAEIRIICRDISVFSLRERGGSVKVEFG---KVSRVKIDRL 1099
>gi|183221209|ref|YP_001839205.1| transcription-repair coupling factor [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|189911300|ref|YP_001962855.1| transcription-repair coupling factor [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167775976|gb|ABZ94277.1| Transcription-repair coupling factor [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167779631|gb|ABZ97929.1| Transcription-repair coupling factor (TRCF; ATP-dependent helicase
Mfd) [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 1140
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 245/606 (40%), Positives = 381/606 (62%), Gaps = 17/606 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRMLYRYN 212
L+ GDYVVH G+G+FV K + K +++ +EYA G + +P+ Q S ++ +Y
Sbjct: 478 LKEGDYVVHVNHGVGRFV--KIERTKADGKERDFLKLEYAGGDSLFVPLDQIS-LVQKYI 534
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
++ + TL K +W++ K + + ++ K+ +L+ LY +RLK +P +
Sbjct: 535 GGTDSPKLDTLGK----NSWKKAKERVQESVDKLAEELVLLYSNRLKLNGFAFPPDTIWQ 590
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A F +E TPDQ A V+ DL E PMDRL+CGDVG+GKTEVA+RA F V+ AG
Sbjct: 591 EEFEAAFEFEETPDQISAIEAVKLDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVIMAG 649
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ M+L PT +L+ QHF+ +R+ YP IK+ +SRF+S AE E L G +++++
Sbjct: 650 KQVMLLTPTTILSLQHFNTFKQRYENYP-IKIAFVSRFRSPAEIREDLKNFTEGKIDMLI 708
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH++L S+V NLGLL++DEEQ+FGV KE I FK VDVLTL+ATPIPRTL++ALT
Sbjct: 709 GTHAILSSKVKPKNLGLLIIDEEQKFGVTHKESIKKFKNLVDVLTLTATPIPRTLHMALT 768
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G R+ S+IST P R ++T++ + AI+ E++RGGQVFY+ R++ +EE +
Sbjct: 769 GIRELSIISTAPKNRQSVETYVLEEDDTLIQEAIRKEIERGGQVFYLYNRVESIEEEASY 828
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
++ P V + I HGQ ++EET+ +F + IL+ T I+ESG+D+ N NT+IV+
Sbjct: 829 VRSLVPEVSVGILHGQLTEDEIEETLVEFYERKYDILVTTTIIESGIDMPNVNTLIVKKA 888
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQ+RGRVGR+D++A+AY+FYP K L+++ A +RL + E +ELG GF++A +
Sbjct: 889 DMFGLSQLYQIRGRVGRSDRKAYAYMFYPSKKLMTELAEKRLNTIFEYQELGSGFKVAMR 948
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININP 690
D+ IRG G + G++Q+GD+ VG DL+ +ML ES+S++ E + V +++ N
Sbjct: 949 DLEIRGAGNLLGKEQSGDIMEVGFDLYVKMLEESISRIKGEEVRVEV---RTAVNLKTNF 1005
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
LP +YI + +E E +A D + + + ++G+ P ++ +R
Sbjct: 1006 YLPDDYIPDTKQKIEFYKRFEGSANLD--EIEELALEMEDRFGELPQIANTFVELEKIRT 1063
Query: 751 MAADIG 756
+A+++G
Sbjct: 1064 LASNLG 1069
>gi|187918482|ref|YP_001884045.1| transcription-repair coupling factor [Borrelia hermsii DAH]
gi|119861330|gb|AAX17125.1| transcription-repair coupling factor [Borrelia hermsii DAH]
Length = 1122
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 233/561 (41%), Positives = 353/561 (62%), Gaps = 28/561 (4%)
Query: 149 VDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASR 206
+D + + +VVH GIG F IK K S + +Y+ IEYAD +P++Q +
Sbjct: 454 IDSFIEVEKNSHVVHINHGIGIFKQIK--RIKTSLLEKDYIEIEYADNEKLFIPIEQ-TH 510
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP 266
++ RY + NE + + L K+S T WE++K K I + L+ LY R K YP
Sbjct: 511 LIQRY-IGNENQNIK-LDKISSKT-WEKKKANAKKRIDAIADQLVSLYSARESTKGFQYP 567
Query: 267 K-NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
+ N F ++F Y+ TPDQ A ++++D+ + MDRL+CGDVGFGKTEVA+RA F
Sbjct: 568 QDNEWQLLFESEFAYDETPDQLTAISEIKQDMMSLKV-MDRLLCGDVGFGKTEVAMRAAF 626
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
V KQ +L+PT +LA+QHF+ +RF +P IK+ ++SRF K+++ E + + G
Sbjct: 627 KAVMGTKQVAILSPTTILAEQHFNTFKKRFKNFP-IKIAMMSRFIKKSKEREIIKNLATG 685
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++II+GTH +L +++Y NLGL+++DEEQRFGV++KEK+ K+SVD LTLSATPIPR+
Sbjct: 686 EIDIIIGTHKILSKKIIYKNLGLIIIDEEQRFGVREKEKLKEIKVSVDCLTLSATPIPRS 745
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L+++L RD S++ TPP R+ I+T++ FS+ + AI++EL R GQVF+V I+ L
Sbjct: 746 LHMSLIKLRDISVLKTPPQNRIKIETYVEEFSELLIKHAIEHELSRDGQVFFVHHNIQEL 805
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
+ L++ P IA H + Q+E M F + ++L+ T I+E+G+DI+NANT
Sbjct: 806 DLIKAMLEKVVPYARIATIHARLTGDQIENIMHDFINKSYQVLLSTTIIENGIDIENANT 865
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
II+ + +FGLAQLYQLRGRVGR+ ++A AY Y + S L++ A+ERL A+ E ELG G
Sbjct: 866 IIINNANRFGLAQLYQLRGRVGRSSQKAFAYFLYKESSSLNESAIERLRAISEFSELGAG 925
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL-------SKVDEHCVISVP 678
FQ+A KDM IRG G + G++Q G++ ++G+D + ML +++ SK DE
Sbjct: 926 FQIAMKDMEIRGVGNLLGKEQHGEIESIGLDYYLTMLNKAIEKRMGKNSKEDE------- 978
Query: 679 YKSVQIDININPRLPSEYINH 699
+ I+IN N +P Y+N+
Sbjct: 979 ---ITIEINYNGFIPDSYVNN 996
>gi|257871350|ref|ZP_05651003.1| transcription-repair coupling factor [Enterococcus gallinarum EG2]
gi|357051465|ref|ZP_09112654.1| transcription-repair coupling factor [Enterococcus saccharolyticus
30_1]
gi|257805514|gb|EEV34336.1| transcription-repair coupling factor [Enterococcus gallinarum EG2]
gi|355379761|gb|EHG26913.1| transcription-repair coupling factor [Enterococcus saccharolyticus
30_1]
Length = 1173
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 239/592 (40%), Positives = 370/592 (62%), Gaps = 13/592 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 496 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 551
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E+K P+ ++KL + W + K K I+ + DL+ LY R +K + P +
Sbjct: 552 VASESKTPK-INKLGGS-EWAKTKRKVSAKIEDIADDLILLYAKRESEKGYAFQPDDGYQ 609
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVGFGKTEVALRA F +
Sbjct: 610 KEFEDAFPYSETDDQLRSTAEIKRDM-EKEKPMDRLLVGDVGFGKTEVALRAAFKAIKES 668
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + +RF +P + VGLLSRF++K ++ E ++ +K G ++I+V
Sbjct: 669 KQVAFLVPTTILAQQHYETMLDRFEGFP-VNVGLLSRFRTKKQQTETIEQVKKGQIDILV 727
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 728 GTHRLLSKDVEFADLGLLVIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSML 787
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + V AI E+ RGGQVFY+ R+ +E ++
Sbjct: 788 GVRDLSVIETPPENRYPIQTYVMEMNPGAVREAILREMARGGQVFYLYNRVDTIERKVEE 847
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQ P I AHGQ QLE T+ F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 848 LQALVPDARIGYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 907
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 908 DYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 967
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML ES+++ + +V+ID+ I+
Sbjct: 968 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSESVAR-KQGKNTQAEKTTVEIDLGIDAY 1026
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
LP+ YI +E+ + Q+ + + + L ++G+ P + LL
Sbjct: 1027 LPTSYIEDERQKIEIYKRIRELDSQE--AVDELQDDLLDRFGEYPVEVAHLL 1076
>gi|221195325|ref|ZP_03568381.1| transcription-repair coupling factor [Atopobium rimae ATCC 49626]
gi|221185228|gb|EEE17619.1| transcription-repair coupling factor [Atopobium rimae ATCC 49626]
Length = 1150
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 245/628 (39%), Positives = 386/628 (61%), Gaps = 23/628 (3%)
Query: 146 SYKVDPYSL----RSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI-EYVFIEYADG-MAKL 199
S ++DP S+ + GDYVVH K GI F I V++++ + +Y +EYA G +
Sbjct: 475 SKRIDPTSVTFPFKPGDYVVHAKHGIAYFKEI---VREEAAGRMRDYFLLEYAHGDKLYV 531
Query: 200 PVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK 259
P +Q R L RY P+ PR L++LS T W R K + + +K+ DL++LY R
Sbjct: 532 PFEQVDR-LTRYVGPDGAA-PR-LTRLS-TADWSRATAKARKSAKKLAFDLVDLYTRRAS 587
Query: 260 QKRPPYP---KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGK 316
P Y P E + FPY+ TPDQ+ A D++ D+ R+ PMDRL+CGDVGFGK
Sbjct: 588 V--PGYAFSFDTPEQEEMESAFPYQMTPDQESALADIKLDMEARK-PMDRLLCGDVGFGK 644
Query: 317 TEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKE 376
TEVALRA F G+Q M+L PT +LA+QHF+ RF+ + ++V +LSRF + A +
Sbjct: 645 TEVALRAAFKACQDGRQVMILCPTTILAQQHFETFFSRFAPF-GLQVAVLSRFVTPALQR 703
Query: 377 EHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLT 436
+ L+ G +N++VGTH LL + V ++LGL++VDEEQRFGV+ KE++ + + VDVLT
Sbjct: 704 KALEGFADGSVNVLVGTHRLLSADVNPHDLGLVIVDEEQRFGVQHKEQLKNMREQVDVLT 763
Query: 437 LSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVF 496
LSATPIPRT+ +A++G RD SLI TPPP R P+K + + + V +AI+ EL R GQV+
Sbjct: 764 LSATPIPRTMQMAMSGVRDMSLIMTPPPGRKPVKVTVGEYDPDLVSAAIRAELARKGQVY 823
Query: 497 YVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556
YV R+ +++ + + +A P + +AHGQ +R++E+ M +F + I +L+ T I+ES
Sbjct: 824 YVSNRVTTIDDAVSRVNEAAPEARVGVAHGQMSAREVEDVMLRFQEHEIDVLVATTIIES 883
Query: 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAAL 616
G+D + NT+I++D ++ GLAQLYQL+GRVGR ++A+AY +P + L+++A RL A+
Sbjct: 884 GIDNPHTNTLIIEDSERLGLAQLYQLKGRVGRGRQQAYAYFMFPAEMPLTEEATARLTAI 943
Query: 617 EECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS 676
E ++LG G ++A +D+ IRG G++ G +Q G++ VG DLF +ML E++++
Sbjct: 944 NEYQDLGSGMKIAMRDLEIRGAGSLMGAEQHGNLSGVGFDLFTQMLGEAVAEARGETP-D 1002
Query: 677 VPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEP 736
V V +++ + L EY+ ++ + + AA QD+ + + + ++G P
Sbjct: 1003 VEQSEVTLNLPTDFFLDEEYLPEVDRRVLVYRRL--AAAQDLADVDEIQQETEERFGALP 1060
Query: 737 YSMEILLKKLYVRRMAADIGITKIYASG 764
+ + L + VR A +G++ I +G
Sbjct: 1061 LAGKNLFDRARVRIRAERLGLSSISLTG 1088
>gi|15639335|ref|NP_218784.1| transcription-repair coupling factor (trcF) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189025577|ref|YP_001933349.1| transcription-repair coupling factor [Treponema pallidum subsp.
pallidum SS14]
gi|378974972|ref|YP_005223580.1| transcription-repair coupling factor [Treponema pallidum subsp.
pallidum DAL-1]
gi|408502225|ref|YP_006869669.1| transcription-repair coupling factor [Treponema pallidum subsp.
pallidum str. Mexico A]
gi|3322623|gb|AAC65332.1| transcription-repair coupling factor (trcF) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189018152|gb|ACD70770.1| transcription-repair coupling factor [Treponema pallidum subsp.
pallidum SS14]
gi|374680370|gb|AEZ60660.1| transcription-repair coupling factor [Treponema pallidum subsp.
pallidum DAL-1]
gi|408475588|gb|AFU66353.1| transcription-repair coupling factor [Treponema pallidum subsp.
pallidum str. Mexico A]
Length = 1140
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 240/564 (42%), Positives = 359/564 (63%), Gaps = 13/564 (2%)
Query: 146 SYKVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQ 203
S +D + L GDYVVH + GIG F GI + K + +YV + YA + +P++Q
Sbjct: 467 STPIDTFVELNPGDYVVHAQYGIGLFKGI--ERIKTAQSERDYVNLLYAQEETILIPIEQ 524
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
A ++ RY + NE +P L L + +WE RK + K +++ + L+ELY R +
Sbjct: 525 A-HLVQRY-IGNEGNKPH-LDSLG-SKSWETRKARVKKSVENIAQKLVELYSLRKTTRGH 580
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+PK+ F A FPYE T DQ+ +V++D+ E PMDRL+CGDVG+GKTE+A+R
Sbjct: 581 AFPKDDEWQYAFEAAFPYEETDDQRICIEEVKQDMQE-AVPMDRLVCGDVGYGKTEIAMR 639
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F V GKQ + L PT +L +QHF + RF +P +++ LSRF K+E+++ L +
Sbjct: 640 AAFKAVMGGKQVVFLTPTTLLVEQHFRTICNRFKHFP-VRIEKLSRFVPKSEQKDILAKL 698
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
HG +++IVGTH L+ V + +LGL+++DEEQRFGV+ KEK+ K +VD L+LSATPI
Sbjct: 699 AHGDIDLIVGTHRLIQKDVSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPI 758
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++ + RD SL++TPP RLPI+T + F V +AI+ ELDR GQ+FY+ RI
Sbjct: 759 PRTLHMGMLKIRDMSLLTTPPEGRLPIETVIQQFDPNLVATAIRKELDREGQIFYLHNRI 818
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ LE LQ+ P + I +AH S +LE+ E+F Q ++L+ T I+E+G+D+ N
Sbjct: 819 ENLESVKCMLQKLVPELSICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPN 878
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
ANTII+ +G++QLYQLRGRVGR+DK+A+AYL Y LSD A++RL + + +L
Sbjct: 879 ANTIIIDRADMYGVSQLYQLRGRVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDL 938
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 682
G GF++A KDM IRG G + G++Q+GD+ +VG DL+ ++L E++ ++ +H ++V
Sbjct: 939 GAGFKVALKDMEIRGVGNLLGKEQSGDIYSVGFDLYVQLLEEAIERL-QHAPNEQRIETV 997
Query: 683 QIDININPRLPSEYINHLENPMEM 706
ID+N +P YI E ME+
Sbjct: 998 -IDLNYRGFIPHTYIAADEIKMEL 1020
>gi|257057197|ref|YP_003135029.1| transcription-repair coupling factor Mfd [Saccharomonospora viridis
DSM 43017]
gi|256587069|gb|ACU98202.1| transcription-repair coupling factor Mfd [Saccharomonospora viridis
DSM 43017]
Length = 1199
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 274/730 (37%), Positives = 408/730 (55%), Gaps = 53/730 (7%)
Query: 129 GAGAGAGDSGYNGAGGFSYK----VDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVP 184
G GA AG S + + VDP +L+SGDYVVH + GIG+FV + +T
Sbjct: 481 GRGATAGRSNVDLNTKMPSRRRNAVDPLALKSGDYVVHDQHGIGRFVEMVRRTVGGATR- 539
Query: 185 IEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKR-----PRTLSKLSDTTAWERRKTKG 239
EY+ IEYA P R+ + +E R TL+K+ W++ K +
Sbjct: 540 -EYLVIEYAPSKRGHP---GDRLFVPTDQLDEVSRYVGGETPTLNKMGGAD-WKKTKARA 594
Query: 240 KVAIQKMVVDLMELYLHRLKQKRPPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERD 296
+ A++++ +L++LY R Q P + P P E FP+ T DQ A +V+RD
Sbjct: 595 RKAVKEIAAELVQLYAAR--QAAPGHAFSPDTPWQRELEDAFPFTETADQLAAIDEVKRD 652
Query: 297 LTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFS 356
+ ER+ PMDR+ICGDVG+GKTE+A+RA F V GKQ +VL PT +LA+QH SER
Sbjct: 653 M-ERDVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTILAQQHLATFSERMR 711
Query: 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQR 416
+P + + LSRF E E+ ++ + G ++I++GTH LL S V Y +LGL++VDEEQR
Sbjct: 712 SFP-VTIKGLSRFTDPHEAEQVINGLADGEVDIVIGTHRLLQSNVRYKDLGLVIVDEEQR 770
Query: 417 FGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAF 476
FGV+ KE I + + VDVLT+SATPIPRTL +++ G R+ S I TPP +R PI T++ A+
Sbjct: 771 FGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAY 830
Query: 477 SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEET 536
++V +AI+ EL R GQVFYV R+ +E L++ P + AHGQ +LE+
Sbjct: 831 DDKQVAAAIRRELLRDGQVFYVHNRVSSIERAARRLRELVPEARVVTAHGQMNEHRLEQI 890
Query: 537 MEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAY 596
++ F + +L+CT IVE+GLDI NANT+IV+ Q GLAQL+QLRGRVGR + +AY
Sbjct: 891 IQGFWEREYDVLVCTTIVETGLDISNANTLIVEHADQLGLAQLHQLRGRVGRGRERGYAY 950
Query: 597 LFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVD 656
YP L++ A +RLA + + ELG G +A KD+ IRG G I G +Q+G + VG D
Sbjct: 951 FLYPADKPLTETAHDRLATIAQNTELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFD 1010
Query: 657 LFFEMLFESLSKVDEHC-----VISVPYKSVQIDININPRLPSEYINHLENPMEMVN-EA 710
L+ ++ E++ H V++D+ ++ +P +Y+ P E + EA
Sbjct: 1011 LYVRLVGEAVEAFRRHAGAGEPEEEPTPTEVRVDLPVDAHIPHDYV-----PGERLRLEA 1065
Query: 711 EK--AAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI-------- 760
+ AA D L E L +YGK P +E LL R++ + G+T++
Sbjct: 1066 YRKIAAAPDAEGLDAVREELVDRYGKLPAPVERLLAVAAFRQVCREAGVTEVTLQGNNIR 1125
Query: 761 -----YASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLL 815
A ++V +K + VFK + ++++ V R + G +I A +L + P LL
Sbjct: 1126 FTPLQLADSQLVRLKRLYPRAVFKAVTNTVS--VPRPTEGPAGGRIGAPVLRDEP---LL 1180
Query: 816 NWIFQCLAEL 825
+W + L
Sbjct: 1181 DWCTTLIRSL 1190
>gi|386320880|ref|YP_006017042.1| Transcription-repair coupling factor (superfamily II helicase)
[Riemerella anatipestifer RA-GD]
gi|325335423|gb|ADZ11697.1| Transcription-repair coupling factor (superfamily II helicase)
[Riemerella anatipestifer RA-GD]
Length = 1097
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 244/627 (38%), Positives = 368/627 (58%), Gaps = 27/627 (4%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVF-IEYADGMAKLPVKQASRML 208
D SL+ GDY+ H GIGKF+G+ V+ ++ + F + Y +G A +
Sbjct: 430 DLMSLKVGDYIAHIDHGIGKFMGL---VKVNNGGKTQECFKLTYKNGDLLYVSIHALHKI 486
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PK 267
+YN + TLSK+ + +W+ K K K ++++ DL++LY R K Y P
Sbjct: 487 SKYN--GAEGKEITLSKIG-SPSWKNLKNKTKAKVKQIAFDLIKLYAKRKTAKGFAYTPD 543
Query: 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
E A F YE TPDQ+KA LDV+RD+ E +T MDRL+CGDVGFGKTEVA+RA F
Sbjct: 544 TYLQNELEASFLYEDTPDQEKATLDVKRDM-EADTIMDRLVCGDVGFGKTEVAIRAAFKA 602
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
+ GKQ VL PT +LA QH+ +ER +P + + L+RF++ +K E L+ + G +
Sbjct: 603 ATDGKQVAVLVPTTILAFQHYRSFAERLKDFP-VNISYLNRFRTAKQKRETLEKLAEGKI 661
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+II+GTH L +V + +LGLL++DEE +FGV K+K+ + K ++D LTL+ATPIPRTL
Sbjct: 662 DIIIGTHQLASDKVKFKDLGLLIIDEEHKFGVSVKDKLKTLKANIDTLTLTATPIPRTLQ 721
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+L RD S+I TPPP R P++T L F +E + AI YEL R GQV+++ RI L++
Sbjct: 722 FSLMAARDLSVIKTPPPNRQPVETQLIGFDEEIIRDAISYELQRDGQVYFINNRIDNLKD 781
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+Q+ P + HGQ +QLEE + F +G +L+ T IVESG+D+ NANTI
Sbjct: 782 IAGMIQRLVPDARVITGHGQMDGKQLEENILDFMEGRYDVLVSTTIVESGVDVPNANTIF 841
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ D Q+FG+A ++Q+RGRVGR++++A YL P +++ A +RL A+E+ +LG GFQ
Sbjct: 842 INDAQRFGMADVHQMRGRVGRSNRKAFCYLITPPFDMVTSDARKRLEAIEQFSDLGSGFQ 901
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY-------- 679
+A KD+ IRG G + G +Q+G + +G + + +++ ESL ++ +
Sbjct: 902 IAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKIMQESLEELQNDAEFESLFENEADRKK 961
Query: 680 -----KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYG 733
K V ID ++ LP Y++ E E +N +K AE + L +F L ++G
Sbjct: 962 LFKSSKDVNIDTDLELMLPDSYVSSTE---ERLNLYQKLAEINNKEELKRFEAELEDRFG 1018
Query: 734 KEPYSMEILLKKLYVRRMAADIGITKI 760
P LLK + ++ +AA IG KI
Sbjct: 1019 SLPEEAINLLKSVELKWLAAAIGFEKI 1045
>gi|292493142|ref|YP_003528581.1| transcription-repair coupling factor [Nitrosococcus halophilus Nc4]
gi|291581737|gb|ADE16194.1| transcription-repair coupling factor [Nitrosococcus halophilus Nc4]
Length = 1158
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 240/622 (38%), Positives = 376/622 (60%), Gaps = 17/622 (2%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQAS-RM 207
D L G VVH++ G+G+++G++ +V K T E++ +EYADG KL V +S +
Sbjct: 483 DLVELSIGAPVVHEEHGVGRYLGLQTLEVGKVRT---EFMALEYADG-DKLYVPVSSLHL 538
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK 267
+ RY + P L KL + WER K K + ++ + +L+ +Y R +K+P P
Sbjct: 539 ISRYTGASPEAAP--LHKLG-SGQWERAKRKARERVRDVAAELLAIYAQRAARKKPALPP 595
Query: 268 -NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
+ A FA FP+E TPDQ A V DLT E PMDRL+CGDVGFGKTEVA+RA F
Sbjct: 596 PDSHYAAFARDFPFEETPDQADAIEAVIADLTS-EKPMDRLVCGDVGFGKTEVAMRAAFI 654
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
AGKQ VL PT +LA+QH +RF+ +P ++V ++SRF+S+ E+E ++ I G
Sbjct: 655 ASQAGKQVAVLVPTTLLAQQHHQSFKDRFADWP-VRVEVMSRFRSRKEQETIVNGIADGR 713
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
++I++GTH LL + + +LGL+++DEE RFGV+QKE++ + + VDVLTL+ATPIPRTL
Sbjct: 714 VDIVIGTHKLLQENIHFKDLGLVIIDEEHRFGVRQKERMKALRAEVDVLTLTATPIPRTL 773
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
+++L+G RD S+I+TPP RL IKT + + + A+ E+ RGGQ++++ ++ +E
Sbjct: 774 HMSLSGLRDLSIIATPPARRLAIKTFVRQWDDSLLREALLREIKRGGQIYFLHNEVESIE 833
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
+ +Q FP + +AHGQ R+LE+ M F +L+CT I+E+G+DI +ANTI
Sbjct: 834 KMAHRVQTLFPEAKVGVAHGQMRERELEQVMLNFYHRRFNVLVCTTIIETGIDIPSANTI 893
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
I+ +FGLAQLYQLRGRVGR+ A+AYL P +S+++ A++RL A+E ELG GF
Sbjct: 894 IIHRADKFGLAQLYQLRGRVGRSHHRAYAYLIVPPRSVMTADAVKRLEAIESLEELGAGF 953
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS---VQ 683
LA DM IRG G + G+ Q+G + +G L+ ++L +++ + + + + +
Sbjct: 954 TLATHDMEIRGAGELLGKGQSGQMQEIGFSLYNDLLERAVNSLKSGQTLDLEQPTEHGPE 1013
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D++ +P +Y+ + + + A L + + ++G P + + L
Sbjct: 1014 VDLHAPALIPEDYLPDVHTRLVLYKRIATAKSNQ--ELKELQVEMIDRFGLLPEATKTLF 1071
Query: 744 KKLYVRRMAADIGITKIYASGK 765
+R A++IGI KI AS +
Sbjct: 1072 AIHELRLKASEIGIRKIEASTR 1093
>gi|366054154|ref|ZP_09451876.1| transcription-repair coupling factor [Lactobacillus suebicus KCTC
3549]
Length = 1179
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 244/600 (40%), Positives = 369/600 (61%), Gaps = 16/600 (2%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRMLYRY 211
L+ GDYVVH GIG F GI+ + S V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 496 DLKPGDYVVHVNHGIGIFQGIQ--TMEVSGVRQDYIVINYRDNAQIFVPVNQLN-LVQKY 552
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E+K PR ++KL T W + K K I+ + DL+ELY R +K P+P++ +
Sbjct: 553 -VSSESKTPR-INKLG-GTEWAKTKRKVADKIEDIADDLIELYAQRKAEKGYPFPRDDSY 609
Query: 272 AE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+ F FPY T DQ ++ +++RD+ E E PMDRL+ GDVGFGKTEVALRA F V
Sbjct: 610 QQQFEDDFPYNETRDQLRSSEEIKRDM-ETEKPMDRLLVGDVGFGKTEVALRAAFKAVED 668
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QHFD + RF YP + VGL+SRF++ E + + +K G +I+
Sbjct: 669 GKQVAFLVPTTILAQQHFDTIETRFEGYP-VTVGLMSRFKTTKELRQTENELKDGQCDIV 727
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
VGTH LL V + +LGLL++DEEQRFGVK KE++ K SVDVLTL+ATPIPRTL +++
Sbjct: 728 VGTHRLLSKDVKFKDLGLLIIDEEQRFGVKHKERLKQMKQSVDVLTLTATPIPRTLNMSM 787
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+I TPP R PI+T++ + + I E+ RGGQV+Y+ R+ +E+ +
Sbjct: 788 LGVRDLSVIETPPAGRFPIQTYVMEQNAGALRDGIMREMQRGGQVYYLHNRVMDIEKTVA 847
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q P + HG+ QLE + F +G +L+ T+I+E+G+DI N NT+ V++
Sbjct: 848 QVQSLVPEARVGYIHGRMTEAQLEGVLYDFIRGEYDVLVTTSIIETGVDIPNVNTLFVEN 907
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GLAQLYQ+RGR+GR+D+ A+AY Y +L++ + +RLAA+ + ELG GF++A
Sbjct: 908 ADRMGLAQLYQIRGRIGRSDRVAYAYFMYQQDKVLNEVSEKRLAAIRDFTELGSGFKIAM 967
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G+QQ G + +VG DL+ +ML E+++K V + +I++ +
Sbjct: 968 RDLSIRGAGNLLGKQQHGFIDSVGYDLYSQMLSEAVAKKQGKKVAA--KSDAEIELGLEA 1025
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRR--QYGKEPYS-MEILLKKLY 747
LP YI+ +E+ + + + D MQ ++ + R +YG E + +EI K+Y
Sbjct: 1026 YLPDSYIDDQRQKIELYKQIRQVQDDDQLMEMQ-SDLIDRFGEYGDEVNNLLEIARLKMY 1084
>gi|414082572|ref|YP_006991272.1| transcription-repair coupling factor [Carnobacterium maltaromaticum
LMA28]
gi|412996148|emb|CCO09957.1| transcription-repair coupling factor [Carnobacterium maltaromaticum
LMA28]
Length = 1177
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 246/599 (41%), Positives = 373/599 (62%), Gaps = 27/599 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYRY 211
L GD+VVH GIGK+ G+ + + V +Y+ + Y D AKL PV Q + +L +Y
Sbjct: 498 LNPGDFVVHVNHGIGKYTGM--ETLEIGGVHQDYMSVLYKDD-AKLFIPVTQIN-LLQKY 553
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
+ ++ K P+ ++KL T W + K K I+ + DL+ELY R + + P +P
Sbjct: 554 -VSSDAKTPK-INKLGGT-EWAKTKKKVAAKIEDIADDLIELYAAREAEVGFAFSPDSPY 610
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF FPY T DQ ++ +++ D+ E + PMDRL+ GDVG+GKTEVA+RAIF V
Sbjct: 611 QQEFENAFPYTETDDQLRSTAEIKHDM-ESKKPMDRLLVGDVGYGKTEVAMRAIFKAVQD 669
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQA L PT +LA+QH++ + +RF +P +++GLLSRF++K ++ E +D +K G ++++
Sbjct: 670 GKQAAFLVPTTILAQQHYESLVQRFEDFP-VEIGLLSRFRTKKQQNETMDGLKKGLVDVV 728
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH +L + + +LGLL+VDEEQRFGVK KEK+ K VDVLTL+ATPIPRTL++++
Sbjct: 729 IGTHRILSKDIEFLDLGLLIVDEEQRFGVKHKEKLKQLKAQVDVLTLTATPIPRTLHMSM 788
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+I TPP R P++T++ + + AI+ EL RGGQVFY+ R++ + + ++
Sbjct: 789 LGVRDLSVIETPPANRYPVQTYVMEQNPGAIREAIERELTRGGQVFYLYNRVETIGKKVE 848
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
LQ P IA AHGQ QLE + +F +G +L+ T I+E+G+DI N NT+ V++
Sbjct: 849 ELQMLVPDAKIAYAHGQMTEAQLESILYQFVEGEYDVLVTTTIIETGVDIPNVNTLFVEN 908
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
GL+QLYQLRGRVGR+++ A+AY Y +L++ + +RL A+++ ELG GF++A
Sbjct: 909 ADHMGLSQLYQLRGRVGRSNRVAYAYFMYQPDKVLTEVSEKRLQAIKDFTELGSGFKIAM 968
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFES------LSKVDEHCVISVPYKSVQI 684
+D+ IRG G + G QQ G + +VG DL+ EML E+ L K DE V V+I
Sbjct: 969 RDLSIRGAGNLLGAQQHGFIDSVGFDLYSEMLSEAVVRKRGLEKKDEKTV-------VEI 1021
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ IN LPS YI +E+ + ++D + +Q + L ++G P + LL
Sbjct: 1022 DLGINAYLPSTYIEDERQKIEIYKRIRELTDRDEYTTLQ--DDLIDRFGVFPDEVADLL 1078
>gi|384421868|ref|YP_005631227.1| transcription-repair coupling factor [Treponema pallidum subsp.
pallidum str. Chicago]
gi|291059734|gb|ADD72469.1| transcription-repair coupling factor [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 1155
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 240/564 (42%), Positives = 359/564 (63%), Gaps = 13/564 (2%)
Query: 146 SYKVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQ 203
S +D + L GDYVVH + GIG F GI + K + +YV + YA + +P++Q
Sbjct: 482 STPIDTFVELNPGDYVVHAQYGIGLFKGI--ERIKTAQSERDYVNLLYAQEETILIPIEQ 539
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
A ++ RY + NE +P L L + +WE RK + K +++ + L+ELY R +
Sbjct: 540 A-HLVQRY-IGNEGNKPH-LDSLG-SKSWETRKARVKKSVENIAQKLVELYSLRKTTRGH 595
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+PK+ F A FPYE T DQ+ +V++D+ E PMDRL+CGDVG+GKTE+A+R
Sbjct: 596 AFPKDDEWQYAFEAAFPYEETDDQRICIEEVKQDMQE-AVPMDRLVCGDVGYGKTEIAMR 654
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F V GKQ + L PT +L +QHF + RF +P +++ LSRF K+E+++ L +
Sbjct: 655 AAFKAVMGGKQVVFLTPTTLLVEQHFRTICNRFKHFP-VRIEKLSRFVPKSEQKDILAKL 713
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
HG +++IVGTH L+ V + +LGL+++DEEQRFGV+ KEK+ K +VD L+LSATPI
Sbjct: 714 AHGDIDLIVGTHRLIQKDVSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPI 773
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++ + RD SL++TPP RLPI+T + F V +AI+ ELDR GQ+FY+ RI
Sbjct: 774 PRTLHMGMLKIRDMSLLTTPPEGRLPIETVIQQFDPNLVATAIRKELDREGQIFYLHNRI 833
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ LE LQ+ P + I +AH S +LE+ E+F Q ++L+ T I+E+G+D+ N
Sbjct: 834 ENLESVKCMLQKLVPELSICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPN 893
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
ANTII+ +G++QLYQLRGRVGR+DK+A+AYL Y LSD A++RL + + +L
Sbjct: 894 ANTIIIDRADMYGVSQLYQLRGRVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDL 953
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 682
G GF++A KDM IRG G + G++Q+GD+ +VG DL+ ++L E++ ++ +H ++V
Sbjct: 954 GAGFKVALKDMEIRGVGNLLGKEQSGDIYSVGFDLYVQLLEEAIERL-QHAPNEQRIETV 1012
Query: 683 QIDININPRLPSEYINHLENPMEM 706
ID+N +P YI E ME+
Sbjct: 1013 -IDLNYRGFIPHTYIAADEIKMEL 1035
>gi|424779782|ref|ZP_18206674.1| Transcription-repair coupling factor [Catellicoccus marimammalium
M35/04/3]
gi|422843532|gb|EKU27962.1| Transcription-repair coupling factor [Catellicoccus marimammalium
M35/04/3]
Length = 1155
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 237/609 (38%), Positives = 381/609 (62%), Gaps = 14/609 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYAD-GMAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG+++G++ +++D + +Y+ I+Y + +PV Q + + +
Sbjct: 481 LKVGDYVVHINHGIGQYLGLE-TIERDG-IHQDYLKIQYQNEDQLFIPVDQLNCIQKYVS 538
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
L N+T + L++L D W + K K + ++ M +L+ELY R +K + K+ +
Sbjct: 539 LENKTPK---LNRL-DNKTWHKTKHKVERQVEDMADELIELYAQRQLEKGFAFSKDDEVQ 594
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F QFPY T DQ ++ +++ D+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 595 RKFEDQFPYAETEDQLRSTREIKADM-EKEQPMDRLLVGDVGYGKTEVALRAAFKAIRDH 653
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH+ + +R +P KVG+L+RF+SK E++E L+ + G ++IIV
Sbjct: 654 KQVAFLVPTTILAEQHYTTIMKRLRDFP-YKVGILNRFKSKKEQKEILNELAEGTIDIIV 712
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V++++LGL+++DEEQRFGV+ KE++ K VDVLTL+ATPIPRTL++++
Sbjct: 713 GTHRLLSKDVIFHDLGLIIIDEEQRFGVRHKERLKQLKTKVDVLTLTATPIPRTLHMSMM 772
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ TPP R P++T++ ++ E V AI+ E+ RGGQVFY+ +++ + E +
Sbjct: 773 GVRDLSVLETPPMNRYPVQTYVLEYNLEVVRDAIEREVARGGQVFYLFNQVETMPEKLQE 832
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQQ P + AHGQ +LE + +F G +LI T I+E+G+D+ N NTIIV
Sbjct: 833 LQQWMPNLRFLCAHGQMQEHELENVLFEFLSGNADVLITTTIIETGVDMPNVNTIIVDGA 892
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
++ GL+QLYQL+GRVGR+ + AHAY YP LLS ++ ERL+AL E +LG GF++A +
Sbjct: 893 EKMGLSQLYQLKGRVGRSSRLAHAYFMYPPFKLLSGESEERLSALREFTQLGAGFKIAMR 952
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G I G +Q G + VG DL+ E+L +++++ + + V Y +I +
Sbjct: 953 DLSIRGAGDILGSKQHGFINEVGFDLYNELLQQAVAR--KQGKVEVQYPDTKIHCVCDAY 1010
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
+P++YI +EM + ++ L + T ++G+ P +++ LL + ++
Sbjct: 1011 IPNDYIQSPALKVEMYRRLRCLSSKE--ELAEITMDFIDRFGEYPKAVQNLLDMVALKWE 1068
Query: 752 AADIGITKI 760
A+ + KI
Sbjct: 1069 ASHAYVEKI 1077
>gi|392531776|ref|ZP_10278913.1| transcription-repair coupling factor [Carnobacterium maltaromaticum
ATCC 35586]
Length = 1177
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 246/599 (41%), Positives = 373/599 (62%), Gaps = 27/599 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYRY 211
L GD+VVH GIGK+ G+ + + V +Y+ + Y D AKL PV Q + +L +Y
Sbjct: 498 LNPGDFVVHVNHGIGKYTGM--ETLEIGGVHQDYMSVLYKDD-AKLFIPVTQIN-LLQKY 553
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
+ ++ K P+ ++KL T W + K K I+ + DL+ELY R + + P +P
Sbjct: 554 -VSSDAKTPK-INKLGGT-EWAKTKKKVAAKIEDIADDLIELYAAREAEVGFAFSPDSPY 610
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF FPY T DQ ++ +++ D+ E + PMDRL+ GDVG+GKTEVA+RAIF V
Sbjct: 611 QQEFENAFPYTETDDQLRSTAEIKHDM-ESKKPMDRLLVGDVGYGKTEVAMRAIFKAVQD 669
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQA L PT +LA+QH++ + +RF +P +++GLLSRF++K ++ E +D +K G ++++
Sbjct: 670 GKQAAFLVPTTILAQQHYESLVQRFEDFP-VEIGLLSRFRTKKQQNETMDGLKKGLVDVV 728
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH +L + + +LGLL+VDEEQRFGVK KEK+ K VDVLTL+ATPIPRTL++++
Sbjct: 729 IGTHRILSKDIEFLDLGLLIVDEEQRFGVKHKEKLKQLKAQVDVLTLTATPIPRTLHMSM 788
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+I TPP R P++T++ + + AI+ EL RGGQVFY+ R++ + + ++
Sbjct: 789 LGVRDLSVIETPPANRYPVQTYVMEQNPGAIREAIERELTRGGQVFYLYNRVETIGKKVE 848
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
LQ P IA AHGQ QLE + +F +G +L+ T I+E+G+DI N NT+ V++
Sbjct: 849 ELQMLVPDAKIAYAHGQMTEAQLESILYQFVEGEYDVLVTTTIIETGVDIPNVNTLFVEN 908
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
GL+QLYQLRGRVGR+++ A+AY Y +L++ + +RL A+++ ELG GF++A
Sbjct: 909 ADHMGLSQLYQLRGRVGRSNRVAYAYFMYQPDKVLTEVSEKRLQAIKDFTELGSGFKIAM 968
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFES------LSKVDEHCVISVPYKSVQI 684
+D+ IRG G + G QQ G + +VG DL+ EML E+ L K DE V V+I
Sbjct: 969 RDLSIRGAGNLLGAQQHGFIDSVGFDLYSEMLSEAVVRKRGLEKKDEKTV-------VEI 1021
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
D+ IN LPS YI +E+ + ++D + +Q + L ++G P + LL
Sbjct: 1022 DLGINAYLPSTYIEDERQKIEIYKRIRELTDRDEYTTLQ--DDLIDRFGVFPDEVADLL 1078
>gi|379710849|ref|YP_005266054.1| putative transcription-repair coupling factor [Nocardia
cyriacigeorgica GUH-2]
gi|374848348|emb|CCF65420.1| putative transcription-repair coupling factor [Nocardia
cyriacigeorgica GUH-2]
Length = 1459
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/636 (38%), Positives = 371/636 (58%), Gaps = 32/636 (5%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVK----- 202
+VDP +L +GD VVH + GIG+FV + + EY+ IEYA G P
Sbjct: 757 QVDPLALNAGDMVVHDQHGIGRFV--EMIERTVGGARREYLVIEYAPGKRGQPGDRLFVP 814
Query: 203 -QASRMLYRY---NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRL 258
++ L RY +P+ LSKL + W K K + A++++ +L++LY R
Sbjct: 815 MESLDQLSRYVGGEMPS-------LSKLGGSD-WANTKRKARKAVREIAGELVQLYAAR- 865
Query: 259 KQKRPPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFG 315
Q P + P P E F + T DQ A DV+ D+ E+ PMDR++CGDVG+G
Sbjct: 866 -QAAPGHAFGPDTPWQQEMEDAFAFTETVDQMTAITDVKADM-EKPVPMDRVVCGDVGYG 923
Query: 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 375
KTE+A+RA F V GKQ +VL PT +LA+QH +ER + +P + V LSRF AE
Sbjct: 924 KTEIAVRAAFKAVQDGKQVVVLVPTTLLAQQHLQTFTERVAGFP-VTVKGLSRFTDPAES 982
Query: 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVL 435
E L+ + G ++I+VGTH LL + V + +LGL++VDEEQRFGV+ KE I + + VDVL
Sbjct: 983 REVLEGMASGEVDIVVGTHRLLQTGVRWKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVL 1042
Query: 436 TLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQV 495
T+SATPIPRTL ++L G R+ S I TPP ER P+ T++ A+S ++V +AI+ EL R GQV
Sbjct: 1043 TMSATPIPRTLEMSLAGIREMSTILTPPEERHPVLTYVGAYSDKQVTAAIRRELLRDGQV 1102
Query: 496 FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555
FYV R+ +++ ++ P + +AHGQ LE T++ F Q +L+CT I+E
Sbjct: 1103 FYVHNRVSSIDKAAKRIRDLVPEARVVVAHGQMNEDTLESTVQGFWQREFDVLVCTTIIE 1162
Query: 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA 615
+GLDI NANT+IV+ GL+QL+QLRGRVGR+ + +AY YP + L++ A +RLA
Sbjct: 1163 TGLDISNANTLIVERADTLGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTETAYDRLAT 1222
Query: 616 LEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDE 671
+ + +LG G +A KD+ IRG G + G +Q+G V VG DL+ ++ E++ + D
Sbjct: 1223 IAQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRLVGEAVEAYRAAADG 1282
Query: 672 HCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQ 731
+ + K V+ID+ ++ +P +YI + + + + AA D L E L +
Sbjct: 1283 KPITTEETKEVRIDLPVDAHIPPDYIT--SDRLRLEAYRKLAAAHDDSTLAAVVEELVDR 1340
Query: 732 YGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 767
YG P + L+ +R +A + G+T+I +G V
Sbjct: 1341 YGPLPVEVGRLVSVAKLRLLAREYGVTEIAVTGTTV 1376
>gi|257877903|ref|ZP_05657556.1| transcription-repair coupling factor [Enterococcus casseliflavus
EC20]
gi|257812069|gb|EEV40889.1| transcription-repair coupling factor [Enterococcus casseliflavus
EC20]
Length = 1172
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 236/592 (39%), Positives = 372/592 (62%), Gaps = 13/592 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYAD-GMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 496 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNEDKLFIPVTQLN-LIQKY- 551
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E+K P+ ++KL + W + K K I+ + DL+ LY R +K + P +
Sbjct: 552 VASESKTPK-INKLGGS-EWAKTKRKVTAKIEDIADDLILLYAKRESEKGYAFQPDDAYQ 609
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVGFGKTEVALRA F +
Sbjct: 610 KEFEDAFPYSETDDQLRSTAEIKRDM-EKEKPMDRLLVGDVGFGKTEVALRAAFKAIKES 668
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + +RF +P + VG+LSRF++K ++ E ++ ++ G ++I+V
Sbjct: 669 KQVAFLVPTTILAQQHYETMVDRFEGFP-VNVGVLSRFRTKKQQNETIEQVRKGQVDILV 727
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 728 GTHRLLSKDVEFADLGLLVIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSML 787
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + V AI+ E+ RGGQVFY+ R+ +E ++
Sbjct: 788 GVRDLSVIETPPENRYPIQTYVMEMNPGAVREAIQREMARGGQVFYLYNRVDTIERKVEE 847
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQ P IA AHGQ QLE T+ F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 848 LQALVPDARIAYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 907
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 908 DYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKVLNEVSEKRLQAIKDFTELGSGFKIAMR 967
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++++ + +V+ID+ I+
Sbjct: 968 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVTR-KQGKNTQTEKTTVEIDLGIDAY 1026
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
LP+ YI +E+ + Q+ + + + L ++G+ P + LL
Sbjct: 1027 LPTSYIEDERQKIEIYKRIRELESQE--AVDELQDDLLDRFGEYPVEVAHLL 1076
>gi|397666634|ref|YP_006508171.1| transcription-repair coupling factor [Legionella pneumophila subsp.
pneumophila]
gi|395130045|emb|CCD08278.1| transcription-repair coupling factor [Legionella pneumophila subsp.
pneumophila]
Length = 1153
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 257/656 (39%), Positives = 384/656 (58%), Gaps = 16/656 (2%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRML 208
D LR G VVH + G+G++ G+++ + + T P E++ + YA D +PV + M+
Sbjct: 476 DMAELRLGAPVVHLQFGVGRYQGLQY-IDSNGT-PSEFLVLAYAGDDKIYVPVT-SLHMI 532
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
RY + P L KL + W++ K K I + ++L++LY R Q Y N
Sbjct: 533 SRYTGVDSEHAP--LHKLG-SDQWQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFN 589
Query: 269 PA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
+ +FA+ FP+ TPDQ +A + RD+ + PMDRLICGDVGFGKTEVA+RA F
Sbjct: 590 QSEYIKFASGFPFTETPDQLQAIEQIIRDM-QSPRPMDRLICGDVGFGKTEVAMRAAFVA 648
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V GKQ +LAPT +LA QHF+ +RF+++P + + LLSRF+S E E L ++ G +
Sbjct: 649 VQNGKQVCILAPTTLLAGQHFESFRDRFAEFP-VNIELLSRFRSNKESEAVLAALQSGKV 707
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH L + + + NLGLL++DEE RFGVKQKE I S + VD+L+++ATPIPRTL
Sbjct: 708 DIVIGTHKLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLN 767
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+A+ G RD SLI+TPP +RL IKT + + AI E+ RGGQVFY+ ++ +E
Sbjct: 768 MAMAGIRDISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYLHNNVQTIER 827
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
L+ P I AHGQ RQLE M F +L+CT I+E+G+DI ANTII
Sbjct: 828 VCQDLEALVPEAKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTANTII 887
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ +FGLAQL+QLRGRVGR+ +A+AYL P++ LL+ A++RL A+ +LG GF
Sbjct: 888 IDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFT 947
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVP-YKSVQI 684
LA D+ IRG G + GE+Q+G++ +G +LF EML +++ K + +S P ++ +I
Sbjct: 948 LATHDLEIRGAGELLGEEQSGNMHAIGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEI 1007
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+ I+ +P +YI + N + M A + L + L ++G P ++ L
Sbjct: 1008 DLRISAIIPEDYIGDIHNRLIMYKRIANA--KTTQQLRELQIELIDRFGLLPQPVKHLFL 1065
Query: 745 KLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 800
++ AA +GI KI AS + + + + + S+ +VH EG Q
Sbjct: 1066 ITELKLKAAQLGIQKISASAQQGKLDFSEKPSIDPGTLISLI-QVHAKRYQMEGPQ 1120
>gi|416111695|ref|ZP_11592792.1| transcription-repair coupling factor [Riemerella anatipestifer RA-YM]
gi|315022463|gb|EFT35490.1| transcription-repair coupling factor [Riemerella anatipestifer RA-YM]
Length = 1096
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 244/627 (38%), Positives = 368/627 (58%), Gaps = 27/627 (4%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVF-IEYADGMAKLPVKQASRML 208
D SL+ GDY+ H GIGKF+G+ V+ ++ + F + Y +G A +
Sbjct: 407 DLMSLKVGDYIAHIDHGIGKFMGL---VKVNNGGKTQECFKLTYKNGDLLYVSIHALHKI 463
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PK 267
+YN + TLSK+ + +W+ K K K ++++ DL++LY R K Y P
Sbjct: 464 SKYN--GAEGKEITLSKIG-SPSWKNLKNKTKAKVKQIAFDLIKLYAKRKTAKGFAYTPD 520
Query: 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
E A F YE TPDQ+KA LDV+RD+ E +T MDRL+CGDVGFGKTEVA+RA F
Sbjct: 521 TYLQNELEASFLYEDTPDQEKATLDVKRDM-EADTIMDRLVCGDVGFGKTEVAIRAAFKA 579
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
+ GKQ VL PT +LA QH+ +ER +P + + L+RF++ +K E L+ + G +
Sbjct: 580 ATDGKQVAVLVPTTILAFQHYRSFAERLKDFP-VNISYLNRFRTAKQKRETLEKLAEGKI 638
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+II+GTH L +V + +LGLL++DEE +FGV K+K+ + K ++D LTL+ATPIPRTL
Sbjct: 639 DIIIGTHQLASDKVKFKDLGLLIIDEEHKFGVSVKDKLKTLKANIDTLTLTATPIPRTLQ 698
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+L RD S+I TPPP R P++T L F +E + AI YEL R GQV+++ RI L++
Sbjct: 699 FSLMAARDLSVIKTPPPNRQPVETQLIGFDEEIIRDAISYELQRDGQVYFINNRIDNLKD 758
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+Q+ P + HGQ +QLEE + F +G +L+ T IVESG+D+ NANTI
Sbjct: 759 IAGMIQRLVPDARVITGHGQMDGKQLEENILDFMEGRYDVLVSTTIVESGVDVPNANTIF 818
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ D Q+FG+A ++Q+RGRVGR++++A YL P +++ A +RL A+E+ +LG GFQ
Sbjct: 819 INDAQRFGMADVHQMRGRVGRSNRKAFCYLITPPFDMVTSDARKRLEAIEQFSDLGSGFQ 878
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY-------- 679
+A KD+ IRG G + G +Q+G + +G + + +++ ESL ++ +
Sbjct: 879 IAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKIMQESLEELQNDAEFESLFENEADRKK 938
Query: 680 -----KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYG 733
K V ID ++ LP Y++ E E +N +K AE + L +F L ++G
Sbjct: 939 LFKSSKDVNIDTDLELMLPDSYVSSTE---ERLNLYQKLAEINNKEELKRFEAELEDRFG 995
Query: 734 KEPYSMEILLKKLYVRRMAADIGITKI 760
P LLK + ++ +AA IG KI
Sbjct: 996 SLPEEAINLLKSVELKWLAAAIGFEKI 1022
>gi|307244035|ref|ZP_07526154.1| transcription-repair coupling factor [Peptostreptococcus stomatis DSM
17678]
gi|306492559|gb|EFM64593.1| transcription-repair coupling factor [Peptostreptococcus stomatis DSM
17678]
Length = 1134
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 240/621 (38%), Positives = 381/621 (61%), Gaps = 18/621 (2%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYR 210
L+ GDYVVH+ G+GK+ GI + V + + +Y+ I Y G +P+ Q + + +
Sbjct: 492 DLKVGDYVVHENSGVGKYTGIEQITV---NNIKRDYLKIVYQGGDNLYVPIDQMDK-VQK 547
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA 270
Y + + +R + L+KL + W + K + K I+ M +L++LY R +K + K+
Sbjct: 548 Y-IGGDVERVK-LNKLG-SHDWSKAKHRVKKEIEDMTKELIDLYAKREARKGYKFSKDTI 604
Query: 271 I-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF +FP++ T DQ KA D ++D+ E MDRLICGDVG+GKTEVA+RAIF V
Sbjct: 605 WQGEFEEKFPFQETDDQLKAIKDTKKDM-ESSKAMDRLICGDVGYGKTEVAIRAIFKAVM 663
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQ VL PT +LA+QH++ ERF +YP ++V +LSRF++ ++++ + K G +++
Sbjct: 664 DGKQVAVLVPTTILAQQHYNTFVERFEEYP-MRVEVLSRFKTAKQQKDIIKDAKKGLVDV 722
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH ++ + LGL+VVDEEQRFGV+ KE + K +VDVLTLSATPIPRTL+++
Sbjct: 723 LIGTHRIVSKDIDMPKLGLVVVDEEQRFGVRHKESLKKMKANVDVLTLSATPIPRTLHMS 782
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
L+G RD S+I PP ER P+ T+++ + I+ EL R GQVF+V R++G++E
Sbjct: 783 LSGIRDMSIIEEPPQERYPVMTYVTEAKDSIIQDEIQRELTRAGQVFFVYNRVEGIDEMA 842
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+++ P + +AHG+ S QLE T+ F +L+CT I+E+G+DI NANT+I+
Sbjct: 843 ARIRRLVPDAKVGVAHGRMSSNQLENTILSFLSKEFDVLVCTTIIETGMDIANANTMIIY 902
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GL+QLYQLRGRVGR+ ++ +AYL Y +LS+ A +RL A++E E G GF++A
Sbjct: 903 DADKMGLSQLYQLRGRVGRSTRQGYAYLMYERNKVLSEVAEKRLKAIKEFTEFGSGFKVA 962
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G + G QQ G + +G +L+ +ML ++++KV V V+ID+ +N
Sbjct: 963 MRDLEIRGAGDVLGAQQHGHMAVIGYELYVKMLNQAIAKVKGQEVEESL--DVEIDLTVN 1020
Query: 690 PRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+PS YI +EM + A +++D++ + E L ++ P + LLK Y
Sbjct: 1021 AFIPSSYIEDEMIKLEMYKKIAAIDSKEDMY---EVEEELEDRFSDIPRETQTLLKIAYA 1077
Query: 749 RRMAADIGITKIYASGKMVGM 769
+ + + I K+ +G + +
Sbjct: 1078 KVLCRKLKIEKVKQTGSTIDL 1098
>gi|268608427|ref|ZP_06142154.1| transcription-repair coupling factor [Ruminococcus flavefaciens FD-1]
Length = 1160
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 246/617 (39%), Positives = 374/617 (60%), Gaps = 29/617 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYR 210
+ GD VVH GIG+F+GI K +++ V +Y+ I+YA G KL PV Q M+ +
Sbjct: 488 ITEGDLVVHSGHGIGRFIGIRKLELEG---VTKDYITIQYA-GTDKLYIPVTQLD-MVSK 542
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP-YPKNP 269
Y P + + L+KLS + W++ + K A++ M +L+ LY R K YP +
Sbjct: 543 YIGPRDDSGVK-LNKLS-SNEWQKTRNNVKHAVKDMAHELIALYAKREKSVGFAFYPDDE 600
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
+F +FPY T DQ ++ +++ D+ ER PM+RL+CGDVGFGKTEVALRA V
Sbjct: 601 IQRDFEERFPYVETDDQLQSISEIKADM-ERARPMERLLCGDVGFGKTEVALRAAMKCVL 659
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
AGKQ +LAPT VLA QH+ RF +P +KV LLSR++S ++EE + +K G ++I
Sbjct: 660 AGKQCAILAPTTVLAWQHYQTALRRFEHFP-VKVELLSRYRSPKQQEEIIKKLKQGRIDI 718
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH ++ VV+ +LGL ++DEEQRFGV KEK VDVL LSATPIPRTL +A
Sbjct: 719 LIGTHKIIQKSVVFKDLGLAIIDEEQRFGVAHKEKFKESFTGVDVLMLSATPIPRTLNMA 778
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
++G RD S++ PP +R P++T++ ++ ++ AI EL RGGQV+Y+ R++ ++
Sbjct: 779 MSGIRDMSVLEEPPQDRYPVQTYVIEYNIGTIVQAIVRELRRGGQVYYIHNRVETIQACA 838
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
LQQ P IA AHGQ Q+ + E+ + I ILICT I+E+G+D+ N NT+I++
Sbjct: 839 AKLQQLLPEARIAYAHGQMSEDQMSDIWEQLVEHEIDILICTTIIETGVDVPNVNTLIIE 898
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D +FGL+QLYQLRGRVGR+++ +AY Y +L++ A +RL A+ E + G GF++A
Sbjct: 899 DSDRFGLSQLYQLRGRVGRSNRRGYAYFTYQRDKVLTEVATKRLNAMREFTQFGSGFRIA 958
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G+I G +Q G + VG D++ ++L E++++ +P +DI I+
Sbjct: 959 LRDLEIRGAGSILGGRQHGHMEAVGYDMYLKLLSEAIAEEKGEIPEKIP--ECLVDIQID 1016
Query: 690 PRLPSEYINHLENPMEM------VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+P YI+ L ++M VNE + + L +YG+ P S+ L+
Sbjct: 1017 AHIPETYISSLNQRIDMYRKIMLVNEDNDKTD--------LIDELIDRYGEPPKSVLGLI 1068
Query: 744 KKLYVRRMAADIGITKI 760
+ +R AA +GIT+I
Sbjct: 1069 EVSLLRNKAAHLGITEI 1085
>gi|152973901|ref|YP_001373418.1| transcription-repair coupling factor [Bacillus cytotoxicus NVH
391-98]
gi|152022653|gb|ABS20423.1| transcription-repair coupling factor [Bacillus cytotoxicus NVH
391-98]
Length = 1176
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 238/609 (39%), Positives = 379/609 (62%), Gaps = 16/609 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKY-QGNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FTPDTAEQREFESSFPYQETEDQLRSIEEIKKDM-ERSRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ E+ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKEQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANIDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALIREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPEARVTYAHGKMNESELESVMLSFLEGQYDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + I V+
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRKGKQGIENTI-DVE 1022
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ ++ LP YI+ + + M + + + + + E + ++G P + LL
Sbjct: 1023 IDLEVDAYLPDSYISDSKQKIMMYKQFRGVS--TLEDIEELQEEMIDRFGDYPQEVGYLL 1080
Query: 744 KKLYVRRMA 752
+ ++ +A
Sbjct: 1081 QIANIKVLA 1089
>gi|54296975|ref|YP_123344.1| transcription-repair coupling factor [Legionella pneumophila str.
Paris]
gi|53750760|emb|CAH12167.1| Transcription-repair coupling factor [Legionella pneumophila str.
Paris]
Length = 1153
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 251/621 (40%), Positives = 372/621 (59%), Gaps = 15/621 (2%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRML 208
D LR G VVH + G+G++ G+++ + + T P E++ + YA D +PV + M+
Sbjct: 476 DMAELRLGAPVVHLQFGVGRYQGLQY-IDSNGT-PSEFLVLAYAGDDKIYVPVT-SLHMI 532
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
RY + P L KL + W++ K K I + ++L++LY R Q Y N
Sbjct: 533 SRYTGVDSEHAP--LHKLG-SDQWQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFN 589
Query: 269 PA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
+ +FA+ FP+ TPDQ +A + RD+ + PMDRLICGDVGFGKTEVA+RA F
Sbjct: 590 QSEYIKFASGFPFTETPDQLQAIEQIIRDM-QSPRPMDRLICGDVGFGKTEVAMRAAFVA 648
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V GKQ +LAPT +LA QHF+ +RF+++P + + LLSRF+S E E L ++ G +
Sbjct: 649 VQNGKQVCILAPTTLLAGQHFESFRDRFAEFP-VNIELLSRFRSNKESEAVLAALQSGKV 707
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH L + + + NLGLL++DEE RFGVKQKE I S + VD+L+++ATPIPRTL
Sbjct: 708 DIVIGTHKLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLN 767
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+A+ G RD SLI+TPP +RL IKT + + AI E+ RGGQVFY+ ++ +E
Sbjct: 768 MAMAGIRDISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYLHNNVQTIER 827
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
L+ P I AHGQ RQLE M F +L+CT I+E+G+DI ANTII
Sbjct: 828 VCQDLEALVPEAKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTANTII 887
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ +FGLAQL+QLRGRVGR+ +A+AYL P++ LL+ A++RL A+ +LG GF
Sbjct: 888 IDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFT 947
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVP-YKSVQI 684
LA D+ IRG G + GE+Q+G++ +G +LF EML +++ K + +S P ++ +I
Sbjct: 948 LATHDLEIRGAGELLGEEQSGNMHAIGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEI 1007
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+ I+ +P +YI + N + M A + L + L ++G P ++ L
Sbjct: 1008 DLRISAIIPEDYIGDIHNRLIMYKRIANA--KTTQQLRELQIELIDRFGLLPQPVKHLFL 1065
Query: 745 KLYVRRMAADIGITKIYASGK 765
++ AA +GI KI AS +
Sbjct: 1066 ITELKLKAAQLGIQKISASAQ 1086
>gi|148360394|ref|YP_001251601.1| transcription repair coupling factor [Legionella pneumophila str.
Corby]
gi|296106539|ref|YP_003618239.1| transcription-repair coupling factor [Legionella pneumophila 2300/99
Alcoy]
gi|148282167|gb|ABQ56255.1| transcription repair coupling factor [Legionella pneumophila str.
Corby]
gi|295648440|gb|ADG24287.1| transcription-repair coupling factor (superfamily II helicase)
[Legionella pneumophila 2300/99 Alcoy]
Length = 1153
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 257/656 (39%), Positives = 384/656 (58%), Gaps = 16/656 (2%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRML 208
D LR G VVH + G+G++ G+++ + + T P E++ + YA D +PV + M+
Sbjct: 476 DMAELRLGAPVVHLQFGVGRYQGLQY-IDSNGT-PSEFLVLAYAGDDKIYVPVT-SLHMI 532
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
RY + P L KL + W++ K K I + ++L++LY R Q Y N
Sbjct: 533 SRYTGVDSEHAP--LHKLG-SDQWQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFN 589
Query: 269 PA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
+ +FA+ FP+ TPDQ +A + RD+ + PMDRLICGDVGFGKTEVA+RA F
Sbjct: 590 QSEYIKFASGFPFTETPDQLQAIEQIIRDM-QSPRPMDRLICGDVGFGKTEVAMRAAFVA 648
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V GKQ +LAPT +LA QHF+ +RF+++P + + LLSRF+S E E L ++ G +
Sbjct: 649 VQNGKQVCILAPTTLLAGQHFESFRDRFAEFP-VNIELLSRFRSNKESEAVLAALQSGKV 707
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH L + + + NLGLL++DEE RFGVKQKE I S + VD+L+++ATPIPRTL
Sbjct: 708 DIVIGTHKLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLN 767
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+A+ G RD SLI+TPP +RL IKT + + AI E+ RGGQVFY+ ++ +E
Sbjct: 768 MAMAGIRDISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYLHNNVQTIER 827
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
L+ P I AHGQ RQLE M F +L+CT I+E+G+DI ANTII
Sbjct: 828 VCQDLEALVPEAKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTANTII 887
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ +FGLAQL+QLRGRVGR+ +A+AYL P++ LL+ A++RL A+ +LG GF
Sbjct: 888 IDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFT 947
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVP-YKSVQI 684
LA D+ IRG G + GE+Q+G++ +G +LF EML +++ K + +S P ++ +I
Sbjct: 948 LATHDLEIRGAGELLGEEQSGNMHAIGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEI 1007
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+ I+ +P +YI + N + M A + L + L ++G P ++ L
Sbjct: 1008 DLRISAIIPEDYIGDIHNRLIMYKRIANA--KTTQQLRELQIELIDRFGLLPQPVKHLFL 1065
Query: 745 KLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 800
++ AA +GI KI AS + + + + + S+ +VH EG Q
Sbjct: 1066 ITELKLKAAQLGIQKISASAQQGKLDFSEKPSIDPGTLISLI-QVHAKRYQMEGPQ 1120
>gi|325568171|ref|ZP_08144612.1| transcription-repair coupling factor [Enterococcus casseliflavus ATCC
12755]
gi|420263436|ref|ZP_14766073.1| transcription-repair coupling factor [Enterococcus sp. C1]
gi|325158372|gb|EGC70523.1| transcription-repair coupling factor [Enterococcus casseliflavus ATCC
12755]
gi|394769393|gb|EJF49249.1| transcription-repair coupling factor [Enterococcus sp. C1]
Length = 1172
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 236/592 (39%), Positives = 372/592 (62%), Gaps = 13/592 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYAD-GMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 496 LKTGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNEDKLFIPVTQLN-LIQKY- 551
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E+K P+ ++KL + W + K K I+ + DL+ LY R +K + P +
Sbjct: 552 VASESKTPK-INKLGGS-EWAKTKRKVTAKIEDIADDLILLYAKRESEKGYAFQPDDAYQ 609
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVGFGKTEVALRA F +
Sbjct: 610 KEFEDAFPYSETDDQLRSTAEIKRDM-EKEKPMDRLLVGDVGFGKTEVALRAAFKAIKES 668
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + +RF +P + VG+LSRF++K ++ E ++ ++ G ++I+V
Sbjct: 669 KQVAFLVPTTILAQQHYETMVDRFEGFP-VNVGVLSRFRTKKQQNETIEQVRKGQVDILV 727
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 728 GTHRLLSKDVEFADLGLLVIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSML 787
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + V AI+ E+ RGGQVFY+ R+ +E ++
Sbjct: 788 GVRDLSVIETPPENRYPIQTYVMEMNPGAVREAIQREMARGGQVFYLYNRVDTIERKVEE 847
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQ P IA AHGQ QLE T+ F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 848 LQALVPDARIAYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 907
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 908 DYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKVLNEVSEKRLQAIKDFTELGSGFKIAMR 967
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++++ + +V+ID+ I+
Sbjct: 968 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVTR-KQGKNTQTEKTTVEIDLGIDAY 1026
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
LP+ YI +E+ + Q+ + + + L ++G+ P + LL
Sbjct: 1027 LPTSYIEDERQKIEIYKRIRELESQE--AVDELQDDLLDRFGEYPVEVAHLL 1076
>gi|376263009|ref|YP_005149729.1| transcription-repair coupling factor Mfd [Clostridium sp. BNL1100]
gi|373947003|gb|AEY67924.1| transcription-repair coupling factor Mfd [Clostridium sp. BNL1100]
Length = 1174
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 239/617 (38%), Positives = 388/617 (62%), Gaps = 16/617 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADG-MAKLPVKQA 204
K+ +S L GD+VVH+ GIG+++GI K V V +Y+ I Y +G +P Q
Sbjct: 497 KIKAFSDLNVGDFVVHQAHGIGQYIGIEKLSV---GEVKRDYLKIRYQEGDFLYIPTNQL 553
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+L +Y + +E K PR +++L T W + K++ K ++Q++ +L++LY R K
Sbjct: 554 D-LLQKY-IGSEGKTPR-VNRLG-GTEWAKTKSRVKESLQQLAAELIKLYAQRQSAKGHA 609
Query: 265 YPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ ++ +F FPY+ T DQ K +++RD+ E E MDRL+CGDVG+GKTEVA+RA
Sbjct: 610 FCEDTVWQRQFEELFPYQETDDQLKCIDEIKRDM-ESERLMDRLLCGDVGYGKTEVAIRA 668
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
+F V GKQ LAPT +LA+Q ++ +R S +P + V ++SRF++ E+++ + +K
Sbjct: 669 VFKSVMDGKQVAYLAPTTILAQQLYENFKKRMSDFP-VTVDVMSRFRTPTEQKKIVKSVK 727
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G+ +I++GTH LL + + +LGLLVVDEEQRFGV KEK+ + K +VDVLTL+ATPIP
Sbjct: 728 AGNTDILIGTHRLLQKDIEFKDLGLLVVDEEQRFGVTHKEKLKTLKPNVDVLTLTATPIP 787
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL+++L G RD S++ PP ER P++T++ ++ E + I E+ R GQVFY+ R++
Sbjct: 788 RTLHMSLVGIRDISVLEDPPEERYPVQTYVMEYNMELIRDGIIREMARNGQVFYMYNRVR 847
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G++ ++ P +A+AHGQ ++LE+ M F G +L+CT I+ESGLD+ N
Sbjct: 848 GIDIKAQEIRTMIPEARVAVAHGQMNEKELEDVMYGFINGEYDVLVCTTIIESGLDMPNV 907
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTIIV+D + GL+QLYQ+RGRVGR+++ A+AY+ Y +LS+ A +RL A++E E G
Sbjct: 908 NTIIVEDADRMGLSQLYQIRGRVGRSNRLAYAYITYKKDKVLSEVAEKRLQAIKEFTEFG 967
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G +Q G + VG +++ ++L E++ ++ V + + +
Sbjct: 968 SGFRIAMRDLEIRGAGNLLGPEQHGHLETVGYEMYCKLLDEAVQELSGKEVRTTD-EEMA 1026
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N+N + EYI+ E ++M + AA Q+ ++ + L +YG P +E L+
Sbjct: 1027 VDLNVNAYIDDEYISSEEQKIDMYKKI--AAIQNENDVIDLRDELIDRYGDIPEEVENLM 1084
Query: 744 KKLYVRRMAADIGITKI 760
Y++ +A + G I
Sbjct: 1085 DIAYIKALAVECGFIGI 1101
>gi|256545180|ref|ZP_05472546.1| transcription-repair coupling factor - superfamily II helicase
[Anaerococcus vaginalis ATCC 51170]
gi|256399221|gb|EEU12832.1| transcription-repair coupling factor - superfamily II helicase
[Anaerococcus vaginalis ATCC 51170]
Length = 1164
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 246/648 (37%), Positives = 385/648 (59%), Gaps = 17/648 (2%)
Query: 157 GDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRMLYRYNLP 214
GDYVVH+ GIG + GI K +V + +Y IEY + +PV Q ++ +Y +
Sbjct: 500 GDYVVHENNGIGIYKGISKIEV---NNTKKDYFVIEYKGNDKVFVPVDQMG-LVSKY-IG 554
Query: 215 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 273
N+ +P+ +S L + W++ K + K A+ ++ DL+ELY R K K + ++ E
Sbjct: 555 NKGDKPK-ISSLG-SNQWKKAKQRAKKAVDEIADDLVELYAKRSKAKGHAFSEDTTWQKE 612
Query: 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 333
F F YE T Q ++ +++ D+ E PMDRL+CGDVG+GKTEVALRA F + G Q
Sbjct: 613 FEDSFIYEETDSQVRSINEIKDDM-ENIKPMDRLLCGDVGYGKTEVALRAAFKAIMDGYQ 671
Query: 334 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 393
L PT +LA QH+ + ERF YP ++ LLSRF SK E+++++ +K G ++IIVGT
Sbjct: 672 VCFLVPTTILASQHYSTMKERFKDYP-VECALLSRFVSKKEQDKNIKNLKSGKIDIIVGT 730
Query: 394 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 453
H LL + + + NLGLL++DEEQRFGV+ K+K+ K ++DVLTLSATPIPRTL L+LTG
Sbjct: 731 HRLLSNDIKFKNLGLLIIDEEQRFGVRHKDKLKKLKENIDVLTLSATPIPRTLQLSLTGI 790
Query: 454 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 513
RD S + PP RLP+ T++ + + AI+ ELDR GQV++V R+ +E+ + L
Sbjct: 791 RDMSTLDEPPERRLPVNTYVLEYDSSIIKRAIEKELDRDGQVYFVYNRVYNIEKIYNELV 850
Query: 514 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 573
+ P +IAIAHGQ ++ LE+ ME F G I IL+ T I+E+G+DIQN NTIIV D
Sbjct: 851 ELIPDANIAIAHGQMSAKNLEKIMEDFVNGDIDILLATTIIETGMDIQNVNTIIVYDSDM 910
Query: 574 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 633
GL+QLYQL+GR+GR+ + ++AY Y +L++ +RL ++++ + G G+++A +D+
Sbjct: 911 MGLSQLYQLKGRIGRSSRSSYAYFTYAKGKVLTEIGEKRLKSIKDFSDFGSGYKIAMRDL 970
Query: 634 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLP 693
+RG G I GE Q+G V +G DL+ + L ++++K S V ID+ ++ +P
Sbjct: 971 ELRGAGNILGESQSGQVEAIGYDLYVKFLQQAVNKASGKEFKSSDLNDVYIDLKVDAYIP 1030
Query: 694 SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAA 753
YI +EM + + + + E L +YG P ++ ++ V+ +A
Sbjct: 1031 ESYIEDQGQKIEMYTRISRIETLEDYSFL--VEDLIDRYGDIPLMVDNIMYVSLVKSLAD 1088
Query: 754 DIGITKIY-ASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 800
+G +I +++ + NK F+ + S +E + L+F+ Q
Sbjct: 1089 KLGFDEIREVKNEIIISYDDRNKFTFEQL--SQINENYHGELSFDLSQ 1134
>gi|332685798|ref|YP_004455572.1| transcription-repair coupling factor [Melissococcus plutonius ATCC
35311]
gi|332369807|dbj|BAK20763.1| transcription-repair coupling factor [Melissococcus plutonius ATCC
35311]
Length = 1181
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 249/680 (36%), Positives = 408/680 (60%), Gaps = 27/680 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L+ GDYVVH GIGK++G++ ++ D + +Y+ I Y D +PV Q + L +
Sbjct: 497 LKVGDYVVHANHGIGKYIGME-TLEVDG-IHQDYITILYQNDDKLFIPVTQLN--LIQKF 552
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+ +E K P+ ++KL + W + K K I+ + DL++LY R +K +P + A
Sbjct: 553 VASEAKAPK-INKLGGS-EWNKTKQKVSTKIEDIADDLIQLYAAREAEKGFAFPPDDAYQ 610
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++ D+ E+ PMDRL+ GDVG+GKTEVALRA F ++
Sbjct: 611 KEFEDAFPYTETDDQLRSAAEIKHDM-EKIRPMDRLLVGDVGYGKTEVALRAAFKAIACH 669
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ + L PT +LA+QH++ + +RF+ +P ++VGLLSRF++K ++ E + IKHG ++I+V
Sbjct: 670 KQVVFLVPTTILAQQHYETMIDRFADFP-VEVGLLSRFRTKKQQNETIQKIKHGQIDIVV 728
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 729 GTHRLLSKDITFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 788
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + I+ EL RGGQ+FY+ R++ +E+ ++
Sbjct: 789 GVRDLSVIETPPANRYPIQTYIMENNLGAIREGIERELARGGQIFYLYNRVETIEKKVEE 848
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
++ P +A AHGQ +LE T+ F + IL+ T I+E+G+DI N NT+ V++
Sbjct: 849 IKALVPEARVAYAHGQMTEVKLENTLFDFIEQQYDILVTTTIIETGVDIPNVNTLFVENA 908
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 909 DYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELGSGFKIAMR 968
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + +VG D++ +ML E++S+ + + SV+ID+ I+
Sbjct: 969 DLSIRGAGNLLGAQQHGFIDSVGFDMYTQMLSEAVSR-KQGKTVQDQKTSVEIDLGIDAY 1027
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LP+ YI +E+ + D++ ++ T+ L R +G P + LL ++
Sbjct: 1028 LPTSYITDERQKIEIYKRIRQLENYDMYEELE-TDLLDR-FGSYPDEVAHLLTIGRIKMD 1085
Query: 752 AADIGITKIYASGKMV-------GMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAE 804
I IY ++V G KT +++F + + S F + K
Sbjct: 1086 GDRALIESIYKKQQVVKFTLSKIGTKTYNIEQIFSALSSTQLSA------DFPIENEKMT 1139
Query: 805 LLLELPRE-QLLNWIFQCLA 823
+LL++P+ + W+ + A
Sbjct: 1140 ILLKIPKSMETATWLLEITA 1159
>gi|257868298|ref|ZP_05647951.1| transcription-repair coupling factor [Enterococcus casseliflavus
EC30]
gi|257874429|ref|ZP_05654082.1| transcription-repair coupling factor [Enterococcus casseliflavus
EC10]
gi|257802412|gb|EEV31284.1| transcription-repair coupling factor [Enterococcus casseliflavus
EC30]
gi|257808593|gb|EEV37415.1| transcription-repair coupling factor [Enterococcus casseliflavus
EC10]
Length = 1172
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 236/592 (39%), Positives = 372/592 (62%), Gaps = 13/592 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYAD-GMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y + +PV Q + ++ +Y
Sbjct: 496 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNEDKLFIPVTQLN-LIQKY- 551
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E+K P+ ++KL + W + K K I+ + DL+ LY R +K + P +
Sbjct: 552 VASESKTPK-INKLGGS-EWAKTKRKVTAKIEDIADDLILLYAKRESEKGYAFQPDDAYQ 609
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVGFGKTEVALRA F +
Sbjct: 610 KEFEDAFPYSETDDQLRSTAEIKRDM-EKEKPMDRLLVGDVGFGKTEVALRAAFKAIKES 668
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + +RF +P + VG+LSRF++K ++ E ++ ++ G ++I+V
Sbjct: 669 KQVAFLVPTTILAQQHYETMVDRFEGFP-VNVGVLSRFRTKKQQNETIEQVRKGQVDILV 727
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 728 GTHRLLSKDVEFADLGLLVIDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSML 787
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + V AI+ E+ RGGQVFY+ R+ +E ++
Sbjct: 788 GVRDLSVIETPPENRYPIQTYVMEMNPGAVREAIQREMARGGQVFYLYNRVDTIERKVEE 847
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQ P IA AHGQ QLE T+ F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 848 LQALVPDARIAYAHGQMTEIQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 907
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 908 DYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKVLNEVSEKRLQAIKDFTELGSGFKIAMR 967
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++++ + +V+ID+ I+
Sbjct: 968 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVTR-KQGKNTQTEKTTVEIDLGIDAY 1026
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
LP+ YI +E+ + Q+ + + + L ++G+ P + LL
Sbjct: 1027 LPTSYIEDERQKIEIYKRIRELESQE--AVDELQDDLLDRFGEYPVEVAHLL 1076
>gi|218231044|ref|YP_002364903.1| transcription-repair coupling factor [Bacillus cereus B4264]
gi|218159001|gb|ACK58993.1| transcription-repair coupling factor [Bacillus cereus B4264]
Length = 1176
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALIREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENIV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|378981819|ref|YP_005230124.1| transcription-repair coupling factor [Treponema pallidum subsp.
pertenue str. CDC2]
gi|374678236|gb|AEZ58528.1| transcription-repair coupling factor [Treponema pallidum subsp.
pertenue str. CDC2]
Length = 1140
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 240/564 (42%), Positives = 359/564 (63%), Gaps = 13/564 (2%)
Query: 146 SYKVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQ 203
S +D + L GDYVVH + GIG F GI + K + +YV + YA + +P++Q
Sbjct: 467 STPIDTFVELNPGDYVVHAQYGIGLFKGI--ERIKTAQSERDYVNLLYAQEETILIPIEQ 524
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
A ++ RY + NE +P L L + +WE RK + K +++ + L+ELY R +
Sbjct: 525 A-HLVQRY-IGNEGNKPH-LDSLG-SKSWETRKARVKKSVENIAQKLVELYSLRKTTRGH 580
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+PK+ F A FPYE T DQ+ +V++D+ E PMDRL+CGDVG+GKTE+A+R
Sbjct: 581 AFPKDDEWQYAFEAAFPYEETDDQRICIEEVKQDMQE-AVPMDRLVCGDVGYGKTEIAMR 639
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F V GKQ + L PT +L +QHF + RF +P +++ LSRF K+E+++ L +
Sbjct: 640 AAFKAVMGGKQVVFLTPTTLLVEQHFRTICNRFKHFP-VRIEKLSRFVPKSEQKDILAKL 698
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
HG +++IVGTH L+ V + +LGL+++DEEQRFGV+ KEK+ K +VD L+LSATPI
Sbjct: 699 AHGDIDLIVGTHRLIQKDVSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPI 758
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++ + RD SL++TPP RLPI+T + F V +AI+ ELDR GQ+FY+ RI
Sbjct: 759 PRTLHMGMLKIRDMSLLTTPPEGRLPIETVIQQFDPNLVATAIRKELDREGQIFYLHNRI 818
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ LE LQ+ P + I +AH S +LE+ E+F Q ++L+ T I+E+G+D+ N
Sbjct: 819 ENLESVKCMLQKLVPELSICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPN 878
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
ANTII+ +G++QLYQLRGRVGR+DK+A+AYL Y LSD A++RL + + +L
Sbjct: 879 ANTIIIDRADMYGVSQLYQLRGRVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDL 938
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 682
G GF++A KDM IRG G + G++Q+GD+ +VG DL+ ++L E++ ++ +H ++V
Sbjct: 939 GAGFKVALKDMEIRGVGNLLGKEQSGDIYSVGFDLYVQLLEEAIERL-QHAPNEQRIETV 997
Query: 683 QIDININPRLPSEYINHLENPMEM 706
ID+N +P YI E ME+
Sbjct: 998 -IDLNYRGFIPHMYIAADEIKMEL 1020
>gi|403389192|ref|ZP_10931249.1| transcription-repair coupling factor [Clostridium sp. JC122]
Length = 1174
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 240/606 (39%), Positives = 386/606 (63%), Gaps = 16/606 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDYVVH G+G + GIK +VQ +++ + Y +G +P +Q ++ +Y
Sbjct: 505 LKLGDYVVHANHGVGVYKGIKQLEVQGHKK---DFLELSYNNGDTLYVPAEQLD-LVQKY 560
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E P+ ++KL + W + KTK K +I+ + DL++LY R + K + K+
Sbjct: 561 -IGSEGSPPK-VNKLG-GSEWIKAKTKVKKSIEDIAEDLVKLYATRAQIKGHKFGKDTVW 617
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FP++ TPDQ + D+++D+ E + PMDRL+CGDVG+GKTEVALRA F V
Sbjct: 618 QKQFEDEFPFQETPDQLTSIEDIKKDM-ESDKPMDRLLCGDVGYGKTEVALRAAFKCVME 676
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH+ + +RFS +P +KV ++SRF++ + +E L +K G+++I+
Sbjct: 677 GKQVAFLVPTTILAQQHYKNMVKRFSDFP-LKVDMVSRFRTSGQIKETLKKLKEGNVDIL 735
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
VGTH LL V + +LGLL+VDEEQRFGV KEKI + K +V+VLTLSATPIPRTL+++L
Sbjct: 736 VGTHRLLQKDVQFKDLGLLIVDEEQRFGVTHKEKIKNLKKNVEVLTLSATPIPRTLHMSL 795
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG RD S+I TPP +R P++T++ F+++ + AI EL+R GQ+ +V R++ +++
Sbjct: 796 TGVRDISVIETPPEDRYPVQTYVVEFNEQLIRDAIMRELNRDGQILFVYNRVETIKDMAA 855
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+LQ+ P I I HGQ ++LE+ + F +L+CT I+E+G+DIQNANT+I+ D
Sbjct: 856 YLQKLVPEARIGIGHGQMTEKELEKVILDFTDYKYDMLVCTTIIETGIDIQNANTMIIYD 915
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A+++ ELG GF++A
Sbjct: 916 ADRMGLSQLYQLRGRVGRSNRIAYAYFTYTKDKVLTEVAEKRLKAIKDFTELGSGFKIAM 975
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G I G Q G + VG DL+ ML +S+ K+ + + + P ++ +D+ I+
Sbjct: 976 RDLEIRGAGNIMGSSQHGHMAVVGYDLYCRMLEDSI-KLIKGDIENEPIETT-VDLKIDA 1033
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+PS YI +E+ + D +M+ E + ++ P ++ L+ Y++
Sbjct: 1034 FIPSNYIVDETQKIEVYKKIASIDSYD--YMMELQEEIEDRFSDIPPTVYNLMNIAYLKF 1091
Query: 751 MAADIG 756
+A ++G
Sbjct: 1092 LAKEVG 1097
>gi|375090114|ref|ZP_09736433.1| transcription-repair coupling factor [Facklamia languida CCUG 37842]
gi|374566007|gb|EHR37262.1| transcription-repair coupling factor [Facklamia languida CCUG 37842]
Length = 1193
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 249/613 (40%), Positives = 370/613 (60%), Gaps = 17/613 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGM-AKLPVKQASRMLYRYN 212
L GD+VVH GIG++ G+ + + V + + IEY + +PV Q +L +Y
Sbjct: 499 LEVGDFVVHVNHGIGRYTGV--ETMEIGGVHRDLLTIEYQNNARVMVPVDQL-HLLQKYV 555
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAI 271
E K PR + KL T W + K K I+ + +L+ LY R ++K + K+ P
Sbjct: 556 ASGEAKTPR-VHKLGGT-EWSKTKQKVSSKIEDIADELIALYAQREQEKGYAFDKDTPEQ 613
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
AEF A FPY TPDQ ++ +++ D+ ER+ PMDRL+ GDVG+GKTEVA+RAIF V G
Sbjct: 614 AEFEAAFPYVETPDQLQSTQEIKHDM-ERDRPMDRLLIGDVGYGKTEVAMRAIFKAVIEG 672
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQA L PT +LA+QH+ + ERFS YP ++ +LSRF SKA++++ + +K G I+V
Sbjct: 673 KQAAFLVPTTILAQQHYHSLLERFSDYP-FEIRMLSRFVSKADQQQTIKDLKIGACQIVV 731
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLL+VDEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 732 GTHRLLSQDVDFLDLGLLIVDEEQRFGVKHKERLKQLRSQVDVLTLTATPIPRTLHMSMI 791
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T++ + + SAI+ E+ RGGQ FY+ R+ + +
Sbjct: 792 GVRDLSVIETPPSNRYPVQTYVMERNDGAIKSAIEREMARGGQCFYLYNRVATIYQRAQA 851
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q P +A+AHGQ +LE + F QG +L+ T I+E+G+DI NANT+ +
Sbjct: 852 IQDLVPQARVAVAHGQMSEVELENILYDFIQGEYDVLVTTTIIETGVDIPNANTLFIDHA 911
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+ LYQLRGRVGR ++ A AYL Y LS+ + +RL A+ E ELG GF++A +
Sbjct: 912 DRMGLSTLYQLRGRVGRTNRIAFAYLMYDPMKQLSEISEKRLNAIREFTELGSGFKIAMR 971
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV--QIDININ 689
D+ IRG G + G QQ+G + +VG DL+ +ML E++ + + ++V +ID+ I+
Sbjct: 972 DLSIRGAGNLLGAQQSGFIDSVGFDLYSQMLKEAVDRKQNKEGTGLGTRTVETEIDLGID 1031
Query: 690 PRLPSEYINHLENPMEMVNEAEKAAEQ--DIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
LP+ YI + A KA +Q D + L +YG+ P + LL
Sbjct: 1032 AYLPASYIQDERQKI----AAYKAIQQINDAGSHRDMQDQLIDRYGEYPDPVADLLDIAL 1087
Query: 748 VRRMAADIGITKI 760
++ +A+ IGI +I
Sbjct: 1088 LQSLASQIGILQI 1100
>gi|378972843|ref|YP_005221447.1| transcription-repair coupling factor [Treponema pallidum subsp.
pertenue str. SamoaD]
gi|378973910|ref|YP_005222516.1| transcription-repair coupling factor [Treponema pallidum subsp.
pertenue str. Gauthier]
gi|374677166|gb|AEZ57459.1| transcription-repair coupling factor [Treponema pallidum subsp.
pertenue str. SamoaD]
gi|374679305|gb|AEZ59596.1| transcription-repair coupling factor [Treponema pallidum subsp.
pertenue str. Gauthier]
Length = 1140
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 240/564 (42%), Positives = 359/564 (63%), Gaps = 13/564 (2%)
Query: 146 SYKVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQ 203
S +D + L GDYVVH + GIG F GI + K + +YV + YA + +P++Q
Sbjct: 467 STPIDTFVELNPGDYVVHAQYGIGLFKGI--ERIKTAQSERDYVNLLYAQEETILIPIEQ 524
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
A ++ RY + NE +P L L + +WE RK + K +++ + L+ELY R +
Sbjct: 525 A-HLVQRY-IGNEGNKPH-LDSLG-SKSWETRKARVKKSVENIAQKLVELYSLRKTTRGH 580
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+PK+ F A FPYE T DQ+ +V++D+ E PMDRL+CGDVG+GKTE+A+R
Sbjct: 581 AFPKDDEWQYAFEAAFPYEETDDQRICIEEVKQDMQE-AVPMDRLVCGDVGYGKTEIAMR 639
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F V GKQ + L PT +L +QHF + RF +P +++ LSRF K+E+++ L +
Sbjct: 640 AAFKAVMGGKQVVFLTPTTLLVEQHFRTICNRFKHFP-VRIEKLSRFVPKSEQKDILAKL 698
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
HG +++IVGTH L+ V + +LGL+++DEEQRFGV+ KEK+ K +VD L+LSATPI
Sbjct: 699 AHGDIDLIVGTHRLIQKDVSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPI 758
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++ + RD SL++TPP RLPI+T + F V +AI+ ELDR GQ+FY+ RI
Sbjct: 759 PRTLHMGMLKIRDMSLLTTPPEGRLPIETVIQQFDPNLVATAIRKELDREGQIFYLHNRI 818
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ LE LQ+ P + I +AH S +LE+ E+F Q ++L+ T I+E+G+D+ N
Sbjct: 819 ENLESVKCMLQKLVPELSICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPN 878
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
ANTII+ +G++QLYQLRGRVGR+DK+A+AYL Y LSD A++RL + + +L
Sbjct: 879 ANTIIIDRADMYGVSQLYQLRGRVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDL 938
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 682
G GF++A KDM IRG G + G++Q+GD+ +VG DL+ ++L E++ ++ +H ++V
Sbjct: 939 GAGFKVALKDMEIRGVGNLLGKEQSGDIYSVGFDLYVQLLEEAIERL-QHAPNEQRIETV 997
Query: 683 QIDININPRLPSEYINHLENPMEM 706
ID+N +P YI E ME+
Sbjct: 998 -IDLNYRGFIPHMYIAADEIKMEL 1020
>gi|266619807|ref|ZP_06112742.1| transcription-repair coupling factor [Clostridium hathewayi DSM
13479]
gi|288868593|gb|EFD00892.1| transcription-repair coupling factor [Clostridium hathewayi DSM
13479]
Length = 1178
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 245/654 (37%), Positives = 395/654 (60%), Gaps = 19/654 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQAS 205
K+ +S L GDYVVH+ G+G + GI+ +++D + +Y+ +EY DG LP A+
Sbjct: 500 KIQSFSDLAVGDYVVHEDHGLGIYRGIE-KIEQDGVIK-DYLKVEYGDGGNLYLP---AT 554
Query: 206 RM--LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
R+ + +Y E K+P+ L++L W + KT+ K A++++ DL++LY R +
Sbjct: 555 RLDGIQKYA-GAEAKKPK-LNRLG-GDQWNKTKTRVKGAVREIAKDLVQLYAARQDTQGF 611
Query: 264 PY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
Y P EF FPYE T DQ A + D+ R+ MDRLICGDVG+GKTE+ALR
Sbjct: 612 QYGPDTVWQKEFEEMFPYEETEDQLDAIDSTKSDMESRKI-MDRLICGDVGYGKTEIALR 670
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F V KQ + L PT +LA+QH++ +R +P ++V L+SRF++ ++ ++ L+ +
Sbjct: 671 AAFKAVQDEKQVVYLVPTTILAQQHYNTFVQRMKDFP-VRVDLMSRFRTPSQVKKTLEDL 729
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K G ++I++GTH +L V + +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPI
Sbjct: 730 KRGLVDIVIGTHRVLSKDVQFKDLGLLIIDEEQRFGVAHKEKIKKLKENIDVLTLTATPI 789
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL+++L G RD S++ PP +R+PI+T++ ++ E V AI EL RGGQV+YV R+
Sbjct: 790 PRTLHMSLVGIRDMSVLEEPPVDRMPIQTYVMEYNDEMVREAINRELSRGGQVYYVYNRV 849
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
++E + P + AHGQ + +LE M F G I +L+CT I+E+GLDI N
Sbjct: 850 SNIDEVAGHIASLVPEATVTFAHGQMHEHELERIMFDFVNGEIDVLVCTTIIETGLDIPN 909
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
ANT+I+QD + GL+QLYQLRGRVGR+ + ++A+L Y +L ++A +RL A+ E EL
Sbjct: 910 ANTMIIQDADRMGLSQLYQLRGRVGRSSRTSYAFLMYKRDKMLREEAEKRLQAIREFTEL 969
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSV 682
G G ++A +D+ IRG G + G +Q G + VG DL+ ++L +++ ++ Y++V
Sbjct: 970 GSGIKIAMRDLEIRGAGNVLGAEQHGHMEAVGYDLYCKLLNQAVLELKGQRREEDTYETV 1029
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
+D +I+ +P+ YI + +++ +D + MQ + L ++G P +E L
Sbjct: 1030 -VDCDIDAYIPTSYIKNEYQKLDIYKRISSIENEDEYMDMQ--DELMDRFGDIPKPVENL 1086
Query: 743 LKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTF 796
L+ ++ +A +T++ + + + + K+ I +M + +R L F
Sbjct: 1087 LRVAGIKALAHSAYVTEVNINSQEIRLTMYQKAKLSVAGIPAMVDQ-YRGDLKF 1139
>gi|408794221|ref|ZP_11205826.1| transcription-repair coupling factor [Leptospira meyeri serovar
Hardjo str. Went 5]
gi|408461456|gb|EKJ85186.1| transcription-repair coupling factor [Leptospira meyeri serovar
Hardjo str. Went 5]
Length = 1140
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 244/606 (40%), Positives = 382/606 (63%), Gaps = 17/606 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRMLYRYN 212
L+ GDYVVH G+G+FV K + K +++ +EYA G + +P+ Q S ++ +Y
Sbjct: 478 LKEGDYVVHVNHGVGRFV--KIERTKADGKERDFLKLEYAGGDSLFVPLDQIS-LVQKYI 534
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
+T + TL K +W++ K + + ++ K+ +L+ LY +R+K +P +
Sbjct: 535 GGTDTPKLDTLGK----NSWKKAKDRVQESVDKLAEELVLLYSNRMKLNGFAFPPDTIWQ 590
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A F +E TPDQ A V++DL E PMDRL+CGDVG+GKTEVA+RA F V+ AG
Sbjct: 591 EEFEAAFEFEETPDQISAIESVKQDL-ESARPMDRLVCGDVGYGKTEVAIRAAFKVIMAG 649
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ M+L PT +L+ QHF+ R+ YP IK+ +SRF+S AE E L G +++++
Sbjct: 650 KQVMLLTPTTILSLQHFNTFKLRYENYP-IKIAFVSRFRSAAEIREDLKNFSEGKIDMLI 708
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH++L S+V NLGLL++DEEQ+FGV KE I FK VDVLTL+ATPIPRTL++ALT
Sbjct: 709 GTHAILSSKVKPKNLGLLIIDEEQKFGVTHKEAIKKFKNLVDVLTLTATPIPRTLHMALT 768
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G R+ S+IST P R ++T++ + AI+ E++RGGQVFY+ R++ +EE +
Sbjct: 769 GIRELSIISTAPKNRQSVETYVLEEDDTLIQEAIRKEIERGGQVFYLYNRVESIEEEAAY 828
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
++ P V + I HGQ ++EET+ F + IL+ T I+ESG+D+ N NT+IV+
Sbjct: 829 IRSLVPEVSVGILHGQLTEDEIEETLVDFYEKKYDILVTTTIIESGIDMPNVNTLIVKRA 888
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQ+RGRVGR+D++A+AY+FYP K L+++ A +RL + E +ELG GF++A +
Sbjct: 889 DMFGLSQLYQIRGRVGRSDRKAYAYMFYPSKKLMTELAEKRLNTIFEYQELGSGFKVAMR 948
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININP 690
D+ IRG G + G++Q+GD+ VG DL+ +ML E++S++ E + V +++ N
Sbjct: 949 DLEIRGAGNLLGKEQSGDIMEVGFDLYVKMLEEAISRIKGEEVRVEV---RTAVNLKTNF 1005
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
LP +YI + +E E +A D + + + + ++G+ P + ++ +R
Sbjct: 1006 YLPDDYIPDTKQKIEFYKRFEGSANLD--EIEELSLEMEDRFGELPQIAKTFVELEKIRT 1063
Query: 751 MAADIG 756
+A+++G
Sbjct: 1064 LASNLG 1069
>gi|313888106|ref|ZP_07821780.1| transcription-repair coupling factor [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845796|gb|EFR33183.1| transcription-repair coupling factor [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 1159
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 227/553 (41%), Positives = 358/553 (64%), Gaps = 26/553 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYR 210
L+ GDYVVH+ G+GK+VG + +V S + +Y+ IEY G KL P+ +A +Y+
Sbjct: 492 LQIGDYVVHEAHGVGKYVGTRRLEV---SGIQKDYILIEYG-GEDKLFLPI-EALDSIYK 546
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA 270
Y E RP ++KL ++ W+++K + + +I M DL++LY R K + ++
Sbjct: 547 Y--VQEGNRPPKVNKL-NSLDWKKKKARARQSIDDMAEDLIKLYATRENTKGFAFSEDSQ 603
Query: 271 IA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF F YE TP Q K+ +++ D+ E+ +PMDRL+C DVG+GKTEVALRA F +
Sbjct: 604 YQREFEDAFIYEETPGQLKSAEEIKEDM-EKASPMDRLLCADVGYGKTEVALRAAFKAIL 662
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQ +L PT +LA+QH++ + ERF +P + VGLLSRF+SK +++ L+ +K G+++I
Sbjct: 663 DGKQVAILVPTTILAQQHYNTIKERFKNFP-VGVGLLSRFRSKKDQKMDLEGLKDGNIDI 721
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
IVGTH LL V + +LGLL++DEEQRFGV+ KEK+ K +VD LTL+ATPIPRTL ++
Sbjct: 722 IVGTHRLLSKDVKFKDLGLLIIDEEQRFGVRHKEKLRMLKENVDTLTLTATPIPRTLQMS 781
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
+ G RD S+I PP ER P++T++ ++ V AI E++RGGQV+++ ++ +E +
Sbjct: 782 MIGIRDMSVIEEPPEERFPVETYVLEYNNLMVREAILKEIERGGQVYFLYNKVSNMENKL 841
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
L++ P ++A+GQ + LE+TM F +G + +L+C+ I+E+G+D+ NANT+I+
Sbjct: 842 LELRKLVPEATFSMANGQMTEKALEDTMIDFIEGNVDVLVCSTIIETGMDVPNANTMIIT 901
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GL+QLYQLRGR+GR+ + A+AY Y + +S+ A +RL A++E E G G ++A
Sbjct: 902 DSNRLGLSQLYQLRGRIGRSSRIAYAYFTYDRSTSISEVAQKRLQAIKEFTEFGSGHKIA 961
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK-----VDEHCVISVPYKSVQI 684
E+D+ IRG G+I G +Q+G + +G DL+ + L +++ K V+E I
Sbjct: 962 ERDLEIRGSGSILGSRQSGHIEKIGYDLYMKYLKDAVMKLKGLDVEEEI-------ETTI 1014
Query: 685 DININPRLPSEYI 697
D+ ++ +P EYI
Sbjct: 1015 DLKLDSFIPKEYI 1027
>gi|302380838|ref|ZP_07269301.1| transcription-repair coupling factor [Finegoldia magna
ACS-171-V-Col3]
gi|302311333|gb|EFK93351.1| transcription-repair coupling factor [Finegoldia magna
ACS-171-V-Col3]
Length = 1168
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 238/616 (38%), Positives = 385/616 (62%), Gaps = 16/616 (2%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASR 206
V+ L DYVVH+ GIG++ GI K DV + + +Y+ I+Y A+ +P Q +
Sbjct: 497 VNYSDLNIDDYVVHENHGIGQYKGIEKIDV---NGIQKDYIVIQYKANDRLMIPTDQMN- 552
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP 266
++ +Y K+P +L+KLS W + K K K ++ +M DL+ELY R K K +
Sbjct: 553 LVQKYIGGGNVKKP-SLNKLS-GNDWAKAKQKAKKSVDEMADDLVELYSKRAKLKGYQFS 610
Query: 267 KNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
++ EF FPYE T Q ++ +++ D+ E + PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 611 QDTEWQREFEDSFPYEETDSQVRSIEEIKSDM-ESDRPMDRLLCGDVGYGKTEVAIRACF 669
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
+ GKQ L PT +LA+QHF+ + ERF YP I+V ++SRF S A +++ + ++ G
Sbjct: 670 KAIMDGKQVAFLVPTTILAQQHFNTIKERFRDYP-IRVEMMSRFVSPARQKQIMKDVQRG 728
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++++VGTH +L + + +LGLLV+DEEQRFGV+ KEK+ S + +VDVLTLSATPIPRT
Sbjct: 729 LVDLLVGTHRILSKNLKFKDLGLLVIDEEQRFGVRHKEKLKSMRENVDVLTLSATPIPRT 788
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L + LTG RD SL+ PP +R PI T+++ ++ + AI ELDRGGQ+++V RI+ +
Sbjct: 789 LQMGLTGIRDMSLLEEPPEDRTPISTYVTEYNPSLIRDAIIRELDRGGQIYFVYNRIEDI 848
Query: 506 EEPMDF-LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
++ M+F L++ P ++IAIAHG+ ++LE M F G +L+CT I+E+GLDIQN N
Sbjct: 849 DQ-MEFKLKELVPELNIAIAHGRMNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVN 907
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+I+ + + GL+QLYQL+GR+GR+D+ + AY Y + L++ + +RL A+++ E G
Sbjct: 908 TMIIYNADKMGLSQLYQLKGRIGRSDRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFGS 967
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ +RG G + GE Q G + +G DL+ ++L +++ + IS +V I
Sbjct: 968 GFKIAMRDLELRGAGNLLGESQHGHIAKIGYDLYVKLLEQAVREAKGET-ISENKNTVMI 1026
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
+I +N +P +YI+ E +++ + ++D + + + L ++G P + ++
Sbjct: 1027 EIKVNGYIPEDYISENETKIDIYKKIASIQDEDDYS--EIIDELIDRFGDVPKPIVNIMD 1084
Query: 745 KLYVRRMAADIGITKI 760
++ A + I I
Sbjct: 1085 VSIIKAFCARLSIESI 1100
>gi|423632851|ref|ZP_17608596.1| transcription-repair coupling factor [Bacillus cereus VD154]
gi|401258895|gb|EJR65076.1| transcription-repair coupling factor [Bacillus cereus VD154]
Length = 1176
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQYDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENIV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|313892911|ref|ZP_07826488.1| transcription-repair coupling factor [Veillonella sp. oral taxon 158
str. F0412]
gi|313442264|gb|EFR60679.1| transcription-repair coupling factor [Veillonella sp. oral taxon 158
str. F0412]
Length = 1055
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 264/631 (41%), Positives = 384/631 (60%), Gaps = 20/631 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYR 210
L GDYVVH GIGK++G+K + + +Y+ I YA G KL P + L +
Sbjct: 424 DLTPGDYVVHSMHGIGKYIGLK--TIETEGIHRDYIEIAYA-GTDKLFLPANNLDQ-LQK 479
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNP 269
Y + NE PR + K+ W + TK K +I + L+E+Y R + + P P
Sbjct: 480 Y-IGNEGDVPR-IHKMGGRD-WAKVVTKAKKSIDDLADKLVEIYAQREITEGFAFLPDQP 536
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF FPYE T DQ +A +++ + ER PMDRL+ GDVGFGKTEVA+RAIF V
Sbjct: 537 WQQEFEDAFPYEETEDQLQATAEIKESM-ERPVPMDRLLAGDVGFGKTEVAMRAIFKAVM 595
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
+GKQ VL PT VLA+QHF RF+ + +KV +L+RF+S AEK++ L +++G +++
Sbjct: 596 SGKQVAVLVPTTVLAQQHFQTFLNRFAPF-GVKVDVLNRFRSTAEKKQVLKGVENGSIDV 654
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTHSLL +VV+ +LG+LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++
Sbjct: 655 LIGTHSLLNKKVVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMS 714
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
L G R+ S+I+TPP ERLP++T++ + V AIK EL RGGQV++V R+ +
Sbjct: 715 LVGVREMSVINTPPEERLPVQTYVVEYDMNLVADAIKRELARGGQVYFVYNRVASINHMG 774
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+ L+ A P + AIAHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+
Sbjct: 775 ELLEAALPDLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIY 834
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQL 628
D + GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+L
Sbjct: 835 DADRLGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-MLSEAAEKRLKAIEEFTELGAGFKL 893
Query: 629 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDINI 688
A +D+ IRG G + G QQ G++ +VG ++ ML E+++K V ID+ +
Sbjct: 894 AMRDLEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQNKEVEREVSIDPAIDLEV 953
Query: 689 NPRLPSEYINHLENPMEMVNEAE--KAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
+ + EYI + + K+ EQ L T+ L ++G ++ LL+
Sbjct: 954 DAFIDDEYIKDSARKISVYQRLLHIKSKEQ----LDDMTDELIDRFGTPTDPVDRLLRIA 1009
Query: 747 YVRRMAADIGITKIYASGKMVGMKTNMNKKV 777
++ A +GI I K + + + + K+
Sbjct: 1010 QIKEQARLLGIKSIVRRDKQLTIHWHDDSKM 1040
>gi|255536470|ref|YP_003096841.1| transcription-repair coupling factor [Flavobacteriaceae bacterium
3519-10]
gi|255342666|gb|ACU08779.1| Transcription-repair coupling factor [Flavobacteriaceae bacterium
3519-10]
Length = 1138
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 238/627 (37%), Positives = 373/627 (59%), Gaps = 27/627 (4%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVF-IEYADGMAKLPVKQASRML 208
D ++ GDY+ H GIGKF+G+ V+ ++ ++ F + Y +G + +
Sbjct: 449 DLMQMKVGDYITHIDHGIGKFMGL---VKVNNNGKVQECFKLTYKNGDLLYVSIHSLHKI 505
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PK 267
+YN P+ R LSKL + AW+ K K K ++++ DL+ LY R K + P
Sbjct: 506 SKYNGPD--GREIVLSKLG-SPAWKTLKQKTKAKVKQIAFDLIRLYAKRKTAKGFAFTPD 562
Query: 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
+ E A F YE TPDQ+KA LDV+ D+ E+ET MDRLICGDVGFGKTE+A+RA F
Sbjct: 563 SYLQNELEASFIYEDTPDQEKATLDVKTDM-EKETVMDRLICGDVGFGKTEIAVRAAFKA 621
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
+ GKQ +L PT +LA QH+ ER +P + + ++RF++ +K E L + G +
Sbjct: 622 ATDGKQVAILVPTTILAFQHYRSFKERLKDFP-VNISYMNRFRTAKQKSETLKGLAEGKI 680
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH L+ S V + +LGLL++DEE +FGV K+K+ + K ++D LTL+ATPIPRTL
Sbjct: 681 DIVIGTHQLVSSTVKFKDLGLLIIDEEHKFGVAVKDKLKTLKNNIDTLTLTATPIPRTLQ 740
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+L RD S+I TPPP R P++T + FS+E + AI YE+ R GQV+++ RI+ L++
Sbjct: 741 FSLMAARDLSVIKTPPPNRQPVETSIVGFSEEIIRDAISYEIQRDGQVYFINNRIENLKD 800
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+Q+ P + HGQ +QLE + F +G +L+ T IVESG+D+ NANT+
Sbjct: 801 IAGLIQRLVPDAKVITGHGQMEGKQLERNVLDFMEGKYDVLVSTTIVESGVDVPNANTMF 860
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ D Q+FG+A L+Q+RGRVGR++++A YL P +++ A +RL A+E+ +LG GFQ
Sbjct: 861 INDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPFDMMTSDARKRLEAIEQFSDLGSGFQ 920
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV-------------DEHCV 674
+A KD+ IRG G + G +Q+G + +G D + +++ E+L ++ ++
Sbjct: 921 IAMKDLEIRGAGDLLGGEQSGFINEMGFDTYQKIMQEALEELQNDEEFGELFENEEDRKK 980
Query: 675 ISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYG 733
+ K V ID ++ LP Y+ +E + + +K AE Q+ L +F L ++G
Sbjct: 981 LFKSTKEVNIDTDLELMLPDVYVQSIEERLSLY---QKLAEIQNRGDLRKFENELNDRFG 1037
Query: 734 KEPYSMEILLKKLYVRRMAADIGITKI 760
P + LLK + ++ +AA+IG KI
Sbjct: 1038 ALPPEAKNLLKSVELKWIAAEIGFDKI 1064
>gi|229153832|ref|ZP_04281963.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 4342]
gi|228629636|gb|EEK86332.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 4342]
Length = 1176
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 244/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R PI+T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPIQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|52145163|ref|YP_081665.1| transcription-repair coupling factor [Bacillus cereus E33L]
gi|51978632|gb|AAU20182.1| transcription-repair coupling factor [Bacillus cereus E33L]
Length = 1176
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|229074115|ref|ZP_04207162.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-18]
gi|229094775|ref|ZP_04225781.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-29]
gi|229113728|ref|ZP_04243164.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-3]
gi|407708004|ref|YP_006831589.1| Binding-protein-dependent transport system inner membrane component
[Bacillus thuringiensis MC28]
gi|423376672|ref|ZP_17353956.1| transcription-repair coupling factor [Bacillus cereus BAG1O-2]
gi|423439766|ref|ZP_17416672.1| transcription-repair coupling factor [Bacillus cereus BAG4X2-1]
gi|423462838|ref|ZP_17439606.1| transcription-repair coupling factor [Bacillus cereus BAG6O-1]
gi|423532194|ref|ZP_17508612.1| transcription-repair coupling factor [Bacillus cereus HuB2-9]
gi|423548766|ref|ZP_17525124.1| transcription-repair coupling factor [Bacillus cereus HuB5-5]
gi|423621427|ref|ZP_17597205.1| transcription-repair coupling factor [Bacillus cereus VD148]
gi|228669725|gb|EEL25131.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-3]
gi|228688643|gb|EEL42515.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-29]
gi|228709009|gb|EEL61135.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-18]
gi|401174297|gb|EJQ81508.1| transcription-repair coupling factor [Bacillus cereus HuB5-5]
gi|401263456|gb|EJR69581.1| transcription-repair coupling factor [Bacillus cereus VD148]
gi|401641311|gb|EJS59031.1| transcription-repair coupling factor [Bacillus cereus BAG1O-2]
gi|402421809|gb|EJV54056.1| transcription-repair coupling factor [Bacillus cereus BAG4X2-1]
gi|402422966|gb|EJV55187.1| transcription-repair coupling factor [Bacillus cereus BAG6O-1]
gi|402465272|gb|EJV96954.1| transcription-repair coupling factor [Bacillus cereus HuB2-9]
gi|407385689|gb|AFU16190.1| Transcription-repair-coupling factor [Bacillus thuringiensis MC28]
Length = 1176
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 382/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETDDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E L +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETLKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVS--TIEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|339006643|ref|ZP_08639218.1| transcription-repair-coupling factor [Brevibacillus laterosporus LMG
15441]
gi|338775852|gb|EGP35380.1| transcription-repair-coupling factor [Brevibacillus laterosporus LMG
15441]
Length = 1188
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 241/615 (39%), Positives = 377/615 (61%), Gaps = 22/615 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK----FDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRML 208
L+ GD+VVH GIGK++GI+ + KD Y+ ++YA G + +P+ Q +
Sbjct: 502 LKPGDFVVHINHGIGKYLGIETKEILGIHKD------YLHVQYAGGDSLFVPIDQIDH-V 554
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
+Y + +E +P+ + + W+R K+K + +++ + DL++LY R + + K+
Sbjct: 555 QKY-VGSEEAQPKIYNLGGN--EWKRVKSKVETSVKDIAEDLIKLYAQREQAVGYSFNKD 611
Query: 269 P-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
EF A FPY+ T DQ +A +V+ D+ E + PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 612 SLEQREFEAMFPYQETVDQLRAITEVKADM-ESKRPMDRLVCGDVGYGKTEVAIRAAFKS 670
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V GKQ +L PT +LA+QHF+ ERFS +P I+V +LSRF+S+ E+ + +K G +
Sbjct: 671 VMDGKQVALLVPTTILAQQHFETFKERFSDFP-IRVEVLSRFRSRKEQNATMKGLKEGTV 729
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
++++GTH LL +V+ +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL+
Sbjct: 730 DVVIGTHRLLSKDIVFRDLGLLIVDEEQRFGVSHKEKLKQLKTNVDVLTLTATPIPRTLH 789
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+++ G RD S+I TPP R P++T++ +S V AI+ EL R GQVF++ +++G+E+
Sbjct: 790 MSMLGVRDLSVIETPPENRFPVQTYVLDYSPALVREAIERELAREGQVFFLYNQVQGIEQ 849
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ + P +A+AHGQ +LE + F G +L+ T I+E+G+DI N NT+I
Sbjct: 850 MAEHISALVPDARVAVAHGQMNESELERIILDFLDGNYDVLVSTTIIETGVDIPNVNTLI 909
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ + + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF+
Sbjct: 910 IYNADRMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFK 969
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS--VPYKSVQID 685
+A +D+ IRG G + G +Q G + VG DL+ +ML E++ + P V+I+
Sbjct: 970 IAMRDLSIRGAGNLLGAEQHGFINTVGFDLYTQMLKEAIDDLRGEVRTEEIAPVPPVEIN 1029
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ I+ LPS+YI +EM + A I L + L ++G P ++ LL
Sbjct: 1030 LQIDAYLPSDYITDSRQKIEMYKKF--VATSTIEELDDLADELIDRFGNIPSPVDNLLMI 1087
Query: 746 LYVRRMAADIGITKI 760
+R A + I +I
Sbjct: 1088 SRLRIQAMEHHIVEI 1102
>gi|375288295|ref|YP_005122836.1| transcription-repair coupling factor [Corynebacterium
pseudotuberculosis 3/99-5]
gi|384504310|ref|YP_005680980.1| transcription-repair coupling factor [Corynebacterium
pseudotuberculosis 1002]
gi|384506400|ref|YP_005683069.1| transcription-repair coupling factor [Corynebacterium
pseudotuberculosis C231]
gi|384508488|ref|YP_005685156.1| transcription-repair coupling factor [Corynebacterium
pseudotuberculosis I19]
gi|384510581|ref|YP_005690159.1| transcription-repair coupling factor [Corynebacterium
pseudotuberculosis PAT10]
gi|385807172|ref|YP_005843569.1| transcription-repair coupling factor [Corynebacterium
pseudotuberculosis 267]
gi|387136243|ref|YP_005692223.1| transcription-repair coupling factor [Corynebacterium
pseudotuberculosis 42/02-A]
gi|302205849|gb|ADL10191.1| Transcription-repair-coupling factor [Corynebacterium
pseudotuberculosis C231]
gi|302330407|gb|ADL20601.1| Transcription-repair-coupling factor [Corynebacterium
pseudotuberculosis 1002]
gi|308276083|gb|ADO25982.1| Transcription-repair-coupling factor [Corynebacterium
pseudotuberculosis I19]
gi|341824520|gb|AEK92041.1| Transcription-repair-coupling factor [Corynebacterium
pseudotuberculosis PAT10]
gi|348606688|gb|AEP69961.1| Transcription-repair-coupling factor [Corynebacterium
pseudotuberculosis 42/02-A]
gi|371575584|gb|AEX39187.1| Transcription-repair-coupling factor [Corynebacterium
pseudotuberculosis 3/99-5]
gi|383804565|gb|AFH51644.1| Transcription-repair-coupling factor [Corynebacterium
pseudotuberculosis 267]
Length = 1264
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/699 (36%), Positives = 401/699 (57%), Gaps = 29/699 (4%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI--KFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
+VDP +L++GD+VVH+ GIG+F+ + + D T EY+ +EYA P Q
Sbjct: 513 RVDPLALKTGDFVVHETHGIGRFLKMTERTITSGDETSRREYIVLEYAPAKRGQPADQLF 572
Query: 206 RMLYRYNLPNE---TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
+ +L ++ ++P LSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 573 VPMDSLDLLSKYVGGEKP-ALSKMGGSD-WKNTKKKARAAVREIAGELVELYAKRQSAPG 630
Query: 263 PPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
P+ P +P E FPY T DQ A V+ D+ E+ PMDR+I GDVG+GKTEVA+
Sbjct: 631 HPFAPDSPWQYEMEDNFPYVETEDQMMAIEAVKADM-EKPVPMDRVIVGDVGYGKTEVAV 689
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F V GKQ +VL PT +LA+QH ER + +P + + LSRF S E +E +
Sbjct: 690 RAAFKAVQDGKQVVVLVPTTLLAQQHLSTFDERMAGFP-VNLRGLSRFTSTVEAKETIKG 748
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+ G ++I++GTH LL + + + NLGL++VDEEQRFGV+ KE I + + VDVLT+SATP
Sbjct: 749 LADGTVDIVIGTHRLLQTGIQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATP 808
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL +++ G R+ S I TPP +R PI T++ A +++ +AI+ EL R GQVF+V +
Sbjct: 809 IPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQIAAAIRRELLRDGQVFFVHNK 868
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
+ +E+ L++ P I +AHGQ LE+T++ F +L+CT IVE+GLDI
Sbjct: 869 VSDIEKKARDLRELVPEARIVVAHGQMSEELLEQTVQGFWDREFDVLVCTTIVETGLDIA 928
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP L++ + +RLA + + +
Sbjct: 929 NANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGQTLTENSYDRLATIAQNND 988
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISV 677
LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D V +
Sbjct: 989 LGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADGKIVDAT 1048
Query: 678 P--YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKE 735
K ++ID+ ++ +P YIN +E+ + AA Q L+ E + +YG
Sbjct: 1049 DDGLKEIRIDLPVDAHIPESYINAERLRLEVYRKL--AASQSNADLILAVEEMEDRYGPL 1106
Query: 736 PYSMEILLKKLYVRRMAADIGITKIYASG---KMVGMKTNMNKKV-FKMMIDSMTSEVHR 791
P ++ LL +R +A GI+ I G K+ ++ +K+V K ++ S T
Sbjct: 1107 PEEVKRLLAVARLRHLAKSAGISDIGVQGTRIKIHPVELPDSKQVRLKRLLPSATYRAAA 1166
Query: 792 NSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
++ EG + + L ++ LL W+ L+E++
Sbjct: 1167 KAIQLSFPKEGRNVTDKPLRDV---ALLQWVADFLSEMF 1202
>gi|442315628|ref|YP_007356931.1| Transcription-repair coupling factor (superfamily II helicase)
[Riemerella anatipestifer RA-CH-2]
gi|441484551|gb|AGC41237.1| Transcription-repair coupling factor (superfamily II helicase)
[Riemerella anatipestifer RA-CH-2]
Length = 1119
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 244/627 (38%), Positives = 368/627 (58%), Gaps = 27/627 (4%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVF-IEYADGMAKLPVKQASRML 208
D SL+ GDY+ H GIGKF+G+ V+ ++ + F + Y +G A +
Sbjct: 430 DLMSLKVGDYIAHIDHGIGKFMGL---VKVNNGGKTQECFKLTYKNGDLLYVSIHALHKI 486
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PK 267
+YN + TLSK+ + +W+ K K K ++++ DL++LY R K Y P
Sbjct: 487 SKYN--GAEGKEITLSKIG-SPSWKNLKNKTKAKVKQIAFDLIKLYAKRKTAKGFAYTPD 543
Query: 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
E A F YE TPDQ+KA LDV+RD+ E +T MDRL+CGDVGFGKTEVA+RA F
Sbjct: 544 TYLQNELEASFLYEDTPDQEKATLDVKRDM-EADTIMDRLVCGDVGFGKTEVAIRAAFKA 602
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
+ GKQ VL PT +LA QH+ +ER +P + + L+RF++ +K E L+ + G +
Sbjct: 603 ATDGKQVAVLVPTTILAFQHYRSFAERLKDFP-VNISYLNRFRTAKQKRETLEKLAEGKI 661
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+II+GTH L +V + +LGLL++DEE +FGV K+K+ + K ++D LTL+ATPIPRTL
Sbjct: 662 DIIIGTHQLASDKVKFKDLGLLIIDEEHKFGVSVKDKLKTLKANIDTLTLTATPIPRTLQ 721
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+L RD S+I TPPP R P++T L F +E + AI YEL R GQV+++ RI L++
Sbjct: 722 FSLMAARDLSVIKTPPPNRQPVETQLIGFDEEIIRDAISYELQRDGQVYFINNRIDNLKD 781
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+Q+ P + HGQ +QLEE + F +G +L+ T IVESG+D+ NANTI
Sbjct: 782 IAGMIQRLVPDARVITGHGQMDGKQLEENILDFMEGRYDVLVSTTIVESGVDVPNANTIF 841
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ D Q+FG+A ++Q+RGRVGR++++A YL P +++ A +RL A+E+ +LG GFQ
Sbjct: 842 INDAQRFGMADVHQMRGRVGRSNRKAFCYLITPPFDMVTSDARKRLEAIEQFSDLGSGFQ 901
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY-------- 679
+A KD+ IRG G + G +Q+G + +G + + +++ ESL ++ +
Sbjct: 902 IAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKIMQESLEELQNDAEFESLFENEADRKK 961
Query: 680 -----KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYG 733
K V ID ++ LP Y++ E E +N +K AE + L +F L ++G
Sbjct: 962 LFKSSKDVNIDTDLELMLPDSYVSSTE---ERLNLYQKLAEINNKEELKRFEAELEDRFG 1018
Query: 734 KEPYSMEILLKKLYVRRMAADIGITKI 760
P LLK + ++ +AA IG KI
Sbjct: 1019 SLPEEAINLLKSVELKWLAAAIGFEKI 1045
>gi|421874174|ref|ZP_16305781.1| transcription-repair coupling factor [Brevibacillus laterosporus
GI-9]
gi|372456829|emb|CCF15330.1| transcription-repair coupling factor [Brevibacillus laterosporus
GI-9]
Length = 1188
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 241/615 (39%), Positives = 377/615 (61%), Gaps = 22/615 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK----FDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRML 208
L+ GD+VVH GIGK++GI+ + KD Y+ ++YA G + +P+ Q +
Sbjct: 502 LKPGDFVVHINHGIGKYLGIETKEILGIHKD------YLHVQYAGGDSLFVPIDQIDH-V 554
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
+Y + +E +P+ + + W+R K+K + +++ + DL++LY R + + K+
Sbjct: 555 QKY-VGSEEAQPKIYNLGGN--EWKRVKSKVETSVKDIAEDLIKLYAQREQAVGYSFNKD 611
Query: 269 P-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
EF A FPY+ T DQ +A +V+ D+ E + PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 612 SLEQREFEAMFPYQETVDQLRAITEVKADM-ESKRPMDRLVCGDVGYGKTEVAIRAAFKS 670
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V GKQ +L PT +LA+QHF+ ERFS +P I+V +LSRF+S+ E+ + +K G +
Sbjct: 671 VMDGKQVALLVPTTILAQQHFETFKERFSDFP-IRVEVLSRFRSRKEQNATMKGLKEGTV 729
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
++++GTH LL +V+ +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL+
Sbjct: 730 DVVIGTHRLLSKDIVFRDLGLLIVDEEQRFGVSHKEKLKQLKTNVDVLTLTATPIPRTLH 789
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+++ G RD S+I TPP R P++T++ +S V AI+ EL R GQVF++ +++G+E+
Sbjct: 790 MSMLGVRDLSVIETPPENRFPVQTYVLDYSPALVREAIERELAREGQVFFLYNQVQGIEQ 849
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ + P +A+AHGQ +LE + F G +L+ T I+E+G+DI N NT+I
Sbjct: 850 MAEHISALVPDARVAVAHGQMNESELERIILDFLDGNYDVLVSTTIIETGVDIPNVNTLI 909
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ + + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF+
Sbjct: 910 IYNADRMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFK 969
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS--VPYKSVQID 685
+A +D+ IRG G + G +Q G + VG DL+ +ML E++ + P V+I+
Sbjct: 970 IAMRDLSIRGAGNLLGAEQHGFINTVGFDLYTQMLKEAIDDLRGEVRTEEIAPVPPVEIN 1029
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ I+ LPS+YI +EM + A I L + L ++G P ++ LL
Sbjct: 1030 LQIDAYLPSDYITDSRQKIEMYKKF--VATSTIEELDDLADELIDRFGNIPSPVDNLLMI 1087
Query: 746 LYVRRMAADIGITKI 760
+R A + I +I
Sbjct: 1088 SRLRIQAMEHHIVEI 1102
>gi|408419796|ref|YP_006761210.1| transcription-repair-coupling factor Mfd [Desulfobacula toluolica
Tol2]
gi|405107009|emb|CCK80506.1| Mfd: transcription-repair-coupling factor [Desulfobacula toluolica
Tol2]
Length = 1164
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 250/628 (39%), Positives = 376/628 (59%), Gaps = 24/628 (3%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYAD-GMAKLPVKQASR 206
+ P L++GD VVH + G+G++ G+ V S +++ I Y D LPV +
Sbjct: 496 ITPEELKNGDIVVHIEHGVGQYEGLCSLSVNGISQ---DFILILYQDKDKLYLPVDRIE- 551
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-----LKQK 261
M+ +Y + + P L K+ + AW + K K K ++K+ DL+ LY R
Sbjct: 552 MIGKY-IGVDGYTP-VLDKIG-SKAWIKSKAKAKEEVEKLAADLLNLYAKRKVNNGFSFS 608
Query: 262 RPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
RP N +F A FPYE T DQ KA DV D+ E E PMDRL+CGDVG+GKTEVA+
Sbjct: 609 RPDNYYN----DFEAAFPYEETRDQLKAIDDVHLDM-ESEIPMDRLVCGDVGYGKTEVAI 663
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F V+ KQ V+ PT +LA+QH ERF++YP + + LSRF+++ E+ +
Sbjct: 664 RAAFKAVNDAKQVAVVVPTTILAEQHLSTFRERFAQYP-VHIECLSRFRTRKEQARIIKA 722
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
I+ G ++I++GTH LL + + +LGLLV+DEEQRFGVK KE + + SVDVL L+ATP
Sbjct: 723 IRSGLVDIVIGTHRLLQKDIDFKSLGLLVIDEEQRFGVKHKEALKKKRSSVDVLALTATP 782
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL+++LTG RD S+I+TPP +R PI +++S + V A+K EL R GQ+F+V
Sbjct: 783 IPRTLHMSLTGMRDISVITTPPADRQPIISYISKYEDPIVKDAVKRELSRNGQIFFVHNN 842
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
IK + + L++ P IA+AHG+ +LE+ M KF I +L+CT I+ESGLDI
Sbjct: 843 IKTIFKVSQNLEKLVPEARIAVAHGRLSETELEKVMLKFVNLEIDVLVCTTIIESGLDIP 902
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
+ANT+I+ + FGL+Q+YQLRGR+GR D +A+AYLF D+S L+ A +RLAAL E ++
Sbjct: 903 SANTMIINKAEHFGLSQIYQLRGRIGRGDHQAYAYLFVSDESRLTKDAKKRLAALMEYKD 962
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS 681
LG GFQ+A KD+ IRG GT G Q+G + VG D+F ++L +++ + I P +
Sbjct: 963 LGSGFQIAMKDLQIRGAGTALGASQSGHIAAVGYDMFLKLLDQAVHDLKGEDNIE-PLEP 1021
Query: 682 VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
+I+ +++ P +YI +E + + + + + + L +YGK P E
Sbjct: 1022 -EINASMSSGFPDDYIESVEQRLTVYRRLSRITM--VSDISDMKKELTDRYGKLPKEAEN 1078
Query: 742 LLKKLYVRRMAADIGITKIYASGKMVGM 769
+L K+ +R G+ ++ S ++ +
Sbjct: 1079 MLLKIMLRVYCIKAGVQRLDISPNILTL 1106
>gi|333394472|ref|ZP_08476291.1| transcription-repair coupling factor [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
gi|420146318|ref|ZP_14653744.1| Transcription-repair coupling factor [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
gi|398401980|gb|EJN55385.1| Transcription-repair coupling factor [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
Length = 1173
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/702 (36%), Positives = 406/702 (57%), Gaps = 51/702 (7%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNL 213
L GDYVVH GIGK+VG++ ++ D +Y+ I Y D AKL + + L + +
Sbjct: 497 LNPGDYVVHVNHGIGKYVGMQ-TLEVDGAHQ-DYITILYQDN-AKLFIPVSQLNLVQKYV 553
Query: 214 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIA 272
+E K PR ++KL + W + K K I+ + DL+ELY R +K + P N
Sbjct: 554 ASEGKTPR-VNKLGGS-EWAKTKRKVSSKIEDIADDLIELYAQREAEKGYAFSPDNEYQR 611
Query: 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 332
EF FPY T DQ ++ +++ D+ ER PMDRL+ GDVGFGKTEVALRAIF + GK
Sbjct: 612 EFEDAFPYTETDDQLRSVAEIKHDM-ERPKPMDRLLVGDVGFGKTEVALRAIFKAIQDGK 670
Query: 333 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392
QA L PT +LA+QHFD + +RF+ +P ++V LLSRF++ + + L IK G ++++G
Sbjct: 671 QAAFLVPTTILAQQHFDTMMQRFADFP-VQVELLSRFRTAKQIKASLAAIKSGQADVVIG 729
Query: 393 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTG 452
TH +L V + +LGLLVVDEEQRFGVK KE++ + + +VDVLT++ATPIPRTL +++ G
Sbjct: 730 THRILSKDVEFRDLGLLVVDEEQRFGVKAKERLKTLRSNVDVLTMTATPIPRTLNMSMVG 789
Query: 453 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 512
RD S+I TPP R P++T++ + + S I+ EL RGGQVFY+ R++ +E + +
Sbjct: 790 VRDLSVIETPPANRYPVQTYVMEQNAGALRSGIERELARGGQVFYLHNRVEDIERTVANI 849
Query: 513 QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 572
+ P + AHGQ QLE T+ +F G +++ T I+E+G+++ N NT+ V+D
Sbjct: 850 EALVPEATVTYAHGQMTEAQLENTLYEFVHGQYDVIVTTTIIENGVNMPNVNTLFVEDAD 909
Query: 573 QFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKD 632
GLAQLYQLRGRVGR+ + +AY Y +L++ + +RLAA+ + ELG GF++A +D
Sbjct: 910 HMGLAQLYQLRGRVGRSSRVGYAYFMYRQDKVLTEISEKRLAAIRDFTELGSGFKIAMRD 969
Query: 633 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL 692
+ IRG G + G+QQ G + +VG DL+ +ML +++++ V + ++D+ I L
Sbjct: 970 LSIRGAGNLLGKQQHGFIDSVGYDLYSQMLADAVAQKQGKAVQA--KSDAELDLGIEAYL 1027
Query: 693 PSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
PSEYI +E+ V E A+ L + L ++G P + LL
Sbjct: 1028 PSEYITDQRQKIELYKRVRELSSPAD-----LEELQADLFDRFGDYPDPVAHLLA----- 1077
Query: 750 RMAADIGITKIYASGKMV-----------------GMKTNMNKKVFKMMIDSMTSEVHRN 792
IG+ K+YA +V G + + VFK +++ +
Sbjct: 1078 -----IGLLKVYADQALVERIRHVDQQLRVKLSAKGTRQIAPEDVFK----ALSKTKLKA 1128
Query: 793 SLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIK 834
++ +GD++ L+++ P+ + +W+ + L + L A+++
Sbjct: 1129 TVKMDGDKLVITLIIQ-PKMRQPDWL-EELTQFLTGLAAIVQ 1168
>gi|228912793|ref|ZP_04076441.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228846853|gb|EEM91857.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 1176
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|49479988|ref|YP_034406.1| transcription-repair coupling factor [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49331544|gb|AAT62190.1| transcription-repair coupling factor [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 1178
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 495 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 551
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 552 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 607
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 608 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 666
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 667 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 725
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 726 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 785
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 786 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 845
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 846 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 905
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 906 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 965
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 966 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1021
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1022 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1077
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1078 VGYLLQIANIKVLA 1091
>gi|416999467|ref|ZP_11939989.1| transcription-repair coupling factor [Veillonella parvula
ACS-068-V-Sch12]
gi|333976757|gb|EGL77621.1| transcription-repair coupling factor [Veillonella parvula
ACS-068-V-Sch12]
Length = 1098
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 245/544 (45%), Positives = 352/544 (64%), Gaps = 18/544 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNL 213
L GDYVVH GIGK++GIK + + +Y+ I YA G KL + + + +
Sbjct: 425 LTPGDYVVHSMHGIGKYIGIK--TIETEGIHRDYIEIAYA-GTDKLFLPANNLDQLQKYI 481
Query: 214 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIA 272
NE PR ++K+ W + TK K +I + L+E+Y R + + P P
Sbjct: 482 GNEGDVPR-INKMGGRD-WAKVVTKAKKSIDDLADKLVEIYAQREITEGFAFLPDQPWQQ 539
Query: 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 332
EF FPYE T DQ +A +++ + ER PMDRL+ GDVGFGKTEVA+RAIF V +GK
Sbjct: 540 EFEDAFPYEETEDQLQATAEIKESM-ERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGK 598
Query: 333 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392
Q VL PT VLA+QHF RF+ + +KV +L+RF++ +EK++ L ++ G ++I++G
Sbjct: 599 QVAVLVPTTVLAQQHFQTFLNRFAPF-GVKVDVLNRFRTTSEKKQILKGVEDGSIDILIG 657
Query: 393 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTG 452
THSLL +VV+ +LG+LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++L G
Sbjct: 658 THSLLNKKVVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVG 717
Query: 453 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 512
R+ S+I+TPP ERLP++T++ + + AIK EL RGGQV++V R+ + + L
Sbjct: 718 VREMSVINTPPEERLPVQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGELL 777
Query: 513 QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 572
+ A PG+ A+AHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+ D
Sbjct: 778 ESALPGLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDAD 837
Query: 573 QFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+LA +
Sbjct: 838 RLGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-ILSEAAEKRLKAIEEFTELGAGFKLAMR 896
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G++ +VG ++ ML E+++K K V+ D++I+P
Sbjct: 897 DLEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQN--------KEVERDVSIDPA 948
Query: 692 LPSE 695
+ E
Sbjct: 949 IDLE 952
>gi|423450073|ref|ZP_17426952.1| transcription-repair coupling factor [Bacillus cereus BAG5O-1]
gi|423542535|ref|ZP_17518925.1| transcription-repair coupling factor [Bacillus cereus HuB4-10]
gi|401127080|gb|EJQ34810.1| transcription-repair coupling factor [Bacillus cereus BAG5O-1]
gi|401168331|gb|EJQ75596.1| transcription-repair coupling factor [Bacillus cereus HuB4-10]
Length = 1176
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 382/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETDDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E L +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETLKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVS--TIEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|392988402|ref|YP_006486995.1| transcription-repair coupling factor [Enterococcus hirae ATCC 9790]
gi|392335822|gb|AFM70104.1| transcription-repair coupling factor [Enterococcus hirae ATCC 9790]
Length = 1173
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 230/556 (41%), Positives = 364/556 (65%), Gaps = 13/556 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E+K PR ++KL ++ W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASESKAPR-INKLG-SSEWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDGYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F V
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAVKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + VGLLSRF++K +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNVGLLSRFRTKKQQKETIEQLRTGQIDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL+VDEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIVDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFDFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFES-LSKVDEHCVISVPYKSVQIDININP 690
D+ IRG G + G QQ G + VG D++ +ML ++ L K ++ V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSDAVLRKQGKNN--QVEKTAVEIDLGVDA 1027
Query: 691 RLPSEYINHLENPMEM 706
LP EY++ +E+
Sbjct: 1028 YLPEEYVSDQRQKIEI 1043
>gi|30260244|ref|NP_842621.1| transcription-repair coupling factor [Bacillus anthracis str. Ames]
gi|47525306|ref|YP_016655.1| transcription-repair coupling factor [Bacillus anthracis str. 'Ames
Ancestor']
gi|49183087|ref|YP_026339.1| transcription-repair coupling factor [Bacillus anthracis str. Sterne]
gi|65317513|ref|ZP_00390472.1| COG1197: Transcription-repair coupling factor (superfamily II
helicase) [Bacillus anthracis str. A2012]
gi|165872560|ref|ZP_02217192.1| transcription-repair coupling factor [Bacillus anthracis str. A0488]
gi|167635067|ref|ZP_02393384.1| transcription-repair coupling factor [Bacillus anthracis str. A0442]
gi|167641515|ref|ZP_02399763.1| transcription-repair coupling factor [Bacillus anthracis str. A0193]
gi|170688877|ref|ZP_02880079.1| transcription-repair coupling factor [Bacillus anthracis str. A0465]
gi|170707542|ref|ZP_02897995.1| transcription-repair coupling factor [Bacillus anthracis str. A0389]
gi|177655328|ref|ZP_02936857.1| transcription-repair coupling factor [Bacillus anthracis str. A0174]
gi|190568951|ref|ZP_03021852.1| transcription-repair coupling factor [Bacillus anthracis str.
Tsiankovskii-I]
gi|227812727|ref|YP_002812736.1| transcription-repair coupling factor [Bacillus anthracis str. CDC
684]
gi|229603766|ref|YP_002864705.1| transcription-repair coupling factor [Bacillus anthracis str. A0248]
gi|254682320|ref|ZP_05146181.1| transcription-repair coupling factor [Bacillus anthracis str.
CNEVA-9066]
gi|254735455|ref|ZP_05193163.1| transcription-repair coupling factor [Bacillus anthracis str. Western
North America USA6153]
gi|254744643|ref|ZP_05202322.1| transcription-repair coupling factor [Bacillus anthracis str. Kruger
B]
gi|254756348|ref|ZP_05208377.1| transcription-repair coupling factor [Bacillus anthracis str. Vollum]
gi|254762404|ref|ZP_05214246.1| transcription-repair coupling factor [Bacillus anthracis str.
Australia 94]
gi|386733921|ref|YP_006207102.1| transcription-repair coupling factor [Bacillus anthracis str. H9401]
gi|421510670|ref|ZP_15957559.1| transcription-repair coupling factor [Bacillus anthracis str. UR-1]
gi|421640743|ref|ZP_16081321.1| transcription-repair coupling factor [Bacillus anthracis str. BF1]
gi|30253565|gb|AAP24107.1| transcription-repair coupling factor [Bacillus anthracis str. Ames]
gi|47500454|gb|AAT29130.1| transcription-repair coupling factor [Bacillus anthracis str. 'Ames
Ancestor']
gi|49177014|gb|AAT52390.1| transcription-repair coupling factor [Bacillus anthracis str. Sterne]
gi|164711688|gb|EDR17233.1| transcription-repair coupling factor [Bacillus anthracis str. A0488]
gi|167510500|gb|EDR85898.1| transcription-repair coupling factor [Bacillus anthracis str. A0193]
gi|167529541|gb|EDR92291.1| transcription-repair coupling factor [Bacillus anthracis str. A0442]
gi|170127538|gb|EDS96412.1| transcription-repair coupling factor [Bacillus anthracis str. A0389]
gi|170667101|gb|EDT17862.1| transcription-repair coupling factor [Bacillus anthracis str. A0465]
gi|172080169|gb|EDT65262.1| transcription-repair coupling factor [Bacillus anthracis str. A0174]
gi|190559875|gb|EDV13859.1| transcription-repair coupling factor [Bacillus anthracis str.
Tsiankovskii-I]
gi|227004902|gb|ACP14645.1| transcription-repair coupling factor [Bacillus anthracis str. CDC
684]
gi|229268174|gb|ACQ49811.1| transcription-repair coupling factor [Bacillus anthracis str. A0248]
gi|384383773|gb|AFH81434.1| Transcription-repair coupling factor [Bacillus anthracis str. H9401]
gi|401819291|gb|EJT18472.1| transcription-repair coupling factor [Bacillus anthracis str. UR-1]
gi|403392122|gb|EJY89380.1| transcription-repair coupling factor [Bacillus anthracis str. BF1]
Length = 1176
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|196036345|ref|ZP_03103742.1| transcription-repair coupling factor [Bacillus cereus W]
gi|196041756|ref|ZP_03109046.1| transcription-repair coupling factor [Bacillus cereus NVH0597-99]
gi|196047377|ref|ZP_03114590.1| transcription-repair coupling factor [Bacillus cereus 03BB108]
gi|218901255|ref|YP_002449089.1| transcription-repair coupling factor [Bacillus cereus AH820]
gi|225862106|ref|YP_002747484.1| transcription-repair coupling factor [Bacillus cereus 03BB102]
gi|228925307|ref|ZP_04088404.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228931556|ref|ZP_04094463.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228943860|ref|ZP_04106246.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229089185|ref|ZP_04220467.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-42]
gi|229119716|ref|ZP_04248978.1| Transcription-repair-coupling factor [Bacillus cereus 95/8201]
gi|229182448|ref|ZP_04309700.1| Transcription-repair-coupling factor [Bacillus cereus BGSC 6E1]
gi|301051789|ref|YP_003790000.1| transcription-repair coupling factor [Bacillus cereus biovar
anthracis str. CI]
gi|376264081|ref|YP_005116793.1| transcription-repair coupling factor [Bacillus cereus F837/76]
gi|423554013|ref|ZP_17530339.1| transcription-repair coupling factor [Bacillus cereus ISP3191]
gi|195990975|gb|EDX54946.1| transcription-repair coupling factor [Bacillus cereus W]
gi|196021779|gb|EDX60473.1| transcription-repair coupling factor [Bacillus cereus 03BB108]
gi|196027376|gb|EDX65993.1| transcription-repair coupling factor [Bacillus cereus NVH0597-99]
gi|218538935|gb|ACK91333.1| transcription-repair coupling factor [Bacillus cereus AH820]
gi|225786910|gb|ACO27127.1| transcription-repair coupling factor [Bacillus cereus 03BB102]
gi|228601028|gb|EEK58596.1| Transcription-repair-coupling factor [Bacillus cereus BGSC 6E1]
gi|228663741|gb|EEL19319.1| Transcription-repair-coupling factor [Bacillus cereus 95/8201]
gi|228694148|gb|EEL47829.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-42]
gi|228815817|gb|EEM62052.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228828108|gb|EEM73835.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228834354|gb|EEM79894.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|300373958|gb|ADK02862.1| transcription-repair coupling factor [Bacillus cereus biovar
anthracis str. CI]
gi|364509881|gb|AEW53280.1| Transcription-repair coupling factor [Bacillus cereus F837/76]
gi|401182094|gb|EJQ89236.1| transcription-repair coupling factor [Bacillus cereus ISP3191]
Length = 1176
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|228898807|ref|ZP_04063090.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
4222]
gi|402562855|ref|YP_006605579.1| transcription-repair coupling factor [Bacillus thuringiensis HD-771]
gi|423364616|ref|ZP_17342085.1| transcription-repair coupling factor [Bacillus cereus VD022]
gi|434378696|ref|YP_006613340.1| transcription-repair coupling factor [Bacillus thuringiensis HD-789]
gi|228860832|gb|EEN05209.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL
4222]
gi|401072728|gb|EJP81190.1| transcription-repair coupling factor [Bacillus cereus VD022]
gi|401791507|gb|AFQ17546.1| transcription-repair coupling factor [Bacillus thuringiensis HD-771]
gi|401877253|gb|AFQ29420.1| transcription-repair coupling factor [Bacillus thuringiensis HD-789]
Length = 1176
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTIDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|312144318|ref|YP_003995764.1| transcription-repair coupling factor [Halanaerobium hydrogeniformans]
gi|311904969|gb|ADQ15410.1| transcription-repair coupling factor [Halanaerobium hydrogeniformans]
Length = 1164
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 246/625 (39%), Positives = 384/625 (61%), Gaps = 30/625 (4%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
L +GDYVVH+ GIGK++G+K ++Q +Y+ ++YA G KL V L +
Sbjct: 496 DLIAGDYVVHENHGIGKYLGVKTLEIQGQHK---DYLVLKYA-GEDKLYVPTDKINLVQK 551
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +++ P+ L KL ++ W++ K K + ++++M + L+ELY R K +P++
Sbjct: 552 YIGSDSGSPK-LYKLG-SSDWKKVKEKVEKSVKEMAIGLLELYAERETLKGYKFPEDDLW 609
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF FP+ TPDQ+KA +V+ D+ E E PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 610 QKEFEDAFPFHETPDQQKAIKEVKSDM-ESEQPMDRLLCGDVGYGKTEVAIRAAFKAALD 668
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ VL PT +LA+QHF+ +R +P I++ +LSRF++KAE+ + L + G ++I+
Sbjct: 669 GKQTAVLVPTTILAQQHFNTFEDRIEDFP-IRISMLSRFKTKAEQRKTLKELIKGEVDIV 727
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH LL V++++LGLL++DEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++AL
Sbjct: 728 IGTHRLLSKDVIFDDLGLLIIDEEQRFGVTHKEKLKDIKRNVDVLTLTATPIPRTLHMAL 787
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD SLI TPP R PI+T + + E + A++ EL R GQ+++V R++ +E+
Sbjct: 788 VGVRDMSLIETPPENRYPIRTFIKEKNHELIAGAVRRELAREGQIYFVHNRVEDIEKIAG 847
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
LQ+ P IA+AHGQ ++LE+ M F IL+CT I+E+GLDI N NTII+
Sbjct: 848 KLQKIVPEAKIAVAHGQMKEKRLEKIMYNFYHHKFDILVCTTIIETGLDIPNVNTIIINH 907
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR ++ A+AYL Y +L++ A +RL A++E LG GF++A
Sbjct: 908 ADKMGLSQLYQLRGRVGRTNRIAYAYLLYKRDRILAEVAEKRLEAIKEFSSLGSGFKIAM 967
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML---FESL--SKVDEHCVISVPYKSVQID 685
+D+ IRG G + G +Q+G + VG L+ ++L E L K D+ +V++D
Sbjct: 968 RDLEIRGAGNLLGPEQSGHIAAVGFSLYTKLLEGTIEDLKGEKKDDKI-------TVEVD 1020
Query: 686 ININPRLPSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
+ ++ +P +YI + +E+ + + AA+ + + L ++G+ P + L
Sbjct: 1021 LRVDAYIPDDYIKYEARKIEIYKKIRDIHSAADA-----VDVVDELIDRFGEPPKEVMRL 1075
Query: 743 LKKLYVRRMAADIGITKIYASGKMV 767
+ ++ +A + I I GK +
Sbjct: 1076 INTARLKILAQKLKIQLIRQEGKNI 1100
>gi|229077333|ref|ZP_04210009.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-2]
gi|228705971|gb|EEL58283.1| Transcription-repair-coupling factor [Bacillus cereus Rock4-2]
Length = 968
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 285 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 341
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 342 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 397
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 398 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 456
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 457 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 515
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 516 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 575
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 576 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 635
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 636 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 695
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 696 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 755
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 756 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENIV---- 811
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 812 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 867
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 868 VGYLLQIANIKVLA 881
>gi|402554360|ref|YP_006595631.1| transcription-repair coupling factor [Bacillus cereus FRI-35]
gi|401795570|gb|AFQ09429.1| transcription-repair coupling factor [Bacillus cereus FRI-35]
Length = 1176
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|46198841|ref|YP_004508.1| transcription-repair coupling factor [Thermus thermophilus HB27]
gi|46196464|gb|AAS80881.1| transcription-repair coupling factor [Thermus thermophilus HB27]
Length = 978
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/615 (41%), Positives = 365/615 (59%), Gaps = 20/615 (3%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRML 208
DP +L GDY++H + G+G+++G+ + ++ V +Y+ + Y +G LPV+Q +L
Sbjct: 315 DPGALSPGDYLIHPEHGVGQYLGL--ETREVLGVKRDYLVLRYKGEGKLYLPVEQLP-LL 371
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK---QKRPPY 265
R+ P T P LS L W+R K K + ++++ L+ L R + PP
Sbjct: 372 KRH--PGTTDDPPELSSLGKNE-WQRAKEKARKDVEELAGRLLVLQAKRKATPGRAFPPL 428
Query: 266 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
P+ + E FPYE TPDQK+A +V RDL E PMDRL+ GDVGFGKTEVALRA
Sbjct: 429 PEWDPLVE--KGFPYELTPDQKRALEEVLRDL-ESPHPMDRLVSGDVGFGKTEVALRAAH 485
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
VV G Q L PT +LA+QH ERF P ++V +LSRF E+E L + G
Sbjct: 486 RVVGHGAQVAFLVPTTLLAEQHGKTFRERFQGLP-VRVAVLSRFTPPKEEEAILKGLAEG 544
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++I++GTH LL V + +LGLL+VDEE RFGV QKE+I K VD L LSATPIPRT
Sbjct: 545 TVDIVIGTHRLLQEDVRFRDLGLLIVDEEHRFGVAQKERIRELKAEVDTLYLSATPIPRT 604
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
LY AL G +D S I TPPP R PIKT L+ F V AI +EL+RGG+VFYV R+ +
Sbjct: 605 LYSALVGLKDLSSIQTPPPGRKPIKTFLAPFDPLLVREAILFELERGGKVFYVHDRVASI 664
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
E FL+ P I + HGQ +EETM FA+GA +L+ T I+E+GLD+ ANT
Sbjct: 665 EARRRFLESLVPEARIGVVHGQMPESLIEETMLLFAEGAYDVLLATTIIEAGLDVPEANT 724
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
I+++ + GLA LYQLRGRVGR ++EA+AYLF+P + L++ A +RLAA+ + +LG G
Sbjct: 725 ILIERADRLGLATLYQLRGRVGRREEEAYAYLFHPPR--LTEAAEKRLAAIADLSDLGSG 782
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
LAE+DM IRG G + G +Q G + + ++++ E+L E++ K+ + + V +D
Sbjct: 783 HLLAERDMEIRGVGNLLGPEQHGHIRALSLEVYTELLEEAIRKLKGE--VKEERRHVTLD 840
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ ++ RLP+EY+ LE + +A + + L + L+ +YG P E +
Sbjct: 841 LALSARLPAEYVGSLEARSRYYSRFAEA--KSLAELSRLVRELKERYGPLPEEAENFVAL 898
Query: 746 LYVRRMAADIGITKI 760
+R +A G+ I
Sbjct: 899 ARLRLVAERKGVVSI 913
>gi|260893903|ref|YP_003240000.1| transcription-repair coupling factor [Ammonifex degensii KC4]
gi|260866044|gb|ACX53150.1| transcription-repair coupling factor [Ammonifex degensii KC4]
Length = 1123
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/628 (40%), Positives = 374/628 (59%), Gaps = 24/628 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVG-IKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRY 211
+ G+YVVH + GIG + G ++ V+ V EY I+YA + LP Q +L RY
Sbjct: 460 FKPGEYVVHPEHGIGIYRGLVQLSVE---GVTREYALIQYAGEDRLYLPADQLG-VLERY 515
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
+ E +PR LS+L W+R + + K A + +L+ LY R K + P P
Sbjct: 516 -VGGEGAKPR-LSRLGGGE-WKRVRARVKQAATDVARELLRLYAMRETAKGHAFSPDTPW 572
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF A FPYE TPDQ +A DV+ D+ E+ PMDRLICGDVGFGKTE+ALRA F V
Sbjct: 573 QREFEAAFPYEETPDQLRAIADVKADM-EKPRPMDRLICGDVGFGKTEIALRAAFKAVMD 631
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ VL PT +LA+QH+ S RF+ YP I+V L RFQ+ AE+ E + +K G ++I+
Sbjct: 632 GKQVAVLVPTTILAQQHYRTFSSRFAPYP-IRVAWLCRFQTPAEQREVIKGLKAGTIDIV 690
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH LL + V + +LGL+++DEEQRFGV QKEK+ + VDVLTL+ATPIPRTLY++L
Sbjct: 691 IGTHRLLQNDVQFRDLGLVIIDEEQRFGVLQKEKLKLLRKEVDVLTLTATPIPRTLYMSL 750
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S ++TPPP+RLP++T++ + AI+ EL RGGQV++V R+ G+ E +
Sbjct: 751 VGLRDTSCLTTPPPDRLPVETYVVEEDPAIIREAIRRELARGGQVYFVYNRVAGIVEVAN 810
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+++ P +A AHGQ LE M F +L+ T IVE+GLDI N NT+IV+D
Sbjct: 811 WVKHLVPEARVAYAHGQMPEAALERIMLDFIDHKYDVLVATTIVENGLDIGNVNTLIVKD 870
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
Q GL+QLYQLRGRVGR ++ A+AY Y ++++ A RL A+++ LG GF++A+
Sbjct: 871 ADQLGLSQLYQLRGRVGRTNRLAYAYFLYRRDKIINEAAKARLRAIKDFTSLGAGFKVAK 930
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G +Q G + VG++L+ +L E++ ++ V VP I++ ++
Sbjct: 931 RDLEIRGAGNLLGTEQHGHIQAVGLELYCRLLQEAIKELKGEEV--VPPVDPVIELTVSA 988
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+P +Y+ + +E+ E +A + + E R +YG P LL +R
Sbjct: 989 YIPDDYVP-FDQKLEIYQELSRAETPE--EVEGLAEGYRDRYGPFPPPFRNLLAVARLRA 1045
Query: 751 MAADIGITKIYASGKMVGMKTNMNKKVF 778
A + + K++G + + VF
Sbjct: 1046 QAKRLRL-------KLIGRQGGFYRLVF 1066
>gi|228905850|ref|ZP_04069748.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL 200]
gi|228853790|gb|EEM98549.1| Transcription-repair-coupling factor [Bacillus thuringiensis IBL 200]
Length = 1176
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTIDIVIGTHRILSKDVAYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|384177959|ref|YP_005563721.1| transcription-repair coupling factor [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324324043|gb|ADY19303.1| transcription-repair coupling factor [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 1176
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|228919004|ref|ZP_04082384.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228840653|gb|EEM85914.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 1176
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENIV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|417314259|ref|ZP_12100964.1| transcription-repair coupling factor [Listeria monocytogenes J1816]
gi|328467970|gb|EGF38997.1| transcription-repair coupling factor [Listeria monocytogenes J1816]
Length = 1179
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 263/699 (37%), Positives = 406/699 (58%), Gaps = 49/699 (7%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L+ GDYVVH GI ++VG++ D+ + V +Y+ + Y G KL PV Q
Sbjct: 494 RIQSYSELKVGDYVVHVNHGIARYVGMETLDI---NGVHKDYLLLVY-QGEDKLFIPVDQ 549
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L + + E K PR L+KL W+R K K + ++Q + DL++LY R +K
Sbjct: 550 LD--LVQKYVGAEGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ + + EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALR
Sbjct: 606 AFSADDEMQREFEEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALR 664
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +
Sbjct: 665 AAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGM 723
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G ++++VGTH LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPI
Sbjct: 724 KNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPI 783
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R+
Sbjct: 784 PRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRV 843
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + D + P +A AHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 844 ESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPN 903
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+ VQD + GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E EL
Sbjct: 904 VNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTEL 963
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ K E VP
Sbjct: 964 GSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP-- 1021
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+IDI + +P YI +EM + + L + ++G+ P +E
Sbjct: 1022 -VEIDIQADAYIPEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVE 1078
Query: 741 ILLKKLYVRRMAADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTS 787
L ++ A ++ IT +++ G++ ++ ++ F M+
Sbjct: 1079 YLFTMTELKVHALEVSIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----- 1133
Query: 788 EVHRNSLTFEGDQIKAELLLELPREQLLNWIFQC--LAE 824
+ EG Q+K + + + + L W++Q LAE
Sbjct: 1134 -----GVGMEGTQLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|218895189|ref|YP_002443600.1| transcription-repair coupling factor [Bacillus cereus G9842]
gi|423565589|ref|ZP_17541864.1| transcription-repair coupling factor [Bacillus cereus MSX-A1]
gi|218545395|gb|ACK97789.1| transcription-repair coupling factor [Bacillus cereus G9842]
gi|401193666|gb|EJR00670.1| transcription-repair coupling factor [Bacillus cereus MSX-A1]
Length = 1176
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTIDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|418703935|ref|ZP_13264817.1| transcription-repair coupling factor [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410766419|gb|EKR37104.1| transcription-repair coupling factor [Leptospira interrogans serovar
Hebdomadis str. R499]
Length = 1186
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/623 (39%), Positives = 391/623 (62%), Gaps = 21/623 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRMLYRYN 212
L+ GDYVVH G+GKF +K + +++ +EY+ G + +P+ Q S ++ RY
Sbjct: 520 LKEGDYVVHIHHGVGKF--LKIERTSAGGKERDFLKLEYSGGDSLFVPLDQIS-LVQRYI 576
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E+ R +L K + W++ K + + A++ + DL+++Y +RLK + +P +
Sbjct: 577 GGTESPRLDSLGK----STWKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQ 632
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG
Sbjct: 633 EEFEAEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAG 691
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
+Q M+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++V
Sbjct: 692 RQIMMLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVV 750
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH++L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALT
Sbjct: 751 GTHAILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALT 810
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G R+ S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++
Sbjct: 811 GIRELSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNY 870
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L + P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+
Sbjct: 871 LSKLVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRA 930
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +
Sbjct: 931 DLFGLSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMR 990
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININP 690
D+ IRG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N
Sbjct: 991 DLEIRGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNF 1047
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYV 748
+P YI+ +E + E A +D+ + + + ++G+ P + ILL+K +
Sbjct: 1048 FIPETYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--I 1103
Query: 749 RRMAADIGITKIYASGKMVGMKT 771
R +A+++G + + MK+
Sbjct: 1104 RTLASNLGFEFVTEMKDEIKMKS 1126
>gi|423387018|ref|ZP_17364273.1| transcription-repair coupling factor [Bacillus cereus BAG1X1-2]
gi|401630272|gb|EJS48078.1| transcription-repair coupling factor [Bacillus cereus BAG1X1-2]
Length = 1176
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTIDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|24215213|ref|NP_712694.1| transcription-repair coupling factor [Leptospira interrogans serovar
Lai str. 56601]
gi|386074517|ref|YP_005988834.1| transcription-repair coupling factor [Leptospira interrogans serovar
Lai str. IPAV]
gi|418670253|ref|ZP_13231625.1| transcription-repair coupling factor [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|24196293|gb|AAN49712.1|AE011418_8 transcription-repair coupling factor [Leptospira interrogans serovar
Lai str. 56601]
gi|353458306|gb|AER02851.1| transcription-repair coupling factor [Leptospira interrogans serovar
Lai str. IPAV]
gi|410754024|gb|EKR15681.1| transcription-repair coupling factor [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
Length = 1186
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/623 (39%), Positives = 391/623 (62%), Gaps = 21/623 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRMLYRYN 212
L+ GDYVVH G+GKF +K + +++ +EY+ G + +P+ Q S ++ RY
Sbjct: 520 LKEGDYVVHIHHGVGKF--LKIERTSAGGKERDFLKLEYSGGDSLFVPLDQIS-LVQRYI 576
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E+ R +L K + W++ K + + A++ + DL+++Y +RLK + +P +
Sbjct: 577 GGTESPRLDSLGK----STWKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQ 632
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG
Sbjct: 633 EEFEAEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAG 691
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
+Q M+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++V
Sbjct: 692 RQIMMLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVV 750
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH++L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALT
Sbjct: 751 GTHAILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALT 810
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G R+ S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++
Sbjct: 811 GIRELSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNY 870
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L + P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+
Sbjct: 871 LSKLVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRA 930
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +
Sbjct: 931 DLFGLSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMR 990
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININP 690
D+ IRG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N
Sbjct: 991 DLEIRGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNF 1047
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYV 748
+P YI+ +E + E A +D+ + + + ++G+ P + ILL+K +
Sbjct: 1048 FIPETYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--I 1103
Query: 749 RRMAADIGITKIYASGKMVGMKT 771
R +A+++G + + MK+
Sbjct: 1104 RTLASNLGFEFVTEMKDEIKMKS 1126
>gi|431792128|ref|YP_007219033.1| transcription-repair coupling factor Mfd [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430782354|gb|AGA67637.1| transcription-repair coupling factor Mfd [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 1223
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 249/620 (40%), Positives = 377/620 (60%), Gaps = 41/620 (6%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYR 210
L+ GD+VVH + GIG+F+GI K V V +Y ++YA G KL P+ Q + +L +
Sbjct: 549 LKPGDFVVHVQHGIGQFMGIEKIAV---GGVDKDYFSVKYA-GQDKLYVPLDQLN-LLQK 603
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK-QKRPPYPKNP 269
Y + P+ L KL + W+R K K K AI++M DL++LY R Q N
Sbjct: 604 YLGGDADTLPK-LYKLGGSD-WKRVKAKAKNAIKEMAFDLVKLYAQREAIQGYAFSADNV 661
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF +FPY+ TPDQ + ++V+ D+ R PMDRL+CGDVG+GKTEVALRA F V
Sbjct: 662 WQQEFEEKFPYQETPDQMQCIIEVKEDMM-RTRPMDRLLCGDVGYGKTEVALRAAFKAVM 720
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
KQ VL PT +LA+QH++ ERF YP + + +LSRF++ E++ L +K G ++I
Sbjct: 721 DSKQVAVLVPTTILAQQHYNTFLERFMGYP-VSIQMLSRFRTTKEQKLILQGLKEGAIDI 779
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
+VGTH L+ + + +LGLL+VDEEQRFGV KEK+ + K +VDVLTLSATPIPRTL+++
Sbjct: 780 VVGTHKLVSESIKFKDLGLLIVDEEQRFGVSHKEKLKTLKTNVDVLTLSATPIPRTLHMS 839
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
L G RD S+I TPP +R P++T+++ F + V AI+ E+ RGGQVF+V R++ +++ +
Sbjct: 840 LVGVRDLSVIDTPPEDRFPVQTYVAEFRPDVVREAIRREIQRGGQVFFVHNRVEDMDQVV 899
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
FL Q P IAHGQ ++LE M F + +L+CT I+E+GLD+ N NT+I+
Sbjct: 900 RFLSQLVPEARYEIAHGQMSEKELERGMLNFLEQESDVLVCTTIIETGLDMPNVNTLIID 959
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
+ + GL QLYQLRGRVGR++++A++Y Y + +LS+ A +RLAA+ E E G G ++A
Sbjct: 960 EADRLGLGQLYQLRGRVGRSNRKAYSYFLYKPQKILSEVAEKRLAAIREFTEFGSGLKIA 1019
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL-----SKVDEHCVISVPYKSVQI 684
+D+ IRG G + G QQ G + +G +L+ +ML E++ KV+E S I
Sbjct: 1020 MRDLEIRGAGNLVGAQQHGHLAALGFELYSQMLKEAVQEIKGEKVEERIETS-------I 1072
Query: 685 DININPRLPSEYINH-------LENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPY 737
++ ++ LP Y+ + + + NE + ++ + L ++G P
Sbjct: 1073 EVAVDAYLPDSYVGERKLKAALYQRMISIDNEEDHSS---------MIDELIDRFGAPPR 1123
Query: 738 SMEILLKKLYVRRMAADIGI 757
+E LLK + ++ A+ + I
Sbjct: 1124 EVENLLKIVRIKWCASALKI 1143
>gi|423526648|ref|ZP_17503093.1| transcription-repair coupling factor [Bacillus cereus HuB1-1]
gi|402455141|gb|EJV86925.1| transcription-repair coupling factor [Bacillus cereus HuB1-1]
Length = 1176
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTIDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|260437494|ref|ZP_05791310.1| transcription-repair coupling factor [Butyrivibrio crossotus DSM
2876]
gi|292810127|gb|EFF69332.1| transcription-repair coupling factor [Butyrivibrio crossotus DSM
2876]
Length = 1177
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 249/623 (39%), Positives = 380/623 (60%), Gaps = 14/623 (2%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLY 209
D L GDYV+H+ G+G + GI+ ++ D T +Y+ IEYA+G + M+
Sbjct: 498 DFSELSIGDYVIHENHGLGIYRGIE-KIRVDKTEK-DYIKIEYANGGNLYILATQLDMIQ 555
Query: 210 RYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN- 268
+Y E +P+ L++L ++ W + KTK + A++++ L++LY R ++ + K+
Sbjct: 556 KYG-DREGAKPK-LNRLG-SSEWTKTKTKVRGAVKQVADKLIKLYASRSARQGFAFSKDT 612
Query: 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328
P EF FPYEPT DQ A +++ D+ E MDRLICGDVGFGKTEVALRA F V
Sbjct: 613 PWQQEFEELFPYEPTTDQLTAIEEIKTDM-ESTRIMDRLICGDVGFGKTEVALRAAFKAV 671
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 388
KQ + L PT +LAKQ F R + ++V +LSRF + E + ++ +K G ++
Sbjct: 672 QDNKQVVYLCPTTILAKQIFTNFDSRMKDFG-VEVRMLSRFCTPKEAKNTIEGLKKGLVD 730
Query: 389 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 448
++VGTH +L V + NLGLL++DEEQRFGV KEKI K SVDV+TLSATPIPRTL++
Sbjct: 731 VVVGTHKILSKDVSFKNLGLLIIDEEQRFGVAHKEKIKQMKESVDVITLSATPIPRTLHM 790
Query: 449 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 508
+L G RD S++ PP +R+PI+T ++ + +E V A+ EL RGGQV+YV ++ G++E
Sbjct: 791 SLIGIRDMSVLMEPPVDRIPIQTFVTEYDEEMVREAVNRELARGGQVYYVYNKVLGIDEI 850
Query: 509 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 568
+ + P ++A AHGQ R+LE+ M F G I +L+ T I+E+GLDI N NTII+
Sbjct: 851 TLNIAKLVPEANVAFAHGQMSERELEKIMMDFINGDIDVLVSTTIIETGLDIPNVNTIII 910
Query: 569 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 628
D ++GL+QLYQLRGRVGR + A+A+L Y +LS+ A +RL+A+ E +LG GF++
Sbjct: 911 HDANKYGLSQLYQLRGRVGRTGRMAYAFLMYKKDKVLSEIAEKRLSAIREFTDLGSGFRI 970
Query: 629 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDINI 688
A KD+ IRG G + GE+Q G + VG DL+ +ML E++ ++ I Y++V +DI++
Sbjct: 971 AMKDLEIRGAGNMLGEEQHGHMEAVGYDLYCKMLNEAVLELKGEGTIE-DYETV-VDIDV 1028
Query: 689 NPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
+ +P+ YI +++ A E+D L T+ L ++G P IL+
Sbjct: 1029 DAYIPATYIRSENQKLDIYKRIAAIETEED---LADMTDELIDRFGDIPKPAVILMSIAL 1085
Query: 748 VRRMAADIGITKIYASGKMVGMK 770
++ IT+I + K + ++
Sbjct: 1086 LKSKCHSNYITEIKGNRKEIKIR 1108
>gi|228956495|ref|ZP_04118292.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228803185|gb|EEM50006.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 1183
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 500 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 556
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 557 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 612
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 613 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 671
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 672 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 730
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 731 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 790
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 791 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 850
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 851 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQYDVLVSTTIIETGVDIPNV 910
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 911 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 970
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 971 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENIV---- 1026
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1027 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1082
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1083 VGYLLQIANIKVLA 1096
>gi|392400259|ref|YP_006436859.1| transcription-repair coupling factor [Corynebacterium
pseudotuberculosis Cp162]
gi|390531337|gb|AFM07066.1| Transcription-repair-coupling factor [Corynebacterium
pseudotuberculosis Cp162]
Length = 1227
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/699 (36%), Positives = 402/699 (57%), Gaps = 29/699 (4%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI--KFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
+VDP +L++GD+VVH+ GIG+F+ + + D T EY+ +EYA P Q
Sbjct: 476 RVDPLALKTGDFVVHETHGIGRFLKMTERTITSGDETSRREYIVLEYAPAKRGQPADQLF 535
Query: 206 RMLYRYNLPNE---TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
+ +L ++ ++P LSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 536 VPMDSLDLLSKYVGGEKP-ALSKMGGSD-WKNTKKKARAAVREIAGELVELYAKRQSAPG 593
Query: 263 PPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
P+ P +P E FPY T DQ A V+ D+ E+ PMDR+I GDVG+GKTEVA+
Sbjct: 594 HPFAPDSPWQYEMEDNFPYVETEDQMMAIEAVKADM-EKPVPMDRVIVGDVGYGKTEVAV 652
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F V GKQ +VL PT +LA+QH ER + +P + + LSRF S E +E +
Sbjct: 653 RAAFKAVQDGKQVVVLVPTTLLAQQHLSTFDERMAGFP-VNLRGLSRFTSTVEAKETIKG 711
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+ G ++I++GTH LL + + + NLGL++VDEEQRFGV+ KE I + + VDVLT+SATP
Sbjct: 712 LADGTVDIVIGTHRLLQTGIQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATP 771
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL +++ G R+ S I TPP +R PI T++ A +++ +AI+ EL R GQVF+V +
Sbjct: 772 IPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQIAAAIRRELLRDGQVFFVHNK 831
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
+ +E+ L++ P I +AHGQ LE+T++ F +L+CT IVE+GLDI
Sbjct: 832 VSDIEKKARDLRELVPEARIVVAHGQMSEELLEQTVQGFWGREFDVLVCTTIVETGLDIA 891
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP L++ + +RLA + + +
Sbjct: 892 NANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGQTLTENSYDRLATIAQNND 951
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISV 677
LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D V +
Sbjct: 952 LGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYMRLVGEAVEAYRALADGKIVDAT 1011
Query: 678 PY--KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKE 735
K ++ID++++ +P YIN +E+ + AA Q L+ E + +YG
Sbjct: 1012 DDGPKEIRIDLSVDAHIPESYINAERLRLEVYRKL--AASQSNADLILAVEEMEDRYGPL 1069
Query: 736 PYSMEILLKKLYVRRMAADIGITKIYASG---KMVGMKTNMNKKV-FKMMIDSMTSEVHR 791
P ++ LL +R +A GI+ I G K+ ++ +K+V K ++ S T
Sbjct: 1070 PEEVKRLLAVARLRHLAKSAGISDIGVQGTRIKIHPVELPDSKQVRLKRLLPSATYRAAA 1129
Query: 792 NSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
++ EG + + L ++ LL W+ L+E++
Sbjct: 1130 KAIQLSFPKEGRNVTDKPLRDV---ALLQWVADFLSEMF 1165
>gi|42779132|ref|NP_976379.1| transcription-repair coupling factor [Bacillus cereus ATCC 10987]
gi|206977924|ref|ZP_03238811.1| transcription-repair coupling factor [Bacillus cereus H3081.97]
gi|217957629|ref|YP_002336171.1| transcription-repair coupling factor [Bacillus cereus AH187]
gi|222093823|ref|YP_002527872.1| transcription-repair coupling factor [Bacillus cereus Q1]
gi|229136900|ref|ZP_04265528.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST26]
gi|375282150|ref|YP_005102583.1| transcription-repair coupling factor [Bacillus cereus NC7401]
gi|423357803|ref|ZP_17335395.1| transcription-repair coupling factor [Bacillus cereus IS075]
gi|423374893|ref|ZP_17352230.1| transcription-repair coupling factor [Bacillus cereus AND1407]
gi|423572004|ref|ZP_17548220.1| transcription-repair coupling factor [Bacillus cereus MSX-A12]
gi|42735047|gb|AAS38987.1| transcription-repair coupling factor [Bacillus cereus ATCC 10987]
gi|206743830|gb|EDZ55250.1| transcription-repair coupling factor [Bacillus cereus H3081.97]
gi|217067660|gb|ACJ81910.1| transcription-repair coupling factor [Bacillus cereus AH187]
gi|221237870|gb|ACM10580.1| transcription-repair coupling factor [Bacillus cereus Q1]
gi|228646565|gb|EEL02771.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST26]
gi|358350671|dbj|BAL15843.1| transcription-repair coupling factor [Bacillus cereus NC7401]
gi|401073984|gb|EJP82392.1| transcription-repair coupling factor [Bacillus cereus IS075]
gi|401093375|gb|EJQ01476.1| transcription-repair coupling factor [Bacillus cereus AND1407]
gi|401199138|gb|EJR06048.1| transcription-repair coupling factor [Bacillus cereus MSX-A12]
Length = 1176
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|30018324|ref|NP_829955.1| transcription-repair coupling factor [Bacillus cereus ATCC 14579]
gi|229125571|ref|ZP_04254604.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-Cer4]
gi|29893864|gb|AAP07156.1| Transcription-repair coupling factor [Bacillus cereus ATCC 14579]
gi|228657888|gb|EEL13693.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-Cer4]
Length = 1176
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENIV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|326790211|ref|YP_004308032.1| transcription-repair coupling factor [Clostridium lentocellum DSM
5427]
gi|326540975|gb|ADZ82834.1| transcription-repair coupling factor [Clostridium lentocellum DSM
5427]
Length = 1179
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/646 (39%), Positives = 388/646 (60%), Gaps = 13/646 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNL 213
L GDYVVH++ GIG F G++ V + + + + IEYAD M+ +Y +
Sbjct: 511 LAPGDYVVHEQHGIGVFKGVEQLVIEG--ISRDNLKIEYADNNVLYVNINQMDMVQKY-V 567
Query: 214 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-A 272
+E K P+ LSKL + W++ K K K AIQ + +L++LY R + Y ++
Sbjct: 568 GSEGKAPK-LSKLGGSE-WKKSKAKVKGAIQNIAKELVKLYSQRQYSRGFCYEEDTIWQK 625
Query: 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 332
EF A FPYE T DQ +A DV++D+ E + MDRLICGDVG+GKTEVA+RA F V K
Sbjct: 626 EFEAMFPYEETGDQLEAIEDVKKDM-ESDKIMDRLICGDVGYGKTEVAIRAAFKAVQNSK 684
Query: 333 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392
Q L PT +LA+QH+ +ER + YP I + LLSRF++ + ++ L+ + G ++IIVG
Sbjct: 685 QVAYLVPTTILAQQHYQRFAERMADYP-ITIELLSRFRTPKQIKKSLEGLASGKVDIIVG 743
Query: 393 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTG 452
TH LL V + +LGL+++DEEQRFGV KEK+ + VDV+ L+ATPIPRTL+++L G
Sbjct: 744 THRLLSKDVQFKDLGLVIIDEEQRFGVTHKEKLKQLRTQVDVMNLTATPIPRTLHMSLIG 803
Query: 453 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 512
RD S++ P ER P++T++ +S++ + AI EL RGGQV+++ ++K +EE +
Sbjct: 804 IRDMSVLEEAPVERKPVQTYVIEYSEDFIKDAINRELTRGGQVYFLHNQVKDIEEKAHAI 863
Query: 513 QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 572
Q+ P +A AHGQ R+LE+ M +F +G I +L+CT I+E+GLDI NANTII+
Sbjct: 864 QELIPKARVAFAHGQMSERELEQIMLRFIEGEIDVLVCTTIIETGLDISNANTIIMNHAD 923
Query: 573 QFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKD 632
+ GL+QLYQLRGRVGR+ + +AYL Y +L + A +RL A+++ ELG GF++A +D
Sbjct: 924 RMGLSQLYQLRGRVGRSSRMGYAYLMYQKDKVLKEVAEKRLQAIKQFTELGAGFKIAMRD 983
Query: 633 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL 692
+ IRG G + G QQ G + ++G DL+ +ML E +S+ V + Y++ I+I +N +
Sbjct: 984 LEIRGAGNLLGAQQHGHMESIGYDLYCKMLAEVVSEERGEEV-AEEYETT-IEIKLNAYI 1041
Query: 693 PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMA 752
P YI +++ + + + +Q E + +YG P ++ LL ++ MA
Sbjct: 1042 PGSYIPDEIQKLDIYKKIASIKNETDYLDVQ--EEIEDRYGNIPVAVYNLLDIALIKAMA 1099
Query: 753 ADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEG 798
D+ I + + K V K N + + + E RN L F G
Sbjct: 1100 HDLYIILVSENNKHVTFKFKENAPLNAEKVPEILKEYGRN-LKFVG 1144
>gi|228970242|ref|ZP_04130902.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|384184136|ref|YP_005570032.1| transcription-repair coupling factor [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410672425|ref|YP_006924796.1| transcription-repair-coupling factor Mfd [Bacillus thuringiensis
Bt407]
gi|452196429|ref|YP_007476510.1| Transcription-repair coupling factor [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228789477|gb|EEM37396.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|326937845|gb|AEA13741.1| transcription-repair coupling factor [Bacillus thuringiensis serovar
chinensis CT-43]
gi|409171554|gb|AFV15859.1| transcription-repair-coupling factor Mfd [Bacillus thuringiensis
Bt407]
gi|452101822|gb|AGF98761.1| Transcription-repair coupling factor [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 1176
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTIDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|300858127|ref|YP_003783110.1| transcription-repair-coupling factor [Corynebacterium
pseudotuberculosis FRC41]
gi|300685581|gb|ADK28503.1| transcription-repair-coupling factor [Corynebacterium
pseudotuberculosis FRC41]
Length = 1265
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/699 (36%), Positives = 401/699 (57%), Gaps = 29/699 (4%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI--KFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
+VDP +L++GD+VVH+ GIG+F+ + + D T EY+ +EYA P Q
Sbjct: 514 RVDPLALKTGDFVVHETHGIGRFLKMTERTITSGDETSRREYIVLEYAPAKRGQPADQLF 573
Query: 206 RMLYRYNLPNE---TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
+ +L ++ ++P LSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 574 VPMDSLDLLSKYVGGEKP-ALSKMGGSD-WKNTKKKARAAVREIAGELVELYAKRQSAPG 631
Query: 263 PPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
P+ P +P E FPY T DQ A V+ D+ E+ PMDR+I GDVG+GKTEVA+
Sbjct: 632 HPFAPDSPWQYEMEDNFPYVETEDQMMAIEAVKADM-EKPVPMDRVIVGDVGYGKTEVAV 690
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F V GKQ +VL PT +LA+QH ER + +P + + LSRF S E +E +
Sbjct: 691 RAAFKAVQDGKQVVVLVPTTLLAQQHLSTFDERMAGFP-VNLRGLSRFTSTVEAKETIKG 749
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+ G ++I++GTH LL + + + NLGL++VDEEQRFGV+ KE I + + VDVLT+SATP
Sbjct: 750 LADGTVDIVIGTHRLLQTGIQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATP 809
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL +++ G R+ S I TPP +R PI T++ A +++ +AI+ EL R GQVF+V +
Sbjct: 810 IPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQIAAAIRRELLRDGQVFFVHNK 869
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
+ +E+ L++ P I +AHGQ LE+T++ F +L+CT IVE+GLDI
Sbjct: 870 VSDIEKKARDLRELVPEARIVVAHGQMSEELLEQTVQGFWDREFDVLVCTTIVETGLDIA 929
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP L++ + +RLA + + +
Sbjct: 930 NANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGQTLTENSYDRLATIAQNND 989
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISV 677
LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D V +
Sbjct: 990 LGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADGKIVDAT 1049
Query: 678 P--YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKE 735
K ++ID+ ++ +P YIN +E+ + AA Q L+ E + +YG
Sbjct: 1050 DDGLKEIRIDLPVDAHIPESYINAERLRLEVYRKL--AASQSNADLILAVEEMEDRYGPL 1107
Query: 736 PYSMEILLKKLYVRRMAADIGITKIYASG---KMVGMKTNMNKKV-FKMMIDSMTSEVHR 791
P ++ LL +R +A GI+ I G K+ ++ +K+V K ++ S T
Sbjct: 1108 PEEVKRLLAVARLRHLAKSAGISDIGVQGTRIKIHPVELPDSKQVRLKRLLPSATYRAAA 1167
Query: 792 NSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
++ EG + + L ++ LL W+ L+E++
Sbjct: 1168 KAIQLSFPKEGRNVTDKPLRDV---ALLQWVADFLSEMF 1203
>gi|229188339|ref|ZP_04315388.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 10876]
gi|228595138|gb|EEK52908.1| Transcription-repair-coupling factor [Bacillus cereus ATCC 10876]
Length = 1176
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENIV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|114777171|ref|ZP_01452182.1| transcription-repair coupling factor [Mariprofundus ferrooxydans
PV-1]
gi|114552316|gb|EAU54799.1| transcription-repair coupling factor [Mariprofundus ferrooxydans
PV-1]
Length = 1109
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 246/614 (40%), Positives = 370/614 (60%), Gaps = 19/614 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYAD-GMAKLPVKQASRMLYRYN 212
L+ GD VVH+ G+G++ G++ + +D + +++ IEYAD +PV++ +R L+RY
Sbjct: 445 LKPGDPVVHEDHGVGRYHGLE-TIDEDGDL-ADFIKIEYADKAHVFVPVEELAR-LHRYT 501
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY----PKN 268
+ L+KL + W+R + + K + M +L+++ R RPP P
Sbjct: 502 GEDAP----ALNKLG-SEKWKRTRERVKRDLLAMAHELIDIEAARTSASRPPCLLQGPLL 556
Query: 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328
A EFAA+FP+E T DQ +A V DL + PMDR+ICGDVGFGKTEVA+RA F V
Sbjct: 557 DAYEEFAARFPFEETDDQAQAIDAVLTDLA-LDKPMDRVICGDVGFGKTEVAMRAAFVVA 615
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 388
+G+Q VLAPT VLA QH+ +ERF D+KV ++SR Q K E E+ + G +
Sbjct: 616 ESGRQVAVLAPTTVLANQHYASFAERFIGT-DLKVAMISRLQGKKEVEQICRGLAGGDIR 674
Query: 389 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 448
IIVGTH LL + +LG+++VDEEQRFGVK K+K+ S SVD+LTL+ATPIPRTL+
Sbjct: 675 IIVGTHRLLSDTFEFADLGMVIVDEEQRFGVKHKQKLKSLHASVDLLTLTATPIPRTLHQ 734
Query: 449 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 508
++G R S+ISTPP ER I+T +S+F AI+ EL RGGQV+Y+ ++ +E
Sbjct: 735 TMSGLRSVSIISTPPAEREAIRTMVSSFDPHIAREAIRRELYRGGQVYYLHNHVQSIERI 794
Query: 509 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 568
L++ P +I IAHGQ +L+ M F +G + IL+CT I+ESGLD+ NANT+IV
Sbjct: 795 TARLREDVPEAEIGIAHGQMTPAELDRQMLAFYEGRLHILVCTTIIESGLDVANANTLIV 854
Query: 569 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 628
+ GL+QL+Q+RGRVGR+ ++A+AYLF PD ++ A ERL A+ E ELG GF L
Sbjct: 855 ERADLLGLSQLHQIRGRVGRSHRQAYAYLFTPDARAMTADARERLQAIAEHSELGAGFLL 914
Query: 629 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDINI 688
A +DM IRG G + G +Q+G + +G+D++ +ML +++++ + P + + + + +
Sbjct: 915 ARQDMEIRGAGNLLGAEQSGRIDEIGLDMYLDMLSDAVAEA--RGKMPKPKQPLDMHLGV 972
Query: 689 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
N LP +Y+ + + + A+ D + F E R +G P + L+ +
Sbjct: 973 NAILPPDYMPQAGERLNLYRRIAR-ADDDSQITLLFEEMTDR-FGHMPDEAKYCLENARI 1030
Query: 749 RRMAADIGITKIYA 762
R A + ++ I A
Sbjct: 1031 RWRAQALHLSGIRA 1044
>gi|377831056|ref|ZP_09814044.1| transcription-repair coupling factor [Lactobacillus mucosae LM1]
gi|377555153|gb|EHT16844.1| transcription-repair coupling factor [Lactobacillus mucosae LM1]
Length = 1192
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/572 (40%), Positives = 361/572 (63%), Gaps = 13/572 (2%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYAD-GMAKLPVKQASRMLYRY 211
L+ GDYVVH GIG F GIK + +Y+ I Y + +PV Q L +
Sbjct: 496 DLKPGDYVVHVNHGIGIFSGIKTMTVDGANQ--DYMVINYRNHAQIFVPVTQLD--LVQK 551
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E K P +++L T W + K + ++ + +L++LY R +K +PK+ +
Sbjct: 552 YVASEGKVPH-VNRLGGTE-WAKTKARVAARVEDIADELVDLYAARETEKGYAFPKDDYL 609
Query: 272 AE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E F A+FPY+ TPDQ ++ +++ D+ E E PMDRL+ GDVG+GKTEVALRA+F V
Sbjct: 610 QEKFEAEFPYQETPDQLRSIKEIKADM-ESERPMDRLLVGDVGYGKTEVALRAVFKAVLG 668
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH+D + RF +P I++ ++SRF++ + +E +K+G ++++
Sbjct: 669 GKQVAFLVPTTILAQQHYDTMKSRFEGFP-IEIAMMSRFRTPKQLKETEAGLKNGKIDVV 727
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
VGTH LL V +N+LGLLV+DEEQRFGVK KE++ K ++DVLTL+ATPIPRTL++++
Sbjct: 728 VGTHRLLSKDVQFNDLGLLVIDEEQRFGVKHKERLKQLKNNIDVLTLTATPIPRTLHMSM 787
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+I TPP +R PI+T++ ++ + I EL RGGQV+Y+ R+ +E +
Sbjct: 788 MGVRDLSVIETPPADRYPIQTYVMEQNQAAIRDGILRELQRGGQVYYLHNRVNDIERTVA 847
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
LQ+ P I HG+ QLE + F QG +L+ T+I+E+G+DI N NT+ V++
Sbjct: 848 ELQELVPEARIGYIHGKMTEAQLEGVLYDFIQGEDDVLVTTSIIETGVDIANVNTLFVEN 907
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQ+RGR+GR+++ A+AY Y +L++ +RLAA+ + ELG GF++A
Sbjct: 908 ADRMGLSQLYQIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELGSGFKIAM 967
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G+QQ G + +VG DL+ EML E+++K + + P + +IDIN+
Sbjct: 968 RDLAIRGAGNLLGKQQHGFIDSVGYDLYAEMLSEAVAK--KRGQVKKPIANTEIDINVEA 1025
Query: 691 RLPSEYINHLENPMEMVNEAEKA-AEQDIWCL 721
LP EY++ + + + +A ++Q++ L
Sbjct: 1026 YLPDEYVSDSRQKIALYKQVRQAKSDQELLDL 1057
>gi|357053333|ref|ZP_09114429.1| transcription-repair coupling factor [Clostridium clostridioforme
2_1_49FAA]
gi|355385808|gb|EHG32856.1| transcription-repair coupling factor [Clostridium clostridioforme
2_1_49FAA]
Length = 1200
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 244/628 (38%), Positives = 386/628 (61%), Gaps = 17/628 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRM--LYR 210
L GDYVVH++ G+G + GI+ V++D + +Y+ IEY DG LP A+R+ + +
Sbjct: 529 LSVGDYVVHEEHGLGIYKGIE-KVERDKVIK-DYIKIEYGDGGNLYLP---ATRLESIQK 583
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNP 269
Y E K+P+ L+KL W + KT+ + A+Q++ DL++LY R ++ Y P
Sbjct: 584 YA-GAEAKKPK-LNKLG-GAEWNKTKTRVRGAVQEIAKDLVKLYAARQEKAGFQYGPDTV 640
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF FPY+ T DQ A V++D+ R+ MDRLICGDVG+GKTEVALRA F V
Sbjct: 641 WQREFEELFPYDETDDQMDAIDAVKKDMESRKI-MDRLICGDVGYGKTEVALRAAFKAVQ 699
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
KQ + L PT +LA+QH++ +R +P ++V +LSRF + A ++ L+ ++ G ++I
Sbjct: 700 DSKQVVYLVPTTILAQQHYNTFVQRMKDFP-VRVDMLSRFCTPARQKRTLEDLRKGMVDI 758
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH +L + + +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL+++
Sbjct: 759 VIGTHRVLSKDMQFKDLGLLIIDEEQRFGVAHKEKIKHLKENVDVLTLTATPIPRTLHMS 818
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
L G RD S++ PP +R+PI+T++ +++E V AI EL R GQV+YV R+ ++E
Sbjct: 819 LAGIRDMSVLEEPPVDRMPIQTYVMEYNEEMVREAINRELARNGQVYYVYNRVTDIDEVA 878
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+Q P + AHGQ +LE M F G I +L+ T I+E+GLDI NANT+I+
Sbjct: 879 GRVQALVPDAVVTFAHGQMREHELERIMADFINGEIDVLVSTTIIETGLDIPNANTMIIH 938
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GL+QLYQLRGRVGR+++ ++A+L Y LL ++A +RL A+ E ELG G ++A
Sbjct: 939 DADRMGLSQLYQLRGRVGRSNRTSYAFLMYKRDKLLREEAEKRLQAIREFTELGSGIKIA 998
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G + G +Q G + VG DL+ +ML +++ + + Y++V ++ +I+
Sbjct: 999 MRDLEIRGAGNVLGAEQHGHMEAVGYDLYCKMLNQAVLALKGETLEEDSYETV-VECDID 1057
Query: 690 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+P YI + +++ ++ + MQ + L ++G P+S+E LLK +R
Sbjct: 1058 AYIPGRYIKNEYQKLDIYKRISAIETEEEYMDMQ--DELMDRFGDIPHSVENLLKIAAIR 1115
Query: 750 RMAADIGITKIYASGKMVGMKTNMNKKV 777
+A +T++ + + V + + K+
Sbjct: 1116 ALAHRAYVTEVVINRQEVRLTMHQKAKL 1143
>gi|212637897|ref|YP_002314417.1| transcription-repair coupling factor [Anoxybacillus flavithermus WK1]
gi|212559377|gb|ACJ32432.1| Transcription-repair coupling factor (helicase, mfd) [Anoxybacillus
flavithermus WK1]
Length = 1189
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 235/555 (42%), Positives = 355/555 (63%), Gaps = 12/555 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRMLYRYN 212
L+ GDYVVH GIGK++GI + + + V +Y+ I+Y + +PV Q L +
Sbjct: 519 LKVGDYVVHVNHGIGKYLGI--ETLEINGVHKDYIHIQYQGNDTLYVPVDQMD--LVQKY 574
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K P+ + KL T W++ K K + ++Q + DLM+LY R K + P N
Sbjct: 575 VGSEGKEPK-IYKLGGT-EWKKVKKKVESSVQDIAEDLMKLYAEREASKGYAFSPDNEMQ 632
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A FPY+ T DQ ++ +++RD+ E E PMDRL+CGDVG+GKTEVALRA F + G
Sbjct: 633 REFEAAFPYQETEDQLRSIREIKRDM-ESERPMDRLLCGDVGYGKTEVALRAAFKAIMDG 691
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ V ERF YP I V LLSRF++K ++ E + +K G +++++
Sbjct: 692 KQVAFLVPTTILAQQHYETVRERFQGYP-IHVSLLSRFRTKKQQTETIQGLKDGTIDMVI 750
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIPRTL+++L
Sbjct: 751 GTHRLLSKDVSFKDLGLLIIDEEQRFGVAHKEKIKQLKTNIDVLTLTATPIPRTLHMSLI 810
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T++ +S V AI+ E+ RGGQVF++ R++ ++ +
Sbjct: 811 GVRDLSVIETPPENRFPVQTYVMEYSPIIVREAIEREMARGGQVFFLYNRVEDIDRKAEE 870
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+ P + AHG+ +LE M F +G +L+ T I+E+G+DI N NT+IV D
Sbjct: 871 ISALVPDARVTYAHGRMSEHELEAVMLAFLEGQYDVLVSTTIIETGVDIPNVNTLIVYDA 930
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +
Sbjct: 931 DKMGLSQLYQLRGRVGRSNRIAYAYFTYRKDKVLNEIAEKRLQAIKEFTELGSGFKIAMR 990
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + +VG +L+ +ML E++ + P++ V+ID+ ++
Sbjct: 991 DLSIRGAGNLLGAQQHGFIDSVGFELYSQMLKEAIEE-KRGTKQEKPFE-VEIDLEVDAY 1048
Query: 692 LPSEYINHLENPMEM 706
+P YI + + +EM
Sbjct: 1049 IPEHYIANEQQKIEM 1063
>gi|294794147|ref|ZP_06759284.1| transcription-repair coupling factor [Veillonella sp. 3_1_44]
gi|294455717|gb|EFG24089.1| transcription-repair coupling factor [Veillonella sp. 3_1_44]
Length = 1098
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 245/544 (45%), Positives = 352/544 (64%), Gaps = 18/544 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNL 213
L GDYVVH GIGK++G+K + + +Y+ I YA G KL + + + +
Sbjct: 425 LTPGDYVVHNMHGIGKYIGLK--TIETEGIHRDYIEIAYA-GTDKLFLPANNLDQLQKYI 481
Query: 214 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPAIA 272
NE PR ++K+ W + TK K +I + L+E+Y R + + P P
Sbjct: 482 GNEGDVPR-INKMGGRD-WSKVVTKAKKSIDDLADKLVEIYAQREITEGFAFLPDQPWQQ 539
Query: 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 332
EF FPYE T DQ +A +++ + ER PMDRL+ GDVGFGKTEVA+RAIF V +GK
Sbjct: 540 EFEDAFPYEETKDQLQATAEIKESM-ERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGK 598
Query: 333 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392
Q VL PT VLA+QHF RF+ + +KV +L+RF++ +EK++ L ++ G ++I++G
Sbjct: 599 QVAVLVPTTVLAQQHFQTFLNRFAPF-GVKVDVLNRFRTTSEKKQILKGVEDGSIDILIG 657
Query: 393 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTG 452
THSLL +VV+ +LG+LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++L G
Sbjct: 658 THSLLNKKVVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVG 717
Query: 453 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 512
R+ S+I+TPP ERLP++T++ + + AIK EL RGGQV++V R+ + + L
Sbjct: 718 VREMSVINTPPEERLPVQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGELL 777
Query: 513 QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 572
+ A PG+ AIAHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+ D
Sbjct: 778 ESALPGLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDAD 837
Query: 573 QFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+LA +
Sbjct: 838 RLGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-ILSEAAEKRLKAIEEFTELGAGFKLAMR 896
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G++ +VG ++ ML E+++K K V+ D++I+P
Sbjct: 897 DLEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQN--------KEVERDVSIDPA 948
Query: 692 LPSE 695
+ E
Sbjct: 949 IDLE 952
>gi|423583703|ref|ZP_17559814.1| transcription-repair coupling factor [Bacillus cereus VD014]
gi|423633616|ref|ZP_17609269.1| transcription-repair coupling factor [Bacillus cereus VD156]
gi|401208335|gb|EJR15102.1| transcription-repair coupling factor [Bacillus cereus VD014]
gi|401283326|gb|EJR89221.1| transcription-repair coupling factor [Bacillus cereus VD156]
Length = 1176
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENIV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|229039959|ref|ZP_04189723.1| Transcription-repair-coupling factor [Bacillus cereus AH676]
gi|229107740|ref|ZP_04237377.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-15]
gi|296500886|ref|YP_003662586.1| transcription-repair coupling factor [Bacillus thuringiensis BMB171]
gi|423589352|ref|ZP_17565438.1| transcription-repair coupling factor [Bacillus cereus VD045]
gi|423644690|ref|ZP_17620307.1| transcription-repair coupling factor [Bacillus cereus VD166]
gi|423651374|ref|ZP_17626944.1| transcription-repair coupling factor [Bacillus cereus VD169]
gi|228675713|gb|EEL30920.1| Transcription-repair-coupling factor [Bacillus cereus Rock1-15]
gi|228727367|gb|EEL78560.1| Transcription-repair-coupling factor [Bacillus cereus AH676]
gi|296321938|gb|ADH04866.1| transcription-repair coupling factor [Bacillus thuringiensis BMB171]
gi|401224005|gb|EJR30565.1| transcription-repair coupling factor [Bacillus cereus VD045]
gi|401269474|gb|EJR75504.1| transcription-repair coupling factor [Bacillus cereus VD166]
gi|401278426|gb|EJR84359.1| transcription-repair coupling factor [Bacillus cereus VD169]
Length = 1176
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENIV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|75759615|ref|ZP_00739701.1| Transcription-repair coupling factor [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74492906|gb|EAO56036.1| Transcription-repair coupling factor [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 1186
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 503 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 559
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 560 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 615
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 616 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 674
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 675 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 733
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 734 DGTIDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 793
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 794 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 853
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 854 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 913
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 914 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 973
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 974 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENTV---- 1029
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1030 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1085
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1086 VGYLLQIANIKVLA 1099
>gi|418692226|ref|ZP_13253305.1| transcription-repair coupling factor [Leptospira interrogans str.
FPW2026]
gi|400358016|gb|EJP14135.1| transcription-repair coupling factor [Leptospira interrogans str.
FPW2026]
Length = 1186
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/623 (39%), Positives = 391/623 (62%), Gaps = 21/623 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRMLYRYN 212
L+ GDYVVH G+GKF +K + +++ +EY+ G + +P+ Q S ++ RY
Sbjct: 520 LKEGDYVVHIHHGVGKF--LKIERTSAGGKERDFLKLEYSGGDSLFVPLDQIS-LVQRYI 576
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E+ R +L K + W++ K + + A++ + DL+++Y +RLK + +P +
Sbjct: 577 GGTESPRLDSLGK----STWKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQ 632
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG
Sbjct: 633 EEFEAEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAG 691
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
+Q M+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++V
Sbjct: 692 RQIMMLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVV 750
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH++L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALT
Sbjct: 751 GTHAILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALT 810
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G R+ S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++
Sbjct: 811 GIRELSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNY 870
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L + P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+
Sbjct: 871 LSKLVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRA 930
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +
Sbjct: 931 DLFGLSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMR 990
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININP 690
D+ IRG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N
Sbjct: 991 DLEIRGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNF 1047
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYV 748
+P YI+ +E + E A +D+ + + + ++G+ P + ILL+K +
Sbjct: 1048 FIPETYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--I 1103
Query: 749 RRMAADIGITKIYASGKMVGMKT 771
R +A+++G + + MK+
Sbjct: 1104 RTLASNLGFEFVTEMKDEIKMKS 1126
>gi|229067818|ref|ZP_04201136.1| Transcription-repair-coupling factor [Bacillus cereus F65185]
gi|228715302|gb|EEL67160.1| Transcription-repair-coupling factor [Bacillus cereus F65185]
Length = 1176
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENIV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|226309690|ref|YP_002769584.1| transcription-repair coupling factor [Brevibacillus brevis NBRC
100599]
gi|226092638|dbj|BAH41080.1| transcription-repair coupling factor [Brevibacillus brevis NBRC
100599]
Length = 1182
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 241/616 (39%), Positives = 379/616 (61%), Gaps = 27/616 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK----FDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRML 208
L+ GD+VVH GIGK++GI+ + KD Y+ I+YA G + +P+ Q +
Sbjct: 502 LKPGDFVVHVNHGIGKYLGIETKEILGIHKD------YLHIQYAAGDSLFVPIDQIDH-V 554
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PK 267
+Y + +E +P+ S + W+R K K + +++ + DL++LY R + P
Sbjct: 555 QKY-VASEEAQPKIYS--LGGSEWKRVKNKVQSSVKDIAEDLIKLYAARESAVGHTFSPD 611
Query: 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
EF A FPY+ T DQ +A +V+ D+ ER+ PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 612 TTEQREFEAMFPYQETQDQLRAISEVKADM-ERKRPMDRLVCGDVGYGKTEVAIRAAFKA 670
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V GKQ VL PT +LA+QH++ ERF++YP I+V +LSRF+S+ E+ L +K G +
Sbjct: 671 VMDGKQVAVLVPTTILAQQHYETFRERFAEYP-IRVEVLSRFRSRKEQNATLKGLKEGTV 729
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
++++GTH LL + + LGLL+VDEEQRFGV KEK+ K +VDV+TL+ATPIPRTL+
Sbjct: 730 DVVIGTHRLLSKDLTFRELGLLIVDEEQRFGVSHKEKLKQIKTNVDVMTLTATPIPRTLH 789
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+++ G RD S+I TPP R P++T++ +S V AI+ E+ R GQVF++ +++G+E+
Sbjct: 790 MSMLGVRDLSVIETPPENRFPVQTYVMDYSPALVREAIEREMARDGQVFFLYNQVQGIEQ 849
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ + P IA+AHGQ +LE + F +G +L+ T I+E+G+DI N NT+I
Sbjct: 850 MAEQISMLVPDARIAVAHGQMNESELEGVILDFLEGNFDVLVSTTIIETGVDIPNVNTLI 909
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ + + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF+
Sbjct: 910 IYNADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFK 969
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD---EHCVISVPYKSVQI 684
+A +D+ IRG G + G +Q G + VG DL+ +ML E++ ++ +H +++ V+I
Sbjct: 970 IAMRDLSIRGAGNLLGAEQHGFINTVGFDLYSQMLKEAIDELKGEVKHEIVT----PVEI 1025
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
++ ++ +PS YI +EM + A + + E L ++G P ++ LL
Sbjct: 1026 NLQLDAYIPSMYITDSRQKIEMYKKF--VAVSTLEDVDDLAEELLDRFGPVPKPVDNLLT 1083
Query: 745 KLYVRRMAADIGITKI 760
+R A IT+I
Sbjct: 1084 ISRLRVYALKHHITEI 1099
>gi|229159227|ref|ZP_04287252.1| Transcription-repair-coupling factor [Bacillus cereus R309803]
gi|228624242|gb|EEK81043.1| Transcription-repair-coupling factor [Bacillus cereus R309803]
Length = 1176
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVS--TIEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|403069022|ref|ZP_10910354.1| transcription-repair coupling factor [Oceanobacillus sp. Ndiop]
Length = 1174
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/650 (37%), Positives = 398/650 (61%), Gaps = 35/650 (5%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRML 208
L+ GDYVVH G+G+++GI+ D+ KD Y+ I+Y+ D +P+ Q L
Sbjct: 499 LKIGDYVVHANHGVGRYLGIETLEVNDLHKD------YMLIKYSGDDKLFVPIDQID--L 550
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
+ + +E K P+ L KL + W + K K + +++ + DL++LY R +K + ++
Sbjct: 551 VQKFVGSEGKEPK-LYKLG-GSEWAKVKRKVQSSVEDIADDLIKLYAEREAKKGFAFSED 608
Query: 269 PAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
+ EF + FPY+ T DQ + ++++D+ E+E PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 609 TEMQREFESSFPYQETEDQLRCIEEIKQDM-EKERPMDRLLCGDVGYGKTEVAIRAAFKA 667
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V+ GKQ +L PT +LA+QHF+ + ERF + I +GLLSRF++K ++ E L+ ++ G +
Sbjct: 668 VADGKQVAILVPTTILAQQHFETIRERFQDHA-INIGLLSRFRTKKQQTETLNGVRKGTV 726
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
++++GTH LL V Y +LGLL+VDEEQRFGVK KEKI K +VDVLTL+ATPIPRTL+
Sbjct: 727 DVVIGTHRLLSKDVEYRDLGLLIVDEEQRFGVKHKEKIKQLKTNVDVLTLTATPIPRTLH 786
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+++ G RD S+I TPP R PI+T++ ++ + AI+ E+ RGGQVF++ R++ +++
Sbjct: 787 MSMLGVRDLSVIETPPENRFPIQTYVMEYNPIFMREAIEREMARGGQVFFLYNRVENIDK 846
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
L IA+AHGQ +LE + F +G +L+ T I+E+G+DI N NT+I
Sbjct: 847 VARDLGMLVGDARIAVAHGQMNENELENVIFGFLEGEYDVLVSTTIIETGVDIPNVNTLI 906
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
V + + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF+
Sbjct: 907 VNNADRMGLSQLYQLRGRVGRSNRVAYAYFTYQKDKVLTEVAEKRLQAIKEFTELGSGFK 966
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKSVQID 685
+A +D+ IRG G + G QQ G + +VG D++ +ML +++ K + P++ ++
Sbjct: 967 IAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLTDAIDARKAGKDIEEITPFEP-ELT 1025
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAA-EQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
+N++ +P EYI + +++ + + + +QDI + + L ++G P + L
Sbjct: 1026 LNLDAYIPDEYIKDEKQKIDIYKQFQGMSLKQDI---EELKDELIDRFGDYPTEVNNLFT 1082
Query: 745 KLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSL 794
+ K++A + V T NKK+ ++ D + ++ + L
Sbjct: 1083 ----------VTSLKMHAKKERVESITERNKKIVVLIEDKRSQQIDGSKL 1122
>gi|418990393|ref|ZP_13538055.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1096]
gi|377723822|gb|EHT47944.1| transcription-repair coupling factor [Staphylococcus aureus subsp.
aureus CIG1096]
Length = 1168
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 238/615 (38%), Positives = 384/615 (62%), Gaps = 15/615 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTENAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGIT 758
+ ++ A GIT
Sbjct: 1077 DIVEIKVHALHSGIT 1091
>gi|418700047|ref|ZP_13260992.1| transcription-repair coupling factor [Leptospira interrogans serovar
Bataviae str. L1111]
gi|410760919|gb|EKR27112.1| transcription-repair coupling factor [Leptospira interrogans serovar
Bataviae str. L1111]
Length = 1180
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/623 (39%), Positives = 391/623 (62%), Gaps = 21/623 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRMLYRYN 212
L+ GDYVVH G+GKF +K + +++ +EY+ G + +P+ Q S ++ RY
Sbjct: 514 LKEGDYVVHIHHGVGKF--LKIERTSAGGKERDFLKLEYSGGDSLFVPLDQIS-LVQRYI 570
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E+ R +L K + W++ K + + A++ + DL+++Y +RLK + +P +
Sbjct: 571 GGTESPRLDSLGK----STWKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQ 626
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG
Sbjct: 627 EEFEAEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAG 685
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
+Q M+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++V
Sbjct: 686 RQIMMLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVV 744
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH++L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALT
Sbjct: 745 GTHAILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALT 804
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G R+ S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++
Sbjct: 805 GIRELSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNY 864
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L + P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+
Sbjct: 865 LSKLVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRA 924
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +
Sbjct: 925 DLFGLSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMR 984
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININP 690
D+ IRG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N
Sbjct: 985 DLEIRGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNF 1041
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYV 748
+P YI+ +E + E A +D+ + + + ++G+ P + ILL+K +
Sbjct: 1042 FIPETYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--I 1097
Query: 749 RRMAADIGITKIYASGKMVGMKT 771
R +A+++G + + MK+
Sbjct: 1098 RTLASNLGFEFVTEMKDEIKMKS 1120
>gi|417783574|ref|ZP_12431292.1| transcription-repair coupling factor [Leptospira interrogans str.
C10069]
gi|418708815|ref|ZP_13269615.1| transcription-repair coupling factor [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418724805|ref|ZP_13283589.1| transcription-repair coupling factor [Leptospira interrogans str. UI
12621]
gi|421124291|ref|ZP_15584551.1| transcription-repair coupling factor [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421136689|ref|ZP_15596787.1| transcription-repair coupling factor [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|409953198|gb|EKO07699.1| transcription-repair coupling factor [Leptospira interrogans str.
C10069]
gi|409961702|gb|EKO25445.1| transcription-repair coupling factor [Leptospira interrogans str. UI
12621]
gi|410019147|gb|EKO85974.1| transcription-repair coupling factor [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410438210|gb|EKP87306.1| transcription-repair coupling factor [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410770745|gb|EKR45958.1| transcription-repair coupling factor [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
Length = 1186
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/623 (39%), Positives = 391/623 (62%), Gaps = 21/623 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRMLYRYN 212
L+ GDYVVH G+GKF +K + +++ +EY+ G + +P+ Q S ++ RY
Sbjct: 520 LKEGDYVVHIHHGVGKF--LKIERTSAGGKERDFLKLEYSGGDSLFVPLDQIS-LVQRYI 576
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E+ R +L K + W++ K + + A++ + DL+++Y +RLK + +P +
Sbjct: 577 GGTESPRLDSLGK----STWKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQ 632
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG
Sbjct: 633 EEFEAEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAG 691
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
+Q M+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++V
Sbjct: 692 RQIMMLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVV 750
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH++L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALT
Sbjct: 751 GTHAILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALT 810
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G R+ S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++
Sbjct: 811 GIRELSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNY 870
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L + P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+
Sbjct: 871 LSKLVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRA 930
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +
Sbjct: 931 DLFGLSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMR 990
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININP 690
D+ IRG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N
Sbjct: 991 DLEIRGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNF 1047
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYV 748
+P YI+ +E + E A +D+ + + + ++G+ P + ILL+K +
Sbjct: 1048 FIPETYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--I 1103
Query: 749 RRMAADIGITKIYASGKMVGMKT 771
R +A+++G + + MK+
Sbjct: 1104 RTLASNLGFEFVTEMKDEIKMKS 1126
>gi|45657330|ref|YP_001416.1| transcription-repair coupling factor [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|421083962|ref|ZP_15544828.1| transcription-repair coupling factor [Leptospira santarosai str.
HAI1594]
gi|421102181|ref|ZP_15562789.1| transcription-repair coupling factor [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|45600568|gb|AAS70053.1| transcription-repair coupling factor [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|410368009|gb|EKP23389.1| transcription-repair coupling factor [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410433509|gb|EKP77854.1| transcription-repair coupling factor [Leptospira santarosai str.
HAI1594]
Length = 1186
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/623 (39%), Positives = 391/623 (62%), Gaps = 21/623 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRMLYRYN 212
L+ GDYVVH G+GKF +K + +++ +EY+ G + +P+ Q S ++ RY
Sbjct: 520 LKEGDYVVHIHHGVGKF--LKIERTSAGGKERDFLKLEYSGGDSLFVPLDQIS-LVQRYI 576
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E+ R +L K + W++ K + + A++ + DL+++Y +RLK + +P +
Sbjct: 577 GGTESPRLDSLGK----STWKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQ 632
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG
Sbjct: 633 EEFEAEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAG 691
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
+Q M+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++V
Sbjct: 692 RQIMMLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVV 750
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH++L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALT
Sbjct: 751 GTHAILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALT 810
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G R+ S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++
Sbjct: 811 GIRELSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNY 870
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L + P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+
Sbjct: 871 LSKLVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRA 930
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +
Sbjct: 931 DLFGLSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMR 990
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININP 690
D+ IRG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N
Sbjct: 991 DLEIRGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNF 1047
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYV 748
+P YI+ +E + E A +D+ + + + ++G+ P + ILL+K +
Sbjct: 1048 FIPETYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--I 1103
Query: 749 RRMAADIGITKIYASGKMVGMKT 771
R +A+++G + + MK+
Sbjct: 1104 RTLASNLGFEFVTEMKDEIKMKS 1126
>gi|228963154|ref|ZP_04124324.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228796539|gb|EEM43977.1| Transcription-repair-coupling factor [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 1067
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 384 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 440
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 441 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 496
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 497 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 555
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 556 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 614
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 615 DGTIDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 674
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 675 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 734
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 735 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 794
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 795 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 854
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 855 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENTV---- 910
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 911 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 966
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 967 VGYLLQIANIKVLA 980
>gi|220930453|ref|YP_002507362.1| transcription-repair coupling factor [Clostridium cellulolyticum H10]
gi|220000781|gb|ACL77382.1| transcription-repair coupling factor [Clostridium cellulolyticum H10]
Length = 1174
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 236/620 (38%), Positives = 392/620 (63%), Gaps = 22/620 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADG-MAKLPV 201
K+ +S L GD+VVH+ GIG+++GI+ +V++D Y+ I Y +G +P
Sbjct: 497 KIKAFSDLNIGDFVVHQAHGIGQYIGIENLSVGEVKRD------YLKIRYQEGDFLYIPT 550
Query: 202 KQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQK 261
Q +L +Y + +E K PR ++KL T W + K++ K ++Q++ +L++LY R K
Sbjct: 551 NQLD-LLQKY-IGSEGKTPR-VNKLG-GTEWAKTKSRVKESLQQLAAELIKLYAQRQSAK 606
Query: 262 RPPYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320
+ ++ +F FPY+ T DQ K ++++D+ E E MDRL+CGDVG+GKTEVA
Sbjct: 607 GHSFSEDTVWQRQFEELFPYQETDDQLKCIDEIKKDM-ESEGLMDRLLCGDVGYGKTEVA 665
Query: 321 LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380
+RA+F V GKQ LAPT +LA+Q ++ R + +P + V ++SRF++ AE+++ +
Sbjct: 666 IRAVFKAVMDGKQVAYLAPTTILAQQLYENFKTRMNDFP-VTVDVMSRFRTPAEQKKIVK 724
Query: 381 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSAT 440
+K G+ +I++GTH LL V + +LGLLV+DEEQRFGV KEK+ + K +VDVLTL+AT
Sbjct: 725 SVKAGNTDILIGTHRLLQKDVEFKDLGLLVIDEEQRFGVTHKEKLKTLKPNVDVLTLTAT 784
Query: 441 PIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLP 500
PIPRTL+++L G RD S++ PP ER P++T++ ++ E + I E+ R GQVFY+
Sbjct: 785 PIPRTLHMSLVGIRDISVLEDPPEERYPVQTYVMEYNMELIRDGIIREMARDGQVFYMYN 844
Query: 501 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
R++G++ +++ P +A+AHG+ ++LE+ M F G +L+CT I+ESGLD+
Sbjct: 845 RVRGIDLKAQEIRKMIPDARVAVAHGKMNEKELEDVMYGFINGEYDVLVCTTIIESGLDM 904
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
N NTI+V+D + GL+QLYQ+RGRVGR+++ A+AY+ Y +LS+ A +RL A++E
Sbjct: 905 PNVNTIVVEDADRMGLSQLYQIRGRVGRSNRLAYAYITYKKDKVLSEVAEKRLQAIKEFT 964
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYK 680
E G GF++A +D+ IRG G + G +Q G + VG +++ ++L E++ ++ V + +
Sbjct: 965 EFGSGFRIAMRDLEIRGAGNLLGSEQHGHLETVGYEMYCKLLDEAVQELSGKEVRTTD-E 1023
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
+ +D+N+N + +EYI+ E ++M + AA Q+ ++ + L +YG P +E
Sbjct: 1024 EMAVDLNVNAYIDNEYISSEEQKIDMYKKI--AAIQNENDVIDLKDELIDRYGDIPEEVE 1081
Query: 741 ILLKKLYVRRMAADIGITKI 760
L+ Y++ +A + G I
Sbjct: 1082 NLMDIAYIKALAVECGFIGI 1101
>gi|47093156|ref|ZP_00230931.1| transcription-repair coupling factor [Listeria monocytogenes str. 4b
H7858]
gi|47018463|gb|EAL09221.1| transcription-repair coupling factor [Listeria monocytogenes serotype
4b str. H7858]
Length = 1179
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 263/699 (37%), Positives = 406/699 (58%), Gaps = 49/699 (7%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQ 203
++ YS L+ GDYVVH GI ++VG++ D+ + V +Y+ + Y G KL PV Q
Sbjct: 494 RIQSYSELKVGDYVVHVNHGIARYVGMETLDI---NGVHKDYLLLVY-QGEDKLFIPVDQ 549
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
L + + E K PR L+KL W+R K K + ++Q + DL++LY R +K
Sbjct: 550 LD--LVQKYVGAEGKSPR-LNKLGGA-EWKRVKKKVQASVQDIADDLIKLYAEREAEKGY 605
Query: 264 PYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
+ + + EF FPY+ T DQ ++ ++++D+ ER PMDRL+ GDVG+GKTEVALR
Sbjct: 606 AFSADDEMQREFEEAFPYQETEDQLRSISEIKKDM-ERPRPMDRLLVGDVGYGKTEVALR 664
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ L PT +LA+QHF+ + ERF +P I++GLLSRF++K ++ E L +
Sbjct: 665 AAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFP-IEIGLLSRFRTKKQQTETLKGM 723
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G ++++VGTH LL V Y +LGLL+VDEEQRFGV KEKI + +DVLTL+ATPI
Sbjct: 724 KNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPI 783
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL++++ G RD S+I TPP R P++T+++ + V AI+ EL R GQV+Y+ R+
Sbjct: 784 PRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRV 843
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ + + D + P +A AHGQ +LE + F +G +L+ T I+E+G+DI N
Sbjct: 844 ESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPN 903
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NT+ VQD + GL+QLYQLRGRVGR ++ A+AY Y +L ++A +RL+A++E EL
Sbjct: 904 VNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTEL 963
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYK 680
G GF++A +D+ IRG G I G QQ G + +VG DL+ +ML E++ K E VP
Sbjct: 964 GSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVP-- 1021
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
V+IDI + +P YI +EM + + L + ++G+ P +E
Sbjct: 1022 -VEIDIQADAYIPEYYITDGRQKIEMYKRFRNI--ETLSELEDLQSDMIDRFGEYPEEVE 1078
Query: 741 ILLKKLYVRRMAADIG----------ITKIYASGKMVGMKTNMNKKV---FKMMIDSMTS 787
L ++ A ++ IT +++ G++ ++ ++ F M+
Sbjct: 1079 YLFTMTELKVHALEVSIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMV----- 1133
Query: 788 EVHRNSLTFEGDQIKAELLLELPREQLLNWIFQC--LAE 824
+ EG Q+K + + + + L W++Q LAE
Sbjct: 1134 -----GVGMEGTQLK--ITINVQNKPLKEWLYQVKSLAE 1165
>gi|402829459|ref|ZP_10878335.1| transcription-repair coupling factor [Slackia sp. CM382]
gi|402284440|gb|EJU32943.1| transcription-repair coupling factor [Slackia sp. CM382]
Length = 1150
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 246/613 (40%), Positives = 372/613 (60%), Gaps = 18/613 (2%)
Query: 152 YSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI-EYVFIEYADG-MAKLPVKQASRMLY 209
+ GDYVVH G+ F G+ V++D + +Y+ +EYA+ +PV+Q R +
Sbjct: 483 FPFNPGDYVVHAAHGVAFFRGL---VRQDVGGTMRDYLQLEYAENDKLFVPVEQLDR-IT 538
Query: 210 RYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKN 268
RY P E PR L++L +T+ W R +K + + +++ DL+++Y R Y P N
Sbjct: 539 RYVGP-EGSSPR-LTRL-NTSDWSRAMSKARASTKQLAFDLVDVYTRRSSVPGFRYSPDN 595
Query: 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328
P E FPY TPDQ A +V+ D+ + PMDRL+CGDVGFGKTEVALRA F V
Sbjct: 596 PWQKEMEDAFPYAETPDQLSAIAEVKADM-QSSRPMDRLVCGDVGFGKTEVALRAAFKAV 654
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 388
GKQ MVL PT +LA+QH+ +RF + + V +LSRF++ AE++E L G ++
Sbjct: 655 QDGKQVMVLCPTTILAQQHYATFKDRFEPF-HVSVEVLSRFRTPAEQKETLAGFADGTVD 713
Query: 389 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 448
++VGTH LL V +LGL+++DEEQRFGV KE++ + + +DVLTLSATPIPRTL +
Sbjct: 714 VLVGTHRLLSRDVNPRDLGLVIIDEEQRFGVGHKEQLKNLREHIDVLTLSATPIPRTLQM 773
Query: 449 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 508
+L+G RD SLI TPP ER P++ H+ + + V AI+ E+ RGGQV+YV R++ +E+
Sbjct: 774 SLSGVRDTSLILTPPDERRPVEVHVGEWDPDIVSDAIRREMQRGGQVYYVSNRVRTIEDA 833
Query: 509 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 568
+D ++ A P I AHG+ +LE ME FA GAI +L+ T I+ESG+D + NT+++
Sbjct: 834 LDRVRDAAPEARIGAAHGKMGKEELEAVMEDFAAGAIDVLVATTIIESGIDNPHTNTLVI 893
Query: 569 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 628
+D Q+ GLAQ+YQL+GRVGR+ +A+AY +P + L+++A RL A++E RELG G Q+
Sbjct: 894 EDSQRLGLAQMYQLKGRVGRSSLQAYAYFMFPSEVPLTEEATARLQAIDEHRELGSGMQV 953
Query: 629 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDINI 688
A +D+ IRG G++ G +Q+G V VG DLF +ML + + E + DI +
Sbjct: 954 AMRDLEIRGAGSLLGAEQSGSVSAVGFDLFAQMLATAFNDAREGRPLDDRAPQALSDITL 1013
Query: 689 NPRLP-SEYI--NHLENPMEMVNEAEKAAEQDI-WCLMQFTESLRRQYGKEPYSMEILLK 744
N +P S +I +++ + E V +AA D + ++ +G+ P L+
Sbjct: 1014 N--VPGSAFISEDYVPDTDERVLLYRRAAFADTPGAVDDLAAAIVEAHGEMPEECLALIT 1071
Query: 745 KLYVRRMAADIGI 757
+ +R + G+
Sbjct: 1072 RARIRAWCGEHGV 1084
>gi|315499869|ref|YP_004088672.1| transcription-repair coupling factor [Asticcacaulis excentricus CB
48]
gi|315417881|gb|ADU14521.1| transcription-repair coupling factor [Asticcacaulis excentricus CB
48]
Length = 1168
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/623 (40%), Positives = 372/623 (59%), Gaps = 24/623 (3%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQA 204
++ + SL GD VVH + GIG++ G+K D+ P + ++YA D LPV+
Sbjct: 490 NFLAEASSLSQGDLVVHIEHGIGRYEGLKTLSVNDA--PHACLELQYAADAKLYLPVENI 547
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRP 263
+L RY ++T + L +L + +W+ RK K K +++M L++L R LK +
Sbjct: 548 D-LLTRYGADSDTTQ---LDRLG-SASWQARKAKAKEKLREMADGLIQLAAARALKVGQQ 602
Query: 264 PYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
P + EF AQFPYE T DQ A DV DL+ + PMDRLICGDVGFGKTEVALRA
Sbjct: 603 IDPPSGLYDEFCAQFPYEETEDQLNAIHDVLDDLS-KGHPMDRLICGDVGFGKTEVALRA 661
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V +G+Q ++ PT +LA+QHF S+RF +P I+V LSR ++ E +E D +K
Sbjct: 662 AFVVAMSGQQVAIICPTTLLARQHFKTFSQRFQGWP-IRVRHLSRMVTRKEADETRDGLK 720
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G + +++GTH+LL +V + +LGL++VDEEQ FGVK KEK+ +F+ V +LTLSATPIP
Sbjct: 721 SGEVEVVIGTHALLSEQVGFKDLGLVIVDEEQHFGVKHKEKLKAFRADVHMLTLSATPIP 780
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL +AL+G R+ S+I+TPP +RL ++T++ F + A+ E RGGQ +YV+PR+K
Sbjct: 781 RTLQMALSGIREMSIIATPPVDRLAVRTYVLPFDAVSIREALLREKYRGGQAYYVVPRLK 840
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
L + FL++ P V + HGQ QLEE M F G +L+ T IVESGLD+ A
Sbjct: 841 DLPDLERFLREQVPEVKFIVGHGQMTPTQLEEVMTAFYDGQYDVLLATTIVESGLDVPTA 900
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV FGLAQLYQ+RGRVGR+ A AYL +LS+ + +RL L+ LG
Sbjct: 901 NTLIVHRADMFGLAQLYQIRGRVGRSKTRAFAYLTTQPHQILSEASEKRLKVLQSLDNLG 960
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEHCVISVPY 679
GFQLA D+ IRG G + G +Q+G + +GV+L+ +ML +++ S+ DE + +
Sbjct: 961 AGFQLASHDLDIRGGGNLLGNEQSGHIREIGVELYQQMLEDAVNELRSRADEPATDNRGW 1020
Query: 680 KSVQIDININPRLPSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEP 736
S QI+ +P +YI L + + V+EAEK +++ L ++G P
Sbjct: 1021 -SPQINAGAAVMIPEDYIPDLNIRLSLYRRVSEAEKREDRE-----ALAAELIDRFGPIP 1074
Query: 737 YSMEILLKKLYVRRMAADIGITK 759
E LLK + ++ + + + K
Sbjct: 1075 EEAEQLLKVVGIKGLCREANVAK 1097
>gi|417762560|ref|ZP_12410549.1| transcription-repair coupling factor [Leptospira interrogans str.
2002000624]
gi|417775093|ref|ZP_12422953.1| transcription-repair coupling factor [Leptospira interrogans str.
2002000621]
gi|418671528|ref|ZP_13232879.1| transcription-repair coupling factor [Leptospira interrogans str.
2002000623]
gi|409941553|gb|EKN87181.1| transcription-repair coupling factor [Leptospira interrogans str.
2002000624]
gi|410575190|gb|EKQ38212.1| transcription-repair coupling factor [Leptospira interrogans str.
2002000621]
gi|410581487|gb|EKQ49297.1| transcription-repair coupling factor [Leptospira interrogans str.
2002000623]
Length = 1186
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/623 (39%), Positives = 391/623 (62%), Gaps = 21/623 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRMLYRYN 212
L+ GDYVVH G+GKF +K + +++ +EY+ G + +P+ Q S ++ RY
Sbjct: 520 LKEGDYVVHIHHGVGKF--LKIERTSAGGKERDFLKLEYSGGDSLFVPLDQIS-LVQRYI 576
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E+ R +L K + W++ K + + A++ + DL+++Y +RLK + +P +
Sbjct: 577 GGTESPRLDSLGK----STWKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQ 632
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG
Sbjct: 633 EEFEAEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAG 691
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
+Q M+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++V
Sbjct: 692 RQIMMLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVV 750
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH++L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALT
Sbjct: 751 GTHAILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALT 810
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G R+ S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++
Sbjct: 811 GIRELSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNY 870
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L + P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+
Sbjct: 871 LSKLVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRA 930
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +
Sbjct: 931 DLFGLSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMR 990
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININP 690
D+ IRG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N
Sbjct: 991 DLEIRGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNF 1047
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYV 748
+P YI+ +E + E A +D+ + + + ++G+ P + ILL+K +
Sbjct: 1048 FIPETYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--I 1103
Query: 749 RRMAADIGITKIYASGKMVGMKT 771
R +A+++G + + MK+
Sbjct: 1104 RTLASNLGFEFVTEMKDEIKMKS 1126
>gi|47569902|ref|ZP_00240569.1| transcription-repair coupling factor [Bacillus cereus G9241]
gi|228983309|ref|ZP_04143523.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229194444|ref|ZP_04321248.1| Transcription-repair-coupling factor [Bacillus cereus m1293]
gi|423572804|ref|ZP_17548923.1| transcription-repair coupling factor [Bacillus cereus MSX-D12]
gi|423608122|ref|ZP_17584014.1| transcription-repair coupling factor [Bacillus cereus VD102]
gi|47553436|gb|EAL11820.1| transcription-repair coupling factor [Bacillus cereus G9241]
gi|228589034|gb|EEK47048.1| Transcription-repair-coupling factor [Bacillus cereus m1293]
gi|228776423|gb|EEM24775.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|401216728|gb|EJR23434.1| transcription-repair coupling factor [Bacillus cereus MSX-D12]
gi|401238619|gb|EJR45055.1| transcription-repair coupling factor [Bacillus cereus VD102]
Length = 1176
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|315640551|ref|ZP_07895659.1| transcription-repair coupling factor [Enterococcus italicus DSM
15952]
gi|315483755|gb|EFU74243.1| transcription-repair coupling factor [Enterococcus italicus DSM
15952]
Length = 1179
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/555 (41%), Positives = 360/555 (64%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH+ GIGK++G++ ++ D V +Y+ I Y D +PV Q + M+ +Y
Sbjct: 496 LKTGDYVVHENHGIGKYIGME-TLEVDG-VHQDYLTIIYQNDDKLFIPVTQLN-MIQKY- 551
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 552 VASELKSPR-INKLGGS-EWTKTKRKVSGKIEDIADDLIQLYAQREAEKGFAFGPDDGYQ 609
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ ++++D+ E+E PMDRL+ GDVGFGKTEVALRA F +
Sbjct: 610 KEFEDAFPYSETEDQLRSTSEIKKDM-EKEKPMDRLLVGDVGFGKTEVALRAAFKAIRES 668
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT +LA+QH++ + +RF +P + +G+LSRF++K++++E ++ ++ G ++I+V
Sbjct: 669 KQVAILVPTTILAQQHYETMVDRFQGFP-VNIGILSRFRTKSQQQETIEQLRRGQIDIVV 727
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL + + +LGLLV+DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 728 GTHRLLSKDITFADLGLLVIDEEQRFGVKHKERLKELRSQVDVLTLTATPIPRTLHMSML 787
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R+ +E ++
Sbjct: 788 GVRDLSVIETPPENRYPIQTYVMESNPGAIREAILREMARGGQVFYLYNRVDTIERKVEE 847
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQ P I AHGQ QLE T+ F +G IL+ T I+E+G+DI NANT+ V++
Sbjct: 848 LQMLVPDARIGYAHGQMTEIQLENTLFDFIEGEYDILVTTTIIETGVDIPNANTLFVENA 907
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+++ A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 908 DYMGLSTLYQLRGRVGRSNRVAYAYFMYEPQKILTEVSEKRLQAIKDFTELGSGFKIAMR 967
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + +VG D++ +ML E++ + + + +V+ID+ I+
Sbjct: 968 DLSIRGAGNLLGAQQHGFIDSVGFDMYAQMLQEAVER-KQGKNTQLQKTNVEIDLGIDAY 1026
Query: 692 LPSEYINHLENPMEM 706
LP+ YI +E+
Sbjct: 1027 LPASYIEDERQKIEI 1041
>gi|421108287|ref|ZP_15568827.1| transcription-repair coupling factor [Leptospira kirschneri str. H2]
gi|410006553|gb|EKO60304.1| transcription-repair coupling factor [Leptospira kirschneri str. H2]
Length = 1186
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 249/623 (39%), Positives = 389/623 (62%), Gaps = 21/623 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRMLYRYN 212
L+ GDYVVH G+GKFV K + +++ +EY+ G + +P+ Q S ++ RY
Sbjct: 520 LKEGDYVVHIHHGVGKFV--KIERTSAGGKERDFLKLEYSGGDSLFVPLDQIS-LVQRYI 576
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E+ R +L K +AW++ K + + A++ + DL+++Y +RLK + +P +
Sbjct: 577 GGTESPRLDSLGK----SAWKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQ 632
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG
Sbjct: 633 EEFEAEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAG 691
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
+Q M+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++V
Sbjct: 692 RQIMMLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVV 750
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH++L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALT
Sbjct: 751 GTHAILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALT 810
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G R+ S+I+TPP R ++T++ + + AI+ E+ R GQVFY+ R++ +EE +
Sbjct: 811 GIRELSIIATPPKNRQSVETYVLEEEDDLIADAIRNEIQRDGQVFYLYNRVETIEEETSY 870
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L + P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+
Sbjct: 871 LSKLVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRA 930
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +
Sbjct: 931 DLFGLSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMR 990
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININP 690
D+ IRG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N
Sbjct: 991 DLEIRGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNF 1047
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYV 748
+P YI+ +E + E A +D+ + + + ++G+ P + ILL+K +
Sbjct: 1048 FIPETYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--I 1103
Query: 749 RRMAADIGITKIYASGKMVGMKT 771
R +A+ +G + + MK+
Sbjct: 1104 RTLASSLGFESVTEMKDEIKMKS 1126
>gi|408355421|ref|YP_006843952.1| transcription-repair coupling factor [Amphibacillus xylanus NBRC
15112]
gi|407726192|dbj|BAM46190.1| transcription-repair coupling factor [Amphibacillus xylanus NBRC
15112]
Length = 1174
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/610 (40%), Positives = 375/610 (61%), Gaps = 36/610 (5%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRML 208
L+ GD+VVH G+G+FVGI+ VQKD ++ I+Y D +P+ Q ++
Sbjct: 501 LKEGDFVVHVNHGVGRFVGIETLTVQGVQKD------FMLIKYRGDDRLFVPIDQID-LV 553
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
+Y + +E K P+ L KL T W++ K+K K ++ + +L++LY R K + ++
Sbjct: 554 QKY-VGSEAKEPK-LYKLG-GTEWKKVKSKVKSKVEDIADELIKLYAEREATKGYAFSED 610
Query: 269 PAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
+ EF FPYE T DQ ++ ++++D+ +R PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 611 TLLQREFEDAFPYEETEDQLRSIEEIKQDM-QRARPMDRLLCGDVGYGKTEVAIRAAFKA 669
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
+ GKQ L PT +LA+QHF+ + ERF YP I+V LLSRF+++ E+++ L +K G +
Sbjct: 670 IMDGKQVAFLVPTTILAQQHFETIIERFHDYP-IEVRLLSRFRTQKEQKDALKGLKEGVV 728
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+++VGTH LL VVY +LGLL+VDEEQRFGVK KE+I K +VDVLTL+ATPIPRTL+
Sbjct: 729 DLVVGTHRLLSKDVVYKDLGLLIVDEEQRFGVKHKERIKQIKTNVDVLTLTATPIPRTLH 788
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+++ G RD S+I TPP R PI+T++ ++ + AI+ EL RGGQVF++ R++ +E+
Sbjct: 789 MSMLGVRDLSVIETPPANRFPIQTYVMEYNPVFIREAIERELGRGGQVFFLYNRVENIEQ 848
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
++ G +A+AHGQ +LE M F +G +L+ T I+E+G+DI N NT+I
Sbjct: 849 KAQEIENLVEGARVAVAHGQMNETELENIMLAFLEGEYDVLVSTTIIETGVDIPNVNTLI 908
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
V + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG GF+
Sbjct: 909 VDQADRMGLSQLYQLRGRVGRSNRIAYAYFTYQKNKVLSEVAEQRLQAIKEFTELGSGFK 968
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDIN 687
+A +D+ IRG G I G +Q G + +VG DL+ +ML ES+ K K Q++ +
Sbjct: 969 IAMRDLSIRGAGNILGAEQHGFIDSVGFDLYSDMLAESIEK--------RKLKQDQVEES 1020
Query: 688 INPRL--------PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
I P L P YI+ + + M + Q+ + + L ++G P +
Sbjct: 1021 IEPELSLAIEAFIPDHYISDSKQKIAMYKRFQAVDSQE--GIDDIIDELTDRFGDYPKEV 1078
Query: 740 EILLKKLYVR 749
E LL +R
Sbjct: 1079 ENLLTVCQIR 1088
>gi|375148838|ref|YP_005011279.1| transcription-repair coupling factor [Niastella koreensis GR20-10]
gi|361062884|gb|AEW01876.1| transcription-repair coupling factor [Niastella koreensis GR20-10]
Length = 1146
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 260/656 (39%), Positives = 376/656 (57%), Gaps = 29/656 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNL 213
L+ GDYV H G+G + G++ ++ + + E V I Y D + + +Y
Sbjct: 459 LQPGDYVTHIDHGVGIYSGLQ-KLESNGKMQ-EAVRIIYRDSDILYVNINSLHKISKYT- 515
Query: 214 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIA 272
E P+ SD AW R K K K ++++ DL+ LY R Q+ + P N
Sbjct: 516 GKEGSVPKVNKLGSD--AWNRLKEKTKTKVKEIAFDLITLYAQRKAQQGFQHAPDNYMQT 573
Query: 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 332
E A F YE TPDQ KA DV++D+ E +PMDRL+CGDVGFGKTE+A+RA F GK
Sbjct: 574 ELEASFIYEDTPDQSKATADVKKDM-ESPSPMDRLVCGDVGFGKTEIAIRAAFKSCCDGK 632
Query: 333 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392
QA VL PT +LA QHF SER +P + V ++RF+S EK++ L ++ G ++II+G
Sbjct: 633 QAAVLVPTTILAFQHFKTFSERLKDFP-VTVDYVNRFKSAKEKKDTLKRLEEGKIDIIIG 691
Query: 393 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTG 452
TH+LLG V Y +LGLLVVDEEQ+FGV KEKI + + +VD LTL+ATPIPRTL +L G
Sbjct: 692 THALLGKEVKYKDLGLLVVDEEQKFGVAHKEKIKTLRTNVDCLTLTATPIPRTLQFSLMG 751
Query: 453 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 512
RD S+++TPPP R PI+T + F+ + + AI YE +RGGQVF++ R++GL E +
Sbjct: 752 ARDLSIMNTPPPNRQPIQTEVQVFNHDFIRDAIYYETERGGQVFFIHNRVQGLSEMAALI 811
Query: 513 QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 572
Q P + I AHGQ LEE + F +LICTNIVESG+DI N NTII+ +
Sbjct: 812 QGLCPDLSIGFAHGQLEGHILEERILDFIDKKYDVLICTNIVESGVDIPNVNTIIINNAH 871
Query: 573 QFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKD 632
FGL+ L+QLRGRVGR++K+A YL P S L + +RL LE+ ELG GFQ+A +D
Sbjct: 872 HFGLSDLHQLRGRVGRSNKKAFCYLLAPPMSTLPPDSRKRLQTLEQHSELGSGFQIAMRD 931
Query: 633 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDE-------HCVISVPYKSVQ-- 683
+ IRG G + G +Q+G + +G +++ ++L E++ ++ IS VQ
Sbjct: 932 LDIRGAGNLLGGEQSGFMAEIGFEMYQKVLEEAIKELKRTQFRELFKAEISKQEDYVQDC 991
Query: 684 -IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
ID ++ +P Y+ + + + + ++ L F L+ ++G P +E L
Sbjct: 992 TIDTDLEILIPDSYVESITERLTLYTRLDNCDNEE--ELQAFAVELQDRFGPIPQQVEDL 1049
Query: 743 LKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDS--MTSEVHRNSLTF 796
+ VRR+A ++G K+ +K + K F DS S++ N LTF
Sbjct: 1050 FDTVRVRRLAVELGFEKML-------LKDDTLKCYFINKADSPYFESDIFHNILTF 1098
>gi|260060951|ref|YP_003194031.1| transcription-repair coupling factor [Robiginitalea biformata
HTCC2501]
gi|88785083|gb|EAR16252.1| transcription-repair coupling factor [Robiginitalea biformata
HTCC2501]
Length = 1121
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 368/628 (58%), Gaps = 23/628 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYV H GIGKF G+ K DV+ I+ + Y D + + +YN
Sbjct: 433 LEIGDYVTHIDHGIGKFGGLQKIDVEGRQQEAIKLI---YGDRDILYVSIHSLHKIAKYN 489
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYL-HRLKQKRPPYPKNPAI 271
+ T P+ + KL + AW++ K K K ++K+ DL+++Y R+K+ P +
Sbjct: 490 GKDGTV-PK-IYKLG-SAAWKKLKAKTKSRVKKIAFDLIQVYAKRRMKKGFSHAPDSYLQ 546
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E A F YE TPDQ A V+ D+ E E PMDRLICGDVGFGKTEVA+RA F V G
Sbjct: 547 HELEASFVYEDTPDQSTATEAVKADM-ESERPMDRLICGDVGFGKTEVAIRAAFKAVDNG 605
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT +LA QHF ER ++ P + V L+RF+S E+ L+ +K G L+I++
Sbjct: 606 KQVAVLVPTTILAFQHFRTFGERLAEMP-VTVDYLNRFRSAKERRTLLENLKSGKLDIVI 664
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH L+G +V + +LGLL+VDEEQ+FGV K+K+ S K +DVLTL+ATPIPRTL +L
Sbjct: 665 GTHQLVGKQVEFKDLGLLIVDEEQKFGVSVKDKLKSLKEHIDVLTLTATPIPRTLQFSLM 724
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD S+I+TPPP R PI++ + F +E + AI+YE+ RGGQVF+V RI+ + E
Sbjct: 725 AARDLSVINTPPPNRYPIESRVVRFGEEVIRDAIRYEIQRGGQVFFVHNRIENIAEVAGL 784
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P + I HGQ ++LE+ M F G +L+ T I+ESGLD+ NANTI++ +
Sbjct: 785 IQRLVPDARVGIGHGQMEGKKLEKLMLDFMNGEFDVLVSTTIIESGLDVTNANTILINNA 844
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+ L+Q+RGRVGR++K+A Y P +++ +A +R+ ALE+ ELG GF +A K
Sbjct: 845 NNFGLSDLHQMRGRVGRSNKKAFCYFITPPYHVMTAEARKRMEALEQYTELGSGFNIAMK 904
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV----------PYKS 681
D+ IRG G + G +Q+G + +G + + ++L E++ ++ ++ + +
Sbjct: 905 DLEIRGAGDLLGGEQSGFINEIGFETYQKILAEAIDELKDNEFKDLYRETEGPRQQYVRD 964
Query: 682 VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
QID + P +YIN + + + E ++ L F L ++G P
Sbjct: 965 CQIDTDFELLFPDDYINSVSERLSLYTELNDTDNEE--DLAAFRRKLEDRFGPLPEPASD 1022
Query: 742 LLKKLYVRRMAADIGITKI-YASGKMVG 768
LL+ + ++ MA +G+ KI GK++G
Sbjct: 1023 LLESVRLKWMATALGLEKIVMKKGKLIG 1050
>gi|339449333|ref|ZP_08652889.1| transcription-repair coupling factor [Lactobacillus fructivorans KCTC
3543]
Length = 1179
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 260/696 (37%), Positives = 413/696 (59%), Gaps = 41/696 (5%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIE-----YVFIEYADGMAKL--PVKQASR 206
L+ GDYVVH GIG++ G+K T+ ++ Y+ + Y G AK+ PV Q +
Sbjct: 497 LKPGDYVVHVNHGIGRYDGMK-------TMEVDGRHQDYMTLTYQKG-AKIYVPVDQLN- 547
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP 266
++ +Y + +E K P+ ++KL T W + K ++ + DL++LY R + +P
Sbjct: 548 LVQKY-VSSEDKHPK-INKLG-GTEWAKTKRSVASKVEDIADDLVDLYAKREAESGYAFP 604
Query: 267 KNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
+ EF FPY TPDQ ++ ++++D+ E PMDRL+ GDVG+GKTEVALRA F
Sbjct: 605 VDDQYQTEFEQAFPYTETPDQIRSTDEIKKDM-ESPHPMDRLLVGDVGYGKTEVALRAAF 663
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
V AGKQ L PT VLA+QH++ + ERF +P +KVG+LSRF + + + + +K G
Sbjct: 664 KAVEAGKQVAFLVPTTVLAQQHYETMIERFDGFP-VKVGVLSRFDTPKQTRQTIQDLKDG 722
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++I+VGTH LL V +N+LGLL+VDEEQRFGVK KEKI + +VDVLTL+ATPIPRT
Sbjct: 723 KIDIVVGTHRLLSKDVKFNDLGLLIVDEEQRFGVKHKEKIKELRSNVDVLTLTATPIPRT 782
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L +++ G RD S+I TPP R PI+T++ ++ ++ I+ E+ RGGQVFY+ R+K +
Sbjct: 783 LNMSMMGVRDLSVIETPPANRYPIQTYVMEQNEGSIVDGIRREMQRGGQVFYLHNRVKDI 842
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
++ +D LQ P IA +GQ ++E + F G +L+ T I+E+G+DI NANT
Sbjct: 843 DQTVDKLQTLLPDARIASINGQMSENEMEGILYDFVNGDYDVLVTTTIIETGVDIPNANT 902
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
+ V+D + GL+QLYQ+RGR+GR+++ AY Y +L++ + RL A+++ ELG G
Sbjct: 903 LFVEDADRMGLSQLYQIRGRIGRSNRVGQAYFMYQPNKVLTEVSENRLEAIKDFTELGSG 962
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQI 684
F++A +D+ IRG G + G+QQ G + +VG D++ +ML +++SK +H V V ++
Sbjct: 963 FKVAMRDLSIRGAGNVLGKQQHGFINSVGYDMYTKMLSDAVSKKKGQHRV--VEKSDSKV 1020
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTE---SLRRQYGKEPYSMEI 741
++ I LPS YI + +E+ + +D QFTE L ++G+ P +
Sbjct: 1021 ELGIEAYLPSTYIEDQQQKIELYKRIRQMDSED-----QFTELQSDLIDRFGEYPVEVAN 1075
Query: 742 LLKKLYVRRMAADIGITKIYA--SGKMVGM-KTNMNKKVFKMMIDSMTSEVHRNSLTFEG 798
LL+ ++ +A I KI S MV + KT K K ++ ++ R+++
Sbjct: 1076 LLEIDRIKMLADYDLIEKIRKDQSNLMVTVSKTGTQKFTSKDILKAIADTDFRSAVKVVD 1135
Query: 799 DQIKAELLLELPREQLLNWIFQCLAELYASLPALIK 834
+ + +L+++ P + +W L++LY + L K
Sbjct: 1136 GRYQIKLVVQ-PTMKDKDW----LSQLYKFVSGLSK 1166
>gi|303234885|ref|ZP_07321510.1| transcription-repair coupling factor [Finegoldia magna BVS033A4]
gi|302494003|gb|EFL53784.1| transcription-repair coupling factor [Finegoldia magna BVS033A4]
Length = 1168
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 238/616 (38%), Positives = 385/616 (62%), Gaps = 16/616 (2%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASR 206
V+ L DYVVH+ GIG++ GI K DV + + +Y+ I+Y A+ +P Q +
Sbjct: 497 VNYSDLNIDDYVVHENHGIGQYKGIEKIDV---NGIQKDYIVIQYKANDRLMIPTDQMN- 552
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP 266
++ +Y K+P +L+KLS W + K K K ++ +M DL+ELY R K K +
Sbjct: 553 LVQKYIGGGNVKKP-SLNKLS-GNDWAKAKQKAKKSVDEMADDLVELYSKRAKLKGYQFS 610
Query: 267 KNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
++ EF FPYE T Q ++ +++ D+ E + PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 611 QDTEWQREFEDSFPYEETDSQVRSIEEIKADM-ESDRPMDRLLCGDVGYGKTEVAIRACF 669
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
+ GKQ L PT +LA+QHF+ + ERF YP I+V ++SRF S A +++ + ++ G
Sbjct: 670 KAIMDGKQVAFLVPTTILAQQHFNTIKERFRDYP-IRVEMMSRFVSPARQKQIMKDVQRG 728
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++++VGTH +L + + +LGLLV+DEEQRFGV+ KEK+ S + +VDVLTLSATPIPRT
Sbjct: 729 LVDLLVGTHRILSKNLKFKDLGLLVIDEEQRFGVRHKEKLKSMRENVDVLTLSATPIPRT 788
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L + LTG RD SL+ PP +R PI T+++ ++ + AI ELDRGGQ+++V RI+ +
Sbjct: 789 LQMGLTGIRDMSLLEEPPEDRTPISTYVTEYNPSLIRDAIIRELDRGGQIYFVYNRIEDI 848
Query: 506 EEPMDF-LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
++ M+F L++ P ++IAIAHG+ ++LE M F G +L+CT I+E+GLDIQN N
Sbjct: 849 DQ-MEFKLKELVPELNIAIAHGRMNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVN 907
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+I+ + + GL+QLYQL+GR+GR+D+ + AY Y + L++ + +RL A+++ E G
Sbjct: 908 TMIIYNADKMGLSQLYQLKGRIGRSDRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFGS 967
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ +RG G + GE Q G + +G DL+ ++L +++ + IS +V I
Sbjct: 968 GFKIAMRDLELRGAGNLLGESQHGHIAKIGYDLYVKLLEQAVREAKGET-ISENKNTVMI 1026
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
+I +N +P +YI+ E +++ + ++D + + + L ++G P + ++
Sbjct: 1027 EIKVNGYIPEDYISENETKIDIYKKIASIQDEDDYS--EIIDELIDRFGDVPKPIVNIMD 1084
Query: 745 KLYVRRMAADIGITKI 760
++ A + I I
Sbjct: 1085 VSIIKAFCARLSIESI 1100
>gi|295093547|emb|CBK82638.1| transcription-repair coupling factor [Coprococcus sp. ART55/1]
Length = 1188
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/606 (39%), Positives = 369/606 (60%), Gaps = 12/606 (1%)
Query: 157 GDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNE 216
GDYVVH+K GIG + G++ ++ D + +Y+ IEYA+G + + + +Y E
Sbjct: 511 GDYVVHEKYGIGIYRGLE-KIEVDGALK-DYLVIEYAEGGKLYVLASETDRIQKYR-SKE 567
Query: 217 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFA 275
++ P+ +++L + W++ + K K + ++ L++LY R ++ Y P + EF
Sbjct: 568 SRAPK-INRLG-GSEWQKVRNKVKGHVSEVAQHLVKLYSERQAREGFAYSPDSEWQKEFE 625
Query: 276 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 335
FPY T DQ KA DV+ D+ E MDRL+CGDVGFGKTEVA+RA F V KQ
Sbjct: 626 ETFPYTETDDQLKAIEDVKADM-ESHKIMDRLVCGDVGFGKTEVAIRAAFKAVGDSKQVA 684
Query: 336 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 395
L PT +LA+QH++ +ER YP + V LL RF ++ E + L +K G ++I++GTH
Sbjct: 685 YLVPTTILAEQHYETFTERMKDYP-VTVRLLCRFCTQKEIKSTLRELKEGKVDIVIGTHR 743
Query: 396 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 455
LL V + NLGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL+++L G RD
Sbjct: 744 LLSKDVEFKNLGLLIIDEEQRFGVNHKEKIKEMKTNVDVLTLTATPIPRTLHMSLVGIRD 803
Query: 456 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 515
SL+ PP +R PI+T++ + +E AI EL R GQV+YV R++G+E D ++
Sbjct: 804 MSLLEEPPVDRRPIQTYVMEYDRELAREAIARELARHGQVYYVYNRVEGIERFADDVRSL 863
Query: 516 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 575
P ++ AHGQ R LE+ M +F + I +L+CT I+E+GLDI NANTII+ D FG
Sbjct: 864 VPYANVEFAHGQMDGRTLEDIMYRFNKKEIDVLVCTTIIETGLDIPNANTIIIHDANLFG 923
Query: 576 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 635
LAQLYQLRGRVGR+D+ A A++FY ++S+ A +RL A++E +LG G ++++ D+ I
Sbjct: 924 LAQLYQLRGRVGRSDRSAFAFMFYRRNKMISEVAEKRLRAIKEYTDLGSGVKVSKADLNI 983
Query: 636 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSE 695
RG G++ GE Q+G+ VG DL+ +ML +++ ++ V Y++ +ID+ ++ +P
Sbjct: 984 RGAGSVLGESQSGNYEVVGYDLYCKMLNDAVRELRGEKVFQ-EYET-EIDLPVDSFIPET 1041
Query: 696 YINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADI 755
Y+ + +E+ +D + + L ++G P LL +R A
Sbjct: 1042 YVKNDFVKLELCKRISLIKNEDEYN--DIVDELIDRFGDIPDETMNLLDVALLRANANIC 1099
Query: 756 GITKIY 761
IT+I+
Sbjct: 1100 FITRIW 1105
>gi|423410721|ref|ZP_17387841.1| transcription-repair coupling factor [Bacillus cereus BAG3O-2]
gi|423433495|ref|ZP_17410499.1| transcription-repair coupling factor [Bacillus cereus BAG4O-1]
gi|401109952|gb|EJQ17869.1| transcription-repair coupling factor [Bacillus cereus BAG3O-2]
gi|401111558|gb|EJQ19447.1| transcription-repair coupling factor [Bacillus cereus BAG4O-1]
Length = 1176
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENIV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|300870408|ref|YP_003785279.1| transcription-repair coupling factor [Brachyspira pilosicoli 95/1000]
gi|300688107|gb|ADK30778.1| transcription-repair coupling factor [Brachyspira pilosicoli 95/1000]
Length = 1196
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/595 (40%), Positives = 370/595 (62%), Gaps = 26/595 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGI--KFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYR 210
L GDY VH GIGK++G+ K K+ +Y+ +EYA G +PV+Q + + +
Sbjct: 490 LNIGDYAVHVNYGIGKYLGLTRKLSNGKEK----DYLTLEYAKGDKLYIPVEQMN-FVQK 544
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNP 269
Y + + P+ L+ L +AW++ K+K + DL+++Y R Y P
Sbjct: 545 Y-ISGSGEEPK-LTALG-GSAWDKIKSKAREDALATARDLIKIYAIRSNVHGNIYGPDTQ 601
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
+F A F YE T DQ +A D++ D+ E + MDRL+CGDVGFGKTEVA RAIF V
Sbjct: 602 WQDDFEASFNYEETVDQLRAINDIKSDM-ESDKMMDRLVCGDVGFGKTEVAFRAIFKAVM 660
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
AGKQ +L PT +L++QH++ +RF +P +++ +L+RF S + +++ +M+ +G +I
Sbjct: 661 AGKQCAILCPTTILSQQHYNNAKKRFEDFP-VRIEVLNRFISSRQAKKNKEMLANGSCDI 719
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
I+GTH LL + + NLGL+V+DEEQRFGVK KE + + DVLTLSATPIPRTL +A
Sbjct: 720 IIGTHMLLSDDIKFKNLGLIVIDEEQRFGVKHKEALKKLRFETDVLTLSATPIPRTLNMA 779
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
LTG RD S+I TPP R+P+KT++ F+++ V++AI+ EL R GQVFY+ RI +E
Sbjct: 780 LTGIRDISIIETPPLNRIPVKTYVMEFNEKTVVNAIERELKRNGQVFYLYNRIDTIESFA 839
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+++ P I +AHG+ QLE+ M F IL+ T I+E+G+DI NANTI++
Sbjct: 840 LMIKKLCPKASICVAHGRMTGIQLEKIMSDFINHKYDILVSTTIIENGIDIPNANTILID 899
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
+ GL++LYQLRGRVGR+D+EA+AY+FYP+ L++ A +RL A+ E +LG GF++A
Sbjct: 900 SANKLGLSELYQLRGRVGRSDREAYAYMFYPENLALTEVAYKRLQAISEHTDLGAGFKIA 959
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G I G++Q+G + VG +L+ +ML E+ ++ + V + +V ID N
Sbjct: 960 MRDLEIRGAGNILGKEQSGMIYQVGYELYTQMLEEATNEYKGE-IKEVTFDTV-IDFKHN 1017
Query: 690 PRLPSEYINHLENPMEMVNEAE----KAAEQDIWCLMQFTESLRRQYGKEPYSME 740
+P EYI+ +P E ++ + +++DI ++ + +YGK P ME
Sbjct: 1018 LFIPDEYIS---DPKEKISVYKLIMRSQSDEDIDTAKEY---MIDKYGKMPKEME 1066
>gi|430851335|ref|ZP_19469085.1| transcription-repair coupling factor [Enterococcus faecium E1185]
gi|430534297|gb|ELA74758.1| transcription-repair coupling factor [Enterococcus faecium E1185]
Length = 1173
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 226/559 (40%), Positives = 359/559 (64%), Gaps = 19/559 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRML 208
L++GDYVVH GIGK++G++ DV +D Y+ I Y D +PV Q + ++
Sbjct: 498 LKAGDYVVHANHGIGKYIGMETLEVDDVHQD------YMTILYQNDDKLFIPVTQLN-LI 550
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PK 267
+Y + +E K PR ++KL + W + K K I+ + DL++LY R +K + P
Sbjct: 551 QKY-VASEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPD 607
Query: 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
+ EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F
Sbjct: 608 DAYQKEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKA 666
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
+ KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G +
Sbjct: 667 IKESKQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQV 725
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I+VGTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL+
Sbjct: 726 DIVVGTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLH 785
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+++ G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+
Sbjct: 786 MSMLGVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQ 845
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
++ +Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+
Sbjct: 846 KVEEIQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLF 905
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
V++ GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF+
Sbjct: 906 VENADYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFK 965
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDIN 687
+A +D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+
Sbjct: 966 IAMRDLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLG 1024
Query: 688 INPRLPSEYINHLENPMEM 706
++ LP Y+ +E+
Sbjct: 1025 VDAYLPETYVADQRQKIEI 1043
>gi|308271395|emb|CBX28003.1| hypothetical protein N47_G33270 [uncultured Desulfobacterium sp.]
Length = 1171
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 246/614 (40%), Positives = 366/614 (59%), Gaps = 24/614 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GD VVH GIG++ GI K V + +++ I Y D LPV + + M+++Y
Sbjct: 504 LKKGDLVVHNDHGIGQYEGIAKLTVDGSTN---DFLLILYKDDDRLYLPVDKMN-MVFKY 559
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-----LKQKRPPYP 266
+E L K+ AW+R K + K + +K+ +L++LY R K+P
Sbjct: 560 MGVDEI--VPVLDKMG-GKAWDRVKERAKKSAEKIAGELLKLYATRKVNEGFAHKKP--- 613
Query: 267 KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
+ +F A+F YE TPDQ A DV D+ E TPMDRL+CGDVG+GKTEVALRA F
Sbjct: 614 -DSYFKDFEAEFSYEETPDQLSAIDDVMSDM-ENNTPMDRLVCGDVGYGKTEVALRASFL 671
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
++ KQ VL PT VLA+QHF RF KYP + + LSRF+S E++ + I G
Sbjct: 672 AINCAKQVAVLVPTTVLAEQHFSTFKARFEKYP-VNIECLSRFRSIKEQKRIISDISSGK 730
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
+I++GTH LL V++ +LGL+V+DEE RFGVK KEK+ + +VDVL L+ATPIPRTL
Sbjct: 731 ADIVIGTHRLLQKDVIFKDLGLIVLDEEHRFGVKHKEKLKKLRNNVDVLALTATPIPRTL 790
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
+++LTG RD S+ISTPP R I T++S F + + A++ EL R GQ+++V I ++
Sbjct: 791 HMSLTGIRDISVISTPPEHRQSIITYVSEFDEALIAEAVRKELARKGQIYFVHNNIFTID 850
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
+ + L + P + I I HG+ +LE M KF I +L+CT I+ESGLDI +ANTI
Sbjct: 851 KIANKLHELIPEIKIGIGHGRLSENELESVMLKFVNKDIDMLVCTTIIESGLDIPSANTI 910
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
I+ +FGLAQ+YQLRGRVGR+D++A+AYLF P S+L A +RL L E +LG GF
Sbjct: 911 IINRADRFGLAQIYQLRGRVGRSDEQAYAYLFIPKDSILGKDAQKRLKVLMEHSDLGSGF 970
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 686
Q+A D+ IRG GTI G Q+G + +G ++F +++ E++ ++ V + +I+I
Sbjct: 971 QIAMSDLRIRGGGTILGASQSGHIAAIGYEMFLKLMEEAVCELKGEPVNKII--EPEINI 1028
Query: 687 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
+++ L Y++ ++ + + E ++ + F L ++G P LL K+
Sbjct: 1029 SMSAYLSELYVSDIDQRLTAYRRLSRMTE--LYEVSDFKAELEDRFGPLPKEASNLLVKI 1086
Query: 747 YVRRMAADIGITKI 760
R +A GI ++
Sbjct: 1087 MFRILAQKSGIQRL 1100
>gi|347536875|ref|YP_004844300.1| transcription-repair coupling factor [Flavobacterium branchiophilum
FL-15]
gi|345530033|emb|CCB70063.1| Transcription-repair coupling factor [Flavobacterium branchiophilum
FL-15]
Length = 1116
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 240/628 (38%), Positives = 366/628 (58%), Gaps = 23/628 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
+L GDYV H GIGKF G+ K V+ + I+ V YAD + + ++
Sbjct: 435 TLAVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLV---YADNDIVYVSIHSLHKISKF 491
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYL-HRLKQKRPPYPKNPA 270
N + P + KL + AW+ K K K ++ + +L++LY RL + P +
Sbjct: 492 N--GKDGSPPKIYKLG-SNAWKLLKQKTKARVKHIAFNLIQLYAKRRLDKGFQCAPDSYL 548
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
AE + F YE TPDQ K+ +++ D+ E ++PMDRL+CGDVGFGKTEVA+RA F V
Sbjct: 549 QAELESSFIYEDTPDQLKSTQEIKADM-ESDSPMDRLVCGDVGFGKTEVAIRAAFKAVDN 607
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
KQ VL PT +LA QH+ SER P + VG L+RF++ +K E L + G L+I+
Sbjct: 608 SKQVAVLVPTTILAYQHYRTFSERLKDMP-VSVGYLNRFRTAKQKAETLKQLAEGKLDIV 666
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ VV+ +LGLL+VDEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L
Sbjct: 667 IGTHQLVNKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPIPRTLQFSL 726
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S+ISTPPP R PI++ + FS+E + AI +E+ R GQV+++ RI+ ++E
Sbjct: 727 MAARDLSVISTPPPNRYPIESQVVGFSEETIRDAISFEIQRNGQVYFINNRIENIKEVAG 786
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P + I HGQ +LEE M F G +L+ T I+ESGLD+ NANTI + +
Sbjct: 787 MIQRLVPDAKVGIGHGQMDGSKLEELMLAFMNGDFDVLVATTIIESGLDVPNANTIFINN 846
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A Y P S ++D+A +R+ ALE+ ELG GF +A
Sbjct: 847 AHHFGLSDLHQMRGRVGRSNKKAFCYFICPPYSAMTDEARKRIQALEQFSELGSGFNIAM 906
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS----------VPYK 680
KD+ IRG G + G +Q+G + +G D + +++ E++ ++ E+ V K
Sbjct: 907 KDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYENEDKPEKVYVK 966
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
+ +D + P +YIN++ + + NE + +D L + + L ++G P
Sbjct: 967 DLHLDTDFELLFPDDYINNISERLNLYNEL--SLIKDDLTLENYQQKLIDRFGPLPKQAV 1024
Query: 741 ILLKKLYVRRMAADIGITK-IYASGKMV 767
LL + ++ +A +GI K + GKM+
Sbjct: 1025 SLLNSIKIKWIATQLGIEKLVMKQGKMI 1052
>gi|206972595|ref|ZP_03233538.1| transcription-repair coupling factor [Bacillus cereus AH1134]
gi|228950602|ref|ZP_04112737.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229176654|ref|ZP_04304059.1| Transcription-repair-coupling factor [Bacillus cereus 172560W]
gi|423427606|ref|ZP_17404637.1| transcription-repair coupling factor [Bacillus cereus BAG3X2-2]
gi|423438934|ref|ZP_17415915.1| transcription-repair coupling factor [Bacillus cereus BAG4X12-1]
gi|423506591|ref|ZP_17483180.1| transcription-repair coupling factor [Bacillus cereus HD73]
gi|206732497|gb|EDZ49676.1| transcription-repair coupling factor [Bacillus cereus AH1134]
gi|228606821|gb|EEK64237.1| Transcription-repair-coupling factor [Bacillus cereus 172560W]
gi|228809077|gb|EEM55561.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|401108001|gb|EJQ15937.1| transcription-repair coupling factor [Bacillus cereus BAG3X2-2]
gi|401115422|gb|EJQ23274.1| transcription-repair coupling factor [Bacillus cereus BAG4X12-1]
gi|402447416|gb|EJV79268.1| transcription-repair coupling factor [Bacillus cereus HD73]
Length = 1176
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENIV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|229027900|ref|ZP_04184055.1| Transcription-repair-coupling factor [Bacillus cereus AH1271]
gi|228733414|gb|EEL84241.1| Transcription-repair-coupling factor [Bacillus cereus AH1271]
Length = 1176
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 244/615 (39%), Positives = 384/615 (62%), Gaps = 28/615 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPY 737
+V+ID+ ++ LP YI+ + + M + +A +DI + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSAMEDIE---ELQEEMIDRFGDYPQ 1074
Query: 738 SMEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1075 EVGYLLQIANIKVLA 1089
>gi|418694946|ref|ZP_13255972.1| transcription-repair coupling factor [Leptospira kirschneri str. H1]
gi|409957105|gb|EKO16020.1| transcription-repair coupling factor [Leptospira kirschneri str. H1]
Length = 1181
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 249/623 (39%), Positives = 390/623 (62%), Gaps = 21/623 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRMLYRYN 212
L+ GDYVVH G+GKFV K + +++ +EY+ G + +P+ Q S ++ RY
Sbjct: 515 LKEGDYVVHIHHGVGKFV--KIERTSAGGKERDFLKLEYSGGDSLFVPLDQIS-LVQRYI 571
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E+ R +L K +AW++ K + + A++ + DL+++Y +RLK + +P +
Sbjct: 572 GGTESPRLDSLGK----SAWKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQ 627
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG
Sbjct: 628 EEFEAEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAG 686
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
+Q M+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++V
Sbjct: 687 RQIMMLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVV 745
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH++L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALT
Sbjct: 746 GTHAILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALT 805
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G R+ S+I+TPP R ++T++ + + AI+ E+ R GQVFY+ R++ +EE ++
Sbjct: 806 GIRELSIIATPPKNRQSVETYVLEEEDDLIADAIRNEIQRDGQVFYLYNRVETIEEETNY 865
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L + P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+
Sbjct: 866 LSKLVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRA 925
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +
Sbjct: 926 DLFGLSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMR 985
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININP 690
D+ IRG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N
Sbjct: 986 DLEIRGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNF 1042
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYV 748
+P YI+ +E + E A +D+ + + + ++G+ P + ILL+K +
Sbjct: 1043 FIPETYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--I 1098
Query: 749 RRMAADIGITKIYASGKMVGMKT 771
R +A+ +G + + MK+
Sbjct: 1099 RTLASSLGFESVTEMKDEIKMKS 1121
>gi|134097431|ref|YP_001103092.1| transcription-repair coupling factor [Saccharopolyspora erythraea
NRRL 2338]
gi|291004579|ref|ZP_06562552.1| transcription-repair coupling factor [Saccharopolyspora erythraea
NRRL 2338]
gi|133910054|emb|CAM00166.1| transcription-repair coupling factor [Saccharopolyspora erythraea
NRRL 2338]
Length = 1195
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 268/733 (36%), Positives = 405/733 (55%), Gaps = 58/733 (7%)
Query: 140 NGAGGFSYK------------VDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEY 187
G GG S K VDP +L++GD+VVH++ GIGK+V + +T EY
Sbjct: 481 GGRGGTSTKDMRRMPSRRRNAVDPLALKAGDFVVHEQHGIGKYVEMVQRTVGGATR--EY 538
Query: 188 VFIEYADGMAKLPVKQASRMLYRYNLPNETKR------PRTLSKLSDTTAWERRKTKGKV 241
+ +EYA P R+ + +E R P TL+KL + W+ K K +
Sbjct: 539 LVLEYASSKRGQP---GDRLFVPTDQLDEVSRYVGGELP-TLNKLGGSD-WKNTKAKARK 593
Query: 242 AIQKMVVDLMELYLHRLKQKRPPYP---KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLT 298
A++++ +L++LY R Q P + P E FPY T DQ A +V+ D+
Sbjct: 594 AVKEIAAELVQLYAAR--QSAPGHAFGADTPWQRELEDAFPYTETGDQLAAIDEVKADM- 650
Query: 299 ERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 358
+R PMDR+ICGDVG+GKTE+A+RA F V GKQ VL PT +LA+QH + ++R +
Sbjct: 651 QRAVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLNTFTDRMRSF 710
Query: 359 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFG 418
P + V LSRF E E+ + G +++++GTH LL + V Y +LGL++VDEEQRFG
Sbjct: 711 P-VTVKGLSRFTDPLESEQTTTGLAEGTVDVVIGTHRLLQTGVRYKDLGLVIVDEEQRFG 769
Query: 419 VKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSK 478
V+ KE I + + VDVLT+SATPIPRTL +++ G R+ S I TPP ER P+ T++ A+ +
Sbjct: 770 VEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGAYDE 829
Query: 479 EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETME 538
++V +AI+ EL R GQVF+V R++ +E+ L++ P I AHGQ +LE+ ++
Sbjct: 830 KQVAAAIRRELLRDGQVFFVHNRVQTIEKAARHLRELVPEARIVTAHGQMNEDRLEKIIQ 889
Query: 539 KFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLF 598
F + +L+CT IVE+GLDI NANT+IV+ GL+QL+QLRGRVGRA + +AY
Sbjct: 890 GFWEREHDVLVCTTIVETGLDISNANTLIVERSDVLGLSQLHQLRGRVGRARERGYAYFL 949
Query: 599 YPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLF 658
YP++ L+D A +RLA + + ELG G +A KD+ IRG G I G +Q+G + VG DL+
Sbjct: 950 YPEEKPLTDTAHDRLATIAQNSELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLY 1009
Query: 659 FEMLFESLSKVDEHC-----VISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKA 713
++ E++ H V++D+ ++ +P +Y+ +E + A
Sbjct: 1010 VRLVGEAVEAFRRHAGAEPGAGEEELPEVRVDLPVDAHIPHDYVPGERLRLEAYRKI--A 1067
Query: 714 AEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASG--------- 764
A D L L +YG P +E LLK R++ G+T++ G
Sbjct: 1068 AAGDTEALDAVRAELTDRYGSLPEPVERLLKVAAFRQLCRAHGVTEVTQQGTSLRAAPLE 1127
Query: 765 ----KMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQ 820
++V +K K V+K + +++ V R + G +I A L + E LL+W +
Sbjct: 1128 LADSQLVRLKRLYPKAVYKAAVRTVS--VPRPTEGAAGGRIGAPPLRD---EALLDWCAK 1182
Query: 821 CLAELYASLPALI 833
L L A PA +
Sbjct: 1183 LLESL-AGRPAPV 1194
>gi|387138312|ref|YP_005694291.1| transcription-repair coupling factor [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|389850055|ref|YP_006352290.1| transcription-repair coupling factor [Corynebacterium
pseudotuberculosis 258]
gi|349734790|gb|AEQ06268.1| Transcription-repair-coupling factor [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|388247361|gb|AFK16352.1| Transcription-repair-coupling factor [Corynebacterium
pseudotuberculosis 258]
Length = 1264
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/699 (36%), Positives = 401/699 (57%), Gaps = 29/699 (4%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI--KFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
+VDP +L++GD+VVH+ GIG+F+ + + D T EY+ +EYA P Q
Sbjct: 513 RVDPLALKTGDFVVHETHGIGRFLKMTERTITSGDETSRREYIVLEYAPAKRGQPADQLF 572
Query: 206 RMLYRYNLPNE---TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
+ +L ++ ++P LSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 573 VPMDSLDLLSKYVGGEKP-ALSKMGGSD-WKNTKKKARAAVREIAGELVELYAKRQSAPG 630
Query: 263 PPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
P+ P +P E FPY T DQ A V+ D+ E+ PMDR+I GDVG+GKTEVA+
Sbjct: 631 HPFAPDSPWQYEMEDNFPYVETEDQMMAIEAVKADM-EKPVPMDRVIVGDVGYGKTEVAV 689
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F V GKQ +VL PT +LA+QH ER + +P + + LSRF S E +E +
Sbjct: 690 RAAFKAVQDGKQVVVLVPTTLLAQQHLSTFDERMAGFP-VNLRGLSRFTSTVEAKETIKG 748
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+ G ++I++GTH LL + + + NLGL++VDEEQRFGV+ KE I + + VDVLT+SATP
Sbjct: 749 LADGTVDIVIGTHRLLQTGIQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATP 808
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL +++ G R+ S I TPP +R PI T++ A +++ +AI+ EL R GQVF+V +
Sbjct: 809 IPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQIAAAIRRELLRDGQVFFVHNK 868
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
+ +E+ L++ P I +AHGQ LE+T++ F +L+CT IVE+GLDI
Sbjct: 869 VSDIEKKARDLRELVPEARIVVAHGQMSEELLEQTVQGFWDREFDVLVCTTIVETGLDIA 928
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP L++ + +RLA + + +
Sbjct: 929 NANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGQTLTENSYDRLATIAQNND 988
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISV 677
LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D V +
Sbjct: 989 LGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADGKIVDAT 1048
Query: 678 PY--KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKE 735
K ++ID+ ++ +P YIN +E+ + AA Q L+ E + +YG
Sbjct: 1049 DDGPKEIRIDLPVDAHIPESYINAERLRLEVYRKL--AASQSNADLILAVEEMEDRYGPL 1106
Query: 736 PYSMEILLKKLYVRRMAADIGITKIYASG---KMVGMKTNMNKKV-FKMMIDSMTSEVHR 791
P ++ LL +R +A GI+ I G K+ ++ +K+V K ++ S T
Sbjct: 1107 PEEVKRLLAVARLRHLAKSAGISDIGVQGTRIKIHPVELPDSKQVRLKRLLPSATYRAAA 1166
Query: 792 NSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
++ EG + + L ++ LL W+ L+E++
Sbjct: 1167 KAIQLSFPKEGRNVTDKPLRDV---ALLQWVADFLSEMF 1202
>gi|434382867|ref|YP_006704650.1| transcription-repair coupling factor [Brachyspira pilosicoli WesB]
gi|404431516|emb|CCG57562.1| transcription-repair coupling factor [Brachyspira pilosicoli WesB]
Length = 1196
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/595 (40%), Positives = 370/595 (62%), Gaps = 26/595 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGI--KFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYR 210
L GDY VH GIGK++G+ K K+ +Y+ +EYA G +PV+Q + + +
Sbjct: 490 LNIGDYAVHVNYGIGKYLGLTRKLSNGKEK----DYLTLEYAKGDKLYIPVEQMN-FVQK 544
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNP 269
Y + + P+ L+ L +AW++ K+K + DL+++Y R Y P
Sbjct: 545 Y-ISGSGEEPK-LTALG-GSAWDKIKSKAREDALATARDLIKIYAIRSNVHGNIYGPDTQ 601
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
+F A F YE T DQ +A D++ D+ E + MDRL+CGDVGFGKTEVA RAIF V
Sbjct: 602 WQDDFEASFNYEETVDQLRAINDIKSDM-ESDKMMDRLVCGDVGFGKTEVAFRAIFKAVM 660
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
AGKQ +L PT +L++QH++ +RF +P +++ +L+RF S + +++ +M+ +G +I
Sbjct: 661 AGKQCAILCPTTILSQQHYNNAKKRFEDFP-VRIEVLNRFISSRQAKKNKEMLANGSCDI 719
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
I+GTH LL + + NLGL+V+DEEQRFGVK KE + + DVLTLSATPIPRTL +A
Sbjct: 720 IIGTHMLLSDDIKFKNLGLIVIDEEQRFGVKHKEALKKLRFETDVLTLSATPIPRTLNMA 779
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
LTG RD S+I TPP R+P+KT++ F+++ V++AI+ EL R GQVFY+ RI +E
Sbjct: 780 LTGIRDISIIETPPLNRIPVKTYVMEFNEKTVVNAIERELKRNGQVFYLYNRIDTIESFA 839
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+++ P I +AHG+ QLE+ M F IL+ T I+E+G+DI NANTI++
Sbjct: 840 LMIKKLCPKASICVAHGRMTGIQLEKIMSDFINHKYDILVSTTIIENGIDIPNANTILID 899
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
+ GL++LYQLRGRVGR+D+EA+AY+FYP+ L++ A +RL A+ E +LG GF++A
Sbjct: 900 SANKLGLSELYQLRGRVGRSDREAYAYMFYPENLALTEVAYKRLQAISEHTDLGAGFKIA 959
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G I G++Q+G + VG +L+ +ML E+ ++ + V + +V ID N
Sbjct: 960 MRDLEIRGAGNILGKEQSGMIYQVGYELYTQMLEEATNEYKGE-IKEVTFDTV-IDFKHN 1017
Query: 690 PRLPSEYINHLENPMEMVNEAE----KAAEQDIWCLMQFTESLRRQYGKEPYSME 740
+P EYI+ +P E ++ + +++DI ++ + +YGK P ME
Sbjct: 1018 LFIPDEYIS---DPKEKISVYKLIMRSQSDEDIDIAKEY---MIDKYGKMPKEME 1066
>gi|379714990|ref|YP_005303327.1| transcription-repair coupling factor [Corynebacterium
pseudotuberculosis 316]
gi|377653696|gb|AFB72045.1| Transcription-repair-coupling factor [Corynebacterium
pseudotuberculosis 316]
Length = 1263
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/699 (36%), Positives = 401/699 (57%), Gaps = 29/699 (4%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI--KFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
+VDP +L++GD+VVH+ GIG+F+ + + D T EY+ +EYA P Q
Sbjct: 512 RVDPLALKTGDFVVHETHGIGRFLKMTERTITSGDETSRREYIVLEYAPAKRGQPADQLF 571
Query: 206 RMLYRYNLPNE---TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
+ +L ++ ++P LSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 572 VPMDSLDLLSKYVGGEKP-ALSKMGGSD-WKNTKKKARAAVREIAGELVELYAKRQSAPG 629
Query: 263 PPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
P+ P +P E FPY T DQ A V+ D+ E+ PMDR+I GDVG+GKTEVA+
Sbjct: 630 HPFAPDSPWQYEMEDNFPYVETEDQMMAIEAVKADM-EKPVPMDRVIVGDVGYGKTEVAV 688
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F V GKQ +VL PT +LA+QH ER + +P + + LSRF S E +E +
Sbjct: 689 RAAFKAVQDGKQVVVLVPTTLLAQQHLSTFDERMAGFP-VNLRGLSRFTSTVEAKETIKG 747
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+ G ++I++GTH LL + + + NLGL++VDEEQRFGV+ KE I + + VDVLT+SATP
Sbjct: 748 LADGTVDIVIGTHRLLQTGIQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATP 807
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL +++ G R+ S I TPP +R PI T++ A +++ +AI+ EL R GQVF+V +
Sbjct: 808 IPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQIAAAIRRELLRDGQVFFVHNK 867
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
+ +E+ L++ P I +AHGQ LE+T++ F +L+CT IVE+GLDI
Sbjct: 868 VSDIEKKARDLRELVPEARIVVAHGQMSEELLEQTVQGFWDREFDVLVCTTIVETGLDIA 927
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP L++ + +RLA + + +
Sbjct: 928 NANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGQTLTENSYDRLATIAQNND 987
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISV 677
LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D V +
Sbjct: 988 LGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGETVEAYRALADGKIVDAT 1047
Query: 678 PY--KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKE 735
K ++ID+ ++ +P YIN +E+ + AA Q L+ E + +YG
Sbjct: 1048 DDGPKEIRIDLPVDAHIPESYINAERLRLEVYRKL--AASQSNADLILAVEEMEDRYGPL 1105
Query: 736 PYSMEILLKKLYVRRMAADIGITKIYASG---KMVGMKTNMNKKV-FKMMIDSMTSEVHR 791
P ++ LL +R +A GI+ I G K+ ++ +K+V K ++ S T
Sbjct: 1106 PEEVKRLLAVARLRHLAKSAGISDIGVQGTRIKIHPVELPDSKQVRLKRLLPSATYRAAA 1165
Query: 792 NSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
++ EG + + L ++ LL W+ L+E++
Sbjct: 1166 KAIQLSFPKEGRNVTDKPLRDV---ALLQWVADFLSEMF 1201
>gi|431808760|ref|YP_007235658.1| transcription-repair coupling factor [Brachyspira pilosicoli
P43/6/78]
gi|430782119|gb|AGA67403.1| transcription-repair coupling factor [Brachyspira pilosicoli
P43/6/78]
Length = 1196
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/595 (40%), Positives = 370/595 (62%), Gaps = 26/595 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGI--KFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYR 210
L GDY VH GIGK++G+ K K+ +Y+ +EYA G +PV+Q + + +
Sbjct: 490 LNIGDYAVHVNYGIGKYLGLTRKLSNGKEK----DYLTLEYAKGDKLYIPVEQMN-FVQK 544
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNP 269
Y + + P+ L+ L +AW++ K+K + DL+++Y R Y P
Sbjct: 545 Y-ISGSGEEPK-LTALG-GSAWDKIKSKAREDALATARDLIKIYAIRSNVHGNIYGPDTQ 601
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
+F A F YE T DQ +A D++ D+ E + MDRL+CGDVGFGKTEVA RAIF V
Sbjct: 602 WQDDFEASFNYEETVDQLRAINDIKSDM-ESDKMMDRLVCGDVGFGKTEVAFRAIFKAVM 660
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
AGKQ +L PT +L++QH++ +RF +P +++ +L+RF S + +++ +M+ +G +I
Sbjct: 661 AGKQCAILCPTTILSQQHYNNAKKRFEDFP-VRIEVLNRFISSRQAKKNKEMLANGSCDI 719
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
I+GTH LL + + NLGL+V+DEEQRFGVK KE + + DVLTLSATPIPRTL +A
Sbjct: 720 IIGTHMLLSDDIKFKNLGLIVIDEEQRFGVKHKEALKKLRFETDVLTLSATPIPRTLNMA 779
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
LTG RD S+I TPP R+P+KT++ F+++ V++AI+ EL R GQVFY+ RI +E
Sbjct: 780 LTGIRDISIIETPPLNRIPVKTYVMEFNEKTVVNAIERELKRNGQVFYLYNRIDTIESFA 839
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+++ P I +AHG+ QLE+ M F IL+ T I+E+G+DI NANTI++
Sbjct: 840 LMIKKLCPKASICVAHGRMTGIQLEKIMSDFINHKYDILVSTTIIENGIDIPNANTILID 899
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
+ GL++LYQLRGRVGR+D+EA+AY+FYP+ L++ A +RL A+ E +LG GF++A
Sbjct: 900 SANKLGLSELYQLRGRVGRSDREAYAYMFYPENLALTEVAYKRLQAISEHTDLGAGFKIA 959
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G I G++Q+G + VG +L+ +ML E+ ++ + V + +V ID N
Sbjct: 960 MRDLEIRGAGNILGKEQSGMIYQVGYELYTQMLEEATNEYKGE-IKEVTFDTV-IDFKHN 1017
Query: 690 PRLPSEYINHLENPMEMVNEAE----KAAEQDIWCLMQFTESLRRQYGKEPYSME 740
+P EYI+ +P E ++ + +++DI ++ + +YGK P ME
Sbjct: 1018 LFIPDEYIS---DPKEKISVYKLIMRSQSDEDIDTAKEY---MIDKYGKMPKEME 1066
>gi|326202452|ref|ZP_08192321.1| transcription-repair coupling factor [Clostridium papyrosolvens DSM
2782]
gi|325987570|gb|EGD48397.1| transcription-repair coupling factor [Clostridium papyrosolvens DSM
2782]
Length = 1174
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 237/617 (38%), Positives = 388/617 (62%), Gaps = 16/617 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADG-MAKLPVKQA 204
K+ +S L GD+VVH+ GIG+++GI K V + +Y+ I Y +G +P Q
Sbjct: 497 KIKAFSDLNVGDFVVHQAHGIGQYIGIEKLSV---GEIKRDYLKIRYQEGDFLYIPTNQL 553
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+L +Y + +E K P+ ++KL T W + K + K ++Q++ +L++LY R K
Sbjct: 554 D-LLQKY-IGSEGKTPK-VNKLG-GTEWAKTKNRVKESLQQLAAELIKLYAQRQSAKGHA 609
Query: 265 YPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ ++ +F FPY+ T DQ K ++++D+ E E MDRL+CGDVG+GKTEVA+RA
Sbjct: 610 FCEDTVWQRQFEELFPYQETDDQLKCIDEIKKDM-ESERLMDRLLCGDVGYGKTEVAIRA 668
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
+F V GKQ LAPT +LA+Q ++ +R S +P + V ++SRF++ AE+++ + +K
Sbjct: 669 VFKSVMDGKQVAYLAPTTILAQQLYENFKKRMSDFP-VTVDVMSRFRTPAEQKKIVKSVK 727
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G+ +I++GTH LL + + +LGLLVVDEEQRFGV KEK+ + K +VDVLTL+ATPIP
Sbjct: 728 AGNTDILIGTHRLLQKDIEFKDLGLLVVDEEQRFGVTHKEKLKTLKPNVDVLTLTATPIP 787
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL+++L G RD S++ PP ER P++T++ ++ E + I E+ R GQVFY+ R++
Sbjct: 788 RTLHMSLVGIRDISVLEDPPEERYPVQTYVMEYNMELIRDGIIREMARNGQVFYMYNRVR 847
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G++ ++ P +A+AHGQ ++LE+ M F G +L+CT I+ESGLD+ N
Sbjct: 848 GIDLKAQEIRTMIPEARVAVAHGQMNEKELEDVMYGFINGEYDVLVCTTIIESGLDMPNV 907
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTI+V+D + GL+QLYQ+RGRVGR+++ A+AY+ Y +LS+ A +RL A++E E G
Sbjct: 908 NTIVVEDADRMGLSQLYQIRGRVGRSNRLAYAYITYKKDKVLSEVAEKRLQAIKEFTEFG 967
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G +Q G + VG +++ ++L E++ ++ V + + +
Sbjct: 968 SGFRIAMRDLEIRGAGNLLGPEQHGHLETVGYEMYCKLLDEAVQELSGKEVRTTD-EEMA 1026
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N+N + EYI+ E ++M + AA Q+ ++ + L +YG P +E L+
Sbjct: 1027 VDLNVNAYIDDEYISSEEQKIDMYKKI--AAIQNENDVIDLRDELIDRYGDIPEEVENLM 1084
Query: 744 KKLYVRRMAADIGITKI 760
Y++ +A + G I
Sbjct: 1085 DIAYIKALAVECGFIGI 1101
>gi|405983259|ref|ZP_11041569.1| transcription-repair coupling factor [Slackia piriformis YIT 12062]
gi|404389267|gb|EJZ84344.1| transcription-repair coupling factor [Slackia piriformis YIT 12062]
Length = 1205
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 244/620 (39%), Positives = 377/620 (60%), Gaps = 22/620 (3%)
Query: 157 GDYVVHKKVGIGKFVGIKFDVQKD-STVPIEYVFIEYADG-MAKLPVKQASRMLYRYNLP 214
GDYVVH GI F + V++D + +Y+ +EYA+G +PV+Q R + RY P
Sbjct: 522 GDYVVHAAHGIALFKDL---VRQDVGGMMRDYLLLEYAEGDKLFVPVEQLDR-VTRYVGP 577
Query: 215 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAE 273
E PR ++L +T+ W R +K + A +++ DL+++Y R + Y P P E
Sbjct: 578 -EGSSPRC-TRL-NTSDWSRALSKARKATKELAFDLVDVYTRRASVQGFRYAPDTPWQRE 634
Query: 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 333
FPY+ TPDQ A +V+ D+ + PMDRL+CGDVGFGKTEVALRA F KQ
Sbjct: 635 MEEAFPYDETPDQLSAIAEVKADM-QSSKPMDRLVCGDVGFGKTEVALRAAFKATQDNKQ 693
Query: 334 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 393
MVL PT +LA+QH+ ERF + D+ V +LSRF+S AE++ L+ G + ++VGT
Sbjct: 694 VMVLCPTTILAQQHYTTFKERFDPF-DVHVEVLSRFRSPAEQKLALEGFAKGTVQVLVGT 752
Query: 394 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 453
H LL V ++LGL+++DEEQRFGV KE++ + + +DVLTLSATPIPRT+ ++L+G
Sbjct: 753 HRLLSRDVNPHDLGLVIIDEEQRFGVGHKEQMKNLREQIDVLTLSATPIPRTMQMSLSGV 812
Query: 454 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 513
RD SLI TPP R P++ H+ + + V AI+ EL RGGQV+YV R++ ++E ++ +
Sbjct: 813 RDMSLILTPPDNRRPVEVHVGEWDVDVVSEAIRRELQRGGQVYYVSNRVRTIDEAVERVG 872
Query: 514 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 573
A + +AHG+ +LE ME F+ GAI +L+ T I+ESG+D + NT+I++D Q+
Sbjct: 873 AAAAEARVGVAHGKMTKEELERVMEDFSAGAIDVLVATTIIESGIDNPHTNTLIIEDSQR 932
Query: 574 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 633
GLAQ+YQL+GRVGR+ +A+AY +PD L+++A+ RL A+ E R+LG G ++A +D+
Sbjct: 933 LGLAQMYQLKGRVGRSSVQAYAYFMFPDNVSLTEEAMARLDAINEHRDLGSGMRVAMRDL 992
Query: 634 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV-----DEHCVISVPYKSVQIDINI 688
IRG G++ G +Q+G++ VG DLF +ML ++++ E V+ + ++
Sbjct: 993 EIRGAGSLLGAEQSGNMSGVGFDLFAQMLSQAVANAREGASGEDAVLPPALSDITVNFPE 1052
Query: 689 NPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLM-QFTESLRRQYGKEPYSMEILLKKLY 747
+ +P EY++ + E V K A D ++ + E +YG P + + K
Sbjct: 1053 HTYIPEEYVSDAD---ERVLLYRKLACADTPSVVEELREQTSERYGAMPQACTNMFAKSL 1109
Query: 748 VRRMAADIGITKI-YASGKM 766
VR A + G+ + ++GK+
Sbjct: 1110 VRAWANEHGVKLVGVSAGKL 1129
>gi|423658448|ref|ZP_17633747.1| transcription-repair coupling factor [Bacillus cereus VD200]
gi|401287781|gb|EJR93552.1| transcription-repair coupling factor [Bacillus cereus VD200]
Length = 1176
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENIV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|307609748|emb|CBW99260.1| transcription-repair coupling factor [Legionella pneumophila 130b]
Length = 1153
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 256/656 (39%), Positives = 384/656 (58%), Gaps = 16/656 (2%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRML 208
D LR G VVH + G+G++ G+++ + + T P E++ + YA D +PV + M+
Sbjct: 476 DMAELRLGAPVVHLQFGVGRYQGLQY-IDSNGT-PSEFLVLAYAGDDKIYVPVT-SLHMI 532
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
RY + P L KL + W++ K K I + ++L++LY R Q Y N
Sbjct: 533 SRYTGVDSEHAP--LHKLG-SDQWQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFN 589
Query: 269 PA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
+ +FA+ FP+ TPDQ +A + +D+ + PMDRLICGDVGFGKTEVA+RA F
Sbjct: 590 QSEYIKFASGFPFTETPDQLQAIEQIIKDM-QSPRPMDRLICGDVGFGKTEVAMRAAFVA 648
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V GKQ +LAPT +LA QHF+ +RF+++P + + LLSRF+S E E L ++ G +
Sbjct: 649 VQNGKQVCILAPTTLLAGQHFESFRDRFAEFP-VNIELLSRFRSNKESEAVLAALQSGKV 707
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH L + + + NLGLL++DEE RFGVKQKE I S + VD+L+++ATPIPRTL
Sbjct: 708 DIVIGTHKLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLN 767
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+A+ G RD SLI+TPP +RL IKT + + AI E+ RGGQVFY+ ++ +E
Sbjct: 768 MAMAGIRDISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYLHNNVQTIER 827
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
L+ P I AHGQ RQLE M F +L+CT I+E+G+DI ANTII
Sbjct: 828 VCQDLEALVPEAKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTANTII 887
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ +FGLAQL+QLRGRVGR+ +A+AYL P++ LL+ A++RL A+ +LG GF
Sbjct: 888 IDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFT 947
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVP-YKSVQI 684
LA D+ IRG G + GE+Q+G++ +G +LF EML +++ K + +S P ++ +I
Sbjct: 948 LATHDLEIRGAGELLGEEQSGNMHAIGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEI 1007
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+ I+ +P +YI + N + M A + L + L ++G P ++ L
Sbjct: 1008 DLRISAIIPEDYIGDIHNRLIMYKRIANA--KTTQQLRELQIELIDRFGLLPQPVKHLFL 1065
Query: 745 KLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 800
++ AA +GI KI AS + + + + + S+ +VH EG Q
Sbjct: 1066 ITELKLKAAQLGIQKISASAQQGKLDFSEKPSIDPGTLISLI-QVHAKRYQMEGPQ 1120
>gi|336392390|ref|ZP_08573789.1| transcription-repair coupling factor [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 1173
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 257/702 (36%), Positives = 406/702 (57%), Gaps = 51/702 (7%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNL 213
L GDYVVH GIGK+VG++ ++ D +Y+ I Y D AKL + + L + +
Sbjct: 497 LNPGDYVVHVNHGIGKYVGMQ-TLEVDGAHQ-DYITILYQDN-AKLFIPVSQLNLVQKYV 553
Query: 214 PNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIA 272
+E K PR ++KL + W + K K I+ + DL+ELY R +K + P N
Sbjct: 554 ASEGKTPR-VNKLGGS-EWAKTKRKVSSKIEDIADDLIELYAQREAEKGYAFSPDNEYQR 611
Query: 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK 332
EF FPY T DQ ++ +++ D+ ER PMDRL+ GDVGFGKTEVALRAIF + GK
Sbjct: 612 EFEDAFPYTETDDQLRSVAEIKHDM-ERPKPMDRLLVGDVGFGKTEVALRAIFKAIQDGK 670
Query: 333 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392
QA L PT +LA+QHFD + +RF+ +P ++V LLSRF++ + + L IK G ++++G
Sbjct: 671 QAAFLVPTTILAQQHFDTMMQRFADFP-VQVELLSRFRTAKQIKASLAAIKSGQADVVIG 729
Query: 393 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTG 452
TH +L V + +LGLLVVDEEQRFGVK KE++ + + +VDVLT++ATPIPRTL +++ G
Sbjct: 730 THRILSKDVEFRDLGLLVVDEEQRFGVKAKERLKTLRSNVDVLTMTATPIPRTLNMSMVG 789
Query: 453 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 512
RD S+I TPP R P++T++ + + S I+ EL RGGQVFY+ R++ +E + +
Sbjct: 790 VRDLSVIETPPANRYPVQTYVMEQNAGALRSGIERELARGGQVFYLHNRVEDIERTVANI 849
Query: 513 QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 572
+ P + AHGQ QLE T+ +F G +++ T I+E+G+++ N NT+ V+D
Sbjct: 850 EALVPEATVTYAHGQMTEAQLENTLYEFVHGQYDVIVTTTIIENGVNMPNVNTLFVEDAD 909
Query: 573 QFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKD 632
GLAQLYQLRGRVGR+ + +AY Y +L++ + +RLAA+ + E+G GF++A +D
Sbjct: 910 HMGLAQLYQLRGRVGRSSRVGYAYFMYRQDKVLTEISEKRLAAIRDFTEIGSGFKIAMRD 969
Query: 633 MGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRL 692
+ IRG G + G+QQ G + +VG DL+ +ML +++++ V + ++D+ I L
Sbjct: 970 LSIRGAGNLLGKQQHGFIDSVGYDLYSQMLADAVAQKQGKAVQA--KSDAELDLGIEAYL 1027
Query: 693 PSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
PSEYI +E+ V E A+ L + L ++G P + LL
Sbjct: 1028 PSEYITDQRQKIELYKRVRELSSPAD-----LEELQADLFDRFGDYPDPVAHLLA----- 1077
Query: 750 RMAADIGITKIYASGKMV-----------------GMKTNMNKKVFKMMIDSMTSEVHRN 792
IG+ K+YA +V G + + VFK +++ +
Sbjct: 1078 -----IGLLKVYADQALVERIRHVDQQLRVKLSAKGTRQIAPEDVFK----ALSKTKLKA 1128
Query: 793 SLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLPALIK 834
++ +GD++ L+++ P+ + +W+ + L + L A+++
Sbjct: 1129 TVKMDGDKLVITLIIQ-PKMRQPDWL-EELTQFLTGLAAIVQ 1168
>gi|228937356|ref|ZP_04100003.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228976812|ref|ZP_04137225.1| Transcription-repair-coupling factor [Bacillus thuringiensis Bt407]
gi|228782908|gb|EEM31073.1| Transcription-repair-coupling factor [Bacillus thuringiensis Bt407]
gi|228822314|gb|EEM68295.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 1183
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 500 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 556
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 557 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 612
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 613 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 671
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 672 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 730
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 731 DGTIDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 790
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 791 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 850
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 851 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 910
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 911 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 970
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 971 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENTV---- 1026
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1027 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1082
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1083 VGYLLQIANIKVLA 1096
>gi|423416553|ref|ZP_17393642.1| transcription-repair coupling factor [Bacillus cereus BAG3X2-1]
gi|401110207|gb|EJQ18118.1| transcription-repair coupling factor [Bacillus cereus BAG3X2-1]
Length = 1176
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/614 (39%), Positives = 382/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|423461684|ref|ZP_17438480.1| transcription-repair coupling factor [Bacillus cereus BAG5X2-1]
gi|401135346|gb|EJQ42945.1| transcription-repair coupling factor [Bacillus cereus BAG5X2-1]
Length = 1176
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|386360593|ref|YP_006058838.1| transcription-repair coupling factor Mfd [Thermus thermophilus
JL-18]
gi|383509620|gb|AFH39052.1| transcription-repair coupling factor Mfd [Thermus thermophilus
JL-18]
Length = 978
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/615 (41%), Positives = 365/615 (59%), Gaps = 20/615 (3%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRML 208
DP +L GDY++H + G+G+++G+ + ++ V +Y+ + Y +G LPV+Q +L
Sbjct: 315 DPGALSPGDYLIHPEHGVGQYLGL--ETREVLGVKRDYLVLRYKGEGKLYLPVEQLP-LL 371
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK---QKRPPY 265
R+ P T P LS L W+R K + + ++++ L+ L R + PP
Sbjct: 372 KRH--PGTTDDPPELSSLGKNE-WQRAKERARKDVEELAGRLLVLQAKRKATPGRAFPPL 428
Query: 266 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
P+ + E FPYE TPDQK+A +V RDL E PMDRL+ GDVGFGKTEVALRA
Sbjct: 429 PEWDPLVE--KGFPYELTPDQKRALEEVLRDL-ESPHPMDRLVSGDVGFGKTEVALRAAH 485
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
VV G Q L PT +LA+QH ERF P ++V +LSRF E+E L + G
Sbjct: 486 RVVGHGAQVAFLVPTTLLAEQHGKTFRERFQGLP-VRVAVLSRFTPPKEEEAILKGLAEG 544
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++I++GTH LL V + +LGLL+VDEE RFGV QKE+I K VD L LSATPIPRT
Sbjct: 545 TVDIVIGTHRLLQEDVRFRDLGLLIVDEEHRFGVAQKERIRELKAEVDTLYLSATPIPRT 604
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
LY AL G +D S I TPPP R PIKT L+ F V AI +EL+RGG+VFYV R+ +
Sbjct: 605 LYSALVGLKDLSSIQTPPPGRKPIKTFLAPFDPLLVREAILFELERGGKVFYVHDRVASI 664
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
E FL+ P I + HGQ +EETM FA+GA +L+ T I+E+GLD+ ANT
Sbjct: 665 EARRRFLESLVPEARIGVVHGQMPESLIEETMLLFAEGAYDVLLATTIIEAGLDVPEANT 724
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
I+++ + GLA LYQLRGRVGR ++EA+AYLF+P + L++ A +RLAA+ + +LG G
Sbjct: 725 ILIERADRLGLATLYQLRGRVGRREEEAYAYLFHPPR--LTEAAEKRLAAIADLSDLGSG 782
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
LAE+DM IRG G + G +Q G + + ++++ E+L E++ K+ + + V +D
Sbjct: 783 HLLAERDMEIRGVGNLLGPEQHGHIRALSLEVYTELLEEAIRKLKGE--VKEERRHVTLD 840
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ ++ RLP+EY+ LE + +A + + L + L+ +YG P E +
Sbjct: 841 LALSARLPAEYVGSLEARSRYYSRFAEA--KSLAELSRLVRELKERYGPLPEEAENFVNL 898
Query: 746 LYVRRMAADIGITKI 760
+R +A G+ I
Sbjct: 899 TRLRLVAERKGVVSI 913
>gi|229170904|ref|ZP_04298507.1| Transcription-repair-coupling factor [Bacillus cereus MM3]
gi|228612570|gb|EEK69789.1| Transcription-repair-coupling factor [Bacillus cereus MM3]
Length = 1176
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGIENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|56418583|ref|YP_145901.1| transcription-repair coupling factor [Geobacillus kaustophilus
HTA426]
gi|56378425|dbj|BAD74333.1| transcription-repair coupling factor [Geobacillus kaustophilus
HTA426]
Length = 1177
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 241/612 (39%), Positives = 376/612 (61%), Gaps = 25/612 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIGK++GI + + + V +Y+ I+Y G +PV Q ++ +
Sbjct: 500 LQVGDYVVHVNHGIGKYLGI--ETLEINGVHKDYIHIQYQGGDTLYVPVDQIDQV--QKY 555
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K P+ + KL + W++ K K + ++Q + DL++LY R K + P
Sbjct: 556 VGSEGKEPK-IYKLGGSE-WKKVKRKVESSVQDIAEDLIKLYAEREASKGYAFSPDTEMQ 613
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A FPY+ T DQ ++ +++RD+ E + PMDRL+CGDVG+GKTEVALRA F + G
Sbjct: 614 REFEAAFPYQETEDQLRSIEEIKRDM-ESDKPMDRLLCGDVGYGKTEVALRAAFKAIMDG 672
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ V ERF +P IKVGLL+RF++K ++ E + +K G +++++
Sbjct: 673 KQVAFLVPTTILAQQHYETVRERFQGFP-IKVGLLNRFRTKKQQAETIKGLKDGTIDMVI 731
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIPRTL++++
Sbjct: 732 GTHRLLSKDVEFKDLGLLIIDEEQRFGVAHKEKIKQLKANIDVLTLTATPIPRTLHMSMI 791
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T++ ++ E V AI+ EL R GQVF++ I+ ++ +
Sbjct: 792 GVRDLSIIETPPENRFPVQTYVMEYTPELVKEAIERELARDGQVFFLYNHIEDIDLKAEE 851
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+ Q P + HG+ +LE T+ F +G +L+ T I+E+G+DI N NT+IV D
Sbjct: 852 IAQLVPEARVTYVHGRMSETELESTILAFLEGQYDVLVTTTIIETGIDIPNVNTLIVYDA 911
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +
Sbjct: 912 DRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNEAAEKRLQAIKEFTELGSGFKIAMR 971
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK------VDEHCVISVPYKSVQID 685
D+ IRG G I G +Q G + +VG DL+ +ML E++ K DE V ID
Sbjct: 972 DLSIRGAGNILGAEQHGFIDSVGFDLYSQMLKEAIEKRRGIKREDEQ-------PDVVID 1024
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ ++ +PS YI +EM + A + + + + E + ++G P + L +
Sbjct: 1025 VEVDAYIPSTYIADELQKIEMYKRFK--AVETLEDIEELREEMVDRFGDYPDEVAYLFQI 1082
Query: 746 LYVRRMAADIGI 757
++ +A +G+
Sbjct: 1083 AELKVLAKQLGV 1094
>gi|417764323|ref|ZP_12412292.1| transcription-repair coupling factor [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|418711978|ref|ZP_13272726.1| transcription-repair coupling factor [Leptospira interrogans str. UI
08452]
gi|400353472|gb|EJP05643.1| transcription-repair coupling factor [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|410791557|gb|EKR85230.1| transcription-repair coupling factor [Leptospira interrogans str. UI
08452]
Length = 1180
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/623 (39%), Positives = 391/623 (62%), Gaps = 21/623 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRMLYRYN 212
L+ GDYVVH G+GKF +K + +++ +EY+ G + +P+ Q S ++ RY
Sbjct: 514 LKEGDYVVHIHHGVGKF--LKIERTSAGGKERDFLKLEYSGGDSLFVPLDQIS-LVQRYI 570
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E+ R +L K + W++ K + + A++ + DL+++Y +RLK + +P +
Sbjct: 571 GGTESPRLDSLGK----STWKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQ 626
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG
Sbjct: 627 EEFEAEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAG 685
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
+Q M+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++V
Sbjct: 686 RQIMMLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVV 744
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH++L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALT
Sbjct: 745 GTHAILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALT 804
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G R+ S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++
Sbjct: 805 GIRELSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNY 864
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L + P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+
Sbjct: 865 LSKLVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRA 924
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +
Sbjct: 925 DLFGLSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMR 984
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININP 690
D+ IRG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N
Sbjct: 985 DLEIRGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNF 1041
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYV 748
+P YI+ +E + E A +D+ + + + ++G+ P + ILL+K +
Sbjct: 1042 FIPETYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--I 1097
Query: 749 RRMAADIGITKIYASGKMVGMKT 771
R +A+++G + + MK+
Sbjct: 1098 RTLASNLGFEFVTEMKDEIKMKS 1120
>gi|229148463|ref|ZP_04276720.1| Transcription-repair-coupling factor [Bacillus cereus m1550]
gi|228635005|gb|EEK91577.1| Transcription-repair-coupling factor [Bacillus cereus m1550]
Length = 1176
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 382/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH + + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHHETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALIREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENIV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|118475824|ref|YP_892975.1| transcription-repair coupling factor [Bacillus thuringiensis str. Al
Hakam]
gi|118415049|gb|ABK83468.1| transcription-repair coupling factor [Bacillus thuringiensis str. Al
Hakam]
Length = 1207
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 524 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 580
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 581 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 636
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 637 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 695
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 696 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 754
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 755 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 814
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 815 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 874
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 875 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 934
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 935 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 994
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 995 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1050
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1051 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1106
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1107 VGYLLQIANIKVLA 1120
>gi|417925667|ref|ZP_12569086.1| transcription-repair coupling factor [Finegoldia magna
SY403409CC001050417]
gi|341591293|gb|EGS34501.1| transcription-repair coupling factor [Finegoldia magna
SY403409CC001050417]
Length = 1168
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 238/616 (38%), Positives = 385/616 (62%), Gaps = 16/616 (2%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASR 206
V+ L DYVVH+ GIG++ GI K DV + + +Y+ I+Y A+ +P Q +
Sbjct: 497 VNYSDLNIDDYVVHENHGIGQYKGIEKIDV---NGIQKDYIVIQYKANDRLMIPTDQMN- 552
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP 266
++ +Y K+P +L+KLS W + K K K ++ +M DL+ELY R K K +
Sbjct: 553 LVQKYIGGGNVKKP-SLNKLS-GNDWAKAKQKAKKSVDEMADDLVELYSKRAKLKGYQFS 610
Query: 267 KNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
++ EF FPYE T Q ++ +++ D+ E + PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 611 QDTEWQREFEDSFPYEETDSQVRSIEEIKADM-ESDRPMDRLLCGDVGYGKTEVAIRACF 669
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
+ GKQ L PT +LA+QHF+ + ERF YP I+V ++SRF S A +++ + ++ G
Sbjct: 670 KAIMDGKQVAFLVPTTILAQQHFNTIKERFRDYP-IRVEMMSRFVSPARQKQIMKDVQRG 728
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++++VGTH +L + + +LGLLV+DEEQRFGV+ KEK+ S + +VDVLTLSATPIPRT
Sbjct: 729 LVDLLVGTHRILSKNLKFKDLGLLVIDEEQRFGVRHKEKLKSMRENVDVLTLSATPIPRT 788
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L + LTG RD SL+ PP +R PI T+++ ++ + AI ELDRGGQ+++V RI+ +
Sbjct: 789 LQMGLTGIRDMSLLEEPPEDRTPISTYVTEYNPSLIRDAIIRELDRGGQIYFVYNRIEDI 848
Query: 506 EEPMDF-LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
++ M+F L++ P ++IAIAHG+ ++LE M F G +L+CT I+E+GLDIQN N
Sbjct: 849 DQ-MEFKLKELVPELNIAIAHGRMNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVN 907
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+I+ + + GL+QLYQL+GR+GR+D+ + AY Y + L++ + +RL A+++ E G
Sbjct: 908 TMIIYNADKMGLSQLYQLKGRIGRSDRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFGS 967
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ +RG G + GE Q G + +G DL+ ++L +++ + IS +V I
Sbjct: 968 GFKIAMRDLELRGAGNLLGESQHGHIAKIGYDLYVKLLEQAVREAKGET-ISENKNTVII 1026
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
+I +N +P +YI+ E +++ + ++D + + + L ++G P + ++
Sbjct: 1027 EIKVNGYIPEDYISENETKIDIYKKIASIQDEDDYS--EIIDELIDRFGDVPKPIVNIMD 1084
Query: 745 KLYVRRMAADIGITKI 760
++ A + I I
Sbjct: 1085 VSIIKAFCARLSIESI 1100
>gi|423480171|ref|ZP_17456883.1| transcription-repair coupling factor [Bacillus cereus BAG6X1-1]
gi|402423674|gb|EJV55880.1| transcription-repair coupling factor [Bacillus cereus BAG6X1-1]
Length = 1176
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/614 (39%), Positives = 382/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|229142859|ref|ZP_04271302.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST24]
gi|228640622|gb|EEK97009.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST24]
Length = 1183
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 500 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 556
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 557 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 612
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 613 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 671
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 672 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 730
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 731 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 790
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 791 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 850
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 851 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 910
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 911 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 970
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 971 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENIV---- 1026
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1027 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1082
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1083 VGYLLQIANIKVLA 1096
>gi|423399538|ref|ZP_17376734.1| transcription-repair coupling factor [Bacillus cereus BAG2X1-1]
gi|423410230|ref|ZP_17387377.1| transcription-repair coupling factor [Bacillus cereus BAG2X1-3]
gi|401643594|gb|EJS61290.1| transcription-repair coupling factor [Bacillus cereus BAG2X1-1]
gi|401649039|gb|EJS66629.1| transcription-repair coupling factor [Bacillus cereus BAG2X1-3]
Length = 1176
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/614 (39%), Positives = 382/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLN 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVS--TIEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ V+ +A
Sbjct: 1076 VGYLLQIANVKVLA 1089
>gi|387140318|ref|YP_005696296.1| transcription-repair coupling factor [Corynebacterium
pseudotuberculosis 1/06-A]
gi|355392109|gb|AER68774.1| Transcription-repair-coupling factor [Corynebacterium
pseudotuberculosis 1/06-A]
Length = 1264
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/699 (36%), Positives = 401/699 (57%), Gaps = 29/699 (4%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI--KFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
+VDP +L++GD+VVH+ GIG+F+ + + D T EY+ +EYA P Q
Sbjct: 513 RVDPLALKTGDFVVHETHGIGRFLKMTERTITSGDETSRREYIVLEYAPAKRGQPADQLF 572
Query: 206 RMLYRYNLPNE---TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
+ +L ++ ++P LSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 573 VPMDSLDLLSKYVGGEKP-ALSKMGGSD-WKNTKKKARAAVREIAGELVELYAKRQSAPG 630
Query: 263 PPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
P+ P +P E FPY T DQ A V+ D+ E+ PMDR+I GDVG+GKTEVA+
Sbjct: 631 HPFAPDSPWQYEMEDNFPYVETEDQMMAIEAVKADM-EKPVPMDRVIVGDVGYGKTEVAV 689
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F V GKQ +VL PT +LA+QH ER + +P + + LSRF S E +E +
Sbjct: 690 RAAFKAVQDGKQVVVLVPTTLLAQQHLSTFDERMAGFP-VNLRGLSRFTSTVEAKETIKG 748
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+ G ++I++GTH LL + + + NLGL++VDEEQRFGV+ KE I + + VDVLT+SATP
Sbjct: 749 LADGTVDIVIGTHRLLQTGIQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATP 808
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL +++ G R+ S I TPP +R PI T++ A +++ +AI+ EL R GQVF+V +
Sbjct: 809 IPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQIAAAIRRELLRDGQVFFVHNK 868
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
+ +E+ L++ P I +AHGQ LE+T++ F +L+CT IVE+GLDI
Sbjct: 869 VSDIEKKARDLRELVPEARIVVAHGQMSEELLEQTVQGFWDREFDVLVCTTIVETGLDIA 928
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP L++ + +RLA + + +
Sbjct: 929 NANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGQTLTENSYDRLATIAQNND 988
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISV 677
LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D V +
Sbjct: 989 LGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGETVEAYRALADGKIVDAT 1048
Query: 678 PY--KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKE 735
K ++ID+ ++ +P YIN +E+ + AA Q L+ E + +YG
Sbjct: 1049 DDGPKEIRIDLPVDAHIPESYINAERLRLEVYRKL--AASQSNADLILAVEEMEDRYGPL 1106
Query: 736 PYSMEILLKKLYVRRMAADIGITKIYASG---KMVGMKTNMNKKV-FKMMIDSMTSEVHR 791
P ++ LL +R +A GI+ I G K+ ++ +K+V K ++ S T
Sbjct: 1107 PEEVKRLLAVARLRHLAKSAGISDIGVQGTRIKIHPVELPDSKQVRLKRLLPSATYRAAA 1166
Query: 792 NSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
++ EG + + L ++ LL W+ L+E++
Sbjct: 1167 KAIQLSFPKEGRNVTDKPLRDV---ALLQWVADFLSEMF 1202
>gi|365164153|ref|ZP_09360238.1| transcription-repair-coupling factor [Bacillus sp. 7_6_55CFAA_CT2]
gi|363613168|gb|EHL64690.1| transcription-repair-coupling factor [Bacillus sp. 7_6_55CFAA_CT2]
Length = 1121
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 438 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 494
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 495 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 550
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 551 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 609
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 610 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 668
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 669 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 728
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 729 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 788
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 789 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 848
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 849 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 908
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 909 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENIV---- 964
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 965 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1020
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1021 VGYLLQIANIKVLA 1034
>gi|383785577|ref|YP_005470147.1| transcriptionrepair coupling factor [Leptospirillum ferrooxidans
C2-3]
gi|383084490|dbj|BAM08017.1| putative transcriptionrepair coupling factor [Leptospirillum
ferrooxidans C2-3]
Length = 1121
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 253/666 (37%), Positives = 396/666 (59%), Gaps = 27/666 (4%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQA 204
+++ D L G+ VVH + GIG + G++ +++ +P E++ +EY DG +PV Q
Sbjct: 453 AFRRDQIRLAEGEPVVHLQQGIGIYRGLR-EIEV-GNIPGEFLIVEYRDGDKLYVPVDQV 510
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+L + P + P L +L + W++ +++ + I+K+ +L++LY R P
Sbjct: 511 D-LLKPWRGPEGS--PPKLDRLGGHS-WQKTRSRVRKEIEKISQELVDLYAKRKALPGFP 566
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ ++ I+EF FP++ TPDQ++A D+ D+ E TPMDRL+ G+VGFGKTEVA+RA
Sbjct: 567 FSQDSVMISEFENAFPHDLTPDQEEATRDIREDM-ESPTPMDRLVLGEVGFGKTEVAMRA 625
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V+ GKQ VL PT +L QHF+ ERFS +P ++V +SR + E+ +
Sbjct: 626 AFKAVADGKQVAVLVPTTLLCLQHFETFKERFSGFP-VRVEQISRILTAKEQRLLRQDLS 684
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GT +LLG++ ++ +LGLL++DEEQRFGV KEK+ + +VDVLTLSATPIP
Sbjct: 685 EGKIDIMIGTSALLGAQNIFRDLGLLIIDEEQRFGVGHKEKLKNKYPTVDVLTLSATPIP 744
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL ++L+G R S I TPPP R PIKT + F + ++ AI EL R GQVF++ R+
Sbjct: 745 RTLQMSLSGLRGISFIMTPPPGRKPIKTAILPFDRHRIREAIDRELARDGQVFFIHNRVS 804
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ ++ FPGV + +AHGQ S+ +E M++F G +IL+ T IVESGLDI A
Sbjct: 805 SISRMAHYISSLFPGVPVGVAHGQMDSQLMETIMDRFISGHYRILVSTAIVESGLDIPQA 864
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTII+ FG+A+LYQLRGRVGR+ +A+ Y + L++ A +RL L++ ELG
Sbjct: 865 NTIIINRSDLFGIAELYQLRGRVGRSGTQAYCYFLVAGEGGLTELAKKRLKTLQDNTELG 924
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+Q+A +D+ IRG G++ G QQTG + VG+DL+ EM+ E++ E I V ++ +
Sbjct: 925 SGYQIAMRDLEIRGAGSLLGHQQTGHISMVGLDLYMEMVEEAIQTRVEPVAIPVVRETPR 984
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAE--QDIWCLMQFTESLRRQYGKEPYSMEI 741
ID+ RLP +Y+ H P ++ + A +D+ + Q LR ++G P S
Sbjct: 985 IDLGREARLPEDYVVH---PGLRIDFYRRLAHSFKDLE-IDQIESELRDRFGPLPRSARA 1040
Query: 742 LLKKLYVRRMAADIGITKIYASGKMVGMKTNMNK--------KVFKMMIDSMTSEVHRN- 792
L+ +R M +GI+++ + + +K + K K+ + D +T HR+
Sbjct: 1041 LILGAKIRVMTTRMGISEVRLKDREIFLKPSAEKALSPRNAGKIAQAFPDRIT--FHRDG 1098
Query: 793 SLTFEG 798
S T G
Sbjct: 1099 SFTLSG 1104
>gi|206603476|gb|EDZ39956.1| Transcription-repair coupling factor [Leptospirillum sp. Group II
'5-way CG']
Length = 1154
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 244/556 (43%), Positives = 347/556 (62%), Gaps = 12/556 (2%)
Query: 147 YKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
Y+ D L G+ VVH + GIG + G+K ++ S +P E+ +EY D + KL PV A
Sbjct: 474 YRKDRPPLNEGEPVVHLQHGIGLYRGLK-EIMVGS-IPGEFFVVEYRD-LEKLYVPVDHA 530
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+L Y P E P TL ++ T W R + K + I+K+ DL++LY R
Sbjct: 531 D-LLQPYRGP-EGSTP-TLDRIGGQT-WNRTRQKVRKEIEKISQDLVDLYARRKTVSGHS 586
Query: 265 YPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ + + EF FPY+ TPDQ+ A+ V D+ E TPMDRLI GDVGFGKTE+A+RA
Sbjct: 587 FSSDLLLVREFENSFPYDLTPDQEDAWRAVCEDM-EAPTPMDRLILGDVGFGKTEIAMRA 645
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V+ G Q +L PT +LAKQH++ +RFS +P +++ +SR S+AE +
Sbjct: 646 AFKAVADGYQVALLVPTTLLAKQHYESFLDRFSGFP-VRICHISRMVSQAEIRATRKKLS 704
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GT +L+ + NLGLL++DEEQRFGV QKEK+ S SVDVLTLSATPIP
Sbjct: 705 LGEIDILIGTTALISKETSFRNLGLLIIDEEQRFGVGQKEKLKSRYTSVDVLTLSATPIP 764
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL ++L+G R S I TPPP R PI+T + F + ++ AI EL R GQVF++ R++
Sbjct: 765 RTLQMSLSGLRGISFIMTPPPGRKPIRTAILTFDRHRIHEAIDRELARDGQVFFIHNRVQ 824
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ + +L + FP V I +AHGQ ++EE MEKF Q +IL+ T IVESGLDI A
Sbjct: 825 TISRMVHYLAKLFPEVPIGMAHGQMEDSRMEEVMEKFIQRHYRILVSTAIVESGLDIPAA 884
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTIIV FG+++LYQ+RGRVGR+ ++A+AY P +S L+D A +RL L++ LG
Sbjct: 885 NTIIVNRADMFGISELYQIRGRVGRSGQQAYAYFLIPSESGLTDTARKRLKTLQDNTSLG 944
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+Q+A +DM IRG G++ G QQTG + VG+DL+ EM+ E++ E + + + V+
Sbjct: 945 SGYQIAMRDMEIRGAGSLLGHQQTGHIALVGLDLYLEMVEEAIQSRIEPEAVPLAREEVR 1004
Query: 684 IDININPRLPSEYINH 699
ID+ R P +YI H
Sbjct: 1005 IDLGRESRFPEDYIEH 1020
>gi|449086720|ref|YP_007419161.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|449020477|gb|AGE75640.1| Transcription-repair-coupling factor [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 1121
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 438 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 494
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 495 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 550
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 551 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 609
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 610 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 668
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 669 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 728
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 729 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 788
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 789 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 848
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 849 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 908
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 909 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENIV---- 964
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 965 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1020
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1021 VGYLLQIANIKVLA 1034
>gi|386740046|ref|YP_006213226.1| transcription-repair coupling factor [Corynebacterium
pseudotuberculosis 31]
gi|384476740|gb|AFH90536.1| Transcription-repair-coupling factor [Corynebacterium
pseudotuberculosis 31]
Length = 1266
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/699 (36%), Positives = 401/699 (57%), Gaps = 29/699 (4%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI--KFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
+VDP +L++GD+VVH+ GIG+F+ + + D T EY+ +EYA P Q
Sbjct: 513 RVDPLALKTGDFVVHETHGIGRFLKMTERTITSGDETSRREYIVLEYAPAKRGQPADQLF 572
Query: 206 RMLYRYNLPNE---TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
+ +L ++ ++P LSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 573 VPMDSLDLLSKYVGGEKP-ALSKMGGSD-WKNTKKKARAAVREIAGELVELYAKRQSAPG 630
Query: 263 PPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
P+ P +P E FPY T DQ A V+ D+ E+ PMDR+I GDVG+GKTEVA+
Sbjct: 631 HPFAPDSPWQYEMEDNFPYVETEDQMMAIEAVKADM-EKPVPMDRVIVGDVGYGKTEVAV 689
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F V GKQ +VL PT +LA+QH ER + +P + + LSRF S E +E +
Sbjct: 690 RAAFKAVQDGKQVVVLVPTTLLAQQHLSTFDERMAGFP-VNLRGLSRFTSTVEAKETIKG 748
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+ G ++I++GTH LL + + + NLGL++VDEEQRFGV+ KE I + + VDVLT+SATP
Sbjct: 749 LADGTVDIVIGTHRLLQTGIQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATP 808
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL +++ G R+ S I TPP +R PI T++ A +++ +AI+ EL R GQVF+V +
Sbjct: 809 IPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQIAAAIRRELLRDGQVFFVHNK 868
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
+ +E+ L++ P I +AHGQ LE+T++ F +L+CT IVE+GLDI
Sbjct: 869 VSDIEKKARDLRELVPEARIVVAHGQMSEELLEQTVQGFWDREFDVLVCTTIVETGLDIA 928
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP L++ + +RLA + + +
Sbjct: 929 NANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGQTLTENSYDRLATIAQNND 988
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISV 677
LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D V +
Sbjct: 989 LGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADGKIVDAT 1048
Query: 678 P--YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKE 735
K ++ID+ ++ +P YIN +E+ + AA Q L+ E + +YG
Sbjct: 1049 DDGPKEIRIDLPVDAHIPESYINAERLRLEVYRKL--AASQSNADLILAVEEMEDRYGPL 1106
Query: 736 PYSMEILLKKLYVRRMAADIGITKIYASG---KMVGMKTNMNKKV-FKMMIDSMTSEVHR 791
P ++ LL +R +A GI+ I G K+ ++ +K+V K ++ S T
Sbjct: 1107 PEEVKRLLAVARLRHLAKSAGISDIGVQGTRIKIHPVELPDSKQVRLKRLLPSATYRAAA 1166
Query: 792 NSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
++ EG + + L ++ LL W+ L+E++
Sbjct: 1167 KAIQLSFPKEGRNVTDKPLRDV---ALLQWVADFLSEMF 1202
>gi|325955975|ref|YP_004286585.1| transcription-repair coupling factor [Lactobacillus acidophilus 30SC]
gi|325332540|gb|ADZ06448.1| transcription-repair coupling factor [Lactobacillus acidophilus 30SC]
Length = 1164
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 238/621 (38%), Positives = 376/621 (60%), Gaps = 14/621 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG+F GIK +++ V +Y+ I Y G +P Q S ++ +Y
Sbjct: 491 LKPGDYVVHVNHGIGRFEGIK--TLENNGVKRDYITITYQHGDQLFVPADQLS-LVQKY- 546
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K P ++KL + W + K K + ++ + DL+ELY R +K + P +
Sbjct: 547 VGSEGKTPH-INKLG-GSEWAKTKRKVQSKVEDIADDLIELYAKRESEKGFAFSPDDDLQ 604
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F FPY TPDQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F +
Sbjct: 605 RQFDDAFPYPETPDQLRSIKEIKEDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIQDN 663
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + +RF +P + +LSRFQ+ AE +E ++ ++ G ++++V
Sbjct: 664 KQVAFLVPTTILAQQHYETIQDRFKDFP-VNTAMLSRFQTPAESKEIIEGLEDGKIDLVV 722
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLL+VDEEQRFGVK KEK+ K ++DVLTL+ATPIPRTL++++
Sbjct: 723 GTHRLLSKDVHFKDLGLLIVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMV 782
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ TPP R PI+T++ + A E+ RGGQVFY+ RI ++E ++
Sbjct: 783 GVRDLSVMETPPQNRYPIQTYVMEQIPSVIKDACLREMKRGGQVFYLHNRISDIDETVEK 842
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQQ P IA AHG+ QLE+ + +F IL+ T I+E+G+D+ N NT+I++D
Sbjct: 843 LQQLIPNARIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDA 902
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+ + ELG GF++A +
Sbjct: 903 DHYGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMR 962
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + +VG DL+ +ML +++ + +V + +ID+ +
Sbjct: 963 DLSIRGAGNMLGAQQHGFIDSVGYDLYSQMLSDAIK--ERKGKKTVKKSNAEIDLKLEAY 1020
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
+P YI E +E + + A+QD L + + L ++G P ++E LL ++
Sbjct: 1021 IPDSYIGDQEEKIEFYKKIKAVADQD--ELDKIEDELIDRFGDYPVAVENLLAVAGLKAA 1078
Query: 752 AADIGITKIYASGKMVGMKTN 772
A + + +G + ++ N
Sbjct: 1079 ADLAQVLTVLKTGDKIKVEFN 1099
>gi|358446415|ref|ZP_09156961.1| transcription-repair-coupling factor [Corynebacterium casei UCMA
3821]
gi|356607589|emb|CCE55285.1| transcription-repair-coupling factor [Corynebacterium casei UCMA
3821]
Length = 1223
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/637 (38%), Positives = 370/637 (58%), Gaps = 28/637 (4%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQK-DSTVPIEYVFIEYADGMAKLPVKQ-- 203
+VDP +L+ GD+VVH+ GIGKF+ + + +Q D + EY+ +EYA P Q
Sbjct: 501 RVDPLALKQGDFVVHETHGIGKFLKMAERTIQSGDESSRREYIVLEYAPSKRGQPADQLW 560
Query: 204 ----ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK 259
+ ML +Y + P LSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 561 VPMDSLDMLSKYT---GGESPH-LSKMGGSD-WKNTKKKARAAVREIAGELVELYAKR-- 613
Query: 260 QKRPPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGK 316
Q P + P P E FPY T DQ A V+ D+ E + PMDR+I GDVG+GK
Sbjct: 614 QASPGHQFPPDTPWQMEMEDNFPYVETEDQMLAIDAVKHDM-ESQVPMDRVIVGDVGYGK 672
Query: 317 TEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKE 376
TEVA+RA F V GKQ VL PT +LA+QH D ER +P I++ +LSRF S E +
Sbjct: 673 TEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHHDTFVERMGGFP-IEIRVLSRFTSTKESK 731
Query: 377 EHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLT 436
E + + G +++++GTH LL + V + NLGL+VVDEEQRFGV+ KE I + K SVDVLT
Sbjct: 732 EIIKELASGTVDVVIGTHRLLQTGVHWKNLGLIVVDEEQRFGVEHKEHIKALKASVDVLT 791
Query: 437 LSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVF 496
+SATPIPRTL +++ G R+ S I TPP +R P+ T++ A+ ++V +AI+ EL R GQ F
Sbjct: 792 MSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYEDKQVAAAIRRELLRDGQTF 851
Query: 497 YVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556
++ ++ +E+ ++ P + +AHGQ LE+T++ F +L+CT IVE+
Sbjct: 852 FIHNKVADIEKKAREIRDLVPEARVVVAHGQMNEDLLEKTVQGFWDREYDVLVCTTIVET 911
Query: 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAAL 616
GLDI NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP + L++ + +RLA +
Sbjct: 912 GLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATI 971
Query: 617 EECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS 676
+ +LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++
Sbjct: 972 AQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVSEAVDAFKALARGE 1031
Query: 677 VPY------KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRR 730
VP K ++ID+ ++ +P YIN +E+ + AA QD L E +
Sbjct: 1032 VPKATDNGPKEIRIDLPVDAHIPESYINSERLRLEVYRKL--AASQDNKDLRLAVEEMED 1089
Query: 731 QYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 767
+YG P + LL +R A GIT I G +
Sbjct: 1090 RYGPLPEEVSRLLAVSRLRHQARAAGITDITVQGTRI 1126
>gi|448236357|ref|YP_007400415.1| transcription-repair-coupling factor [Geobacillus sp. GHH01]
gi|445205199|gb|AGE20664.1| transcription-repair-coupling factor [Geobacillus sp. GHH01]
Length = 1177
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 241/612 (39%), Positives = 376/612 (61%), Gaps = 25/612 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIGK++GI + + + V +Y+ I+Y G +PV Q ++ +
Sbjct: 500 LQVGDYVVHVNHGIGKYLGI--ETLEINGVHKDYIHIQYQGGDTLYVPVDQIDQV--QKY 555
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K P+ + KL + W++ K K + ++Q + DL++LY R K + P
Sbjct: 556 VGSEGKEPK-IYKLGGSE-WKKVKRKVESSVQDIAEDLIKLYAEREASKGYAFSPDTEMQ 613
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A FPY+ T DQ ++ +++RD+ E + PMDRL+CGDVG+GKTEVALRA F + G
Sbjct: 614 REFEAAFPYQETEDQLRSIEEIKRDM-ESDKPMDRLLCGDVGYGKTEVALRAAFKAIMDG 672
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ V ERF +P IKVGLL+RF++K ++ E + +K G +++++
Sbjct: 673 KQVAFLVPTTILAQQHYETVRERFQGFP-IKVGLLNRFRTKKQQAETIKGLKDGTIDMVI 731
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIPRTL++++
Sbjct: 732 GTHRLLSKDVKFKDLGLLIIDEEQRFGVAHKEKIKQLKANIDVLTLTATPIPRTLHMSMI 791
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T++ ++ E V AI+ EL R GQVF++ I+ ++ +
Sbjct: 792 GVRDLSIIETPPENRFPVQTYVMEYTPELVKEAIERELARDGQVFFLYNHIEDIDLKAEE 851
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+ Q P + HG+ +LE T+ F +G +L+ T I+E+G+DI N NT+IV D
Sbjct: 852 IAQLVPEARVTYVHGRMSETELESTILAFLEGQYDVLVTTTIIETGIDIPNVNTLIVYDA 911
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +
Sbjct: 912 DRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNEAAEKRLQAIKEFTELGSGFKIAMR 971
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV------DEHCVISVPYKSVQID 685
D+ IRG G I G +Q G + +VG DL+ +ML E++ K DE V ID
Sbjct: 972 DLSIRGAGNILGAEQHGFIDSVGFDLYSQMLKEAIEKRRGIKREDEQ-------PDVVID 1024
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ ++ +PS YI +EM + A + + + + E + ++G P + L +
Sbjct: 1025 VEVDAYIPSTYIADELQKIEMYKRFK--AVETLEDIEELREEMVDRFGDYPDEVAYLFQI 1082
Query: 746 LYVRRMAADIGI 757
++ +A +G+
Sbjct: 1083 AELKVLAKQLGV 1094
>gi|421119256|ref|ZP_15579580.1| transcription-repair coupling factor [Leptospira interrogans str.
Brem 329]
gi|410347886|gb|EKO98737.1| transcription-repair coupling factor [Leptospira interrogans str.
Brem 329]
Length = 1186
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 247/623 (39%), Positives = 391/623 (62%), Gaps = 21/623 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRMLYRYN 212
L+ GDYVVH G+GKF +K + +++ +EY+ G + +P+ Q S ++ RY
Sbjct: 520 LKEGDYVVHIHHGVGKF--LKIERTSAGGKERDFLKLEYSGGDSLFVPLDQIS-LVQRYI 576
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E+ R +L K + W++ K + + A++ + DL+++Y +RLK + +P +
Sbjct: 577 GGTESPRLDSLGK----STWKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQ 632
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG
Sbjct: 633 EEFEAEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAG 691
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
+Q M+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++V
Sbjct: 692 RQIMMLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVV 750
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH++L S++ NLGLL++DEEQRFGV KE I FK +DVLTL+ATPIPRTL++ALT
Sbjct: 751 GTHAILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLMDVLTLTATPIPRTLHMALT 810
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G R+ S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++
Sbjct: 811 GIRELSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNY 870
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L + P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+
Sbjct: 871 LSKLVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRA 930
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +
Sbjct: 931 DLFGLSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMR 990
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININP 690
D+ IRG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N
Sbjct: 991 DLEIRGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNF 1047
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYV 748
+P YI+ +E + E A +D+ + + + ++G+ P + ILL+K +
Sbjct: 1048 FIPETYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--I 1103
Query: 749 RRMAADIGITKIYASGKMVGMKT 771
R +A+++G + + MK+
Sbjct: 1104 RTLASNLGFEFVTEMKDEIKMKS 1126
>gi|423399627|ref|ZP_17376800.1| transcription-repair coupling factor [Bacillus cereus BAG2X1-2]
gi|401658233|gb|EJS75730.1| transcription-repair coupling factor [Bacillus cereus BAG2X1-2]
Length = 1176
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/614 (39%), Positives = 382/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|39995128|ref|NP_951079.1| transcription-repair coupling factor [Geobacter sulfurreducens PCA]
gi|409910602|ref|YP_006889067.1| transcription-repair coupling factor [Geobacter sulfurreducens KN400]
gi|39981890|gb|AAR33352.1| transcription-repair coupling factor [Geobacter sulfurreducens PCA]
gi|298504158|gb|ADI82881.1| transcription-repair coupling factor [Geobacter sulfurreducens KN400]
Length = 1157
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 263/686 (38%), Positives = 391/686 (56%), Gaps = 54/686 (7%)
Query: 22 RLWGWTS-----LFTAHKQAKKKQSFQFKAVYTPGLSLSSPTSKKPTQRREKNENETDD- 75
RL GW + H++ + ++ ++ A Y L++S R E E DD
Sbjct: 392 RLTGWIEERQRVIIACHQRGQAQRLYELLAHYPVPLTVSD--------RPFPAERERDDG 443
Query: 76 -ISILNERIRRDFGKREATRPVMDSEEADKYIQLVKEQQQKGLQKLKGKKSGGGGAGAGA 134
+ I+ I R F E V+ EE K Q+++G+ +L+ K+ A
Sbjct: 444 RVDIVIGEISRGFRLPEGRLVVIAEEEI-----FGKRQKRRGITELRKKQIMTSLA---- 494
Query: 135 GDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYAD 194
L+ GD++VH G+G + G++ S +++ +EYA
Sbjct: 495 ------------------ELKPGDHMVHLDHGVGIYRGLQH--LSLSGCAGDFLLLEYAG 534
Query: 195 G-MAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMEL 253
G LPV + S ++ RY + +E PR + +L T+ WE+ K K + A+Q+M +L+ +
Sbjct: 535 GDKLYLPVDRLS-LVQRY-VGSEGIEPR-VDRLGGTS-WEKAKGKARAAVQEMAEELLRI 590
Query: 254 YLHR-LKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDV 312
Y R L + P + EF A F YE T DQ A DV D+T PMDRL+CGDV
Sbjct: 591 YAARQLHEGHRFSPPDDLYREFEASFAYEETSDQLAAIEDVIADMTSNR-PMDRLVCGDV 649
Query: 313 GFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSK 372
G+GKTEVA+R F V GKQ VL PT VLA+QH + R YP + + ++SRF++
Sbjct: 650 GYGKTEVAMRGAFKAVMDGKQVAVLVPTTVLAQQHLETFRARLGAYP-VTIEMVSRFRTP 708
Query: 373 AEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISV 432
E+++ L+ +K G +++I+GTH LL + V + +LGLL+VDEEQRFGV KEK+ +K +V
Sbjct: 709 KEQKDILERVKKGTVDVIIGTHRLLQNDVTFKDLGLLIVDEEQRFGVTHKEKLKKYKAAV 768
Query: 433 DVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRG 492
D+LTL+ATPIPRTLY++L G RD S+I TPP +RL +KT ++ S E + A+ EL RG
Sbjct: 769 DILTLTATPIPRTLYMSLMGIRDLSIIDTPPVDRLAVKTFVARTSDELIREAVLRELRRG 828
Query: 493 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN 552
GQVF+V R++ + + L++ P IA+ HGQ +LE+ M F G +L+CT
Sbjct: 829 GQVFFVHNRVQSIGAWYEHLRRIVPEAKIAVGHGQMDEGELEKVMLGFMHGETNLLLCTT 888
Query: 553 IVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALER 612
I+ESGLDI +ANT+IV FGLAQLYQLRGRVGR+ + A+AYL P + +S A ER
Sbjct: 889 IIESGLDIPSANTLIVDRADTFGLAQLYQLRGRVGRSRQRAYAYLLIPGEGAISSDARER 948
Query: 613 LAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEH 672
L ++E ELG GF+LA D+ IRG G + G +Q+G++ VG DL+ E+L E++ K+
Sbjct: 949 LRIIQELNELGAGFRLATHDLEIRGAGDLLGAKQSGNIAAVGFDLYTELLEEAVQKL--K 1006
Query: 673 CVISVPYKSVQIDININPRLPSEYIN 698
V +I++ + +P +Y+
Sbjct: 1007 GEEPVERVEPEINLRVPAFIPEDYVR 1032
>gi|423613680|ref|ZP_17589540.1| transcription-repair coupling factor [Bacillus cereus VD107]
gi|401241369|gb|EJR47760.1| transcription-repair coupling factor [Bacillus cereus VD107]
Length = 1176
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/614 (39%), Positives = 383/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|284046682|ref|YP_003397022.1| transcription-repair coupling factor [Conexibacter woesei DSM 14684]
gi|283950903|gb|ADB53647.1| transcription-repair coupling factor [Conexibacter woesei DSM 14684]
Length = 1112
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/632 (38%), Positives = 378/632 (59%), Gaps = 15/632 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK--LPVKQASRMLYRY 211
LR+GD VVH+ G+ +F G FD + + V +Y+ +EYA G K +PV Q ++ + RY
Sbjct: 446 LRTGDIVVHEDHGLARFAG--FDTKTVAGVTRDYLNLEYA-GSDKVFMPVDQFAK-ISRY 501
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA- 270
P LSKL W+ K + + A Q+M +L+ LY R ++ +P +
Sbjct: 502 VGAGGDHPP--LSKLGGRR-WDTLKARARRAAQEMAGELLNLYAERKRRAGHAFPPDSDW 558
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+ EF +PY TPDQ++A V+ D+ E PMDRLICGDVG+GKTEVALRA F +
Sbjct: 559 MREFEDAWPYRETPDQREAIEQVKTDM-ETARPMDRLICGDVGYGKTEVALRAAFKAAND 617
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
G+Q MVL PT +LA+QH+ +ER YP + +SRF+ AE+ + G ++I+
Sbjct: 618 GRQVMVLVPTTILAQQHYGTFAERLKDYP-FTIEHVSRFRPAAEQRAAIRAFTEGSVDIL 676
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH LL V +LGLL+VDEEQRFGVKQKE + K+ VDV+ +SATPIPRTL +++
Sbjct: 677 IGTHRLLSRDVRPRDLGLLIVDEEQRFGVKQKELLRQLKLKVDVIAMSATPIPRTLQMSI 736
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+I TPP R P+KT++ + ++ V SAI+ E RGGQ F++ R++ ++E +
Sbjct: 737 AGIRDISVIETPPEGRRPVKTYVGEYDEQLVKSAIERERSRGGQAFFLHNRVETIDETAE 796
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L+ P +AHGQ + LEE M +F +G +L+ T+I+ESG+DI ANT++V+
Sbjct: 797 RLRALCPEARFEVAHGQLDEKTLEERMLRFLRGEADVLVATSIIESGIDIPQANTLMVER 856
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+QLYQ+RGRVGR+ + A+AYL YP S L+ A +RL+AL + ELG GF++A
Sbjct: 857 ADLFGLSQLYQIRGRVGRSRERAYAYLLYPSASALTADAAQRLSALSDYTELGAGFKVAM 916
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G++Q+G V +G +L+ +ML E++ ++ + V++D+N++
Sbjct: 917 RDLEIRGAGNLLGDEQSGHVAALGFELYMQMLDEAVQEMGGEDGTEELAEPVRLDVNVDA 976
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+P +YI + + +++ A +++ L + L ++G+ P + LL R
Sbjct: 977 YVPVDYIPYEQAKIDVHRRI--AGAREVSELHELRSELADRFGEPPEPLRNLLLLQQARI 1034
Query: 751 MAADIGITKI-YASGKMVGMKTNMNKKVFKMM 781
+ G + + G++ ++ + K M
Sbjct: 1035 KLGEAGARAVSFRGGRLAVTPIELDSRRAKRM 1066
>gi|160939694|ref|ZP_02087042.1| hypothetical protein CLOBOL_04586 [Clostridium bolteae ATCC BAA-613]
gi|158437485|gb|EDP15249.1| hypothetical protein CLOBOL_04586 [Clostridium bolteae ATCC BAA-613]
Length = 1200
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 250/650 (38%), Positives = 394/650 (60%), Gaps = 24/650 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRM--LYR 210
L GDYVVH++ G+G + GI+ V++D + +Y+ IEY DG LP A+R+ + +
Sbjct: 529 LSVGDYVVHEEHGLGIYKGIE-KVERDKVIK-DYIKIEYGDGGNLYLP---ATRLESIQK 583
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA 270
Y E K+P+ L+KL T W + KT+ + A+Q++ DL++LY R ++ Y +
Sbjct: 584 YA-GAEAKKPK-LNKLG-GTEWNKTKTRVRGAVQEIARDLVKLYAARQEKAGFQYGTDTV 640
Query: 271 IA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF FPY+ T DQ A V++D+ R MDRLICGDVG+GKTEVALRA F V
Sbjct: 641 WQREFEELFPYDETDDQMDAIDAVKKDMESRRI-MDRLICGDVGYGKTEVALRAAFKAVQ 699
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
KQ + L PT +LA+QH++ +R +P ++V +LSRF + A ++ L+ ++ G ++I
Sbjct: 700 DSKQVVYLVPTTILAQQHYNTFVQRMKDFP-VRVDMLSRFCTPARQKRTLEDLRKGMVDI 758
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH +L + + +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL+++
Sbjct: 759 VIGTHRVLSKDMQFKDLGLLIIDEEQRFGVAHKEKIKHLKENVDVLTLTATPIPRTLHMS 818
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
L G RD S++ PP +R PI+T++ +++E V AI EL R GQV+YV R+ ++E
Sbjct: 819 LAGIRDMSVLEEPPVDRTPIQTYVMEYNEEMVREAINRELARNGQVYYVYNRVTDIDEVA 878
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+Q P + AHGQ +LE M F G I +L+ T I+E+GLDI NANT+I+
Sbjct: 879 GRVQALVPDAVVTFAHGQMREHELERIMADFINGEIDVLVSTTIIETGLDISNANTMIIH 938
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GL+QLYQLRGRVGR+++ ++A+L Y LL ++A +RL A+ E ELG G ++A
Sbjct: 939 DADRMGLSQLYQLRGRVGRSNRTSYAFLMYKRDKLLREEAEKRLQAIREFTELGSGIKIA 998
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G + G +Q G + VG DL+ +ML +++ + + Y +V ++ +I+
Sbjct: 999 MRDLEIRGAGNVLGAEQHGHMEAVGYDLYCKMLNQAVLALKGETLEEDSYDTV-VECDID 1057
Query: 690 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+P YI + +++ ++ + MQ + L ++G P S+E LLK +R
Sbjct: 1058 AYIPGRYIKNEYQKLDIYKRISAIETEEEYMDMQ--DELMDRFGDIPRSVENLLKIASIR 1115
Query: 750 RMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGD 799
+A +T++ + + V + M +K K+ +D + V +++GD
Sbjct: 1116 ALAHQAYVTEVVINRQEV--RLTMYQKA-KLQVDKIPDMVR----SYKGD 1158
>gi|253580889|ref|ZP_04858151.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847731|gb|EES75699.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 1107
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 251/659 (38%), Positives = 393/659 (59%), Gaps = 26/659 (3%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMA-KLPVKQASRML 208
D L GD+VVH+K G+G + GI+ V+ D V +Y+ IEY G +P Q L
Sbjct: 437 DFAELSVGDFVVHEKHGLGIYRGIE-KVEVDRIVK-DYIKIEYRGGSNLYIPATQLD-CL 493
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
+Y+ + +K P+ L+KL T W + K+K + A++ + +L+ELY ++Q++ Y
Sbjct: 494 QKYSGADASKAPK-LNKLG-TQEWNKTKSKVRGAVKNIAKELVELYA--VRQEKEGYVCG 549
Query: 269 PAIA---EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
P EF FPYE T DQ A D +RD+ E MDRLICGDVG+GKTEVALRA F
Sbjct: 550 PDTVWQREFEEMFPYEETEDQLSAIEDAKRDM-ESTRIMDRLICGDVGYGKTEVALRAAF 608
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
V +Q LAPT +LA+Q ++ +R ++P ++V LL RF++ A++++ ++ +K G
Sbjct: 609 KEVQESRQVAYLAPTTILAQQIYNTFVQRMKEFP-VRVELLCRFRTPAQQKKAIEDLKKG 667
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
+++I+GTH +L V + NLGLL+VDEEQRFGV KEKI K VDVLTL+ATPIPRT
Sbjct: 668 QVDVIIGTHRILSKDVQFKNLGLLIVDEEQRFGVTHKEKIKQLKKDVDVLTLTATPIPRT 727
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L+++L G RD S++ PP +R+PI+T++ + +E V AI EL RGGQV+YV R+ +
Sbjct: 728 LHMSLIGIRDMSVLEEPPMDRMPIQTYVMEYDEETVREAINRELRRGGQVYYVYNRVTDI 787
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
+ + + P + AHGQ R+LE M F G I +L+ T I+E+GLDI N NT
Sbjct: 788 ADVALRIAKLVPDARVDFAHGQMSERELENVMYSFVNGDIDVLVSTTIIETGLDISNVNT 847
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
+I+ D ++GL+QLYQLRGR+GR+++ A+A+L Y +L + A +RLAA+ E +LG G
Sbjct: 848 MIIHDSDRYGLSQLYQLRGRIGRSNRTAYAFLMYRKNVMLKETAEKRLAAIREYTDLGSG 907
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
F++A +D+ +RG G + G QQ G + VG DL+ +ML E++ + + ++ +D
Sbjct: 908 FKIAMRDLELRGAGNLLGAQQHGHMNAVGYDLYCKMLNEAVKEA--KGIHTMEDFETSVD 965
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+N++ +P YI++ +++ Q + M E L ++G+ ++ LL
Sbjct: 966 LNVDAYIPDSYISNEFQKLDIYKRIAGIETQQDYDDM--LEELLDRFGEPGKAVLNLLAI 1023
Query: 746 LYVRRMAADIGITKIYASGKMVGM----KTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 800
++ +A +T+I +GK+V K +N + F ++ +R L F+ +Q
Sbjct: 1024 AKLKAIAHQGYVTEIKQTGKIVRFTLYEKARLNTEGFPALMQK-----YRRGLQFKNEQ 1077
>gi|311028986|ref|ZP_07707076.1| transcription-repair coupling factor [Bacillus sp. m3-13]
gi|311032274|ref|ZP_07710364.1| transcription-repair coupling factor [Bacillus sp. m3-13]
Length = 1178
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 231/595 (38%), Positives = 374/595 (62%), Gaps = 17/595 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYR 210
L GDYVVH GIGK++GI+ D+ + + +Y+ I+Y G KL PV+Q + + +
Sbjct: 500 LNVGDYVVHINHGIGKYLGIETLDI---NGLHKDYIHIKY-QGSDKLYVPVEQIDQ-VQK 554
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNP 269
Y + +E K P+ + KL T W++ K K + ++Q + DL++LY R + P
Sbjct: 555 Y-VGSEGKEPK-VYKLGGTD-WKKVKNKVESSVQDIADDLIKLYAEREASVGHAFSPDGE 611
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
EF A FPY+ T DQ ++ +++ D+ E+ PMDRL+CGDVG+GKTEVA+RA F ++
Sbjct: 612 MQREFEATFPYQETEDQLRSIHEIKLDM-EKTRPMDRLLCGDVGYGKTEVAIRAAFKAIT 670
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF+S+ ++ E + + +G ++I
Sbjct: 671 DGKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRSRKQQTETMKGLGNGTVDI 729
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
+VGTH LL + Y +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIPRTL+++
Sbjct: 730 VVGTHRLLSKDIKYKDLGLLIIDEEQRFGVTHKEKIKQLKANIDVLTLTATPIPRTLHMS 789
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
+ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQ++++ R++ +E
Sbjct: 790 MLGVRDLSVIETPPENRFPVQTYVMEYNGNLVKEAIERELARGGQIYFLYNRVEDIERKA 849
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
D + P + AHG+ +LE M +F +G ++L+ T I+E+G+DI N NT+IV
Sbjct: 850 DEISMLVPEARVTYAHGKMTENELESVMIQFLEGEAEVLVSTTIIETGVDIPNVNTLIVF 909
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL +++E ELG GF++A
Sbjct: 910 DADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQSIKEFTELGSGFKIA 969
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G + G QQ G + +VG D++ +ML E++ + + + + ID+ ++
Sbjct: 970 MRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLKEAIEQ-RQGAKNAKKAHEISIDVELD 1028
Query: 690 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
+P YI + ++M ++ L++ + ++ ++G P ++ L +
Sbjct: 1029 AYIPESYIPDSKQKIDMYKRFRGLESKE--DLLELQDEMKDRFGNYPKEVDYLFQ 1081
>gi|261367666|ref|ZP_05980549.1| transcription-repair coupling factor [Subdoligranulum variabile DSM
15176]
gi|282570458|gb|EFB75993.1| transcription-repair coupling factor [Subdoligranulum variabile DSM
15176]
Length = 1153
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 245/611 (40%), Positives = 367/611 (60%), Gaps = 22/611 (3%)
Query: 157 GDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRMLYRYNLP 214
GD VVH+ GIG++ GI + VQ V +Y+ IEY + +PV Q +L RY P
Sbjct: 489 GDLVVHQNHGIGRYAGIQRMAVQG---VTKDYLRIEYDKKDVLYVPVTQLD-LLSRYTAP 544
Query: 215 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI-AE 273
+ + LS+L + W + + K + A + M +L+ELY R + K +P + +
Sbjct: 545 GDKDNVK-LSRLGGSD-WAKTRKKVRAATEAMAKELIELYARRKQAKGYAFPADDTWQGD 602
Query: 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 333
F +F YE TPDQ D++ D+ E+ PMDRL+CGDVG GKTEVALRA F V GKQ
Sbjct: 603 FEQRFAYEETPDQLTCAADIKHDM-EQPWPMDRLLCGDVGVGKTEVALRAAFKCVMGGKQ 661
Query: 334 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 393
+LAPT +LA QHF+ R YP I++GLLSR++S E++E L +K G ++I+VGT
Sbjct: 662 CAILAPTTILAWQHFNTAIARMEAYP-IRIGLLSRYRSSKEQKETLRGLKDGTVDIVVGT 720
Query: 394 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF 453
H LL V + +LGL+++DEEQRFGVK KEK+ I VD+LTLSATPIPRTL +AL+G
Sbjct: 721 HRLLSDDVKFRDLGLVIIDEEQRFGVKHKEKLKEAFIGVDMLTLSATPIPRTLNMALSGI 780
Query: 454 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQ 513
RD S I PP ER P++T++ + + V AI+ EL RGGQV+Y+ R+ + E +
Sbjct: 781 RDMSTIEQPPFERQPVETYVLEYDEGIVSEAIRKELARGGQVYYLHNRVDTINECAARIG 840
Query: 514 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 573
+ PG + IAHG+ Q+ ++ I +L+CT ++E+G+D++N NT+I+++ +
Sbjct: 841 KMVPGARVGIAHGKMTEEQISSVWQQLLDNEIDVLVCTTLIETGVDVRNCNTLIIENADR 900
Query: 574 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDM 633
GL+QLYQLRGRVGR+ ++A+AY + +L++ A +RL+A+ E G GF++A +D+
Sbjct: 901 MGLSQLYQLRGRVGRSSRKAYAYFTFTRDKVLTEVAAKRLSAIREFTAFGSGFRIAMRDL 960
Query: 634 GIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS-VQIDININPRL 692
IRG G++ G Q G + VG DL+ +ML ++++ P KS +DI+I+ L
Sbjct: 961 QIRGAGSLLGHSQHGHMEAVGYDLYVKMLGQAIATARGE--TPPPDKSDCLVDISIDAYL 1018
Query: 693 PSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
P +YI +E + E A+ + + L +YG P S++ L+ VR
Sbjct: 1019 PEDYIPDPAGRIEAYKRIAAIETTADAE-----DVLDELIDRYGSPPKSVQGLVDVSLVR 1073
Query: 750 RMAADIGITKI 760
AA +GI +I
Sbjct: 1074 VTAARVGIVEI 1084
>gi|254724194|ref|ZP_05185979.1| transcription-repair coupling factor [Bacillus anthracis str. A1055]
Length = 1176
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 382/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL+ DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLISDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|169824178|ref|YP_001691789.1| transcription-repair coupling factor [Finegoldia magna ATCC 29328]
gi|167830983|dbj|BAG07899.1| transcription-repair coupling factor [Finegoldia magna ATCC 29328]
Length = 1168
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 238/616 (38%), Positives = 385/616 (62%), Gaps = 16/616 (2%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASR 206
V+ L DYVVH+ GIG++ GI K DV + + +Y+ I+Y A+ +P Q +
Sbjct: 497 VNYSDLNIDDYVVHENHGIGQYKGIEKIDV---NGIQKDYIVIQYKANDRLMIPTDQMN- 552
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP 266
++ +Y K+P +L+KLS W + K K K ++ +M DL+ELY R K K +
Sbjct: 553 LVQKYIGGGNVKKP-SLNKLS-GNDWAKAKQKAKKSVDEMADDLVELYSKRAKLKGYQFS 610
Query: 267 KNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
++ EF FPYE T Q ++ +++ D+ E + PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 611 QDTEWQREFEDSFPYEETDSQVRSIEEIKADM-ESDRPMDRLLCGDVGYGKTEVAIRACF 669
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
+ GKQ L PT +LA+QHF+ + ERF YP I+V ++SRF S A +++ + ++ G
Sbjct: 670 KAIMDGKQVAFLVPTTILAQQHFNTIKERFRDYP-IRVEMMSRFVSPARQKQIMKDVQRG 728
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++++VGTH +L + + +LGLLV+DEEQRFGV+ KEK+ S + +VDVLTLSATPIPRT
Sbjct: 729 LVDLLVGTHRILSKNLKFKDLGLLVIDEEQRFGVRHKEKLKSMRENVDVLTLSATPIPRT 788
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L + LTG RD SL+ PP +R PI T+++ ++ + AI ELDRGGQ+++V RI+ +
Sbjct: 789 LQMGLTGIRDMSLLEEPPEDRTPISTYVTEYNPSLIRDAIIRELDRGGQIYFVYNRIEDI 848
Query: 506 EEPMDF-LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
++ M+F L++ P ++IAIAHG+ ++LE M F G +L+CT I+E+GLDIQN N
Sbjct: 849 DQ-MEFKLKELVPELNIAIAHGRMNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVN 907
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+I+ + + GL+QLYQL+GR+GR+D+ + AY Y + L++ + +RL A+++ E G
Sbjct: 908 TMIIYNADKMGLSQLYQLKGRIGRSDRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFGS 967
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ +RG G + GE Q G + +G DL+ ++L +++ + IS +V I
Sbjct: 968 GFKIAMRDLELRGAGNLLGESQHGHIAKIGYDLYVKLLEQAVREAKGET-ISENKNTVII 1026
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
+I +N +P +YI+ E +++ + ++D + + + L ++G P + ++
Sbjct: 1027 EIKVNGYIPEDYISENETKIDIYKKIASIQDEDDYS--EIIDELIDRFGDVPKPIVNIMD 1084
Query: 745 KLYVRRMAADIGITKI 760
++ A + I I
Sbjct: 1085 VSIIKAFCARLSIESI 1100
>gi|226227554|ref|YP_002761660.1| transcription-repair coupling factor [Gemmatimonas aurantiaca T-27]
gi|226090745|dbj|BAH39190.1| transcription-repair coupling factor [Gemmatimonas aurantiaca T-27]
Length = 1104
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/613 (39%), Positives = 368/613 (60%), Gaps = 16/613 (2%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLP---VKQASRML 208
+L+ GDYVVH + GIG + GI+ ++ST IE IEY G +P + Q R
Sbjct: 437 ALKPGDYVVHLEHGIGIYRGIEKIFVREST--IESAVIEYEGGDRLNVPLYRIDQIERYR 494
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
+++ ++ PR L KL W+ ++ K ++AI +M +L+ELY R RPP+ +
Sbjct: 495 SAHDVSDDAPAPR-LHKLGGNK-WKAQREKTRMAILEMTQELLELYARRKVTTRPPHGAD 552
Query: 269 PAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
A + + F +E TPDQ+KA DV+RDL E E PMDRL+ GDVG+GKTE+A+RA F
Sbjct: 553 GAWQRQLESSFLFEDTPDQRKATEDVKRDL-EGERPMDRLLVGDVGYGKTEIAIRAAFKA 611
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V G+Q VL PT +LA+QH +R + +P + V ++SRFQ+ +++ ++ +K +
Sbjct: 612 VQGGRQVAVLVPTTILAEQHARSFGDRLADFP-VTVEVMSRFQTASQQAVVVEKLKKKQV 670
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH LL V + +LGL++VDEE RFGVK KE++ K+S DVLTL+ATPIPRTL+
Sbjct: 671 DIVIGTHRLLSPDVAFGDLGLIIVDEEHRFGVKHKERLKQLKLSTDVLTLTATPIPRTLH 730
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+L G RD +L+ T P +R P+ T + F + AI ELDRGGQVF+V RI+ +E
Sbjct: 731 QSLAGLRDLTLMQTAPRDRSPVLTFVEPFDDALIEEAISRELDRGGQVFFVHNRIETIEA 790
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
D L++ P +A+ HGQ R+LE+ M +F +G + IL+ T IVESGLD+ NANT+
Sbjct: 791 IADHLRRIVPRARVAVGHGQMKERELEKVMRQFVEGEVDILVSTLIVESGLDVPNANTMF 850
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
V GLAQLYQLRGRVGR+ + A+ +L PD+ + + A RLA LE ELG G++
Sbjct: 851 VNRADHLGLAQLYQLRGRVGRSHRRAYCFLLVPDR--VDEDAERRLAVLEHHTELGAGYR 908
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDIN 687
+A KD+ +RG G + G +Q+G V VG DL+ +L E++ + + P+ ++++
Sbjct: 909 VALKDLELRGAGNLLGPEQSGFVHAVGFDLYLRLLDETVRLLADGGG-QKPWIPADVNLD 967
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
LP EYI E +++ A +D+ + +R ++G P + + L
Sbjct: 968 FPAYLPDEYIISQEAKLDVYRRL--TAMRDVAAIEALKREVRDRFGALPPAADALFGSAV 1025
Query: 748 VRRMAADIGITKI 760
+R + A + + +
Sbjct: 1026 LRVLGAMLSVDGV 1038
>gi|55980858|ref|YP_144155.1| transcription-repair coupling factor [Thermus thermophilus HB8]
gi|55772271|dbj|BAD70712.1| transcription-repair coupling factor [Thermus thermophilus HB8]
Length = 978
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/615 (41%), Positives = 364/615 (59%), Gaps = 20/615 (3%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRML 208
DP +L GDY++H + G+G+++G+ + ++ V +Y+ + Y +G LPV+Q +L
Sbjct: 315 DPGALSPGDYLIHPEHGVGQYLGL--ETREVLGVKRDYLVLRYKGEGKLYLPVEQLP-LL 371
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK---QKRPPY 265
R+ P T P LS L W+R K + + ++++ L+ L R + PP
Sbjct: 372 KRH--PGTTDDPPELSSLGKNE-WQRAKERARKDVEELAGRLLVLQAKRKATPGRAFPPL 428
Query: 266 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
P+ + E FPYE TPDQK+A +V RDL E PMDRL+ GDVGFGKTEVALRA
Sbjct: 429 PEWDPLVE--KGFPYELTPDQKRALEEVLRDL-ESPHPMDRLVSGDVGFGKTEVALRAAH 485
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
VV G Q L PT +LA+QH ERF P ++V +LSRF E+E L + G
Sbjct: 486 RVVGHGAQVAFLVPTTLLAEQHGKTFRERFQGLP-VRVAVLSRFTPPKEEEAILKGLAEG 544
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++I++GTH LL V + +LGLL+VDEE RFGV QKE+I K VD L LSATPIPRT
Sbjct: 545 TVDIVIGTHRLLQEDVRFRDLGLLIVDEEHRFGVAQKERIRELKAEVDTLYLSATPIPRT 604
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
LY AL G +D S I TPPP R PIKT L+ F V AI +EL+RGG+VFYV R+ +
Sbjct: 605 LYSALVGLKDLSSIQTPPPGRKPIKTFLAPFDPLLVREAILFELERGGKVFYVHDRVASI 664
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
E FL+ P I + HGQ +EETM FA+GA +L+ T I+E+GLD+ ANT
Sbjct: 665 EARRRFLENLVPEARIGVVHGQMPESLIEETMLLFAEGAYDVLLATTIIEAGLDVPEANT 724
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
I+++ + GLA LYQLRGRVGR ++EA+AYLF+P + L++ A +RLAA+ + +LG G
Sbjct: 725 ILIERADRLGLATLYQLRGRVGRREEEAYAYLFHPPR--LTEAAEKRLAAIADLSDLGSG 782
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
LAE+DM IRG G + G +Q G + + ++++ E+L E++ K+ + V +D
Sbjct: 783 HLLAERDMEIRGVGNLLGPEQHGHIRALSLEVYTELLEEAIRKLKGEA--KEERRHVTLD 840
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ ++ RLP+EY+ LE + +A + + L + L+ +YG P E +
Sbjct: 841 LALSARLPAEYVGSLEARSRYYSRFAEA--KSLAELSRLVRELKERYGPLPEEAENFVAL 898
Query: 746 LYVRRMAADIGITKI 760
+R +A G+ I
Sbjct: 899 ARLRLVAERKGVVSI 913
>gi|294792288|ref|ZP_06757436.1| transcription-repair coupling factor [Veillonella sp. 6_1_27]
gi|294457518|gb|EFG25880.1| transcription-repair coupling factor [Veillonella sp. 6_1_27]
Length = 1098
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 246/546 (45%), Positives = 354/546 (64%), Gaps = 22/546 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYRY 211
L GDYVVH GIGK++G+K + + +Y+ I YA G KL P + L +Y
Sbjct: 425 LTPGDYVVHNMHGIGKYIGLK--TIETEGIHRDYIEIAYA-GTDKLFLPANNLDQ-LQKY 480
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPA 270
+ NE PR ++K+ W + TK K +I + L+E+Y R + + P P
Sbjct: 481 -IGNEGDVPR-INKMGGRD-WSKVVTKAKKSIDDLADKLVEIYAQREITEGFAFLPDQPW 537
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF FPYE T DQ +A +++ + ER PMDRL+ GDVGFGKTEVA+RAIF V +
Sbjct: 538 QQEFEDAFPYEETEDQLQATAEIKESM-ERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMS 596
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ VL PT VLA+QHF RF+ + +KV +L+RF++ +EK++ L ++ G ++++
Sbjct: 597 GKQVAVLVPTTVLAQQHFQTFLNRFAPF-GVKVDVLNRFRTTSEKKQILKGVEDGSIDVL 655
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTHSLL +VV+ +LG+LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++L
Sbjct: 656 IGTHSLLNKKVVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSL 715
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G R+ S+I+TPP ERLP++T++ + + AIK EL RGGQV++V R+ + +
Sbjct: 716 VGVREMSVINTPPEERLPVQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGE 775
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L+ A PG+ A+AHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+ D
Sbjct: 776 LLESALPGLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYD 835
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLA 629
+ GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+LA
Sbjct: 836 ADRLGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-ILSEAAEKRLKAIEEFTELGAGFKLA 894
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G + G QQ G++ +VG ++ ML E+++K K V+ D++I+
Sbjct: 895 MRDLEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQN--------KEVERDVSID 946
Query: 690 PRLPSE 695
P + E
Sbjct: 947 PAIDLE 952
>gi|297587541|ref|ZP_06946185.1| transcription-repair coupling factor [Finegoldia magna ATCC 53516]
gi|297574230|gb|EFH92950.1| transcription-repair coupling factor [Finegoldia magna ATCC 53516]
Length = 1168
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 237/616 (38%), Positives = 385/616 (62%), Gaps = 16/616 (2%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASR 206
V+ L D+VVH+ GIG++ GI K DV + + +Y+ I+Y A+ +P Q +
Sbjct: 497 VNYSDLNIDDFVVHENHGIGQYKGIEKIDV---NGIQKDYIVIQYKANDRLMIPTDQMN- 552
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP 266
++ +Y K+P +L+KLS W + K K K ++ +M DL+ELY R K K +
Sbjct: 553 LVQKYIGGGNIKKP-SLNKLS-GNDWAKAKQKAKKSVDEMADDLVELYSKRAKLKGYQFS 610
Query: 267 KNPAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
++ EF FPYE T Q ++ +++ D+ E + PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 611 QDTEWQREFEDSFPYEETDSQVRSIEEIKTDM-ESDRPMDRLLCGDVGYGKTEVAIRACF 669
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
+ GKQ L PT +LA+QHF+ + ERF YP I+V ++SRF S A +++ + ++ G
Sbjct: 670 KAIMDGKQVAFLVPTTILAQQHFNTIKERFRDYP-IRVEMMSRFVSPARQKQIMKDVQRG 728
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++++VGTH +L + + +LGLLV+DEEQRFGV+ KEK+ S + +VDVLTLSATPIPRT
Sbjct: 729 LVDLLVGTHRILSKNLKFKDLGLLVIDEEQRFGVRHKEKLKSMRENVDVLTLSATPIPRT 788
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L + LTG RD SL+ PP +R PI T+++ ++ + AI ELDRGGQ+++V RI+ +
Sbjct: 789 LQMGLTGIRDMSLLEEPPEDRTPISTYVTEYNPSLIRDAIIRELDRGGQIYFVYNRIEDI 848
Query: 506 EEPMDF-LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
++ M+F L++ P ++IAIAHG+ ++LE M F G +L+CT I+E+GLDIQN N
Sbjct: 849 DQ-MEFKLKELVPELNIAIAHGRMNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVN 907
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+I+ + + GL+QLYQL+GR+GR+D+ + AY Y + L++ + +RL A+++ E G
Sbjct: 908 TMIIYNADKMGLSQLYQLKGRIGRSDRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFGS 967
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A +D+ +RG G + GE Q G + +G DL+ ++L +++ + IS +V I
Sbjct: 968 GFKIAMRDLELRGAGNLLGESQHGHIAKIGYDLYVKLLEQAVREAKGET-ISENKNTVTI 1026
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
+I +N +P +YI+ E +++ + ++D + + + L ++G P + ++
Sbjct: 1027 EIKVNGYIPEDYISENETKIDIYKKIASIQDEDDYS--EIIDELIDRFGDVPKPIVNIMD 1084
Query: 745 KLYVRRMAADIGITKI 760
++ A + I I
Sbjct: 1085 VSIIKAFCAKLSIESI 1100
>gi|374375903|ref|ZP_09633561.1| transcription-repair coupling factor [Niabella soli DSM 19437]
gi|373232743|gb|EHP52538.1| transcription-repair coupling factor [Niabella soli DSM 19437]
Length = 1128
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 239/621 (38%), Positives = 366/621 (58%), Gaps = 26/621 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+ GD+V H G+G + G+ K DV + E V I Y D + + +Y
Sbjct: 444 LQPGDFVTHIDHGVGIYSGLQKMDVNGKTQ---EAVRIIYKDKDVLYVNINSLHKIAKY- 499
Query: 213 LPNETKRPRTLSKLSD--TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNP 269
T + ++ K++ + AW R K K K ++++ DL++LY R QK + P N
Sbjct: 500 ----TGKDGSVPKVNKLGSDAWTRLKEKTKTRVKEIAFDLIKLYAQRKAQKGFAHTPDNY 555
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
E A F YE TPDQ KA DV++D+ E E+PMDRL+CGDVGFGKTEVA+RA F
Sbjct: 556 LQTELEASFIYEDTPDQSKASADVKKDM-ESESPMDRLVCGDVGFGKTEVAIRAAFKTCV 614
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQA +L PT +LA QH+ +R ++P + V ++RF+S EK+E L + G ++I
Sbjct: 615 DGKQAAILVPTTILAFQHYKTFKDRLREFP-VTVDFINRFKSSKEKKETLQKLAEGKIDI 673
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
+VGTH +LG V + +LG+LV+DEEQ+FGV KEKI + ++D LTL+ATPIPRTL +
Sbjct: 674 LVGTHGILGKEVKFKDLGILVIDEEQKFGVAHKEKIKVLRSTIDCLTLTATPIPRTLQFS 733
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
L G RD S+I+TPPP R PI+T + ++++ + AI +E +RGGQVF++ R+ GL E
Sbjct: 734 LMGARDLSIINTPPPNRQPIQTEVQVYNEDVIRDAIYFETERGGQVFFIHNRVAGLAEMA 793
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+Q P + I AHGQ QLEE + F +L+CTNIVESG+DI N NTII+
Sbjct: 794 TMIQGLCPDLSIGFAHGQMEGHQLEEKILDFIDHRYDVLVCTNIVESGVDIPNVNTIIIN 853
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
+ FGL+ L+QLRGRVGR++K+A YL P S L + +RL LE+ ELG GFQ+A
Sbjct: 854 NAHHFGLSDLHQLRGRVGRSNKKAFCYLLAPPMSTLPADSRKRLQTLEQHSELGSGFQIA 913
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV----------DEHCVISVPY 679
+D+ IRG G + G +Q+G + +G + + ++L E++ ++ DE
Sbjct: 914 MRDLDIRGAGNLLGGEQSGFMAEIGFETYQKILDEAIRELKRTQFKELFKDEISKQDDFV 973
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
ID ++ +P +Y+ + + + + + ++ ++ +TE L+ ++G P +
Sbjct: 974 SDCTIDTDLEILIPDDYVESITERLSLYQRLDDSESEEALSVL-YTE-LQDRFGPVPPPV 1031
Query: 740 EILLKKLYVRRMAADIGITKI 760
+ L + + R++A ++G K+
Sbjct: 1032 DDLFETIKCRKLAVELGFEKM 1052
>gi|398817462|ref|ZP_10576080.1| transcription-repair coupling factor Mfd [Brevibacillus sp. BC25]
gi|398030016|gb|EJL23456.1| transcription-repair coupling factor Mfd [Brevibacillus sp. BC25]
Length = 1182
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 240/616 (38%), Positives = 380/616 (61%), Gaps = 27/616 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK----FDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRML 208
L+ GD+VVH GIGK++GI+ + KD Y+ I+YA G + +P+ Q +
Sbjct: 502 LKPGDFVVHVNHGIGKYLGIETKEILGIHKD------YLHIQYAAGDSLFVPIDQIDH-V 554
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PK 267
+Y + +E +P+ S + W+R K K + +++ + DL++LY R + P
Sbjct: 555 QKY-VASEEAQPKIYS--LGGSEWKRVKNKVQSSVKDIAEDLIKLYAARESAVGHIFSPD 611
Query: 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
EF + FPY+ T DQ +A +V+ D+ ER+ PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 612 TTEQREFESMFPYQETQDQLRAISEVKADM-ERKRPMDRLVCGDVGYGKTEVAIRAAFKA 670
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V GKQ VL PT +LA+QH++ ERF++YP I+V +LSRF+S+ E+ L +K G +
Sbjct: 671 VMDGKQVAVLVPTTILAQQHYETFRERFAEYP-IRVEVLSRFRSRKEQNATLKGLKEGTV 729
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
++++GTH LL + + LGLL+VDEEQRFGV KEK+ K +VDV+TL+ATPIPRTL+
Sbjct: 730 DVVIGTHRLLSKDLTFRELGLLIVDEEQRFGVSHKEKLKQIKTNVDVMTLTATPIPRTLH 789
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+++ G RD S+I TPP R P++T++ +S V AI+ E+ R GQVF++ +++G+E+
Sbjct: 790 MSMLGVRDLSVIETPPENRFPVQTYVMDYSPALVREAIEREMARDGQVFFLYNQVQGIEQ 849
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ + P IA+AHGQ +LE + F +G +L+ T I+E+G+DI N NT+I
Sbjct: 850 MAEQISMLVPDARIAVAHGQMNESELEGVILDFLEGNFDVLVSTTIIETGVDIPNVNTLI 909
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ + + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF+
Sbjct: 910 IYNADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFK 969
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD---EHCVISVPYKSVQI 684
+A +D+ IRG G + G +Q G + VG DL+ +ML E++ ++ +H +++ V+I
Sbjct: 970 IAMRDLSIRGAGNLLGAEQHGFINTVGFDLYSQMLKEAIDELKGEVKHEIVT----PVEI 1025
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
++ ++ +PS YI +EM + A + + +E L ++G P ++ LL
Sbjct: 1026 NLQLDAYIPSMYITDSRQKIEMYKKF--VAVSTLEDVDDLSEELLDRFGPVPKPVDNLLT 1083
Query: 745 KLYVRRMAADIGITKI 760
+R A IT+I
Sbjct: 1084 ISRLRVYALKHHITEI 1099
>gi|365903691|ref|ZP_09441514.1| transcription-repair coupling factor [Lactobacillus malefermentans
KCTC 3548]
Length = 1174
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 237/610 (38%), Positives = 374/610 (61%), Gaps = 14/610 (2%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRMLYRY 211
L+ GDYVVH GIG+F G++ ++ D V +Y+ I+Y + +PV Q + L +
Sbjct: 496 DLKPGDYVVHVNHGIGRFEGMQ-TLEVDG-VHQDYMTIDYQKNAKIFIPVTQLN--LIQK 551
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E K+PR ++KL + W + K+K I+ + DL+ELY R +K +P++ A
Sbjct: 552 FVSSEDKKPR-VNKLG-GSEWAKTKSKVASKIEDIADDLVELYAKREAEKGFAFPRDDAY 609
Query: 272 AE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E F FPY TPDQ ++ +++ D+ ER PMDRL+ GDVG+GKTEVALRA F + A
Sbjct: 610 QEQFDNDFPYSETPDQLRSIEEIKHDM-ERVRPMDRLLVGDVGYGKTEVALRAAFKAIEA 668
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QHFD ++ RF YP I +G+LSRFQ+ E + + ++ G ++++
Sbjct: 669 GKQVAFLVPTTILAQQHFDTMTNRFEGYP-ITIGILSRFQTTKEVNQTIKGLEDGTVDVV 727
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
VGTH LL V + +LGLL+VDEEQRFGVK KE+I + VDVLTL+ATPIPRTL++++
Sbjct: 728 VGTHRLLSKDVKFKDLGLLLVDEEQRFGVKHKERIKEIRSDVDVLTLTATPIPRTLHMSM 787
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+I TPP R PI+T++ + + I E+ RGGQVFY+ R+ +E+ +
Sbjct: 788 LGVRDLSVIETPPANRFPIQTYVMEQNAGALQDGIHREMQRGGQVFYLHNRVSDIEKTVS 847
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
++ P ++A HG+ QLE + F +G +L+ T I+E+G+D+ N NT+ V++
Sbjct: 848 QIKALVPDAEVAFIHGKMTEAQLEGVLYDFVRGEYDVLVTTTIIETGIDMPNVNTLFVEN 907
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
GLAQLYQLRGR+GR+++ A+AY Y +L++ + +RL A+++ ELG GF++A
Sbjct: 908 ADHMGLAQLYQLRGRIGRSNRVAYAYFMYQQNKVLTEVSEKRLEAIKDFTELGSGFKIAM 967
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G + G+QQ G + ++G DL+ +ML ++++K +++ I
Sbjct: 968 RDLSIRGAGNLLGKQQHGFIDSIGYDLYSQMLADAVAKK--QGKAKKARSDATLELGIEA 1025
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
LPS YI + +EM + + + + + + L ++G+ P + LLK +++
Sbjct: 1026 YLPSTYIEDEQQKIEMYKRIRQVTDDEEYY--EIEDDLIDRFGEYPMPVANLLKISHLKM 1083
Query: 751 MAADIGITKI 760
A + I KI
Sbjct: 1084 QADEALIEKI 1093
>gi|337290378|ref|YP_004629399.1| transcription-repair-coupling factor [Corynebacterium ulcerans
BR-AD22]
gi|334698684|gb|AEG83480.1| transcription-repair-coupling factor [Corynebacterium ulcerans
BR-AD22]
Length = 1264
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/699 (36%), Positives = 401/699 (57%), Gaps = 29/699 (4%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI--KFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
+VDP +L++GD+VVH+ GIG+F+ + + D T EY+ +EYA P Q
Sbjct: 514 RVDPLALKTGDFVVHETHGIGRFLKMTERTITSGDETSRREYIVLEYAPAKRGQPADQLF 573
Query: 206 RMLYRYNLPNE---TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
+ +L ++ ++P +LSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 574 VPMDSLDLLSKYVGGEKP-SLSKMGGSD-WKNTKKKARAAVREIAGELVELYAKRQSAPG 631
Query: 263 PPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
P+ P +P E FPY T DQ A V+ D+ E+ PMDR+I GDVG+GKTEVA+
Sbjct: 632 HPFAPDSPWQHEMEDNFPYVETEDQMMAIEAVKADM-EKPVPMDRVIVGDVGYGKTEVAV 690
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F V GKQ +VL PT +LA+QH ER + +P + + LSRF S E +E +
Sbjct: 691 RAAFKAVQDGKQVVVLVPTTLLAQQHLSTFDERMAGFP-VNLRGLSRFTSTIEAKETIKG 749
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+ G ++I++GTH LL + + + NLGL++VDEEQRFGV+ KE I + + VDVLT+SATP
Sbjct: 750 LADGTVDIVIGTHRLLQTGIQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATP 809
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL +++ G R+ S I TPP +R PI T++ A +++ +AI+ EL R GQVF+V +
Sbjct: 810 IPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQIAAAIRRELLRDGQVFFVHNK 869
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
+ +E+ L+ P I +AHGQ LE+T++ F +L+CT IVE+GLDI
Sbjct: 870 VSDIEKKARDLRDLVPEARIVVAHGQMSEELLEQTVQGFWDREFDVLVCTTIVETGLDIA 929
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP L++ + +RLA + + +
Sbjct: 930 NANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGQTLTENSYDRLATIAQNND 989
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISV 677
LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D + +
Sbjct: 990 LGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADGKIIDAT 1049
Query: 678 PY--KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKE 735
K ++ID+ ++ +P YIN +E+ + AA Q L+ E + +YG
Sbjct: 1050 DDGPKEIRIDLPVDAHIPESYINAERLRLEVYRKL--AASQSNADLILAVEEMEDRYGPL 1107
Query: 736 PYSMEILLKKLYVRRMAADIGITKIYASG---KMVGMKTNMNKKV-FKMMIDSMTSEVHR 791
P ++ LL +R +A GI+ I G K+ ++ +K+V K ++ S T
Sbjct: 1108 PEEVKRLLAVARLRHLARSAGISDIGVQGTRIKIHPVELPDSKQVRLKRLLPSATYRAAA 1167
Query: 792 NSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
++ EG + + L ++ LL W+ L+E++
Sbjct: 1168 KAIQLSFPKEGRNVTDKPLRDV---ALLQWVADFLSEMF 1203
>gi|315037511|ref|YP_004031079.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL
1112]
gi|312275644|gb|ADQ58284.1| transcription-repair coupling factor [Lactobacillus amylovorus GRL
1112]
Length = 1164
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 236/592 (39%), Positives = 365/592 (61%), Gaps = 14/592 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG+F GIK +++ V +Y+ I Y G +P Q S ++ +Y
Sbjct: 491 LKPGDYVVHVNHGIGRFEGIK--TLENNGVKRDYITITYQHGDQLFVPADQLS-LVQKY- 546
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K P ++KL + W + K K + ++ + DL+ELY R +K + P +
Sbjct: 547 VGSEGKTPH-INKLG-GSEWAKTKRKVQSKVEDIADDLIELYAKRESEKGFAFSPDDDLQ 604
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F FPY TPDQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F +
Sbjct: 605 RQFDDAFPYPETPDQLRSIKEIKEDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIQDN 663
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + +RF +P + +LSRFQ+ AE +E ++ ++ G ++I+V
Sbjct: 664 KQVAFLVPTTILAQQHYETIQDRFKDFP-VNTAMLSRFQTPAESKEIIEGLEDGKIDIVV 722
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLL+VDEEQRFGVK KEK+ K ++DVLTL+ATPIPRTL++++
Sbjct: 723 GTHRLLSKDVHFKDLGLLIVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMV 782
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ TPP R PI+T++ + A E+ RGGQVFY+ RI ++E ++
Sbjct: 783 GVRDLSVMETPPQNRYPIQTYVMEQIPSVIKDACLREMKRGGQVFYLHNRISDIDETVEK 842
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQQ P IA AHG+ QLE+ + +F IL+ T I+E+G+D+ N NT+I++D
Sbjct: 843 LQQLIPNARIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDA 902
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+ + ELG GF++A +
Sbjct: 903 DHYGLSQLYQLRGRIGRSARLAYAYFLYRPNKVLTEVGEKRLDAIRDFTELGSGFKIAMR 962
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + +VG DL+ +ML +++ + +V + +ID+ +
Sbjct: 963 DLSIRGAGNMLGAQQHGFIDSVGYDLYSQMLSDAIK--ERKGKKAVKKSNAEIDLKLEVY 1020
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+P YI E +E + + A+QD L + + L ++G P ++E LL
Sbjct: 1021 IPDSYIGDQEEKIEFYKKIKAVADQD--ELDKIEDELIDRFGDYPTAVENLL 1070
>gi|442611319|ref|ZP_21026025.1| Transcription-repair coupling factor [Pseudoalteromonas luteoviolacea
B = ATCC 29581]
gi|441747247|emb|CCQ12087.1| Transcription-repair coupling factor [Pseudoalteromonas luteoviolacea
B = ATCC 29581]
Length = 1156
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 247/653 (37%), Positives = 384/653 (58%), Gaps = 22/653 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS-RMLYRYN 212
L+ G +VH G+G+++G++ + + + E+V I YA+ AKL V S +L RY+
Sbjct: 485 LKEGQPIVHLDHGVGRYIGLQ--TIEANGIATEFVTITYAND-AKLYVPVGSLHLLSRYS 541
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP---KNP 269
ET P L KL + AWE+ K K ++ + +L+++Y R Q +P Y
Sbjct: 542 GGEETSAP--LHKLG-SDAWEKAKRKAAEKVRDVAAELLDIYAKR--QSKPGYAFKLDKK 596
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
A EFA FP+E T DQ+ A V D+ + + MDRL+CGDVGFGKTEVA+RA F V+
Sbjct: 597 AYNEFAESFPFEETDDQRNAIEAVLMDM-QSDQAMDRLVCGDVGFGKTEVAMRAAFVAVN 655
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQ VL PT +LA+QH++ +RF+ P ++VG+LSRF+S E++E L ++ G L+I
Sbjct: 656 DGKQVAVLVPTTLLAQQHYENFKDRFADLP-VEVGVLSRFKSTKEQKESLTKLQEGKLDI 714
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH LL + + +LGLL+VDEE RFGV+QKEKI + VD+LTL+ATPIPRTL +A
Sbjct: 715 VIGTHKLLQEDIKFADLGLLIVDEEHRFGVRQKEKIKQLRADVDILTLTATPIPRTLNMA 774
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
++G RD S+I+TPP +RL +KT + E + AI E+ RGGQV+++ ++ +++
Sbjct: 775 MSGMRDLSIIATPPAKRLAVKTFVREREDELIREAILREIKRGGQVYFLHNNVETIDKVT 834
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+ P + AHGQ R+LE M F +L+CT I+E+G+D+ ANTI++
Sbjct: 835 QDIMALVPEATVTTAHGQMRERELETLMADFYHQKYNVLVCTTIIETGIDVPTANTILMD 894
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
+ GLAQ++QLRGRVGR+ +A+AYL + L+ A++RL A+E +LG GF LA
Sbjct: 895 RADRLGLAQMHQLRGRVGRSHHQAYAYLLTKPTNALTPDAVKRLHAIESLEDLGAGFALA 954
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEH---CVISVPYKSVQIDI 686
D+ IRG G + G++Q+G + ++G L+ EML ++++ + E + ++ K ++D+
Sbjct: 955 THDLEIRGAGELLGDEQSGQIQSIGFTLYMEMLEQAVNALKEGKEPTLDNLLSKQTEVDL 1014
Query: 687 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
I LP YI + + A+ QD L + L ++G P + + L
Sbjct: 1015 KIPALLPDAYIPDVSTRLSFYKRI--ASAQDSQALDELQVELIDRFGLLPDATKHLFSVQ 1072
Query: 747 YVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGD 799
+++ A IGI +I AS K + + KV M I + + NS ++ D
Sbjct: 1073 SIKQKAQHIGICRIDASAKGGYFEFTAHTKVNPMFIIGL---IQSNSSIYKMD 1122
>gi|384515290|ref|YP_005710382.1| transcription-repair-coupling factor [Corynebacterium ulcerans 809]
gi|334696491|gb|AEG81288.1| transcription-repair-coupling factor [Corynebacterium ulcerans 809]
Length = 1264
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/699 (36%), Positives = 401/699 (57%), Gaps = 29/699 (4%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI--KFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
+VDP +L++GD+VVH+ GIG+F+ + + D T EY+ +EYA P Q
Sbjct: 514 RVDPLALKTGDFVVHETHGIGRFLKMTERTITSGDETSRREYIVLEYAPAKRGQPADQLF 573
Query: 206 RMLYRYNLPNE---TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
+ +L ++ ++P +LSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 574 VPMDSLDLLSKYVGGEKP-SLSKMGGSD-WKNTKKKARAAVREIAGELVELYAKRQSAPG 631
Query: 263 PPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
P+ P +P E FPY T DQ A V+ D+ E+ PMDR+I GDVG+GKTEVA+
Sbjct: 632 HPFAPDSPWQHEMEDNFPYVETEDQMMAIEAVKADM-EKPVPMDRVIVGDVGYGKTEVAV 690
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F V GKQ +VL PT +LA+QH ER + +P + + LSRF S E +E +
Sbjct: 691 RAAFKAVQDGKQVVVLVPTTLLAQQHLSTFDERMAGFP-VNLRGLSRFTSTIEAKETIKG 749
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+ G ++I++GTH LL + + + NLGL++VDEEQRFGV+ KE I + + VDVLT+SATP
Sbjct: 750 LADGTVDIVIGTHRLLQTGIQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATP 809
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL +++ G R+ S I TPP +R PI T++ A +++ +AI+ EL R GQVF+V +
Sbjct: 810 IPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQIAAAIRRELLRDGQVFFVHNK 869
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
+ +E+ L+ P I +AHGQ LE+T++ F +L+CT IVE+GLDI
Sbjct: 870 VSDIEKKARDLRDLVPEARIVVAHGQMSEELLEQTVQGFWDREFDVLVCTTIVETGLDIA 929
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP L++ + +RLA + + +
Sbjct: 930 NANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGQTLTENSYDRLATIAQNND 989
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISV 677
LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D + +
Sbjct: 990 LGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADGKIIDAT 1049
Query: 678 PY--KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKE 735
K ++ID+ ++ +P YIN +E+ + AA Q L+ E + +YG
Sbjct: 1050 DDGPKEIRIDLPVDAHIPESYINAERLRLEVYRKL--AASQSNADLILAVEEMEDRYGPL 1107
Query: 736 PYSMEILLKKLYVRRMAADIGITKIYASG---KMVGMKTNMNKKV-FKMMIDSMTSEVHR 791
P ++ LL +R +A GI+ I G K+ ++ +K+V K ++ S T
Sbjct: 1108 PEEVKRLLAVARLRHLARSAGISDIGVQGTRIKIHPVELPDSKQVRLKRLLPSATYRAAA 1167
Query: 792 NSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
++ EG + + L ++ LL W+ L+E++
Sbjct: 1168 KAIQLSFPKEGRNVTDKPLRDV---ALLQWVADFLSEMF 1203
>gi|385816869|ref|YP_005853259.1| transcription-repair coupling factor [Lactobacillus amylovorus
GRL1118]
gi|327182807|gb|AEA31254.1| transcription-repair coupling factor [Lactobacillus amylovorus
GRL1118]
Length = 1164
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 236/592 (39%), Positives = 365/592 (61%), Gaps = 14/592 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG+F GIK +++ V +Y+ I Y G +P Q S ++ +Y
Sbjct: 491 LKPGDYVVHVNHGIGRFEGIK--TLENNGVKRDYITITYQHGDQLFVPADQLS-LVQKY- 546
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K P ++KL + W + K K + ++ + DL+ELY R +K + P +
Sbjct: 547 VGSEGKTPH-INKLG-GSEWAKTKRKVQSKVEDIADDLIELYAKRESEKGFAFSPDDDLQ 604
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F FPY TPDQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F +
Sbjct: 605 RQFDDAFPYPETPDQLRSIKEIKEDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIQDN 663
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + +RF +P + +LSRFQ+ AE +E ++ ++ G ++I+V
Sbjct: 664 KQVAFLVPTTILAQQHYETIQDRFKDFP-VNTAMLSRFQTPAESKEIIEGLEDGKIDIVV 722
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLL+VDEEQRFGVK KEK+ K ++DVLTL+ATPIPRTL++++
Sbjct: 723 GTHRLLSKDVHFKDLGLLIVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMV 782
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ TPP R PI+T++ + A E+ RGGQVFY+ RI ++E ++
Sbjct: 783 GVRDLSVMETPPQNRYPIQTYVMEQIPSVIKDACLREMKRGGQVFYLHNRISDIDETVEK 842
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQQ P IA AHG+ QLE+ + +F IL+ T I+E+G+D+ N NT+I++D
Sbjct: 843 LQQLIPNARIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDA 902
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+ + ELG GF++A +
Sbjct: 903 DHYGLSQLYQLRGRIGRSARLAYAYFLYRPNKVLTEVGEKRLDAIRDFTELGSGFKIAMR 962
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + +VG DL+ +ML +++ + +V + +ID+ +
Sbjct: 963 DLSIRGAGNMLGAQQHGFIDSVGYDLYSQMLSDAIK--ERKGKKAVKKSNAEIDLKLEVY 1020
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+P YI E +E + + A+QD L + + L ++G P ++E LL
Sbjct: 1021 IPDSYIGDQEEKIEFYKKIKAVADQD--ELDKIEDELIDRFGDYPTAVENLL 1070
>gi|397653615|ref|YP_006494298.1| transcription-repair coupling factor [Corynebacterium ulcerans 0102]
gi|393402571|dbj|BAM27063.1| transcription-repair coupling factor [Corynebacterium ulcerans 0102]
Length = 1263
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/699 (36%), Positives = 401/699 (57%), Gaps = 29/699 (4%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI--KFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
+VDP +L++GD+VVH+ GIG+F+ + + D T EY+ +EYA P Q
Sbjct: 513 RVDPLALKTGDFVVHETHGIGRFLKMTERTITSGDETSRREYIVLEYAPAKRGQPADQLF 572
Query: 206 RMLYRYNLPNE---TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
+ +L ++ ++P +LSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 573 VPMDSLDLLSKYVGGEKP-SLSKMGGSD-WKNTKKKARAAVREIAGELVELYAKRQSAPG 630
Query: 263 PPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
P+ P +P E FPY T DQ A V+ D+ E+ PMDR+I GDVG+GKTEVA+
Sbjct: 631 HPFAPDSPWQHEMEDNFPYVETEDQMMAIEAVKADM-EKPVPMDRVIVGDVGYGKTEVAV 689
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F V GKQ +VL PT +LA+QH ER + +P + + LSRF S E +E +
Sbjct: 690 RAAFKAVQDGKQVVVLVPTTLLAQQHLSTFDERMAGFP-VNLRGLSRFTSTIEAKETIKG 748
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+ G ++I++GTH LL + + + NLGL++VDEEQRFGV+ KE I + + VDVLT+SATP
Sbjct: 749 LADGTVDIVIGTHRLLQTGIQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATP 808
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL +++ G R+ S I TPP +R PI T++ A +++ +AI+ EL R GQVF+V +
Sbjct: 809 IPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQIAAAIRRELLRDGQVFFVHNK 868
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
+ +E+ L+ P I +AHGQ LE+T++ F +L+CT IVE+GLDI
Sbjct: 869 VSDIEKKARDLRDLVPEARIVVAHGQMSEELLEQTVQGFWDREFDVLVCTTIVETGLDIA 928
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP L++ + +RLA + + +
Sbjct: 929 NANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGQTLTENSYDRLATIAQNND 988
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISV 677
LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D + +
Sbjct: 989 LGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADGKIIDAT 1048
Query: 678 PY--KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKE 735
K ++ID+ ++ +P YIN +E+ + AA Q L+ E + +YG
Sbjct: 1049 DDGPKEIRIDLPVDAHIPESYINAERLRLEVYRKL--AASQSNADLILAVEEMEDRYGPL 1106
Query: 736 PYSMEILLKKLYVRRMAADIGITKIYASG---KMVGMKTNMNKKV-FKMMIDSMTSEVHR 791
P ++ LL +R +A GI+ I G K+ ++ +K+V K ++ S T
Sbjct: 1107 PEEVKRLLAVARLRHLARSAGISDIGVQGTRIKIHPVELPDSKQVRLKRLLPSATYRAAA 1166
Query: 792 NSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
++ EG + + L ++ LL W+ L+E++
Sbjct: 1167 KAIQLSFPKEGRNVTDKPLRDV---ALLQWVADFLSEMF 1202
>gi|372222686|ref|ZP_09501107.1| transcription-repair coupling factor [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 1120
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 249/650 (38%), Positives = 375/650 (57%), Gaps = 32/650 (4%)
Query: 137 SGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADG 195
+GY+ S K + L GDYV H GIG+F G+ K DV+ I+ + Y D
Sbjct: 420 NGYSKKQAISLK-ELTKLEVGDYVTHIDHGIGRFGGLQKIDVEGKKQEAIKLI---YGDR 475
Query: 196 MAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYL 255
+ + +YN + P + KL + AW++ K K K ++ + +L++LY
Sbjct: 476 DILYVSIHSLHKISKYN--GKDGAPPKVFKLG-SAAWKKLKQKTKSRVKHIAFNLIKLYA 532
Query: 256 HRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGF 314
R +K Y P + E A F YE TPDQ KA D ++D+ E E PMDRLICGDVGF
Sbjct: 533 KRRTEKGFQYAPDSYLQHELEASFIYEDTPDQAKATEDFKKDM-ESERPMDRLICGDVGF 591
Query: 315 GKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAE 374
GKTEVA+RA F V GKQ VL PT +LA QH +R ++P + + L+RF++ E
Sbjct: 592 GKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHAKTFRKRLEEFP-VTIDYLNRFRTTKE 650
Query: 375 KEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDV 434
K++ L+ ++ G ++II+GTH L+ V + +LGLL+VDEEQ+FGV K+K+ + K +VDV
Sbjct: 651 KKDVLERLEAGQVDIIIGTHQLVNKNVKFKDLGLLIVDEEQKFGVAVKDKLKAIKENVDV 710
Query: 435 LTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQ 494
LTL+ATPIPRTL +L RD S+I+TPPP R PI++ + ++E + A+ YE+ RGGQ
Sbjct: 711 LTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIESRVIGLNEEVIRDAVSYEISRGGQ 770
Query: 495 VFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIV 554
VF++ RI+ ++E LQ+ P I I HGQ ++LEE M F G +L+ T I+
Sbjct: 771 VFFIHNRIENIKEVAGMLQRLVPDAKIGIGHGQMDGKKLEELMISFMNGEFDVLVSTTII 830
Query: 555 ESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLA 614
ESGLD+ NANTI + + FGL+ L+Q+RGRVGR++K+A Y P ++ +A +R+
Sbjct: 831 ESGLDVPNANTIFIHNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYESMTPEARKRIE 890
Query: 615 ALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCV 674
ALE+ +LG GF +A KD+ IRG G + G +Q+G + +G + + ++L E++ ++ E+
Sbjct: 891 ALEQFTDLGSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFETYQKILSEAIDELKENEF 950
Query: 675 IS------------VPYKSVQIDININPRLPSEYINHLENPMEM---VNEAEKAAEQDIW 719
V K +D + P EYIN++ + + +NE E
Sbjct: 951 KELYNEVEGNDRKKVYVKETTLDTDFQLLFPDEYINNITERLNLYTKLNETTNETE---- 1006
Query: 720 CLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITK-IYASGKMVG 768
L QF + L+ ++G+ P LL + V+ +A IG+ K + GK VG
Sbjct: 1007 -LQQFEQQLKDRFGELPDEAVDLLNSVRVKWIANKIGLEKVVMKKGKFVG 1055
>gi|423388177|ref|ZP_17365403.1| transcription-repair coupling factor [Bacillus cereus BAG1X1-3]
gi|401644367|gb|EJS62059.1| transcription-repair coupling factor [Bacillus cereus BAG1X1-3]
Length = 1176
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/614 (39%), Positives = 382/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|227504114|ref|ZP_03934163.1| transcription-repair coupling factor [Corynebacterium striatum ATCC
6940]
gi|227199290|gb|EEI79338.1| transcription-repair coupling factor [Corynebacterium striatum ATCC
6940]
Length = 1220
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/634 (38%), Positives = 373/634 (58%), Gaps = 22/634 (3%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQK-DSTVPIEYVFIEYADGMAKLPVKQAS 205
+VDP +L+ GD+VVH+ GIG+F+ + + +Q D T EY+ +EYA P Q
Sbjct: 507 RVDPLALKQGDHVVHETHGIGRFLKMAERTIQSGDETSRREYIVLEYAASKRGQPADQLW 566
Query: 206 RMLYRYNLPNE---TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
+ +L ++ ++P TLSK+ + W+ K K + A++++ +L+ELY R Q
Sbjct: 567 VPMDSLDLLSKYTGGEKP-TLSKMGGSD-WKNTKKKARAAVREIAGELVELYAKR--QAS 622
Query: 263 PPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
P + P P AE FPY T DQ A V+ D+ E PMDR++ GDVG+GKTEV
Sbjct: 623 PGHQFAPDTPWQAEMEDNFPYIETEDQMLAIDAVKEDM-ESTVPMDRVVVGDVGYGKTEV 681
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V G Q VL PT +LA+QH D ER + +P + + +LSRF S + +E +
Sbjct: 682 AVRAAFKAVQDGMQVAVLVPTTLLAQQHADTFRERMTGFP-VNIQVLSRFTSTKDAKEIV 740
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ G ++I++GTH LL + V + NLGL+VVDEEQRFGV+ KE I + K SVDVLT+SA
Sbjct: 741 SGLADGSVDIVIGTHRLLQTGVHWKNLGLIVVDEEQRFGVEHKEHIKALKASVDVLTMSA 800
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL +++ G R+ S I TPP +R P+ T++ A+ +++ +AI+ EL R GQ F++
Sbjct: 801 TPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYEDKQIAAAIRRELLRDGQTFFIH 860
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
++ +E+ L++ P I +AHGQ LE+T++ F +L+CT IVE+GLD
Sbjct: 861 NKVSDIEKKARELRELVPEARIVVAHGQMNEEALEQTVQGFWDREYDVLVCTTIVETGLD 920
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
I NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP + L++ + +RLA + +
Sbjct: 921 IANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTETSYDRLATIAQN 980
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
+LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ VP
Sbjct: 981 NDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVETFKALARGEVPK 1040
Query: 680 ------KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYG 733
K ++ID+ ++ +P +YIN +E+ + AA +D L E + +YG
Sbjct: 1041 ATDDGPKEIRIDLPVDAHIPEDYINSERLRLEVYRKL--AASKDNADLQLAVEEMEDRYG 1098
Query: 734 KEPYSMEILLKKLYVRRMAADIGITKIYASGKMV 767
P + LL +R A G++ I G +
Sbjct: 1099 PLPQPVTRLLAVARLRHQARRAGVSDITVQGTRI 1132
>gi|430824329|ref|ZP_19442893.1| transcription-repair coupling factor [Enterococcus faecium E0120]
gi|430867735|ref|ZP_19482633.1| transcription-repair coupling factor [Enterococcus faecium E1574]
gi|431744834|ref|ZP_19533700.1| transcription-repair coupling factor [Enterococcus faecium E2071]
gi|430441344|gb|ELA51459.1| transcription-repair coupling factor [Enterococcus faecium E0120]
gi|430550122|gb|ELA89931.1| transcription-repair coupling factor [Enterococcus faecium E1574]
gi|430604994|gb|ELB42416.1| transcription-repair coupling factor [Enterococcus faecium E2071]
Length = 1173
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/555 (40%), Positives = 360/555 (64%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSATEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYINHLENPMEM 706
LP Y+ +E+
Sbjct: 1029 LPETYVADQRQKIEI 1043
>gi|407450995|ref|YP_006722719.1| transcription-repair coupling factor [Riemerella anatipestifer
RA-CH-1]
gi|403311978|gb|AFR34819.1| Transcription-repair coupling factor (superfamily II helicase)
[Riemerella anatipestifer RA-CH-1]
Length = 1096
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 238/626 (38%), Positives = 366/626 (58%), Gaps = 25/626 (3%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVF-IEYADGMAKLPVKQASRML 208
D SL+ GDY+ H GIGKF+G+ V+ ++ + F + Y +G A +
Sbjct: 407 DLMSLKVGDYIAHIDHGIGKFMGL---VKVNNGGKTQECFKLTYKNGDLLYVSIHALHKI 463
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PK 267
+YN + TLSK+ + +W+ K K K ++++ DL++LY R K Y P
Sbjct: 464 SKYN--GAEGKEITLSKIG-SPSWKNLKNKTKAKVKQIAFDLIKLYAKRKTAKGFAYTPD 520
Query: 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
E A F YE TPDQ+KA LDV+RD+ E +T MDRL+CGDVGFGKTEVA+RA F
Sbjct: 521 TYLQNELEASFLYEDTPDQEKATLDVKRDM-EADTIMDRLVCGDVGFGKTEVAIRAAFKA 579
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
+ GKQ VL PT +LA QH+ +ER +P + + L+RF++ +K E L+ + G +
Sbjct: 580 TTDGKQVAVLVPTTILAFQHYRSFAERLKDFP-VNISYLNRFRTAKQKRETLEKLAEGKI 638
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+II+GTH L +V + +LGLL++DEE +FGV K+K+ + K ++D LTL+ATPIPRTL
Sbjct: 639 DIIIGTHQLASDKVKFKDLGLLIIDEEHKFGVSVKDKLKTLKANIDTLTLTATPIPRTLQ 698
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+L RD S+I TPPP R P++T L F +E + AI YEL R GQV+++ RI L++
Sbjct: 699 FSLMAARDLSVIKTPPPNRQPVETQLIGFDEEIIRDAISYELQRDGQVYFINNRIDNLKD 758
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+Q+ P + HGQ +QLEE + F +G +L+ T IVESG+D+ NANTI
Sbjct: 759 IAGMIQRLIPDARVITGHGQMDGKQLEENILDFMEGRYDVLVSTTIVESGVDVPNANTIF 818
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ D Q+FG+A ++Q+RGRVGR++++A YL P +++ A +RL A+E+ +LG GFQ
Sbjct: 819 INDAQRFGMADVHQMRGRVGRSNRKAFCYLITPPFDMVTSDARKRLEAIEQFSDLGSGFQ 878
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY-------- 679
+A KD+ IRG G + G +Q+G + +G + + +++ E+L ++ +
Sbjct: 879 IAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKIMQEALEELQNDAEFESLFENEADRKK 938
Query: 680 -----KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGK 734
K V ID ++ LP Y++ E + + + + ++ L +F L ++G
Sbjct: 939 LFKSSKDVNIDTDLELMLPDSYVSSTEERLSLYQKLSEINNKE--ELKRFEAELEDRFGS 996
Query: 735 EPYSMEILLKKLYVRRMAADIGITKI 760
P LLK + ++ +AA IG KI
Sbjct: 997 LPEEAINLLKSVELKWLAAAIGFEKI 1022
>gi|300857300|ref|YP_003782284.1| transcription-repair coupling factor [Clostridium ljungdahlii DSM
13528]
gi|300437415|gb|ADK17182.1| predicted transcription-repair coupling factor [Clostridium
ljungdahlii DSM 13528]
Length = 1173
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 243/611 (39%), Positives = 381/611 (62%), Gaps = 18/611 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYR 210
L+ GD+VVH GIG + GIK +VQ +E ++ D KL PV+Q M+ +
Sbjct: 504 LKPGDFVVHVNHGIGIYKGIKQLEVQGHKKDYLELIY----DSEDKLYVPVEQLD-MVQK 558
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPA 270
Y + +E K P+ +SKL + W + K K K +I+++ DL++LY R K Y K+
Sbjct: 559 Y-IGSEGKSPK-VSKLGGSD-WAKAKKKVKKSIEEIAEDLVKLYAIRSTLKGYKYSKDTV 615
Query: 271 I-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
+F +FPYE TPDQ D+++D+ E + MDRL+CGDVG+GKTEVA+RA F V
Sbjct: 616 WQKQFEDEFPYEETPDQLTTIQDIKQDM-ESDKVMDRLLCGDVGYGKTEVAVRAAFKAVM 674
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQ L PT +LA+QH++ +RFS +P +K+ ++SRF++ A+++ + +K G ++I
Sbjct: 675 DGKQVAFLVPTTILAQQHYNNFVQRFSDFP-VKIDMISRFRTTAQQKASIKAVKVGDVDI 733
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH +L V + +LGLL++DEEQRFGV KEKI + +VDVLTLSATPIPRTL+++
Sbjct: 734 LIGTHRILQKDVQFKDLGLLIIDEEQRFGVSHKEKIKKIRKNVDVLTLSATPIPRTLHMS 793
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
L G RD S+I TPP ER PI+T++ ++ + + AI E++RGGQV++V R++ ++E
Sbjct: 794 LVGARDISVIETPPEERYPIQTYVVEYNDQLIRDAILREINRGGQVYFVYNRVESIKEMA 853
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
++ + P +A+AHGQ R+LE + F + +L+ T I+E+G+DIQN NT+I+
Sbjct: 854 SYIAKLIPEAKVAVAHGQMQERELENIIVDFMKNEYNVLVATTIIETGMDIQNVNTMIIY 913
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
D + GL+QLYQLRGRVGR ++ A+ YL Y +L++ A +RL A++E ELG GF++A
Sbjct: 914 DADKMGLSQLYQLRGRVGRTNRMAYCYLSYRRDKVLTEVAEKRLKAIKEFTELGSGFKIA 973
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
KD+ IRG G + G Q G + VG DL+ ML +++ K+ + + P ++ +++ I+
Sbjct: 974 LKDLEIRGAGNMMGASQHGHMAAVGYDLYCRMLEDTI-KLIKGDIDKEPVETT-VELKID 1031
Query: 690 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+P YI +E+ + + D ++ E L ++ P S+ L+ Y+R
Sbjct: 1032 AYIPDNYIKSEVQKIEIYKKIAAISSYD--DMLDIKEELEDRFSDIPTSVYNLMDIAYIR 1089
Query: 750 RMAADIGITKI 760
M+ IGI +I
Sbjct: 1090 SMSKKIGIEEI 1100
>gi|314949307|ref|ZP_07852650.1| transcription-repair coupling factor [Enterococcus faecium TX0082]
gi|313644313|gb|EFS08893.1| transcription-repair coupling factor [Enterococcus faecium TX0082]
Length = 1173
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/555 (40%), Positives = 360/555 (64%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGSIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYINHLENPMEM 706
LP Y+ +E+
Sbjct: 1029 LPETYVADQRQKIEI 1043
>gi|298244980|ref|ZP_06968786.1| transcription-repair coupling factor [Ktedonobacter racemifer DSM
44963]
gi|297552461|gb|EFH86326.1| transcription-repair coupling factor [Ktedonobacter racemifer DSM
44963]
Length = 1169
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/626 (40%), Positives = 372/626 (59%), Gaps = 28/626 (4%)
Query: 143 GGFSYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKL-- 199
F +V+P GDYVVH++ GIG+F G+ K ++ + V EY+ I YA G KL
Sbjct: 497 ASFLAEVNP-----GDYVVHQEHGIGRFEGLTKMNL---AGVEREYLLIHYA-GTDKLYI 547
Query: 200 PVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK 259
P Q R+ + + LSKL TT W R K++ K ++Q + +L++LY R
Sbjct: 548 PTDQLDRVTRFIGMGDSVP---ALSKLG-TTEWTRAKSRVKESVQDVARELLKLYSAR-- 601
Query: 260 QKRPPYP-----KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGF 314
+ P Y + P + E FPYE TPDQ +A +V+ D+ ER MDRL+CGDVG+
Sbjct: 602 EAAPGYAFSPDSEQPWLQELEDAFPYEETPDQARAIEEVKADM-ERPKAMDRLVCGDVGY 660
Query: 315 GKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAE 374
GKTEVALRA F V +Q VL PT +LA QH++ ER YP ++V LLSRF+S+ E
Sbjct: 661 GKTEVALRAAFKSVLDQRQVAVLVPTTILALQHYNTFKERLKAYP-VRVELLSRFRSEKE 719
Query: 375 KEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDV 434
+++ L+ + G ++II+GTH LL VV+ +LGLL+VDEEQRFGV KE++ + VDV
Sbjct: 720 QKQVLEDLAMGKVDIIIGTHRLLQKDVVFFHLGLLIVDEEQRFGVMHKERLKQLRNEVDV 779
Query: 435 LTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQ 494
LT++ATPIPRTL+++L RD S+I TPP ERLPI+T + + E + AI E+DRGGQ
Sbjct: 780 LTMTATPIPRTLHMSLVNLRDMSVIETPPQERLPIRTTIREYDDELIREAILREIDRGGQ 839
Query: 495 VFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIV 554
VF+V R++G++ LQ+ P I + HGQ LE+ M F G +LI T I+
Sbjct: 840 VFFVHNRVQGIQMIAQKLQKLVPEARITVGHGQMNEDMLEKVMLNFTNGEFDVLISTTII 899
Query: 555 ESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLA 614
E+GLDI NANTIIV + FGL+QLYQLRGRVGR +A+A+ FY + L+ +RL
Sbjct: 900 ENGLDIPNANTIIVNNAAYFGLSQLYQLRGRVGRGTHQAYAHFFYSKNARLTPIQEKRLR 959
Query: 615 ALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCV 674
A+ E ELG GF++A KD+ IRG G + G +Q+G + +G DL+ ++L E++ ++ V
Sbjct: 960 AIFEATELGAGFRIAMKDLEIRGAGNLLGGEQSGFMNTIGFDLYCKLLAEAIQEIQGKPV 1019
Query: 675 ISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGK 734
V + +D+ ++ LP ++I + ++ + M+ L ++G
Sbjct: 1020 -EVAGIATSVDLPLDSYLPDDFIGDRTLKVNFYQRLANLSQPEQVEAME--AELTDRFGP 1076
Query: 735 EPYSMEILLKKLYVRRMAADIGITKI 760
P ++ LL + ++ AA +G I
Sbjct: 1077 LPAPVQNLLSLVRLKVQAAQLGYESI 1102
>gi|417770006|ref|ZP_12417919.1| transcription-repair coupling factor [Leptospira interrogans serovar
Pomona str. Pomona]
gi|418681997|ref|ZP_13243217.1| transcription-repair coupling factor [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|400326007|gb|EJO78276.1| transcription-repair coupling factor [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|409948023|gb|EKN98014.1| transcription-repair coupling factor [Leptospira interrogans serovar
Pomona str. Pomona]
Length = 1180
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 247/623 (39%), Positives = 391/623 (62%), Gaps = 21/623 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRMLYRYN 212
L+ GDYVVH G+G+F +K + +++ +EY+ G + +P+ Q S ++ RY
Sbjct: 514 LKEGDYVVHIHHGVGRF--LKIERTSAGGKERDFLKLEYSGGDSLFVPLDQIS-LVQRYI 570
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E+ R +L K + W++ K + + A++ + DL+++Y +RLK + +P +
Sbjct: 571 GGTESPRLDSLGK----STWKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQ 626
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG
Sbjct: 627 EEFEAEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAG 685
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
+Q M+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++V
Sbjct: 686 RQIMMLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVV 744
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH++L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALT
Sbjct: 745 GTHAILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALT 804
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G R+ S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++
Sbjct: 805 GIRELSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNY 864
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L + P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+
Sbjct: 865 LSKLVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRA 924
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +
Sbjct: 925 DLFGLSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMR 984
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININP 690
D+ IRG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N
Sbjct: 985 DLEIRGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNF 1041
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYV 748
+P YI+ +E + E A +D+ + + + ++G+ P + ILL+K +
Sbjct: 1042 FIPETYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--I 1097
Query: 749 RRMAADIGITKIYASGKMVGMKT 771
R +A+++G + + MK+
Sbjct: 1098 RTLASNLGFEFVTEMKDEIKMKS 1120
>gi|333995233|ref|YP_004527846.1| transcription-repair coupling factor [Treponema azotonutricium
ZAS-9]
gi|333735947|gb|AEF81896.1| transcription-repair coupling factor [Treponema azotonutricium
ZAS-9]
Length = 1141
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/529 (42%), Positives = 343/529 (64%), Gaps = 11/529 (2%)
Query: 146 SYKVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQ 203
S +D + L GDYVVH GIG F GI + K +Y+ +EY D +P++Q
Sbjct: 469 SAAIDTFVELNPGDYVVHVNYGIGLFKGI--ERVKAMGHERDYIKVEYLGDETVFVPIEQ 526
Query: 204 ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263
+ ++ RY + NE PR + + +WE RK + K +++ + L+ LY R +
Sbjct: 527 VN-LVQRY-IGNEGSPPRL--DMLGSKSWENRKGRVKKSVEDIAERLLVLYSKRKQAMGY 582
Query: 264 PYPKNPAIAE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322
YP++ F A FP+E T DQ + +++ D+ E PMDRL+CGDVG+GKTEVA+R
Sbjct: 583 AYPRDSEWQTMFEASFPFEETEDQLRCVEEIKTDM-ESPHPMDRLVCGDVGYGKTEVAVR 641
Query: 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382
A F + GKQ LAPT +LA+QHF+ ERFSK+P +++ +LSRF + + L+ I
Sbjct: 642 ACFKAIMGGKQVAFLAPTTILAEQHFENFQERFSKFP-VRLAMLSRFVEPRQVRKTLEGI 700
Query: 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPI 442
K+G +++++GTH ++ V + NLG +V+DEEQRFGVK KE++ K +VD LTLSATPI
Sbjct: 701 KNGEVDLLIGTHRIIQKDVNFKNLGFMVIDEEQRFGVKDKERLKELKTNVDCLTLSATPI 760
Query: 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502
PRTL+++L RD SL++TPP R PI+T + + +EKV +AI+ E +RGGQVF++ R+
Sbjct: 761 PRTLHMSLLKIRDMSLLATPPQNRHPIETVIEEWDEEKVAAAIRREAERGGQVFFLHNRV 820
Query: 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562
+ L E +++ P + + AHGQ +++LE+ M +F G +L+ T I+E+G+DI N
Sbjct: 821 ESLNETRIKIEKLVPEMLVETAHGQMDAQELEDVMHRFIHGGFHVLVSTTIIENGIDIPN 880
Query: 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECREL 622
NTII+ +G++QLYQLRGRVGR+D+ A+AYLFYP LS+ A++RL + + EL
Sbjct: 881 VNTIIIDRADMYGVSQLYQLRGRVGRSDRVAYAYLFYPKDKALSEVAMKRLQVISDFTEL 940
Query: 623 GQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDE 671
G GF++A KDM IRG G + G +Q+GD+ +VG DL+ +L E++ ++++
Sbjct: 941 GSGFKIAMKDMEIRGAGNLLGREQSGDIYSVGFDLYLRLLDEAVRRLED 989
>gi|418730502|ref|ZP_13288996.1| transcription-repair coupling factor [Leptospira interrogans str. UI
12758]
gi|421116161|ref|ZP_15576549.1| transcription-repair coupling factor [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410012165|gb|EKO70268.1| transcription-repair coupling factor [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410774711|gb|EKR54715.1| transcription-repair coupling factor [Leptospira interrogans str. UI
12758]
gi|455670415|gb|EMF35397.1| transcription-repair coupling factor [Leptospira interrogans serovar
Pomona str. Fox 32256]
Length = 1186
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 247/623 (39%), Positives = 391/623 (62%), Gaps = 21/623 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRMLYRYN 212
L+ GDYVVH G+G+F +K + +++ +EY+ G + +P+ Q S ++ RY
Sbjct: 520 LKEGDYVVHIHHGVGRF--LKIERTSAGGKERDFLKLEYSGGDSLFVPLDQIS-LVQRYI 576
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E+ R +L K + W++ K + + A++ + DL+++Y +RLK + +P +
Sbjct: 577 GGTESPRLDSLGK----STWKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQ 632
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG
Sbjct: 633 EEFEAEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAG 691
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
+Q M+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++V
Sbjct: 692 RQIMMLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVV 750
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH++L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALT
Sbjct: 751 GTHAILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALT 810
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G R+ S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++
Sbjct: 811 GIRELSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNY 870
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L + P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+
Sbjct: 871 LSKLVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRA 930
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +
Sbjct: 931 DLFGLSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMR 990
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININP 690
D+ IRG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N
Sbjct: 991 DLEIRGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNF 1047
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYV 748
+P YI+ +E + E A +D+ + + + ++G+ P + ILL+K +
Sbjct: 1048 FIPETYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--I 1103
Query: 749 RRMAADIGITKIYASGKMVGMKT 771
R +A+++G + + MK+
Sbjct: 1104 RTLASNLGFEFVTEMKDEIKMKS 1126
>gi|415720681|ref|ZP_11468102.1| transcription-repair coupling factor [Gardnerella vaginalis
00703Bmash]
gi|388061624|gb|EIK84275.1| transcription-repair coupling factor [Gardnerella vaginalis
00703Bmash]
Length = 1214
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 261/715 (36%), Positives = 407/715 (56%), Gaps = 38/715 (5%)
Query: 131 GAGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDST--VPIEYV 188
G + SG+ ++D L+ GD+VVH++ GIGKF+G++ K S EY+
Sbjct: 516 GKSSSASGFKSPKRRKKEIDLLDLKPGDFVVHEQHGIGKFIGMRQRNVKTSNGEATREYL 575
Query: 189 FIEYADGMAKLPVKQASRMLYRYNLPNE---TKRPRTLSKLSDTTAWERRKTKGKVAIQK 245
IEYA P + + +L ++ + P+ L+KL W K K + A+Q+
Sbjct: 576 EIEYAPSKRNAPADKLFIPTDQLDLVSKYIGAEIPK-LNKLGGAD-WAATKEKARKAVQE 633
Query: 246 MVVDLMELYLHRLKQKRPPYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPM 304
+ DL++LY R + + P E FPY+ TPDQ +V++D+ ++ PM
Sbjct: 634 VAQDLIKLYSARASSSGFAFSADTPWQKELEDDFPYQETPDQLTTIDEVKQDM-QKPIPM 692
Query: 305 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVG 364
DRLICGDVGFGKTE+A+RA F V GKQ +VLAPT +L +QH++ + RFS +P + V
Sbjct: 693 DRLICGDVGFGKTEIAVRAAFKAVQDGKQVVVLAPTTLLVQQHYETFTNRFSGFP-VTVA 751
Query: 365 LLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEK 424
+SRFQS+ E + ++ G +++++GTH LL + + +LGL+++DEEQRFGV+ KE
Sbjct: 752 AMSRFQSEKEVNNTIQGLESGEVDVVIGTHKLLNPNIKFKDLGLVIIDEEQRFGVEHKET 811
Query: 425 IASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISA 484
+ + + +VDVL+LSATPIPRTL +A+TG R+ S ++TPP +RLP+ T++ A+ +V +
Sbjct: 812 LKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVAAC 871
Query: 485 IKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGA 544
+K EL RGGQVFYV R++ + + +Q+ P +AIAHG+ +QL+ + F
Sbjct: 872 VKRELLRGGQVFYVHNRVEDISKVATNIQKLVPDARVAIAHGKMGEKQLDTIIRDFWHRD 931
Query: 545 IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604
I +L+CT I+E+GLDI NANT+IV +FGL+QL+QLRGRVGR + A+AY Y
Sbjct: 932 IDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPTKP 991
Query: 605 LSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFE 664
++ QA +RLA + + LG GF +A KD+ +RG G + G Q+G + VG DL+ M+ E
Sbjct: 992 MTQQAHDRLATIAQYTALGSGFDVAMKDLELRGTGNLLGNAQSGHIEGVGFDLYVRMVCE 1051
Query: 665 SLSKVDEHCVISVPYK---SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCL 721
++ K E +K S ID+ + +P +YI+ + +E + A L
Sbjct: 1052 AVEKYKEP-----EHKETISTSIDLPVEASIPVDYIDSDKLRLEAYRKLASANNNK--DL 1104
Query: 722 MQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMM 781
+ + L ++G+ P S IL +R A+D+GIT+I + GK V + K+ M
Sbjct: 1105 QELRDELLDRFGEPPESFSILCDVARLRFKASDLGITQISSQGKSVRVIGLDPKESLWMR 1164
Query: 782 IDSMTSEVHRNSLTFEGDQIKAELLLELPRE-----------QLLNWIFQCLAEL 825
+ + V LT L++ P E ++L+W+ Q L +L
Sbjct: 1165 LQRIYRGVKYRPLTH-------TLIIPSPFESSLGTSAMSEREILDWVRQLLEDL 1212
>gi|228471775|ref|ZP_04056548.1| transcription-repair coupling factor [Capnocytophaga gingivalis ATCC
33624]
gi|228276928|gb|EEK15623.1| transcription-repair coupling factor [Capnocytophaga gingivalis ATCC
33624]
Length = 1110
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 239/629 (37%), Positives = 370/629 (58%), Gaps = 22/629 (3%)
Query: 152 YSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYR 210
+ L GDYV H GIGK+ G+ K D++ I+ + Y D + + +
Sbjct: 427 HQLTIGDYVTHIDHGIGKYAGLQKIDIEGKKQEAIKLI---YGDRDVLYVSIHSLHKISK 483
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNP 269
YN + P L KL ++AW+ K K K ++++ +L++LY R + + P +
Sbjct: 484 YN--GKDGAPPRLYKLG-SSAWKALKQKTKARVKQIAFNLIQLYAKRREAVGYAFAPDSY 540
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
E A F YE TPDQ KA L+V++D+ ER PMDRL+CGDVGFGKTEVA+RA F V
Sbjct: 541 LQKELEASFIYEDTPDQSKATLEVKQDM-ERARPMDRLVCGDVGFGKTEVAIRAAFKAVD 599
Query: 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389
GKQ VL PT +LA QH+ ER + P ++V L+RF++ EK + L + G ++I
Sbjct: 600 NGKQVAVLVPTTILAFQHYQTFCERLKELP-VRVEYLNRFRTAKEKNQVLADLASGKVDI 658
Query: 390 IVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449
++GTH ++ +V Y +LGLLV+DEEQ+FGV K+K+ + + ++DVLTL+ATPIPRTL +
Sbjct: 659 LIGTHQIVNEKVKYKDLGLLVIDEEQKFGVAVKDKLKTLRENIDVLTLTATPIPRTLQFS 718
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
L RD S+I+TPPP R PI++ + +F++E + I YEL RGGQVF++ R++ ++E
Sbjct: 719 LMAARDLSVITTPPPNRYPIESQIISFNEEVIRDGIAYELQRGGQVFFIHNRVENIKEVA 778
Query: 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
+Q+ P I I HGQ +QLEE M F G IL+ T I+ESGLD+ NANTI +
Sbjct: 779 GMIQRLIPDAKIGIGHGQMEGKQLEEVMLAFINGDYDILVATTIIESGLDVPNANTIFIH 838
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
+ Q FGL+ L+Q+RGRVGR++K+A Y P+ S L + + +R+ A+ + +LG G +A
Sbjct: 839 NAQHFGLSDLHQMRGRVGRSNKKAFCYFITPNLSELPEDSRKRMQAIAQFSDLGSGIHIA 898
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVI---------SVPYK 680
KD+ IRG G + G +Q+G + ++G D + ++L E+++++ E+ +V
Sbjct: 899 MKDLEIRGAGDLLGGEQSGFINDIGFDAYQKILQEAVTELKENEFAELYADEAQQAVYIT 958
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
Q+D + P YIN + + + NE ++ L Q+ L ++G P
Sbjct: 959 DTQLDSDFELLYPDNYINSITERLNLYNELSNLKNEE--ELSQYEYRLIDRFGALPPQAR 1016
Query: 741 ILLKKLYVRRMAADIGITK-IYASGKMVG 768
LL + ++ +A +GI + + GKM+G
Sbjct: 1017 DLLNSVRIKWLATQMGIERLVMKQGKMLG 1045
>gi|431758725|ref|ZP_19547350.1| transcription-repair coupling factor [Enterococcus faecium E3083]
gi|430617093|gb|ELB53979.1| transcription-repair coupling factor [Enterococcus faecium E3083]
Length = 1173
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/555 (40%), Positives = 361/555 (65%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y +D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQSDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYINHLENPMEM 706
LP Y+ +E+
Sbjct: 1029 LPETYVADQRQKIEI 1043
>gi|406027393|ref|YP_006726225.1| transcription-repair coupling factor [Lactobacillus buchneri CD034]
gi|405125882|gb|AFS00643.1| transcription-repair coupling factor [Lactobacillus buchneri CD034]
Length = 1159
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 232/573 (40%), Positives = 361/573 (63%), Gaps = 26/573 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIE-----YVFIEYADGMAKL--PVKQASR 206
L+ GDYVVH GIG++ G+K T+ ++ Y+ I Y D AKL PV Q +
Sbjct: 477 LKPGDYVVHVNHGIGRYEGMK-------TMEVDGKHQDYLTISYKDN-AKLFIPVTQLN- 527
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP 266
++ +Y + +E K PR ++KL + W + K K I+ + +L++LY R +K YP
Sbjct: 528 LIQKY-VSSEDKHPR-INKLG-GSEWAKTKAKVASKIEDIADELIDLYAKRSAEKGYAYP 584
Query: 267 KNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
++ ++ AEF A FPY TPDQ ++ +++RD+ E + PMDRL+ GDVG+GKTEVALRA F
Sbjct: 585 QDDSLQAEFEAAFPYSETPDQLRSATEIKRDM-ETQHPMDRLLVGDVGYGKTEVALRAAF 643
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
+ GKQ L PT +LA+QH++ + +RF +YP I V +LSRFQ+ + +E L +K G
Sbjct: 644 KAIEVGKQVAFLVPTTILAQQHYETMLDRFREYP-ITVRVLSRFQTAKQVKETLQGLKDG 702
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++++VGTH LL V +N+LGLL++DEEQRFGVK KE+I + VDVLTL+ATPIPRT
Sbjct: 703 KVDVVVGTHRLLSKDVKFNDLGLLIIDEEQRFGVKHKERIKEMRSDVDVLTLTATPIPRT 762
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L +++ G RD S+I TPP R PI+T++ + + AI+ E+ RGGQVFY+ R+ +
Sbjct: 763 LNMSMMGVRDLSVIETPPSNRYPIQTYVIEQNAGTIREAIEREMSRGGQVFYLHNRVSDI 822
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
E+ ++ + P + HGQ Q+E+ + F G +L+ T I+E+G+DI N NT
Sbjct: 823 EKTVEQISALVPSARVGYIHGQMSENQMEDILYDFINGEYDVLVTTTIIETGVDIPNVNT 882
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
+ V++ + GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+ + ELG G
Sbjct: 883 LFVENADRMGLSQLYQLRGRIGRSSRVAYAYFMYKPNKVLTEIGEKRLEAIRDFTELGSG 942
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS-VQI 684
F++A +D+ IRG G + G+QQ G V +VG DL+ +ML ++++K + Y++ I
Sbjct: 943 FKIAMRDLSIRGAGNLLGKQQHGFVDSVGYDLYTQMLSDAVAKKRGK---NFEYRTDATI 999
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQD 717
++++ LPS+YI + +E+ + +D
Sbjct: 1000 ELDLEAYLPSDYIQDNQQKIELYKRIRQIENED 1032
>gi|384431074|ref|YP_005640434.1| transcription-repair coupling factor [Thermus thermophilus
SG0.5JP17-16]
gi|333966542|gb|AEG33307.1| transcription-repair coupling factor [Thermus thermophilus
SG0.5JP17-16]
Length = 978
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/615 (41%), Positives = 364/615 (59%), Gaps = 20/615 (3%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRML 208
DP +L GDY++H + G+G+++G+ + ++ V +Y+ + Y +G LPV+Q +L
Sbjct: 315 DPGALSPGDYLIHPEHGVGQYLGL--ETREVLGVKRDYLILRYKGEGKLYLPVEQLP-LL 371
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK---QKRPPY 265
R+ P T P LS L W+R K + + ++++ L+ L R + PP
Sbjct: 372 KRH--PGTTDDPPELSSLGKNE-WQRAKERARKDVEELAGRLLVLQAKRKATPGRAFPPL 428
Query: 266 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
P + E FP+E TPDQK+A +V RDL E PMDRL+ GDVGFGKTEVALRA
Sbjct: 429 PDWDPLVERG--FPFELTPDQKRALEEVLRDL-ESPHPMDRLVSGDVGFGKTEVALRAAH 485
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
VV G Q L PT +LA+QH ERF P ++V +LSRF E+E L + G
Sbjct: 486 RVVGHGAQVAFLVPTTLLAEQHGKTFRERFQGLP-VRVAVLSRFTPPKEEEAILKGLAEG 544
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++I++GTH LL V + +LGLL+VDEE RFGV QKE+I K VD L LSATPIPRT
Sbjct: 545 TVDIVIGTHRLLQEDVRFRDLGLLIVDEEHRFGVAQKERIRELKAEVDTLYLSATPIPRT 604
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
LY AL G +D S I TPPP R PIKT L+ F V AI +EL+RGG+VFYV R+ +
Sbjct: 605 LYSALVGLKDLSSIQTPPPGRKPIKTFLAPFDPLLVREAILFELERGGKVFYVHDRVASI 664
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
E FL+ P I + HGQ +EETM FA+GA +L+ T I+E+GLD+ ANT
Sbjct: 665 EARRRFLESLVPEARIGVVHGQMPESLIEETMLLFAEGAYDVLLATTIIEAGLDVPEANT 724
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
I+++ + GLA LYQLRGRVGR ++EA+AYLF+P + L++ A +RLAA+ + +LG G
Sbjct: 725 ILIERADRLGLATLYQLRGRVGRREEEAYAYLFHPPR--LTEAAEKRLAAIADLSDLGSG 782
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
LAE+DM IRG G + G +Q G + + ++++ E+L E++ K+ I + V +D
Sbjct: 783 HLLAERDMEIRGVGNLLGPEQHGHIRALSLEVYTELLEEAIRKLKGE--IKEERRHVTLD 840
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
+ ++ RLP+EY+ LE + +A + + L + L+ +YG P E +
Sbjct: 841 LALSARLPAEYVGSLEARSRYYSRFAEA--KSLAELSRLVRELKERYGPLPEEAENFVAL 898
Query: 746 LYVRRMAADIGITKI 760
+R +A G+ I
Sbjct: 899 ARLRLVAERKGVVSI 913
>gi|331701922|ref|YP_004398881.1| transcription-repair coupling factor [Lactobacillus buchneri NRRL
B-30929]
gi|329129265|gb|AEB73818.1| transcription-repair coupling factor [Lactobacillus buchneri NRRL
B-30929]
Length = 1178
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 232/573 (40%), Positives = 361/573 (63%), Gaps = 26/573 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIE-----YVFIEYADGMAKL--PVKQASR 206
L+ GDYVVH GIG++ G+K T+ ++ Y+ I Y D AKL PV Q +
Sbjct: 496 LKPGDYVVHVNHGIGRYEGMK-------TMEVDGKHQDYLTISYKDN-AKLFIPVTQLN- 546
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP 266
++ +Y + +E K PR ++KL + W + K K I+ + +L++LY R +K YP
Sbjct: 547 LIQKY-VSSEDKHPR-INKLG-GSEWAKTKAKVASKIEDIADELIDLYAKRSAEKGYAYP 603
Query: 267 KNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
++ ++ AEF A FPY TPDQ ++ +++RD+ E + PMDRL+ GDVG+GKTEVALRA F
Sbjct: 604 QDDSLQAEFEAAFPYSETPDQLRSATEIKRDM-ETQHPMDRLLVGDVGYGKTEVALRAAF 662
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
+ GKQ L PT +LA+QH++ + +RF +YP I V +LSRFQ+ + +E L +K G
Sbjct: 663 KAIEVGKQVAFLVPTTILAQQHYETMLDRFREYP-ITVRVLSRFQTAKQVKETLQGLKDG 721
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++++VGTH LL V +N+LGLL++DEEQRFGVK KE+I + VDVLTL+ATPIPRT
Sbjct: 722 KVDVVVGTHRLLSKDVKFNDLGLLIIDEEQRFGVKHKERIKEMRSDVDVLTLTATPIPRT 781
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L +++ G RD S+I TPP R PI+T++ + + AI+ E+ RGGQVFY+ R+ +
Sbjct: 782 LNMSMMGVRDLSVIETPPSNRYPIQTYVIEQNAGTIREAIEREMSRGGQVFYLHNRVSDI 841
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
E+ ++ + P + HGQ Q+E+ + F G +L+ T I+E+G+DI N NT
Sbjct: 842 EKTVEQISALVPSARVGYIHGQMSENQMEDILYDFINGEYDVLVTTTIIETGVDIPNVNT 901
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
+ V++ + GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+ + ELG G
Sbjct: 902 LFVENADRMGLSQLYQLRGRIGRSSRVAYAYFMYKPNKVLTEIGEKRLEAIRDFTELGSG 961
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS-VQI 684
F++A +D+ IRG G + G+QQ G V +VG DL+ +ML ++++K + Y++ I
Sbjct: 962 FKIAMRDLSIRGAGNLLGKQQHGFVDSVGYDLYTQMLSDAVAKKRGK---NFEYRTDATI 1018
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQD 717
++++ LPS+YI + +E+ + +D
Sbjct: 1019 ELDLEAYLPSDYIQDNQQKIELYKRIRQIENED 1051
>gi|229021662|ref|ZP_04178248.1| Transcription-repair-coupling factor [Bacillus cereus AH1272]
gi|228739637|gb|EEL90047.1| Transcription-repair-coupling factor [Bacillus cereus AH1272]
Length = 1010
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/614 (39%), Positives = 382/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 327 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 383
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 384 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 439
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 440 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 498
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 499 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 557
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 558 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 617
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 618 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 677
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 678 DIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 737
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A RL A++E ELG
Sbjct: 738 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELG 797
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 798 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENIV---- 853
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 854 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 909
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 910 VGYLLQIANIKVLA 923
>gi|325846766|ref|ZP_08169681.1| transcription-repair coupling factor [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325481524|gb|EGC84565.1| transcription-repair coupling factor [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 1163
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 244/644 (37%), Positives = 385/644 (59%), Gaps = 15/644 (2%)
Query: 157 GDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRMLYRYNLPN 215
GDYVVH+ GIG + GI ++ ++T +Y IEY + +PV Q ++ +Y + N
Sbjct: 500 GDYVVHENNGIGIYKGIS-QIEVNNTKK-DYFVIEYQGNDKVFVPVDQMD-LVSKY-IGN 555
Query: 216 ETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAIAEF 274
+ +P+ +S L + W++ K + K A+ ++ DL+ELY R K + + K+ P EF
Sbjct: 556 KGDKPK-ISSLG-SNQWKKAKQRAKKAVDEIADDLVELYAKRSKARGHAFAKDTPWQKEF 613
Query: 275 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 334
F YE T Q ++ +++ D+ E PMDRL+CGDVG+GKTEVALRA F V G Q
Sbjct: 614 EDSFIYEETDSQLRSIDEIKDDM-EDIKPMDRLLCGDVGYGKTEVALRAAFKAVMDGYQV 672
Query: 335 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 394
L PT +LA+QHF + ERF +P I +LSRF SK ++E+++ +K G ++IIVGTH
Sbjct: 673 CFLVPTTILARQHFKTMQERFKDFP-IDCAMLSRFVSKKDQEKYIHNLKSGKIDIIVGTH 731
Query: 395 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 454
LL + + LGLL++DEEQRFGV+ K+K+ K ++DVLTLSATPIPRTL ++LTG R
Sbjct: 732 RLLSKDIKFKKLGLLIIDEEQRFGVRHKDKLKKLKENIDVLTLSATPIPRTLQMSLTGIR 791
Query: 455 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQ 514
D S + PP R P+ T++ + + AI+ ELDR GQV++V R+ +++ + L+
Sbjct: 792 DMSTLDEPPERRQPVNTYVLEYDFSIIKRAIEKELDRDGQVYFVYNRVYNIDKIYNHLKL 851
Query: 515 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 574
P I IAHGQ ++ LE+ ME F G I IL+ T I+E+G+DIQN NTIIV D
Sbjct: 852 LVPDAKIEIAHGQMSAKSLEKIMEDFVSGEIDILLATTIIETGMDIQNVNTIIVYDSDMM 911
Query: 575 GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMG 634
GL+QLYQL+GR+GR+ + ++AY Y +L++ +RL ++++ + G G+++A +D+
Sbjct: 912 GLSQLYQLKGRIGRSSRSSYAYFTYAKGKVLTEIGEKRLKSIKDFSDFGSGYKIAMRDLE 971
Query: 635 IRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPS 694
+RG G I GE Q+G V +G DL+ + L +++ K + S+ + V IDI I+ +P
Sbjct: 972 LRGAGNILGESQSGQVEAIGYDLYVKFLQQAIDKASGKDIDSIKFNDVYIDIKIDAFIPE 1031
Query: 695 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 754
YI ++M + + + L+ E L +YG P ++ ++ ++ MA
Sbjct: 1032 SYIEDSSQKIQMYKRISSIEDLEDYSLL--VEDLIDRYGDIPVMVDNIMYVSLIKSMADK 1089
Query: 755 IGITKIY-ASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFE 797
+G +I +G++ + NK F+ + S +E ++ L F+
Sbjct: 1090 LGFDQIREVNGEIRISFNDRNKFSFEEL--SQINEDYKGELAFD 1131
>gi|69245443|ref|ZP_00603438.1| Transcription-repair coupling factor [Enterococcus faecium DO]
gi|257879854|ref|ZP_05659507.1| transcription-repair coupling factor [Enterococcus faecium 1,230,933]
gi|257882580|ref|ZP_05662233.1| transcription-repair coupling factor [Enterococcus faecium 1,231,502]
gi|257891695|ref|ZP_05671348.1| transcription-repair coupling factor [Enterococcus faecium 1,231,410]
gi|257894170|ref|ZP_05673823.1| transcription-repair coupling factor [Enterococcus faecium 1,231,408]
gi|260559527|ref|ZP_05831708.1| transcription-repair coupling factor [Enterococcus faecium C68]
gi|261206678|ref|ZP_05921376.1| transcription-repair coupling factor [Enterococcus faecium TC 6]
gi|289565039|ref|ZP_06445493.1| transcription-repair coupling factor [Enterococcus faecium D344SRF]
gi|293563193|ref|ZP_06677649.1| transcription-repair coupling factor [Enterococcus faecium E1162]
gi|293570115|ref|ZP_06681195.1| transcription-repair coupling factor [Enterococcus faecium E1071]
gi|294614900|ref|ZP_06694791.1| transcription-repair coupling factor [Enterococcus faecium E1636]
gi|294623704|ref|ZP_06702537.1| transcription-repair coupling factor [Enterococcus faecium U0317]
gi|314938215|ref|ZP_07845515.1| transcription-repair coupling factor [Enterococcus faecium TX0133a04]
gi|314943110|ref|ZP_07849909.1| transcription-repair coupling factor [Enterococcus faecium TX0133C]
gi|314952240|ref|ZP_07855255.1| transcription-repair coupling factor [Enterococcus faecium TX0133A]
gi|314992098|ref|ZP_07857548.1| transcription-repair coupling factor [Enterococcus faecium TX0133B]
gi|314996281|ref|ZP_07861337.1| transcription-repair coupling factor [Enterococcus faecium TX0133a01]
gi|383329920|ref|YP_005355804.1| transcription-repair coupling factor [Enterococcus faecium Aus0004]
gi|389869735|ref|YP_006377158.1| transcription-repair coupling factor [Enterococcus faecium DO]
gi|406579488|ref|ZP_11054719.1| transcription-repair coupling factor [Enterococcus sp. GMD4E]
gi|406581803|ref|ZP_11056938.1| transcription-repair coupling factor [Enterococcus sp. GMD3E]
gi|406584235|ref|ZP_11059270.1| transcription-repair coupling factor [Enterococcus sp. GMD2E]
gi|406589694|ref|ZP_11064121.1| transcription-repair coupling factor [Enterococcus sp. GMD1E]
gi|410937631|ref|ZP_11369490.1| transcription-repair coupling factor [Enterococcus sp. GMD5E]
gi|415892952|ref|ZP_11550051.1| transcription-repair coupling factor [Enterococcus faecium E4453]
gi|416132452|ref|ZP_11597905.1| transcription-repair coupling factor [Enterococcus faecium E4452]
gi|424789589|ref|ZP_18216234.1| transcription-repair coupling factor [Enterococcus faecium V689]
gi|424797373|ref|ZP_18222971.1| transcription-repair coupling factor [Enterococcus faecium S447]
gi|424847976|ref|ZP_18272513.1| transcription-repair coupling factor [Enterococcus faecium R501]
gi|424859972|ref|ZP_18283947.1| transcription-repair coupling factor [Enterococcus faecium R499]
gi|424866347|ref|ZP_18290187.1| transcription-repair coupling factor [Enterococcus faecium R497]
gi|424952116|ref|ZP_18367154.1| transcription-repair coupling factor [Enterococcus faecium R496]
gi|424957030|ref|ZP_18371782.1| transcription-repair coupling factor [Enterococcus faecium R446]
gi|424960814|ref|ZP_18375295.1| transcription-repair coupling factor [Enterococcus faecium P1986]
gi|424965079|ref|ZP_18379106.1| transcription-repair coupling factor [Enterococcus faecium P1190]
gi|424967591|ref|ZP_18381284.1| transcription-repair coupling factor [Enterococcus faecium P1140]
gi|424970930|ref|ZP_18384404.1| transcription-repair coupling factor [Enterococcus faecium P1139]
gi|424974713|ref|ZP_18387930.1| transcription-repair coupling factor [Enterococcus faecium P1137]
gi|424977476|ref|ZP_18390487.1| transcription-repair coupling factor [Enterococcus faecium P1123]
gi|424979743|ref|ZP_18392577.1| transcription-repair coupling factor [Enterococcus faecium ERV99]
gi|424985876|ref|ZP_18398333.1| transcription-repair coupling factor [Enterococcus faecium ERV69]
gi|424986868|ref|ZP_18399270.1| transcription-repair coupling factor [Enterococcus faecium ERV38]
gi|424989909|ref|ZP_18402151.1| transcription-repair coupling factor [Enterococcus faecium ERV26]
gi|424995153|ref|ZP_18407050.1| transcription-repair coupling factor [Enterococcus faecium ERV168]
gi|424999144|ref|ZP_18410784.1| transcription-repair coupling factor [Enterococcus faecium ERV165]
gi|425001043|ref|ZP_18412579.1| transcription-repair coupling factor [Enterococcus faecium ERV161]
gi|425004986|ref|ZP_18416269.1| transcription-repair coupling factor [Enterococcus faecium ERV102]
gi|425006994|ref|ZP_18418146.1| transcription-repair coupling factor [Enterococcus faecium ERV1]
gi|425011305|ref|ZP_18422214.1| transcription-repair coupling factor [Enterococcus faecium E422]
gi|425012933|ref|ZP_18423690.1| transcription-repair coupling factor [Enterococcus faecium E417]
gi|425017675|ref|ZP_18428171.1| transcription-repair coupling factor [Enterococcus faecium C621]
gi|425020431|ref|ZP_18430736.1| transcription-repair coupling factor [Enterococcus faecium C497]
gi|425030235|ref|ZP_18435429.1| transcription-repair coupling factor [Enterococcus faecium C1904]
gi|425033017|ref|ZP_18438020.1| transcription-repair coupling factor [Enterococcus faecium 515]
gi|425036370|ref|ZP_18441133.1| transcription-repair coupling factor [Enterococcus faecium 514]
gi|425038382|ref|ZP_18443000.1| transcription-repair coupling factor [Enterococcus faecium 513]
gi|425041983|ref|ZP_18446355.1| transcription-repair coupling factor [Enterococcus faecium 511]
gi|425046802|ref|ZP_18450790.1| transcription-repair coupling factor [Enterococcus faecium 510]
gi|425048031|ref|ZP_18451956.1| transcription-repair coupling factor [Enterococcus faecium 509]
gi|425053674|ref|ZP_18457204.1| transcription-repair coupling factor [Enterococcus faecium 506]
gi|425061483|ref|ZP_18464709.1| transcription-repair coupling factor [Enterococcus faecium 503]
gi|427397650|ref|ZP_18890132.1| transcription-repair coupling factor [Enterococcus durans
FB129-CNAB-4]
gi|430821492|ref|ZP_19440099.1| transcription-repair coupling factor [Enterococcus faecium E0045]
gi|430827194|ref|ZP_19445358.1| transcription-repair coupling factor [Enterococcus faecium E0164]
gi|430830008|ref|ZP_19448077.1| transcription-repair coupling factor [Enterococcus faecium E0269]
gi|430832569|ref|ZP_19450612.1| transcription-repair coupling factor [Enterococcus faecium E0333]
gi|430847157|ref|ZP_19465004.1| transcription-repair coupling factor [Enterococcus faecium E1133]
gi|430861026|ref|ZP_19478618.1| transcription-repair coupling factor [Enterococcus faecium E1573]
gi|430906593|ref|ZP_19485028.1| transcription-repair coupling factor [Enterococcus faecium E1575]
gi|430964159|ref|ZP_19487607.1| transcription-repair coupling factor [Enterococcus faecium E1576]
gi|431014812|ref|ZP_19490354.1| transcription-repair coupling factor [Enterococcus faecium E1578]
gi|431216468|ref|ZP_19501219.1| transcription-repair coupling factor [Enterococcus faecium E1620]
gi|431239323|ref|ZP_19503626.1| transcription-repair coupling factor [Enterococcus faecium E1622]
gi|431265346|ref|ZP_19506048.1| transcription-repair coupling factor [Enterococcus faecium E1623]
gi|431312217|ref|ZP_19508867.1| transcription-repair coupling factor [Enterococcus faecium E1626]
gi|431560975|ref|ZP_19519607.1| transcription-repair coupling factor [Enterococcus faecium E1731]
gi|431747454|ref|ZP_19536248.1| transcription-repair coupling factor [Enterococcus faecium E2134]
gi|431749953|ref|ZP_19538683.1| transcription-repair coupling factor [Enterococcus faecium E2297]
gi|431756205|ref|ZP_19544843.1| transcription-repair coupling factor [Enterococcus faecium E2883]
gi|431766077|ref|ZP_19554573.1| transcription-repair coupling factor [Enterococcus faecium E4215]
gi|431768635|ref|ZP_19557069.1| transcription-repair coupling factor [Enterococcus faecium E1321]
gi|431771729|ref|ZP_19560106.1| transcription-repair coupling factor [Enterococcus faecium E1644]
gi|431774660|ref|ZP_19562965.1| transcription-repair coupling factor [Enterococcus faecium E2369]
gi|431777754|ref|ZP_19566005.1| transcription-repair coupling factor [Enterococcus faecium E2560]
gi|431780450|ref|ZP_19568629.1| transcription-repair coupling factor [Enterococcus faecium E4389]
gi|431783148|ref|ZP_19571270.1| transcription-repair coupling factor [Enterococcus faecium E6012]
gi|431784104|ref|ZP_19572149.1| transcription-repair coupling factor [Enterococcus faecium E6045]
gi|447913805|ref|YP_007395217.1| Transcription-repair coupling factor [Enterococcus faecium NRRL
B-2354]
gi|68195825|gb|EAN10261.1| Transcription-repair coupling factor [Enterococcus faecium DO]
gi|257814082|gb|EEV42840.1| transcription-repair coupling factor [Enterococcus faecium 1,230,933]
gi|257818238|gb|EEV45566.1| transcription-repair coupling factor [Enterococcus faecium 1,231,502]
gi|257828055|gb|EEV54681.1| transcription-repair coupling factor [Enterococcus faecium 1,231,410]
gi|257830549|gb|EEV57156.1| transcription-repair coupling factor [Enterococcus faecium 1,231,408]
gi|260074626|gb|EEW62947.1| transcription-repair coupling factor [Enterococcus faecium C68]
gi|260079171|gb|EEW66864.1| transcription-repair coupling factor [Enterococcus faecium TC 6]
gi|289163246|gb|EFD11092.1| transcription-repair coupling factor [Enterococcus faecium D344SRF]
gi|291587487|gb|EFF19371.1| transcription-repair coupling factor [Enterococcus faecium E1071]
gi|291592186|gb|EFF23804.1| transcription-repair coupling factor [Enterococcus faecium E1636]
gi|291596919|gb|EFF28137.1| transcription-repair coupling factor [Enterococcus faecium U0317]
gi|291604843|gb|EFF34321.1| transcription-repair coupling factor [Enterococcus faecium E1162]
gi|313589525|gb|EFR68370.1| transcription-repair coupling factor [Enterococcus faecium TX0133a01]
gi|313593312|gb|EFR72157.1| transcription-repair coupling factor [Enterococcus faecium TX0133B]
gi|313595635|gb|EFR74480.1| transcription-repair coupling factor [Enterococcus faecium TX0133A]
gi|313598169|gb|EFR77014.1| transcription-repair coupling factor [Enterococcus faecium TX0133C]
gi|313642411|gb|EFS06991.1| transcription-repair coupling factor [Enterococcus faecium TX0133a04]
gi|364092990|gb|EHM35305.1| transcription-repair coupling factor [Enterococcus faecium E4453]
gi|364093287|gb|EHM35570.1| transcription-repair coupling factor [Enterococcus faecium E4452]
gi|378939614|gb|AFC64686.1| Transcription-repair coupling factor [Enterococcus faecium Aus0004]
gi|388534984|gb|AFK60176.1| transcription-repair coupling factor [Enterococcus faecium DO]
gi|402918625|gb|EJX39297.1| transcription-repair coupling factor [Enterococcus faecium R501]
gi|402921220|gb|EJX41679.1| transcription-repair coupling factor [Enterococcus faecium S447]
gi|402921865|gb|EJX42283.1| transcription-repair coupling factor [Enterococcus faecium V689]
gi|402926050|gb|EJX46118.1| transcription-repair coupling factor [Enterococcus faecium R499]
gi|402927723|gb|EJX47658.1| transcription-repair coupling factor [Enterococcus faecium R496]
gi|402938827|gb|EJX57800.1| transcription-repair coupling factor [Enterococcus faecium R497]
gi|402944662|gb|EJX63060.1| transcription-repair coupling factor [Enterococcus faecium R446]
gi|402944959|gb|EJX63338.1| transcription-repair coupling factor [Enterococcus faecium P1190]
gi|402945751|gb|EJX64082.1| transcription-repair coupling factor [Enterococcus faecium P1986]
gi|402954081|gb|EJX71736.1| transcription-repair coupling factor [Enterococcus faecium P1140]
gi|402955670|gb|EJX73181.1| transcription-repair coupling factor [Enterococcus faecium P1137]
gi|402960423|gb|EJX77567.1| transcription-repair coupling factor [Enterococcus faecium P1139]
gi|402964959|gb|EJX81707.1| transcription-repair coupling factor [Enterococcus faecium ERV69]
gi|402965756|gb|EJX82446.1| transcription-repair coupling factor [Enterococcus faecium P1123]
gi|402968185|gb|EJX84679.1| transcription-repair coupling factor [Enterococcus faecium ERV99]
gi|402975697|gb|EJX91637.1| transcription-repair coupling factor [Enterococcus faecium ERV38]
gi|402978052|gb|EJX93817.1| transcription-repair coupling factor [Enterococcus faecium ERV168]
gi|402980102|gb|EJX95731.1| transcription-repair coupling factor [Enterococcus faecium ERV165]
gi|402980831|gb|EJX96411.1| transcription-repair coupling factor [Enterococcus faecium ERV26]
gi|402987655|gb|EJY02702.1| transcription-repair coupling factor [Enterococcus faecium ERV161]
gi|402988027|gb|EJY03056.1| transcription-repair coupling factor [Enterococcus faecium ERV102]
gi|402995981|gb|EJY10393.1| transcription-repair coupling factor [Enterococcus faecium ERV1]
gi|402997470|gb|EJY11791.1| transcription-repair coupling factor [Enterococcus faecium E422]
gi|403002272|gb|EJY16265.1| transcription-repair coupling factor [Enterococcus faecium E417]
gi|403003814|gb|EJY17669.1| transcription-repair coupling factor [Enterococcus faecium C1904]
gi|403003883|gb|EJY17732.1| transcription-repair coupling factor [Enterococcus faecium C621]
gi|403009237|gb|EJY22696.1| transcription-repair coupling factor [Enterococcus faecium C497]
gi|403011424|gb|EJY24734.1| transcription-repair coupling factor [Enterococcus faecium 515]
gi|403015005|gb|EJY27953.1| transcription-repair coupling factor [Enterococcus faecium 514]
gi|403019629|gb|EJY32216.1| transcription-repair coupling factor [Enterococcus faecium 513]
gi|403023139|gb|EJY35425.1| transcription-repair coupling factor [Enterococcus faecium 510]
gi|403025005|gb|EJY37117.1| transcription-repair coupling factor [Enterococcus faecium 511]
gi|403029334|gb|EJY41095.1| transcription-repair coupling factor [Enterococcus faecium 506]
gi|403031757|gb|EJY43347.1| transcription-repair coupling factor [Enterococcus faecium 509]
gi|403041231|gb|EJY52259.1| transcription-repair coupling factor [Enterococcus faecium 503]
gi|404455524|gb|EKA02371.1| transcription-repair coupling factor [Enterococcus sp. GMD4E]
gi|404458991|gb|EKA05364.1| transcription-repair coupling factor [Enterococcus sp. GMD3E]
gi|404464425|gb|EKA09966.1| transcription-repair coupling factor [Enterococcus sp. GMD2E]
gi|404470446|gb|EKA15079.1| transcription-repair coupling factor [Enterococcus sp. GMD1E]
gi|410733764|gb|EKQ75686.1| transcription-repair coupling factor [Enterococcus sp. GMD5E]
gi|425721961|gb|EKU84861.1| transcription-repair coupling factor [Enterococcus durans
FB129-CNAB-4]
gi|430438408|gb|ELA48842.1| transcription-repair coupling factor [Enterococcus faecium E0045]
gi|430444374|gb|ELA54229.1| transcription-repair coupling factor [Enterococcus faecium E0164]
gi|430479326|gb|ELA56582.1| transcription-repair coupling factor [Enterococcus faecium E0269]
gi|430479855|gb|ELA57065.1| transcription-repair coupling factor [Enterococcus faecium E0333]
gi|430537830|gb|ELA78145.1| transcription-repair coupling factor [Enterococcus faecium E1133]
gi|430550615|gb|ELA90398.1| transcription-repair coupling factor [Enterococcus faecium E1573]
gi|430554551|gb|ELA94153.1| transcription-repair coupling factor [Enterococcus faecium E1575]
gi|430555220|gb|ELA94764.1| transcription-repair coupling factor [Enterococcus faecium E1576]
gi|430559636|gb|ELA98984.1| transcription-repair coupling factor [Enterococcus faecium E1578]
gi|430569833|gb|ELB08813.1| transcription-repair coupling factor [Enterococcus faecium E1620]
gi|430571930|gb|ELB10802.1| transcription-repair coupling factor [Enterococcus faecium E1622]
gi|430576181|gb|ELB14850.1| transcription-repair coupling factor [Enterococcus faecium E1623]
gi|430579166|gb|ELB17702.1| transcription-repair coupling factor [Enterococcus faecium E1626]
gi|430589816|gb|ELB27916.1| transcription-repair coupling factor [Enterococcus faecium E1731]
gi|430606281|gb|ELB43639.1| transcription-repair coupling factor [Enterococcus faecium E2134]
gi|430610904|gb|ELB48034.1| transcription-repair coupling factor [Enterococcus faecium E2297]
gi|430615660|gb|ELB52604.1| transcription-repair coupling factor [Enterococcus faecium E2883]
gi|430627147|gb|ELB63664.1| transcription-repair coupling factor [Enterococcus faecium E4215]
gi|430628857|gb|ELB65287.1| transcription-repair coupling factor [Enterococcus faecium E1321]
gi|430632719|gb|ELB68920.1| transcription-repair coupling factor [Enterococcus faecium E1644]
gi|430633545|gb|ELB69700.1| transcription-repair coupling factor [Enterococcus faecium E2369]
gi|430639047|gb|ELB74938.1| transcription-repair coupling factor [Enterococcus faecium E2560]
gi|430639862|gb|ELB75717.1| transcription-repair coupling factor [Enterococcus faecium E4389]
gi|430645821|gb|ELB81323.1| transcription-repair coupling factor [Enterococcus faecium E6012]
gi|430650145|gb|ELB85499.1| transcription-repair coupling factor [Enterococcus faecium E6045]
gi|445189514|gb|AGE31156.1| Transcription-repair coupling factor [Enterococcus faecium NRRL
B-2354]
Length = 1173
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/555 (40%), Positives = 360/555 (64%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYINHLENPMEM 706
LP Y+ +E+
Sbjct: 1029 LPETYVADQRQKIEI 1043
>gi|456989139|gb|EMG23989.1| transcription-repair coupling factor [Leptospira interrogans serovar
Copenhageni str. LT2050]
Length = 1099
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/623 (39%), Positives = 391/623 (62%), Gaps = 21/623 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRMLYRYN 212
L+ GDYVVH G+GKF +K + +++ +EY+ G + +P+ Q S ++ RY
Sbjct: 433 LKEGDYVVHIHHGVGKF--LKIERTSAGGKERDFLKLEYSGGDSLFVPLDQIS-LVQRYI 489
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E+ R +L K + W++ K + + A++ + DL+++Y +RLK + +P +
Sbjct: 490 GGTESPRLDSLGK----STWKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQ 545
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG
Sbjct: 546 EEFEAEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAG 604
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
+Q M+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++V
Sbjct: 605 RQIMMLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVV 663
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH++L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALT
Sbjct: 664 GTHAILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALT 723
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G R+ S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++
Sbjct: 724 GIRELSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNY 783
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L + P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+
Sbjct: 784 LSKLVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRA 843
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +
Sbjct: 844 DLFGLSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMR 903
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININP 690
D+ IRG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N
Sbjct: 904 DLEIRGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNF 960
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYV 748
+P YI+ +E + E A +D+ + + + ++G+ P + ILL+K +
Sbjct: 961 FIPETYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--I 1016
Query: 749 RRMAADIGITKIYASGKMVGMKT 771
R +A+++G + + MK+
Sbjct: 1017 RTLASNLGFEFVTEMKDEIKMKS 1039
>gi|425059177|ref|ZP_18462527.1| transcription-repair coupling factor [Enterococcus faecium 504]
gi|403036242|gb|EJY47599.1| transcription-repair coupling factor [Enterococcus faecium 504]
Length = 1173
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/555 (40%), Positives = 360/555 (64%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INKLGGS-EWAKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYINHLENPMEM 706
LP Y+ +E+
Sbjct: 1029 LPETYVADQRQKIEI 1043
>gi|293553692|ref|ZP_06674316.1| transcription-repair coupling factor [Enterococcus faecium E1039]
gi|431449126|ref|ZP_19513967.1| transcription-repair coupling factor [Enterococcus faecium E1630]
gi|431761117|ref|ZP_19549704.1| transcription-repair coupling factor [Enterococcus faecium E3346]
gi|291602267|gb|EFF32495.1| transcription-repair coupling factor [Enterococcus faecium E1039]
gi|430585518|gb|ELB23803.1| transcription-repair coupling factor [Enterococcus faecium E1630]
gi|430622491|gb|ELB59212.1| transcription-repair coupling factor [Enterococcus faecium E3346]
Length = 1173
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/555 (40%), Positives = 360/555 (64%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INKLGGS-EWAKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYINHLENPMEM 706
LP Y+ +E+
Sbjct: 1029 LPETYVADQRQKIEI 1043
>gi|269215535|ref|ZP_06159389.1| transcription-repair coupling factor [Slackia exigua ATCC 700122]
gi|269131022|gb|EEZ62097.1| transcription-repair coupling factor [Slackia exigua ATCC 700122]
Length = 1150
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 245/613 (39%), Positives = 372/613 (60%), Gaps = 18/613 (2%)
Query: 152 YSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI-EYVFIEYADG-MAKLPVKQASRMLY 209
+ + GDYVVH G+ F G+ V++D + +Y+ +EYA+ +PV+Q R +
Sbjct: 483 FPFKPGDYVVHAAHGVAFFRGL---VRQDVGGTMRDYLQLEYAENDKLFVPVEQLDR-IT 538
Query: 210 RYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKN 268
RY P E PR L++L +T+ W R +K + + +++ DL+++Y R Y P N
Sbjct: 539 RYVGP-EGSSPR-LTRL-NTSDWSRAMSKARASTKQLAFDLVDVYTRRSSVPGFRYSPDN 595
Query: 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328
P E FPY TPDQ A +V+ D+ + PMDRL+CGDVGFGKTEVALRA F V
Sbjct: 596 PWQKEMEDAFPYAETPDQLSAIAEVKADM-QSSRPMDRLVCGDVGFGKTEVALRAAFKAV 654
Query: 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 388
KQ MVL PT +LA+QH+ +RF + + V +LSRF++ AE++E L G ++
Sbjct: 655 QDDKQVMVLCPTTILAQQHYATFKDRFEPF-HVSVEVLSRFRTPAEQKETLAGFADGTVD 713
Query: 389 IIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL 448
++VGTH LL V +LGL+++DEEQRFGV KE++ + + +DVLTLSATPIPRTL +
Sbjct: 714 VLVGTHRLLSRDVNPRDLGLVIIDEEQRFGVGHKEQLKNLREHIDVLTLSATPIPRTLQM 773
Query: 449 ALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 508
+L+G RD SLI TPP ER P++ H+ + + V AI+ E+ RGGQV+YV R++ +E+
Sbjct: 774 SLSGVRDTSLILTPPDERRPVEVHVGEWDPDIVSDAIRREMQRGGQVYYVSNRVRTIEDA 833
Query: 509 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 568
+D ++ A P I AHG+ +LE ME FA GAI +L+ T I+ESG+D + NT+++
Sbjct: 834 LDHVRDAAPEARIGAAHGKMGKEELEAVMEDFAAGAIDVLVATTIIESGIDNPHTNTLVI 893
Query: 569 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQL 628
+D Q+ GLAQ+YQL+GRVGR+ +A+AY +P + L+++A RL A++E RELG G Q+
Sbjct: 894 EDSQRLGLAQMYQLKGRVGRSSLQAYAYFMFPSEVPLTEEATARLQAIDEHRELGSGMQV 953
Query: 629 AEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDINI 688
A +D+ IRG G++ G +Q+G V VG DLF +ML + + E + DI +
Sbjct: 954 AMRDLEIRGAGSLLGAEQSGSVSAVGFDLFAQMLATAFNDAREGRPLDDRAPQALSDITL 1013
Query: 689 NPRLP-SEYI--NHLENPMEMVNEAEKAAEQDI-WCLMQFTESLRRQYGKEPYSMEILLK 744
N +P S +I +++ + E V +AA D + ++ +G+ P L+
Sbjct: 1014 N--VPGSAFISEDYVPDTDERVLLYRRAAFADTPGAVDDLAAAIVEAHGEMPEECLALIT 1071
Query: 745 KLYVRRMAADIGI 757
+ +R + G+
Sbjct: 1072 RARIRAWCGEHGV 1084
>gi|269798420|ref|YP_003312320.1| transcription-repair coupling factor [Veillonella parvula DSM 2008]
gi|269095049|gb|ACZ25040.1| transcription-repair coupling factor [Veillonella parvula DSM 2008]
Length = 1098
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 247/546 (45%), Positives = 353/546 (64%), Gaps = 22/546 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYRY 211
L GDYVVH GIGK++G+K + + +Y+ I YA G KL P + L +Y
Sbjct: 425 LTPGDYVVHSMHGIGKYIGLK--TIETEGIHRDYIEIAYA-GTDKLFLPANNLDQ-LQKY 480
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPA 270
+ NE PR + K+ W + TK K +I + L+E+Y R + + P P
Sbjct: 481 -IGNEGDVPR-IHKMGGRD-WAKVVTKAKKSIDDLADKLVEIYAQREITEGFAFLPDQPW 537
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF FPYE T DQ +A +++ + ER PMDRL+ GDVGFGKTEVA+RAIF V +
Sbjct: 538 QQEFEDAFPYEETEDQLQATAEIKESM-ERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMS 596
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ VL PT VLA+QHF RF+ + +KV +L+RF++ +EK++ L ++ G ++I+
Sbjct: 597 GKQVAVLVPTTVLAQQHFQTFLNRFAPF-GVKVDVLNRFRTTSEKKQILKGVEDGSIDIL 655
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTHSLL +VV+ +LG+LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++L
Sbjct: 656 IGTHSLLNKKVVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSL 715
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G R+ S+I+TPP ERLP++T++ + + AIK EL RGGQV++V R+ + +
Sbjct: 716 VGVREMSVINTPPEERLPVQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGE 775
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L+ A PG+ A+AHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+ D
Sbjct: 776 LLESALPGLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYD 835
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLA 629
+ GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+LA
Sbjct: 836 ADRLGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-ILSEAAEKRLKAIEEFTELGAGFKLA 894
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G + G QQ G++ +VG ++ ML E+++K K V+ D++I+
Sbjct: 895 MRDLEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQN--------KEVERDVSID 946
Query: 690 PRLPSE 695
P + E
Sbjct: 947 PAIDLE 952
>gi|222056789|ref|YP_002539151.1| transcription-repair coupling factor [Geobacter daltonii FRC-32]
gi|221566078|gb|ACM22050.1| transcription-repair coupling factor [Geobacter daltonii FRC-32]
Length = 1169
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 249/617 (40%), Positives = 377/617 (61%), Gaps = 20/617 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYRY 211
L+ GDY+VH G+G + G++ S + +++ +EYA G KL PV + + ++ RY
Sbjct: 508 LKPGDYMVHIDFGVGIYRGLQH--LTFSGMEGDFLLLEYA-GADKLYLPVDRIN-LVQRY 563
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
+ E P + KL WE+ K K + AIQ+M +L+++Y R ++ + P +
Sbjct: 564 -VGAEGVEPH-VDKLGGA-GWEKTKAKARAAIQEMAGELLKIYAARQVEEGHAFSPPDEL 620
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF A F YE TPDQ+ A DV D+ E + PMDRLICGDVG+GKTEVALR F V
Sbjct: 621 YQEFEAAFAYEETPDQQAAIEDVLLDM-ESKKPMDRLICGDVGYGKTEVALRGAFKAVMD 679
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ VL PT VLA+QH + S R YP +KV +LSRF++ E++E ++ +K+G ++++
Sbjct: 680 GKQVAVLVPTTVLAQQHLETFSARLKSYP-VKVEMLSRFRTPKEQKEIIEGVKNGTVDVV 738
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH LL +V+ +LGLL++DEEQRFGV KE++ ++ VD++TL+ATPIPRTLY++L
Sbjct: 739 IGTHRLLQKDIVFKDLGLLIIDEEQRFGVTHKERLKKYRAVVDIMTLTATPIPRTLYMSL 798
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+I TPP +RL IKT ++ S + + A+ EL RGGQ+F+V R++ + +
Sbjct: 799 MGIRDLSIIDTPPVDRLAIKTFVARTSDDLIREAVLRELRRGGQIFFVHNRVQTIGAMAE 858
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
LQ+ P IA+ HGQ ++LE M F G +L+CT I+ESGLDI ANT+IV
Sbjct: 859 HLQRIVPEAKIAVGHGQMEEKELERVMLSFMHGESNLLLCTTIIESGLDIPTANTLIVNR 918
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+QLYQLRGRVGR+ + A+AYL P + +S A ERL ++E ELG GF++A
Sbjct: 919 ADTFGLSQLYQLRGRVGRSKQRAYAYLLIPGEGAISADARERLKIIQELTELGAGFRIAT 978
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININ 689
D+ IRG G + G +Q+GD+ VG +L+ E+L E++ ++ E V +I + I
Sbjct: 979 HDLEIRGAGDLLGARQSGDIAAVGFELYTELLEEAIRQLKGEELAERV---EPEIKLRIP 1035
Query: 690 PRLPSEYINHLENPMEMVNEAEKA-AEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYV 748
+P +Y+ + + +A +E+D+ +M L ++GK P + L++ + +
Sbjct: 1036 AFIPEDYVREPNQRLIIYKRLTQATSEEDVAEIMG---ELVDRFGKLPLAALYLVEVMKL 1092
Query: 749 RRMAADIGITKIYASGK 765
R + + +I GK
Sbjct: 1093 RVALKAMLVKEIEFDGK 1109
>gi|430835076|ref|ZP_19453075.1| transcription-repair coupling factor [Enterococcus faecium E0679]
gi|430484744|gb|ELA61706.1| transcription-repair coupling factor [Enterococcus faecium E0679]
Length = 1173
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/555 (40%), Positives = 360/555 (64%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INKLGGS-EWAKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYINHLENPMEM 706
LP Y+ +E+
Sbjct: 1029 LPETYVADQRQKIEI 1043
>gi|294618628|ref|ZP_06698167.1| transcription-repair coupling factor [Enterococcus faecium E1679]
gi|431668796|ref|ZP_19524158.1| transcription-repair coupling factor [Enterococcus faecium E1904]
gi|291595147|gb|EFF26485.1| transcription-repair coupling factor [Enterococcus faecium E1679]
gi|430599962|gb|ELB37644.1| transcription-repair coupling factor [Enterococcus faecium E1904]
Length = 1173
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/555 (40%), Positives = 360/555 (64%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYINHLENPMEM 706
LP Y+ +E+
Sbjct: 1029 LPETYVADQRQKIEI 1043
>gi|257886022|ref|ZP_05665675.1| transcription-repair coupling factor [Enterococcus faecium 1,231,501]
gi|257821878|gb|EEV49008.1| transcription-repair coupling factor [Enterococcus faecium 1,231,501]
Length = 1173
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/555 (40%), Positives = 360/555 (64%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVATTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYINHLENPMEM 706
LP Y+ +E+
Sbjct: 1029 LPETYVADQRQKIEI 1043
>gi|456825200|gb|EMF73596.1| transcription-repair coupling factor [Leptospira interrogans serovar
Canicola str. LT1962]
Length = 1099
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 248/623 (39%), Positives = 391/623 (62%), Gaps = 21/623 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRMLYRYN 212
L+ GDYVVH G+GKF +K + +++ +EY+ G + +P+ Q S ++ RY
Sbjct: 433 LKEGDYVVHIHHGVGKF--LKIERTSAGGKERDFLKLEYSGGDSLFVPLDQIS-LVQRYI 489
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E+ R +L K + W++ K + + A++ + DL+++Y +RLK + +P +
Sbjct: 490 GGTESPRLDSLGK----STWKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQ 545
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG
Sbjct: 546 EEFEAEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAG 604
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
+Q M+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++V
Sbjct: 605 RQIMMLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVV 663
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH++L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALT
Sbjct: 664 GTHAILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALT 723
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G R+ S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++
Sbjct: 724 GIRELSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNY 783
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L + P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+
Sbjct: 784 LSKLVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRA 843
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +
Sbjct: 844 DLFGLSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMR 903
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININP 690
D+ IRG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N
Sbjct: 904 DLEIRGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNF 960
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYV 748
+P YI+ +E + E A +D+ + + + ++G+ P + ILL+K +
Sbjct: 961 FIPETYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--I 1016
Query: 749 RRMAADIGITKIYASGKMVGMKT 771
R +A+++G + + MK+
Sbjct: 1017 RTLASNLGFEFVTEMKDEIKMKS 1039
>gi|431387263|ref|ZP_19511626.1| transcription-repair coupling factor [Enterococcus faecium E1627]
gi|431512503|ref|ZP_19515930.1| transcription-repair coupling factor [Enterococcus faecium E1634]
gi|430580820|gb|ELB19286.1| transcription-repair coupling factor [Enterococcus faecium E1627]
gi|430586422|gb|ELB24679.1| transcription-repair coupling factor [Enterococcus faecium E1634]
Length = 1173
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/555 (40%), Positives = 360/555 (64%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYINHLENPMEM 706
LP Y+ +E+
Sbjct: 1029 LPETYVADQRQKIEI 1043
>gi|299143244|ref|ZP_07036324.1| transcription-repair coupling factor [Peptoniphilus sp. oral taxon
386 str. F0131]
gi|298517729|gb|EFI41468.1| transcription-repair coupling factor [Peptoniphilus sp. oral taxon
386 str. F0131]
Length = 1161
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 238/610 (39%), Positives = 379/610 (62%), Gaps = 16/610 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRMLYRY 211
L GDYVVH+ GIGK++G K +VQ V +Y+ IEY + LP+ ++ ++Y+Y
Sbjct: 494 LNIGDYVVHEVHGIGKYIGTKRLEVQ---NVKKDYIVIEYKGEDKLFLPI-ESLNLIYKY 549
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E K P+ ++KL ++ W + K+K K +++ M DL++LY R + K + ++
Sbjct: 550 -VGSEGKAPK-VNKL-NSLEWSKTKSKAKKSVEDMAEDLIKLYAKRQEVKGFAFSEDTQW 606
Query: 272 A-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF F YE T Q ++ +++ D+ + + PMDRL+C DVG+GKTEVA+RA F +
Sbjct: 607 QREFEDAFEYEETQGQLESSEEIKNDM-QSDKPMDRLLCADVGYGKTEVAIRAAFKAIMD 665
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH++ + ERF +P +K+ LL RF+SK ++++ L+ +K G ++II
Sbjct: 666 GKQVAFLVPTTILAQQHYNTMIERFKDFP-VKIALLCRFRSKMQQKKDLEDLKKGFVDII 724
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH +L VV+ +LGLLV+DEEQRFGV+ KEK+ K +VD LTL+ATPIPRTL +++
Sbjct: 725 IGTHRILSKDVVFKDLGLLVIDEEQRFGVRHKEKLKILKENVDTLTLTATPIPRTLQMSM 784
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+I PP ER P++T++ ++ + AI E++RGGQV++V ++ +E +
Sbjct: 785 VGIRDMSVIEEPPEERFPVQTYVLEYNDMMIREAILKEIERGGQVYFVYNKVANIENKLI 844
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L+ P IAHGQ + LE+TM F +L+C+ I+E+G+DIQNANTIIV D
Sbjct: 845 ELRNLVPEAKFNIAHGQMSEQLLEDTMISFINHEFDVLLCSTIIETGMDIQNANTIIVSD 904
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGR+GR++K A+AY Y LS+ A +RL +++E E G G+++A
Sbjct: 905 ANRLGLSQLYQLRGRIGRSNKIAYAYFTYGRDISLSEIAQKRLKSIKEFTEFGSGYKIAL 964
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G+I G +Q G + ++G DL+ + L ++LSK+ V ID+ ++
Sbjct: 965 RDLEIRGSGSILGSRQHGHIDSIGYDLYIKYLRDTLSKMKGEEV--KEEDDTTIDVKVDS 1022
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+P+ YI N +E+ + D + + L ++ PY + L+ +R
Sbjct: 1023 YIPASYIEDENNRIEIYKKIATIESDDDYS--DLVDELIDRFSDIPYQVSNLMDISLIRY 1080
Query: 751 MAADIGITKI 760
MA ++G+ I
Sbjct: 1081 MAREVGVKSI 1090
>gi|229015456|ref|ZP_04172457.1| Transcription-repair-coupling factor [Bacillus cereus AH1273]
gi|228745840|gb|EEL95841.1| Transcription-repair-coupling factor [Bacillus cereus AH1273]
Length = 1176
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 242/614 (39%), Positives = 382/614 (62%), Gaps = 26/614 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENIV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYS 738
+V+ID+ ++ LP YI+ + + M + + I + + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQE 1075
Query: 739 MEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1076 VGYLLQIANIKVLA 1089
>gi|313207139|ref|YP_004046316.1| transcription-repair coupling factor [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|383486451|ref|YP_005395363.1| transcription-repair coupling factor [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|312446455|gb|ADQ82810.1| transcription-repair coupling factor [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|380461136|gb|AFD56820.1| transcription-repair coupling factor [Riemerella anatipestifer ATCC
11845 = DSM 15868]
Length = 1119
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/679 (37%), Positives = 390/679 (57%), Gaps = 38/679 (5%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVF-IEYADGMAKLPVKQASRML 208
D SL+ GDY+ H GIGKF+G+ V+ ++ + F + Y +G A +
Sbjct: 430 DLMSLKVGDYIAHIDHGIGKFMGL---VKVNNGGKTQECFKLTYKNGDLLYVSIHALHKI 486
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PK 267
+YN + TLSK+ + +W+ K K K ++++ DL++LY R K Y P
Sbjct: 487 SKYN--GAEGKEITLSKIG-SPSWKNLKNKTKAKVKQIAFDLIKLYAKRKTAKGFAYTPD 543
Query: 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
E A F YE TPDQ+KA LDV+RD+ E +T MDRL+CGDVGFGKTEVA+RA F
Sbjct: 544 TYLQNELEASFLYEDTPDQEKATLDVKRDM-EADTIMDRLVCGDVGFGKTEVAIRAAFKA 602
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
+ GKQ VL PT +LA QH+ +ER +P + + L+RF++ +K E L+ + G +
Sbjct: 603 ATDGKQVAVLVPTTILAFQHYRSFAERLKDFP-VNISYLNRFRTAKQKRETLEKLAEGKI 661
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+II+GTH L +V + +LGLL++DEE +FGV K+K+ + K ++D LTL+ATPIPRTL
Sbjct: 662 DIIIGTHQLASDKVKFKDLGLLIIDEEHKFGVSVKDKLKTLKANIDTLTLTATPIPRTLQ 721
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+L RD S+I TPPP R P++T L F +E + AI YEL R GQV+++ RI L++
Sbjct: 722 FSLMAARDLSVIKTPPPNRQPVETQLIGFDEEIIRDAISYELQRDGQVYFINNRIDNLKD 781
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+Q+ P + HGQ +QLEE + F +G +L+ T IVESG+D+ NANTI
Sbjct: 782 IAGMIQRLVPDARVITGHGQMDGKQLEENILDFMEGRYDVLVSTTIVESGVDVPNANTIF 841
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ D Q+FG+A ++Q+RGRVGR++++A YL P +++ A +RL A+E+ +LG GFQ
Sbjct: 842 INDAQRFGMADVHQMRGRVGRSNRKAFCYLITPPFDMVTSDARKRLEAIEQFSDLGSGFQ 901
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY-------- 679
+A KD+ IRG G + G +Q+G + +G + + +++ E+L ++ +
Sbjct: 902 IAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKIMQEALEELQNDAEFESLFENEADRKK 961
Query: 680 -----KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAE-QDIWCLMQFTESLRRQYG 733
K V ID ++ LP Y++ E + + +K AE + L +F L ++G
Sbjct: 962 LFKSSKDVNIDTDLELMLPDSYVSSTEERLSLY---QKLAEINNKEELKRFEAELEDRFG 1018
Query: 734 KEPYSMEILLKKLYVRRMAADIGITKIYA-SGKMVG-MKTNMNKKV-----FKMMIDSMT 786
P LLK + ++ +AA IG KI +G ++G +N K FK +I ++
Sbjct: 1019 SLPEEAINLLKSVELKWLAAAIGFEKIVMKNGILLGYFPSNPQDKFYQTEKFKKIIQYLS 1078
Query: 787 SEVHRNSL----TFEGDQI 801
+ SL + EG+Q+
Sbjct: 1079 QNPQKASLKEKHSAEGNQL 1097
>gi|334134086|ref|ZP_08507615.1| transcription-repair coupling factor [Paenibacillus sp. HGF7]
gi|333608433|gb|EGL19731.1| transcription-repair coupling factor [Paenibacillus sp. HGF7]
Length = 1173
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 244/618 (39%), Positives = 379/618 (61%), Gaps = 18/618 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIGK+VGI + + +Y+ I YA G +P+ Q ++ +Y
Sbjct: 488 LKVGDYVVHVNHGIGKYVGI--GTLEVGGIHKDYLHIVYAGGDKLSVPIDQID-LIQKY- 543
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ +E K P+ + KL W R K K + +++ + DL++LY R + + A
Sbjct: 544 VGSEEKEPK-IYKLGGAD-WNRVKNKVRTSVKDIADDLIKLYADRQATTGYGFSSDSAYQ 601
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF + FPY+ T DQ +A ++++D+ E+ PMDRL+CGDVG+GKTEVA+RA F G
Sbjct: 602 QEFESMFPYDETTDQLRAIGEIKKDM-EKPRPMDRLLCGDVGYGKTEVAIRAAFKAAIDG 660
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT +LA+QH++ ERFS YP + +LSRF+SK E+ E +K G ++I++
Sbjct: 661 KQVAVLVPTTILAQQHYETFRERFSGYP-FNIQVLSRFRSKKEQNETTKGVKAGTVDIVI 719
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL + + +LGLL+VDEEQRFGV KEK+ K +VDVLTL+ATPIPRTL++++
Sbjct: 720 GTHRLLSQDLKFKDLGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMSML 779
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T++ +S V AI+ EL R GQV+++ R++G+ + +
Sbjct: 780 GVRDLSVIETPPENRFPVQTYVLEYSTTLVREAIERELAREGQVYFLFNRVQGINQMAEQ 839
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+ P + +AHGQ ++LE+T+ F G +L+ T+I+E+G+DI N NT+IV D
Sbjct: 840 ISMLVPEARVTVAHGQMSEQELEKTILDFLDGEFDVLVSTSIIETGVDIPNVNTLIVHDA 899
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +
Sbjct: 900 DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLNEVAEKRLQAIKEFTELGSGFKIAMR 959
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKS--VQIDIN 687
D+ IRG G + G +Q G + +VG DL+ +ML E ++ K++ + P K Q+D++
Sbjct: 960 DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLSEEIAKRKLELDGEQAEPEKEWITQLDLH 1019
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQ-FTESLRRQYGKEPYSMEILLKKL 746
++ LPS+YI + M+ + +K A + + E L ++G P ++ LL
Sbjct: 1020 LDAYLPSDYIY---DSMQKIEIYKKVANIRSFAEAEDLDEELVDRFGDLPPAVSNLLAVA 1076
Query: 747 YVRRMAADIGITKIYASG 764
++ A+ I I G
Sbjct: 1077 RLKVYGAEYKIESISQKG 1094
>gi|365960705|ref|YP_004942272.1| transcription-repair coupling factor [Flavobacterium columnare ATCC
49512]
gi|365737386|gb|AEW86479.1| transcription-repair coupling factor [Flavobacterium columnare ATCC
49512]
Length = 1117
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/631 (38%), Positives = 370/631 (58%), Gaps = 28/631 (4%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
SL GDYV H GIGKF G+ K V+ + I+ + YAD + + +Y
Sbjct: 435 SLTVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLI---YADNDIVYVSIHSLHKISKY 491
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
N + T P + KL + AW+ K K K ++ + +L++LY R K + P +
Sbjct: 492 NGKDGT--PPKIYKLG-SGAWKALKQKTKARVKHIAFNLIQLYAKRRLDKGYAFAPDSYL 548
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E + F YE TPDQ KA DV+ D+ E E PMDRL+CGDVGFGKTEVA+RA F V
Sbjct: 549 QHELESSFIYEDTPDQLKATQDVKADM-ENERPMDRLVCGDVGFGKTEVAIRAAFKAVDN 607
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
KQ +L PT +LA QHF R P + + L+RF++ +K E L ++ G L+II
Sbjct: 608 SKQVAILVPTTILAYQHFRTFKSRLKDLP-VNISYLNRFRTAKQKSEILKDLESGKLDII 666
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ V + +LGLL++DEEQ+FGV K+++ + +VD LTL+ATPIPRTL +L
Sbjct: 667 IGTHQLVNKNVKFKDLGLLIIDEEQKFGVNVKDRLKTIATNVDTLTLTATPIPRTLQFSL 726
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S+I+TPPP R PI+T + F++E + AI YE++RGGQ++++ R++ ++E
Sbjct: 727 MAARDLSVINTPPPNRYPIETQVIGFNEEIIRDAISYEIERGGQIYFINNRLENIKEIAG 786
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P + I HGQ +QLEE M F +G +L+ T I+ESGLD+ NANTI + +
Sbjct: 787 MIQRLVPNAKVGIGHGQMEGKQLEEIMLSFMEGEFDVLVATTIIESGLDVPNANTIFINN 846
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A Y P S+++++A +R+ AL + ELG GF +A
Sbjct: 847 ANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSVMTEEARKRIQALTQFSELGSGFNIAM 906
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV----------DEHCVISVPY- 679
KD+ IRG G + G +Q+G + +G + + +++ E++ ++ +E + + Y
Sbjct: 907 KDLEIRGAGDLLGGEQSGFINEIGFETYQKIMQEAIEELKENEFKDLYPEESNIETKEYV 966
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAE--KAAEQDIWCLMQFTESLRRQYGKEPY 737
K +QID + P EYIN + + + NE K E+ L ++ + L ++GK P
Sbjct: 967 KDLQIDTDFELLFPDEYINSVTERLSLYNELAIIKTEEK----LQEYQKQLEDRFGKLPK 1022
Query: 738 SMEILLKKLYVRRMAADIGITK-IYASGKMV 767
S LL L ++ A +GI K + GK+V
Sbjct: 1023 SGLALLDSLRLKWKATHLGIEKLVLKQGKLV 1053
>gi|257899966|ref|ZP_05679619.1| transcription-repair coupling factor [Enterococcus faecium Com15]
gi|257837878|gb|EEV62952.1| transcription-repair coupling factor [Enterococcus faecium Com15]
Length = 1173
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/555 (40%), Positives = 360/555 (64%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYINHLENPMEM 706
LP Y+ +E+
Sbjct: 1029 LPETYVEDQRQKIEI 1043
>gi|455789008|gb|EMF40949.1| transcription-repair coupling factor [Leptospira interrogans
serovar Lora str. TE 1992]
Length = 878
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 247/623 (39%), Positives = 391/623 (62%), Gaps = 21/623 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRMLYRYN 212
L+ GDYVVH G+G+F +K + +++ +EY+ G + +P+ Q S ++ RY
Sbjct: 212 LKEGDYVVHIHHGVGRF--LKIERTSAGGKERDFLKLEYSGGDSLFVPLDQIS-LVQRYI 268
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E+ R +L K + W++ K + + A++ + DL+++Y +RLK + +P +
Sbjct: 269 GGTESPRLDSLGK----STWKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQ 324
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG
Sbjct: 325 EEFEAEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAG 383
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
+Q M+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++V
Sbjct: 384 RQIMMLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVV 442
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH++L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALT
Sbjct: 443 GTHAILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALT 502
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G R+ S+I+TPP R ++T++ + + AI+ E+ RGGQVFY+ R++ +EE ++
Sbjct: 503 GIRELSIIATPPKNRQSVETYVLEEDDDLISDAIRNEIQRGGQVFYLYNRVETIEEETNY 562
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L + P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+
Sbjct: 563 LSKLVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRA 622
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +
Sbjct: 623 DLFGLSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMR 682
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININP 690
D+ IRG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N
Sbjct: 683 DLEIRGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNF 739
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYV 748
+P YI+ +E + E A +D+ + + + ++G+ P + ILL+K +
Sbjct: 740 FIPETYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--I 795
Query: 749 RRMAADIGITKIYASGKMVGMKT 771
R +A+++G + + MK+
Sbjct: 796 RTLASNLGFEFVTEMKDEIKMKS 818
>gi|262198049|ref|YP_003269258.1| transcription-repair coupling factor [Haliangium ochraceum DSM 14365]
gi|262081396|gb|ACY17365.1| transcription-repair coupling factor [Haliangium ochraceum DSM 14365]
Length = 1257
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 257/652 (39%), Positives = 373/652 (57%), Gaps = 55/652 (8%)
Query: 143 GGFSYKVDPYSLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVP-IEYVFIEYADGMAKLP 200
GG S D L GD+VVH GIG + G+ K V +T P ++++ IEY G LP
Sbjct: 554 GGIS---DFSQLAPGDHVVHAMHGIGLYRGLAKLPVS--ATGPAVDFLHIEYRGGQFYLP 608
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V + + RY + E PR L KL T W++ + K ++ + +L++LY R Q
Sbjct: 609 VYRLGEV-SRY-VGAEGHAPR-LDKLGGVT-WQKARKKASAQVKALAEELLKLYAQRAAQ 664
Query: 261 KRPPYPKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
YP + + EF A F +E TPDQ++A +V D+ E E PMDRL+CGDVG+GKTEV
Sbjct: 665 PGHAYPSSDHMFREFEATFAFEETPDQQRAIDEVLADM-ESERPMDRLVCGDVGYGKTEV 723
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
ALRA F V+ GKQA +LAPT VL +QH+ V ERF+ +P + VG LSRFQS+AE+ + +
Sbjct: 724 ALRACFKAVAGGKQAALLAPTTVLVEQHYATVCERFAGWP-VSVGRLSRFQSRAEQLDTI 782
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ G ++++VGTH +L V + +LGLLV+DEEQRFGV KE++ + +DVLTL+A
Sbjct: 783 KGLAAGTVDLVVGTHRVLSKDVRFKDLGLLVIDEEQRFGVTHKERLKRVRTQLDVLTLTA 842
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL+LA++G RD S+I+TPP +R ++T ++ + I+ EL RGGQVF+V
Sbjct: 843 TPIPRTLHLAMSGLRDLSIIATPPADRRAVRTFVAQVDDGVLREGIRRELGRGGQVFFVC 902
Query: 500 PRIKG-----------------------------LEEPMDFLQQAFPGVDIAIAHGQQYS 530
PRI L+E + L+ P +A+AHGQ +
Sbjct: 903 PRIGADPAPSKGKVKGKGKSQGETARRVRRGDISLDEWAEHLRALVPEARVAVAHGQMSA 962
Query: 531 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 590
LE+ M F G ++IL+ T IVESGLDI ANT+ V FGLAQLYQLRGR+GR+
Sbjct: 963 EALEKVMIDFVSGNLEILVSTTIVESGLDIARANTMFVDRADSFGLAQLYQLRGRIGRSK 1022
Query: 591 KEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 650
+ A YL P LS A RL L+ ELG GFQ+A D+ IRG G + G +Q+G +
Sbjct: 1023 QRAFCYLLVPPPEKLSSDARRRLETLQRFSELGAGFQIASHDLEIRGGGELLGAKQSGAI 1082
Query: 651 GNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEA 710
VG + + ML E+++++ V + ++++++ +P EYI +++
Sbjct: 1083 AAVGFEAYAAMLEEAVAELRSGDAGLVRPRDPELNVDVPGYIPDEYIPDTGQRLDLYKRL 1142
Query: 711 EKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYA 762
A ++D L E + +YG+ P +E+L AD+ + KI+A
Sbjct: 1143 SDAEDED--ELKILVEEITDRYGELPDEVELL----------ADLMVLKIHA 1182
>gi|421893877|ref|ZP_16324370.1| transcription-repair coupling factor [Pediococcus pentosaceus IE-3]
gi|385273362|emb|CCG89742.1| transcription-repair coupling factor [Pediococcus pentosaceus IE-3]
Length = 1165
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 241/609 (39%), Positives = 371/609 (60%), Gaps = 14/609 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGKF+G+ + V +Y+ I+Y G +PV Q + ++ +Y
Sbjct: 495 LKTGDYVVHVNHGIGKFMGMT--TMEVDGVHQDYMTIQYKGSGQLFIPVTQLN-LVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ E K P+ L+KL + W + K I+ + DL+ELY R +K + P +
Sbjct: 551 VAAEGKSPK-LNKLGGSD-WAKTKKNVASKIEDIADDLIELYAKREAEKGFAFKPDDSYQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F FPY TPDQ ++ ++++D+ ERE PMDRL+ GDVG+GKTEVALRA F V +G
Sbjct: 609 RQFDNDFPYTETPDQLRSIEEIKKDM-ERERPMDRLLVGDVGYGKTEVALRAAFKAVESG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT +LA+QHFD ++ERF YP I G+LSRFQ+ A+ +E L+ +K G +++IV
Sbjct: 668 KQVAILVPTTILAQQHFDTMNERFEGYP-IATGILSRFQTGAQVKETLEGLKDGSVDVIV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVEFKDLGLLVIDEEQRFGVKHKERIKELKSQVDVLTLTATPIPRTLNMSMI 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + I E+ R GQVFY+ R++ +E+ +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTYVMEENAGAIREGIMREMRRNGQVFYLHNRVQDIEKVVAE 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
++ P + HGQ +QLE+ + +F G +L+ T I+E+G+DI NANT+ V++
Sbjct: 847 IEALVPEARVGYIHGQMTEKQLEDILFEFIAGEYDVLVTTTIIETGIDIPNANTLFVENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+++ ELG GF++A +
Sbjct: 907 DHMGLSQLYQLRGRIGRSSRVAYAYFLYQKNRVLTELGEKRLEAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML +++ K +I + I
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDLYSQMLADAVKKK--QGKKVKRRSDSEISLGIEGF 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LPS YI + +E +A + +Q + + ++G P ++ LL+ ++ +
Sbjct: 1025 LPSSYIEDEQQKIEFYKRLRQANSHEEVVDIQ--DDMLDRFGDYPAEVDNLLQITDLKII 1082
Query: 752 AADIGITKI 760
A + + +I
Sbjct: 1083 ADQVQVERI 1091
>gi|430837160|ref|ZP_19455135.1| transcription-repair coupling factor [Enterococcus faecium E0680]
gi|430839946|ref|ZP_19457882.1| transcription-repair coupling factor [Enterococcus faecium E0688]
gi|430859208|ref|ZP_19476823.1| transcription-repair coupling factor [Enterococcus faecium E1552]
gi|430487590|gb|ELA64310.1| transcription-repair coupling factor [Enterococcus faecium E0680]
gi|430490186|gb|ELA66728.1| transcription-repair coupling factor [Enterococcus faecium E0688]
gi|430544050|gb|ELA84095.1| transcription-repair coupling factor [Enterococcus faecium E1552]
Length = 1173
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/555 (40%), Positives = 360/555 (64%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYINHLENPMEM 706
LP Y+ +E+
Sbjct: 1029 LPETYVADQRQKIEI 1043
>gi|189501723|ref|YP_001957440.1| hypothetical protein Aasi_0272 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497164|gb|ACE05711.1| hypothetical protein Aasi_0272 [Candidatus Amoebophilus asiaticus
5a2]
Length = 1123
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/634 (39%), Positives = 377/634 (59%), Gaps = 22/634 (3%)
Query: 139 YNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK 198
Y+ + F+ K + +L+ GDYVVH GI +F G+ D E + + Y D
Sbjct: 425 YSKSQAFTLK-ELNNLQPGDYVVHIDHGIARFSGLSRVSVNDKVQ--EVLRLVYKDNDVV 481
Query: 199 LPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRL 258
A + +Y E P T+SKL + AWE++K+K K +Q + +L++LY R
Sbjct: 482 YLSLHALHKISKYT-GKEGIVP-TMSKLG-SGAWEQKKSKVKHKVQVIAKELIQLYSKRK 538
Query: 259 KQKRPPYPKNPAI-AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKT 317
+ K+ + AE + F YE TPDQ A DV++D+ E PMDRL+CGDVGFGKT
Sbjct: 539 YAPGFAFSKDTFLQAEMESSFIYEDTPDQASATADVKKDM-EAPHPMDRLVCGDVGFGKT 597
Query: 318 EVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEE 377
EVA+RA F V KQ VL PT +LA QH++ R S +P + V ++RF+SK E +
Sbjct: 598 EVAIRAAFKAVYDRKQVAVLVPTTILALQHYESFKNRLSNFP-VDVKYVNRFKSKQEIKR 656
Query: 378 HLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTL 437
+ G ++I++GTH++LG + +LGLLVVDEEQ+FGVK K++I FK++VDVLTL
Sbjct: 657 IQEAAAQGKIDILIGTHTILGKAFEFKDLGLLVVDEEQKFGVKAKDRIKEFKVNVDVLTL 716
Query: 438 SATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFY 497
+ATPIPRTL+ +L G RD S+I+TPP R P++T + F K+ V AI YE+ RGGQVF+
Sbjct: 717 TATPIPRTLHFSLMGARDLSIIATPPSNRQPVQTSIHTFDKKIVQDAIHYEVQRGGQVFF 776
Query: 498 VLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 557
V RI ++E + L + P I IAHGQ QLE+ M F G IL+ TNI+ESG
Sbjct: 777 VHNRINNIQEVANMLYKLVPEYRIGIAHGQMDGDQLEKKMLTFIAGGYDILVSTNIIESG 836
Query: 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALE 617
LDI NANTII+ D FGL+ L+Q+RGRVGR++K+A YL P S L+++A +RL+ LE
Sbjct: 837 LDIPNANTIIINDSHMFGLSDLHQMRGRVGRSNKKAFCYLIAPPNSSLTEEARKRLSTLE 896
Query: 618 ECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV 677
E ELG GF++A +D+ IRG G + G +Q+G + +VG + + ++L E++ ++ E +
Sbjct: 897 EFTELGDGFKVAMRDLDIRGAGNLLGAEQSGFIADVGFEAYCKILDEAVQELKESEFKEL 956
Query: 678 PYKSV-------QIDININPRL----PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTE 726
+ + ID + L P+ Y+N+ + + + + + L F
Sbjct: 957 FAEELARKGQLSNIDCTLETDLELLIPTSYVNNDTERLRLYTKLDNIENEK--GLENFQV 1014
Query: 727 SLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 760
++ ++G P S++ L+K + +R +A + + KI
Sbjct: 1015 EIQDRFGALPTSVQELIKAVKLRWVAKKLCLQKI 1048
>gi|163815685|ref|ZP_02207057.1| hypothetical protein COPEUT_01865 [Coprococcus eutactus ATCC 27759]
gi|158448990|gb|EDP25985.1| transcription-repair coupling factor [Coprococcus eutactus ATCC
27759]
Length = 1186
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 240/606 (39%), Positives = 365/606 (60%), Gaps = 12/606 (1%)
Query: 157 GDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNE 216
GDYVVH+K GIG + GI+ ++ D + +Y+ IEYA+G + + + +Y ++
Sbjct: 510 GDYVVHEKYGIGVYKGIE-KIEVDGALK-DYLVIEYAEGGKLYVLASETDRIQKYR--SK 565
Query: 217 TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAIAEFA 275
RP +++L W++ + + K + ++ L++LY R ++ Y P + EF
Sbjct: 566 EGRPPKINRLG-GNEWQKVRNRVKGHVDEVAEHLVKLYAERQSKEGHAYSPDSEWQKEFE 624
Query: 276 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 335
FPY+ T DQ +A DV+ D+ E MDRL+CGDVGFGKTEVA+RA F V +Q
Sbjct: 625 ETFPYKETDDQLRAIADVKADM-ESSRIMDRLVCGDVGFGKTEVAIRAAFKAVGDSRQVA 683
Query: 336 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 395
L PT +LA+QH++ +ER YP + + LL RF ++ E + L +K G ++I++GTH
Sbjct: 684 YLVPTTILAEQHYETFTERMKDYP-VVIRLLCRFCTQKEIKNTLRELKEGKVDIVIGTHR 742
Query: 396 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD 455
LL V + NLGLL++DEEQRFGV KEKI K +VDVLTL+ATPIPRTL+++L G RD
Sbjct: 743 LLSKDVEFKNLGLLIIDEEQRFGVNHKEKIKEMKTNVDVLTLTATPIPRTLHMSLVGIRD 802
Query: 456 ASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 515
SL+ P +R PI+T++ + KE AI EL R GQV+YV R+ +E+ +Q+
Sbjct: 803 MSLLEEAPVDRRPIQTYVMEYDKELAREAIARELARQGQVYYVYNRVNDIEQFTAEVQKL 862
Query: 516 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 575
P ++ AHGQ R LE+ M +F + I +L+CT I+E+GLDI NANTII+ D FG
Sbjct: 863 VPNANVEFAHGQMDGRTLEDIMYRFNKKEIDVLVCTTIIETGLDIPNANTIIIHDANNFG 922
Query: 576 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGI 635
LAQLYQLRGRVGR+D+ A A++FY ++S+ A +RL A++E +LG G ++++ D+ I
Sbjct: 923 LAQLYQLRGRVGRSDRSAFAFMFYRRNKVISEVAEKRLRAIKEYTDLGSGVKISKADLNI 982
Query: 636 RGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSE 695
RG G++ GE Q+G+ VG DL+ +ML +++ + V Y++ +IDI I+ +P
Sbjct: 983 RGAGSVLGESQSGNYEVVGYDLYCKMLNDAVRERRGDTVFH-DYET-EIDIPIDSFIPET 1040
Query: 696 YINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADI 755
Y+ + +E+ +D + + L ++G P LL +R A
Sbjct: 1041 YVKNDFIKLELCKRISLIKNEDEYN--DIIDELIDRFGDIPDETMNLLDAALLRARAYVC 1098
Query: 756 GITKIY 761
IT+I+
Sbjct: 1099 YITRIW 1104
>gi|310829353|ref|YP_003961710.1| transcription-repair coupling factor [Eubacterium limosum KIST612]
gi|308741087|gb|ADO38747.1| transcription-repair coupling factor [Eubacterium limosum KIST612]
Length = 1140
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/638 (39%), Positives = 387/638 (60%), Gaps = 22/638 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIK----FDVQKDSTVPIEYVFIEYA-DGMAKLPV 201
K+D ++ L GDYVVH GIG ++GI+ +V KD V IEYA D +PV
Sbjct: 466 KIDSFAELHVGDYVVHDVHGIGIYLGIEQLTIDNVTKDLMV------IEYAGDARLYIPV 519
Query: 202 KQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQK 261
+Q + Y K+P+ ++++ + W++ K K + A++ M +L+ LY R K
Sbjct: 520 EQMDSVQV-YIGTGGDKKPK-VNQMGNPD-WQKAKNKAQKAVEDMADELIALYAKRRSMK 576
Query: 262 RPPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320
+ P EF FPY T DQ + +++ D+ E E PMDRL+CGDVG+GKTEVA
Sbjct: 577 GYAFSPDTSWQKEFEDDFPYIETEDQLRCVEEIKADM-ESEIPMDRLLCGDVGYGKTEVA 635
Query: 321 LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380
LRA F V GKQ +L PT +LA+QH++ V ERF KYP I V ++SRF++ ++++ L
Sbjct: 636 LRAAFKAVMEGKQVAMLVPTTILAQQHYNTVLERFRKYP-ISVEVISRFRTSGQQKKILG 694
Query: 381 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSAT 440
+ G L++I+GTH LL V + +LGLL++DEEQRFGV+ KEKI K +VDVLTLSAT
Sbjct: 695 DLALGKLDMIIGTHRLLSQDVQFKDLGLLIIDEEQRFGVRSKEKIKQLKQNVDVLTLSAT 754
Query: 441 PIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLP 500
PIPRTL++++TG RD S+I PP R P++T++ A++ + AI EL RGGQV+YV
Sbjct: 755 PIPRTLHMSMTGVRDMSVIEEPPEGRRPVQTYVMAYNPLIIQDAINRELGRGGQVYYVHN 814
Query: 501 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
R+ + E +Q P I +AHG+ +LE+ M F IL+ T IVESGLD+
Sbjct: 815 RVHDIHEVAIDVQSLVPDARIVVAHGRMSGSELEDIMVDFLNHDFDILVTTTIVESGLDV 874
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
+NANT+I+ + FGL+QLYQLRGRVGR+D +A+AY+ + K +L++ A +RL A+++
Sbjct: 875 KNANTMIIDEGDHFGLSQLYQLRGRVGRSDAQAYAYVTHK-KEILTEVAQKRLKAIKDFT 933
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYK 680
G GF++A +D+ IRG G I G +Q+G + +G +L+ +L E++SK + + +
Sbjct: 934 AFGSGFKVAMRDLEIRGAGNILGAEQSGHLFKIGYELYCRILEEAISKRMDGVEVETE-E 992
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
++I+++I+ +P YI+ E ++ + + I F E L ++G P +
Sbjct: 993 PIRINLDIDGYIPERYISSEELKYDIYKKL--TFIKTIEDYDDFEEELLDRFGDIPNGVY 1050
Query: 741 ILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVF 778
L+ ++ MA+ IGI +I G+ + + + K+VF
Sbjct: 1051 NLMSIAMIKNMASSIGIKEIKQKGQFIYLTFSEKKEVF 1088
>gi|303232983|ref|ZP_07319663.1| transcription-repair coupling factor [Atopobium vaginae PB189-T1-4]
gi|302480910|gb|EFL43990.1| transcription-repair coupling factor [Atopobium vaginae PB189-T1-4]
Length = 1138
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 248/625 (39%), Positives = 376/625 (60%), Gaps = 29/625 (4%)
Query: 148 KVDPYSL----RSGDYVVHKKVGIGKFVGIKFDVQKD-STVPIEYVFIEYA-DGMAKLPV 201
++DP L + GDYVVH GI F I V++D P +Y + YA D +P
Sbjct: 470 RIDPVQLTFPFKPGDYVVHATHGIALFKQI---VRQDVGGKPRDYFLLIYANDDKLYVPF 526
Query: 202 KQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQK 261
+Q R L RY P+ + PR L++L + W R ++ + + +K+ DL++LY R
Sbjct: 527 EQVDR-LTRYIGPDASH-PR-LTRL-NCADWSRACSRARASAKKLAFDLVDLYTRRQTVH 582
Query: 262 RPPYP-KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320
+ N A + A FPY T DQ++A D++ D+ E+ PMDRL+CGDVGFGKTEVA
Sbjct: 583 GYGFSYDNQAQRDMEASFPYTLTSDQERALADIKADM-EQAKPMDRLLCGDVGFGKTEVA 641
Query: 321 LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380
LRA F GKQ MVL PT +LA+QHF+ ERF+ + D+ V +LSRF S AE+ L+
Sbjct: 642 LRAAFKCCQDGKQVMVLCPTTILAQQHFETFFERFTPF-DLCVRVLSRFISPAEQRRALE 700
Query: 381 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSAT 440
G +++++GTH LL S V NLGL+++DEEQRFGV+ KE++ + + VDVLTLSAT
Sbjct: 701 GFSAGDVDVLIGTHRLLSSDVNPANLGLVIIDEEQRFGVQHKEQLKTIREQVDVLTLSAT 760
Query: 441 PIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLP 500
PIPRT+ +A++G RD SLI TPPP R + H+ + + + AI++EL R GQV+YV
Sbjct: 761 PIPRTMQMAMSGVRDMSLILTPPPGRKSVIVHVGEWDADVISDAIRFELARSGQVYYVSN 820
Query: 501 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
R+ +++ ++ ++ A P + +AHGQ + Q+E+ M FA+ I +L+ T I+ESG+D
Sbjct: 821 RVATIDQAIERVRSAAPEARVGVAHGQMSAAQIEDVMLSFAEREIDVLVATTIIESGIDN 880
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
+ NT+I++D Q+ GLAQLYQL+GRVGR +A+AY+ +P+ L+D+A RL A+ E +
Sbjct: 881 PHTNTLIIEDAQRLGLAQLYQLKGRVGRGRLQAYAYIMFPETQPLTDEARRRLEAIYEHQ 940
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV-DEHCVISVPY 679
ELG G ++A KD+ IRG G++ G +Q G++ +VG DLF ML E++ + +H
Sbjct: 941 ELGSGMRIAMKDLEIRGAGSLVGAEQHGNLSSVGFDLFTHMLSEAVRDIRGQH------Q 994
Query: 680 KSVQIDININPRLP----SEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKE 735
V D+ IN P YI ++ + +V A DI + + +++ ++ G
Sbjct: 995 DDVASDVVINISAPFYFDEAYIPEVD--VRVVWYRRLAYASDIETIDELEKTITKECGDM 1052
Query: 736 PYSMEILLKKLYVRRMAADIGITKI 760
+ L + +R A +GIT +
Sbjct: 1053 EEPAQNLFDRARIRVYATQLGITTV 1077
>gi|227894501|ref|ZP_04012306.1| transcriptional repair coupling factor [Lactobacillus ultunensis DSM
16047]
gi|227863660|gb|EEJ71081.1| transcriptional repair coupling factor [Lactobacillus ultunensis DSM
16047]
Length = 1164
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 234/592 (39%), Positives = 364/592 (61%), Gaps = 14/592 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG+F GIK +++ V +Y+ I Y G +P Q S ++ +Y
Sbjct: 491 LKPGDYVVHVNHGIGRFEGIK--TLENNGVKRDYITITYQHGDQLFVPADQLS-LVQKY- 546
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K P ++KL + W + K K + ++ + DL+ELY R +K + P +
Sbjct: 547 VASEGKTPH-INKLG-GSEWAKTKRKVQSKVEDIADDLIELYAKRESEKGFAFSPDDDLQ 604
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F FPY TPDQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F +
Sbjct: 605 KQFDDAFPYPETPDQLRSIKEIKEDM-EKPKPMDRLLVGDVGFGKTEVALRAAFKAIQDN 663
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + +RF +P + +LSRFQ+ AE +E ++ ++ G ++++V
Sbjct: 664 KQVAFLVPTTILAQQHYETIQDRFKDFP-VNTAMLSRFQTPAESKEIIEGLEDGKIDLVV 722
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLL+VDEEQRFGVK KEK+ K ++DVLTL+ATPIPRTL++++
Sbjct: 723 GTHRLLSKDVHFKDLGLLIVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMSMV 782
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ TPP R PI+T++ V A E+ RGGQVFY+ RI ++E ++
Sbjct: 783 GVRDLSVMETPPQNRYPIQTYVMEQIPSVVKDACLREMQRGGQVFYLYNRISDIDETVEK 842
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQQ P IA AHG+ QLE+ + +F IL+ T I+E+G+D+ N NT+I++D
Sbjct: 843 LQQLIPNARIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDMPNVNTMIIEDA 902
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+ + ELG GF++A +
Sbjct: 903 DHYGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMR 962
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + +VG DL+ +ML +++ + ++ + +ID+ +
Sbjct: 963 DLSIRGAGNMLGAQQHGFIDSVGYDLYSQMLSDAIK--ERKGKKTIKKSNAEIDLKLEAY 1020
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+P YI E +E + + +QD L + + L ++G P ++E LL
Sbjct: 1021 IPDTYIADQEEKIEFYKKIKAVTDQD--ELDKIEDELIDRFGDYPAAVENLL 1070
>gi|374315052|ref|YP_005061480.1| transcription-repair coupling factor Mfd [Sphaerochaeta pleomorpha
str. Grapes]
gi|359350696|gb|AEV28470.1| transcription-repair coupling factor Mfd [Sphaerochaeta pleomorpha
str. Grapes]
Length = 1096
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 235/551 (42%), Positives = 347/551 (62%), Gaps = 19/551 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI----KFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRML 208
L GDYVVH G+G+FV I FD ++D ++ I YADG M +P++QA+ ++
Sbjct: 432 LNEGDYVVHVNYGVGQFVKIDRVKSFDRERD------FIKIAYADGEMLYVPIEQAN-LV 484
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
RY + +E PR KL WE +K K + + + L+ LY R +PK+
Sbjct: 485 QRY-IGSEQGTPRK-DKLGGQ-GWENKKAKARKNAEDLAKHLIALYAKRQNSIGFAFPKD 541
Query: 269 PAIA-EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
+F A FP++ T DQ D++ D+ E+ MDRL+CGDVG+GKTE+A RA F
Sbjct: 542 TDWQLQFEAAFPFDETVDQLTCIEDIKEDM-EKPIVMDRLVCGDVGYGKTEIAFRAAFKA 600
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V GKQ LAPT +LA+QH++ +R + +P ++ LSR K E+++ L + G +
Sbjct: 601 VMGGKQVAFLAPTTILAEQHYENFIKRVADFP-VRCAQLSRVVPKKEQKQILLSLAEGKI 659
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I+ GTH +L ++Y +LGLLVVDEEQRFGVK KEKI + + S+D L+LSATPIPRTLY
Sbjct: 660 DIVFGTHRILQKDLLYRDLGLLVVDEEQRFGVKDKEKIKTMRTSIDSLSLSATPIPRTLY 719
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
++L RD SL+ TPP R PI+T++ + + ++ AI+ E+DRGGQVF++ RI+ L+E
Sbjct: 720 MSLLKIRDMSLLKTPPIARRPIETNIGEYDENLIVRAIRAEVDRGGQVFFLHNRIESLDE 779
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ L P + I AHGQ S LE+TM +F I++L+ T I+E+G+DI N NTII
Sbjct: 780 VVMQLSNRLPDLIIESAHGQMDSSALEDTMRRFVHEGIQVLVSTTIIENGIDIPNVNTII 839
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ ++GL+QLYQLRGRVGR D++A+AYLFYP S LS+ A++RL + E ELG GF+
Sbjct: 840 IDRADRYGLSQLYQLRGRVGRNDRQAYAYLFYPQGSALSEIAVKRLKIISEHTELGSGFK 899
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDIN 687
+A KDM IRG G + G +Q+G + +VG+D++ +L E++S + + K V ++++
Sbjct: 900 VAMKDMEIRGTGNLLGREQSGQLSSVGLDMYIRILDEAISDLQQTGEADRE-KEVFLELD 958
Query: 688 INPRLPSEYIN 698
+P YI
Sbjct: 959 YTGFIPDNYIT 969
>gi|298373454|ref|ZP_06983443.1| transcription-repair coupling factor [Bacteroidetes oral taxon 274
str. F0058]
gi|298274506|gb|EFI16058.1| transcription-repair coupling factor [Bacteroidetes oral taxon 274
str. F0058]
Length = 1109
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 247/628 (39%), Positives = 372/628 (59%), Gaps = 24/628 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG+F G+ + D+ P E + + Y G + + +Y+
Sbjct: 426 LKPGDYVVHHDHGIGQFAGLLRADINGK---PQEVIKLVYKGGDIIFVNISSLHKIAKYH 482
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
++T+ TLSKL T AWER K + K ++ + DL++LY RL+QK Y P +
Sbjct: 483 GKDDTQP--TLSKLG-TGAWERLKERTKTKVKDIARDLIKLYALRLEQKGFEYSPDSYLQ 539
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
AE A F YE TPDQ KA DV+ D+ + PMDRL+CGDVGFGKTEVA+RA F + G
Sbjct: 540 AELEASFVYEDTPDQSKATADVKTDM-QSPKPMDRLVCGDVGFGKTEVAIRAAFKAATDG 598
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT +LA QH+ +ER YP + V LSR +S + +E + ++ G ++I++
Sbjct: 599 KQVAVLVPTTILAFQHYKTFAERLKNYP-VTVEYLSRAKSPKQTKEIISRLREGKIDILI 657
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH + VV+ +LGLLV+DEEQ+FGV KEK+ K +VD LTL+ATPIPRTL +L
Sbjct: 658 GTHKIANKDVVFKDLGLLVIDEEQKFGVSVKEKLKELKANVDTLTLTATPIPRTLQFSLM 717
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I+TPPP R P+ T L F +E + AI++E++R GQ+F+V +I+ L
Sbjct: 718 GARDLSIINTPPPNRYPVVTELIRFDEETIREAIEFEMNRNGQIFFVNNKIQNLYLLQTK 777
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+++ P IA+AHGQ + QLE+T+ F IL+ T ++ESG+D+ N NTI V +
Sbjct: 778 IKKIVPEARIAVAHGQMPTTQLEDTIIDFINYDYDILLATTVIESGIDMPNVNTIFVNNA 837
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+ L+QLRGRVGR++++A+ YL D +SD A RL A+ +LG GF +A +
Sbjct: 838 NHFGLSDLHQLRGRVGRSNRKAYCYLITSDMKDVSDDARRRLQAISTFSDLGSGFNIAMQ 897
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV--DEHCVI---------SVPYK 680
D+ IRG G + G +Q+G + +G + + ++L E++ ++ DE I +V
Sbjct: 898 DLDIRGAGNMLGAEQSGFIAELGYETYQKILGEAVQELHRDEFADIIAETQQRQPTVFVD 957
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
+ +++ PS+YI+ M + E + A+ + L +F LR ++G P +
Sbjct: 958 DCTFESDLDLMFPSDYISSTSERMALYGELDAIADDE--KLDEFKSRLRDRFGAIPTEAD 1015
Query: 741 ILLKKLYVRRMAADIGITKIYA-SGKMV 767
L+K + +RR A G+ +I +G+M
Sbjct: 1016 DLMKVIPLRRRAIAFGVERILLRNGRMT 1043
>gi|421130764|ref|ZP_15590956.1| transcription-repair coupling factor [Leptospira kirschneri str.
2008720114]
gi|410357867|gb|EKP05072.1| transcription-repair coupling factor [Leptospira kirschneri str.
2008720114]
Length = 1181
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 248/623 (39%), Positives = 388/623 (62%), Gaps = 21/623 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRMLYRYN 212
L+ GDYVVH G+GKFV K + +++ +EY+ G + +P+ Q S ++ RY
Sbjct: 515 LKEGDYVVHIHHGVGKFV--KIERTSAGGKERDFLKLEYSGGDSLFVPLDQIS-LVQRYI 571
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E+ R +L K + W++ K + + A++ + DL+++Y +RLK + +P +
Sbjct: 572 GGTESPRLDSLGK----STWKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQ 627
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG
Sbjct: 628 EEFEAEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAG 686
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
+Q M+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++V
Sbjct: 687 RQIMMLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVV 745
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH++L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALT
Sbjct: 746 GTHAILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALT 805
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G R+ S+I+TPP R ++T++ + + AI+ E+ R GQVFY+ R++ +EE +
Sbjct: 806 GIRELSIIATPPKNRQSVETYVLEEEDDLIADAIRNEIQRDGQVFYLYNRVETIEEETSY 865
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L + P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+
Sbjct: 866 LNKLVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRA 925
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +
Sbjct: 926 DLFGLSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMR 985
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININP 690
D+ IRG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N
Sbjct: 986 DLEIRGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNF 1042
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYV 748
+P YI+ +E + E A +D+ + + + ++G+ P + ILL+K +
Sbjct: 1043 FIPETYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--I 1098
Query: 749 RRMAADIGITKIYASGKMVGMKT 771
R +A+ +G + + MK+
Sbjct: 1099 RTLASSLGFESVTEMKDEIKMKS 1121
>gi|116493280|ref|YP_805015.1| transcription-repair coupling factor [Pediococcus pentosaceus ATCC
25745]
gi|116103430|gb|ABJ68573.1| transcription-repair coupling factor [Pediococcus pentosaceus ATCC
25745]
Length = 1165
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 241/609 (39%), Positives = 371/609 (60%), Gaps = 14/609 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEY-ADGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGKF+G+ + V +Y+ I+Y G +PV Q + ++ +Y
Sbjct: 495 LKTGDYVVHVNHGIGKFMGMT--TMEVDGVHQDYMTIQYKGSGQLFIPVTQLN-LVQKY- 550
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ E K P+ L+KL + W + K I+ + DL+ELY R +K + P +
Sbjct: 551 VAAEGKSPK-LNKLGGSD-WAKTKKNVASKIEDIADDLIELYAKREAEKGFAFKPDDSYQ 608
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F FPY TPDQ ++ ++++D+ ERE PMDRL+ GDVG+GKTEVALRA F V +G
Sbjct: 609 RQFDNDFPYTETPDQLRSIEEIKKDM-ERERPMDRLLVGDVGYGKTEVALRAAFKAVESG 667
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ +L PT +LA+QHFD ++ERF YP I G+LSRFQ+ A+ +E L+ +K G +++IV
Sbjct: 668 KQVAILVPTTILAQQHFDTMNERFEGYP-IATGILSRFQTGAQVKETLEGLKDGSVDVIV 726
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLLV+DEEQRFGVK KE+I K VDVLTL+ATPIPRTL +++
Sbjct: 727 GTHRLLSKDVEFKDLGLLVIDEEQRFGVKHKERIKELKSQVDVLTLTATPIPRTLNMSMI 786
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + I E+ R GQVFY+ R++ +E+ +
Sbjct: 787 GVRDLSVIETPPTNRYPIQTYVMEENAGAIREGIMREMRRNGQVFYLHNRVQDIEKVVAE 846
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
++ P + HGQ +QLE+ + +F G +L+ T I+E+G+DI NANT+ V++
Sbjct: 847 IEALVPEARVGYIHGQMTEKQLEDILFEFIAGEYDVLVTTTIIETGIDIPNANTLFVENA 906
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+++ ELG GF++A +
Sbjct: 907 DHMGLSQLYQLRGRIGRSSRVAYAYFLYQKNRVLTELGEKRLEAIKDFTELGSGFKIAMR 966
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G+QQ G + +VG DL+ +ML +++ K +I + I
Sbjct: 967 DLSIRGAGNLLGKQQHGFIDSVGYDLYSQMLADAVKKK--QGKKVKRRSDSEISLGIEGF 1024
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
LPS YI + +E +A + +Q + + ++G P ++ LL+ ++ +
Sbjct: 1025 LPSSYIEDEQQKIEFYKRLRQANSHEEVVDIQ--DDMLDRFGDYPAEVDNLLQITDLKII 1082
Query: 752 AADIGITKI 760
A + + +I
Sbjct: 1083 ADQVQVERI 1091
>gi|431753373|ref|ZP_19542047.1| transcription-repair coupling factor [Enterococcus faecium E2620]
gi|430612280|gb|ELB49331.1| transcription-repair coupling factor [Enterococcus faecium E2620]
Length = 1173
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/555 (40%), Positives = 360/555 (64%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYINHLENPMEM 706
LP Y+ +E+
Sbjct: 1029 LPETYVADQRQKIEI 1043
>gi|312898732|ref|ZP_07758121.1| transcription-repair coupling factor [Megasphaera micronuciformis
F0359]
gi|310620163|gb|EFQ03734.1| transcription-repair coupling factor [Megasphaera micronuciformis
F0359]
Length = 1092
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 246/626 (39%), Positives = 370/626 (59%), Gaps = 14/626 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L +GDYVVH GIGK+VGIK ++ D V +Y+ I Y+ + +P Q + L RY
Sbjct: 424 LHAGDYVVHDTHGIGKYVGIK-TIETDG-VHKDYLEIHYSGHDVLYVPTDQI-QFLQRY- 479
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAI 271
+ NE + PR LS++ W++ + K + +I + L+ LY R +P + P
Sbjct: 480 IGNEGEAPR-LSRMGGAD-WKKARAKAQKSIDNLAEKLVALYAKREITDGYAFPPDTPFQ 537
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPYE T DQ KA ++ + E+ PMD L+CGDVGFGKTEVA+RA F V G
Sbjct: 538 QEFEEAFPYEETQDQLKAVAAIKESM-EKPVPMDCLVCGDVGFGKTEVAVRAAFKAVMGG 596
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT VLA+QH+ SERF + + +L+RF+S E++E L ++ G +++++
Sbjct: 597 KQVAVLVPTTVLAQQHYQTFSERFRSFG-VVCDVLNRFRSIKERKEILQKVEAGQIDVLI 655
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTHS+L V + + GLL+VDEEQRFGV QKEK ++ +DVLTLSATPIPRTL+++L
Sbjct: 656 GTHSILNKNVKFKDAGLLIVDEEQRFGVAQKEKWKTWATGIDVLTLSATPIPRTLHMSLV 715
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
R LI TPP ERLP++T+++ + V AI E RGGQVF+V R+ +E
Sbjct: 716 HLRQMCLIETPPTERLPVQTYVTEYDGAIVRDAIMREKRRGGQVFFVYNRVATMERMKVE 775
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L+ P V I +AHGQ LE M F +G +L+C+++VE+GLDI NANTIIV D
Sbjct: 776 LEALVPEVTIGMAHGQMTGSVLEANMFDFYEGEYDVLLCSSLVENGLDIANANTIIVYDA 835
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+FGL+QLYQ+RGRVGR+ + A+AY Y +L++ A +RL A++E ELG GF++A +
Sbjct: 836 DRFGLSQLYQMRGRVGRSHRTAYAYFLYRRNKILNEVAEKRLQAVKEFTELGSGFKIAMR 895
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G +Q G++ VG ++ +ML E+++++ +++ ++
Sbjct: 896 DLEIRGAGNLLGREQHGNIAGVGFVMYVQMLEEAVNRLRNEGYTKTVDVRTTLEVRVDAF 955
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRM 751
+ YI H +EM ++ L + L ++GK +++ LLK ++R
Sbjct: 956 IDDTYIEHGGQKIEMYQRLALVRTEE--ALEELKNELTDRFGKPTRAVQNLLKATHLRIR 1013
Query: 752 AADIGITKIYASGKMVGMKTNMNKKV 777
A + + S K +G++ +V
Sbjct: 1014 AQKDSVLSV--SQKGIGLEFRWKDEV 1037
>gi|54293927|ref|YP_126342.1| transcription-repair coupling factor [Legionella pneumophila str.
Lens]
gi|53753759|emb|CAH15217.1| Transcription-repair coupling factor [Legionella pneumophila str.
Lens]
Length = 1153
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 255/656 (38%), Positives = 383/656 (58%), Gaps = 16/656 (2%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRML 208
D LR G VVH + G+G++ G+++ + + T P E++ + YA D +PV + M+
Sbjct: 476 DMAELRLGAPVVHLQFGVGRYQGLQY-IDSNGT-PSEFLVLAYAGDDKIYVPVT-SLHMI 532
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
RY + P L KL + W++ K K I + ++L++LY R Q Y N
Sbjct: 533 SRYTGVDSEHAP--LHKLG-SDQWQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFN 589
Query: 269 PA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
+ +FA+ FP+ TPDQ +A + +D+ + PMDRLICGDVGFGKTEVA+RA F
Sbjct: 590 QSEYIKFASGFPFTETPDQLQAIEQIIKDM-QSPRPMDRLICGDVGFGKTEVAMRAAFVA 648
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V GKQ +LAPT +LA QHF+ +RF+++P + + LLSRF+S E E L ++ G +
Sbjct: 649 VQNGKQVCILAPTTLLAGQHFESFRDRFAEFP-VNIELLSRFRSNKESEAVLAALQSGKV 707
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH L + + + NLGLL++DEE RFGVKQKE I S + VD+L+++ATPIPRTL
Sbjct: 708 DIVIGTHKLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLN 767
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+A+ G RD SLI+TPP +RL IKT + + AI E+ RGGQVFY+ ++ +E
Sbjct: 768 MAMAGIRDISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYLHNNVQTIER 827
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
L+ P I AHGQ RQLE M F +L+CT I+E+G+DI ANTII
Sbjct: 828 VCQDLEALVPEAKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTANTII 887
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ +FGLAQL+QLRGRVGR+ +A+AYL P++ LL+ A++RL A+ +LG GF
Sbjct: 888 IDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFT 947
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVP-YKSVQI 684
LA D+ IRG G + GE+Q+G++ +G +LF EML +++ K + +S P ++ +I
Sbjct: 948 LATHDLEIRGAGELLGEEQSGNMHAIGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEI 1007
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+ I+ +P +YI + N + M A + L + L ++G P ++ L
Sbjct: 1008 DLRISAIIPEDYIGDIHNRLIMYKRIANA--KTTQQLRELQIELIDRFGLLPQPVKHLFL 1065
Query: 745 KLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 800
++ A +GI KI AS + + + + + S+ +VH EG Q
Sbjct: 1066 ITELKLKAEQLGIQKISASAQQGKLDFSEKPSIDPGTLISLI-QVHAKRYQMEGPQ 1120
>gi|328956571|ref|YP_004373957.1| transcription-repair coupling factor [Carnobacterium sp. 17-4]
gi|328672895|gb|AEB28941.1| transcription-repair coupling factor [Carnobacterium sp. 17-4]
Length = 1173
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 261/690 (37%), Positives = 420/690 (60%), Gaps = 45/690 (6%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L GDYVVH GIGK+ G++ ++ D + +Y+ I Y D AKL PV Q
Sbjct: 491 RLKSYSELNPGDYVVHVNHGIGKYTGME-TLEIDG-IHQDYMSIIYKDD-AKLFIPVTQL 547
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ +L +Y + +E K PR ++KL T W + K K I+ + +L+ELY R ++
Sbjct: 548 N-LLQKY-VSSEAKTPR-VNKLGGT-EWAKTKKKVATKIEDIADELIELYAAREQEVGYA 603
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + EF FPY T DQ + +++ D+ E++ PMDRL+ GDVG+GKTEVA+RA
Sbjct: 604 FSPDDAYQEEFENAFPYTETEDQLSSTAEIKHDM-EQKKPMDRLLVGDVGYGKTEVAMRA 662
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
IF V GKQA L PT +LA+QH++ + +RF+ +P I++GLLSRF++K ++ E + +K
Sbjct: 663 IFKAVQEGKQAAFLVPTTILAQQHYETMLQRFADFP-IEIGLLSRFRTKKQQNETIAGLK 721
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH +L + + ++GLL+VDEEQRFGVK KEK+ K VDVLTL+ATPIP
Sbjct: 722 KGQVDIVVGTHRILSKDIEFQDIGLLIVDEEQRFGVKHKEKLKQLKAQVDVLTLTATPIP 781
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ E+ RGGQVFY+ R+
Sbjct: 782 RTLHMSMLGVRDLSVIETPPANRYPVQTYVMEQNLGAIREAVEREMARGGQVFYLYNRVA 841
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E+ +D LQQ P I AHGQ QLE T+ +F +G +L+ T I+E+G+D+ N
Sbjct: 842 TIEKKVDELQQLIPDARIGYAHGQMTEGQLENTLLQFIEGEYDMLVTTTIIETGVDMPNV 901
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+ V++ GL+QLYQLRGRVGR+++ A+AY Y +L++ + +RL A+++ ELG
Sbjct: 902 NTLFVENADHMGLSQLYQLRGRVGRSNRVAYAYFLYQPNKVLNEVSEKRLQAIKDFTELG 961
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS-V 682
GF++A +D+ IRG G + G QQ G + +VG DL+ EML E++++ + + + K+ V
Sbjct: 962 SGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSEMLSEAVAR--KRGIDAKEEKTQV 1019
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
+ID+ IN LP YI +E+ + + + +Q + L ++G+ Y+ E+
Sbjct: 1020 EIDLGINAYLPGTYIEDERQKIEIYKRIRELRSHEQYVELQ--DDLIDRFGE--YADEVA 1075
Query: 743 ------LKKLY--------VRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSE 788
L K+Y ++R ++ +T +VG +T ++VF+ S++
Sbjct: 1076 DLLTIGLIKMYGERALIETIKRTGDEVALT-----FSVVGTQTLPAEEVFR----SLSEV 1126
Query: 789 VHRNSLTFEGDQIKAELLLELPREQLLNWI 818
R ++ + D++ + L+L +E W+
Sbjct: 1127 PLRANVAVKKDRLM--VTLQLKKEPTYQWL 1154
>gi|282850657|ref|ZP_06260036.1| transcription-repair coupling factor [Veillonella parvula ATCC
17745]
gi|282580150|gb|EFB85554.1| transcription-repair coupling factor [Veillonella parvula ATCC
17745]
Length = 1098
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 245/546 (44%), Positives = 354/546 (64%), Gaps = 22/546 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYRY 211
L GDYVVH GIGK++G+K + + +Y+ I YA G KL P + L +Y
Sbjct: 425 LTPGDYVVHNMHGIGKYIGLK--TIETEGIHRDYIEIAYA-GTDKLFLPANNLDQ-LQKY 480
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPA 270
+ NE PR ++K+ W + +K K +I + L+E+Y R + + P P
Sbjct: 481 -IGNEGDVPR-INKMGGRD-WSKVVSKAKKSIDDLADKLVEIYAQREITEGFAFLPDQPW 537
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF FPYE T DQ +A +++ + ER PMDRL+ GDVGFGKTEVA+RAIF V +
Sbjct: 538 QQEFEDAFPYEETEDQLQATAEIKESM-ERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMS 596
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ VL PT VLA+QHF RF+ + +KV +L+RF++ +EK++ L ++ G ++++
Sbjct: 597 GKQVAVLVPTTVLAQQHFQTFLNRFAPF-GVKVDVLNRFRTTSEKKQILKGVEDGSIDVL 655
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTHSLL +VV+ +LG+LVVDEEQRFGV QKEK + ++DVLTLSATPIPRTL+++L
Sbjct: 656 IGTHSLLNKKVVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSL 715
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G R+ S+I+TPP ERLP++T++ + + AIK EL RGGQV++V R+ + +
Sbjct: 716 VGVREMSVINTPPEERLPVQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGE 775
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L+ A PG+ A+AHGQ RQ+EE M F +G +L+ T+I+E+GLDI NANTII+ D
Sbjct: 776 LLESALPGLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYD 835
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQALERLAALEECRELGQGFQLA 629
+ GL+QLYQ+RGRVGR+ + A+AY Y PDK +LS+ A +RL A+EE ELG GF+LA
Sbjct: 836 ADRLGLSQLYQMRGRVGRSRRRAYAYFMYRPDK-ILSEAAEKRLKAIEEFTELGAGFKLA 894
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G + G QQ G++ +VG ++ ML E+++K K V+ D++I+
Sbjct: 895 MRDLEIRGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQN--------KEVERDVSID 946
Query: 690 PRLPSE 695
P + E
Sbjct: 947 PAIDLE 952
>gi|196250768|ref|ZP_03149455.1| transcription-repair coupling factor [Geobacillus sp. G11MC16]
gi|196209718|gb|EDY04490.1| transcription-repair coupling factor [Geobacillus sp. G11MC16]
Length = 1177
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/611 (39%), Positives = 378/611 (61%), Gaps = 17/611 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIGK++GI + + + V +Y+ I+Y G +PV Q ++ +
Sbjct: 500 LQVGDYVVHVNHGIGKYLGI--ETLEINGVHKDYIHIQYQGGDTLYVPVDQMDQV--QKY 555
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ +E K P+ + KL T W++ K K + ++Q + DL++LY R K + ++ +
Sbjct: 556 VGSEGKEPK-IYKLGGTE-WKKVKKKVESSVQDIAEDLIKLYAEREASKGYAFSQDTEMQ 613
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A FPY+ T DQ ++ +++RD+ E E PMDRL+CGDVG+GKTEVALRA F + G
Sbjct: 614 REFEAAFPYQETEDQLRSIEEIKRDM-ESEKPMDRLLCGDVGYGKTEVALRAAFKAIMDG 672
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ V ERF +P I VGLL+RF+++ ++ E + +K G +++++
Sbjct: 673 KQVAFLVPTTILAQQHYETVRERFQGFP-INVGLLNRFRTRKQQAETIKGLKDGTIDMVI 731
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIPRTL++++
Sbjct: 732 GTHRLLSKDVKFKDLGLLIIDEEQRFGVAHKEKIKQLKANIDVLTLTATPIPRTLHMSMI 791
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T++ ++ E V AI+ EL R GQVF++ I+ ++ +
Sbjct: 792 GVRDLSIIETPPENRFPVQTYVMEYTPELVKEAIERELARDGQVFFLYNHIEDIDLRAEE 851
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+ Q P + AHG+ +LE T+ F +G +L+ T I+E+G+DI N NT+IV D
Sbjct: 852 IAQLVPEARVTFAHGRMSEAELESTILAFLEGQYDVLVTTTIIETGVDIPNVNTLIVYDA 911
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +
Sbjct: 912 DRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNETAEKRLQAIKEFTELGSGFKIAMR 971
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G I G +Q G + +VG DL+ +ML E++ K V ID+ ++
Sbjct: 972 DLSIRGAGNILGAEQHGFIDSVGFDLYSQMLKEAIEK-RRGLKQEEERPDVVIDVEVDAY 1030
Query: 692 LPSEYINHLENPMEMVNEAEKAAE--QDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+P YI+ +EM KA E +D+ L E + ++G P + L + ++
Sbjct: 1031 IPDTYISDGLQKIEMYKRF-KAVETLEDVEML---REEMADRFGDYPDEVAYLFQIAEIK 1086
Query: 750 RMAADIGITKI 760
+A +G+ I
Sbjct: 1087 ALAKQLGVESI 1097
>gi|425055288|ref|ZP_18458769.1| transcription-repair coupling factor [Enterococcus faecium 505]
gi|403034230|gb|EJY45694.1| transcription-repair coupling factor [Enterococcus faecium 505]
Length = 1173
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 224/546 (41%), Positives = 357/546 (65%), Gaps = 11/546 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYI 697
LP Y+
Sbjct: 1029 LPETYV 1034
>gi|431739281|ref|ZP_19528218.1| transcription-repair coupling factor [Enterococcus faecium E1972]
gi|430596111|gb|ELB33962.1| transcription-repair coupling factor [Enterococcus faecium E1972]
Length = 1173
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/555 (40%), Positives = 360/555 (64%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYINHLENPMEM 706
LP Y+ +E+
Sbjct: 1029 LPETYVADQRQKIEI 1043
>gi|332798184|ref|YP_004459683.1| transcription-repair coupling factor [Tepidanaerobacter acetatoxydans
Re1]
gi|332695919|gb|AEE90376.1| transcription-repair coupling factor [Tepidanaerobacter acetatoxydans
Re1]
Length = 1178
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/635 (40%), Positives = 377/635 (59%), Gaps = 14/635 (2%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRML 208
D L GDYVVH GIGK++GI+ ++ + +Y + YA G +P Q ++
Sbjct: 502 DFNELDVGDYVVHITHGIGKYLGIE-SLEVGGHIK-DYFTLMYAGGDKLYVPTNQVD-LI 558
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
+Y ++T P L KL W + K+K K +I++M +L++LY R + +
Sbjct: 559 QKYVGADDT--PPKLHKLGGNE-WNKAKSKAKDSIKQMAEELIKLYATRESVSGFAFSAD 615
Query: 269 -PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
P EF FPYE TPDQ A +V+RD+ E PMDRL+CGDVG+GKTEVA+RA F
Sbjct: 616 SPWQKEFQDMFPYEETPDQLAAIEEVKRDM-ESPKPMDRLLCGDVGYGKTEVAMRAAFKA 674
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V GKQ VL PT +LA+QHF +ERF +P +K+ +SRF+S E++ L +K G +
Sbjct: 675 VMDGKQVAVLVPTTILAEQHFHTFAERFKPFP-VKIESISRFKSPTEQKHILTKLKTGEI 733
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+II+GTH LL + + +LGLLVVDEEQRFGV KEKI K +VDVLTL+ATPIPRTL+
Sbjct: 734 DIIIGTHRLLQKDIKFKDLGLLVVDEEQRFGVSHKEKIKQLKKNVDVLTLTATPIPRTLH 793
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+A++G RD S+I TPP +R PI+T++ ++ + AI EL R GQV+YV R++ + E
Sbjct: 794 MAMSGLRDMSIIETPPEDRFPIQTYVVEHNESLIRDAIMRELSRNGQVYYVYNRVQTIHE 853
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
L++ P IA+AHGQ +LEE M F + +L+CT I+ESGLDI N NT+I
Sbjct: 854 EAQKLKRLVPEARIAVAHGQMNEDELEEVMLGFYEHDYDVLVCTTIIESGLDIPNVNTLI 913
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
V + GL+QLYQLRGRVGR++++A AYL Y +LS+ A +RL+A+ E E G GF+
Sbjct: 914 VTSADRLGLSQLYQLRGRVGRSNRQAFAYLTYKKDKVLSEAAEKRLSAIREFTEFGSGFK 973
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDIN 687
+A KD+ IRG G I G +Q G + +G DL+ ++L ++ ++ +++D
Sbjct: 974 IALKDLEIRGAGNILGAEQHGHMMAIGYDLYTKLLAAAVKELKGEKEEEEIRPVLELD-- 1031
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
+N + +YI+ ME+ A+ + + E + ++G P L+
Sbjct: 1032 VNAYISDKYISKPALKMEIYQRI--ASVDTMEEVDDLEEEVEDRFGDIPEPTRNLIVISR 1089
Query: 748 VRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMI 782
+R +AA + I I G ++ +K + + K+ M+
Sbjct: 1090 IRVLAAKLRIASIIQQGDIINIKFHDSNKLTPEML 1124
>gi|431043717|ref|ZP_19493007.1| transcription-repair coupling factor [Enterococcus faecium E1590]
gi|430561305|gb|ELB00575.1| transcription-repair coupling factor [Enterococcus faecium E1590]
Length = 1173
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/555 (40%), Positives = 360/555 (64%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYINHLENPMEM 706
LP Y+ +E+
Sbjct: 1029 LPETYVADQRQKIEI 1043
>gi|270159982|ref|ZP_06188638.1| transcription-repair coupling factor [Legionella longbeachae D-4968]
gi|289165275|ref|YP_003455413.1| Transcription-repair coupling factor [Legionella longbeachae NSW150]
gi|269988321|gb|EEZ94576.1| transcription-repair coupling factor [Legionella longbeachae D-4968]
gi|288858448|emb|CBJ12326.1| Transcription-repair coupling factor [Legionella longbeachae NSW150]
Length = 1146
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 248/621 (39%), Positives = 367/621 (59%), Gaps = 15/621 (2%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS-RML 208
D LR G VVH + G+G++ G++ + + + E++ + YA G K+ V S ++
Sbjct: 475 DMAELRIGSPVVHLQFGVGRYQGLQH--IESNGMASEFLVLAYA-GEDKIYVPVTSLHLI 531
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
RY + P L KL + W+R K K I + ++L++LY R Q Y +
Sbjct: 532 SRYTGVDSEHAP--LHKLG-SDQWQREKKKAAEKIHDVAIELLDLYAKREAQPGHQYQVD 588
Query: 269 PA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
+ A+FA+ FP+ TPDQ A + +D+ E PMDRLICGDVGFGKTEVA+RA F
Sbjct: 589 HSDYAKFASGFPFTETPDQLNAIEQIIKDM-ESSKPMDRLICGDVGFGKTEVAMRAAFVA 647
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V + KQ VL PT +LA QHF+ +RF+ +P I + LLSRF+S E E L +K G +
Sbjct: 648 VQSNKQVCVLVPTTLLAGQHFESFRDRFADFP-INIELLSRFRSNKESEAVLAGLKSGTV 706
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH L S + + NLGLL++DEE RFGVKQKE I + + VD+L+++ATPIPRTL
Sbjct: 707 DIVIGTHKLFQSSIAFKNLGLLIIDEEHRFGVKQKEHIKALRTHVDILSMTATPIPRTLN 766
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+A+ G RD SL++TPP +RL IKT V AI E+ RGGQVF++ ++ +E
Sbjct: 767 MAMAGIRDISLMTTPPAKRLAIKTFWQEKKDPIVREAILREILRGGQVFFLHNNVETIER 826
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
+ LQ P I AHGQ R+LE M F +L+CT I+E+G+DI ANTII
Sbjct: 827 ICEDLQSLVPEAKIRSAHGQMRERELERVMSDFYHHRFNVLVCTTIIETGIDIPTANTII 886
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ +FGLAQL+QLRGRVGR+ +A+AYL P++ L+ A++RL A+ +LG GF
Sbjct: 887 IDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNQKSLTSDAVKRLEAIVSLEDLGAGFT 946
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCV--ISVP-YKSVQI 684
LA D+ IRG G + GE+Q+G++ +G +LF EML +++ + + +S P Y+ +I
Sbjct: 947 LATHDLEIRGAGELLGEEQSGNMHAIGFNLFMEMLDRAVNDLKAGKIPELSAPMYQGPEI 1006
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+ I+ +P +YI+ + N + M A ++ L L ++G P ++ LL
Sbjct: 1007 DLRISAVIPEDYISDVHNRLIMYKRISNA--KNTQQLHDLQIELIDRFGLLPQQVKHLLL 1064
Query: 745 KLYVRRMAADIGITKIYASGK 765
++ A +GI KI A +
Sbjct: 1065 ITELKLKAERMGIQKISAGAQ 1085
>gi|257888639|ref|ZP_05668292.1| transcription-repair coupling factor [Enterococcus faecium 1,141,733]
gi|257824693|gb|EEV51625.1| transcription-repair coupling factor [Enterococcus faecium 1,141,733]
Length = 1173
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/555 (40%), Positives = 360/555 (64%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYINHLENPMEM 706
LP Y+ +E+
Sbjct: 1029 LPETYVADQRQKIEI 1043
>gi|431763489|ref|ZP_19552039.1| transcription-repair coupling factor [Enterococcus faecium E3548]
gi|430622262|gb|ELB58999.1| transcription-repair coupling factor [Enterococcus faecium E3548]
Length = 1173
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/555 (40%), Positives = 360/555 (64%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYINHLENPMEM 706
LP Y+ +E+
Sbjct: 1029 LPETYVADQRQKIEI 1043
>gi|418676945|ref|ZP_13238223.1| transcription-repair coupling factor [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418687906|ref|ZP_13249063.1| transcription-repair coupling factor [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418742689|ref|ZP_13299059.1| transcription-repair coupling factor [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421090691|ref|ZP_15551482.1| transcription-repair coupling factor [Leptospira kirschneri str.
200802841]
gi|400322845|gb|EJO70701.1| transcription-repair coupling factor [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|410000573|gb|EKO51202.1| transcription-repair coupling factor [Leptospira kirschneri str.
200802841]
gi|410737330|gb|EKQ82071.1| transcription-repair coupling factor [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410750064|gb|EKR07047.1| transcription-repair coupling factor [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 1181
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 248/623 (39%), Positives = 388/623 (62%), Gaps = 21/623 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASRMLYRYN 212
L+ GDYVVH G+GKFV K + +++ +EY+ G + +P+ Q S ++ RY
Sbjct: 515 LKEGDYVVHIHHGVGKFV--KIERTSAGGKERDFLKLEYSGGDSLFVPLDQIS-LVQRYI 571
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI- 271
E+ R +L K + W++ K + + A++ + DL+++Y +RLK + +P +
Sbjct: 572 GGTESPRLDSLGK----STWKKTKDRVQKAVEALAEDLVQMYSNRLKLQGYAFPPDTIYQ 627
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A+F YE TPDQ +A V++DL E PMDRL+CGDVG+GKTEVA+RA F V AG
Sbjct: 628 EEFEAEFEYEETPDQIEAIEAVKKDL-ESSRPMDRLVCGDVGYGKTEVAIRAAFKVAMAG 686
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
+Q M+LAPT +LA QH++ RF YP ++V L+SRF++ AE + L G ++++V
Sbjct: 687 RQIMMLAPTTILALQHYNTFKNRFENYP-VRVELVSRFKTPAEIRDILADFSAGKVDMVV 745
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH++L S++ NLGLL++DEEQRFGV KE I FK VDVLTL+ATPIPRTL++ALT
Sbjct: 746 GTHAILSSKLKPKNLGLLIIDEEQRFGVNHKETIKKFKNLVDVLTLTATPIPRTLHMALT 805
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G R+ S+I+TPP R ++T++ + + AI+ E+ R GQVFY+ R++ +EE +
Sbjct: 806 GIRELSIIATPPKNRQSVETYVLEEEDDLIADAIRNEIQRDGQVFYLYNRVETIEEETSY 865
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
L + P V I I HGQ ++EET+ F IL+ T I+ESG+D+ N NT+ V+
Sbjct: 866 LNKLVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRA 925
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+QLYQ+RGRVGR+D++A AY+ P ++++QA +RL + E +ELG GF++A +
Sbjct: 926 DLFGLSQLYQIRGRVGRSDRKAFAYMLLPKDRVVTEQAEKRLNTIFEYQELGSGFKVAMR 985
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-EHCVISVPYKSVQIDININP 690
D+ IRG G + G++Q+GD+ VG DL+ ML ++++++ E V+ V + +N N
Sbjct: 986 DLEIRGAGNLLGKEQSGDIMEVGFDLYVRMLEDAIARIKGEEIVVEV---RTSVTLNTNF 1042
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME--ILLKKLYV 748
+P YI+ +E + E A +D+ + + + ++G+ P + ILL+K +
Sbjct: 1043 FIPETYISDTRQKIEFYKKLEGA--RDLDEIEEIYSEMLDRFGEPPEDAKTFILLEK--I 1098
Query: 749 RRMAADIGITKIYASGKMVGMKT 771
R +A+ +G + + MK+
Sbjct: 1099 RTLASSLGFESVTEMKDEIKMKS 1121
>gi|348176903|ref|ZP_08883797.1| transcription-repair coupling factor [Saccharopolyspora spinosa NRRL
18395]
Length = 1198
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 269/725 (37%), Positives = 404/725 (55%), Gaps = 57/725 (7%)
Query: 140 NGAGGFSYK------------VDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEY 187
G GG S K VDP +L++GD+VVH++ GIGK+V + +T EY
Sbjct: 484 GGRGGTSTKDMRRMPSRRRNAVDPLALKTGDFVVHEQHGIGKYVEMVQRTVGGATR--EY 541
Query: 188 VFIEYADGMAKLPVKQASRMLYRYNLPNETKR-----PRTLSKLSDTTAWERRKTKGKVA 242
+ +EYA P R+ + +E R TL+KL + W+ K K + A
Sbjct: 542 LVLEYAASKRGQP---GDRLFVPTDQLDEVTRYVGGEAPTLNKLGGSD-WKNTKAKARKA 597
Query: 243 IQKMVVDLMELYLHRLKQKRPPYP---KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTE 299
++++ +L++LY R Q P + P E FPY T DQ A +V+ D+ +
Sbjct: 598 VKEIAAELVQLYAAR--QSSPGHAFGADTPWQRELEDAFPYTETGDQMAAIDEVKADM-Q 654
Query: 300 RETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP 359
R PMDR+ICGDVG+GKTE+A+RA F V GKQ VL PT +LA+QH + ++R +P
Sbjct: 655 RPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLNTFTDRMRSFP 714
Query: 360 DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV 419
+ V LSRF + E EE + + G ++I++GTH LL + + Y +LGL++VDEEQRFGV
Sbjct: 715 -VTVKGLSRFTDQMESEETIRGLADGSVDIVIGTHRLLQTGIRYKDLGLVIVDEEQRFGV 773
Query: 420 KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKE 479
+ KE I + + VDVLT+SATPIPRTL +++ G R+ S I TPP ER PI T++ A+ ++
Sbjct: 774 EHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILTYVGAYDQK 833
Query: 480 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEK 539
+V +AI+ EL R GQVF+V R+ +E+ L++ P I AHGQ +LE+ ++
Sbjct: 834 QVAAAIRRELLRDGQVFFVHNRVHDIEKVARQLRELVPEGRIVTAHGQMNEDRLEKIIQG 893
Query: 540 FAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY 599
F + +L+CT IVE+GLDI NANT+IV GLAQL+QLRGRVGRA + +AY Y
Sbjct: 894 FWEREHDVLVCTTIVETGLDISNANTLIVDRSDLLGLAQLHQLRGRVGRARERGYAYFLY 953
Query: 600 PDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFF 659
P + L+D A +RLA + + ELG G +A KD+ IRG G I G +Q+G + VG DL+
Sbjct: 954 PPEKPLTDMAHDRLATIAQNSELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYV 1013
Query: 660 EMLFESLSKVDEHCVISVPYKS------VQIDININPRLPSEYINHLENPMEMVNEAEKA 713
++ E++ H P +S V++D+ I+ +P +Y+ +E + A
Sbjct: 1014 RLVGEAVDAFRRHAGAE-PGESEEELTEVRVDLPIDAHIPHDYVPGERLRLEAYRKL--A 1070
Query: 714 AEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASG--------- 764
A D L L +YG P +E LLK R++ + G++++ G
Sbjct: 1071 AAVDGEALDAVRAELVDRYGPLPEPVERLLKVARFRQVCREHGVSEVTLQGASLRVAPLA 1130
Query: 765 ----KMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQ 820
K V +K K V+K + +++ V R ++ G ++ A L + E LL+W +
Sbjct: 1131 LPDSKQVRLKRLYPKAVYKPAVRTVS--VPRPTVGAAGGRMGAPPLRD---EALLDWCSK 1185
Query: 821 CLAEL 825
L +L
Sbjct: 1186 FLEDL 1190
>gi|293571071|ref|ZP_06682112.1| transcription-repair coupling factor [Enterococcus faecium E980]
gi|430842702|ref|ZP_19460614.1| transcription-repair coupling factor [Enterococcus faecium E1007]
gi|431084336|ref|ZP_19496006.1| transcription-repair coupling factor [Enterococcus faecium E1604]
gi|431115418|ref|ZP_19497835.1| transcription-repair coupling factor [Enterococcus faecium E1613]
gi|431600920|ref|ZP_19522405.1| transcription-repair coupling factor [Enterococcus faecium E1861]
gi|431742255|ref|ZP_19531150.1| transcription-repair coupling factor [Enterococcus faecium E2039]
gi|291608854|gb|EFF38135.1| transcription-repair coupling factor [Enterococcus faecium E980]
gi|430492926|gb|ELA69267.1| transcription-repair coupling factor [Enterococcus faecium E1007]
gi|430564880|gb|ELB04057.1| transcription-repair coupling factor [Enterococcus faecium E1604]
gi|430568577|gb|ELB07617.1| transcription-repair coupling factor [Enterococcus faecium E1613]
gi|430590077|gb|ELB28162.1| transcription-repair coupling factor [Enterococcus faecium E1861]
gi|430600411|gb|ELB38060.1| transcription-repair coupling factor [Enterococcus faecium E2039]
Length = 1173
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/555 (40%), Positives = 360/555 (64%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYINHLENPMEM 706
LP Y+ +E+
Sbjct: 1029 LPETYVADQRQKIEI 1043
>gi|409122172|ref|ZP_11221567.1| transcription-repair coupling factor [Gillisia sp. CBA3202]
Length = 1134
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 242/630 (38%), Positives = 366/630 (58%), Gaps = 24/630 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
+L GDYV H GIGKF G+ K DV+ I+ + E + L + + + ++
Sbjct: 440 NLEVGDYVTHIDHGIGKFGGLQKIDVEGKMQEAIKLFYGER--DILYLSIHSLHK-ISKF 496
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
N + +P + KL + AW+ K K K ++ + +L+ELY R Q+ Y P +
Sbjct: 497 N--GKDGKPPKIYKLG-SNAWKNLKQKTKARVKHIAYNLIELYAKRRTQEGFQYGPDSYL 553
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E A F YE TPDQ A DV+ D+ E PMDRL+CGDVGFGKTEVA+RA F V
Sbjct: 554 QLELEASFLYEDTPDQSTATADVKADM-ESLRPMDRLVCGDVGFGKTEVAIRAAFKAVDN 612
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ VL PT +LA QH +ER +P + V L+RF++ E+ E L+ ++ G ++II
Sbjct: 613 GKQVAVLVPTTILAFQHHKTFTERLKDFP-VTVDYLNRFRTAKERRETLEDLEKGKVDII 671
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ V + +LGLL+VDEEQ+FGV K+K+ + K +VD LTL+ATPIPRTL +L
Sbjct: 672 IGTHQLVNKAVKFKDLGLLIVDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSL 731
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S I+TPPP R PI+T++ F +E + AI YE+ RGGQVF++ RI+ ++E
Sbjct: 732 MAARDLSTITTPPPNRYPIETNVIRFGEETIRDAISYEIQRGGQVFFIHNRIENIKEVAG 791
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P + + HGQ ++LE+ M F G +L+ T I+ESGLD+ NANTI + +
Sbjct: 792 MIQRLVPDAKVGVGHGQMEGKKLEKLMLSFMNGEFDVLVSTTIIESGLDVTNANTIFINN 851
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A Y P S ++D A +R+ ALE+ ELG G +A
Sbjct: 852 ANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTDDARKRITALEQFSELGSGINIAM 911
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEH-----------CVISVPY 679
KD+ IRG G + G +Q+G + +G D + ++L E++ ++ E+ V
Sbjct: 912 KDLEIRGAGDLLGGEQSGFMNEIGFDTYQKILNEAIEELKENEFKDLYEDTEDIEDKVYV 971
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
K QID + P +YIN++ + + + ++ L +F L ++G+ P
Sbjct: 972 KDTQIDTDFELLFPDDYINNITERLNLYTQLNNIKTEE--ELQKFEADLEDRFGELPIQA 1029
Query: 740 EILLKKLYVRRMAADIGITK-IYASGKMVG 768
LL + ++ +++ IG+ K I GK +G
Sbjct: 1030 IDLLNSVRIKWISSHIGLEKVILKHGKFIG 1059
>gi|345020766|ref|ZP_08784379.1| transcription-repair coupling factor [Ornithinibacillus scapharcae
TW25]
Length = 1175
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 232/594 (39%), Positives = 371/594 (62%), Gaps = 15/594 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRY 211
L+ GDYVVH GIG+++GI+ +VQ +Y+ ++Y+ D +P+ Q L +
Sbjct: 499 LKVGDYVVHTNHGIGRYLGIETLEVQGKHK---DYMLVKYSGDDKLFVPIDQID--LVKK 553
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
+ +E K P+ L KL + W + K K + +++ + DL++LY R +K + P
Sbjct: 554 YVGSEGKEPK-LYKLG-GSEWTKVKRKVQSSVEDIADDLIKLYAERQSRKGFAFSPDGEM 611
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF A FPY+ T DQ + ++++D+ E PMDRL+CGDVG+GKTEVA+RA F V+
Sbjct: 612 QREFDASFPYQETEDQLRCIEEIKQDM-ENIRPMDRLLCGDVGYGKTEVAIRAAFKAVAD 670
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF++ +++E +D +K G ++++
Sbjct: 671 GKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTPKQQKETIDGLKRGLVDVV 729
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH LL + + Y +LGLL+VDEEQRFGVK KEKI K ++DVLTL+ATPIPRTL++++
Sbjct: 730 IGTHRLLSTDIEYKDLGLLIVDEEQRFGVKHKEKIKQMKTNIDVLTLTATPIPRTLHMSM 789
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+I TPP R PI+T++ ++ + AI+ E+ R GQVF++ R++ +++
Sbjct: 790 LGVRDLSVIETPPENRFPIQTYVLEYNPVLIREAIEREMAREGQVFFLYNRVENIDKMAR 849
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+ P +A AHGQ +LE M F +G +L+ T I+E+G+DI N NT+IV D
Sbjct: 850 DIGMLVPEARVAFAHGQMNESELENVMFGFLEGEFDVLVSTTIIETGVDIPNVNTLIVYD 909
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A
Sbjct: 910 ADRMGLSQLYQLRGRVGRSNRVAYAYFTYKKDKVLTEVAEKRLQAIKEFTELGSGFKIAM 969
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL-SKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G + G QQ G + +VG D++ +ML E++ +K + + ++++ I+
Sbjct: 970 RDLSIRGAGNLLGAQQHGFIDSVGFDMYNQMLQEAIEAKKQGKEIEDIKPFDPELNLVID 1029
Query: 690 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+P YI ++M + + +D + + + L ++G P +E L
Sbjct: 1030 AYIPDSYIEDERQKIDMYKQFQTITSKD--DIRELQDELLDRFGDFPTEVENLF 1081
>gi|52841189|ref|YP_094988.1| transcription repair coupling factor [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|378776907|ref|YP_005185344.1| transcription repair coupling factor [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|52628300|gb|AAU27041.1| transcription repair coupling factor [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|364507721|gb|AEW51245.1| transcription repair coupling factor [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 1153
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 255/656 (38%), Positives = 382/656 (58%), Gaps = 16/656 (2%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRML 208
D LR G VVH + G+G++ G+++ + + T P E++ + YA D +PV + M+
Sbjct: 476 DMAELRLGAPVVHLQFGVGRYQGLQY-IDSNGT-PSEFLVLAYAGDDKIYVPVT-SLHMI 532
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
RY + P L KL + W++ K K I + ++L++LY R Q Y N
Sbjct: 533 SRYTGVDSEHAP--LHKLG-SEQWQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFN 589
Query: 269 PA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
+ +FA+ FP+ TPDQ +A + +D+ + PMDRLICGDVGFGKTEVA+RA F
Sbjct: 590 QSEYIKFASGFPFTETPDQLQAIEQIIKDM-QSPRPMDRLICGDVGFGKTEVAMRAAFVA 648
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V GKQ +LAPT +LA QHF+ +RF+ +P + + LLSRF+S E E L ++ G +
Sbjct: 649 VQNGKQVCILAPTTLLAGQHFESFRDRFADFP-VNIELLSRFRSNKESEAVLAALQSGKV 707
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH L + + + NLGLL++DEE RFGVKQKE I S + VD+L+++ATPIPRTL
Sbjct: 708 DIVIGTHKLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLN 767
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+A+ G RD SLI+TPP +RL IKT + + AI E+ RGGQVFY+ ++ +E
Sbjct: 768 MAMAGIRDISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYLHNNVQTIER 827
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
L+ P I AHGQ RQLE M F +L+CT I+E+G+DI ANTII
Sbjct: 828 VCQDLEALVPEAKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTANTII 887
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ +FGLAQL+QLRGRVGR+ +A+AYL P++ LL+ A++RL A+ +LG GF
Sbjct: 888 IDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFT 947
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVP-YKSVQI 684
LA D+ IRG G + GE+Q+G++ +G +LF EML +++ K + +S P ++ +I
Sbjct: 948 LATHDLEIRGAGELLGEEQSGNMHAIGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEI 1007
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+ I+ +P +YI + N + M A + L + L ++G P ++ L
Sbjct: 1008 DLRISAIIPEDYIGDIHNRLIMYKRIANA--KTTQQLRELQIELIDRFGLLPQPVKHLFL 1065
Query: 745 KLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ 800
++ A +GI KI AS + + + + + S+ +VH EG Q
Sbjct: 1066 ITELKLKAEQLGIQKISASAQQGKLDFSEKPSIDPGTLISLI-QVHAKRYQMEGPQ 1120
>gi|114800270|ref|YP_760685.1| transcription-repair coupling factor [Hyphomonas neptunium ATCC
15444]
gi|114740444|gb|ABI78569.1| transcription-repair coupling factor [Hyphomonas neptunium ATCC
15444]
Length = 1145
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/626 (40%), Positives = 359/626 (57%), Gaps = 18/626 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQA 204
S+ D SL GD VVH G+GK++G+K + + P + + +EYA G M +PV+
Sbjct: 431 SFITDATSLTPGDLVVHIDHGVGKYIGLK--TLEVTGAPHDCLQLEYAGGDMIFIPVENI 488
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRP 263
++ RY + L +L W+ RK K K I +M +LM++ R LK+
Sbjct: 489 D-LISRYGSEESESQ---LDRLGGA-GWQTRKAKAKKRILEMAAELMQIAAARELKRAEA 543
Query: 264 PYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
EFAA+FPYE T DQ A DV DL+ + PMDRL+CGDVGFGKTEVALRA
Sbjct: 544 VQSGQGLYEEFAARFPYEETDDQLSAIEDVLGDLSSGK-PMDRLVCGDVGFGKTEVALRA 602
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F +GKQ V+APT +LA+QHF ERF+ +P +KV LSRF E E D +
Sbjct: 603 AFVAAMSGKQVAVIAPTTLLARQHFKTFEERFAGWP-LKVRALSRFVGAREAAETRDGLA 661
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++++VGTH++L + + LGL++VDEEQRFGVK KE++ K V VLTLSATPIP
Sbjct: 662 SGSVDVVVGTHAVLSKDMNFKRLGLMIVDEEQRFGVKHKERLKELKSDVHVLTLSATPIP 721
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL +ALTG RD S+I+TPP +RL ++T+++ + A+ E RGGQ F+V PRI
Sbjct: 722 RTLQMALTGIRDLSIIATPPVDRLSVRTYITEEDTVTLREALLREKYRGGQAFFVAPRIT 781
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
L++ +FL+ P V +AHGQ + +LE+ M F +G +L+ T IVESGLDI A
Sbjct: 782 DLDKLENFLRTHVPEVSFIVAHGQMAAGELEDIMTAFYEGKYDVLLSTTIVESGLDIPRA 841
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I+ FGLAQLYQLRGRVGR+ A+AY P ++++ A +RL L+ LG
Sbjct: 842 NTLIIHRADMFGLAQLYQLRGRVGRSKLRAYAYFTTPKDKVVTESAEKRLKVLQSLDSLG 901
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML---FESLSKVDEHCVISVPYK 680
GFQLA D+ +RG G + G+QQ+G V VGV+L+ ML ++L
Sbjct: 902 AGFQLASHDLDMRGAGNLLGDQQSGQVKEVGVELYQSMLEDAVKALQAGARDDADVADDW 961
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
S QI++ + +P +Y++ L + + ++ QD F L ++G P
Sbjct: 962 SPQINLGVAVLIPEDYVDDLNVRLSLYRRLSDIITAQDREA---FAAELIDRFGPLPEPT 1018
Query: 740 EILLKKLYVRRMAADIGITKIYASGK 765
LL ++ +GI K+ A K
Sbjct: 1019 RQLLDVTAIKVSCKALGIAKLDAGEK 1044
>gi|150024302|ref|YP_001295128.1| transcription-repair coupling factor [Flavobacterium psychrophilum
JIP02/86]
gi|149770843|emb|CAL42308.1| Transcription-repair coupling factor [Flavobacterium psychrophilum
JIP02/86]
Length = 1117
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 240/629 (38%), Positives = 367/629 (58%), Gaps = 24/629 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
SL GDYV H GIGKF G+ K V+ + E + + YAD + + +Y
Sbjct: 435 SLVVGDYVTHIDHGIGKFGGLQKIQVEGKTQ---EAIKLAYADNDIVYVSIHSLHKISKY 491
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
+ P + KL + AW+ K K K ++ + +L++LY R K + P +
Sbjct: 492 T--GKDGAPPKIYKLG-SGAWKALKQKTKARVKHIAFNLIQLYAKRRLDKGFAFAPDSYL 548
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E + F YE TPDQ K+ +V+ D+ E + PMDRL+CGDVGFGKTEVA+RA F V
Sbjct: 549 QHELESSFIYEDTPDQLKSTQEVKADM-ESDRPMDRLVCGDVGFGKTEVAIRAAFKAVDN 607
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ +L PT +LA QH+ +ER P + + L+RF++ +K E L ++ G ++I+
Sbjct: 608 GKQVAILVPTTILAYQHYRTFTERLKDMP-VTINYLNRFKTAKQKAETLKDLEAGKVDIV 666
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ V++ +LGLL+VDEEQ+FGV K+K+ + +VD LTL+ATPIPRTL +L
Sbjct: 667 IGTHQLVSKNVIFKDLGLLIVDEEQKFGVNVKDKLKTITQNVDTLTLTATPIPRTLQFSL 726
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S+I+TPPP R PI+TH+ F++E + AI +E++RGGQVF++ RI+ ++E
Sbjct: 727 MAARDLSVITTPPPNRYPIETHVVGFNEETIRDAISFEIERGGQVFFINNRIENIKEVAG 786
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P + I HGQ ++LEE M F +G +L+ T I+ESGLD+ NANTI + +
Sbjct: 787 MIQRLVPDAKVGIGHGQMDGKKLEELMLAFMEGEFDVLVATTIIESGLDVPNANTIFINN 846
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A Y P S++++ A +R+ ALE+ ELG G +A
Sbjct: 847 ANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSVMTEDARKRIQALEQFSELGSGLNIAM 906
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML-----------FESLSKVDEHCVISVPY 679
KD+ IRG G + G +Q+G + +G D + +++ F+ L + D V
Sbjct: 907 KDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYENDNETVEKEYV 966
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
K +QID + P +YIN + + + N E++ L+++ + L ++G P
Sbjct: 967 KDLQIDSDFELLFPDDYINSVTERLALYNALAIIKEEN--GLLEYEKQLIDRFGPLPKQA 1024
Query: 740 EILLKKLYVRRMAADIGITK-IYASGKMV 767
LL L ++ +A IG+ K I GKMV
Sbjct: 1025 IALLNSLRIKWIATQIGVEKLILKQGKMV 1053
>gi|229083372|ref|ZP_04215723.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-44]
gi|228699937|gb|EEL52571.1| Transcription-repair-coupling factor [Bacillus cereus Rock3-44]
Length = 1176
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 239/611 (39%), Positives = 379/611 (62%), Gaps = 20/611 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
++ + + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQV--QKYVGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G +++++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDVVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPGLIREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPEARVTYAHGKMNEGELESVMLSFLDGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVPYKS 681
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ K E ++
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRKGTEGIENTI---D 1020
Query: 682 VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
V+ID+ ++ LP YI+ + + M + + I + + E + ++G P +
Sbjct: 1021 VEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVS--TIEDIEELQEEMIDRFGDYPQEVGY 1078
Query: 742 LLKKLYVRRMA 752
LL+ ++ +A
Sbjct: 1079 LLQIANIKVLA 1089
>gi|296271090|ref|YP_003653722.1| transcription-repair coupling factor [Thermobispora bispora DSM
43833]
gi|296093877|gb|ADG89829.1| transcription-repair coupling factor [Thermobispora bispora DSM
43833]
Length = 1164
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/624 (40%), Positives = 371/624 (59%), Gaps = 18/624 (2%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRM 207
VDP L+ GDYVVH++ G+G++V + + +T EY+ IEYA G +P Q
Sbjct: 484 VDPLQLKPGDYVVHEQHGVGRYVEMVQRTVQGATR--EYLVIEYAKGDRLYVPTDQLDE- 540
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-P 266
+ RY + ET TL+++ + W++ K++ + A++++ +L+ LY R+ + P
Sbjct: 541 VTRY-VGGETP---TLNRMGGSD-WQKTKSRARKAVREIAAELIRLYSARMASPGFAFSP 595
Query: 267 KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
P E FPY T DQ +A +V+RD+ ER PMDRLICGDVG+GKTE+A+RA F
Sbjct: 596 DTPWQREMEDAFPYVETKDQLEAIEEVKRDM-ERPVPMDRLICGDVGYGKTEIAVRAAFK 654
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
V GKQ VL PT +L QH ERF+ +P + V LSRFQS AE E LD ++ G
Sbjct: 655 AVQDGKQVAVLVPTTLLVHQHLSTFGERFAGFP-VTVRPLSRFQSDAEIRETLDGLREGT 713
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
+++++GTH LL V + +LGLL+VDEEQRFGV+ KE + + VDVL +SATPIPRTL
Sbjct: 714 VDVVIGTHRLLSPDVKFKDLGLLIVDEEQRFGVEHKEAMKRMRTEVDVLAMSATPIPRTL 773
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
+ LTG R+ S I TPP ER P+ T + + ++++ +AI+ EL R GQ F+V R++ ++
Sbjct: 774 EMGLTGIREMSTILTPPEERHPVLTFVGPYDEKQIAAAIRRELMRDGQTFFVHNRVRSID 833
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
L + P IA+AHGQ QLE+ M F + A +L+CT IVESGLD+ NANT+
Sbjct: 834 RVAARLAELVPEARIAVAHGQMNEAQLEKIMVDFWERAYDVLVCTTIVESGLDVPNANTL 893
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
IV +GLAQL+QLRGRVGR + +AY YP L++ A ERLA + + E+G G
Sbjct: 894 IVDRADSYGLAQLHQLRGRVGRGRERGYAYFLYPPDVPLTETAHERLATIAQHTEMGAGM 953
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYK--SVQI 684
+A KD+ IRG G I G +Q+G + VG DL+ M+ E++ + P + V++
Sbjct: 954 YVAMKDLEIRGAGNILGTEQSGHIAGVGFDLYVRMMAEAVEEQKSKLSGQAPKERPEVKV 1013
Query: 685 DININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
++ IN +P EY+ +E A +E+DI + E L +YG+ P +E LL
Sbjct: 1014 ELPINAHVPHEYVTSERLRLEAYKRIAAIESEEDIAAV---REELTDRYGRPPQEVENLL 1070
Query: 744 KKLYVRRMAADIGITKIYASGKMV 767
+ R A + G+T + G+ +
Sbjct: 1071 EVARFRIKAREAGLTDVTLQGRQI 1094
>gi|397663513|ref|YP_006505051.1| transcription-repair coupling factor [Legionella pneumophila subsp.
pneumophila]
gi|395126924|emb|CCD05107.1| transcription-repair coupling factor [Legionella pneumophila subsp.
pneumophila]
Length = 1153
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 249/621 (40%), Positives = 370/621 (59%), Gaps = 15/621 (2%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRML 208
D LR G VVH + G+G++ G+++ + + T P E++ + YA D +PV + M+
Sbjct: 476 DMAELRLGAPVVHLQFGVGRYQGLQY-IDSNGT-PSEFLVLAYAGDDKIYVPVT-SLHMI 532
Query: 209 YRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN 268
RY + P L KL + W++ K K I + ++L++LY R Q Y N
Sbjct: 533 SRYTGVDSEHAP--LHKLG-SDQWQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFN 589
Query: 269 PA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327
+ +FA+ FP+ TPDQ +A + +D+ + PMDRLICGDVGFGKTEVA+RA F
Sbjct: 590 QSEYIKFASGFPFTETPDQLQAIEQIIKDM-QSPRPMDRLICGDVGFGKTEVAMRAAFVA 648
Query: 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387
V GKQ +LAPT +LA QHF+ +RF+++P + + LLSRF+S E E L + G +
Sbjct: 649 VQNGKQVCILAPTTLLAGQHFESFRDRFAEFP-VNIELLSRFRSNKESEAVLAALHSGKV 707
Query: 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447
+I++GTH L + + + NLGLL++DEE RFGVKQKE I S + VD+L+++ATPIPRTL
Sbjct: 708 DIVIGTHKLFQNNISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLN 767
Query: 448 LALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507
+A+ G RD SLI+TPP +RL IKT + + AI E+ RGGQVFY+ ++ +E
Sbjct: 768 MAMAGIRDISLIATPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYLHNNVQTIER 827
Query: 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567
L+ P I AHGQ RQLE M F +L+CT I+E+G+DI ANTII
Sbjct: 828 VCQDLEALVPEAKIQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTANTII 887
Query: 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQ 627
+ +FGLAQL+QLRGRVGR+ +A+AYL P++ LL+ A++RL A+ +LG GF
Sbjct: 888 IDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFT 947
Query: 628 LAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS--KVDEHCVISVP-YKSVQI 684
LA D+ IRG G + GE+Q+G++ +G +LF EML +++ K + +S P ++ +I
Sbjct: 948 LATHDLEIRGAGELLGEEQSGNMHAIGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEI 1007
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
D+ I+ +P +YI + N + M A + L + L ++G P ++ L
Sbjct: 1008 DLRISAIIPEDYIGDIHNRLIMYKRIANA--KTTQQLRELQIELIDRFGLLPQPVKHLFL 1065
Query: 745 KLYVRRMAADIGITKIYASGK 765
++ A +GI KI AS +
Sbjct: 1066 ITELKLKAEQLGIQKISASAQ 1086
>gi|15896463|ref|NP_349812.1| transcription-repair coupling factor [Clostridium acetobutylicum ATCC
824]
gi|337738422|ref|YP_004637869.1| transcription-repair coupling factor [Clostridium acetobutylicum DSM
1731]
gi|384459932|ref|YP_005672352.1| Transcription-repair coupling factor, MFD (superfamily II helicase )
[Clostridium acetobutylicum EA 2018]
gi|15026288|gb|AAK81152.1|AE007817_6 Transcription-repair coupling factor, MFD (superfamily II helicase )
[Clostridium acetobutylicum ATCC 824]
gi|325510621|gb|ADZ22257.1| Transcription-repair coupling factor, MFD (superfamily II helicase )
[Clostridium acetobutylicum EA 2018]
gi|336292399|gb|AEI33533.1| transcription-repair coupling factor [Clostridium acetobutylicum DSM
1731]
Length = 1171
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/667 (38%), Positives = 407/667 (61%), Gaps = 19/667 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRY 211
L+ GDY+VH GIG F GIK +VQ +Y+ + YA D +PV+Q ++ +Y
Sbjct: 502 LKPGDYIVHVNHGIGVFKGIKQLEVQGHKK---DYLELSYAVDDKLYVPVEQLD-LVQKY 557
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAI 271
+ +E K P+ ++KL ++ W + K K + +I ++ +L++LY R Y K+
Sbjct: 558 -IGSEGKVPK-VNKLG-SSEWTKAKNKVRKSINEIAEELVKLYAVRTTVNGFKYSKDTVW 614
Query: 272 -AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F +FPY T DQ A +++ D+ E MDRLICGDVG+GKTEVA+RA F V
Sbjct: 615 QKQFEEEFPYNETQDQLLAIDEIKNDM-ESGKVMDRLICGDVGYGKTEVAIRAAFKTVMD 673
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH++ +RF +P ++V ++SRF+S+A+++ +K G+++II
Sbjct: 674 GKQVAFLVPTTILAEQHYNNFKKRFKDFP-VEVDMVSRFRSQAQQKATFKALKEGNIDII 732
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH +L + + +LGLL++DEEQRFGV KEK+ FK ++DVLTLSATPIPRTL+++L
Sbjct: 733 IGTHRILNKEITFKDLGLLIIDEEQRFGVSHKEKLKKFKKNIDVLTLSATPIPRTLHMSL 792
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG RD S+I TPP ER P++T++ ++ + + AI E+ R GQVF+V +++ ++E
Sbjct: 793 TGVRDISVIETPPEERYPVQTYVVEYNDQLIRDAIMREIGRDGQVFFVYNKVESIKEMAA 852
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L + P IAIAHGQ R+LE+ M F +G IL+CT I+E+G+DIQN NT+I+ +
Sbjct: 853 NLGKLIPEARIAIAHGQMSERELEKVMIDFMEGNYDILLCTTIIETGIDIQNVNTLIIYN 912
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GL+QLYQLRGRVGR ++ A+AY Y +L++ A +RL A++E +LG GF++A
Sbjct: 913 ADKMGLSQLYQLRGRVGRTNRMAYAYFTYKKDKILTEVAEKRLKAIKEFTQLGSGFKIAM 972
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G I G Q G + +G DL+ ML +++ ++ + + P ++ +D+ ++
Sbjct: 973 RDLEIRGAGNIMGSAQHGHMATIGYDLYCRMLEDTIKEIKGE-IQNEPVETT-VDLKVDA 1030
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIW-CLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+PS YI E+ ++ +K A D + +M E L ++ P S+ L+ Y+R
Sbjct: 1031 YIPSLYI---EDETLKISIYKKIAAIDSYEEMMDVKEELEDRFSSIPQSVNNLMTIAYLR 1087
Query: 750 RMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQ-IKAELLLE 808
+ +GI +I + +K N +V K +I+ + ++ L GD + L +
Sbjct: 1088 SIGRQLGILEIKDKMTQLEIKFESNDRVNKKLINGLLKNYSKSILFKMGDNPVILYNLKD 1147
Query: 809 LPREQLL 815
+ RE +L
Sbjct: 1148 VKREDML 1154
>gi|423456684|ref|ZP_17433534.1| transcription-repair coupling factor [Bacillus cereus BAG5X1-1]
gi|401128431|gb|EJQ36121.1| transcription-repair coupling factor [Bacillus cereus BAG5X1-1]
Length = 1176
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/615 (39%), Positives = 384/615 (62%), Gaps = 28/615 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GD+VVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDHVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPY 737
+V+ID+ ++ LP YI+ + + M + +A +DI + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGISAIEDIE---ELQEEMIDRFGDYPQ 1074
Query: 738 SMEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1075 EVGYLLQIANIKVLA 1089
>gi|297183227|gb|ADI19367.1| transcription-repair coupling factor (superfamily II helicase)
[uncultured Chloroflexi bacterium HF0500_03M05]
Length = 1192
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 258/640 (40%), Positives = 379/640 (59%), Gaps = 36/640 (5%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L GDYVVH + GIG+FVG + +D V EY+ ++YA+ +P+ R+ Y
Sbjct: 497 LNPGDYVVHVEHGIGRFVGTGH-IPRDE-VDREYLILQYAESDRLYVPMDHLDRVTA-YI 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PAI 271
P + R TL++L T W+R K + + +M +L+ LY R + +P + P
Sbjct: 554 APMD--RTPTLTRLG-TQMWKRTKERVAQSTHEMASELLSLYATREFAEGVAFPSDTPWQ 610
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E FPYE T DQ+ A +++ D+ E+ PMDRL+CGDVG+GKTE+ALRA F V AG
Sbjct: 611 IELEDSFPYEETRDQQTAIAEIKTDM-EQSRPMDRLVCGDVGYGKTEIALRAAFKAVMAG 669
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT VLA+QH+ S+R S YP +K+ LSRF+++ E+ + ++ + +G ++I +
Sbjct: 670 KQVAVLVPTTVLAQQHYVTFSQRLSAYP-VKIEALSRFRTEQEQRQIVEDLTNGKVDICI 728
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH L+ V + +LGL++VDEEQRFGV KE++ + V+VLT++ATPIPRTL+L+L
Sbjct: 729 GTHRLVQKDVKFKDLGLVIVDEEQRFGVVHKERLKQIRHEVEVLTMTATPIPRTLHLSLA 788
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S I TPP ERLPIKT++S FS E V AI+ E+DR GQVF++ R++ ++ ++
Sbjct: 789 GIRDMSTIDTPPEERLPIKTYVSEFSDELVREAIRREIDRQGQVFFLHNRVRNIDYMANY 848
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
++ P ++ IAHGQ QLE +M FA G +L+CT I+ESGLDI N NT+I+
Sbjct: 849 IRAMVPEAEVGIAHGQMPEDQLERSMIDFADGKTDVLVCTTIIESGLDIPNVNTLIINRS 908
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGLAQLYQLRGR+GR + A+AYL P S L++ A +RL + ELG GF++A K
Sbjct: 909 DTFGLAQLYQLRGRIGRGVRRAYAYLMIPPSSSLTELAEKRLKTMLAATELGAGFRIAMK 968
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK--------------------VDE 671
D+ IRG G I G QQ+G + +G DL+ ++L E++ + + E
Sbjct: 969 DLEIRGAGNILGAQQSGYIYAIGFDLYTKLLGEAVEELRARNTSIGFSDETDESGKWIQE 1028
Query: 672 HC---VISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESL 728
H SV V +D+ I +P +YI+ L + + + D C E L
Sbjct: 1029 HAGNIGASVTEMPVSVDLGIPANIPQQYISDLPTRLGIYRKLIDVKTIDGLC--SIDEEL 1086
Query: 729 RRQYGKEPYSMEILLKKLYVRRMAADIGITKIY-ASGKMV 767
++G+ P+ + LL + +R A + GI I GK+V
Sbjct: 1087 VDRFGQLPWQVRNLLYVVRLRFQADEAGIKSISREDGKIV 1126
>gi|260102336|ref|ZP_05752573.1| transcription-repair coupling factor [Lactobacillus helveticus DSM
20075]
gi|260083845|gb|EEW67965.1| transcription-repair coupling factor [Lactobacillus helveticus DSM
20075]
Length = 1165
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 235/592 (39%), Positives = 363/592 (61%), Gaps = 14/592 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIG+F GIK +++ V +Y+ I Y G +P Q S ++ +Y
Sbjct: 491 LKPGDYVVHVNHGIGRFEGIK--TLENNGVKRDYITITYQHGDQLFVPADQLS-LVQKY- 546
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K P ++KL + W + K K + ++ + DL+ELY R +K + P +
Sbjct: 547 VASEGKTPH-INKLG-GSEWAKIKRKVQSKVEDIADDLIELYAKRESEKGFAFSPDDDLQ 604
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
+F FPY TPDQ ++ +++ D+ E+ PMDRL+ GDVGFGKTEVALRA F +
Sbjct: 605 KQFEDAFPYAETPDQLRSIKEIKEDM-EKPKPMDRLVVGDVGFGKTEVALRAAFKAIQDN 663
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ LAPT +LA+QH++ + +RF +P + +LSRFQ+ AE +E ++ +K G ++++V
Sbjct: 664 KQVAFLAPTTILAQQHYETIQDRFKDFP-VNTAMLSRFQTPAESKEIIEGLKEGKIDLVV 722
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLL+VDEEQRFGVK KE++ K ++DVLTL+ATPIPRTL++++
Sbjct: 723 GTHRLLSKDVEFKDLGLLIVDEEQRFGVKHKERLKQLKANIDVLTLTATPIPRTLHMSMV 782
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S++ TPP R PI+T++ V A E+ R GQVFY+ RI ++E ++
Sbjct: 783 GVRDLSVMETPPQNRYPIQTYVMEQIPSVVRDACLREMQRDGQVFYLHNRISDIDETVEK 842
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
LQQ P IA AHG+ QLE+ + +F IL+ T I+E+G+DI N NT+I++D
Sbjct: 843 LQQLIPNARIASAHGRMSQNQLEDILYRFLNREFDILVTTTIIETGIDIPNVNTMIIEDA 902
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+ + ELG GF++A +
Sbjct: 903 DHYGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIAMR 962
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + +VG DL+ +ML +++ + +V + +ID+ +
Sbjct: 963 DLSIRGAGNMLGAQQHGFIDSVGYDLYSQMLSDAIK--ERKGKKTVKKSNAEIDLKLEAY 1020
Query: 692 LPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+P YI E +E + + Q+ L + + L ++G P ++E LL
Sbjct: 1021 IPDSYIGDQEEKIEFYKKIKAVNNQE--ELDKIEDELIDRFGDYPAAVENLL 1070
>gi|423556950|ref|ZP_17533253.1| transcription-repair coupling factor [Bacillus cereus MC67]
gi|401194029|gb|EJR01026.1| transcription-repair coupling factor [Bacillus cereus MC67]
Length = 1176
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/615 (39%), Positives = 384/615 (62%), Gaps = 28/615 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GD+VVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDHVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPY 737
+V+ID+ ++ LP YI+ + + M + +A +DI + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGISAIEDIE---ELQEEMIDRFGDYPQ 1074
Query: 738 SMEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1075 GVGYLLQIANIKVLA 1089
>gi|383313888|ref|YP_005374743.1| transcription-repair coupling factor [Corynebacterium
pseudotuberculosis P54B96]
gi|380869389|gb|AFF21863.1| Transcription-repair-coupling factor [Corynebacterium
pseudotuberculosis P54B96]
Length = 1264
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/699 (36%), Positives = 400/699 (57%), Gaps = 29/699 (4%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGI--KFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
+VDP +L++GD+VVH+ GIG+ + + + D T EY+ +EYA P Q
Sbjct: 513 RVDPLALKTGDFVVHETHGIGRSLKMTERTITSGDETSRREYIVLEYAPAKRGQPADQLF 572
Query: 206 RMLYRYNLPNE---TKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
+ +L ++ ++P LSK+ + W+ K K + A++++ +L+ELY R
Sbjct: 573 VPMDSLDLLSKYVGGEKP-ALSKMGGSD-WKNTKKKARAAVREIAGELVELYAKRQSAPG 630
Query: 263 PPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
P+ P +P E FPY T DQ A V+ D+ E+ PMDR+I GDVG+GKTEVA+
Sbjct: 631 HPFAPDSPWQYEMEDNFPYVETEDQMMAIEAVKADM-EKPVPMDRVIVGDVGYGKTEVAV 689
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F V GKQ +VL PT +LA+QH ER + +P + + LSRF S E +E +
Sbjct: 690 RAAFKAVQDGKQVVVLVPTTLLAQQHLSTFDERMAGFP-VNLRGLSRFTSTVEAKETIKG 748
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+ G ++I++GTH LL + + + NLGL++VDEEQRFGV+ KE I + + VDVLT+SATP
Sbjct: 749 LADGTVDIVIGTHRLLQTGIQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATP 808
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL +++ G R+ S I TPP +R PI T++ A +++ +AI+ EL R GQVF+V +
Sbjct: 809 IPRTLEMSMAGIREMSTILTPPEDRHPILTYVGAQEDKQIAAAIRRELLRDGQVFFVHNK 868
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
+ +E+ L++ P I +AHGQ LE+T++ F +L+CT IVE+GLDI
Sbjct: 869 VSDIEKKARDLRELVPEARIVVAHGQMSEELLEQTVQGFWDREFDVLVCTTIVETGLDIA 928
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP L++ + +RLA + + +
Sbjct: 929 NANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGQTLTENSYDRLATIAQNND 988
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEHCVISV 677
LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D V +
Sbjct: 989 LGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADGKIVDAT 1048
Query: 678 P--YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKE 735
K ++ID+ ++ +P YIN +E+ + AA Q L+ E + +YG
Sbjct: 1049 DDGLKEIRIDLPVDAHIPESYINAERLRLEVYRKL--AASQSNADLILAVEEMEDRYGPL 1106
Query: 736 PYSMEILLKKLYVRRMAADIGITKIYASG---KMVGMKTNMNKKV-FKMMIDSMTSEVHR 791
P ++ LL +R +A GI+ I G K+ ++ +K+V K ++ S T
Sbjct: 1107 PEEVKRLLAVARLRHLAKSAGISDIGVQGTRIKIHPVELPDSKQVRLKRLLPSATYRAAA 1166
Query: 792 NSLTF----EGDQIKAELLLELPREQLLNWIFQCLAELY 826
++ EG + + L ++ LL W+ L+E++
Sbjct: 1167 KAIQLSFPKEGRNVTDKPLRDV---ALLQWVADFLSEMF 1202
>gi|423520642|ref|ZP_17497115.1| transcription-repair coupling factor [Bacillus cereus HuA4-10]
gi|401180538|gb|EJQ87696.1| transcription-repair coupling factor [Bacillus cereus HuA4-10]
Length = 1176
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/615 (39%), Positives = 384/615 (62%), Gaps = 28/615 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GD+VVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDHVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPY 737
+V+ID+ ++ LP YI+ + + M + +A +DI + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGISAIEDIE---ELQEEMIDRFGDYPQ 1074
Query: 738 SMEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1075 EVGYLLQIANIKVLA 1089
>gi|424762091|ref|ZP_18189617.1| transcription-repair coupling factor [Enterococcus faecalis TX1337RF]
gi|402425819|gb|EJV57964.1| transcription-repair coupling factor [Enterococcus faecium TX1337RF]
Length = 1173
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/555 (40%), Positives = 360/555 (64%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREVGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYINHLENPMEM 706
LP Y+ +E+
Sbjct: 1029 LPETYVADQRQKIEI 1043
>gi|334882367|emb|CCB83366.1| transcription-repair coupling factor [Lactobacillus pentosus MP-10]
Length = 1175
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 251/679 (36%), Positives = 403/679 (59%), Gaps = 28/679 (4%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L+ GDYVVH GIGK+VG++ ++ D V +Y+ I Y + AK+ + L +
Sbjct: 495 DLKPGDYVVHVNHGIGKYVGME-TLEVDG-VHQDYITIAYQNN-AKIFIPVTQLNLVQKY 551
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ +E+K P+ ++KL T W + K K I+ + +L++LY R +K +P + +
Sbjct: 552 VSSESKTPK-INKLG-GTEWTKAKRKVAAKIEDIADELVDLYAKREAEKGYAFPPDDSYQ 609
Query: 273 E-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E F FPY TPDQ ++ +++ D+ ER PMDRL+ GDVG+GKTEVALRA F + AG
Sbjct: 610 EDFDNDFPYPETPDQLRSINEIKHDM-ERPKPMDRLLVGDVGYGKTEVALRAAFKAIEAG 668
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + RF YP I VG+LSRF++ E +E + +K+G L+I+V
Sbjct: 669 KQVAFLVPTTILAQQHYETMLNRFEGYP-INVGMLSRFRTSKEMKETVQQLKNGELDIVV 727
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLL++DEEQRFGVK KE++ S K SVDVLTL+ATPIPRTL++++
Sbjct: 728 GTHRLLSKDVAFADLGLLIIDEEQRFGVKHKERLKSLKASVDVLTLTATPIPRTLHMSML 787
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ A + + I+ E+ R GQVFY+ R+ +++ +
Sbjct: 788 GVRDLSVIETPPTNRYPIQTYVMAQNFGVIKEGIEREMQRNGQVFYLHNRVHDIDKVVAQ 847
Query: 512 LQQAFPGVDIAIAH--GQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569
++ P D A+AH GQ QLE + F +G +L+ T I+E+G+DI N NT+ V+
Sbjct: 848 IKDLVP--DAAVAHIDGQMPESQLEGILYDFIRGEYDVLVTTTIIETGVDIPNVNTLFVE 905
Query: 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629
+ + GL+QLYQLRGR+GR+ + A+AY Y +L++ +RL A+++ ELG GF++A
Sbjct: 906 NADRMGLSQLYQLRGRIGRSSRVAYAYFTYQQDKVLTEVGEKRLQAIKDFTELGSGFKIA 965
Query: 630 EKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININ 689
+D+ IRG G + G+QQ G + +VG DL+ +ML E+++K + ++ +++ I
Sbjct: 966 MRDLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLSEAVAK--KRGQVTKVKTDATVELGIE 1023
Query: 690 PRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
LP+ YI +E+ + D + +Q + L ++G P + LL ++
Sbjct: 1024 AYLPTSYIEDERQKIEIYKRIRQLENNDQYLEVQ--DDLMDRFGDYPVEVAGLLAVGKLK 1081
Query: 750 RMAADIGITKIYASGKMVGMKTNM-------NKKVFKMMIDSMTSEVHRNSLTFEGDQIK 802
+A D I KI + + + K +FK + + + ++ + D++K
Sbjct: 1082 MLADDALIEKIQREDSDLQLTLSQQGTAKLDTKDIFKALAKTKL----KATVGIDDDKMK 1137
Query: 803 AELLLELPREQLLNWIFQC 821
+L+++ P+ Q W+ Q
Sbjct: 1138 VKLVIQ-PKMQQDEWLEQL 1155
>gi|430856266|ref|ZP_19473965.1| transcription-repair coupling factor [Enterococcus faecium E1392]
gi|430545099|gb|ELA85093.1| transcription-repair coupling factor [Enterococcus faecium E1392]
Length = 1173
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 224/555 (40%), Positives = 360/555 (64%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR +++L + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INELGGS-EWTKTKRKVSSKIEDIADDLIKLYAARESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYINHLENPMEM 706
LP Y+ +E+
Sbjct: 1029 LPETYVADQRQKIEI 1043
>gi|395236668|ref|ZP_10414834.1| transcription-repair coupling factor (superfamily II helicase)
[Turicella otitidis ATCC 51513]
gi|423350426|ref|ZP_17328079.1| transcription-repair coupling factor [Turicella otitidis ATCC 51513]
gi|394488183|emb|CCI82922.1| transcription-repair coupling factor (superfamily II helicase)
[Turicella otitidis ATCC 51513]
gi|404387606|gb|EJZ82716.1| transcription-repair coupling factor [Turicella otitidis ATCC 51513]
Length = 1280
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 263/712 (36%), Positives = 397/712 (55%), Gaps = 55/712 (7%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQK--DSTVPIEYVFIEYADGMAKLPVKQ-- 203
+VDP +L+ GD+VVH+ GIG+FV + K + T EYV +EYA P Q
Sbjct: 534 RVDPLALKKGDFVVHETHGIGRFVKMAERTIKAGEETSRREYVVLEYAPSKRGQPADQLW 593
Query: 204 ----ASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK 259
+ +L +YN +ET +LSK+ + W+ K K + A++++ +L+ LY R
Sbjct: 594 VPMDSLDLLSKYN-GSETP---SLSKMGGSD-WKNTKKKARAAVREIAGELVNLYAKR-- 646
Query: 260 QKRPPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGK 316
Q P + P P E FP+ T DQ A +V+ D+ ER TPMDR++ GDVG+GK
Sbjct: 647 QAAPGHAFGPDTPWQRELEDNFPFVETEDQMTAIEEVKADM-ERATPMDRVVVGDVGYGK 705
Query: 317 TEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKE 376
TEVA+RA F V G Q VL PT +LA+QH ER + +P + + LSRF + AE +
Sbjct: 706 TEVAVRAAFKAVQDGTQVAVLVPTTLLAQQHMRTFEERMAGFP-VTIRQLSRFNTPAEAK 764
Query: 377 EHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLT 436
E + + G ++I+VGTH LL + V + NLGL+VVDEEQRFGV+ KE I + + VD+LT
Sbjct: 765 EVIAGLADGTIDIVVGTHRLLQTGVQWKNLGLVVVDEEQRFGVEHKEHIKALRAHVDMLT 824
Query: 437 LSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVF 496
+SATPIPRTL ++++G R+ S I TPP +R P+ T++ ++V +AI+ EL R GQVF
Sbjct: 825 MSATPIPRTLEMSMSGIREMSTILTPPEDRHPVLTYVGPQEDKQVAAAIRRELLRDGQVF 884
Query: 497 YVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556
++ ++K +E+ L+ P I +AHGQ LE T++ F L+CT IVE+
Sbjct: 885 FIHNKVKDIEKRARALRDLVPEARIVVAHGQMTEEALERTVQGFWDREYDALVCTTIVET 944
Query: 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAAL 616
GLDI NANT+IV++ GL+QL+QLRGRVGR+ + +AY YP LS+ + +RL+ +
Sbjct: 945 GLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPAGQTLSETSYDRLSTI 1004
Query: 617 EECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK----VDEH 672
+ +LG G +A KD+ +RG G + G QQ+G + VG DL+ ++ E++ D
Sbjct: 1005 AQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIEGVGFDLYMRLVGEAIDAYRALADGK 1064
Query: 673 CVISVPY--KSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLR 729
V + K +++D+ ++ +P +YIN +E + AE E D L LR
Sbjct: 1065 PVDATDQGPKEIRVDLPVDAHIPEKYINSERLRLEQYRKLAEAGGEDD---LQAIASELR 1121
Query: 730 RQYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEV 789
++G P +E L +R A GI I GM+ N K + DS +
Sbjct: 1122 DRFGTPPGEVERLFAVARLRLQARAAGIADI-------GMQGNRIKIHPVELSDSRQVRL 1174
Query: 790 HRNSLTFEGDQIKA---ELLLELPR------------EQLLNWIFQCLAELY 826
R + G I+A +L+ +P+ E+LL W+ L++L+
Sbjct: 1175 KR---LYPGATIRAAAQAVLVPMPKAGRTMGSPALRDEELLQWVVDFLSDLF 1223
>gi|163938061|ref|YP_001642945.1| transcription-repair coupling factor [Bacillus weihenstephanensis
KBAB4]
gi|163860258|gb|ABY41317.1| transcription-repair coupling factor [Bacillus weihenstephanensis
KBAB4]
Length = 1176
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/615 (39%), Positives = 384/615 (62%), Gaps = 28/615 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GD+VVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDHVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESLFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPY 737
+V+ID+ ++ LP YI+ + + M + +A +DI + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGISAIEDIE---ELQEEMIDRFGDYPQ 1074
Query: 738 SMEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1075 EVGYLLQIANIKVLA 1089
>gi|228989261|ref|ZP_04149254.1| Transcription-repair-coupling factor [Bacillus pseudomycoides DSM
12442]
gi|228770471|gb|EEM19042.1| Transcription-repair-coupling factor [Bacillus pseudomycoides DSM
12442]
Length = 1176
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 239/609 (39%), Positives = 377/609 (61%), Gaps = 16/609 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ DYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVDDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKNPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPGLIREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPEARVTYAHGKMNESELESVMLSFLDGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + I V+
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRQGTQGIENTI-DVE 1022
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ ++ LP YI+ + + M + + I + + E + ++G P + LL
Sbjct: 1023 IDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEMIDRFGDYPQEVGYLL 1080
Query: 744 KKLYVRRMA 752
+ ++ +A
Sbjct: 1081 QIANIKVLA 1089
>gi|423471701|ref|ZP_17448445.1| transcription-repair coupling factor [Bacillus cereus BAG6O-2]
gi|402430799|gb|EJV62873.1| transcription-repair coupling factor [Bacillus cereus BAG6O-2]
Length = 1176
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/615 (39%), Positives = 384/615 (62%), Gaps = 28/615 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GD+VVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDHVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPY 737
+V+ID+ ++ LP YI+ + + M + +A +DI + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGISAIEDIE---ELQEEMIDRFGDYPQ 1074
Query: 738 SMEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1075 EVGYLLQIANIKVLA 1089
>gi|229131061|ref|ZP_04259974.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST196]
gi|229165042|ref|ZP_04292838.1| Transcription-repair-coupling factor [Bacillus cereus AH621]
gi|423370758|ref|ZP_17348162.1| transcription-repair coupling factor [Bacillus cereus VD142]
gi|423520193|ref|ZP_17496674.1| transcription-repair coupling factor [Bacillus cereus HuA2-4]
gi|423595304|ref|ZP_17571334.1| transcription-repair coupling factor [Bacillus cereus VD048]
gi|228618427|gb|EEK75456.1| Transcription-repair-coupling factor [Bacillus cereus AH621]
gi|228652398|gb|EEL08322.1| Transcription-repair-coupling factor [Bacillus cereus BDRD-ST196]
gi|401073345|gb|EJP81770.1| transcription-repair coupling factor [Bacillus cereus VD142]
gi|401155458|gb|EJQ62868.1| transcription-repair coupling factor [Bacillus cereus HuA2-4]
gi|401222230|gb|EJR28827.1| transcription-repair coupling factor [Bacillus cereus VD048]
Length = 1176
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/615 (39%), Positives = 384/615 (62%), Gaps = 28/615 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GD+VVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDHVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESLFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPY 737
+V+ID+ ++ LP YI+ + + M + +A +DI + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGISAIEDIE---ELQEEMIDRFGDYPQ 1074
Query: 738 SMEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1075 EVGYLLQIANIKVLA 1089
>gi|319783816|ref|YP_004143292.1| DEAD/DEAH box helicase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317169704|gb|ADV13242.1| transcription-repair coupling factor [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 1165
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 257/631 (40%), Positives = 361/631 (57%), Gaps = 21/631 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRY 211
+L +GD VVH GIG+F+G++ + P + + I YA D LPV+ +L RY
Sbjct: 495 ALSAGDIVVHADHGIGRFIGLR--TIEAVGAPHDCLEIHYAGDDRLFLPVENIE-LLSRY 551
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
++T TL KL AW+ RK + + + M L+ + R + PP P
Sbjct: 552 G--SDTAEA-TLDKLGGG-AWQSRKARLRKRLLDMAGQLIRIAAERQMRSAPPLVPAEGL 607
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EFAA+FPYE T DQ+ A V DL + PMDRLICGDVGFGKTEVALRA F
Sbjct: 608 YGEFAARFPYEETDDQQTAIDSVRDDLAAGK-PMDRLICGDVGFGKTEVALRAAFIAAME 666
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
G Q V+ PT +L++QHF S+RFS P I+V SR E E I G ++I+
Sbjct: 667 GFQVAVVVPTTLLSRQHFKTFSQRFSGLP-IRVAQASRLVGAKELAETKKGIAEGQVDIV 725
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH+LLGS + + NLGLL++DEEQ FGVK KE++ K V VLTLSATPIPRTL LAL
Sbjct: 726 IGTHALLGSAISFKNLGLLIIDEEQHFGVKHKERLKDLKTDVHVLTLSATPIPRTLQLAL 785
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
TG R+ SLI+TPP +R+ ++T +S F + + E RGG FYV+PRI L E D
Sbjct: 786 TGVRELSLIATPPVDRMAVRTFISPFDPLVIRETLLRERYRGGHSFYVVPRISDLSEIHD 845
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
FL+++ P + +A+AHGQ +L++ M F G +L+ T IVESGLDI ANT+I+
Sbjct: 846 FLKESVPELKVAVAHGQMPPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTLIIHR 905
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+QLYQLRGRVGR+ A+A P L+D A RL L+ LG GFQLA
Sbjct: 906 ADMFGLSQLYQLRGRVGRSKVRAYALFTLPANRKLTDTAERRLKVLQSLDTLGAGFQLAS 965
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
D+ IRG G + GE+Q+G + VG +L+ +ML E++++V + + S QI +
Sbjct: 966 HDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKDSGEVQDGGWSPQIAVGTAV 1025
Query: 691 RLPSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
+P Y+ L+ + + + + E E D F L ++G P ++ LLK ++
Sbjct: 1026 MIPESYVPDLQLRLALYRRLGDLENTEEID-----AFGAELIDRFGPLPEEVKHLLKIVF 1080
Query: 748 VRRMAADIGITKIYASGKMVGMKTNMNKKVF 778
++ + + K+ A K G+ + K+ F
Sbjct: 1081 IKALCRKANVEKLDAGPK--GVVIHFRKREF 1109
>gi|229009563|ref|ZP_04166790.1| Transcription-repair-coupling factor [Bacillus mycoides DSM 2048]
gi|228751707|gb|EEM01506.1| Transcription-repair-coupling factor [Bacillus mycoides DSM 2048]
Length = 1176
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/615 (39%), Positives = 384/615 (62%), Gaps = 28/615 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GD+VVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDHVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESLFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPY 737
+V+ID+ ++ LP YI+ + + M + +A +DI + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGISAIEDIE---ELQEEMIDRFGDYPQ 1074
Query: 738 SMEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1075 EVGYLLQIANIKVLA 1089
>gi|94986749|ref|YP_594682.1| transcription-repair coupling factor [Lawsonia intracellularis
PHE/MN1-00]
gi|442555575|ref|YP_007365400.1| transcription-repair coupling factor [Lawsonia intracellularis N343]
gi|94730998|emb|CAJ54361.1| transcription-repair coupling factor (superfamily II helicase)
[Lawsonia intracellularis PHE/MN1-00]
gi|441493022|gb|AGC49716.1| transcription-repair coupling factor [Lawsonia intracellularis N343]
Length = 1155
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/609 (41%), Positives = 364/609 (59%), Gaps = 16/609 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVG-IKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRY 211
L GD +VHK G+ +F G I+ D+ K S +++ +EYA + LPV + S + R+
Sbjct: 485 LNPGDLLVHKNYGVARFGGLIRMDIGKISN---DFLLLEYAGNDKLYLPVDRLS-LTQRF 540
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK-NPA 270
NE+ P+ L +L +T+W+ K K K +I+K+ D++E+Y R K YP
Sbjct: 541 KSVNES-FPQ-LDRLG-STSWQASKDKAKKSIEKVAEDIIEMYAWRKVAKGFTYPPVGDL 597
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
EF A F +E TPDQ +A DV D+ E+ PMDRL+CGDVGFGKTEVALRA F S
Sbjct: 598 YREFEASFGFEETPDQARAIQDVLADM-EKSEPMDRLVCGDVGFGKTEVALRAAFRAASE 656
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
G+Q +L PT VLA+QH+ R S + I VGLLSRF +++E G ++++
Sbjct: 657 GRQVALLCPTTVLAEQHYYTFRSRLSGF-GINVGLLSRFVPLQKQKEIFKAASSGQIDVL 715
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
VGTH LL V NLGLL++DEEQRFGVK KEK+ K +VDVLTL+ATPIPRTL L++
Sbjct: 716 VGTHKLLSDSVSLPNLGLLILDEEQRFGVKHKEKLKKMKKNVDVLTLTATPIPRTLQLSM 775
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
+G + S+I T PPER P+ T + +KEK+ ++ EL R GQVF+V R++GLE+ ++
Sbjct: 776 SGICELSVIETAPPERKPVATAIIKKNKEKLKEILERELAREGQVFWVYNRVQGLEQIVN 835
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
F+++ P + +AHGQ +QLEE + F + IL+CT I+ESGLD ANT+IV
Sbjct: 836 FVKELVPEARVGVAHGQMPEKQLEENIHAFWHAELDILVCTAIIESGLDFPRANTLIVDQ 895
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL QLYQLRGRVGR+D++A+A D LS+QA ERL + E LG GFQ+A
Sbjct: 896 AHMFGLGQLYQLRGRVGRSDRQAYAVFVISDLESLSEQARERLRIILELDYLGAGFQVAM 955
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690
+D+ IRG G I GE Q+G + VG++L+ EML E+++K+ V S P ++ + +
Sbjct: 956 EDLRIRGAGNILGEAQSGHISRVGIELYLEMLEEAVTKLKGEGVTSYP--ETELTLGLTA 1013
Query: 691 RLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRR 750
+P YI+ + A Q + + LR ++G P ++ + L ++
Sbjct: 1014 HIPQNYISDSHERLRWYKALSSA--QSVMARNEIELELRDRFGVLPNELKAFIAVLNFKQ 1071
Query: 751 MAADIGITK 759
+ + K
Sbjct: 1072 FLTESQVIK 1080
>gi|404330857|ref|ZP_10971305.1| transcription-repair coupling factor [Sporolactobacillus vineae DSM
21990 = SL153]
Length = 1181
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 245/613 (39%), Positives = 378/613 (61%), Gaps = 20/613 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYRY 211
L++GDYVVH GIG++ GI+ + + V +Y+ I Y G KL PV+ + + +Y
Sbjct: 503 LKTGDYVVHVDHGIGRYAGIQ--TLEVNGVHKDYLEIIYK-GNDKLFVPVEHIGQ-VQKY 558
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 270
+ +E K P+ S + W++ K+K K ++Q + DL++LY R + + K+ PA
Sbjct: 559 -VGSEGKEPKIYS--LGGSEWKKVKSKAKSSVQDIADDLIKLYAKREASRGHAFAKDGPA 615
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
F A FPY+ T DQ +A ++++D+ E+E PMDRL+CGDVG+GKTEVALRA F +
Sbjct: 616 QRAFEAAFPYQETADQIQAIDEIKKDM-EKEKPMDRLLCGDVGYGKTEVALRAAFKAIED 674
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ L PT +LA+QH++ ERF +P + +G+LSRF++ E+ E L +K G ++++
Sbjct: 675 GKQVAFLVPTTILAQQHYETSMERFEDFP-VSIGVLSRFRTHKEQLETLRGLKAGTIDMV 733
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH LL VV+ +LGLL+VDEEQRFGV KEKI K +VDVLTL+ATPIPRTL++++
Sbjct: 734 IGTHRLLSKDVVFKDLGLLIVDEEQRFGVTHKEKIKRLKANVDVLTLTATPIPRTLHMSI 793
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+I TPP R P++T+++ +++ V AI+ E+ RGGQV+++ R++ ++ D
Sbjct: 794 MGVRDLSIIETPPENRFPVQTYVTEYNETLVREAIEREMARGGQVYFLYNRVESIQRMAD 853
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+ P + AHGQ +LE M F G +L+ T I+E G+DI N NT+IV D
Sbjct: 854 LISTLVPDASVTFAHGQMKESELEAAMIDFLDGTADVLVSTTIIEEGVDIPNVNTLIVYD 913
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
+ GLAQLYQLRGRVGR+++ A+AY Y ++++ A +RL A++E ELG GF++A
Sbjct: 914 ADKMGLAQLYQLRGRVGRSNRVAYAYFTYQRDKVMNEVAEKRLQAIKEFTELGSGFKIAM 973
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VDEHCVISVPYKSVQIDIN 687
+D+ IRG G + G QQ G + +VG DL+ +ML +++ K V E V SV I+++
Sbjct: 974 RDLSIRGAGNLLGAQQHGFMDSVGFDLYSQMLKDAVRKRQGVQETLDRPV---SVSIEMD 1030
Query: 688 INPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLY 747
++ +P YI ++M + + + + L +YG P + LLK
Sbjct: 1031 VDAYIPDSYIGDSLQKIDMYKRFQSV--DTLQSVRDLEDELIDRYGSFPEEVSELLKVAT 1088
Query: 748 VRRMAADIGITKI 760
+R +A + I +I
Sbjct: 1089 LRVIANQLRIEEI 1101
>gi|227552670|ref|ZP_03982719.1| transcription-repair coupling factor [Enterococcus faecium TX1330]
gi|257897406|ref|ZP_05677059.1| transcription-repair coupling factor [Enterococcus faecium Com12]
gi|293378835|ref|ZP_06624990.1| transcription-repair coupling factor [Enterococcus faecium PC4.1]
gi|227178199|gb|EEI59171.1| transcription-repair coupling factor [Enterococcus faecium TX1330]
gi|257833971|gb|EEV60392.1| transcription-repair coupling factor [Enterococcus faecium Com12]
gi|292642376|gb|EFF60531.1| transcription-repair coupling factor [Enterococcus faecium PC4.1]
Length = 1173
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/555 (40%), Positives = 360/555 (64%), Gaps = 11/555 (1%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRMLYRYN 212
L++GDYVVH GIGK++G++ ++ D V +Y+ I Y D +PV Q + ++ +Y
Sbjct: 498 LKAGDYVVHANHGIGKYIGME-TLEVDG-VHQDYMTILYQNDDKLFIPVTQLN-LIQKY- 553
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ +E K PR ++KL + W + K K I+ + DL++LY R +K + P +
Sbjct: 554 VASEAKAPR-INKLGGS-EWTKTKRKVSSKIEDIADDLIKLYAVRESEKGYAFGPDDAYQ 611
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF FPY T DQ ++ +++RD+ E+E PMDRL+ GDVG+GKTEVALRA F +
Sbjct: 612 KEFENAFPYSETDDQLRSAAEIKRDM-EKEKPMDRLLVGDVGYGKTEVALRAAFKAIKES 670
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ + ERF +P + +GLLSRF+++ +++E ++ ++ G ++I+V
Sbjct: 671 KQVAFLVPTTILAQQHYETMLERFEGFP-VNIGLLSRFRTRKQQKETIEQLRTGQVDIVV 729
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH +L + +++LGLL++DEEQRFGVK KE++ + VDVLTL+ATPIPRTL++++
Sbjct: 730 GTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSML 789
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R PI+T++ + + AI E+ RGGQVFY+ R++ +E+ ++
Sbjct: 790 GVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRVETIEQKVEE 849
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P I AHGQ QLE T+ +F +G +L+ T I+E+G+DI NANT+ V++
Sbjct: 850 IQELVPEARIGYAHGQMTEAQLENTLFEFIEGQYDVLVTTTIIETGVDIPNANTLFVENA 909
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
GL+ LYQLRGRVGR+ + A+AY Y + +L++ + +RL A+++ ELG GF++A +
Sbjct: 910 DYMGLSTLYQLRGRVGRSSRVAYAYFMYEQQKILNEVSEKRLQAIKDFTELGSGFKIAMR 969
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G + G QQ G + VG D++ +ML E++S+ + V +V+ID+ ++
Sbjct: 970 DLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVSR-KQGKNSQVEKTTVEIDLGVDAY 1028
Query: 692 LPSEYINHLENPMEM 706
LP Y+ +E+
Sbjct: 1029 LPETYVADQRQKIEI 1043
>gi|429462630|ref|YP_007184093.1| transcription-repair coupling factor [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei ATCC
30255)]
gi|451811614|ref|YP_007448069.1| superfamily II transcription-repair coupling factor [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|429338144|gb|AFZ82567.1| transcription-repair coupling factor [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei ATCC
30255)]
gi|451776772|gb|AGF47771.1| superfamily II transcription-repair coupling factor [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 1154
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 239/622 (38%), Positives = 370/622 (59%), Gaps = 29/622 (4%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVG-IKFDVQKDSTVPIEYVFIEYADGMA-KLPVKQASRM 207
D L GD VVH + G+G++ G + +V +D +E++ +EYA +P+ + +
Sbjct: 479 DIAELSIGDPVVHYQYGVGRYKGLVNMNVGQDQ---MEFLHLEYAKKTNLYVPITNLN-L 534
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYP 266
+ RY + P L +L T WE++ K I +L+++Y R LK+
Sbjct: 535 ISRYIGIDPENAP--LHQLGSDT-WEKKYKKAIQQIHDTAAELLDIYSKRALKKGHAFLS 591
Query: 267 KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
N +F F + T DQ++A V +D++ E PMDRL+CGDVGFGKTEVALRA F
Sbjct: 592 NNDDYNKFVEDFEFTETIDQEQAIQSVLKDMS-LEKPMDRLVCGDVGFGKTEVALRASFI 650
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
VS KQ ++L PT +LA+QH S+RF+ +P IK+ LSR +S+ E + I G
Sbjct: 651 AVSNNKQVIILCPTTLLAEQHTQTFSKRFANWP-IKISELSRMKSRKEILHTISAINDGI 709
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
++II+GTH +L S + + NLGL+V+DEE RFGV+QKE + + VDVL+L+ATPIPRTL
Sbjct: 710 VDIIIGTHKILSSEIKFKNLGLVVIDEEHRFGVRQKEMFKNIRSEVDVLSLTATPIPRTL 769
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
++L G RD S+I+T P +RLPIKT + ++ AI+ E+ RGGQV+++ I +
Sbjct: 770 SMSLEGIRDFSIITTAPQKRLPIKTFIRYQDNSIIVEAIRREIRRGGQVYFLHNEISTIH 829
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
D ++Q P + +AIAHGQ +R LE M+ F Q +L+CT I+E+G+DI NANTI
Sbjct: 830 NKKDLIEQLLPEIKVAIAHGQMLARNLENIMKDFCQKKYDVLLCTTIIENGIDIPNANTI 889
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
I+ FGLAQL+QLRGRVGR+ +A+AYL P++ ++ QA +RL A++ +LG GF
Sbjct: 890 IINRADTFGLAQLHQLRGRVGRSHHQAYAYLLIPNEGSITSQANKRLNAIQNMEDLGSGF 949
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEH-----CVISVPYKS 681
LA D+ IRG G I GE Q+G++ +G L+ EML E+++K+ + +++P S
Sbjct: 950 YLALHDLEIRGSGEILGESQSGNIQEIGYSLYNEMLSEAIAKIKDGKETNLTHLTIP-AS 1008
Query: 682 VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEP----- 736
+I++ ++ LPSEY + + + A +D +Q+ + ++GK P
Sbjct: 1009 CEINLGVSSILPSEYCPDISARLALYKRLSHAHNEDEILKIQY--EIEDRFGKLPDPAEN 1066
Query: 737 ----YSMEILLKKLYVRRMAAD 754
+ + IL KL+++++ +
Sbjct: 1067 LIITHKLRILADKLHIKKLIVE 1088
>gi|239906714|ref|YP_002953455.1| transcription-repair coupling factor [Desulfovibrio magneticus RS-1]
gi|239796580|dbj|BAH75569.1| transcription-repair coupling factor [Desulfovibrio magneticus RS-1]
Length = 1148
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/632 (38%), Positives = 364/632 (57%), Gaps = 20/632 (3%)
Query: 130 AGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVF 189
G+ D + G F +R GD VVH+ G+ F G+ + D+T +Y+
Sbjct: 463 GGSERADKDFKGLASFD------DIRPGDLVVHRDYGVATFEGLT-RMTVDATGG-DYLL 514
Query: 190 IEYAD-GMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVV 248
+ +AD LP + +L RY P P L +L W+ + + K A++++
Sbjct: 515 LVFADEDKLYLPADRLG-LLQRYKGPEGISPP--LDRLGGAR-WKSVRERAKKAVERIAA 570
Query: 249 DLMELYLHRLKQKRPPY-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRL 307
DL+E+Y +R K Y P N EF A F +E TPDQ++A +V D+ ER PMDRL
Sbjct: 571 DLVEMYAYRQVAKGYAYGPTNELYLEFEATFGFEETPDQERAIGEVLADM-ERPEPMDRL 629
Query: 308 ICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLS 367
+CGDVGFGKTEVALRA F V GKQ +L PT VLA+QH+ + R +P ++V +LS
Sbjct: 630 VCGDVGFGKTEVALRAAFRAVLDGKQVAMLCPTTVLAEQHYQNFAARLEGFP-VRVEMLS 688
Query: 368 RFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIAS 427
RF S ++ L+ + G ++I+VGTH +L S V N+GLL++DEEQRFGVK KE++ +
Sbjct: 689 RFVSPKRRKVVLEAVSRGEVDILVGTHRILSSDVAIPNIGLLILDEEQRFGVKHKERLKA 748
Query: 428 FKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKY 487
FK ++D LTL+ATPIPRTL L+L+G R S+I TPPP+R + T L + + ++
Sbjct: 749 FKKNIDALTLTATPIPRTLQLSLSGVRGLSVIETPPPDRKTVDTALVERDEGFLREVLRR 808
Query: 488 ELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKI 547
ELDR GQVF+V R++GLE+ +++ PG +A+AHGQ LEE M F G I
Sbjct: 809 ELDRQGQVFWVHNRVQGLEDVTAYVKTLAPGAKVAMAHGQMSETALEEAMHGFWHGETDI 868
Query: 548 LICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSD 607
L+CT+I+ESGLD ANT+IV + FGL QLYQLRGRVGR+ ++A+AY P + +
Sbjct: 869 LVCTSIIESGLDFPRANTLIVDNAHMFGLGQLYQLRGRVGRSPRQAYAYFVVPSIEKVPE 928
Query: 608 QALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS 667
A +RL + + LG GFQ+A +D+ +RG G I GE Q+G + +G+D+F EML E +
Sbjct: 929 LARKRLRVILDMDYLGAGFQVAMEDLRLRGAGNILGEAQSGHIARIGLDMFLEMLAEEVR 988
Query: 668 KVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTES 727
++ + ++ + I R+P Y+ + + + A ++ L +
Sbjct: 989 RLKGEPIKE--RIETELTLGIAARIPERYVPEASDRLRLYKALSTAKTEE--RLAEIAAE 1044
Query: 728 LRRQYGKEPYSMEILLKKLYVRRMAADIGITK 759
+R ++G P ++ L +++ +G TK
Sbjct: 1045 MRDRFGSPPAEVDNFRSVLAFKQVLGRLGATK 1076
>gi|138893727|ref|YP_001124180.1| transcription-repair coupling factor [Geobacillus thermodenitrificans
NG80-2]
gi|134265240|gb|ABO65435.1| Transcription-repair coupling factor [Geobacillus thermodenitrificans
NG80-2]
Length = 1177
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 242/611 (39%), Positives = 378/611 (61%), Gaps = 17/611 (2%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYN 212
L+ GDYVVH GIGK++GI + + + V +Y+ I+Y G +PV Q ++ +
Sbjct: 500 LQVGDYVVHVNHGIGKYLGI--ETLEINGVHKDYIHIQYQGGDTLYVPVDQMDQV--QKY 555
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIA 272
+ +E K P+ + KL T W++ K K + ++Q + DL++LY R K + ++ +
Sbjct: 556 VGSEGKEPK-IYKLGGTE-WKKVKKKVESSVQDIAEDLIKLYAEREASKGYAFSQDTEMQ 613
Query: 273 -EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
EF A FPY+ T DQ ++ +++RD+ E E PMDRL+CGDVG+GKTEVALRA F + G
Sbjct: 614 REFEAAFPYQETEDQLRSIEEIKRDM-ESEKPMDRLLCGDVGYGKTEVALRAAFKAIMDG 672
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ L PT +LA+QH++ V ERF +P I VG+L+RF+++ ++ E + +K G +++++
Sbjct: 673 KQVAFLVPTTILAQQHYETVRERFQGFP-INVGVLNRFRTRKQQAETIKGLKDGTIDMVI 731
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH LL V + +LGLL++DEEQRFGV KEKI K ++DVLTL+ATPIPRTL++++
Sbjct: 732 GTHRLLSKDVKFKDLGLLIIDEEQRFGVAHKEKIKQLKANIDVLTLTATPIPRTLHMSMI 791
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
G RD S+I TPP R P++T++ ++ E V AI+ EL R GQVF++ I+ ++ +
Sbjct: 792 GVRDLSIIETPPENRFPVQTYVMEYTPELVKEAIERELARDGQVFFLYNHIEDIDLRAEE 851
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+ Q P + AHG+ +LE T+ F +G +L+ T I+E+G+DI N NT+IV D
Sbjct: 852 IAQLVPEARVTFAHGRMSEAELESTILAFLEGQYDVLVTTTIIETGVDIPNVNTLIVYDA 911
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
+ GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG GF++A +
Sbjct: 912 DRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNETAEKRLQAIKEFTELGSGFKIAMR 971
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691
D+ IRG G I G +Q G + +VG DL+ +ML E++ K V ID+ ++
Sbjct: 972 DLSIRGAGNILGAEQHGFIDSVGFDLYSQMLKEAIEK-RRGLKQEEERPDVVIDVEVDAY 1030
Query: 692 LPSEYINHLENPMEMVNEAEKAAE--QDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVR 749
+P YI+ +EM KA E +D+ L E + ++G P + L + ++
Sbjct: 1031 IPDTYISDGLQKIEMYKRF-KAVETLEDVEML---REEMADRFGDYPDEVAYLFQIAEIK 1086
Query: 750 RMAADIGITKI 760
+A +G+ I
Sbjct: 1087 ALAKQLGVESI 1097
>gi|300770435|ref|ZP_07080314.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
ATCC 33861]
gi|300762911|gb|EFK59728.1| transcription-repair coupling factor [Sphingobacterium spiritivorum
ATCC 33861]
Length = 1112
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 245/637 (38%), Positives = 370/637 (58%), Gaps = 23/637 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRY 211
L+ GDY+ H G+GK+ G+ K DV S I V YAD + + + +R + +Y
Sbjct: 436 LKPGDYITHIDHGVGKYAGLEKVDVNGKSQEMIRLV---YADNDLLYVNINSLNR-ISKY 491
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
+ E P+ ++KL T WE+ K K ++ + DL++LY R Q + P
Sbjct: 492 S-GKEGAVPK-MNKLG-TDTWEKLKKTTKRKVKDIARDLIKLYAKRKAQTGNAFSPDTYL 548
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E A F YE TPDQ+KA DV+RD+ E PMDRLICGDVGFGKTEVA+RA F V+
Sbjct: 549 QNELEASFIYEDTPDQEKATADVKRDM-ESPHPMDRLICGDVGFGKTEVAIRAAFKAVAD 607
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
KQ VL PT +LA QH+ +ER P + ++RF++ + +E L + G ++I+
Sbjct: 608 SKQVAVLVPTTILALQHYRTFTERLKGLP-CNIDYVNRFKTTKQIKETLAKLTEGKIDIL 666
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ V + +LGL+++DEEQ+FGV KEK+ + +VD LTL+ATPIPRTL+ +L
Sbjct: 667 IGTHRLVSKDVKFKDLGLMIIDEEQKFGVSVKEKLKVMRANVDSLTLTATPIPRTLHFSL 726
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+ISTPPP R P++T L F++ + A+ YELDRGGQVF++ R+ L++
Sbjct: 727 MGARDLSIISTPPPNRQPVQTELHVFNETLIQEAVSYELDRGGQVFFIHNRVADLKQLGA 786
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ PG + +AHGQ LE+ M KF +L+ T I+E+GLDI NANTI++
Sbjct: 787 LIQKLVPGARVGVAHGQLEGDDLEDVMLKFISHEFDVLVATTIIEAGLDIPNANTIMINH 846
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A YL P S L+ +A +RL+A+EE ELG GF +A
Sbjct: 847 AHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSTLTSEAYKRLSAIEEFSELGSGFNVAM 906
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKV--DEHCVISVPYKS------V 682
+D+ IRG G + G +Q+G + +G +++ ++L E++ ++ DE + K
Sbjct: 907 RDLDIRGSGNLLGAEQSGFIAEIGFEMYHKILDEAIQELKDDEFTDLFADEKERKYVSFT 966
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
QID ++ +P EY+ ++ + E K ++ L F S+ ++G P + L
Sbjct: 967 QIDTDLEVLIPDEYVTNISERYNLYTELSKLENEE--QLTAFARSMEDRFGPIPREVFEL 1024
Query: 743 LKKLYVRRMAADIGITKI-YASGKMVGMKTNMNKKVF 778
L ++ IG+ KI Y + G N K +
Sbjct: 1025 FNTLRLQWYGKQIGLEKISYKKNTLKGFFLNNPKSSY 1061
>gi|228995444|ref|ZP_04155114.1| Transcription-repair-coupling factor [Bacillus mycoides Rock3-17]
gi|228764305|gb|EEM13182.1| Transcription-repair-coupling factor [Bacillus mycoides Rock3-17]
Length = 1183
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 238/610 (39%), Positives = 376/610 (61%), Gaps = 16/610 (2%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ DYVVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 500 RIKSYSELKVDDYVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 556
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
++ + + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 557 DQV--QKYVGSEGKNPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 612
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 613 YTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 671
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 672 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 730
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 731 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 790
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 791 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPGLIREAIERELARGGQIYFLYNRVE 850
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F G +L+ T I+E+G+DI N
Sbjct: 851 DIERKADEISMLVPEARVTYAHGKMNESELESVMLSFLDGQHDVLVSTTIIETGVDIPNV 910
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 911 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 970
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + I V+
Sbjct: 971 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRQGTQGIENTI-DVE 1029
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ ++ LP YI+ + + M + + I + + E + ++G P + LL
Sbjct: 1030 IDLEVDAYLPDAYISDSKQKIMMYKQFRGVSA--IEDIEELQEEIIDRFGDYPQEVGYLL 1087
Query: 744 KKLYVRRMAA 753
+ ++ +A
Sbjct: 1088 QIANIKVLAT 1097
>gi|423485305|ref|ZP_17461992.1| transcription-repair coupling factor [Bacillus cereus BAG6X1-2]
gi|401135882|gb|EJQ43478.1| transcription-repair coupling factor [Bacillus cereus BAG6X1-2]
Length = 1176
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/615 (39%), Positives = 385/615 (62%), Gaps = 28/615 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GD+VVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDHVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKDPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESLFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A +RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPY 737
+V+ID+ ++ LP YI+ + + M + +A +DI + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGISAIEDIE---ELQEEMIDRFGDYPQ 1074
Query: 738 SMEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1075 EVGYLLQIANIKVLA 1089
>gi|229053900|ref|ZP_04195335.1| Transcription-repair-coupling factor [Bacillus cereus AH603]
gi|228721441|gb|EEL72961.1| Transcription-repair-coupling factor [Bacillus cereus AH603]
Length = 1176
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/615 (39%), Positives = 384/615 (62%), Gaps = 28/615 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GD+VVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDHVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESLFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPY 737
+V+ID+ ++ LP YI+ + + M + +A +DI + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGISAIEDIE---ELQEEMIDRFGDYPQ 1074
Query: 738 SMEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1075 EVGYLLQIANIKVLA 1089
>gi|423490668|ref|ZP_17467350.1| transcription-repair coupling factor [Bacillus cereus BtB2-4]
gi|423496408|ref|ZP_17473052.1| transcription-repair coupling factor [Bacillus cereus CER057]
gi|423496798|ref|ZP_17473415.1| transcription-repair coupling factor [Bacillus cereus CER074]
gi|423597223|ref|ZP_17573223.1| transcription-repair coupling factor [Bacillus cereus VD078]
gi|423659628|ref|ZP_17634797.1| transcription-repair coupling factor [Bacillus cereus VDM022]
gi|401149138|gb|EJQ56617.1| transcription-repair coupling factor [Bacillus cereus CER057]
gi|401163979|gb|EJQ71319.1| transcription-repair coupling factor [Bacillus cereus CER074]
gi|401239564|gb|EJR45989.1| transcription-repair coupling factor [Bacillus cereus VD078]
gi|401304647|gb|EJS10197.1| transcription-repair coupling factor [Bacillus cereus VDM022]
gi|402429013|gb|EJV61104.1| transcription-repair coupling factor [Bacillus cereus BtB2-4]
Length = 1176
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/615 (39%), Positives = 384/615 (62%), Gaps = 28/615 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GD+VVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDHVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESLFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPY 737
+V+ID+ ++ LP YI+ + + M + +A +DI + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGISAIEDIE---ELQEEMIDRFGDYPQ 1074
Query: 738 SMEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1075 EVGYLLQIANIKVLA 1089
>gi|340794976|ref|YP_004760439.1| transcription-repair coupling factor [Corynebacterium variabile DSM
44702]
gi|340534886|gb|AEK37366.1| transcription-repair coupling factor [Corynebacterium variabile DSM
44702]
Length = 1231
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 262/708 (37%), Positives = 393/708 (55%), Gaps = 40/708 (5%)
Query: 148 KVDPYSLRSGDYVVHKKVGIGKFVGIKFDV--QKDSTVPIEYVFIEYADGMAKLPVKQAS 205
+VDP +L GD VVH + GIG+FV + + D EY+ +EYA P Q
Sbjct: 527 RVDPLALEPGDLVVHDQHGIGRFVKMTERTIGKGDDASRREYLVLEYAPSKRGGPGDQLY 586
Query: 206 ------RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLK 259
ML RY ++P LSK+ + W+ K K + A++++ +L++LY R
Sbjct: 587 VPMDQLDMLSRYV---GGEKP-ALSKMGGSD-WKTAKKKARGAVREIAAELVQLYAAR-- 639
Query: 260 QKRPPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGK 316
Q P + P N + FP+ T DQ A V+ D+ E+ PMDR+I GDVG+GK
Sbjct: 640 QAAPGFAFDPDNQWTRQMEEAFPFTETEDQYNAIEAVKDDM-EKPVPMDRVIVGDVGYGK 698
Query: 317 TEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKE 376
TEVA+RA F V +GKQ VL PT +LA+QH+ +R +P + LSRF S E +
Sbjct: 699 TEVAVRAAFKAVQSGKQVAVLVPTTLLAQQHYRTFVDRMQDFP-TTIRELSRFTSGRESK 757
Query: 377 EHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLT 436
E L + G ++I+VGTH LL + V + NLGL++VDEEQRFGV+ KE I S + VDVLT
Sbjct: 758 ETLAGMADGTVDIVVGTHRLLATGVQWKNLGLVIVDEEQRFGVEHKEHITSLRTHVDVLT 817
Query: 437 LSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVF 496
+SATPIPRTL +++TG R+ S I TPP +R P+ T++ A V +A++ EL R GQVF
Sbjct: 818 MSATPIPRTLEMSMTGIREMSTILTPPEDRHPVLTYVGAQDDRHVAAAVRRELLRDGQVF 877
Query: 497 YVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556
YV R+K +E+ +++ P + +AHGQ QLE T++ F +L+CT IVE+
Sbjct: 878 YVHNRVKSIEDAAAHIRELVPEARVVVAHGQMSEEQLETTVQGFWDREFDVLVCTTIVET 937
Query: 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAAL 616
GLDI NANT+IV++ GL+QL+QLRGRVGR+ + A+AY FYP +L++ + +RL +
Sbjct: 938 GLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERAYAYFFYPKGEMLTETSYDRLRTI 997
Query: 617 EECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL----SKVDEH 672
E +LG G +A KD+ +RG G + G +Q+G + VG DL+ ++ E++ + D
Sbjct: 998 AENNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVEAYRAMADGE 1057
Query: 673 CVISVP--YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRR 730
V K ++ID+ ++ +P YI +E + +AA+ D L E L
Sbjct: 1058 VVDGSDKEKKEIRIDLPVDAHIPVTYIASERLRLEAYRKFAEAADDD--TLAGVLEELVD 1115
Query: 731 QYGKEPYSMEILLKKLYVRRMAADIGITKIYASGKMVGMKT-NMN-------KKVFKMMI 782
+YG P +E L +R + D+ IT++ +G + N+ K++F +
Sbjct: 1116 RYGDFPEEVERLTVVSRLRMLCRDLDITEVIQTGTKISFSAVNLPDSGQVRLKRLFPAAV 1175
Query: 783 DSMTSEVHRNSLTFEGDQIKAELLLELPREQLLNWIFQCLAELYASLP 830
T + EG ++A + L + LL W L +L A +P
Sbjct: 1176 YRATPKTVLIPAPKEGSGMRA---VPLRDDDLLQWCANALTDL-AGVP 1219
>gi|322433996|ref|YP_004216208.1| transcription-repair coupling factor [Granulicella tundricola
MP5ACTX9]
gi|321161723|gb|ADW67428.1| transcription-repair coupling factor [Granulicella tundricola
MP5ACTX9]
Length = 1233
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 236/632 (37%), Positives = 381/632 (60%), Gaps = 10/632 (1%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
++ D L GDYVVH + GI ++ G++ +++D+ P+E + +E+AD AKL V
Sbjct: 526 AFISDFRDLAVGDYVVHVEHGIAQYCGLRV-LEEDTDNPLELMILEFAD-QAKLYVPLTR 583
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L + ET L+KL + AW++ K + K A+ M +L++LY R + +
Sbjct: 584 LDLIQKYRSTETGPAPVLNKLGNP-AWQKTKARVKKAMADMAGELIKLYAQRKAAQGTAF 642
Query: 266 -PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P N EF FP+ T DQ A D++RD+ E PMDRL+CGDVG+GKTEVA+RA
Sbjct: 643 SPDNNLQREFEDAFPFNETDDQLAAIADIKRDM-ESTQPMDRLLCGDVGYGKTEVAMRAA 701
Query: 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
F V KQ +L PT VL+ QHF+ +RF+ +P +KV +LSRF++ EK E ++ +
Sbjct: 702 FKAVQDSKQVAILTPTTVLSFQHFESFKKRFANFP-VKVEMLSRFRTAKEKAEIMEQTEQ 760
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G ++I++GTH++LG ++ + +LGLLVVDEEQRFGV+ KE++ + ++DVL +SATPIPR
Sbjct: 761 GKVDILIGTHAVLGQKLKFQDLGLLVVDEEQRFGVRHKERLKQMRAAIDVLAMSATPIPR 820
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL+++L G RD S+I TPP +R+ I+T ++ F ++ V +AI+ EL+RGGQ ++V R++
Sbjct: 821 TLHMSLVGLRDMSVIETPPKDRMAIQTIVAKFDEKLVRTAIEMELERGGQSYFVHNRVET 880
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+ E +++ P + + HGQ +LE M F +L+ T+I+E+GLDI AN
Sbjct: 881 IYEMASMIREQVPSARVIVGHGQMPEAELERVMLAFMNHEYDVLVATSIIENGLDIPLAN 940
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
TII+ + GL++LYQLRGRVGR+++ A+AYL P + L++ A RLAAL+E +LG
Sbjct: 941 TIIINRADRHGLSELYQLRGRVGRSNRRAYAYLLIPPDTELTEIARRRLAALKEFSDLGA 1000
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF++A D+ +RG G + G +Q+G + +G +++ ML E+++K+ P ++ +
Sbjct: 1001 GFKIAALDLELRGAGNMLGGEQSGHIEAIGFEMYTTMLEEAVNKLKGEQ--DKPSETTVL 1058
Query: 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
++ I+ R+ ++YI + M A +Q + L +YG P ++ LL
Sbjct: 1059 NLGISVRIDADYIPEENQRLRMYKRIAGALDQ--ATIDDVRSELHDRYGAPPETVLNLLA 1116
Query: 745 KLYVRRMAADIGITKIYASGKMVGMKTNMNKK 776
+R A +GI ++ + + N+K
Sbjct: 1117 AGELRLQAERLGIAQLDRKRTQIELPNPANRK 1148
>gi|238026956|ref|YP_002911187.1| transcription-repair coupling factor [Burkholderia glumae BGR1]
gi|237876150|gb|ACR28483.1| Transcription-repair coupling factor [Burkholderia glumae BGR1]
Length = 1157
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 255/662 (38%), Positives = 386/662 (58%), Gaps = 20/662 (3%)
Query: 150 DPYSLRSGDYVVHKKVGIGKFVG-IKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASR 206
D L+ GD VVH + GIG+++G + D+ + T E++ +EYA G +KL PV Q
Sbjct: 476 DLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGET---EFLHLEYA-GESKLYVPVSQL-H 530
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP 266
++ RY+ + P L +L + WER K K I+ +L+ LY R ++ +
Sbjct: 531 VISRYSGADPDSAP--LHQLG-SGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFA 587
Query: 267 KNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
P +FA F +E TPDQ A V D+T + PMDRL+CGDVGFGKTEVALRA F
Sbjct: 588 LEPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGK-PMDRLVCGDVGFGKTEVALRAAF 646
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
V GKQ +L+PT +LA+QH +RF+ +P ++V LSRF+S E + I G
Sbjct: 647 IAVMGGKQVALLSPTTLLAEQHTQTFIDRFADWP-VRVAELSRFKSTKEVNAAIRQINEG 705
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++I++GTH LL S V + LGL+++DEE RFGV+QKE + + + VDVLTL+ATPIPRT
Sbjct: 706 SVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRT 765
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L +AL G RD S+I+T P +RL IKT + + + A+ EL RGGQV+++ ++ +
Sbjct: 766 LGMALEGLRDFSVIATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETI 825
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
E L+ P IAIAHGQ + R+LE M +F +L+CT I+E+G+D+ +ANT
Sbjct: 826 ENRKTMLEALVPEARIAIAHGQMHERELERVMREFVAQRANVLLCTTIIETGIDVPSANT 885
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
II+ +FGLAQL+QLRGRVGR+ +A+AYL D L+ QA RL A+++ ELG G
Sbjct: 886 IIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSG 945
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML---FESLSKVDEHCVISVPYKSV 682
F LA D+ IRG G + G++Q+G++ +G L+ EML ++L E +++ +
Sbjct: 946 FYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQLYTEMLNDAVKALKNGREPDLLAPLAATT 1005
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
+I+++ LP++Y ++ + + + D +Q E L ++GK P L
Sbjct: 1006 EINLHAPAILPADYCGDVQERLSLYKRLANCEDGDAIDAIQ--EELIDRFGKLPPQAHAL 1063
Query: 743 LKKLYVRRMAADIGITKIYASGKMVGMKTNMNKKVFKMMIDSMTSEVHRNSLTFEGDQIK 802
++ +R A +GI+KI AS +G++ N + M I M + HR+ D+++
Sbjct: 1064 VETHRLRLAAKPLGISKIDASEAAIGLQFVPNPPIDPMRIIEMVQK-HRHVKLAGQDKLR 1122
Query: 803 AE 804
E
Sbjct: 1123 IE 1124
>gi|163786687|ref|ZP_02181135.1| transcription-repair coupling factor [Flavobacteriales bacterium
ALC-1]
gi|159878547|gb|EDP72603.1| transcription-repair coupling factor [Flavobacteriales bacterium
ALC-1]
Length = 1096
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 239/619 (38%), Positives = 367/619 (59%), Gaps = 21/619 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
+L GDYV H GIG+F G+ K DV+ I+ V+ E + L + ++ ++
Sbjct: 416 NLEVGDYVTHIDHGIGRFGGLQKIDVEGKKQEAIKLVYGER--DVLYLSIHSLHKIT-KF 472
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPA 270
N + +P + KL + AW+ K K K ++++ +L++LY R +K Y P +
Sbjct: 473 N--GKDGKPPKIYKLG-SKAWKTLKQKTKSRVKEIAFNLIKLYAKRKLKKGFQYAPDSYM 529
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
E A F YE TPDQ + D++ D+ E E PMDRL+CGDVGFGKTEVA+RA F V
Sbjct: 530 QHELEASFVYEDTPDQITSTADIKADM-ESERPMDRLVCGDVGFGKTEVAIRAAFKAVDN 588
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
GKQ VL PT +LA QH ER +P + V ++RF++ EK E L+ ++ G ++II
Sbjct: 589 GKQVAVLVPTTILAYQHSRTFKERLKDFP-VTVDYVNRFRTAKEKRETLEGLEKGRVDII 647
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L V + +LGLL+VDEEQ+FGV KEK+ + K +VDVLTL+ATPIPRTL +L
Sbjct: 648 IGTHQLANKNVKFKDLGLLIVDEEQKFGVAVKEKLKTIKENVDVLTLTATPIPRTLQFSL 707
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
RD S+I+T PP R PI++H+ F++E + A+ YE+ RGGQVF++ RI+ ++E
Sbjct: 708 MAARDLSVITTAPPNRYPIESHVIRFAEETIRDAVSYEIQRGGQVFFIHNRIENIKEVAG 767
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
+Q+ P I I HGQ ++LE M F G +L+ T IVESGLD+ NANTI + +
Sbjct: 768 MIQRLVPDAKIGIGHGQLDGKKLEHLMLSFMNGEFDVLVSTTIVESGLDVPNANTIFINN 827
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGL+ L+Q+RGRVGR++K+A Y P+ S ++ A +R+ ALE+ ELG GF +A
Sbjct: 828 ANNFGLSDLHQMRGRVGRSNKKAFCYFITPEYSAMTTDARKRITALEQFTELGSGFNIAM 887
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISV---------PYKS 681
KD+ IRG G + G +Q+G + ++G D + ++L E++ ++ E + K
Sbjct: 888 KDLEIRGAGDLLGGEQSGFINDIGFDTYQKILNEAIEELKESEFADLYKDDGKPKQYVKD 947
Query: 682 VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
+ ID + P +Y+N++ + + + ++D + + TE + R +G+ P +
Sbjct: 948 ITIDTDFELLFPDDYVNNITERLNLYTKLNAIKDEDALAIFE-TEIIDR-FGELPTQVSD 1005
Query: 742 LLKKLYVRRMAADIGITKI 760
LL + ++ +A IGI K+
Sbjct: 1006 LLDSVRLKWIATKIGIEKL 1024
>gi|423671084|ref|ZP_17646113.1| transcription-repair coupling factor [Bacillus cereus VDM034]
gi|423672693|ref|ZP_17647632.1| transcription-repair coupling factor [Bacillus cereus VDM062]
gi|401293915|gb|EJR99548.1| transcription-repair coupling factor [Bacillus cereus VDM034]
gi|401311425|gb|EJS16726.1| transcription-repair coupling factor [Bacillus cereus VDM062]
Length = 1176
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/615 (39%), Positives = 384/615 (62%), Gaps = 28/615 (4%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GD+VVH GIGKF+GI + + + V +Y+ I+Y G KL P++Q
Sbjct: 493 RIKSYSELKVGDHVVHVNHGIGKFLGI--ETLEINGVHKDYLNIKYQ-GNDKLYVPIEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ + KL W++ KTK + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-VYKLGGND-WKKVKTKVEKSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y P EF + FPY+ T DQ ++ ++++D+ ER PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 YTPDTAEQQEFESLFPYQETEDQLRSIEEIKKDM-ERGRPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + KQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ ++ E + +K
Sbjct: 665 AFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYP-INIGLLSRFRTRKQQNETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I++GTH +L V Y +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 DGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ + AI+ EL RGGQ++++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P + AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +LS+ A RL A++E ELG
Sbjct: 904 NTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSK---VD--EHCVISVP 678
GF++A +D+ IRG G + G +Q G + +VG DL+ +ML +++ + D E+ V
Sbjct: 964 SGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTV---- 1019
Query: 679 YKSVQIDININPRLPSEYINHLENPMEMVNEAEK-AAEQDIWCLMQFTESLRRQYGKEPY 737
+V+ID+ ++ LP YI+ + + M + +A +DI + E + ++G P
Sbjct: 1020 --NVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGISAIEDIE---ELQEEMIDRFGDYPQ 1074
Query: 738 SMEILLKKLYVRRMA 752
+ LL+ ++ +A
Sbjct: 1075 EVGYLLQIANIKVLA 1089
>gi|167646581|ref|YP_001684244.1| transcription-repair coupling factor [Caulobacter sp. K31]
gi|167349011|gb|ABZ71746.1| transcription-repair coupling factor [Caulobacter sp. K31]
Length = 1155
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 255/626 (40%), Positives = 371/626 (59%), Gaps = 27/626 (4%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVK 202
++ + +L GD VVH GIG++ G+K DVQ P + + + Y G AKL PV+
Sbjct: 475 NFLAEASALTPGDLVVHIDHGIGRYEGLKTLDVQG---APHDCLDLLYG-GEAKLYLPVE 530
Query: 203 QASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQK 261
+L RY E + L KL AW+ RK+K K ++ M L+++ R LK
Sbjct: 531 NID-LLTRYGTDAENVQ---LDKLG-GAAWQGRKSKAKERLRVMAEGLIQIAAARQLKSV 585
Query: 262 RPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
P + EF A+FPYE T DQ A DV DL + PMDRLICGDVGFGKTEVAL
Sbjct: 586 EETDPPHGVFDEFCARFPYEETDDQLSAIADVLEDLGSGK-PMDRLICGDVGFGKTEVAL 644
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F V +GKQ ++ PT +LA+QH+ +RF +P +KV LSR + E E +
Sbjct: 645 RAAFVVAMSGKQVAIVCPTTLLARQHYKTFKDRFQGWP-VKVTRLSRLVTGKEAAETREG 703
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+ +G L I+VGTH++L +V + +LGL++VDEEQ FGVK KEK+ + V +LTL+ATP
Sbjct: 704 LANGQLEIVVGTHAILSKQVSFKDLGLVIVDEEQHFGVKHKEKLKELRADVHMLTLTATP 763
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL +AL+G R+ S+I+TPP +RL ++T++S F + A+ E RGGQ +YV+PR
Sbjct: 764 IPRTLQMALSGIREMSIIATPPVDRLAVRTYISPFDPVTLREALLREKYRGGQAYYVVPR 823
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
IK LEE FL+ P V + HGQ QLE+ M F +G +L+ T IVESGLDI
Sbjct: 824 IKDLEEIEKFLRTQVPEVKYVVGHGQMAPTQLEDVMTAFYEGQYDVLLATTIVESGLDIP 883
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
+ANT+IV FGLAQLYQ+RGRVGR+ A+AYL P++ ++ A +RL L+
Sbjct: 884 SANTLIVHRADMFGLAQLYQIRGRVGRSKARAYAYLTTPNEKQITLSAEKRLKVLQSLDS 943
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDE----HCVISV 677
LG GFQLA D+ RG G + G++Q+G + +GV+L+ +ML ++++++ E +I
Sbjct: 944 LGAGFQLASHDLDQRGGGNLLGDEQSGHIKEIGVELYQQMLEDAVAELRERQGAEALIED 1003
Query: 678 PYKSVQIDININPRLPSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGK 734
S QI+ +P +Y+ L + + ++EAEKAA+++ L ++G
Sbjct: 1004 RGWSPQINTGAAVMIPDDYVPDLNVRLSLYRRLSEAEKAADRE-----ALAAELIDRFGP 1058
Query: 735 EPYSMEILLKKLYVRRMAADIGITKI 760
P + LLK + ++ + + + KI
Sbjct: 1059 LPPETDSLLKVVAIKGLCREANVAKI 1084
>gi|340618092|ref|YP_004736545.1| transcription-repair coupling factor [Zobellia galactanivorans]
gi|339732889|emb|CAZ96264.1| Transcription-repair coupling factor [Zobellia galactanivorans]
Length = 1134
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 243/629 (38%), Positives = 371/629 (58%), Gaps = 24/629 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYN 212
L GDYV H GIGKF G+ K DV+ I+ ++ E + + + ++N
Sbjct: 445 LEIGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLMYGERDILYVSI---HSLHKISKFN 501
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY-PKNPAI 271
+ T P+ + KL + AW++ K K K ++K+ DL+++Y R +K Y P +
Sbjct: 502 GKDGTV-PK-IYKLG-SAAWKKLKQKTKSRVKKIAFDLIKIYAKRRLEKGFQYAPDSYLQ 558
Query: 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG 331
E A F YE TPDQ KA D+++D+ E E PMDRLICGDVGFGKTEVA+RA F V G
Sbjct: 559 TELEASFIYEDTPDQSKATEDLKKDM-ESERPMDRLICGDVGFGKTEVAIRAAFKAVDNG 617
Query: 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391
KQ VL PT +LA QH SER + P + V L+RF++ E++E L ++ G ++II+
Sbjct: 618 KQVAVLVPTTILAFQHHRTFSERLKEMP-VSVDYLNRFRTAKERKETLAKLESGQVDIII 676
Query: 392 GTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451
GTH L+ V + +LGLL+VDEEQ+FGV K+K+ S K +VDVLTL+ATPIPRTL +L
Sbjct: 677 GTHQLVNKNVKFKDLGLLIVDEEQKFGVAVKDKLKSIKENVDVLTLTATPIPRTLQFSLM 736
Query: 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF 511
RD S+I T PP R PI++ + F +E + AI+YE++RGGQ+F++ RI+ ++E
Sbjct: 737 AARDLSVIKTAPPNRYPIESRVIRFGEEVIRDAIRYEIERGGQIFFIHNRIENIKEVAGM 796
Query: 512 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571
+Q+ P + I HGQ ++LE M F G +L+ T I+ESGLD+ NANTI + +
Sbjct: 797 IQRLVPDAKVGIGHGQMDGKKLENLMLSFMNGEFDVLVSTTIIESGLDVTNANTIFINNA 856
Query: 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEK 631
FGL+ L+Q+RGRVGR++K+A Y P ++ +A +R+ AL + ELG GF +A K
Sbjct: 857 NNFGLSDLHQMRGRVGRSNKKAFCYFITPPYESMTPEARKRIEALAQFTELGSGFNIAMK 916
Query: 632 DMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS-----------VPYK 680
D+ IRG G + G +Q+G + +G + + ++L E++ ++ E+ V K
Sbjct: 917 DLEIRGAGDLLGGEQSGFINEIGFETYQKILAEAIDELKENEFKDLYEEVEGHQQKVFVK 976
Query: 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740
Q+D + P +YIN++ + + + +++ L +F L ++G+ P E
Sbjct: 977 ETQLDSDFQLLFPDDYINNITERLTLYTDLNDIKDEE--NLQKFEAQLVDRFGELPTEAE 1034
Query: 741 ILLKKLYVRRMAADIGITK-IYASGKMVG 768
LL + ++ +A IGI K + GK++G
Sbjct: 1035 DLLNSVRIKWIANSIGIEKVVMKKGKLIG 1063
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,004,926,153
Number of Sequences: 23463169
Number of extensions: 568831446
Number of successful extensions: 2583979
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 11042
Number of HSP's successfully gapped in prelim test: 15760
Number of HSP's that attempted gapping in prelim test: 2504991
Number of HSP's gapped (non-prelim): 45930
length of query: 835
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 684
effective length of database: 8,816,256,848
effective search space: 6030319684032
effective search space used: 6030319684032
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)