BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003260
(835 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55750|MFD_SYNY3 Transcription-repair-coupling factor OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=mfd PE=3 SV=1
Length = 1199
Score = 557 bits (1435), Expect = e-157, Method: Compositional matrix adjust.
Identities = 301/648 (46%), Positives = 419/648 (64%), Gaps = 19/648 (2%)
Query: 146 SYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS 205
S +VD L GDYVVHK GIGKF+ + D+ EY+ I+YADG+ ++P
Sbjct: 519 SKQVDINKLSPGDYVVHKSHGIGKFLKL------DALANREYLMIQYADGILRVPADSLD 572
Query: 206 RMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPY 265
L R+ + RP L K+ WE K K + A++K+ VDL+ LY R KQ Y
Sbjct: 573 S-LSRFR--HTGTRPPELHKMGGKV-WEATKNKVRKAVKKLAVDLLNLYAKRAKQVGYAY 628
Query: 266 PKN-PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324
P + P E FPY+PTPDQ KA DV+RDL E + PMDRL+CGDVGFGKTEVA+RAI
Sbjct: 629 PPDSPWQQELEDSFPYQPTPDQLKAVQDVKRDL-EGDRPMDRLVCGDVGFGKTEVAVRAI 687
Query: 325 FCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V++G KQ +LAPT VL +QH+ + ERF+ YP I +GLL+RF++ +EK+E L +K
Sbjct: 688 FKAVTSGNKQVALLAPTTVLTQQHYHTLKERFAPYP-ITIGLLNRFRTASEKKEILAKLK 746
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G L+I+VGT +LG+ V + +LGLLV+DEEQRFGV QKEKI + K VDVLTL+ATPIP
Sbjct: 747 SGELDIVVGTQQVLGTSVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTEVDVLTLTATPIP 806
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTLY++L+G R+ SLI+TPPP R PIKTHLS ++ E + +AI+ ELDRGGQVFYV+PRI+
Sbjct: 807 RTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNPEVIRTAIRNELDRGGQVFYVVPRIE 866
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
G+EE L+Q P IAI HGQ +LE TM F G IL+CT I+E+GLDI
Sbjct: 867 GIEELGGQLRQMVPSARIAIGHGQMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRV 926
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NTIIV+D Q+FGLAQLYQLRGRVGR+ +AHA+L YP++ L+++A RL AL+E +LG
Sbjct: 927 NTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLG 986
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
G+QLA +DM IRG G + G +Q+G + +G + + EML +++ ++ + V + Q
Sbjct: 987 SGYQLATRDMEIRGVGNLLGAEQSGQMEAIGYEFYMEMLQDAIKEIQGQEIPKV--EDTQ 1044
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ + +PS+YI LE M D L + +YG P +E L
Sbjct: 1045 IDLPLTAFIPSDYIPDLEEKMAAYRRITSIESTD--ELPKIALDWGDRYGMLPSPVEELF 1102
Query: 744 KKLYVRRMAADIGITKIYASGKM-VGMKTNMNKKVFKMMIDSMTSEVH 790
K + ++ +A +G ++I GK + ++T M + +K++ +++ + +
Sbjct: 1103 KVVKLKHLAKSLGFSRIKVEGKQNLVLETPMEEPAWKLLAENLPNHLQ 1150
>sp|Q4L3G0|MFD_STAHJ Transcription-repair-coupling factor OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=mfd PE=3 SV=1
Length = 1169
Score = 453 bits (1166), Expect = e-126, Method: Compositional matrix adjust.
Identities = 251/628 (39%), Positives = 395/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDYVVH G+G+++G++ DV +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYVVHVHHGVGRYLGVETLEVGDVHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K P+ L+KL + W++ K K + +++ + +L+ LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPK-LNKLG-GSEWKKTKAKVQQSVEDIADELIALYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ERE PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGEDTAEQSAFEMDFPYELTPDQAKSIDEIKGDM-ERERPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF+S E +E
Sbjct: 657 AVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VQIELISRFRSTKEVKETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTMKTNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
R++ + E + LQ P +IA+AHGQ R LEETM F G IL+ T I+E+G+D
Sbjct: 836 NRVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINGEFDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY + +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHSANKVLTETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEEEPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
V++++N++ LP+EYI + + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PEVEMELNLDAYLPAEYIQNEQAKIEIYKKLRKVETEE--QLFDIKDELIDRFNDYPVEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL+ + ++ A G+T I GK +
Sbjct: 1074 ERLLEMVEIKIHALHAGVTLIKDKGKQI 1101
>sp|P37474|MFD_BACSU Transcription-repair-coupling factor OS=Bacillus subtilis (strain
168) GN=mfd PE=3 SV=1
Length = 1177
Score = 447 bits (1150), Expect = e-124, Method: Compositional matrix adjust.
Identities = 247/611 (40%), Positives = 383/611 (62%), Gaps = 20/611 (3%)
Query: 148 KVDPYS-LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
++ YS L+ GDYVVH GIGK++GI + + + + +Y+ I Y G KL PV+Q
Sbjct: 493 RIKSYSELQIGDYVVHINHGIGKYLGI--ETLEINGIHKDYLNIHY-QGSDKLYVPVEQI 549
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L KL + W+R K K + ++Q + DL++LY R K
Sbjct: 550 DQ-VQKY-VGSEGKEPK-LYKLG-GSEWKRVKKKVETSVQDIADDLIKLYAEREASKGYA 605
Query: 265 Y-PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
+ P + EF + FPY+ T DQ ++ ++++D+ ERE PMDRL+CGDVG+GKTEVA+RA
Sbjct: 606 FSPDHEMQREFESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRA 664
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F + GKQ +L PT +LA+QH++ + ERF YP I +GLLSRF+++ E E + +K
Sbjct: 665 AFKAIGDGKQVALLVPTTILAQQHYETIKERFQDYP-INIGLLSRFRTRKEANETIKGLK 723
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
+G ++I++GTH LL VVY +LGLL++DEEQRFGV KEKI K +VDVLTL+ATPIP
Sbjct: 724 NGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIP 783
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ ++ V AI+ EL RGGQV+++ R++
Sbjct: 784 RTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVE 843
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+E D + P +A AHG+ +LE M F +G +L+ T I+E+G+DI N
Sbjct: 844 DIERKADEISMLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNV 903
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+IV D + GL+QLYQLRGRVGR+++ A+AY Y +L++ A +RL A++E ELG
Sbjct: 904 NTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELG 963
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G QQ G + +VG DL+ +ML E++ + + +++ +
Sbjct: 964 SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFET-E 1022
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
ID+ ++ +P YI + ++M A I + + + ++G P +E L
Sbjct: 1023 IDVELDAYIPETYIQDGKQKIDMYKRFRSVA--TIEEKNELQDEMIDRFGNYPKEVEYLF 1080
Query: 744 K----KLYVRR 750
K+Y R+
Sbjct: 1081 TVAEMKVYARQ 1091
>sp|Q5HRQ2|MFD_STAEQ Transcription-repair-coupling factor OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=mfd PE=3 SV=1
Length = 1169
Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust.
Identities = 246/628 (39%), Positives = 392/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ+ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL A++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGVELIKDKGKSI 1101
>sp|Q49V12|MFD_STAS1 Transcription-repair-coupling factor OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=mfd PE=3 SV=1
Length = 1170
Score = 444 bits (1142), Expect = e-123, Method: Compositional matrix adjust.
Identities = 255/626 (40%), Positives = 396/626 (63%), Gaps = 19/626 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L+ GDYVVH G+G+++G+ + + V +Y+ ++Y G +L PV Q
Sbjct: 490 KIKSYQDLKVGDYVVHVHHGVGRYLGV--ETLEVGGVHKDYIKLQYK-GTDQLFVPVDQM 546
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL T W++ K K + +++ M +L+ELY + ++
Sbjct: 547 DQ-VQKY-VASEDKSPK-LNKLGGT-EWKKTKAKVQQSVEDMADELIELY--KAREMSVG 600
Query: 265 YPKNPAIAE---FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321
Y P AE F FPYE TPDQ K+ ++++D+ E E PMDRL+CGDVG+GKTEVA+
Sbjct: 601 YKFGPDTAEQNDFEIDFPYELTPDQSKSIEEIKQDM-EIERPMDRLLCGDVGYGKTEVAV 659
Query: 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381
RA F V GKQ L PT +LA+QH++ + ER +P I+V L+SRF++ E +E +
Sbjct: 660 RAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-IEVQLISRFRTTKEVKETKEG 718
Query: 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441
+K G ++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I S K +VDVLTL+ATP
Sbjct: 719 LKSGFVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKSLKNNVDVLTLTATP 778
Query: 442 IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR 501
IPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +
Sbjct: 779 IPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNK 838
Query: 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
++ + E + LQ P +I +AHGQ R LEETM F I++ T I+E+G+D+
Sbjct: 839 VQSIYEKREQLQMLMPDANIGVAHGQMNERDLEETMLSFINHEYDIIVTTTIIETGVDVP 898
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NANT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +LS+ A +RL A++E E
Sbjct: 899 NANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLSETAEDRLQAIKEFTE 958
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKS 681
LG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++
Sbjct: 959 LGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKAEKQDAPE 1018
Query: 682 VQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEI 741
++I++NI+ LP+EYI + ++ +E+ + K + LM + L ++ P +E
Sbjct: 1019 IEIELNIDAYLPAEYIPNEQSKIEIYKKLRKIESE--TQLMDVKDELIDRFNDYPIEVER 1076
Query: 742 LLKKLYVRRMAADIGITKIYASGKMV 767
LL+ + ++ A G+T I GK V
Sbjct: 1077 LLEMMEIKVHALHAGVTLIKDVGKQV 1102
>sp|Q8CMT1|MFD_STAES Transcription-repair-coupling factor OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=mfd PE=3 SV=1
Length = 1169
Score = 442 bits (1138), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/628 (39%), Positives = 391/628 (62%), Gaps = 23/628 (3%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKF----DVQKDSTVPIEYVFIEYADGMAKL--P 200
K+ Y L GDY+VH G+G+++G++ D +D Y+ ++Y G +L P
Sbjct: 489 KIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRD------YIKLQYK-GTDQLFVP 541
Query: 201 VKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQ 260
V Q + + +Y + +E K PR L+KL T W++ K K + +++ + +L++LY R
Sbjct: 542 VDQMDQ-VQKY-VASEDKSPR-LNKLG-GTEWKKTKAKVQQSVEDIADELIDLYKEREMS 597
Query: 261 KRPPYPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
Y ++ A + F FPYE TPDQ K+ +++ D+ ER PMDRL+CGDVG+GKTEV
Sbjct: 598 VGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDM-ERARPMDRLLCGDVGYGKTEV 656
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E E
Sbjct: 657 AVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFP-VEIQLVSRFRTAKEIRETK 715
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
+ +K G+++I+VGTH LLG + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+A
Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTA 775
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+
Sbjct: 776 TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLY 835
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+++ + E + LQ+ P +IA+AHGQ R LEETM F IL+ T I+E+G+D
Sbjct: 836 NKVQSIYEKREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVD 895
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NANT+I+++ +FGL+QLYQLRGRVGR+ + +AY +P +L++ A ERL ++E
Sbjct: 896 VPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQTIKEF 955
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPY 679
ELG GF++A +D+ IRG G + G+QQ G + +VG DL+ +ML E++++ S
Sbjct: 956 TELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDA 1015
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
++++++++ LP+EYI + +E+ + K ++ L + L ++ P +
Sbjct: 1016 PDIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEE--QLFDVKDELIDRFNDYPIEV 1073
Query: 740 EILLKKLYVRRMAADIGITKIYASGKMV 767
E LL + ++ A G+ I GK +
Sbjct: 1074 ERLLDIVEIKVHALHAGVELIKDKGKSI 1101
>sp|Q6GJG8|MFD_STAAR Transcription-repair-coupling factor OS=Staphylococcus aureus (strain
MRSA252) GN=mfd PE=3 SV=1
Length = 1168
Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 391/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQIHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>sp|Q7A7B2|MFD_STAAN Transcription-repair-coupling factor OS=Staphylococcus aureus (strain
N315) GN=mfd PE=1 SV=1
Length = 1168
Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>sp|Q99WA0|MFD_STAAM Transcription-repair-coupling factor OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=mfd PE=1 SV=1
Length = 1168
Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>sp|Q2YVY2|MFD_STAAB Transcription-repair-coupling factor OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=mfd PE=3 SV=1
Length = 1168
Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>sp|Q8NXZ6|MFD_STAAW Transcription-repair-coupling factor OS=Staphylococcus aureus (strain
MW2) GN=mfd PE=3 SV=1
Length = 1168
Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>sp|Q6GBY5|MFD_STAAS Transcription-repair-coupling factor OS=Staphylococcus aureus (strain
MSSA476) GN=mfd PE=3 SV=1
Length = 1168
Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>sp|Q2G0R8|MFD_STAA8 Transcription-repair-coupling factor OS=Staphylococcus aureus (strain
NCTC 8325) GN=mfd PE=3 SV=1
Length = 1168
Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>sp|Q2FJD8|MFD_STAA3 Transcription-repair-coupling factor OS=Staphylococcus aureus (strain
USA300) GN=mfd PE=3 SV=1
Length = 1168
Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>sp|Q5HIH2|MFD_STAAC Transcription-repair-coupling factor OS=Staphylococcus aureus (strain
COL) GN=mfd PE=3 SV=1
Length = 1168
Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/626 (38%), Positives = 390/626 (62%), Gaps = 15/626 (2%)
Query: 148 KVDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQA 204
K+ Y L GDY+VH G+G+++G+ + + +Y+ ++Y G +L PV Q
Sbjct: 488 KIKSYQDLNVGDYIVHVHHGVGRYLGV--ETLEVGQTHRDYIKLQYK-GTDQLFVPVDQM 544
Query: 205 SRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264
+ + +Y + +E K P+ L+KL + W++ K K + +++ + +L++LY R +
Sbjct: 545 DQ-VQKY-VASEDKTPK-LNKLGGS-EWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ 600
Query: 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323
Y ++ A F FPYE TPDQ K+ +++ D+ ++ PMDRL+CGDVG+GKTEVA+RA
Sbjct: 601 YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDM-QKSRPMDRLLCGDVGYGKTEVAVRA 659
Query: 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383
F V GKQ L PT +LA+QH++ + ER +P +++ L+SRF++ E ++ + +K
Sbjct: 660 AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP-VEIQLMSRFRTPKEIKQTKEGLK 718
Query: 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIP 443
G ++I+VGTH LL + Y +LGLL+VDEEQRFGV+ KE+I + K +VDVLTL+ATPIP
Sbjct: 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query: 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503
RTL++++ G RD S+I TPP R P++T++ + + A++ EL R GQVFY+ +++
Sbjct: 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query: 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563
+ E + LQ P +IA+AHGQ R LEETM F IL+ T I+E+G+D+ NA
Sbjct: 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query: 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELG 623
NT+I++D +FGL+QLYQLRGRVGR+ + +AY +P +L++ A +RL A++E ELG
Sbjct: 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query: 624 QGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQ 683
GF++A +D+ IRG G + G+QQ G + VG DL+ +ML E++++ V+
Sbjct: 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVE 1018
Query: 684 IDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743
+D+N++ LP+EYI + + +E+ + K D ++ + L ++ P + LL
Sbjct: 1019 VDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFD--QIIDIKDELIDRFNDYPVEVARLL 1076
Query: 744 KKLYVRRMAADIGITKIYASGKMVGM 769
+ ++ A GIT I GK++ +
Sbjct: 1077 DIVEIKVHALHSGITLIKDKGKIIDI 1102
>sp|O51568|MFD_BORBU Transcription-repair-coupling factor OS=Borrelia burgdorferi (strain
ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=mfd PE=3
SV=1
Length = 1125
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 239/615 (38%), Positives = 373/615 (60%), Gaps = 15/615 (2%)
Query: 149 VDPY-SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAK-LPVKQASR 206
+D + + +VVH GIG F IK K S++ +Y+ IEYA+G +P++Q +
Sbjct: 453 IDSFVEIEKNSHVVHINHGIGIFRQIK--RIKTSSLEKDYIEIEYAEGEKLFIPIEQ-TN 509
Query: 207 MLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYP 266
++ +Y + ++ K + L K+S T W + K K I+++ L+ELY R K YP
Sbjct: 510 LIQKY-IGSDPKNIK-LDKISSKT-WIKNKANAKKRIEEIADKLIELYSKRESIKGIKYP 566
Query: 267 KNPAIAE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
++ + F ++FPY+ TPDQ +A +++ D+ + MDRL+CGDVGFGKTEVA+RA F
Sbjct: 567 EDNELQLLFESEFPYDETPDQIRAIKEIKEDMMSFKV-MDRLLCGDVGFGKTEVAMRAAF 625
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
V KQ +VL+PT +LA+QHF+ +RF +P IK+ +LSRF + L +K G
Sbjct: 626 KAVMGNKQVIVLSPTTILAEQHFNTFKKRFKNFP-IKIEVLSRFIKNNAESRILKELKSG 684
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++II+GTH +L + NLGL+++DEEQRFGVK+KEK+ +ISVD L LSATPIPR+
Sbjct: 685 KIDIIIGTHKILSKKFTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRS 744
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L+++L RD S++ PP R+ I+ +L +FS+ + AI+ EL R GQVF V I+ L
Sbjct: 745 LHMSLIKLRDISVLKIPPQNRVKIEAYLESFSELLIKHAIESELSRDGQVFLVNHNIEEL 804
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
+++ P IAI HG+ ++E M F + A +IL+ T I+E+G+DI NANT
Sbjct: 805 YYLKTLIERLTPYARIAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANT 864
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
II+ + +FGLAQLYQL+GRVGR ++A+AY Y D L+++++ERL A+ E ELG G
Sbjct: 865 IIINNANKFGLAQLYQLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAG 924
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
F++A KDM IRG G + G +Q G++ ++G+D + ML +++ K + IS + V I
Sbjct: 925 FKIAMKDMEIRGVGNLLGREQHGEIESIGLDYYLTMLNKAIEK--KMGKISSDEEEVDIK 982
Query: 686 ININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKK 745
IN + +P Y + ++ + + + K ++ + L +G P + LL
Sbjct: 983 INYSGFIPENYAKNEQDKILIYKKIFKIQTEE--ESKKIRSELHNDFGPIPEEINSLLML 1040
Query: 746 LYVRRMAADIGITKI 760
++ +A D+ ITK+
Sbjct: 1041 AELKILAKDLNITKL 1055
>sp|O52236|MFD_MYXXA Transcription-repair-coupling factor OS=Myxococcus xanthus GN=mfd
PE=3 SV=1
Length = 1201
Score = 412 bits (1060), Expect = e-114, Method: Compositional matrix adjust.
Identities = 250/664 (37%), Positives = 387/664 (58%), Gaps = 42/664 (6%)
Query: 146 SYKVDPYS-----LRSGDYVVHKKVGIGKFVGI-KFDVQKDSTVPIEYVFIEYADGMAK- 198
S K+D + L+ GD +VH GIG++ G+ K +V + VP +++ +EYA G K
Sbjct: 519 SKKLDAFGSGFGDLKEGDLIVHTDFGIGRYAGLTKMEV---NGVPGDFLVLEYA-GRDKI 574
Query: 199 -LPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR 257
LPV + R++ +++ + T+ L KL TT+WE+ K + K + KM +L+++ R
Sbjct: 575 YLPVGRM-RLIQKFSGGDPTQV--QLDKLG-TTSWEKTKKRVKEQLLKMAAELLQIAAAR 630
Query: 258 LKQKRPPYPK-NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGK 316
+ + A+F A F +E TPDQ KA DV D+ + E PMDRL+CGDVG+GK
Sbjct: 631 KAHPGHAFSAPDRYFAQFEADFEFEETPDQAKAIEDVLADMQKPE-PMDRLVCGDVGYGK 689
Query: 317 TEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKE 376
TEVA+RA F KQ VL PT VLA+QHF +RF+ YP + V ++S + E
Sbjct: 690 TEVAMRAAFKAALDRKQVAVLVPTTVLAQQHFLSFKKRFADYP-VTVEVISGLKKAPEVR 748
Query: 377 EHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLT 436
E L K G ++I++GTH LLG V + LGL++VDEEQRFGVKQKE + ++ +DVLT
Sbjct: 749 EILKRAKEGKVDILIGTHKLLGGEVAFKELGLMIVDEEQRFGVKQKESLKKWRSQIDVLT 808
Query: 437 LSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVF 496
L+ATPIPRTL+++++G RD S+I+TPP +R I+T + + V AI+ E+ RGGQVF
Sbjct: 809 LTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIRTFVMKYEDTVVKEAIEREVARGGQVF 868
Query: 497 YVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556
+V R++ L L+ P V I +AHGQ QLE+ M F + ++L+CT+I+ES
Sbjct: 869 FVHNRVESLPSIETQLRALVPQVSIGVAHGQMGEGQLEKVMLAFTEKKYQVLLCTSIIES 928
Query: 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAAL 616
G+DI +ANT+IV QFGLAQLYQLRGRVGR+ + A+AYL P + ++ A RL L
Sbjct: 929 GIDISSANTMIVNRADQFGLAQLYQLRGRVGRSKERAYAYLLVPSRRAVTKDAQRRLEVL 988
Query: 617 EECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVIS 676
+ ELG GF +A D+ IRG G + G++Q+G + +G D++ ++L E+++++
Sbjct: 989 QNFTELGAGFSIASHDLEIRGAGNLLGDKQSGAIAEIGFDMYAQLLEEAVAEMQGQP--- 1045
Query: 677 VPYKSVQIDININ-PRL-PSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGK 734
P ++ D+ + P L P +Y++ + + +A+ D + L +YG+
Sbjct: 1046 -PKVQIEPDVTLPMPALIPDDYVSDVHQRLVFYKRFSQASHPD--EVTDLRAELVDRYGE 1102
Query: 735 EP----YSMEILLKKLYVRRM---AADIGITKIYAS--------GKMVGMKTNMNKKVFK 779
P + E+ L K+ +R + ++G T++ + G V +K V++
Sbjct: 1103 APDEVDHLSELTLLKIDMRDLRLRGLEVGTTRLVVTLGADALLDGPKVAGLVQRSKGVYR 1162
Query: 780 MMID 783
+ D
Sbjct: 1163 LTPD 1166
>sp|P64326|MFD_MYCTU Transcription-repair-coupling factor OS=Mycobacterium tuberculosis
GN=mfd PE=1 SV=1
Length = 1234
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 241/634 (38%), Positives = 360/634 (56%), Gaps = 30/634 (4%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKD-STVPIEYVFIEYADGMAKLPVKQASRM 207
VDP +L +GD VVH + GIG+FV + V++ EY+ +EYA K ++
Sbjct: 513 VDPLALTAGDLVVHDQHGIGRFVEM---VERTVGGARREYLVLEYASAKRGGGAKNTDKL 569
Query: 208 LYRYNLPNETKR-----PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
+ ++ R LS+L + W KTK + A++++ +L+ LY R Q
Sbjct: 570 YVPMDSLDQLSRYVGGQAPALSRLGGSD-WANTKTKARRAVREIAGELVSLYAKR--QAS 626
Query: 263 PPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
P + P P AE F + T DQ A +V+ D+ E+ PMDR+ICGDVG+GKTE+
Sbjct: 627 PGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEVKADM-EKPIPMDRVICGDVGYGKTEI 685
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ VL PT +LA QH ER S +P + + LSRF AE +
Sbjct: 686 AVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGFP-VTIKGLSRFTDAAESRAVI 744
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
D + G ++I++GTH LL + V + +LGL+VVDEEQRFGV+ KE I S + VDVLT+SA
Sbjct: 745 DGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSA 804
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL ++L G R+ S I TPP ER P+ T++ +++ +A++ EL R GQ FYV
Sbjct: 805 TPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVH 864
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
R+ ++ +++ P + +AHGQ LE T+++F IL+CT IVE+GLD
Sbjct: 865 NRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLD 924
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
I NANT+IV+ FGL+QL+QLRGRVGR+ + +AY YP + L++ A +RLA + +
Sbjct: 925 ISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQN 984
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL--------SKVDE 671
ELG G +A KD+ IRG G + G +Q+G V VG DL+ ++ E+L + D
Sbjct: 985 NELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADG 1044
Query: 672 HCVISVPY-KSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLR 729
V + K V+ID+ ++ LP +YI +E A ++++++ ++ + L
Sbjct: 1045 QTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVAAVV---DELT 1101
Query: 730 RQYGKEPYSMEILLKKLYVRRMAADIGITKIYAS 763
+YG P L +R + GIT + A+
Sbjct: 1102 DRYGALPEPARRLAAVARLRLLCRGSGITDVTAA 1135
>sp|P64327|MFD_MYCBO Transcription-repair-coupling factor OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=mfd PE=3 SV=1
Length = 1234
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 241/634 (38%), Positives = 360/634 (56%), Gaps = 30/634 (4%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKD-STVPIEYVFIEYADGMAKLPVKQASRM 207
VDP +L +GD VVH + GIG+FV + V++ EY+ +EYA K ++
Sbjct: 513 VDPLALTAGDLVVHDQHGIGRFVEM---VERTVGGARREYLVLEYASAKRGGGAKNTDKL 569
Query: 208 LYRYNLPNETKR-----PRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKR 262
+ ++ R LS+L + W KTK + A++++ +L+ LY R Q
Sbjct: 570 YVPMDSLDQLSRYVGGQAPALSRLGGSD-WANTKTKARRAVREIAGELVSLYAKR--QAS 626
Query: 263 PPY---PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319
P + P P AE F + T DQ A +V+ D+ E+ PMDR+ICGDVG+GKTE+
Sbjct: 627 PGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEVKADM-EKPIPMDRVICGDVGYGKTEI 685
Query: 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379
A+RA F V GKQ VL PT +LA QH ER S +P + + LSRF AE +
Sbjct: 686 AVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGFP-VTIKGLSRFTDAAESRAVI 744
Query: 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSA 439
D + G ++I++GTH LL + V + +LGL+VVDEEQRFGV+ KE I S + VDVLT+SA
Sbjct: 745 DGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSA 804
Query: 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVL 499
TPIPRTL ++L G R+ S I TPP ER P+ T++ +++ +A++ EL R GQ FYV
Sbjct: 805 TPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVH 864
Query: 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
R+ ++ +++ P + +AHGQ LE T+++F IL+CT IVE+GLD
Sbjct: 865 NRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLD 924
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
I NANT+IV+ FGL+QL+QLRGRVGR+ + +AY YP + L++ A +RLA + +
Sbjct: 925 ISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQN 984
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESL--------SKVDE 671
ELG G +A KD+ IRG G + G +Q+G V VG DL+ ++ E+L + D
Sbjct: 985 NELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADG 1044
Query: 672 HCVISVPY-KSVQIDININPRLPSEYINHLENPMEMVNE-AEKAAEQDIWCLMQFTESLR 729
V + K V+ID+ ++ LP +YI +E A ++++++ ++ + L
Sbjct: 1045 QTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVAAVV---DELT 1101
Query: 730 RQYGKEPYSMEILLKKLYVRRMAADIGITKIYAS 763
+YG P L +R + GIT + A+
Sbjct: 1102 DRYGALPEPARRLAAVARLRLLCRGSGITDVTAA 1135
>sp|P30958|MFD_ECOLI Transcription-repair-coupling factor OS=Escherichia coli (strain K12)
GN=mfd PE=1 SV=2
Length = 1148
Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust.
Identities = 230/623 (36%), Positives = 354/623 (56%), Gaps = 27/623 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQAS-RMLYRYN 212
L G VVH + G+G++ G+ + + EY+ + YA+ AKL V +S ++ RY
Sbjct: 477 LHIGQPVVHLEHGVGRYAGMT--TLEAGGITGEYLMLTYAND-AKLYVPVSSLHLISRYA 533
Query: 213 LPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-------LKQKRPPY 265
E P L KL AW R + K ++ + +L+++Y R K R Y
Sbjct: 534 GGAEENAP--LHKLGGD-AWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY 590
Query: 266 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
F FP+E TPDQ +A V D+ + MDRL+CGDVGFGKTEVA+RA F
Sbjct: 591 QL------FCDSFPFETTPDQAQAINAVLSDMCQ-PLAMDRLVCGDVGFGKTEVAMRAAF 643
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
V KQ VL PT +LA+QH+D +RF+ +P +++ ++SRF+S E+ + L + G
Sbjct: 644 LAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEG 702
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++I++GTH LL S V + +LGLL+VDEE RFGV+ KE+I + + +VD+LTL+ATPIPRT
Sbjct: 703 KIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRT 762
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L +A++G RD S+I+TPP RL +KT + + V AI E+ RGGQV+Y+ ++ +
Sbjct: 763 LNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENI 822
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
++ + L + P IAI HGQ R+LE M F +L+CT I+E+G+DI ANT
Sbjct: 823 QKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 882
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
II++ FGLAQL+QLRGRVGR+ +A+A+L P ++ A +RL A+ +LG G
Sbjct: 883 IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAG 942
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML---FESLSKVDEHCVISVPYKSV 682
F LA D+ IRG G + GE+Q+G + +G L+ E+L ++L E + + +
Sbjct: 943 FALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQT 1002
Query: 683 QIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEIL 742
++++ + LP ++I + + A ++ L + L ++G P L
Sbjct: 1003 EVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTEN--ELEEIKVELIDRFGLLPDPARTL 1060
Query: 743 LKKLYVRRMAADIGITKIYASGK 765
L +R+ A +GI K+ + K
Sbjct: 1061 LDIARLRQQAQKLGIRKLEGNEK 1083
>sp|Q89AK2|MFD_BUCBP Transcription-repair-coupling factor OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=mfd PE=3 SV=1
Length = 697
Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust.
Identities = 224/626 (35%), Positives = 350/626 (55%), Gaps = 23/626 (3%)
Query: 149 VDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DGMAKLPVKQASRM 207
D L+ +VH + G+G++ G+ ++ + E V I YA + +P+ +
Sbjct: 25 CDLSKLKINQPIVHFEHGVGRYQGLTTVTTRN--IKTECVVINYAQNSKLYVPITYLY-L 81
Query: 208 LYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPK 267
+ RY +K+ L +L + W + K K L+ +Y HR+ QK + K
Sbjct: 82 ISRY--IGTSKKDIPLHRLGND-LWNKEKKKANEKAYDSAAILLNIYSHRISQKGFSFKK 138
Query: 268 NPAIAE-FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
+ + F +FP+ TPDQ A V D+ + TPMDRL+CGDVGFGKTEVA+RA F
Sbjct: 139 HHTKYKIFCERFPFTLTPDQDSAINSVLSDMY-KSTPMDRLVCGDVGFGKTEVAMRATFL 197
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
V KQ +L PT +LA+QHF+ + RF KY K+ +LSRFQS+ + E ++ + G+
Sbjct: 198 AVCNQKQVAILVPTTLLAQQHFNNFTLRF-KYWSTKIEILSRFQSETKCNEIINNVNIGN 256
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
+++++GTH +L + + NLGLL+VDEE RFGV KE+I ++DVLTL+ATPIPRTL
Sbjct: 257 VHVLIGTHKILLKNLKWKNLGLLIVDEEHRFGVHHKEQIKLISNNIDVLTLTATPIPRTL 316
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
+A G RD S+I+TPP +RL +KT + FS + AI E+ RGGQV+Y+ + +E
Sbjct: 317 NMAFVGIRDLSIIATPPKQRLIVKTFVREFSYTVIRKAILREILRGGQVYYIYNNVNKIE 376
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
L++ P +I I HGQ S LE M F +L+C+ I+E+G+DI N NTI
Sbjct: 377 RKKIELKKLVPEANIRIGHGQLRSTDLESIMNDFYHKRFNVLVCSTIIETGIDIPNVNTI 436
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
I+++ FGLAQL+QLRGRVGR+ +A+A+L P + A +R+ A+ G F
Sbjct: 437 IIENANNFGLAQLHQLRGRVGRSQHQAYAWLLVPSLKDIKSDAKKRIDAITSIESFGSCF 496
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD-------EHCVISVPY 679
+LA +D+ IRG G I G Q+G + +G L+ ++L ++ + + + P
Sbjct: 497 ELANRDLEIRGIGEILGNNQSGHITKIGFSLYMKLLMNAVRNIKNGYYKPLNDIINTYP- 555
Query: 680 KSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739
+I++N++ LP YI + + + N+ A + L + +L + +G P S
Sbjct: 556 ---KIELNVSNLLPDSYIKKVNHRLFFYNKI--ATSNNFLDLEKIRLTLCKNFGNLPNSG 610
Query: 740 EILLKKLYVRRMAADIGITKIYASGK 765
+ L+K +R ++ IG+ KI + K
Sbjct: 611 DYLIKIAKIRLISKKIGVKKIKSDVK 636
>sp|P45128|MFD_HAEIN Transcription-repair-coupling factor OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=mfd PE=3
SV=1
Length = 1146
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 229/618 (37%), Positives = 357/618 (57%), Gaps = 23/618 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDST-VPIEYVFIEYADGMAKLPVKQAS-RMLYRY 211
L+ G VVH G+G++ G+ V D+ + EY+ + YA+ +KL V S ++ RY
Sbjct: 479 LKIGQPVVHLDHGVGRYGGL---VTLDTGGIKAEYLLLNYANE-SKLYVPVTSLHLISRY 534
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKN-PA 270
++ P L KL + AW + + K I+ + +L+++Y R +K + +
Sbjct: 535 VGGSDESAP--LHKLGNE-AWAKSRQKAAEKIRDVAAELLDVYAQREAKKGFAFKYDREE 591
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F+A FP+E T DQ+ A V D+ + + MDRL+CGDVGFGKTEVA+RA F V
Sbjct: 592 FQQFSATFPFEETYDQEMAINAVISDMCQPKA-MDRLVCGDVGFGKTEVAMRAAFLAVMN 650
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
KQ VL PT +LA+QH++ +RF+ P + V +LSRF++ E+++ L+ + G ++I+
Sbjct: 651 HKQVAVLVPTTLLAQQHYENFKDRFANLP-VNVEVLSRFKTAKEQKQILENLAEGKVDIL 709
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH L+ S V +N+LGLL++DEE RFGV QKEKI + ++D+LTL+ATPIPRTL +A+
Sbjct: 710 IGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAM 769
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMD 510
G RD S+ISTPP RL IKT + V AI E+ RGGQV+Y+ + +E +
Sbjct: 770 NGIRDLSIISTPPARRLSIKTFVRQNDDLVVREAILREILRGGQVYYLHNDVASIENTAE 829
Query: 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570
L P + + HGQ R+LE M F +L+C+ I+E+G+D+ ANTII++
Sbjct: 830 KLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIER 889
Query: 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAE 630
FGLAQL+QLRGRVGR+ +A+AYL P +++ A RL ALE LG GF LA
Sbjct: 890 ADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILAT 949
Query: 631 KDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML---FESLSKVDEHCVISVPYKSVQIDIN 687
D+ IRG G + G +Q+G + ++G L+ E+L ++L + E + + + I++
Sbjct: 950 HDLEIRGAGELLGNEQSGQIESIGFSLYMELLDAAVKALKEGREPSLEELTQQQADIELR 1009
Query: 688 INPRLPSEYINHLENPMEM---VNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLK 744
+ LP +Y+ + + + AE AE D + L ++G P + + LL+
Sbjct: 1010 VPALLPDDYLGDVNMRLSFYKRIAAAESKAELD-----ELKVELIDRFGLLPDATKNLLQ 1064
Query: 745 KLYVRRMAADIGITKIYA 762
+R + + + +I A
Sbjct: 1065 ITELRLLVEPLNVVRIDA 1082
>sp|P57381|MFD_BUCAI Transcription-repair-coupling factor OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=mfd PE=3 SV=1
Length = 812
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 218/612 (35%), Positives = 347/612 (56%), Gaps = 15/612 (2%)
Query: 160 VVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYR-YNLPNETK 218
V+H + GIG++ G+ + +++ EY+ I YA+G KL V ++ L Y +
Sbjct: 148 VMHIEHGIGRYKGL--TTIETASIQSEYLVISYAEG-DKLYVPVSNLHLVSPYTGTSIEN 204
Query: 219 RPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAE-FAAQ 277
P L KL W + K K + L+ +Y R + + KN + F
Sbjct: 205 AP--LHKLGGDD-WNKEKHKISKTVYDHAAQLLHIYAKRESKTGFAFKKNIEKYDLFCND 261
Query: 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337
++ T DQ + V +D++ + PMDRLICGDVGFGKTE+A+RA F VS KQ +L
Sbjct: 262 CSFKTTSDQNEVMKFVLKDMS-KPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAIL 320
Query: 338 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 397
PT +LA+QH+ RFS +P + + +LSRFQ++ E++ K+G +NII+GTH LL
Sbjct: 321 VPTTLLAQQHYKNFKIRFSNWP-VNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLL 379
Query: 398 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 457
+ + +LGLL++DEE RFGV KE I ++D+LTL+ATPIPRTL +A+TG +D S
Sbjct: 380 FKNIEWCSLGLLIIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDLS 439
Query: 458 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 517
+I+ PP +RL IKT + +S + I E+ RGGQV+Y+ +++ + + L P
Sbjct: 440 IIAKPPAQRLAIKTFIQEYSPILIRKTILREISRGGQVYYIYNKVQNIMNIAERLSILIP 499
Query: 518 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 577
I I HGQ + L++ M +F +LICT I+ESG+DI ANTII+++ FGL+
Sbjct: 500 EASIKIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLS 559
Query: 578 QLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRG 637
QL+QLRGR+GR++ +A+A L + + ++ A +RL A+ G GF L+ +D+ IRG
Sbjct: 560 QLHQLRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEIRG 619
Query: 638 FGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVP---YKSVQIDININPRLPS 694
G I G++Q+G + N+G L+ ++L ++ + + SV K ++ID++++ LPS
Sbjct: 620 VGEILGKEQSGHIKNIGFSLYMDLLKNAIDLLKNGKIFSVEKSLKKPLEIDLHVSSLLPS 679
Query: 695 EYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAAD 754
YI + + + A + + + L Q+GK P + L+ +R +A
Sbjct: 680 SYILDINTRLFFYKKLANAIHEK--QIEEIKYELIDQFGKLPDFSKNLILIAKIRLIADK 737
Query: 755 IGITKIYASGKM 766
IGI I ++ +
Sbjct: 738 IGIKYIKSNNNI 749
>sp|Q9AKD5|MFD_RICTY Transcription-repair-coupling factor OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=mfd PE=3 SV=1
Length = 1120
Score = 352 bits (904), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 213/553 (38%), Positives = 314/553 (56%), Gaps = 21/553 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLY 209
+L G++VVHK GIG+F+ ++ F++Q +++ I Y+ G KL PV+ ++
Sbjct: 455 NLAEGEFVVHKDHGIGQFLKLEAFEIQGKLH---DFLKILYS-GNDKLYVPVENI-EVIK 509
Query: 210 RYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKN 268
+Y N L KL + AW + K K K I+++ + L+++ R L P
Sbjct: 510 KYGSNN-----VELDKLG-SAAWHKSKAKLKDRIKEISLHLIQIAAKRKLNISTPIEFDL 563
Query: 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328
+F A FP+ T DQ A D+ +DLT MDRLICGDVGFGKTEVA+RA+F V
Sbjct: 564 EEYDKFCANFPFIETEDQLTAINDIRKDLT-NGMLMDRLICGDVGFGKTEVAMRAVFMVA 622
Query: 329 SAGK----QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384
+ Q V+ PT +L QHF ERF + + + LS S E +
Sbjct: 623 KSLNEYLPQVAVVVPTTILCSQHFSRFIERFKGF-GLNIKQLSSVVSSQEANIIRLELAS 681
Query: 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPR 444
G +NII+GTH+LL + + NL LL++DEEQ FGV QKE + S K S VL +SATPIPR
Sbjct: 682 GKINIIIGTHTLLHKNIKFFNLKLLIIDEEQHFGVSQKEFLKSLKYSSHVLAMSATPIPR 741
Query: 445 TLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504
TL ++LTG ++ S+I+TPP RL ++T + F + A+ E RGG+ FYV+PRIK
Sbjct: 742 TLQMSLTGLKELSIIATPPLNRLEVRTSVMPFDTVIIRDALLREHFRGGRSFYVVPRIKD 801
Query: 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564
+E+ L+Q P + IAHG+ +++E M +F G ILI T I+ESG+DI AN
Sbjct: 802 MEDIEKQLKQIVPELSYKIAHGKMTPSKIDEVMSEFYAGKFDILISTTIIESGIDITEAN 861
Query: 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQ 624
T+I+ + GL+QLYQLRGR+GR +AYL L +L RL ++ LG
Sbjct: 862 TMIIHNADTLGLSQLYQLRGRIGRGKIRGYAYLTVASNKKLMQHSLRRLEIIQNSCALGS 921
Query: 625 GFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQI 684
GF +A D +RGFG + GE+Q+G + VG +L+ EML E ++ + + ++S I
Sbjct: 922 GFTIASHDADLRGFGNLIGEEQSGQIREVGAELYQEMLEEQIALLKDESIVSEQSFIPNI 981
Query: 685 DININPRLPSEYI 697
++ ++ +P Y+
Sbjct: 982 NLGLSVFIPDHYV 994
>sp|Q92H58|MFD_RICCN Transcription-repair-coupling factor OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=mfd PE=3 SV=1
Length = 1122
Score = 352 bits (903), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 209/552 (37%), Positives = 315/552 (57%), Gaps = 19/552 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYR 210
+L G++VVHK GIG+F +K + + P +++ I YA G KL PV ++ ++ +
Sbjct: 457 NLAEGEFVVHKDHGIGQF--LKLEALEIKGKPHDFLKILYA-GNDKLYIPV-ESIEVIKK 512
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNP 269
Y N L KL + +W+R K K K I+++ + L+++ R L
Sbjct: 513 YGNDNAE-----LDKLG-SVSWQRSKAKLKKRIKEIALHLIQIAAKRKLNSSASVEFDLE 566
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
+F A FP+ T DQ A D++ DL MDRLICGDVGFGKTEVA+RA+F V
Sbjct: 567 EYDKFCANFPFSETEDQLIAINDIKEDL-RNGMLMDRLICGDVGFGKTEVAMRAVFMVAK 625
Query: 330 AGK----QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
+ Q V+ PT +L QHF ERF + + + LS S E + ++ G
Sbjct: 626 SLNEHLPQVAVVVPTTILCSQHFSRFIERFKGF-GLNIKQLSSVISSKEAKIIRSELESG 684
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
+NII+GTHSLL + + NL LL++DEEQ FGV QKE + S K S VL +SATPIPRT
Sbjct: 685 KINIIIGTHSLLHKNIKFFNLKLLIIDEEQHFGVGQKEFLKSLKSSSHVLAMSATPIPRT 744
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L +++TG ++ S+I+TPP RL + T + + + A+ E RGG+ FYV+PRIK +
Sbjct: 745 LQMSMTGLKELSIIATPPLNRLEVHTSVMPYDPVIIRDALLREHFRGGRSFYVVPRIKDI 804
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
E+ L+Q P + IA+G+ +++E M +F G IL+ T I+ESG+DI ANT
Sbjct: 805 EDIAKQLKQIVPELSYKIAYGKMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANT 864
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
+I+ + GL+QLYQLRGR+GR +AYL ++ +L RL ++ LG G
Sbjct: 865 MIIHNADMLGLSQLYQLRGRIGRGKMRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSG 924
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
F +A +DM +RGFG + GE+Q+G + VG +L+ EML E ++ + ++S I+
Sbjct: 925 FTIASRDMDLRGFGNLIGEEQSGQIKEVGTELYQEMLEEQIAIFKDESIVSEQPFIPTIN 984
Query: 686 ININPRLPSEYI 697
+ ++ +P Y+
Sbjct: 985 LGLSVFIPDNYV 996
>sp|Q4UMJ0|MFD_RICFE Transcription-repair-coupling factor OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=mfd PE=3 SV=1
Length = 1142
Score = 350 bits (898), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 210/553 (37%), Positives = 313/553 (56%), Gaps = 19/553 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYR 210
+L G++VVHK GIG+F +K + + +++ I YA G KL PV+ ++ +
Sbjct: 456 NLAEGEFVVHKDHGIGQF--LKLEALEIKGKLHDFLKILYA-GNDKLYIPVENI-EVIKK 511
Query: 211 YNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNP 269
Y N L KL +++W+R K K K I+++ + L+++ R L
Sbjct: 512 YGNDNAE-----LDKLG-SSSWQRSKAKLKNRIKEIALHLIQIAAKRKLNSSASVEFDLE 565
Query: 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329
+F A FP+ T DQ A D++ DL MDRLICGDVGFGKTEVA+RA+F V
Sbjct: 566 EYDKFCANFPFSETEDQLTAINDIKEDL-RNGMLMDRLICGDVGFGKTEVAMRAVFMVAK 624
Query: 330 AGK----QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
+ Q V+ PT +L QHF ERF + + + LS S E + ++ G
Sbjct: 625 SLNEHLPQVAVVVPTTILCSQHFSRFIERFKGF-GLNIKQLSSVISAKEAKIIRSELESG 683
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
+NII+GTHSLL + NL LL++DEEQ FGV QKE + S K S VL +SATPIPRT
Sbjct: 684 KINIIIGTHSLLHKNTKFFNLKLLIIDEEQHFGVGQKEFLKSLKSSSHVLAMSATPIPRT 743
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGL 505
L +++TG ++ S+I+TPP RL ++T + F + A+ E RGG+ FYV+PRIK +
Sbjct: 744 LQMSMTGLKELSIIATPPLNRLEVRTMVMPFDPVIIRDALLREHFRGGRSFYVVPRIKDI 803
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
E+ L+Q P + IAHG+ +++E M +F G IL+ T I+ESG+DI ANT
Sbjct: 804 EDIEKQLKQIVPELSYKIAHGKMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANT 863
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
+++ GL+QLYQLRGR+GR +AYL ++ +L RL ++ LG G
Sbjct: 864 MVIHKADMLGLSQLYQLRGRIGRGKVRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSG 923
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
F +A DM +RGFG + GE+Q+G + VG +L+ EML E ++ + ++S I+
Sbjct: 924 FTIASHDMDLRGFGNLIGEEQSGQIKEVGTELYQEMLEEQIAIFKDEPIVSEQLFIPTIN 983
Query: 686 ININPRLPSEYIN 698
+ ++ +P YI+
Sbjct: 984 LGLSVFIPDNYIS 996
>sp|O05955|MFD_RICPR Transcription-repair-coupling factor OS=Rickettsia prowazekii
(strain Madrid E) GN=mfd PE=3 SV=2
Length = 1120
Score = 349 bits (896), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 206/551 (37%), Positives = 310/551 (56%), Gaps = 17/551 (3%)
Query: 153 SLRSGDYVVHKKVGIGKFVGIK-FDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRY 211
+L+ G++VVHK GIG+F+ ++ F +Q ++ ++ + + +PV+ ++ +Y
Sbjct: 455 NLKEGEFVVHKDHGIGQFLKLEAFKIQGKLHDFLKILY--FGNDKLYVPVENI-EVIKKY 511
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPA 270
N L+KL + AW + K K K I+++ + L+++ R L P A
Sbjct: 512 GSDNAE-----LNKLG-SVAWNKSKAKLKNRIKEISLHLIQIAAKRKLNISTPIELDLEA 565
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F A FP+ T DQ A D+ DLT MDRLICGDVGFGKTEVA+RA+F V +
Sbjct: 566 YDKFCANFPFSETEDQLTAINDIREDLT-NGMLMDRLICGDVGFGKTEVAMRAVFMVAKS 624
Query: 331 GK----QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
Q V+ PT +L QHF ERF + + + LS S E + G
Sbjct: 625 LNEYLPQVAVVVPTTILCSQHFSRFIERFKGF-GLNIKQLSSVISSKEANIIRLELASGK 683
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
+NII+GTH+LL + NL LL++DEEQ FGV QKE + S K S VL +SATPIPRTL
Sbjct: 684 INIIIGTHALLHKNTKFFNLKLLIIDEEQHFGVSQKEFLKSLKSSTHVLAMSATPIPRTL 743
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
+++TG ++ S+I+TPP RL ++T + F + A+ E RGG+ FYV PRIK +E
Sbjct: 744 QMSMTGLKELSIIATPPLNRLEVRTSVMPFDPVIIRDALLREHFRGGRSFYVAPRIKDME 803
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
+ L+Q P + IAHG+ +++E M +F G ILI T I+ESG+DI ANT+
Sbjct: 804 DIEKQLKQIVPELSYKIAHGKMTPSKIDEVMSEFYVGKFDILISTTIIESGIDIAEANTM 863
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
I+ GL+QLYQLRGR+GR +AYL ++ +L RL ++ LG GF
Sbjct: 864 IIHKADTLGLSQLYQLRGRIGRGKIRGYAYLTVASNKKITSHSLRRLEIIQNSCSLGSGF 923
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 686
+A D +RGFG + GE+Q+G + VG +L+ EML E ++ + + ++ I++
Sbjct: 924 TIASHDADLRGFGNLIGEEQSGQIKEVGTELYQEMLEEQIALLKDDPIVLEQAFIPNINL 983
Query: 687 NINPRLPSEYI 697
++ +P Y+
Sbjct: 984 GLSVFIPDSYV 994
>sp|Q1RI82|MFD_RICBR Transcription-repair-coupling factor OS=Rickettsia bellii (strain
RML369-C) GN=mfd PE=3 SV=1
Length = 1120
Score = 348 bits (894), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 206/521 (39%), Positives = 300/521 (57%), Gaps = 19/521 (3%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKL--PVKQASRMLYRY 211
L G+ +VHK GIG+F +K + + +++ I YA G KL PV+ ++ +Y
Sbjct: 456 LAEGELIVHKDHGIGQF--LKLEALEIKGKLHDFLKILYA-GNDKLYIPVENI-EVIKKY 511
Query: 212 NLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR-LKQKRPPYPKNPA 270
L KL + +W++ K K K I+++ + LM++ R L
Sbjct: 512 G-----SDVAQLDKLG-SVSWQKNKAKLKNRIKEIALHLMQIAAKRKLNTTAAIEFDLEE 565
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+F A+FP+ T DQ A D+ DL+ MDRLICGDVGFGKTEVA+RA F V +
Sbjct: 566 YDKFCAKFPFTETEDQLNAINDIREDLSNG-MLMDRLICGDVGFGKTEVAMRAAFMVAKS 624
Query: 331 ----GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
Q V+ PT +L QHF +ERF K D+ + LS S E + ++ G
Sbjct: 625 LNENSPQVAVVVPTTILCSQHFARFTERF-KDSDLNIKQLSSVVSSKEAKIVRSELESGK 683
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
+NII+GTHSLL + NL LL++DEEQ FGV QKE + S K S VL +SATPIPRTL
Sbjct: 684 INIIIGTHSLLHKVTKFCNLKLLIIDEEQHFGVGQKEFLKSLKSSTHVLAMSATPIPRTL 743
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
+++TG ++ S+I+TPP RL ++T + F + A+ +E RGG+ F+V+PRI +E
Sbjct: 744 QMSMTGLKELSIIATPPLNRLEVRTSVMPFDPVIIRDALLHEHFRGGKSFFVVPRINDIE 803
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
+ L+Q P + +AHG+ +++E M +F G ILI T I+ESG+DIQ+ANT+
Sbjct: 804 DIEKQLKQIVPELSYKVAHGKMSPNKIDEIMSEFYAGKFDILISTTIIESGIDIQDANTM 863
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
I+ GL+QLYQLRGR+GR +AYL P ++ +L RL ++ LG GF
Sbjct: 864 IIHKADMLGLSQLYQLRGRIGRGKMRGYAYLTLPSHKKMTPHSLRRLEIIQNSCALGSGF 923
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLS 667
+A DM +RGFG + GE+Q+G + VG +L+ EML E ++
Sbjct: 924 TIASHDMDLRGFGNLIGEEQSGQIREVGTELYQEMLEEQIA 964
>sp|Q9ZJ57|MFD_HELPJ Transcription-repair-coupling factor OS=Helicobacter pylori (strain
J99) GN=mfd PE=3 SV=1
Length = 1001
Score = 337 bits (864), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 218/630 (34%), Positives = 352/630 (55%), Gaps = 26/630 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA---DGMAKLPVKQASRMLYR 210
L +G++VVH G+G F + + S + + F+E A + LPV+ ++ R
Sbjct: 361 LNAGEWVVHDDYGVGVFS----QLIQHSVLGSKRDFLEIAYLGEDKLLLPVENL-HLIAR 415
Query: 211 YNLPNETKRPRT-LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR---LKQKRPPYP 266
Y + +++ + L K ++ + K K + + ++ ++EL R L +K +
Sbjct: 416 YVVQSDSVPVKDRLGK----GSFLKLKAKVRAKLLEIAGKIIELAAERNLILGKKMDTHL 471
Query: 267 KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
I + A F Y T DQ+KA ++ RDL+ MDRL+ GDVGFGKTEVA+ AIFC
Sbjct: 472 AELEIFKSHAGFEY--TSDQEKAIAEISRDLSSHRV-MDRLLSGDVGFGKTEVAMHAIFC 528
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
G Q+ ++ PT +LA QHF+ + RF + +KV L R+ +EK + L ++ G
Sbjct: 529 AFLNGFQSALVVPTTLLAHQHFETLKARFENFG-VKVARLDRYIKTSEKSKLLKAVELGL 587
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
+++++GTH++LG++ + NLGL+VVDEE +FGVKQKE + SV L++SATPIPRTL
Sbjct: 588 VDVLIGTHAILGTK--FKNLGLMVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTL 645
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
+AL+ + S + TPP +R P +T L + E + I EL R GQ+FY+ I +
Sbjct: 646 NMALSQIKGISSLKTPPTDRKPSRTFLKEKNDELLKEIIYRELRRNGQIFYIHNHIASIS 705
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
+ L+ P + IAI H Q + + EE M +FA+G ++L+CT+IVESG+ + NANTI
Sbjct: 706 KVKTKLEDLIPKLKIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTI 765
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
I+ + Q FGLA L+QLRGRVGR KE Y D+ L++QAL+RL ALE+ LG G
Sbjct: 766 IIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGE 825
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 686
+A D+ IRG G + G+ Q+G + N+G L+ ML +++ ++ KSV+I +
Sbjct: 826 SIAYHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELSGGK--KRLEKSVEIQL 883
Query: 687 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
++ L E I +++ +++ + Q E + ++GK L+ +
Sbjct: 884 GVSAFLNPELIASDSLRLDLYRRLSLC--ENVDEVGQIHEEIEDRFGKMDDLSAQFLQII 941
Query: 747 YVRRMAADIGITKIYASGKMVGMKTNMNKK 776
++ +A +GI K+ + + + + KK
Sbjct: 942 TLKILANQLGILKLSNFNQNITLTYSDEKK 971
>sp|O26066|MFD_HELPY Transcription-repair-coupling factor OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=mfd PE=3 SV=1
Length = 999
Score = 328 bits (842), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 219/614 (35%), Positives = 342/614 (55%), Gaps = 28/614 (4%)
Query: 154 LRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA---DGMAKLPVKQASRMLYR 210
L G++VVH G+G F + VQ S + + F+E A + LPV+ ++ R
Sbjct: 361 LNPGEWVVHDDYGVGVFSQL---VQH-SVLGSKRDFLEIAYLGEDKLLLPVENL-HLIAR 415
Query: 211 YNLPNETKRPRT-LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHR---LKQKRPPYP 266
Y +++ + L K S + + K K + + ++ ++EL R L +K +
Sbjct: 416 YVAQSDSVPAKDRLGKGS----FLKLKAKVRTKLLEIASKIIELAAERNLILGKKMDVHL 471
Query: 267 KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326
+ + A F Y T DQ+KA ++ +DL+ MDRL+ GDVGFGKTEVA+ AIFC
Sbjct: 472 AELEVFKSHAGFEY--TSDQEKAIAEISKDLSSHRV-MDRLLSGDVGFGKTEVAMHAIFC 528
Query: 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386
G Q+ ++ PT +LA QHF+ + RF + +KV L R+ S EK + L ++ G
Sbjct: 529 AFLNGFQSALVVPTTLLAHQHFETLRARFENF-GVKVARLDRYAS--EKNKLLKAVELGQ 585
Query: 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446
++ ++GTH++LG++ + NLGL+VVDEE +FGVKQKE + SV L++SATPIPRTL
Sbjct: 586 VDALIGTHAILGAK--FKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTL 643
Query: 447 YLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506
+AL+ + S + TPP +R P +T L + E + I EL R GQ+FY+ I +
Sbjct: 644 NMALSQIKGISSLKTPPTDRKPSRTFLKEKNDELLKEIIYRELRRNGQIFYIHNHIASIL 703
Query: 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
+ L+ P + IAI H Q + + EE M +FA+G ++L+CT+IVESG+ + NANTI
Sbjct: 704 KVKTKLEDLIPKLKIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTI 763
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
I+ + Q FGLA L+QLRGRVGR KE Y D+ L++QAL+RL ALE+ LG G
Sbjct: 764 IIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGE 823
Query: 627 QLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDI 686
+A D+ IRG G + G+ Q+G + N+G L+ ML +++ ++ KSV+I +
Sbjct: 824 SVAYHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELSGGK--KRLEKSVEIQL 881
Query: 687 NINPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKL 746
++ L E I +++ D + Q E + ++GK L+ +
Sbjct: 882 GVSAFLNPELIASDSLRLDLYRRLSLCENTD--EVGQIHEEIEDRFGKIDDLSAQFLQII 939
Query: 747 YVRRMAADIGITKI 760
++ +A +GI K+
Sbjct: 940 TLKILANQLGIIKL 953
>sp|Q54900|RECG_STRPN ATP-dependent DNA helicase RecG OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=recG PE=3
SV=2
Length = 671
Score = 241 bits (614), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/382 (37%), Positives = 225/382 (58%), Gaps = 22/382 (5%)
Query: 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337
P+ T Q+K+ ++ D+ + + M+RL+ GDVG GKT VA A+F V+AG QA ++
Sbjct: 249 LPFALTQAQEKSLQEILTDM-KSDHHMNRLLQGDVGSGKTVVAGLAMFAAVTAGYQAALM 307
Query: 338 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 397
PT +LA+QHF+ + F P++K+ LL+ AEK E L+ I G ++I+GTH+L+
Sbjct: 308 VPTEILAEQHFESLQNLF---PNLKLALLTGSLKAAEKREVLETIAKGEADLIIGTHALI 364
Query: 398 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 457
V Y LGL+++DE+ RFGV Q+ + + DVL ++ATPIPRTL + G D S
Sbjct: 365 QDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLMMTATPIPRTLAITAFGDMDVS 424
Query: 458 LISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF----- 511
+I P R PI T + +V++ ++ E+ +G QV+ + P I+ E +D
Sbjct: 425 IIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQVYVISPLIEE-SEALDLKNAIA 483
Query: 512 ----LQQAFPG-VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566
L F G ++A+ HG+ S + ++ M+ F + IL+ T ++E G+++ NA +
Sbjct: 484 LSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATVM 543
Query: 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGF 626
I+ D +FGL+QL+QLRGRVGR DK+++A L K +D +R+ + E GF
Sbjct: 544 IIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVANPK---TDSGKDRMRIMTETT---NGF 597
Query: 627 QLAEKDMGIRGFGTIFGEQQTG 648
LAE+D+ +RG G IFG +Q+G
Sbjct: 598 VLAEEDLKMRGSGEIFGTRQSG 619
>sp|Q55681|RECG_SYNY3 ATP-dependent DNA helicase RecG OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=recG PE=3 SV=1
Length = 831
Score = 233 bits (594), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 135/393 (34%), Positives = 228/393 (58%), Gaps = 18/393 (4%)
Query: 266 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325
P + +F+ P+ T Q++ ++ +DL + +PM+RL+ GDVG GKT V + AI
Sbjct: 390 PHGELLEKFSDLLPFRLTQAQQRVVNEILQDLN-KPSPMNRLVQGDVGSGKTVVGVFAIL 448
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
+ G QA ++APT VLA+QH+ + F+ + V LL+ A++ E + G
Sbjct: 449 AALQGGYQAALMAPTEVLAEQHYQKLVSWFNLL-YLPVELLTGSTKTAKRREIHAQLSTG 507
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
L ++VGTH+L+ V + LGL+V+DE+ RFGV+Q+ K+ + + VL+++ATPIPRT
Sbjct: 508 QLPLLVGTHALIQETVNFQRLGLVVIDEQHRFGVQQRAKLLAKGNAPHVLSMTATPIPRT 567
Query: 446 LYLALTGFRDASLISTPPPERLPIKTH-LSAFSKEKVISAIKYELDRGGQVFYVLPRIK- 503
L L L G + S I PP R PI T ++A + ++ I+ E+ +G QV+ + P I+
Sbjct: 568 LALTLHGDLEVSQIDELPPGRQPIHTSVITAKERPQMYELIRREVAQGRQVYIIFPAIEE 627
Query: 504 --------GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555
+EE ++ FP +I + HG+ S + E + F + +I++ T ++E
Sbjct: 628 SEKLDIKAAVEEHKYLTEKIFPNFNIGLLHGRLKSAEKEAALTAFREKQTEIIVSTTVIE 687
Query: 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA 615
G+D+ NA +++++ ++FGL+QL+QLRGRVGR +++ L K S+ A +RL
Sbjct: 688 VGVDVPNATVMVIENAERFGLSQLHQLRGRVGRGSHQSYCLLVTNSK---SNDARQRLGV 744
Query: 616 LEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 648
+E+ ++ GF +AE D+ +RG G G +Q+G
Sbjct: 745 MEQSQD---GFFIAEMDLRLRGPGEFLGTKQSG 774
>sp|O51528|RECG_BORBU ATP-dependent DNA helicase RecG OS=Borrelia burgdorferi (strain
ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=recG PE=3
SV=1
Length = 686
Score = 232 bits (592), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 140/383 (36%), Positives = 226/383 (59%), Gaps = 16/383 (4%)
Query: 275 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQA 334
+ P+E T DQK + ++ DL + PM+RL+ GDVG GKT VAL + ++ AG Q
Sbjct: 256 VSSLPFELTEDQKISIDEIFFDLNSSK-PMNRLLQGDVGSGKTLVALLSGLPLIEAGYQV 314
Query: 335 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 394
+APT +LA+QH+D +S + + +I + LL+ K +KE+ L+ I++G +IVGTH
Sbjct: 315 AFMAPTDLLARQHYDNLSNILAPF-NISMTLLTGSLRKKDKEQALESIRNGTSGLIVGTH 373
Query: 395 SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 454
++ + L +++DE+ +FGV Q+E++ + VD+L +SATPIPR+ L L G
Sbjct: 374 AIFYESTEFKRLAYVIIDEQHKFGVVQREELKNKGEGVDMLLMSATPIPRSFALTLFGDL 433
Query: 455 DASLISTPPPERLPIKTHLSAFSKE-KVISAIKYELDRGGQVFYVLPRIKGLE--EPMDF 511
+ S I T P RLPI T+L+ E KV ++ EL +G QV++V P I E E D
Sbjct: 434 EVSFIKTLPKGRLPITTYLARHGNEDKVYEFLRKELLKGHQVYFVYPLISSSEKFELKDV 493
Query: 512 ------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
L++ F + + H + S EE M+ F + IL+ T+++E G+D NA
Sbjct: 494 NNMCLKLKEVFGEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATC 553
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
++V+ ++FGL+ L+Q+RGRVGR++ ++ +L Y K L+ RL ++E + G
Sbjct: 554 MVVEHAERFGLSTLHQIRGRVGRSNLQSFFFLLY--KEPLTSAGKFRLKTIKENLD---G 608
Query: 626 FQLAEKDMGIRGFGTIFGEQQTG 648
F++AE+D+ +RG G +FG +Q G
Sbjct: 609 FKIAEEDLRLRGPGNLFGLEQAG 631
>sp|O67837|RECG_AQUAE ATP-dependent DNA helicase RecG OS=Aquifex aeolicus (strain VF5)
GN=recG PE=3 SV=1
Length = 792
Score = 232 bits (591), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/427 (33%), Positives = 239/427 (55%), Gaps = 25/427 (5%)
Query: 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 336
+ P++ T Q++A ++ DL+ R+ PM+RL+ GDVG GKT VA+ VV +G Q V
Sbjct: 356 KLPFKLTRAQERAIKEILEDLS-RDVPMNRLLQGDVGSGKTIVAILTSLAVVKSGYQVAV 414
Query: 337 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL 396
+ PT +LA QH+ SE Y + V LL+ + ++K+ +K G+++++VGTH+L
Sbjct: 415 MVPTEILAHQHYKKFSEMLKDY-GVNVALLTGSLTPSQKKSVYKHVKEGNIHVLVGTHAL 473
Query: 397 LGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISV--DVLTLSATPIPRTLYLALTGFR 454
+ +V + NLG +++DE+ RFGV Q++ + + L +SATPIPRTL L++ G
Sbjct: 474 IQDKVEFKNLGYVIIDEQHRFGVMQRKLLLEKGKGLYPHCLVMSATPIPRTLALSIYGDL 533
Query: 455 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYE-LDRGGQVFYVLPRI--------KGL 505
D S+I PP R + T L S+++ + E L +G +V+ + P I K
Sbjct: 534 DISIIDELPPGRKEVITKLYFESQKEEVYKKVEEELKKGNKVYVIYPLIEESEKLNLKAA 593
Query: 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565
E + ++ FP + + HG+ ++ ME+F + IL+ T ++E G+D+ A
Sbjct: 594 TEEYERWKKLFPDRKVLLLHGKMPDKEKLAVMEEFKREG-DILVSTTVIEVGIDVPEATV 652
Query: 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQG 625
++++D +FGL+QL+QLRGRVGR+DKEA+ L PD+ + ++ E L L + G
Sbjct: 653 MVIEDAHRFGLSQLHQLRGRVGRSDKEAYCLLVVPDE--IKNEKNESLKRLRVFVKTTDG 710
Query: 626 FQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQID 685
F++AE+D+ +RG G I G Q+G +F +L++ + ++ V K +
Sbjct: 711 FKIAEEDLKLRGPGEIIGVSQSG---------YFGFRVANLARSQDRALLGVARKDAEEL 761
Query: 686 ININPRL 692
+ NP L
Sbjct: 762 LKNNPNL 768
>sp|P96130|RECG_TREPA ATP-dependent DNA helicase RecG OS=Treponema pallidum (strain
Nichols) GN=recG PE=3 SV=1
Length = 686
Score = 227 bits (579), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 134/391 (34%), Positives = 225/391 (57%), Gaps = 29/391 (7%)
Query: 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337
P+E T DQK+ ++ +DL ERE PM RLI GDVG GKT VA + ++ G Q +L
Sbjct: 267 LPFELTVDQKRVITEITQDL-EREEPMARLIQGDVGSGKTLVAFFSCLKIIEQGGQVALL 325
Query: 338 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 397
APT +LA+QH D + R I++ L+ + L+ + G +N++VGTH+L
Sbjct: 326 APTELLARQHADTAA-RLLAPIGIRLAFLTGNVKSEGRAYLLEALVAGEINLVVGTHALF 384
Query: 398 GSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVD-------VLTLSATPIPRTLYLAL 450
V Y++L L+++DE+ RFGV Q+ + + ++ +SATPIPRTL L++
Sbjct: 385 SKSVRYHDLRLVIIDEQHRFGVLQRSALIQKGREGNPQGKTPHIIMMSATPIPRTLALSV 444
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRI------- 502
G D S+I + P R P+ T+++ +K EKV + E+++G Q +++ PRI
Sbjct: 445 FGDLDISIIKSMPGGRKPVITYIARKTKAEKVYEFVGNEIEKGRQAYFIYPRIHDIGLTD 504
Query: 503 -KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561
K ++ +L+ F +A+ H + + + M+ F++G + IL+ T++VE G+D+
Sbjct: 505 LKSVQCMYMYLKNYFARYAVAMIHSKMTEEEQQRIMKYFSEGTVHILVATSVVEVGVDVP 564
Query: 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRE 621
NAN I+++ ++FGL+ L+QLRGRVGR D +++ +L + D+ +++ A RL + +
Sbjct: 565 NANCIVIEHAERFGLSALHQLRGRVGRGDVQSYCFLMHGDE--MTECAKRRLKIMGSTAD 622
Query: 622 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGN 652
GF +AE+D+ +RG G + GD N
Sbjct: 623 ---GFVIAEEDLKLRGPGDV------GDTKN 644
>sp|Q5HPW4|RECG_STAEQ ATP-dependent DNA helicase RecG OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=recG PE=3 SV=1
Length = 682
Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 226/388 (58%), Gaps = 19/388 (4%)
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+ +F P+E T QK + ++ RDL + M RL+ GDVG GKT VA ++ + +A
Sbjct: 250 VKQFIDSLPFELTDAQKVSVNEIFRDL-KAPIRMHRLLQGDVGSGKTIVAAICMYALKTA 308
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
G Q+ ++ PT +LA+QH + + + F + V LL+ ++ L+ +++G ++ +
Sbjct: 309 GYQSALMVPTEILAEQHAESLMQLFGN--TMNVALLTGSVKGKKRRLLLEQLENGTIDCL 366
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH+L+ VV+NN+GL++ DE+ RFGV Q++ + +VL ++ATPIPRTL +++
Sbjct: 367 IGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMTATPIPRTLAISV 426
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
G D S I P R PIKT + + ++V++ + EL +G Q + + P I+ E
Sbjct: 427 FGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYVICPLIESSEHLE 486
Query: 510 DF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
D LQ + + + HG+ + ++ M+KF++ I IL+ T +VE G+++
Sbjct: 487 DVQNVVELYESLQSDYGNEKVGLLHGKMTAEDKDQVMQKFSEHEIDILVSTTVVEVGVNV 546
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
NA +++ D +FGL+ L+QLRGRVGR++ +++ L K ++ +ER+ + +
Sbjct: 547 PNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK---TETGIERMTIMTQTT 603
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTG 648
+ GF+L+E+D+ +RG G FG +Q+G
Sbjct: 604 D---GFELSERDLEMRGPGDFFGVKQSG 628
>sp|Q8CSV3|RECG_STAES ATP-dependent DNA helicase RecG OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=recG PE=3 SV=1
Length = 682
Score = 224 bits (572), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 226/388 (58%), Gaps = 19/388 (4%)
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+ +F P+E T QK + ++ RDL + M RL+ GDVG GKT VA ++ + +A
Sbjct: 250 VKQFIDSLPFELTDAQKVSVNEIFRDL-KAPIRMHRLLQGDVGSGKTVVAAICMYALKTA 308
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
G Q+ ++ PT +LA+QH + + + F + V LL+ ++ L+ +++G ++ +
Sbjct: 309 GYQSALMVPTEILAEQHAESLIQLFGN--TMNVALLTGSVKGKKRRLLLEQLENGTIDCL 366
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH+L+ VV+NN+GL++ DE+ RFGV Q++ + +VL ++ATPIPRTL +++
Sbjct: 367 IGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMTATPIPRTLAISV 426
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
G D S I P R PIKT + + ++V++ + EL +G Q + + P I+ E
Sbjct: 427 FGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYVICPLIESSEHLE 486
Query: 510 DF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
D LQ + + + HG+ + ++ M+KF++ I IL+ T +VE G+++
Sbjct: 487 DVQNVVALYESLQSDYGNEKVGLLHGKMSAEDKDQVMQKFSKHEIDILVSTTVVEVGVNV 546
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
NA +++ D +FGL+ L+QLRGRVGR++ +++ L K ++ +ER+ + +
Sbjct: 547 PNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPK---TETGIERMTIMTQTT 603
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTG 648
+ GF+L+E+D+ +RG G FG +Q+G
Sbjct: 604 D---GFELSERDLEMRGPGDFFGVKQSG 628
>sp|Q5HGK6|RECG_STAAC ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain
COL) GN=recG PE=3 SV=1
Length = 686
Score = 223 bits (567), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 226/388 (58%), Gaps = 19/388 (4%)
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+ F + P+E T QK + ++ RDL + M RL+ GDVG GKT VA ++ + +A
Sbjct: 254 VKSFIDRLPFELTEAQKSSVNEIFRDL-KAPIRMHRLLQGDVGSGKTVVAAICMYALKTA 312
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
G Q+ ++ PT +LA+QH + + F + V LL+ +++ L+ +++G ++ +
Sbjct: 313 GYQSALMVPTEILAEQHAESLMALFGD--SMNVALLTGSVKGKKRKILLEQLENGTIDCL 370
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH+L+ V+++N+GL++ DE+ RFGV Q++ + +VL ++ATPIPRTL +++
Sbjct: 371 IGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISV 430
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
G D S I P R PI T + + +KV+ + EL +G Q + + P I+ E
Sbjct: 431 FGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLE 490
Query: 510 DF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
D LQQ + + + HG+ + + +E M+KF+ I +L+ T +VE G+++
Sbjct: 491 DVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEINVLVSTTVVEVGVNV 550
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
NA +++ D +FGL+ L+QLRGRVGR+D++++ L K ++ +ER+ + +
Sbjct: 551 PNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK---TETGIERMTIMTQTT 607
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTG 648
+ GF+L+E+D+ +RG G FG +Q+G
Sbjct: 608 D---GFELSERDLEMRGPGDFFGVKQSG 632
>sp|O50581|RECG_STAA8 ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain
NCTC 8325) GN=recG PE=3 SV=1
Length = 686
Score = 223 bits (567), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 226/388 (58%), Gaps = 19/388 (4%)
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+ F + P+E T QK + ++ RDL + M RL+ GDVG GKT VA ++ + +A
Sbjct: 254 VKSFIDRLPFELTEAQKSSVNEIFRDL-KAPIRMHRLLQGDVGSGKTVVAAICMYALKTA 312
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
G Q+ ++ PT +LA+QH + + F + V LL+ +++ L+ +++G ++ +
Sbjct: 313 GYQSALMVPTEILAEQHAESLMALFGD--SMNVALLTGSVKGKKRKILLEQLENGTIDCL 370
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH+L+ V+++N+GL++ DE+ RFGV Q++ + +VL ++ATPIPRTL +++
Sbjct: 371 IGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISV 430
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
G D S I P R PI T + + +KV+ + EL +G Q + + P I+ E
Sbjct: 431 FGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLE 490
Query: 510 DF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
D LQQ + + + HG+ + + +E M+KF+ I +L+ T +VE G+++
Sbjct: 491 DVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEINVLVSTTVVEVGVNV 550
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
NA +++ D +FGL+ L+QLRGRVGR+D++++ L K ++ +ER+ + +
Sbjct: 551 PNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK---TETGIERMTIMTQTT 607
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTG 648
+ GF+L+E+D+ +RG G FG +Q+G
Sbjct: 608 D---GFELSERDLEMRGPGDFFGVKQSG 632
>sp|Q8NX11|RECG_STAAW ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain
MW2) GN=recG PE=3 SV=1
Length = 686
Score = 222 bits (566), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 226/388 (58%), Gaps = 19/388 (4%)
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+ F + P+E T QK + ++ RDL + M RL+ GDVG GKT VA ++ + +A
Sbjct: 254 VKSFIDRLPFELTEAQKSSVNEIFRDL-KAPIRMHRLLQGDVGSGKTVVAAICMYALKTA 312
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
G Q+ ++ PT +LA+QH + + F + V LL+ +++ L+ +++G ++ +
Sbjct: 313 GYQSALMVPTEILAEQHAESLMALFGD--SMNVALLTGSVKGKKRKILLEQLENGTIDCL 370
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH+L+ V+++N+GL++ DE+ RFGV Q++ + +VL ++ATPIPRTL +++
Sbjct: 371 IGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISV 430
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
G D S I P R PI T + + +KV+ + EL +G Q + + P I+ E
Sbjct: 431 FGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLE 490
Query: 510 DF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
D LQQ + + + HG+ + + +E M+KF+ I +L+ T +VE G+++
Sbjct: 491 DVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNV 550
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
NA +++ D +FGL+ L+QLRGRVGR+D++++ L K ++ +ER+ + +
Sbjct: 551 PNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK---TETGIERMTIMTQTT 607
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTG 648
+ GF+L+E+D+ +RG G FG +Q+G
Sbjct: 608 D---GFELSERDLEMRGPGDFFGVKQSG 632
>sp|Q6G9Y6|RECG_STAAS ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain
MSSA476) GN=recG PE=3 SV=1
Length = 686
Score = 222 bits (566), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 226/388 (58%), Gaps = 19/388 (4%)
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+ F + P+E T QK + ++ RDL + M RL+ GDVG GKT VA ++ + +A
Sbjct: 254 VKSFIDRLPFELTEAQKSSVNEIFRDL-KAPIRMHRLLQGDVGSGKTVVAAICMYALKTA 312
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
G Q+ ++ PT +LA+QH + + F + V LL+ +++ L+ +++G ++ +
Sbjct: 313 GYQSALMVPTEILAEQHAESLMALFGD--SMNVALLTGSVKGKKRKILLEQLENGTIDCL 370
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH+L+ V+++N+GL++ DE+ RFGV Q++ + +VL ++ATPIPRTL +++
Sbjct: 371 IGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISV 430
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
G D S I P R PI T + + +KV+ + EL +G Q + + P I+ E
Sbjct: 431 FGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLE 490
Query: 510 DF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
D LQQ + + + HG+ + + +E M+KF+ I +L+ T +VE G+++
Sbjct: 491 DVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNV 550
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
NA +++ D +FGL+ L+QLRGRVGR+D++++ L K ++ +ER+ + +
Sbjct: 551 PNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK---TETGIERMTIMTQTT 607
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTG 648
+ GF+L+E+D+ +RG G FG +Q+G
Sbjct: 608 D---GFELSERDLEMRGPGDFFGVKQSG 632
>sp|P64325|RECG_STAAN ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain
N315) GN=recG PE=1 SV=1
Length = 686
Score = 222 bits (566), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 226/388 (58%), Gaps = 19/388 (4%)
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+ F + P+E T QK + ++ RDL + M RL+ GDVG GKT VA ++ + +A
Sbjct: 254 VKSFIDRLPFELTEAQKSSVNEIFRDL-KAPIRMHRLLQGDVGSGKTVVAAICMYALKTA 312
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
G Q+ ++ PT +LA+QH + + F + V LL+ +++ L+ +++G ++ +
Sbjct: 313 GYQSALMVPTEILAEQHAESLMALFGD--SMNVALLTGSVKGKKRKILLEQLENGTIDCL 370
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH+L+ V+++N+GL++ DE+ RFGV Q++ + +VL ++ATPIPRTL +++
Sbjct: 371 IGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISV 430
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
G D S I P R PI T + + +KV+ + EL +G Q + + P I+ E
Sbjct: 431 FGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLE 490
Query: 510 DF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
D LQQ + + + HG+ + + +E M+KF+ I +L+ T +VE G+++
Sbjct: 491 DVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNV 550
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
NA +++ D +FGL+ L+QLRGRVGR+D++++ L K ++ +ER+ + +
Sbjct: 551 PNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK---TETGIERMTIMTQTT 607
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTG 648
+ GF+L+E+D+ +RG G FG +Q+G
Sbjct: 608 D---GFELSERDLEMRGPGDFFGVKQSG 632
>sp|P64324|RECG_STAAM ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=recG PE=1 SV=1
Length = 686
Score = 222 bits (566), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 226/388 (58%), Gaps = 19/388 (4%)
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+ F + P+E T QK + ++ RDL + M RL+ GDVG GKT VA ++ + +A
Sbjct: 254 VKSFIDRLPFELTEAQKSSVNEIFRDL-KAPIRMHRLLQGDVGSGKTVVAAICMYALKTA 312
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
G Q+ ++ PT +LA+QH + + F + V LL+ +++ L+ +++G ++ +
Sbjct: 313 GYQSALMVPTEILAEQHAESLMALFGD--SMNVALLTGSVKGKKRKILLEQLENGTIDCL 370
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH+L+ V+++N+GL++ DE+ RFGV Q++ + +VL ++ATPIPRTL +++
Sbjct: 371 IGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISV 430
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
G D S I P R PI T + + +KV+ + EL +G Q + + P I+ E
Sbjct: 431 FGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLE 490
Query: 510 DF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
D LQQ + + + HG+ + + +E M+KF+ I +L+ T +VE G+++
Sbjct: 491 DVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNV 550
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
NA +++ D +FGL+ L+QLRGRVGR+D++++ L K ++ +ER+ + +
Sbjct: 551 PNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK---TETGIERMTIMTQTT 607
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTG 648
+ GF+L+E+D+ +RG G FG +Q+G
Sbjct: 608 D---GFELSERDLEMRGPGDFFGVKQSG 632
>sp|Q8XD86|RECG_ECO57 ATP-dependent DNA helicase RecG OS=Escherichia coli O157:H7 GN=recG
PE=3 SV=1
Length = 693
Score = 220 bits (560), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 159/487 (32%), Positives = 252/487 (51%), Gaps = 35/487 (7%)
Query: 180 DSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKG 239
D+ E + E + GM LP +A R L+R P TL +LSD + +
Sbjct: 175 DTCAIEELLPPELSQGMMTLP--EALRTLHRP--------PPTL-QLSDLETGQHPAQRR 223
Query: 240 KVAIQKMVVDLMELYLHRLKQK--RPPYPKNPAIA-EFAAQFPYEPTPDQKKAFLDVERD 296
+ + + +L L L Q+ P N A+ + A P++PT Q + ++ERD
Sbjct: 224 LILEELLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERD 283
Query: 297 LTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFS 356
+ + PM RL+ GDVG GKT VA A ++ GKQ ++APT +LA+QH + F
Sbjct: 284 MA-LDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFE 342
Query: 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQR 416
I+VG L+ Q + + I G + +IVGTH++ +V +N L L+++DE+ R
Sbjct: 343 PL-GIEVGWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHR 401
Query: 417 FGVKQK----EKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKT- 471
FGV Q+ EK L ++ATPIPRTL + D S+I PP R P+ T
Sbjct: 402 FGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTV 461
Query: 472 HLSAFSKEKVISAIKYE-LDRGGQVFYVLPRI--------KGLEEPMDFLQQAFPGVDIA 522
+ + +I +++ + G Q ++V I + E + L+ A P +++
Sbjct: 462 AIPDTRRTDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVG 521
Query: 523 IAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQL 582
+ HG+ + + M F QG + +L+ T ++E G+D+ NA+ +I+++ ++ GLAQL+QL
Sbjct: 522 LVHGRMKPAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQL 581
Query: 583 RGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIF 642
RGRVGR +H L Y K+ LS A RL L R+ GF +A+KD+ IRG G +
Sbjct: 582 RGRVGRGAVASHCVLLY--KTPLSKTAQIRLQVL---RDSNDGFVIAQKDLEIRGPGELL 636
Query: 643 GEQQTGD 649
G +QTG+
Sbjct: 637 GTRQTGN 643
>sp|Q6GHK8|RECG_STAAR ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain
MRSA252) GN=recG PE=3 SV=1
Length = 686
Score = 218 bits (556), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 126/388 (32%), Positives = 225/388 (57%), Gaps = 19/388 (4%)
Query: 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330
+ F + P+E T QK + ++ RDL + M RL+ GDVG GKT VA ++ + +A
Sbjct: 254 VKSFIDRLPFELTEAQKSSVNEIFRDL-KAPIRMHRLLQGDVGSGKTVVAAICMYALKTA 312
Query: 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390
G Q+ ++ PT +LA+QH + + F + V LL+ +++ L+ +++ ++ +
Sbjct: 313 GYQSALMVPTEILAEQHAESLIALFGD--SMNVALLTGSVKGKKRKILLEQLENRTIDCL 370
Query: 391 VGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450
+GTH+L+ V+++N+GL++ DE+ RFGV Q++ + +VL ++ATPIPRTL +++
Sbjct: 371 IGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISV 430
Query: 451 TGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509
G D S I P R PI T + + +KV+ + EL +G Q + + P I+ E
Sbjct: 431 FGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLE 490
Query: 510 DF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560
D LQQ + + + HG+ + + +E M+KF+ I +L+ T +VE G+++
Sbjct: 491 DVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNV 550
Query: 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620
NA +++ D +FGL+ L+QLRGRVGR+D++++ L K ++ +ER+ + +
Sbjct: 551 PNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPK---TETGIERMTIMTQTT 607
Query: 621 ELGQGFQLAEKDMGIRGFGTIFGEQQTG 648
+ GF+L+E+D+ +RG G FG +Q+G
Sbjct: 608 D---GFELSERDLEMRGPGDFFGVKQSG 632
>sp|P24230|RECG_ECOLI ATP-dependent DNA helicase RecG OS=Escherichia coli (strain K12)
GN=recG PE=1 SV=1
Length = 693
Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 157/487 (32%), Positives = 251/487 (51%), Gaps = 35/487 (7%)
Query: 180 DSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKG 239
D+ E + E + GM LP +A R L+R P TL +LSD + +
Sbjct: 175 DTCAIEELLPPELSQGMMTLP--EALRTLHR--------PPPTL-QLSDLETGQHPAQRR 223
Query: 240 KVAIQKMVVDLMELYLHRLKQK---RPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERD 296
+ + + +L L L Q+ +P + + A P++PT Q + ++ERD
Sbjct: 224 LILEELLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERD 283
Query: 297 LTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFS 356
+ + PM RL+ GDVG GKT VA A ++ GKQ ++APT +LA+QH + F+
Sbjct: 284 MA-LDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFA 342
Query: 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQR 416
I+VG L+ Q + + I G + +IVGTH++ +V +N L L+++DE+ R
Sbjct: 343 PL-GIEVGWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHR 401
Query: 417 FGVKQK----EKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKT- 471
FGV Q+ EK L ++ATPIPRTL + D S+I PP R P+ T
Sbjct: 402 FGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTV 461
Query: 472 HLSAFSKEKVISAIKYE-LDRGGQVFYVLPRI--------KGLEEPMDFLQQAFPGVDIA 522
+ + +I + + + G Q ++V I + E + L+ A P +++
Sbjct: 462 AIPDTRRTDIIDRVHHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVG 521
Query: 523 IAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQL 582
+ HG+ + + M F QG + +L+ T ++E G+D+ NA+ +I+++ ++ GLAQL+QL
Sbjct: 522 LVHGRMKPAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQL 581
Query: 583 RGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIF 642
RGRVGR +H L Y K+ LS A RL L R+ GF +A+KD+ IRG G +
Sbjct: 582 RGRVGRGAVASHCVLLY--KTPLSKTAQIRLQVL---RDSNDGFVIAQKDLEIRGPGELL 636
Query: 643 GEQQTGD 649
G +QTG+
Sbjct: 637 GTRQTGN 643
>sp|O34942|RECG_BACSU ATP-dependent DNA helicase RecG OS=Bacillus subtilis (strain 168)
GN=recG PE=3 SV=1
Length = 682
Score = 216 bits (550), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 130/393 (33%), Positives = 227/393 (57%), Gaps = 22/393 (5%)
Query: 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETP--MDRLICGDVGFGKTEVALRAIF 325
N + F P+ T Q + ++ D++ +P M+RL+ GDVG GKT VA A++
Sbjct: 243 NEELMRFIKSLPFPLTNAQSRVLREITADMS---SPYRMNRLLQGDVGSGKTAVAAIALY 299
Query: 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385
+ +G Q ++ PT +LA+QH D + F K+ D+ V LL+ ++E L+ + G
Sbjct: 300 AAILSGYQGALMVPTEILAEQHADSLVSLFEKW-DVSVALLTSSVKGKRRKELLERLAAG 358
Query: 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445
++I+VGTH+L+ V + L L++ DE+ RFGV+Q++K+ + DVL ++ATPIPRT
Sbjct: 359 EIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLRNKGQDPDVLFMTATPIPRT 418
Query: 446 LYLALTGFRDASLISTPPPERLPIKTHLSAFSK-EKVISAIKYELDRGGQVFYVLPRIK- 503
L + + G D S+I P R I+T+ +++++ ++ EL +G Q + + P I+
Sbjct: 419 LAITVFGEMDVSVIDEMPAGRKRIETYWVKHDMLDRILAFVEKELKQGRQAYIICPLIEE 478
Query: 504 ----GLEEPMD---FLQQAFPG-VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555
++ +D L F G ++ + HG+ +S + ++ M +F+ +IL+ T +VE
Sbjct: 479 SDKLDVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDEKDQVMREFSANHCQILVSTTVVE 538
Query: 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAA 615
G+++ NA +++ D +FGL+QL+QLRGRVGR + ++ L K S+ ER+
Sbjct: 539 VGVNVPNATIMVIYDADRFGLSQLHQLRGRVGRGEHQSFCILMADPK---SETGKERMRI 595
Query: 616 LEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 648
+ E + GF+L+EKD+ +RG G FG++Q+G
Sbjct: 596 MSETND---GFELSEKDLELRGPGDFFGKKQSG 625
>sp|P43809|RECG_HAEIN ATP-dependent DNA helicase RecG OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recG PE=3 SV=1
Length = 693
Score = 213 bits (543), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 133/389 (34%), Positives = 217/389 (55%), Gaps = 21/389 (5%)
Query: 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 333
F A P++PT QK+ D+E+DL ++ PM RL+ GDVG GKT VA A + GKQ
Sbjct: 261 FLATLPFQPTNAQKRVVSDIEQDLI-KDYPMMRLVQGDVGSGKTLVAALAALTAIDNGKQ 319
Query: 334 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 393
++APT +LA+QH + F + I+VG L+ ++ L+ IK G + ++VGT
Sbjct: 320 VALMAPTEILAEQHANNFRRWFKPF-GIEVGWLAGKVKGKSRQAELEKIKTGAVQMVVGT 378
Query: 394 HSLLGSRVVYNNLGLLVVDEEQRFGVKQK----EKIASFKISVDVLTLSATPIPRTLYLA 449
H+L V +++L L+++DE+ RFGV Q+ EK L ++ATPIPRTL +
Sbjct: 379 HALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAGFYPHQLIMTATPIPRTLAMT 438
Query: 450 LTGFRDASLISTPPPERLPIKTHLSAFSK--EKVISAIKYELDRGGQVFYVLPRI----- 502
+ D S+I PP R PI T + + + E V+ ++ Q ++V I
Sbjct: 439 VYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNACVNEKRQAYWVCTLIDESEV 498
Query: 503 ---KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559
+ E + L +A P ++I + HG+ ++ ++ M +F + +L+ T ++E G+D
Sbjct: 499 LEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVD 558
Query: 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619
+ NA+ +I+++ ++ GL+QL+QLRGRVGR + L Y K L + +RL L +
Sbjct: 559 VPNASLMIIENAERLGLSQLHQLRGRVGRGCTASFCVLMY--KPPLGKVSQKRLQVLRDS 616
Query: 620 RELGQGFQLAEKDMGIRGFGTIFGEQQTG 648
++ GF ++EKD+ IRG G + G +QTG
Sbjct: 617 QD---GFVISEKDLEIRGPGEVLGTKQTG 642
>sp|Q9CMB4|RECG_PASMU ATP-dependent DNA helicase RecG OS=Pasteurella multocida (strain
Pm70) GN=recG PE=3 SV=1
Length = 693
Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/390 (35%), Positives = 218/390 (55%), Gaps = 23/390 (5%)
Query: 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 333
F AQ P+ PT Q + ++E+DLT PM RL+ GDVG GKT VA A + GKQ
Sbjct: 261 FLAQLPFTPTDAQVRVTQEIEQDLTH-PFPMMRLVQGDVGSGKTLVAALAALLAIDNGKQ 319
Query: 334 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLS-RFQSKAEKEEHLDMIKHGHLNIIVG 392
++APT +LA+QH F I+VG L+ + + KA + E L+ I+ G + ++VG
Sbjct: 320 VALMAPTEILAEQHATNFRRWFESL-GIEVGWLAGKVKGKARQTE-LEKIRTGQVQMVVG 377
Query: 393 THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVD----VLTLSATPIPRTLYL 448
TH+L V +++L L++VDE+ RFGV Q+ + D L ++ATPIPRTL +
Sbjct: 378 THALFQDEVEFSDLALVIVDEQHRFGVHQRLMLREKGKQADHYPHQLIMTATPIPRTLAM 437
Query: 449 ALTGFRDASLISTPPPERLPIKT-HLSAFSKEKVISAIKYE-LDRGGQVFYVLPRIKGLE 506
+ D S+I PP R PI T +S + +VI+ + + ++ Q ++V I E
Sbjct: 438 TVYADLDTSIIDELPPGRTPITTVAISEERRAEVIARVNHACVNEKRQAYWVCTLIDESE 497
Query: 507 --------EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558
+ L++ P + I + HG+ + ++ M+ F Q I +L+ T ++E G+
Sbjct: 498 VLEAQAAEAIAEDLRKILPHLRIGLVHGRMKPAEKQDIMQAFKQAEIDLLVATTVIEVGV 557
Query: 559 DIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEE 618
D+ NA+ +I+++ ++ GL+QL+QLRGRVGR + L Y K L + +RL L +
Sbjct: 558 DVPNASLMIIENAERLGLSQLHQLRGRVGRGTTASFCVLMY--KPPLGKISQKRLQVLRD 615
Query: 619 CRELGQGFQLAEKDMGIRGFGTIFGEQQTG 648
++ GF ++EKD+ IRG G + G +QTG
Sbjct: 616 TQD---GFVISEKDLEIRGPGEVLGTKQTG 642
>sp|O69460|RECG_MYCLE ATP-dependent DNA helicase RecG OS=Mycobacterium leprae (strain TN)
GN=recG PE=3 SV=2
Length = 743
Score = 201 bits (512), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 148/463 (31%), Positives = 235/463 (50%), Gaps = 60/463 (12%)
Query: 233 ERRKTKGKVAIQKMVVDLMELYLHR---LKQKRPPYP--KNPAIAEFAAQFPYEPTPDQK 287
+RR+ + ++ + V L R L + P P + +AE + P+E T Q+
Sbjct: 234 DRRRARERLTFDEAVGLQWALVTRRHGELSESGPSAPPRSDGLMAELMRRLPFELTEGQR 293
Query: 288 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 347
+ DV D P++RL+ G+VG GKT VA+ A+ ++ AG Q ++LAPT VLA QH
Sbjct: 294 E-VRDVLSDGLAATRPLNRLLQGEVGSGKTIVAVLAMLQMIDAGYQCVLLAPTEVLAAQH 352
Query: 348 F----DVV------SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL 397
DV+ + +V LL+ + A+K++ I G I++GTH+LL
Sbjct: 353 LLSIRDVLGPLGMGCQLGGAENATQVALLTGSMTMAQKKKVRADIFSGQTGIVIGTHALL 412
Query: 398 GSRVVYNNLGLLVVDEEQRFGVKQKEKI---ASFKISVDVLTLSATPIPRTLYLALTGFR 454
+ ++NLG++VVDE+ RFGV+Q++++ A I +L ++ATPIPRT+ L + G
Sbjct: 413 QDAIEFHNLGMVVVDEQHRFGVEQRDQLRTKARTGIMPHLLVMTATPIPRTVALTVYGDL 472
Query: 455 DASLISTPPPERLPIKTHLSAFSKEK------VISAIKYELDRGGQVFYVLPRIKGLEEP 508
+ S + P R PI +++ F K+K I E+ G Q + V PRI E+P
Sbjct: 473 EMSTLRELPRGRQPITSNV-IFVKDKPGWLDRAWQRILEEVAAGRQAYVVAPRIDETEDP 531
Query: 509 MDFLQQAFP-----------------GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICT 551
Q + P V +A+ HG+ + + + M F G I +L+CT
Sbjct: 532 QKGGQNSRPSETADGLYARLRSGELANVRLALMHGRLSADEKDAAMMAFRAGEIDVLVCT 591
Query: 552 NIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQ--- 608
N++E G+D+ NA ++V D +FG++QL+QLRGR+GR +P LL+
Sbjct: 592 NVIEVGVDVPNATIMLVMDADRFGISQLHQLRGRIGRGT--------HPSLCLLASWVSP 643
Query: 609 ---ALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 648
A RL A+ E + GF LA+ D+ R G + G Q+G
Sbjct: 644 GSPAGRRLCAVAETMD---GFALADLDLKERREGDVLGRNQSG 683
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 312,148,056
Number of Sequences: 539616
Number of extensions: 13875711
Number of successful extensions: 64644
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 594
Number of HSP's that attempted gapping in prelim test: 60776
Number of HSP's gapped (non-prelim): 3782
length of query: 835
length of database: 191,569,459
effective HSP length: 126
effective length of query: 709
effective length of database: 123,577,843
effective search space: 87616690687
effective search space used: 87616690687
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)