Query 003260
Match_columns 835
No_of_seqs 696 out of 4373
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 20:06:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1197 Mfd Transcription-repa 100.0 6E-138 1E-142 1229.4 64.8 697 106-828 436-1136(1139)
2 PRK10689 transcription-repair 100.0 4E-109 8E-114 1022.6 69.1 693 106-827 441-1144(1147)
3 TIGR00580 mfd transcription-re 100.0 3E-109 7E-114 1004.3 62.5 630 106-761 295-926 (926)
4 COG1200 RecG RecG-like helicas 100.0 1.3E-70 2.7E-75 625.6 42.9 425 220-651 196-635 (677)
5 PRK10917 ATP-dependent DNA hel 100.0 4.1E-60 8.9E-65 567.1 49.5 425 220-651 195-633 (681)
6 TIGR00643 recG ATP-dependent D 100.0 1.6E-59 3.4E-64 558.4 49.6 424 221-651 169-610 (630)
7 KOG0333 U5 snRNP-like RNA heli 100.0 5E-53 1.1E-57 461.9 30.8 472 103-619 96-639 (673)
8 KOG0331 ATP-dependent RNA heli 100.0 8.8E-47 1.9E-51 425.2 30.8 339 265-620 96-464 (519)
9 PRK11776 ATP-dependent RNA hel 100.0 3.1E-46 6.7E-51 430.5 35.8 325 265-603 9-350 (460)
10 PRK04837 ATP-dependent RNA hel 100.0 1.2E-44 2.6E-49 413.1 33.4 323 265-602 13-362 (423)
11 KOG0330 ATP-dependent RNA heli 100.0 7.4E-45 1.6E-49 386.9 29.3 322 265-602 66-407 (476)
12 COG0513 SrmB Superfamily II DN 100.0 2.3E-44 5E-49 418.3 35.0 321 266-601 35-379 (513)
13 PTZ00110 helicase; Provisional 100.0 5.2E-44 1.1E-48 418.7 36.1 319 270-603 141-485 (545)
14 PRK10590 ATP-dependent RNA hel 100.0 6.1E-44 1.3E-48 410.8 34.9 323 266-603 7-353 (456)
15 PLN00206 DEAD-box ATP-dependen 100.0 4.2E-43 9.1E-48 409.4 35.7 320 270-603 132-476 (518)
16 PRK11634 ATP-dependent RNA hel 100.0 3.5E-43 7.6E-48 416.1 35.4 323 266-602 12-352 (629)
17 PRK04537 ATP-dependent RNA hel 100.0 4.1E-43 8.8E-48 412.8 35.2 324 265-603 14-365 (572)
18 PRK11192 ATP-dependent RNA hel 100.0 1.1E-42 2.4E-47 398.1 35.9 324 265-603 6-353 (434)
19 PRK01297 ATP-dependent RNA hel 100.0 2.4E-42 5.1E-47 399.8 35.3 324 265-602 92-442 (475)
20 KOG0345 ATP-dependent RNA heli 100.0 4.8E-42 1E-46 372.5 29.7 327 265-602 11-364 (567)
21 PTZ00424 helicase 45; Provisio 100.0 1.2E-41 2.6E-46 385.0 34.4 322 267-603 35-375 (401)
22 KOG0338 ATP-dependent RNA heli 100.0 1.1E-42 2.5E-47 379.3 22.6 318 269-602 191-533 (691)
23 TIGR00614 recQ_fam ATP-depende 100.0 2E-41 4.3E-46 391.3 32.8 310 274-603 3-334 (470)
24 TIGR03817 DECH_helic helicase/ 100.0 1.8E-40 3.9E-45 399.9 35.9 317 270-602 25-386 (742)
25 KOG0328 Predicted ATP-dependen 100.0 2.3E-41 4.9E-46 347.0 22.6 319 270-603 38-374 (400)
26 PLN03137 ATP-dependent DNA hel 100.0 3.1E-40 6.7E-45 396.9 32.9 320 264-603 441-788 (1195)
27 KOG0340 ATP-dependent RNA heli 100.0 3.8E-40 8.2E-45 347.5 27.8 334 265-619 12-372 (442)
28 PRK11057 ATP-dependent DNA hel 100.0 1.2E-39 2.5E-44 386.8 34.3 318 265-603 7-344 (607)
29 KOG0343 RNA Helicase [RNA proc 100.0 8.5E-40 1.8E-44 359.5 28.4 346 244-603 50-423 (758)
30 TIGR01389 recQ ATP-dependent D 100.0 5.3E-39 1.2E-43 381.1 34.2 311 272-603 3-332 (591)
31 KOG0342 ATP-dependent RNA heli 100.0 6.5E-40 1.4E-44 358.4 24.0 324 265-603 87-438 (543)
32 PRK02362 ski2-like helicase; P 100.0 1.4E-39 3E-44 394.7 27.7 411 266-702 7-515 (737)
33 KOG0336 ATP-dependent RNA heli 100.0 9.3E-40 2E-44 348.3 22.6 333 269-619 230-587 (629)
34 PRK11664 ATP-dependent RNA hel 100.0 9.9E-40 2.1E-44 394.6 24.3 388 289-702 9-431 (812)
35 PRK05580 primosome assembly pr 100.0 7.9E-38 1.7E-42 374.1 40.1 315 276-600 139-547 (679)
36 KOG0335 ATP-dependent RNA heli 100.0 2.4E-39 5.2E-44 359.5 25.0 334 270-620 85-460 (482)
37 TIGR01970 DEAH_box_HrpB ATP-de 100.0 3.1E-39 6.8E-44 389.6 26.3 385 291-701 8-427 (819)
38 PRK13767 ATP-dependent helicas 100.0 1.6E-37 3.6E-42 380.9 35.8 316 270-598 22-396 (876)
39 PRK01172 ski2-like helicase; P 100.0 4.3E-38 9.3E-43 378.7 29.1 407 266-703 7-494 (674)
40 KOG0344 ATP-dependent RNA heli 100.0 7E-38 1.5E-42 349.6 27.4 451 56-644 50-530 (593)
41 KOG0348 ATP-dependent RNA heli 100.0 5.5E-38 1.2E-42 344.5 25.1 327 265-603 141-555 (708)
42 KOG0339 ATP-dependent RNA heli 100.0 7.8E-38 1.7E-42 341.0 25.7 333 270-619 234-590 (731)
43 KOG0326 ATP-dependent RNA heli 100.0 6.4E-39 1.4E-43 333.5 15.5 319 271-604 97-431 (459)
44 KOG0341 DEAD-box protein abstr 100.0 9.3E-39 2E-43 338.6 15.1 321 269-603 180-529 (610)
45 PRK00254 ski2-like helicase; P 100.0 3.6E-37 7.8E-42 372.7 27.1 317 267-603 8-389 (720)
46 TIGR00595 priA primosomal prot 100.0 8.4E-37 1.8E-41 353.7 29.0 287 307-599 1-378 (505)
47 KOG0332 ATP-dependent RNA heli 100.0 9.3E-37 2E-41 323.4 24.5 321 268-603 99-444 (477)
48 KOG0347 RNA helicase [RNA proc 100.0 2.6E-37 5.7E-42 340.0 18.8 312 268-603 190-571 (731)
49 PHA02653 RNA helicase NPH-II; 100.0 4.7E-35 1E-39 346.2 35.1 309 281-603 160-515 (675)
50 KOG0350 DEAD-box ATP-dependent 100.0 5.7E-36 1.2E-40 327.0 24.5 329 272-604 150-542 (620)
51 KOG0346 RNA helicase [RNA proc 100.0 1.6E-35 3.6E-40 319.1 24.7 327 264-604 23-412 (569)
52 COG1201 Lhr Lhr-like helicases 100.0 7.3E-35 1.6E-39 344.9 30.8 317 270-601 12-361 (814)
53 COG0514 RecQ Superfamily II DN 100.0 1.8E-34 3.8E-39 331.1 28.4 313 272-604 7-339 (590)
54 KOG4284 DEAD box protein [Tran 100.0 5.3E-35 1.2E-39 325.6 20.8 317 272-603 38-380 (980)
55 COG1198 PriA Primosomal protei 100.0 1.3E-33 2.8E-38 332.4 32.8 311 279-598 196-599 (730)
56 KOG0334 RNA helicase [RNA proc 100.0 1.5E-34 3.3E-39 340.3 23.7 330 270-616 376-732 (997)
57 KOG0923 mRNA splicing factor A 100.0 9.7E-35 2.1E-39 324.9 20.3 377 303-703 280-700 (902)
58 COG1204 Superfamily II helicas 100.0 5.3E-34 1.2E-38 341.3 25.6 309 278-602 28-408 (766)
59 KOG0922 DEAH-box RNA helicase 100.0 1.9E-34 4.2E-39 326.6 20.1 378 303-702 66-483 (674)
60 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.4E-33 5.2E-38 333.7 29.4 302 272-592 6-380 (844)
61 PHA02558 uvsW UvsW helicase; P 100.0 3.8E-33 8.3E-38 324.5 30.6 303 279-603 112-456 (501)
62 COG1111 MPH1 ERCC4-like helica 100.0 7.1E-33 1.5E-37 305.5 29.2 309 280-604 14-483 (542)
63 KOG0337 ATP-dependent RNA heli 100.0 3.9E-34 8.5E-39 307.4 18.7 327 263-604 24-370 (529)
64 PRK09751 putative ATP-dependen 100.0 3.3E-33 7.2E-38 348.9 29.5 287 308-600 1-383 (1490)
65 PRK11131 ATP-dependent RNA hel 100.0 1E-33 2.2E-38 348.0 23.7 375 303-702 89-508 (1294)
66 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.5E-33 5.5E-38 345.7 25.2 376 303-702 82-499 (1283)
67 KOG0327 Translation initiation 100.0 1.4E-33 3.1E-38 302.1 19.8 322 269-604 36-372 (397)
68 TIGR01587 cas3_core CRISPR-ass 100.0 3E-32 6.4E-37 304.1 30.3 290 305-602 1-336 (358)
69 COG1643 HrpA HrpA-like helicas 100.0 1.6E-32 3.5E-37 327.2 23.3 376 303-701 65-479 (845)
70 COG1202 Superfamily II helicas 100.0 2.7E-32 5.9E-37 301.6 20.9 320 270-604 205-555 (830)
71 PRK09401 reverse gyrase; Revie 100.0 1.8E-31 3.9E-36 332.3 30.7 300 270-588 69-430 (1176)
72 PRK14701 reverse gyrase; Provi 100.0 4.9E-31 1.1E-35 334.7 30.9 311 270-598 68-452 (1638)
73 TIGR00603 rad25 DNA repair hel 100.0 9.9E-31 2.1E-35 308.6 30.1 316 279-618 253-623 (732)
74 PRK12898 secA preprotein trans 100.0 1.9E-30 4E-35 303.2 31.4 310 272-603 94-587 (656)
75 KOG0924 mRNA splicing factor A 100.0 2.1E-31 4.6E-36 298.2 21.0 375 303-701 371-789 (1042)
76 KOG0925 mRNA splicing factor A 100.0 4E-30 8.6E-35 279.9 23.3 370 303-701 62-479 (699)
77 PRK13766 Hef nuclease; Provisi 100.0 3.6E-29 7.8E-34 306.1 34.7 309 278-604 12-481 (773)
78 TIGR00963 secA preprotein tran 100.0 1.6E-29 3.5E-34 296.7 29.6 309 272-603 47-518 (745)
79 PRK09200 preprotein translocas 100.0 1.5E-29 3.2E-34 301.3 29.6 308 272-603 69-542 (790)
80 TIGR03158 cas3_cyano CRISPR-as 100.0 2.2E-29 4.8E-34 281.2 28.9 284 285-587 1-357 (357)
81 TIGR01054 rgy reverse gyrase. 100.0 1.3E-29 2.9E-34 316.1 29.5 286 270-574 67-410 (1171)
82 KOG0952 DNA/RNA helicase MER3/ 100.0 4.9E-29 1.1E-33 291.3 26.5 312 277-603 105-492 (1230)
83 COG1205 Distinct helicase fami 100.0 2.1E-28 4.6E-33 296.9 30.3 324 270-604 59-424 (851)
84 TIGR03714 secA2 accessory Sec 100.0 2.6E-28 5.6E-33 288.3 30.1 289 306-604 86-539 (762)
85 KOG0351 ATP-dependent DNA heli 100.0 2.6E-28 5.6E-33 294.6 24.0 316 270-604 252-594 (941)
86 COG4098 comFA Superfamily II D 100.0 3.5E-27 7.5E-32 248.9 29.2 315 280-621 96-432 (441)
87 PRK09694 helicase Cas3; Provis 100.0 5.8E-27 1.3E-31 283.6 34.8 302 279-591 284-664 (878)
88 KOG0352 ATP-dependent DNA heli 100.0 3.6E-28 7.8E-33 261.2 21.5 318 270-604 7-364 (641)
89 KOG0354 DEAD-box like helicase 100.0 6.3E-27 1.4E-31 271.8 28.5 304 279-601 60-528 (746)
90 COG1061 SSL2 DNA or RNA helica 100.0 5.9E-27 1.3E-31 268.3 27.0 291 276-589 31-376 (442)
91 KOG0329 ATP-dependent RNA heli 99.9 2E-27 4.3E-32 241.4 12.7 284 268-602 51-355 (387)
92 KOG0926 DEAH-box RNA helicase 99.9 1E-26 2.2E-31 264.5 19.5 384 304-707 272-802 (1172)
93 PRK04914 ATP-dependent helicas 99.9 2.5E-25 5.4E-30 271.0 30.3 307 279-601 150-602 (956)
94 KOG0353 ATP-dependent DNA heli 99.9 3.4E-25 7.4E-30 234.9 24.2 325 263-605 74-470 (695)
95 PRK12906 secA preprotein trans 99.9 1.4E-24 3.1E-29 257.2 27.1 309 272-603 71-554 (796)
96 PRK13104 secA preprotein trans 99.9 4.3E-24 9.4E-29 254.2 29.5 319 275-616 76-602 (896)
97 PRK12904 preprotein translocas 99.9 3E-24 6.6E-29 255.4 28.2 320 272-614 72-586 (830)
98 KOG0951 RNA helicase BRR2, DEA 99.9 1.7E-24 3.7E-29 255.7 22.6 304 281-600 309-700 (1674)
99 PRK11448 hsdR type I restricti 99.9 7.3E-24 1.6E-28 263.2 27.7 298 280-590 412-801 (1123)
100 PRK14873 primosome assembly pr 99.9 1E-23 2.2E-28 250.0 26.8 277 307-602 164-539 (665)
101 KOG0920 ATP-dependent RNA heli 99.9 1.7E-24 3.6E-29 257.8 20.0 387 284-698 176-635 (924)
102 KOG0947 Cytoplasmic exosomal R 99.9 1.7E-23 3.8E-28 242.5 24.0 306 271-602 287-723 (1248)
103 COG4581 Superfamily II RNA hel 99.9 7.7E-24 1.7E-28 254.6 19.1 310 273-603 111-538 (1041)
104 KOG0948 Nuclear exosomal RNA h 99.9 4.1E-24 8.9E-29 242.5 14.8 301 276-602 124-539 (1041)
105 COG1203 CRISPR-associated heli 99.9 2.8E-22 6.1E-27 242.6 22.4 312 281-603 195-551 (733)
106 PLN03142 Probable chromatin-re 99.9 3.3E-21 7.2E-26 235.9 29.9 313 280-605 168-602 (1033)
107 TIGR00631 uvrb excinuclease AB 99.9 1.3E-20 2.8E-25 224.1 34.0 123 478-603 428-554 (655)
108 PRK13107 preprotein translocas 99.9 1.8E-21 3.8E-26 231.4 26.0 319 275-616 76-606 (908)
109 PRK12899 secA preprotein trans 99.9 6.7E-21 1.5E-25 226.7 26.7 123 280-416 91-226 (970)
110 COG0556 UvrB Helicase subunit 99.9 2E-20 4.3E-25 207.6 25.7 165 431-601 386-556 (663)
111 PRK05298 excinuclease ABC subu 99.9 3.6E-19 7.9E-24 212.9 32.8 122 478-602 432-557 (652)
112 KOG0950 DNA polymerase theta/e 99.8 2.1E-20 4.6E-25 218.9 16.4 310 278-603 220-612 (1008)
113 cd00268 DEADc DEAD-box helicas 99.8 1.4E-19 3.1E-24 185.6 20.6 181 266-458 5-201 (203)
114 PRK13103 secA preprotein trans 99.8 7.3E-19 1.6E-23 209.4 26.5 304 276-603 77-592 (913)
115 PF00270 DEAD: DEAD/DEAH box h 99.8 1.5E-19 3.2E-24 179.3 17.2 149 283-442 1-163 (169)
116 PRK12326 preprotein translocas 99.8 4.8E-18 1E-22 198.2 31.9 307 272-602 69-547 (764)
117 TIGR00348 hsdR type I site-spe 99.8 8.3E-19 1.8E-23 210.5 25.7 296 281-589 238-634 (667)
118 KOG0349 Putative DEAD-box RNA 99.8 1.4E-19 3E-24 195.3 15.3 267 329-601 284-614 (725)
119 COG1110 Reverse gyrase [DNA re 99.8 2.7E-18 5.9E-23 202.1 26.7 284 270-574 71-418 (1187)
120 PRK12900 secA preprotein trans 99.8 3.4E-18 7.3E-23 204.3 26.8 119 481-604 587-713 (1025)
121 COG4096 HsdR Type I site-speci 99.8 7.7E-19 1.7E-23 204.3 19.9 291 280-590 164-526 (875)
122 TIGR01407 dinG_rel DnaQ family 99.8 3.5E-17 7.6E-22 201.9 32.8 317 278-602 242-814 (850)
123 KOG0385 Chromatin remodeling c 99.8 3.6E-17 7.8E-22 187.4 29.8 313 280-605 166-602 (971)
124 KOG0384 Chromodomain-helicase 99.8 4.7E-17 1E-21 194.2 25.8 355 241-607 320-816 (1373)
125 KOG1123 RNA polymerase II tran 99.7 2.8E-17 6.1E-22 180.5 14.4 336 250-616 278-667 (776)
126 PRK07246 bifunctional ATP-depe 99.7 1.9E-15 4.2E-20 184.7 31.2 313 279-602 243-783 (820)
127 KOG0387 Transcription-coupled 99.7 1.3E-15 2.9E-20 175.6 26.1 317 281-607 205-663 (923)
128 PRK12903 secA preprotein trans 99.7 1.1E-15 2.5E-20 180.6 25.5 307 272-602 69-539 (925)
129 CHL00122 secA preprotein trans 99.7 1.6E-15 3.5E-20 180.4 26.5 269 272-561 67-491 (870)
130 KOG0390 DNA repair protein, SN 99.7 6.8E-15 1.5E-19 173.8 27.6 320 281-605 238-710 (776)
131 smart00487 DEXDc DEAD-like hel 99.7 1.4E-15 3E-20 152.3 17.1 174 277-460 4-189 (201)
132 PF04851 ResIII: Type III rest 99.7 3.5E-16 7.6E-21 156.5 10.5 154 280-442 2-183 (184)
133 PRK12902 secA preprotein trans 99.7 1.7E-14 3.8E-19 171.4 26.2 267 274-561 78-506 (939)
134 PRK08074 bifunctional ATP-depe 99.6 2.3E-13 4.9E-18 169.3 32.7 120 481-602 740-893 (928)
135 PF03461 TRCF: TRCF domain; I 99.6 1.3E-15 2.9E-20 139.7 8.6 89 685-775 1-89 (101)
136 COG4889 Predicted helicase [Ge 99.6 1.7E-14 3.6E-19 166.7 19.2 321 268-597 148-583 (1518)
137 KOG0949 Predicted helicase, DE 99.6 1.7E-14 3.8E-19 168.7 18.7 150 280-443 510-673 (1330)
138 cd00079 HELICc Helicase superf 99.6 4.5E-15 9.8E-20 140.3 11.5 116 480-598 16-131 (131)
139 KOG0392 SNF2 family DNA-depend 99.6 3.2E-14 6.9E-19 169.6 20.9 311 281-604 975-1456(1549)
140 KOG0389 SNF2 family DNA-depend 99.6 1.6E-13 3.4E-18 158.5 24.6 312 280-604 398-890 (941)
141 KOG0953 Mitochondrial RNA heli 99.6 3.5E-14 7.7E-19 158.6 15.0 262 306-602 194-477 (700)
142 cd00046 DEXDc DEAD-like helica 99.6 4.3E-14 9.3E-19 133.2 13.3 131 305-441 2-144 (144)
143 PF00271 Helicase_C: Helicase 99.5 1.4E-14 3E-19 126.0 8.5 77 511-590 2-78 (78)
144 TIGR03117 cas_csf4 CRISPR-asso 99.5 4.8E-12 1E-16 149.4 32.4 116 481-601 458-616 (636)
145 PRK12901 secA preprotein trans 99.5 9E-12 1.9E-16 149.9 26.2 132 480-616 616-756 (1112)
146 KOG0951 RNA helicase BRR2, DEA 99.5 1.3E-12 2.8E-17 156.4 18.8 300 281-602 1143-1494(1674)
147 KOG1000 Chromatin remodeling p 99.5 6.6E-12 1.4E-16 138.9 22.9 316 281-617 198-618 (689)
148 PRK11747 dinG ATP-dependent DN 99.5 8.1E-11 1.7E-15 142.5 33.9 71 279-349 23-96 (697)
149 TIGR02562 cas3_yersinia CRISPR 99.4 2.8E-11 6E-16 146.4 27.9 316 271-591 398-881 (1110)
150 smart00490 HELICc helicase sup 99.4 1.1E-12 2.4E-17 113.4 9.4 81 507-590 2-82 (82)
151 KOG4150 Predicted ATP-dependen 99.4 2.3E-12 4.9E-17 143.7 13.1 309 281-602 286-640 (1034)
152 KOG0386 Chromatin remodeling c 99.4 8.6E-12 1.9E-16 147.4 16.3 310 281-602 394-838 (1157)
153 PF02559 CarD_CdnL_TRCF: CarD- 99.3 3E-12 6.4E-17 117.1 7.8 97 153-255 1-98 (98)
154 COG1199 DinG Rad3-related DNA 99.3 3.2E-10 7E-15 137.0 23.6 73 278-353 12-85 (654)
155 TIGR00604 rad3 DNA repair heli 99.3 1.6E-09 3.4E-14 132.0 29.2 75 276-353 4-82 (705)
156 KOG4439 RNA polymerase II tran 99.2 4.8E-10 1E-14 128.7 20.4 104 508-619 762-870 (901)
157 PF00176 SNF2_N: SNF2 family N 99.2 8.6E-11 1.9E-15 127.1 13.4 155 285-446 1-177 (299)
158 KOG0921 Dosage compensation co 99.2 2.1E-11 4.5E-16 142.2 6.1 370 304-698 394-864 (1282)
159 PF02399 Herpes_ori_bp: Origin 99.1 6.3E-09 1.4E-13 123.6 22.8 276 304-600 50-386 (824)
160 COG0653 SecA Preprotein transl 99.1 3.8E-09 8.2E-14 126.1 21.0 304 276-601 75-544 (822)
161 KOG0388 SNF2 family DNA-depend 99.1 3.3E-09 7.1E-14 121.5 18.9 113 489-604 1041-1156(1185)
162 KOG1002 Nucleotide excision re 99.1 2.8E-09 6.1E-14 118.1 17.4 109 493-604 639-751 (791)
163 PF07652 Flavi_DEAD: Flaviviru 99.1 9.4E-10 2E-14 106.2 10.5 127 303-445 4-140 (148)
164 COG0553 HepA Superfamily II DN 99.0 2.5E-08 5.3E-13 123.9 22.7 316 279-604 336-824 (866)
165 smart00489 DEXDc3 DEAD-like he 98.9 1.1E-08 2.3E-13 111.6 14.0 75 277-354 4-84 (289)
166 smart00488 DEXDc2 DEAD-like he 98.9 1.1E-08 2.3E-13 111.6 14.0 75 277-354 4-84 (289)
167 COG0610 Type I site-specific r 98.9 4E-08 8.7E-13 122.5 18.8 133 302-443 272-415 (962)
168 KOG1015 Transcription regulato 98.7 3E-06 6.4E-11 100.4 23.1 121 483-604 1133-1279(1567)
169 PF07517 SecA_DEAD: SecA DEAD- 98.6 6.1E-07 1.3E-11 96.2 14.1 130 272-417 68-209 (266)
170 PRK15483 type III restriction- 98.4 5.1E-06 1.1E-10 101.8 15.6 164 279-443 4-240 (986)
171 PF06862 DUF1253: Protein of u 98.4 6.1E-05 1.3E-09 86.0 23.0 266 331-602 37-415 (442)
172 PF13086 AAA_11: AAA domain; P 98.2 3.5E-06 7.6E-11 87.3 7.9 65 282-353 2-75 (236)
173 PF13604 AAA_30: AAA domain; P 98.1 1.4E-05 3.1E-10 82.3 11.3 125 281-437 1-127 (196)
174 KOG0391 SNF2 family DNA-depend 98.1 5E-06 1.1E-10 100.2 8.8 157 281-447 615-781 (1958)
175 PF02562 PhoH: PhoH-like prote 97.9 3.4E-05 7.4E-10 79.9 7.6 135 281-437 4-152 (205)
176 KOG1803 DNA helicase [Replicat 97.8 0.00011 2.5E-09 84.8 11.2 73 274-352 178-250 (649)
177 KOG0391 SNF2 family DNA-depend 97.8 0.00015 3.2E-09 88.1 11.5 119 485-606 1269-1391(1958)
178 KOG0952 DNA/RNA helicase MER3/ 97.7 9.2E-05 2E-09 89.6 9.7 132 274-420 921-1061(1230)
179 PF09848 DUF2075: Uncharacteri 97.7 7.5E-05 1.6E-09 83.9 8.6 50 305-354 3-54 (352)
180 TIGR00376 DNA helicase, putati 97.7 0.00027 5.8E-09 85.3 13.5 68 280-353 156-223 (637)
181 TIGR01448 recD_rel helicase, p 97.7 0.00076 1.7E-08 82.6 16.2 134 270-437 312-449 (720)
182 KOG1016 Predicted DNA helicase 97.6 0.0019 4.2E-08 76.0 18.0 82 521-603 764-850 (1387)
183 PF13872 AAA_34: P-loop contai 97.6 0.00043 9.4E-09 75.1 10.6 154 281-444 37-223 (303)
184 PRK10536 hypothetical protein; 97.5 0.0025 5.5E-08 68.1 16.1 136 280-436 58-208 (262)
185 TIGR01447 recD exodeoxyribonuc 97.5 0.0027 5.8E-08 75.9 16.8 129 283-437 147-292 (586)
186 PF12340 DUF3638: Protein of u 97.4 0.00092 2E-08 70.1 10.8 119 274-398 16-142 (229)
187 PF13307 Helicase_C_2: Helicas 97.4 0.00021 4.6E-09 71.7 5.6 100 491-592 8-140 (167)
188 PRK10875 recD exonuclease V su 97.4 0.0044 9.6E-08 74.4 17.4 143 269-437 138-298 (615)
189 PF13245 AAA_19: Part of AAA d 97.4 0.00038 8.2E-09 60.7 6.1 47 305-351 12-62 (76)
190 PF13401 AAA_22: AAA domain; P 97.4 0.0011 2.3E-08 62.9 9.7 113 303-441 4-125 (131)
191 KOG0344 ATP-dependent RNA heli 97.3 0.00034 7.3E-09 80.6 5.7 127 304-445 358-486 (593)
192 KOG1802 RNA helicase nonsense 97.2 0.0015 3.3E-08 76.1 10.7 83 273-367 402-485 (935)
193 TIGR02768 TraA_Ti Ti-type conj 97.2 0.0077 1.7E-07 74.2 17.2 122 278-437 349-473 (744)
194 PRK04296 thymidine kinase; Pro 97.1 0.00081 1.7E-08 69.0 6.5 36 304-339 3-38 (190)
195 TIGR03015 pepcterm_ATPase puta 97.1 0.0055 1.2E-07 65.7 12.7 42 280-323 22-63 (269)
196 KOG2340 Uncharacterized conser 97.1 0.01 2.3E-07 67.8 14.8 108 493-603 553-669 (698)
197 PF05970 PIF1: PIF1-like helic 97.0 0.0019 4.1E-08 73.1 8.8 119 281-424 1-121 (364)
198 TIGR01073 pcrA ATP-dependent D 97.0 0.03 6.4E-07 69.1 19.5 79 281-368 4-87 (726)
199 PF00580 UvrD-helicase: UvrD/R 97.0 0.0011 2.5E-08 71.9 6.4 67 282-357 1-71 (315)
200 cd00009 AAA The AAA+ (ATPases 97.0 0.0071 1.5E-07 57.0 10.9 54 286-340 3-56 (151)
201 PF00448 SRP54: SRP54-type pro 96.9 0.014 3E-07 60.3 13.6 124 304-450 2-134 (196)
202 TIGR02760 TraI_TIGR conjugativ 96.9 0.034 7.3E-07 75.0 20.7 235 279-543 427-685 (1960)
203 PRK12723 flagellar biosynthesi 96.9 0.013 2.8E-07 66.7 13.9 122 302-451 173-307 (388)
204 PRK13889 conjugal transfer rel 96.8 0.021 4.7E-07 71.7 16.5 123 278-438 343-468 (988)
205 COG3587 Restriction endonuclea 96.8 0.0085 1.9E-07 72.0 12.0 135 303-442 74-243 (985)
206 PRK13826 Dtr system oriT relax 96.8 0.03 6.6E-07 70.9 17.2 122 279-438 379-503 (1102)
207 PRK08181 transposase; Validate 96.8 0.025 5.4E-07 61.3 14.2 79 265-347 71-149 (269)
208 PRK06526 transposase; Provisio 96.7 0.0073 1.6E-07 64.9 9.9 36 302-337 97-132 (254)
209 smart00382 AAA ATPases associa 96.7 0.0036 7.8E-08 58.3 6.8 42 303-344 2-43 (148)
210 PF05496 RuvB_N: Holliday junc 96.7 0.0041 9E-08 65.1 7.6 83 405-487 101-190 (233)
211 PRK14974 cell division protein 96.7 0.064 1.4E-06 60.0 17.4 126 302-450 139-273 (336)
212 PRK14873 primosome assembly pr 96.7 0.0089 1.9E-07 72.5 11.2 93 478-571 174-266 (665)
213 KOG1132 Helicase of the DEAD s 96.6 0.012 2.5E-07 71.2 11.4 50 273-325 13-62 (945)
214 COG2256 MGS1 ATPase related to 96.6 0.019 4.1E-07 64.3 12.3 35 407-441 106-140 (436)
215 PRK10689 transcription-repair 96.6 0.0089 1.9E-07 76.6 10.7 95 323-421 801-895 (1147)
216 TIGR00580 mfd transcription-re 96.5 0.0095 2.1E-07 74.7 10.5 94 324-421 653-746 (926)
217 PRK14962 DNA polymerase III su 96.5 0.045 9.7E-07 64.0 15.4 40 286-325 19-58 (472)
218 PRK10917 ATP-dependent DNA hel 96.5 0.011 2.3E-07 72.4 10.1 96 487-582 305-403 (681)
219 PRK07952 DNA replication prote 96.5 0.058 1.2E-06 57.7 14.4 55 283-337 78-133 (244)
220 PRK06645 DNA polymerase III su 96.4 0.063 1.4E-06 63.2 15.7 43 285-327 25-67 (507)
221 KOG1805 DNA replication helica 96.4 0.015 3.3E-07 70.8 10.5 125 280-417 668-808 (1100)
222 PRK11889 flhF flagellar biosyn 96.4 0.06 1.3E-06 61.1 14.5 123 303-450 241-371 (436)
223 TIGR00643 recG ATP-dependent D 96.4 0.012 2.6E-07 71.4 9.8 95 485-579 277-374 (630)
224 PRK08084 DNA replication initi 96.3 0.027 6E-07 59.7 10.9 53 286-339 29-81 (235)
225 COG3421 Uncharacterized protei 96.3 0.039 8.5E-07 64.2 12.4 101 308-419 2-126 (812)
226 COG1197 Mfd Transcription-repa 96.2 0.019 4E-07 71.9 10.4 98 326-427 798-895 (1139)
227 PRK14956 DNA polymerase III su 96.2 0.019 4.1E-07 66.7 9.7 42 285-326 22-63 (484)
228 TIGR00595 priA primosomal prot 96.2 0.02 4.3E-07 67.6 10.2 90 481-572 14-103 (505)
229 PRK05580 primosome assembly pr 96.2 0.023 5.1E-07 69.4 11.0 89 483-573 181-269 (679)
230 TIGR00064 ftsY signal recognit 96.2 0.085 1.8E-06 57.3 14.1 52 303-354 72-125 (272)
231 PRK08691 DNA polymerase III su 96.2 0.033 7.2E-07 67.2 11.8 41 286-326 21-61 (709)
232 PRK07994 DNA polymerase III su 96.2 0.075 1.6E-06 64.2 14.7 41 286-326 21-61 (647)
233 COG1198 PriA Primosomal protei 96.1 0.028 6E-07 68.4 10.7 90 478-569 231-320 (730)
234 PRK14958 DNA polymerase III su 96.1 0.045 9.7E-07 64.6 12.3 42 286-327 21-62 (509)
235 PRK05703 flhF flagellar biosyn 96.0 0.068 1.5E-06 61.7 12.7 123 303-453 221-354 (424)
236 PRK14964 DNA polymerase III su 95.9 0.047 1E-06 63.9 11.4 41 286-326 18-58 (491)
237 PHA03333 putative ATPase subun 95.9 0.16 3.4E-06 61.0 15.6 164 276-446 164-337 (752)
238 PRK11054 helD DNA helicase IV; 95.9 0.021 4.6E-07 69.6 8.8 88 272-369 187-278 (684)
239 PRK13342 recombination factor 95.9 0.041 8.8E-07 63.4 10.5 37 405-441 92-128 (413)
240 TIGR00631 uvrb excinuclease AB 95.9 0.038 8.2E-07 67.1 10.6 87 327-419 438-524 (655)
241 PRK00771 signal recognition pa 95.9 0.11 2.4E-06 60.2 13.8 52 302-353 94-147 (437)
242 PRK07003 DNA polymerase III su 95.9 0.13 2.8E-06 62.7 14.6 42 286-327 21-62 (830)
243 PRK14960 DNA polymerase III su 95.9 0.059 1.3E-06 64.7 11.8 42 286-327 20-61 (702)
244 PRK14712 conjugal transfer nic 95.8 0.046 9.9E-07 71.5 11.4 136 270-438 824-965 (1623)
245 PRK14949 DNA polymerase III su 95.7 0.16 3.5E-06 62.9 15.1 41 286-326 21-61 (944)
246 COG1435 Tdk Thymidine kinase [ 95.7 0.042 9E-07 56.2 8.6 100 304-431 5-108 (201)
247 TIGR03420 DnaA_homol_Hda DnaA 95.7 0.073 1.6E-06 55.4 10.9 51 285-336 21-71 (226)
248 PRK09111 DNA polymerase III su 95.7 0.06 1.3E-06 64.7 11.3 42 286-327 29-70 (598)
249 PRK14963 DNA polymerase III su 95.7 0.17 3.6E-06 59.8 14.8 41 286-326 19-59 (504)
250 PRK09112 DNA polymerase III su 95.7 0.12 2.6E-06 58.2 13.0 44 286-329 28-71 (351)
251 PRK13341 recombination factor 95.6 0.071 1.5E-06 65.4 11.7 37 405-441 109-145 (725)
252 PRK14957 DNA polymerase III su 95.6 0.075 1.6E-06 63.1 11.6 42 285-326 20-61 (546)
253 PRK14722 flhF flagellar biosyn 95.6 0.13 2.7E-06 58.4 12.8 120 302-449 136-265 (374)
254 PRK14961 DNA polymerase III su 95.6 0.076 1.6E-06 60.1 11.0 42 285-326 20-61 (363)
255 PRK10919 ATP-dependent DNA hel 95.6 0.022 4.7E-07 69.7 6.9 79 281-368 2-86 (672)
256 PRK14952 DNA polymerase III su 95.6 0.26 5.6E-06 59.2 15.7 41 286-326 18-58 (584)
257 PRK07764 DNA polymerase III su 95.5 0.22 4.8E-06 62.0 15.6 43 286-328 20-62 (824)
258 PRK08903 DnaA regulatory inact 95.5 0.13 2.9E-06 53.9 11.8 37 302-338 41-77 (227)
259 PRK12323 DNA polymerase III su 95.5 0.094 2E-06 62.9 11.4 43 286-328 21-63 (700)
260 PRK08727 hypothetical protein; 95.5 0.066 1.4E-06 56.7 9.3 35 304-338 42-76 (233)
261 TIGR02881 spore_V_K stage V sp 95.4 0.087 1.9E-06 56.7 10.4 22 303-324 42-63 (261)
262 TIGR00635 ruvB Holliday juncti 95.4 0.15 3.4E-06 55.8 12.5 21 302-322 29-49 (305)
263 COG1875 NYN ribonuclease and A 95.4 0.038 8.2E-07 61.3 7.3 63 277-344 223-289 (436)
264 PRK07133 DNA polymerase III su 95.4 0.3 6.4E-06 59.7 15.6 42 285-326 22-63 (725)
265 PRK05896 DNA polymerase III su 95.3 0.14 3E-06 61.2 12.4 44 285-328 20-63 (605)
266 cd01120 RecA-like_NTPases RecA 95.3 0.077 1.7E-06 51.4 8.8 39 306-344 2-40 (165)
267 PF13177 DNA_pol3_delta2: DNA 95.3 0.18 3.9E-06 50.4 11.5 44 286-329 2-45 (162)
268 COG1419 FlhF Flagellar GTP-bin 95.3 0.32 7E-06 55.2 14.5 124 303-454 203-336 (407)
269 cd01124 KaiC KaiC is a circadi 95.3 0.054 1.2E-06 54.5 7.8 47 306-353 2-48 (187)
270 KOG1001 Helicase-like transcri 95.3 0.11 2.3E-06 63.1 11.4 135 304-449 153-300 (674)
271 PRK13709 conjugal transfer nic 95.3 0.11 2.3E-06 69.0 12.1 133 273-438 959-1097(1747)
272 PRK14969 DNA polymerase III su 95.3 0.15 3.3E-06 60.6 12.5 41 286-326 21-61 (527)
273 PRK05563 DNA polymerase III su 95.2 0.14 3.1E-06 61.2 12.0 41 286-326 21-61 (559)
274 PTZ00293 thymidine kinase; Pro 95.2 0.077 1.7E-06 55.3 8.5 39 303-341 4-42 (211)
275 TIGR02760 TraI_TIGR conjugativ 95.1 0.19 4E-06 68.2 14.1 123 279-436 1017-1145(1960)
276 COG1200 RecG RecG-like helicas 95.1 0.082 1.8E-06 63.0 9.5 101 483-583 302-405 (677)
277 smart00492 HELICc3 helicase su 95.1 0.16 3.4E-06 49.7 10.1 49 524-572 27-78 (141)
278 PRK14953 DNA polymerase III su 95.1 0.5 1.1E-05 55.6 16.1 41 285-325 20-60 (486)
279 PRK00411 cdc6 cell division co 95.1 0.26 5.6E-06 56.1 13.5 42 283-324 35-76 (394)
280 PRK14950 DNA polymerase III su 95.1 0.17 3.7E-06 60.9 12.5 41 285-325 20-60 (585)
281 PF00265 TK: Thymidine kinase; 95.1 0.085 1.8E-06 53.6 8.4 36 306-341 4-39 (176)
282 PTZ00112 origin recognition co 95.1 0.2 4.3E-06 61.7 12.6 41 283-323 760-801 (1164)
283 COG3267 ExeA Type II secretory 95.1 0.17 3.8E-06 53.8 10.8 86 249-343 5-90 (269)
284 PRK12724 flagellar biosynthesi 95.1 0.66 1.4E-05 53.3 16.2 122 303-453 223-356 (432)
285 PRK14955 DNA polymerase III su 95.0 0.14 3.1E-06 58.6 11.0 43 285-327 20-62 (397)
286 PRK14951 DNA polymerase III su 95.0 0.41 8.8E-06 57.8 15.2 42 286-327 21-62 (618)
287 PRK00149 dnaA chromosomal repl 95.0 0.15 3.2E-06 59.5 11.2 42 304-346 149-192 (450)
288 PF05127 Helicase_RecD: Helica 95.0 0.015 3.3E-07 59.0 2.6 122 307-441 1-123 (177)
289 PRK06893 DNA replication initi 95.0 0.085 1.8E-06 55.7 8.4 34 305-338 41-74 (229)
290 PRK10416 signal recognition pa 95.0 0.27 5.8E-06 54.7 12.6 128 302-451 113-254 (318)
291 TIGR02397 dnaX_nterm DNA polym 94.9 0.5 1.1E-05 52.8 14.8 41 285-325 18-58 (355)
292 PRK14965 DNA polymerase III su 94.9 0.2 4.2E-06 60.3 12.1 41 286-326 21-61 (576)
293 TIGR01074 rep ATP-dependent DN 94.9 0.045 9.8E-07 66.8 7.0 80 281-369 1-86 (664)
294 PRK14954 DNA polymerase III su 94.9 0.16 3.5E-06 61.3 11.3 43 285-327 20-62 (620)
295 COG1484 DnaC DNA replication p 94.9 0.19 4.2E-06 54.0 10.8 70 282-352 84-153 (254)
296 smart00491 HELICc2 helicase su 94.8 0.15 3.2E-06 50.0 9.0 66 505-572 4-79 (142)
297 TIGR00362 DnaA chromosomal rep 94.8 0.17 3.7E-06 58.1 10.8 55 283-338 115-173 (405)
298 PRK12402 replication factor C 94.7 0.67 1.5E-05 51.3 15.2 41 286-327 20-60 (337)
299 PRK08769 DNA polymerase III su 94.7 0.27 5.8E-06 54.7 11.8 50 281-330 4-53 (319)
300 PRK11773 uvrD DNA-dependent he 94.7 0.056 1.2E-06 66.7 7.2 79 281-368 9-92 (721)
301 PRK05707 DNA polymerase III su 94.7 0.28 6.1E-06 54.8 12.0 45 282-329 4-48 (328)
302 TIGR01075 uvrD DNA helicase II 94.7 0.05 1.1E-06 67.1 6.7 79 281-368 4-87 (715)
303 TIGR02928 orc1/cdc6 family rep 94.7 0.24 5.2E-06 55.6 11.6 39 283-321 20-58 (365)
304 KOG2028 ATPase related to the 94.6 0.12 2.6E-06 57.3 8.4 105 300-446 159-263 (554)
305 COG4098 comFA Superfamily II D 94.6 0.15 3.3E-06 56.0 9.1 89 323-417 297-385 (441)
306 TIGR01425 SRP54_euk signal rec 94.6 0.55 1.2E-05 54.2 14.2 51 303-353 100-152 (429)
307 PRK12726 flagellar biosynthesi 94.6 0.79 1.7E-05 52.0 15.1 37 302-338 205-241 (407)
308 PRK07471 DNA polymerase III su 94.6 0.51 1.1E-05 53.5 13.8 45 285-329 23-67 (365)
309 PHA02533 17 large terminase pr 94.6 0.33 7.1E-06 57.7 12.7 75 278-359 56-132 (534)
310 PRK05298 excinuclease ABC subu 94.5 0.2 4.3E-06 61.1 11.0 86 328-419 443-528 (652)
311 PLN03025 replication factor C 94.5 0.27 6E-06 54.5 11.3 27 301-327 32-58 (319)
312 COG2805 PilT Tfp pilus assembl 94.5 0.2 4.4E-06 54.5 9.6 40 289-330 112-151 (353)
313 PRK12727 flagellar biosynthesi 94.5 0.65 1.4E-05 54.8 14.5 118 302-447 349-475 (559)
314 PRK06647 DNA polymerase III su 94.4 0.32 6.9E-06 58.2 12.3 41 286-326 21-61 (563)
315 PRK06871 DNA polymerase III su 94.4 0.43 9.4E-06 53.2 12.5 48 282-329 3-50 (325)
316 COG0552 FtsY Signal recognitio 94.4 1.5 3.3E-05 48.5 16.4 130 301-452 137-280 (340)
317 cd00561 CobA_CobO_BtuR ATP:cor 94.4 0.2 4.4E-06 50.0 8.9 36 306-341 5-40 (159)
318 PRK14948 DNA polymerase III su 94.4 0.38 8.3E-06 58.2 12.9 43 285-327 20-62 (620)
319 PRK14959 DNA polymerase III su 94.4 0.58 1.2E-05 56.4 14.2 42 286-327 21-62 (624)
320 cd03115 SRP The signal recogni 94.3 0.93 2E-05 45.3 13.8 33 306-338 3-35 (173)
321 TIGR00596 rad1 DNA repair prot 94.3 0.17 3.8E-06 62.7 9.9 52 549-604 431-516 (814)
322 PRK04537 ATP-dependent RNA hel 94.3 0.2 4.3E-06 60.3 10.2 79 329-413 255-333 (572)
323 TIGR02880 cbbX_cfxQ probable R 94.3 0.49 1.1E-05 51.7 12.5 21 303-323 58-78 (284)
324 TIGR03499 FlhF flagellar biosy 94.3 0.15 3.3E-06 55.6 8.6 37 302-338 193-231 (282)
325 PRK05642 DNA replication initi 94.3 0.41 9E-06 50.7 11.6 35 304-338 46-80 (234)
326 PTZ00110 helicase; Provisional 94.2 0.23 5E-06 59.3 10.5 85 321-411 366-451 (545)
327 COG0556 UvrB Helicase subunit 94.1 0.21 4.5E-06 57.9 9.3 88 326-419 441-528 (663)
328 PRK07940 DNA polymerase III su 94.1 0.29 6.3E-06 56.0 10.7 25 303-327 36-60 (394)
329 COG1474 CDC6 Cdc6-related prot 94.1 0.42 9.1E-06 54.2 11.7 44 281-324 20-63 (366)
330 PRK14971 DNA polymerase III su 94.0 0.35 7.6E-06 58.5 11.6 41 286-326 22-62 (614)
331 TIGR00959 ffh signal recogniti 94.0 0.25 5.4E-06 57.1 9.9 51 303-353 99-152 (428)
332 CHL00181 cbbX CbbX; Provisiona 94.0 0.56 1.2E-05 51.4 12.2 23 303-325 59-81 (287)
333 PRK08451 DNA polymerase III su 94.0 0.39 8.4E-06 57.0 11.6 42 286-327 19-60 (535)
334 PHA02544 44 clamp loader, smal 94.0 0.34 7.3E-06 53.4 10.6 21 303-323 43-63 (316)
335 PRK00080 ruvB Holliday junctio 93.9 0.44 9.4E-06 53.1 11.5 24 301-324 49-72 (328)
336 PRK04837 ATP-dependent RNA hel 93.9 0.16 3.6E-06 58.4 8.3 78 330-413 254-331 (423)
337 PF05876 Terminase_GpA: Phage 93.9 0.065 1.4E-06 64.0 4.9 126 281-417 16-146 (557)
338 PRK06731 flhF flagellar biosyn 93.8 1.6 3.6E-05 47.4 15.1 121 303-449 75-204 (270)
339 COG1221 PspF Transcriptional r 93.7 0.26 5.6E-06 56.2 9.2 120 287-441 88-222 (403)
340 TIGR00614 recQ_fam ATP-depende 93.7 0.31 6.8E-06 57.1 10.2 78 329-412 224-301 (470)
341 TIGR03878 thermo_KaiC_2 KaiC d 93.7 0.14 3E-06 55.3 6.6 39 301-339 34-72 (259)
342 PRK12422 chromosomal replicati 93.7 0.85 1.8E-05 53.1 13.5 36 304-339 142-177 (445)
343 PRK07993 DNA polymerase III su 93.6 0.64 1.4E-05 52.1 12.0 48 282-329 3-50 (334)
344 PRK10590 ATP-dependent RNA hel 93.6 0.33 7.2E-06 56.6 10.1 75 331-411 245-319 (456)
345 PRK11192 ATP-dependent RNA hel 93.5 0.32 6.9E-06 56.2 9.8 76 330-411 244-319 (434)
346 PRK13767 ATP-dependent helicas 93.5 0.3 6.4E-06 61.7 10.2 90 324-414 277-367 (876)
347 PF00308 Bac_DnaA: Bacterial d 93.5 0.65 1.4E-05 48.8 11.2 35 304-339 35-72 (219)
348 PRK08058 DNA polymerase III su 93.5 0.7 1.5E-05 51.6 12.0 44 285-328 10-53 (329)
349 PRK14970 DNA polymerase III su 93.5 0.62 1.3E-05 52.6 11.8 39 285-323 21-59 (367)
350 COG1444 Predicted P-loop ATPas 93.4 0.55 1.2E-05 57.3 11.7 145 281-442 211-357 (758)
351 PRK08533 flagellar accessory p 93.4 0.82 1.8E-05 48.4 11.7 51 301-352 22-72 (230)
352 PRK14088 dnaA chromosomal repl 93.3 1 2.2E-05 52.5 13.4 57 283-339 110-168 (440)
353 cd00079 HELICc Helicase superf 93.3 0.63 1.4E-05 43.3 9.9 80 330-415 27-106 (131)
354 KOG0298 DEAD box-containing he 93.3 0.15 3.2E-06 64.1 6.7 135 301-444 372-553 (1394)
355 cd01122 GP4d_helicase GP4d_hel 93.3 0.39 8.4E-06 51.7 9.4 51 302-353 29-80 (271)
356 cd00983 recA RecA is a bacter 93.3 0.21 4.5E-06 55.6 7.4 58 288-347 41-99 (325)
357 PRK10867 signal recognition pa 93.3 0.41 8.9E-06 55.4 10.0 51 303-353 100-153 (433)
358 PRK11034 clpA ATP-dependent Cl 93.3 0.59 1.3E-05 57.8 11.9 39 285-323 462-508 (758)
359 KOG0349 Putative DEAD-box RNA 93.2 0.021 4.5E-07 63.9 -0.6 43 279-328 22-64 (725)
360 PRK10865 protein disaggregatio 93.2 0.34 7.4E-06 60.9 9.9 40 285-324 572-619 (857)
361 KOG0989 Replication factor C, 93.1 0.27 5.9E-06 53.6 7.5 43 284-327 39-81 (346)
362 COG1329 Transcriptional regula 93.0 0.15 3.3E-06 50.4 5.2 51 152-204 3-55 (166)
363 KOG1513 Nuclear helicase MOP-3 93.0 0.052 1.1E-06 64.7 2.2 155 281-441 264-454 (1300)
364 KOG0331 ATP-dependent RNA heli 93.0 0.31 6.8E-06 57.0 8.5 92 313-411 322-415 (519)
365 PF01443 Viral_helicase1: Vira 93.0 0.13 2.7E-06 53.9 4.9 33 404-436 61-93 (234)
366 PRK05986 cob(I)alamin adenolsy 93.0 0.43 9.2E-06 49.1 8.5 39 303-341 22-60 (191)
367 PRK06090 DNA polymerase III su 92.9 1.3 2.8E-05 49.4 12.9 49 281-329 3-51 (319)
368 PRK14087 dnaA chromosomal repl 92.9 1.3 2.8E-05 51.7 13.6 46 304-351 142-190 (450)
369 TIGR02012 tigrfam_recA protein 92.9 0.3 6.5E-06 54.3 7.9 46 301-346 53-98 (321)
370 PRK09183 transposase/IS protei 92.9 0.5 1.1E-05 51.0 9.4 45 301-346 100-144 (259)
371 TIGR01547 phage_term_2 phage t 92.9 0.3 6.4E-06 55.8 8.1 131 305-443 3-142 (396)
372 PF00004 AAA: ATPase family as 92.9 0.58 1.2E-05 43.8 8.8 19 306-324 1-19 (132)
373 PRK07399 DNA polymerase III su 92.8 0.89 1.9E-05 50.5 11.6 45 286-330 9-53 (314)
374 PRK12377 putative replication 92.8 2.2 4.8E-05 45.8 14.2 64 283-349 80-146 (248)
375 COG0470 HolB ATPase involved i 92.8 0.55 1.2E-05 51.5 9.9 25 305-329 26-50 (325)
376 PRK08116 hypothetical protein; 92.8 2.4 5.2E-05 46.0 14.6 67 282-349 89-159 (268)
377 TIGR02639 ClpA ATP-dependent C 92.8 0.69 1.5E-05 57.3 11.7 40 285-324 458-505 (731)
378 TIGR02639 ClpA ATP-dependent C 92.7 0.63 1.4E-05 57.6 11.2 41 286-327 187-227 (731)
379 PRK13833 conjugal transfer pro 92.7 0.23 4.9E-06 55.3 6.6 64 272-344 121-187 (323)
380 PRK00440 rfc replication facto 92.7 0.91 2E-05 49.7 11.4 38 286-324 22-59 (319)
381 PF01695 IstB_IS21: IstB-like 92.7 0.21 4.5E-06 50.8 5.8 45 301-346 45-89 (178)
382 TIGR00678 holB DNA polymerase 92.7 1 2.2E-05 45.7 11.0 27 302-328 13-39 (188)
383 TIGR02782 TrbB_P P-type conjug 92.6 0.28 6.1E-06 54.1 7.1 64 272-344 109-175 (299)
384 COG0513 SrmB Superfamily II DN 92.6 0.52 1.1E-05 55.9 9.8 74 331-410 273-346 (513)
385 PRK05564 DNA polymerase III su 92.6 1.2 2.6E-05 49.3 12.1 41 286-326 9-49 (313)
386 PRK06305 DNA polymerase III su 92.5 0.87 1.9E-05 53.1 11.4 43 286-328 22-64 (451)
387 COG2255 RuvB Holliday junction 92.5 0.71 1.5E-05 50.0 9.6 23 301-323 50-72 (332)
388 KOG1133 Helicase of the DEAD s 92.5 0.18 4E-06 59.8 5.7 48 278-328 12-59 (821)
389 TIGR02785 addA_Gpos recombinat 92.4 0.26 5.5E-06 64.5 7.6 67 281-356 1-70 (1232)
390 cd01393 recA_like RecA is a b 92.3 0.54 1.2E-05 49.0 8.6 41 301-341 17-63 (226)
391 TIGR03877 thermo_KaiC_1 KaiC d 92.3 0.21 4.6E-06 53.0 5.6 52 301-353 19-70 (237)
392 PRK11776 ATP-dependent RNA hel 92.3 0.55 1.2E-05 54.8 9.5 77 330-412 241-317 (460)
393 PTZ00424 helicase 45; Provisio 92.3 0.41 9E-06 54.4 8.3 76 331-412 267-342 (401)
394 COG3973 Superfamily I DNA and 92.2 0.41 8.9E-06 56.4 8.0 53 301-353 224-282 (747)
395 PRK09354 recA recombinase A; P 92.2 0.41 8.9E-06 53.7 7.8 56 289-346 47-103 (349)
396 TIGR02237 recomb_radB DNA repa 92.1 0.5 1.1E-05 48.7 8.0 40 301-340 10-49 (209)
397 PRK01297 ATP-dependent RNA hel 92.1 0.67 1.4E-05 54.3 10.0 76 331-412 335-410 (475)
398 PLN00206 DEAD-box ATP-dependen 92.1 0.62 1.4E-05 55.3 9.8 76 331-411 367-442 (518)
399 PRK13894 conjugal transfer ATP 92.0 0.25 5.5E-06 54.9 6.0 63 272-343 125-190 (319)
400 PF03354 Terminase_1: Phage Te 91.9 0.44 9.5E-06 56.0 8.1 76 284-359 1-82 (477)
401 PF13871 Helicase_C_4: Helicas 91.9 0.41 8.9E-06 52.0 7.2 67 535-602 52-127 (278)
402 PF05621 TniB: Bacterial TniB 91.9 0.82 1.8E-05 50.2 9.5 54 302-355 60-120 (302)
403 PF06745 KaiC: KaiC; InterPro 91.9 0.19 4E-06 52.7 4.5 52 301-353 17-69 (226)
404 COG1110 Reverse gyrase [DNA re 91.9 0.26 5.5E-06 61.0 6.1 82 490-572 123-213 (1187)
405 PRK11057 ATP-dependent DNA hel 91.7 0.49 1.1E-05 57.3 8.5 77 329-411 234-310 (607)
406 PRK11634 ATP-dependent RNA hel 91.7 0.48 1E-05 57.6 8.2 76 330-411 244-319 (629)
407 PRK06921 hypothetical protein; 91.7 2.1 4.5E-05 46.4 12.4 45 302-347 116-161 (266)
408 CHL00176 ftsH cell division pr 91.6 2.6 5.7E-05 51.3 14.4 20 302-321 215-234 (638)
409 PHA02244 ATPase-like protein 91.5 2 4.3E-05 48.7 12.2 38 283-323 102-139 (383)
410 TIGR03345 VI_ClpV1 type VI sec 91.5 0.62 1.3E-05 58.6 9.2 54 285-339 570-631 (852)
411 TIGR00708 cobA cob(I)alamin ad 91.5 1.2 2.5E-05 45.2 9.5 35 305-339 7-41 (173)
412 PRK13900 type IV secretion sys 91.4 0.28 6.1E-06 54.9 5.6 41 303-344 160-200 (332)
413 PHA03368 DNA packaging termina 91.4 1.2 2.6E-05 53.6 10.8 158 304-475 255-418 (738)
414 PHA02558 uvsW UvsW helicase; P 91.3 0.71 1.5E-05 54.6 9.0 79 329-412 342-420 (501)
415 COG2804 PulE Type II secretory 91.2 0.36 7.7E-06 56.1 6.2 43 282-330 242-284 (500)
416 KOG0333 U5 snRNP-like RNA heli 91.2 0.71 1.5E-05 53.5 8.3 74 331-410 517-590 (673)
417 PRK06964 DNA polymerase III su 91.2 1.7 3.7E-05 48.9 11.3 45 283-329 3-47 (342)
418 TIGR02640 gas_vesic_GvpN gas v 91.1 0.47 1E-05 51.2 6.8 52 280-337 1-52 (262)
419 COG4962 CpaF Flp pilus assembl 91.1 0.25 5.5E-06 54.8 4.5 60 281-347 157-216 (355)
420 PRK13851 type IV secretion sys 90.9 0.31 6.7E-06 54.8 5.2 41 303-344 162-202 (344)
421 PRK09694 helicase Cas3; Provis 90.7 1.4 3E-05 55.5 11.0 91 320-414 549-647 (878)
422 PRK06995 flhF flagellar biosyn 90.6 2.8 6.1E-05 49.2 12.8 122 303-452 256-387 (484)
423 KOG0383 Predicted helicase [Ge 90.6 0.16 3.5E-06 61.3 2.7 65 490-557 629-696 (696)
424 PRK14723 flhF flagellar biosyn 90.6 2.5 5.5E-05 52.1 12.8 119 303-449 185-313 (767)
425 TIGR03817 DECH_helic helicase/ 90.5 0.9 2E-05 56.3 9.2 88 326-414 266-356 (742)
426 TIGR03689 pup_AAA proteasome A 90.5 1.4 3E-05 52.1 10.3 21 301-321 214-234 (512)
427 TIGR03346 chaperone_ClpB ATP-d 90.5 1.5 3.3E-05 55.2 11.3 39 286-325 178-216 (852)
428 TIGR01241 FtsH_fam ATP-depende 90.4 3.5 7.6E-05 48.7 13.6 21 301-321 86-106 (495)
429 PRK11034 clpA ATP-dependent Cl 90.3 1.4 3E-05 54.7 10.4 25 302-326 206-230 (758)
430 TIGR01587 cas3_core CRISPR-ass 90.2 1.8 4E-05 48.4 10.7 85 324-413 215-303 (358)
431 PF02456 Adeno_IVa2: Adenoviru 90.2 0.45 9.7E-06 52.0 5.3 39 303-342 87-128 (369)
432 PF00158 Sigma54_activat: Sigm 90.0 1 2.2E-05 45.4 7.5 20 301-320 20-39 (168)
433 COG3972 Superfamily I DNA and 90.0 2.8 6.1E-05 48.6 11.6 146 270-425 152-315 (660)
434 PRK03992 proteasome-activating 89.7 2.5 5.4E-05 48.4 11.4 22 301-322 163-184 (389)
435 TIGR00767 rho transcription te 89.6 1.8 3.9E-05 49.5 9.8 28 301-329 166-193 (415)
436 COG4626 Phage terminase-like p 89.5 3.6 7.8E-05 48.5 12.4 146 276-441 56-225 (546)
437 PHA00350 putative assembly pro 89.5 0.8 1.7E-05 52.3 7.0 31 305-335 3-34 (399)
438 cd01130 VirB11-like_ATPase Typ 89.4 0.68 1.5E-05 47.1 5.9 52 281-339 9-60 (186)
439 PRK11823 DNA repair protein Ra 89.4 1.6 3.4E-05 50.9 9.6 50 302-352 79-128 (446)
440 PRK05973 replicative DNA helic 89.4 0.48 1E-05 50.5 4.8 52 301-353 62-113 (237)
441 TIGR01389 recQ ATP-dependent D 89.3 1.1 2.3E-05 54.2 8.4 75 331-411 224-298 (591)
442 PRK04328 hypothetical protein; 89.2 0.6 1.3E-05 50.0 5.6 52 301-353 21-72 (249)
443 cd01394 radB RadB. The archaea 89.2 1.9 4.1E-05 44.8 9.2 37 301-337 17-53 (218)
444 PF02572 CobA_CobO_BtuR: ATP:c 89.0 3.3 7.1E-05 42.0 10.3 130 306-447 6-144 (172)
445 cd01121 Sms Sms (bacterial rad 88.8 1.3 2.9E-05 50.3 8.2 50 302-352 81-130 (372)
446 CHL00095 clpC Clp protease ATP 88.8 1.2 2.5E-05 56.1 8.4 43 284-326 512-562 (821)
447 cd01129 PulE-GspE PulE/GspE Th 88.8 0.81 1.8E-05 49.5 6.2 55 282-342 64-119 (264)
448 TIGR02858 spore_III_AA stage I 88.8 2.5 5.4E-05 46.0 9.9 17 304-320 112-128 (270)
449 TIGR02238 recomb_DMC1 meiotic 88.7 1.8 3.9E-05 48.1 9.0 50 289-340 84-139 (313)
450 PF12846 AAA_10: AAA-like doma 88.7 0.57 1.2E-05 50.4 5.0 42 304-345 2-43 (304)
451 COG0468 RecA RecA/RadA recombi 88.6 1.4 3E-05 48.1 7.8 44 303-346 60-103 (279)
452 PRK14086 dnaA chromosomal repl 88.5 1.8 3.8E-05 52.2 9.2 43 304-347 315-359 (617)
453 PF00437 T2SE: Type II/IV secr 88.4 0.54 1.2E-05 50.6 4.6 41 303-344 127-168 (270)
454 PRK13531 regulatory ATPase Rav 88.4 1.7 3.7E-05 50.8 8.8 35 286-323 25-59 (498)
455 PRK01172 ski2-like helicase; P 88.3 1.8 3.9E-05 53.1 9.6 89 327-417 232-340 (674)
456 COG0542 clpA ATP-binding subun 88.3 2.4 5.1E-05 52.3 10.3 103 285-417 495-605 (786)
457 COG2812 DnaX DNA polymerase II 88.3 1.5 3.3E-05 51.6 8.4 39 403-441 117-157 (515)
458 TIGR02974 phageshock_pspF psp 88.3 1.8 3.9E-05 48.4 8.7 19 302-320 21-39 (329)
459 KOG0332 ATP-dependent RNA heli 88.3 1.2 2.6E-05 49.8 6.9 73 332-410 331-403 (477)
460 PRK04195 replication factor C 88.1 4.1 8.9E-05 48.0 12.0 51 286-339 22-72 (482)
461 PRK10865 protein disaggregatio 88.0 2.4 5.3E-05 53.4 10.5 39 287-326 184-222 (857)
462 KOG0733 Nuclear AAA ATPase (VC 87.9 2.9 6.3E-05 49.6 10.1 20 301-320 221-240 (802)
463 PF00271 Helicase_C: Helicase 87.9 0.99 2.1E-05 38.6 5.0 55 360-415 7-61 (78)
464 PRK14721 flhF flagellar biosyn 87.6 6.4 0.00014 45.5 12.7 123 303-453 191-323 (420)
465 PRK10436 hypothetical protein; 87.6 1 2.2E-05 52.6 6.5 51 282-338 202-253 (462)
466 COG0593 DnaA ATPase involved i 87.6 4.2 9E-05 46.7 11.1 18 303-320 113-130 (408)
467 COG1223 Predicted ATPase (AAA+ 87.3 4.3 9.4E-05 43.6 10.1 42 303-349 151-193 (368)
468 TIGR01243 CDC48 AAA family ATP 87.1 4.3 9.4E-05 50.4 11.9 23 301-323 485-507 (733)
469 TIGR01420 pilT_fam pilus retra 87.1 1.8 3.9E-05 48.7 7.8 40 303-343 122-163 (343)
470 CHL00095 clpC Clp protease ATP 87.0 4.7 0.0001 50.7 12.3 27 301-327 198-224 (821)
471 PRK07414 cob(I)yrinic acid a,c 86.7 2.1 4.6E-05 43.6 7.2 37 306-342 24-60 (178)
472 cd01123 Rad51_DMC1_radA Rad51_ 86.6 1.7 3.8E-05 45.4 7.1 39 301-339 17-61 (235)
473 PF03969 AFG1_ATPase: AFG1-lik 86.4 10 0.00022 43.1 13.4 19 301-319 60-78 (362)
474 PRK09751 putative ATP-dependen 86.3 2.8 6E-05 55.4 9.8 90 324-414 237-354 (1490)
475 TIGR03880 KaiC_arch_3 KaiC dom 86.1 0.96 2.1E-05 47.3 4.8 52 301-353 14-65 (224)
476 TIGR03881 KaiC_arch_4 KaiC dom 86.1 1 2.2E-05 47.2 4.9 49 301-350 18-66 (229)
477 COG2109 BtuR ATP:corrinoid ade 85.8 5.9 0.00013 40.7 9.8 35 306-340 31-65 (198)
478 PF02606 LpxK: Tetraacyldisacc 85.8 27 0.00059 39.0 16.2 149 385-552 127-287 (326)
479 KOG0991 Replication factor C, 85.7 0.69 1.5E-05 48.7 3.3 24 304-327 49-72 (333)
480 TIGR01243 CDC48 AAA family ATP 85.7 9.3 0.0002 47.5 13.8 19 302-320 211-229 (733)
481 COG0467 RAD55 RecA-superfamily 85.7 0.98 2.1E-05 48.5 4.6 52 301-353 21-72 (260)
482 TIGR02538 type_IV_pilB type IV 85.6 1.4 3.1E-05 52.9 6.4 51 282-338 300-351 (564)
483 COG1219 ClpX ATP-dependent pro 85.5 0.56 1.2E-05 51.5 2.5 20 304-323 98-117 (408)
484 TIGR03345 VI_ClpV1 type VI sec 85.3 5.9 0.00013 50.0 11.9 38 286-324 192-229 (852)
485 TIGR02688 conserved hypothetic 85.3 3.5 7.6E-05 47.5 8.9 68 264-331 169-238 (449)
486 PRK06835 DNA replication prote 85.2 1.1 2.5E-05 50.0 5.0 44 303-347 183-226 (329)
487 PRK00254 ski2-like helicase; P 85.2 3.2 6.9E-05 51.4 9.4 90 322-412 229-346 (720)
488 PRK14712 conjugal transfer nic 85.2 6.3 0.00014 52.4 12.3 118 282-437 282-402 (1623)
489 PRK09361 radB DNA repair and r 85.2 1.2 2.6E-05 46.6 4.9 40 301-340 21-60 (225)
490 PRK04301 radA DNA repair and r 85.2 2.8 6E-05 46.5 8.0 39 301-339 100-144 (317)
491 KOG2170 ATPase of the AAA+ sup 85.0 16 0.00035 40.3 13.2 64 267-331 73-138 (344)
492 TIGR01970 DEAH_box_HrpB ATP-de 85.0 2.5 5.4E-05 52.9 8.3 77 331-410 209-285 (819)
493 PLN03137 ATP-dependent DNA hel 84.9 3.3 7.1E-05 53.0 9.2 75 331-411 680-754 (1195)
494 PRK06067 flagellar accessory p 84.7 1.3 2.9E-05 46.6 5.1 52 301-353 23-74 (234)
495 COG1201 Lhr Lhr-like helicases 84.7 5.7 0.00012 49.4 11.0 104 302-410 219-327 (814)
496 cd01128 rho_factor Transcripti 84.5 3.4 7.3E-05 44.4 8.0 27 301-328 14-40 (249)
497 PF02534 T4SS-DNA_transf: Type 84.5 1.1 2.4E-05 52.3 4.7 58 304-368 45-102 (469)
498 cd00984 DnaB_C DnaB helicase C 84.3 1.1 2.5E-05 47.1 4.3 39 301-339 11-50 (242)
499 TIGR02533 type_II_gspE general 84.3 1.5 3.3E-05 51.6 5.8 51 282-338 226-277 (486)
500 PRK15429 formate hydrogenlyase 84.3 4.6 0.0001 49.7 10.2 20 302-321 398-417 (686)
No 1
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=6.2e-138 Score=1229.38 Aligned_cols=697 Identities=40% Similarity=0.666 Sum_probs=634.2
Q ss_pred HHHHHHHHHhhhhhhcCccCCCCCCCCCCCCCCCCCCCcceeeeCCCCCCCCCcccccccccEEEeeEEEeecCCCCCcc
Q 003260 106 IQLVKEQQQKGLQKLKGKKSGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI 185 (835)
Q Consensus 106 ~~~~~~~~~~g~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vvh~~~Gig~~~g~~~~~~~~~~~~~ 185 (835)
..++.|++.+|.+.+++.++++... .-....|+.+|++||||||.+||||+|.||+.... +|.++
T Consensus 436 l~vItE~el~g~r~~~~~~~k~~~~-------------~~~~i~~~~eL~~Gd~VVH~~HGIGrflgl~tl~~--~g~~~ 500 (1139)
T COG1197 436 LAVITESELLGSRVKRRRRRKRRKK-------------NATRIKDLAELKPGDYVVHIDHGIGRFLGLETLEV--GGIER 500 (1139)
T ss_pred EEEEechHhhhhHhhhhhhhhhhhc-------------chhhhcchhhCCCCCeEEeccCCceeeeeeEEEec--CCCcc
Confidence 5678899999999887633222111 11223488899999999999999999999995432 37899
Q ss_pred ceEEEEEcCCC-cccChhhHhHHHhhhcCCCCCCchHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 003260 186 EYVFIEYADGM-AKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264 (835)
Q Consensus 186 ~~~~~~y~~~~-~~~~~~~~~~~~~~y~~~~~~~~~~~l~~l~~~~~w~~~k~~~~~~~~~~~~~l~~l~~~r~~~~~~~ 264 (835)
||+.|+|++++ +++|++|+ ++++||.+.++. .|+|+|||+ +.|+++|.|++++++++|.+|+++|++|+...|++
T Consensus 501 dyL~l~Ya~~dkLyVPVeql-~lisrY~g~~~~--~p~L~kLG~-~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~a 576 (1139)
T COG1197 501 DYLELEYAGEDKLYVPVEQL-HLISRYVGASDE--APKLHKLGG-GAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFA 576 (1139)
T ss_pred ceEEEEEcCCCeEEEEHHHh-hHHhhccCCCCC--CccccccCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 99999999996 89999996 789999987753 699999995 89999999999999999999999999999999999
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHH
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 343 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~L 343 (835)
|+++. |+.+|++.|||+.||+|..||++|++|| +++++||+|||||+|+|||+||++|+|.++.+|+||+|||||+.|
T Consensus 577 f~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM-~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlL 655 (1139)
T COG1197 577 FPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDM-ESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLL 655 (1139)
T ss_pred CCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHh-ccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHh
Confidence 99888 9999999999999999999999999999 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHH
Q 003260 344 AKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE 423 (835)
Q Consensus 344 A~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e 423 (835)
|+|||++|++||.+|| ++|..++++.+.+++...++.+++|++|||||||.+|++++.|+|+||+||||+||||++|++
T Consensus 656 A~QHy~tFkeRF~~fP-V~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGVk~KE 734 (1139)
T COG1197 656 AQQHYETFKERFAGFP-VRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVKHKE 734 (1139)
T ss_pred HHHHHHHHHHHhcCCC-eeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEechhhcCccHHH
Confidence 9999999999999996 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecCcc
Q 003260 424 KIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503 (835)
Q Consensus 424 ~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~~~~~~~~l~~~i~~~l~~ggqvlVf~n~v~ 503 (835)
.|+.++.++++|.|||||+|||++|++.|++|.|+|.+||.+|.||+|++.+++...+.++|.+++.+||||++++|+++
T Consensus 735 kLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~ 814 (1139)
T COG1197 735 KLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVHNRVE 814 (1139)
T ss_pred HHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEecchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHh
Q 003260 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLR 583 (835)
Q Consensus 504 ~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~ 583 (835)
+++.+++.|++++|+++|++.||+|+..+.+.+|.+|.+|+++|||||+|+|+||||||+|++|+.++++||++|+||++
T Consensus 815 ~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLR 894 (1139)
T COG1197 815 SIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLR 894 (1139)
T ss_pred hHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHHHHHHHHH
Q 003260 584 GRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLF 663 (835)
Q Consensus 584 GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dl~irg~g~~lg~~q~g~~~~vg~~~y~~~l~ 663 (835)
|||||+++.||||++|++.+.+++.+.+||++|++++++|+||.+|++||+|||+||+||.+|||+|+.|||++|++||+
T Consensus 895 GRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeIRGaGNlLG~eQSG~I~~VGf~LY~~mLe 974 (1139)
T COG1197 895 GRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASFTELGAGFKLAMHDLEIRGAGNLLGEEQSGHIESVGFDLYMEMLE 974 (1139)
T ss_pred cccCCccceEEEEEeecCccccCHHHHHHHHHHHhhhhcCchHHHHhcchhccccccccCccccCchheecHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccccccccCcceEEeeecCCCCccccccccCCchHHHHHHHhhhhcCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 003260 664 ESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743 (835)
Q Consensus 664 ~ai~~~~~~~~~~~~~g~~~~~l~idp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~dr~G~~p~~~~~l~ 743 (835)
+||+++++..........+.++++++++||++||++...|+++|+|++.+. +.+++.++.+||+||||++|+++++||
T Consensus 975 eAI~~lk~~~e~~~~~~~~eIdL~~~a~iPe~YI~d~~~rl~~YkRi~~~~--s~~el~~i~~EliDRFG~lP~ev~~Ll 1052 (1139)
T COG1197 975 EAIAALKGSLEVLEEEKEVEIDLPVPAFIPEDYIPDDNLRLELYKRLANAE--SEEELEEIKEELIDRFGPLPDEVKNLL 1052 (1139)
T ss_pred HHHHHHhcCCcccccCCCeeEecCCCCcCChhhccCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 999999883222233447899999999999999999999999999999976 557999999999999999999999999
Q ss_pred HHHHHHHHhhhcCccEEEecCcEEEEEecCCHHH-HHHHHHhhcccccccceeeeCCeeEEEEEec-CCcHHHHHHHHHH
Q 003260 744 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKV-FKMMIDSMTSEVHRNSLTFEGDQIKAELLLE-LPREQLLNWIFQC 821 (835)
Q Consensus 744 ~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 821 (835)
.+++||.+|+++||.+|...++.+.+.+..+..+ ...+.+.+.......++ . +..++.+... ...+++++++..+
T Consensus 1053 ~i~~lk~la~~lgI~~i~~~~~~~~i~f~~~~~~~~~~l~~~~~~~~~~~~~--~-~~~~i~~~~~~~~~~~~l~~~~~~ 1129 (1139)
T COG1197 1053 DIAELKLLARKLGIEKIDAGENGVVIEFSKNEQVNPKKLIKLLQKQPLKAKL--K-GDTKLLFIKDLIEPEERLDAVAKL 1129 (1139)
T ss_pred HHHHHHHHHHHcCCeeeccCCceEEEEeccccccCHHHHHHHhhccceeeec--C-CCceEEEecccCCHHHHHHHHHHH
Confidence 9999999999999999999999999887654211 11233333322222222 2 3344444444 4567789999999
Q ss_pred HHHHHhh
Q 003260 822 LAELYAS 828 (835)
Q Consensus 822 ~~~~~~~ 828 (835)
+..|.+.
T Consensus 1130 l~~L~~~ 1136 (1139)
T COG1197 1130 LKALAEL 1136 (1139)
T ss_pred HHHHHhh
Confidence 9888653
No 2
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.5e-109 Score=1022.57 Aligned_cols=693 Identities=33% Similarity=0.594 Sum_probs=601.9
Q ss_pred HHHHHHHHHhhhhhhcCccCCCCCCCCCCCCCCCCCCCcceeeeCCCCCCCCCcccccccccEEEeeEEEeecCCCCCcc
Q 003260 106 IQLVKEQQQKGLQKLKGKKSGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI 185 (835)
Q Consensus 106 ~~~~~~~~~~g~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vvh~~~Gig~~~g~~~~~~~~~~~~~ 185 (835)
..+++|.+.+|.+.++++++++.... .....-+..+|++||||||.+||||+|.|++..... |..+
T Consensus 441 ~~vite~eifg~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~Gd~VVh~~~Gig~~~gi~~~~~~--g~~~ 506 (1147)
T PRK10689 441 LALICESDLLGERVARRRQDSRRTIN------------PDTLIRNLAELHPGQPVVHLEHGVGRYAGMTTLEAG--GIKG 506 (1147)
T ss_pred EEEEEhHHhhCccccccccccccccc------------hhhcccchhhCCCCCEEEecCCCeEEEeeEEEEecC--Ccce
Confidence 55788899999763333231111110 001112567999999999999999999999954332 5789
Q ss_pred ceEEEEEcCCC-cccChhhHhHHHhhhcCCCCCCchHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 003260 186 EYVFIEYADGM-AKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264 (835)
Q Consensus 186 ~~~~~~y~~~~-~~~~~~~~~~~~~~y~~~~~~~~~~~l~~l~~~~~w~~~k~~~~~~~~~~~~~l~~l~~~r~~~~~~~ 264 (835)
||+.|+|++++ +++|++++ ++++||.+.++. .|+|++||+ +.|+++|.|++++++++|.+|+++|++|...++++
T Consensus 507 ~~~~l~y~~~~~l~vPv~~~-~~~~~y~~~~~~--~~~l~~lg~-~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~~~~ 582 (1147)
T PRK10689 507 EYLMLTYANDAKLYVPVSSL-HLISRYAGGAEE--NAPLHKLGG-DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582 (1147)
T ss_pred eEEEEEECCCCeEEeeHHHh-CcEeeecCCCCC--CCccccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 99999999886 78999996 689999986643 689999995 89999999999999999999999999999999999
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHH
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 343 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~L 343 (835)
|+++. ++.+|.+.|||+|||+|.+||+.++++| +++.+||+|+|||||||||++|+.+++.++.++++|+||+||++|
T Consensus 583 ~~~~~~~~~~~~~~~~~~~T~~Q~~aI~~il~d~-~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eL 661 (1147)
T PRK10689 583 FKHDREQYQLFCDSFPFETTPDQAQAINAVLSDM-CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLL 661 (1147)
T ss_pred CCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh-hcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHH
Confidence 98877 9999999999999999999999999998 467889999999999999999999999988899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHH
Q 003260 344 AKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE 423 (835)
Q Consensus 344 A~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e 423 (835)
|.|+++.|.++|+.+ ++++.+++++.+..++...+..+.+|.++|+||||+++...+.++++++|||||+|+||+.+.+
T Consensus 662 A~Q~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVIDEahrfG~~~~e 740 (1147)
T PRK10689 662 AQQHYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRFGVRHKE 740 (1147)
T ss_pred HHHHHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEEechhhcchhHHH
Confidence 999999999988887 5899999999999998888888999999999999999988888999999999999999999999
Q ss_pred HHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecCcc
Q 003260 424 KIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503 (835)
Q Consensus 424 ~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~~~~~~~~l~~~i~~~l~~ggqvlVf~n~v~ 503 (835)
.++.++.++++++|||||+|++++++..++++++.+.++|..+.++.+++..+....+..++..++.++++++||||+++
T Consensus 741 ~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~~il~el~r~gqv~vf~n~i~ 820 (1147)
T PRK10689 741 RIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVE 820 (1147)
T ss_pred HHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 99888899999999999999999999999999999999988888888887776666677888888999999999999999
Q ss_pred ChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHh
Q 003260 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLR 583 (835)
Q Consensus 504 ~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~ 583 (835)
.++.+++.|.+.+|++++.++||+|++.+|++++.+|++|+++|||||+++++|||+|++++||+.++++|++++|+||+
T Consensus 821 ~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~ 900 (1147)
T PRK10689 821 NIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 (1147)
T ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHHHHHHHHH
Q 003260 584 GRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLF 663 (835)
Q Consensus 584 GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dl~irg~g~~lg~~q~g~~~~vg~~~y~~~l~ 663 (835)
|||||.|+.|+||+++++...+++.+.+||.+|++++++|+||.+|++||+|||+||+||.+|||++..+||++|++||+
T Consensus 901 GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~rg~g~~~g~~q~g~~~~~g~~~y~~~l~ 980 (1147)
T PRK10689 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGQMETIGFSLYMELLE 980 (1147)
T ss_pred hccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCccCCCCccCCCccccCHHHHHHHHH
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccccccc-c--CcceEEeeecCCCCccccccccCCchHHHHHHHhhhhcCHHHHHHHHHHHHHhcCCChHHHH
Q 003260 664 ESLSKVDEHCVISV-P--YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740 (835)
Q Consensus 664 ~ai~~~~~~~~~~~-~--~g~~~~~l~idp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~dr~G~~p~~~~ 740 (835)
+|+.++++...... + ...+.+++++++++|+.||++...|+++|++++.+. +.++++++.+||.||||++|.+++
T Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~yi~~~~~r~~~y~~~~~~~--~~~~~~~~~~e~~drfg~~p~~~~ 1058 (1147)
T PRK10689 981 NAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAK--NENELEEIKVELIDRFGLLPDPAR 1058 (1147)
T ss_pred HHHHHHhcCCCcccccccCCceEEecCCCccCChhhcCChHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHCCCCcHHHH
Confidence 99998884321111 1 135789999999999999999999999999999976 457899999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCccEEEecCcEEEEEecCC-----HHHHHHHHHhhcccccccceeeeCCeeEEEEEecCC-cHHH
Q 003260 741 ILLKKLYVRRMAADIGITKIYASGKMVGMKTNMN-----KKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELP-REQL 814 (835)
Q Consensus 741 ~l~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 814 (835)
+||.+++||++|+++||.+|....+...+.+... ..++.++ .. ....+.+.+. ..+.+....+ ..+.
T Consensus 1059 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~-~~~~~~~~~~~~~~~ 1131 (1147)
T PRK10689 1059 NLLDIARLRQQAQKLGIRKLEGNEKGGFIEFAEKNHVDPAWLIGLL----QK--QPQHYRLDGP-TRLKFIQDLSERKTR 1131 (1147)
T ss_pred HHHHHHHHHHHHHHCCCcEEEecCCceEEEEcCCCCcCHHHHHHHH----hh--cCcEEEECCC-ceEEEecCCCCHHHH
Confidence 9999999999999999999985433334443321 2223322 21 2334444432 2333333444 4456
Q ss_pred HHHHHHHHHHHHh
Q 003260 815 LNWIFQCLAELYA 827 (835)
Q Consensus 815 ~~~~~~~~~~~~~ 827 (835)
++++.++|..+.+
T Consensus 1132 ~~~~~~~l~~l~~ 1144 (1147)
T PRK10689 1132 IEWVRQFMRELEE 1144 (1147)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887764
No 3
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.1e-109 Score=1004.29 Aligned_cols=630 Identities=41% Similarity=0.698 Sum_probs=575.1
Q ss_pred HHHHHHHHHhhhhhhcCccCCCCCCCCCCCCCCCCCCCcceeeeCCCCCCCCCcccccccccEEEeeEEEeecCCCCCcc
Q 003260 106 IQLVKEQQQKGLQKLKGKKSGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI 185 (835)
Q Consensus 106 ~~~~~~~~~~g~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vvh~~~Gig~~~g~~~~~~~~~~~~~ 185 (835)
..+++|.+.+|.+.++++++++. . +.. . .++.+|++||||||.+||||+|.|++..... |..+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~--~-~~~~~l~~Gd~VVh~~~Gig~~~gi~~~~~~--g~~~ 357 (926)
T TIGR00580 295 LAVITESELFGSRVLRRPKKSRL--K----------SKP--I-ESLNELNPGDYVVHLDHGIGRFLGLETLEVG--GIER 357 (926)
T ss_pred EEEEehHHhhchhhcchhhhccc--c----------ccc--c-CchhhCCCCCEEEecCCCeEEEeeEEEEecC--Ccce
Confidence 45677888888763333222221 1 001 1 2567999999999999999999999843322 5789
Q ss_pred ceEEEEEcCCC-cccChhhHhHHHhhhcCCCCCCchHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 003260 186 EYVFIEYADGM-AKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264 (835)
Q Consensus 186 ~~~~~~y~~~~-~~~~~~~~~~~~~~y~~~~~~~~~~~l~~l~~~~~w~~~k~~~~~~~~~~~~~l~~l~~~r~~~~~~~ 264 (835)
||+.|+|++++ +++|+++. ++++||.+.++ ..|+|++||+ +.|+++|.|++++++++|.+|+++|++|....+++
T Consensus 358 dy~~l~y~~~~~l~vPv~~~-~~~~~y~~~~~--~~~~l~~lg~-~~w~~~k~~~~~~~~~~a~~l~~l~a~r~~~~~~~ 433 (926)
T TIGR00580 358 DYLVLEYAGEDKLYVPVEQL-HLISRYVGGSG--KNPALDKLGG-KSWEKTKAKVKKSVREIAAKLIELYAKRKAIKGHA 433 (926)
T ss_pred eEEEEEECCCCEEEEEHHHc-CceeeecCCCC--CCCcccccCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999987 88999997 68999998654 3699999995 99999999999999999999999999999999999
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHH
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 343 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~L 343 (835)
++++. ++..|.+.|||+|||+|.+||+.++++|. ++++||+|+|||||||||++|+++++.++.++++++||+||++|
T Consensus 434 ~~~~~~~~~~~~~~~~f~~T~~Q~~aI~~I~~d~~-~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~L 512 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPFEETPDQLKAIEEIKADME-SPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLL 512 (926)
T ss_pred CCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhc-ccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHH
Confidence 98876 99999999999999999999999999994 67889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHH
Q 003260 344 AKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE 423 (835)
Q Consensus 344 A~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e 423 (835)
|.|++++|+++|+.+ ++++..++|+.+..++...+..+.+|+++||||||.++.+.+.|+++++|||||+|+||+.+++
T Consensus 513 A~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVIDEahrfgv~~~~ 591 (926)
T TIGR00580 513 AQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIIDEEQRFGVKQKE 591 (926)
T ss_pred HHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEeecccccchhHHH
Confidence 999999999988887 5999999999998888899999999999999999999988889999999999999999999999
Q ss_pred HHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecCcc
Q 003260 424 KIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503 (835)
Q Consensus 424 ~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~~~~~~~~l~~~i~~~l~~ggqvlVf~n~v~ 503 (835)
.+..+..++++|+|||||+|+++.+.+.+..+++++.++|..+.++.+++..++...+..++.+++.+++|++||||+++
T Consensus 592 ~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~~~i~~~i~~el~~g~qv~if~n~i~ 671 (926)
T TIGR00580 592 KLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDPELVREAIRRELLRGGQVFYVHNRIE 671 (926)
T ss_pred HHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCHHHHHHHHHHHHHcCCeEEEEECCcH
Confidence 99998889999999999999999999999999999999999999999988877777778888888999999999999999
Q ss_pred ChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHh
Q 003260 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLR 583 (835)
Q Consensus 504 ~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~ 583 (835)
+++.+++.|++.+|++++..+||+|++.+|+++|++|++|+++|||||+++++|||+|++++||++++++|++++|+||+
T Consensus 672 ~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~ 751 (926)
T TIGR00580 672 SIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLR 751 (926)
T ss_pred HHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHHHHHHHHH
Q 003260 584 GRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLF 663 (835)
Q Consensus 584 GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dl~irg~g~~lg~~q~g~~~~vg~~~y~~~l~ 663 (835)
||+||.|+.|+||+++++...+++.+.+||.+|++++++|+||.+|++||+|||+||+||.+|||++..+||++|++||+
T Consensus 752 GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~~~~g~gf~ia~~Dl~~Rg~G~~lG~~QsG~~~~~~~~~~~~~l~ 831 (926)
T TIGR00580 752 GRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEFSELGAGFKIALHDLEIRGAGNLLGEEQSGHIESIGFDLYMELLE 831 (926)
T ss_pred cCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCcCCCCCcccCchhhccHHHHHHHHH
Confidence 99999999999999999887788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccccccccCcceEEeeecCCCCccccccccCCchHHHHHHHhhhhcCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 003260 664 ESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743 (835)
Q Consensus 664 ~ai~~~~~~~~~~~~~g~~~~~l~idp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~dr~G~~p~~~~~l~ 743 (835)
+|+.+++++.... ....+.+++++++++|+.||++...|+++|++++.+. +.++++++.+||.||||++|.++++||
T Consensus 832 ~a~~~~~~~~~~~-~~~~~~~~~~~~~~ip~~yi~~~~~r~~~y~~~~~~~--~~~~~~~~~~e~~drfg~~p~~~~~l~ 908 (926)
T TIGR00580 832 EAIEELKGGKPPK-LEEETDIELPYSAFIPDDYIADDSLRLEFYKRIASAE--TEEELEKIRDELIDRFGPLPEEARTLL 908 (926)
T ss_pred HHHHHHhcCCCCC-CCCceEEecCCCCcCChhhcCChHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 9999988322111 2236789999999999999999999999999999976 557899999999999999999999999
Q ss_pred HHHHHHHHhhhcCccEEE
Q 003260 744 KKLYVRRMAADIGITKIY 761 (835)
Q Consensus 744 ~~~~~~~~~~~~g~~~i~ 761 (835)
.+++||.+|+++||.+|.
T Consensus 909 ~~~~~~~~~~~~~~~~~~ 926 (926)
T TIGR00580 909 DVARLKLLARKLGIRKLK 926 (926)
T ss_pred HHHHHHHHHHHcCCeeeC
Confidence 999999999999999873
No 4
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.3e-70 Score=625.64 Aligned_cols=425 Identities=36% Similarity=0.602 Sum_probs=388.8
Q ss_pred hHHHhccCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---ccCCCCCCCCh-HHHHHHHhCCCCCCHhHHHHHHHHH
Q 003260 220 PRTLSKLSDTTAWERR-KTKGKVAIQKMVVDLMELYLHRL---KQKRPPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVE 294 (835)
Q Consensus 220 ~~~l~~l~~~~~w~~~-k~~~~~~~~~~~~~l~~l~~~r~---~~~~~~~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il 294 (835)
...|..+|.+.+-... ..+.+..++|...-.+.+...|. ...+.+++.+. +.+.|.+..||+||..|++++.+|.
T Consensus 196 ~~al~~lH~P~~~~~~~~~~rRL~f~Ell~~ql~l~~~r~~~~~~~~~~~~~~~~l~~~~~~~LPF~LT~aQ~~vi~EI~ 275 (677)
T COG1200 196 DEALRTLHFPKDEEDLKRARRRLAFEELLALQLSLLLRRAKRQKRSGIPLPANGELLAKFLAALPFKLTNAQKRVIKEIL 275 (677)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 4577788887665443 34556777777654444444443 34566677666 8999999999999999999999999
Q ss_pred HhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHH
Q 003260 295 RDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAE 374 (835)
Q Consensus 295 ~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e 374 (835)
.|| .++.+|++|++||+|||||.||+++++.++.+|.|++.++||-.||.|||+.+.++|..+ |++|+.++|....+.
T Consensus 276 ~Dl-~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~ 353 (677)
T COG1200 276 ADL-ASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPL-GIRVALLTGSLKGKA 353 (677)
T ss_pred hhh-cCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhc-CCeEEEeecccchhH
Confidence 999 468899999999999999999999999999999999999999999999999999999888 799999999999999
Q ss_pred HHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhhhcC-CceEEEeecCCChhhHHHHHhcC
Q 003260 375 KEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKI-SVDVLTLSATPIPRTLYLALTGF 453 (835)
Q Consensus 375 ~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l~~-~~~vL~lSATp~p~tl~~~~~g~ 453 (835)
++..+..+.+|+++||||||.++++.+.|++++++||||.||||+.|+..+..... .+++|.|||||+|||+.+...+.
T Consensus 354 r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQHRFGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgD 433 (677)
T COG1200 354 RKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQHRFGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGD 433 (677)
T ss_pred HHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEEeccccccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999988 79999999999999999999999
Q ss_pred CCcceecCCCCCccceeEEecc-cCHHHHHHHHHHHHhcCCeEEEEecCccC--------hHHHHHHHHhhCCCCeEEEE
Q 003260 454 RDASLISTPPPERLPIKTHLSA-FSKEKVISAIKYELDRGGQVFYVLPRIKG--------LEEPMDFLQQAFPGVDIAIA 524 (835)
Q Consensus 454 ~d~s~I~~~p~~r~~v~~~~~~-~~~~~l~~~i~~~l~~ggqvlVf~n~v~~--------~e~l~~~L~~~~p~~~v~~l 524 (835)
.|.|+|..-|..|.|+.|++.. ...+.+++.+..++..|.|++|+||.+++ ++.+++.|+..+|++++..+
T Consensus 434 ldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~ 513 (677)
T COG1200 434 LDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLV 513 (677)
T ss_pred ccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEE
Confidence 9999999999999999998876 45678999999999999999999999875 55678889988999999999
Q ss_pred eCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003260 525 HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 525 hg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
||+|++.+++++|++|++|+++|||||+++|.|||+||++.+|+.++.+||++|++|.+|||||++.+++|++++.+..
T Consensus 514 HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~- 592 (677)
T COG1200 514 HGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL- 592 (677)
T ss_pred ecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998773
Q ss_pred CCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcc
Q 003260 605 LSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVG 651 (835)
Q Consensus 605 ~~~~a~~rl~~i~~~~~l~sg~~la~~dl~irg~g~~lg~~q~g~~~ 651 (835)
++.+.+|+..+++++ +||.||++||++||.|++||..|||.++
T Consensus 593 -~~~a~~RL~im~~t~---DGF~IAE~DLklRGpGe~lG~rQSG~~~ 635 (677)
T COG1200 593 -SEVAKQRLKIMRETT---DGFVIAEEDLKLRGPGELLGTRQSGLPE 635 (677)
T ss_pred -ChhHHHHHHHHHhcC---CcceehhhhHhccCCccccCCcccCCcc
Confidence 488899999999887 5999999999999999999999999775
No 5
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=4.1e-60 Score=567.15 Aligned_cols=425 Identities=36% Similarity=0.603 Sum_probs=369.1
Q ss_pred hHHHhccCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---ccCCCCCCCC-hHHHHHHHhCCCCCCHhHHHHHHHHH
Q 003260 220 PRTLSKLSDTTAWERR-KTKGKVAIQKMVVDLMELYLHRL---KQKRPPYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVE 294 (835)
Q Consensus 220 ~~~l~~l~~~~~w~~~-k~~~~~~~~~~~~~l~~l~~~r~---~~~~~~~~~~-~l~~~~~~~f~~~ptp~Q~~AI~~il 294 (835)
...|..+|.|.+.... ..+.+.+++|...-.+.+...|. ...+.+++.+ .+.+.|.+.+||+||++|.+|++.+.
T Consensus 195 ~~al~~iH~P~~~~~~~~a~~rl~~~El~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~lt~~Q~~ai~~I~ 274 (681)
T PRK10917 195 AEALRAIHFPPSDEDLHPARRRLKFEELFALQLSLLLLRAGRRSKKAGPLPYDGELLKKFLASLPFELTGAQKRVVAEIL 274 (681)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 3578888988776553 34666777877643333322222 2233444333 48899999999999999999999999
Q ss_pred HhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHH
Q 003260 295 RDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAE 374 (835)
Q Consensus 295 ~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e 374 (835)
+++. ++.+|++|++||||||||++|+.+++..+.+|.+++||+||++||.|+++.+++.+..+ |+++++++|+.+..+
T Consensus 275 ~d~~-~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~ 352 (681)
T PRK10917 275 ADLA-SPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPL-GIRVALLTGSLKGKE 352 (681)
T ss_pred Hhhh-ccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhc-CcEEEEEcCCCCHHH
Confidence 9984 56789999999999999999999999999999999999999999999999999977665 799999999999999
Q ss_pred HHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCC
Q 003260 375 KEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 454 (835)
Q Consensus 375 ~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~ 454 (835)
+...+..+.+|+++|+||||+++.+.+.|+++++|||||+|+||+.++..+.......++|+|||||+|+++.+...+..
T Consensus 353 r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hrfg~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~ 432 (681)
T PRK10917 353 RREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRFGVEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDL 432 (681)
T ss_pred HHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhhhhHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCC
Confidence 99999999999999999999999988889999999999999999999988887777799999999999999998888888
Q ss_pred CcceecCCCCCccceeEEecccC-HHHHHHHHHHHHhcCCeEEEEecCccC--------hHHHHHHHHhhCCCCeEEEEe
Q 003260 455 DASLISTPPPERLPIKTHLSAFS-KEKVISAIKYELDRGGQVFYVLPRIKG--------LEEPMDFLQQAFPGVDIAIAH 525 (835)
Q Consensus 455 d~s~I~~~p~~r~~v~~~~~~~~-~~~l~~~i~~~l~~ggqvlVf~n~v~~--------~e~l~~~L~~~~p~~~v~~lh 525 (835)
+.+.+...|..+.++.+.+.... .+.+.+.+...+..+.|++||||.+++ ++.+++.|...++++++..+|
T Consensus 433 ~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lH 512 (681)
T PRK10917 433 DVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLH 512 (681)
T ss_pred ceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEe
Confidence 88888877777778877665443 456778888888899999999997654 456788899888889999999
Q ss_pred CCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCCcC
Q 003260 526 GQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLL 605 (835)
Q Consensus 526 g~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~ 605 (835)
|+|++.+|+.++++|++|+++|||||+++++|||+|++++||++++|+|++++|+||+||+||.|..|+||++++.. .
T Consensus 513 G~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~--~ 590 (681)
T PRK10917 513 GRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDP--L 590 (681)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999643 3
Q ss_pred CHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcc
Q 003260 606 SDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVG 651 (835)
Q Consensus 606 ~~~a~~rl~~i~~~~~l~sg~~la~~dl~irg~g~~lg~~q~g~~~ 651 (835)
++.+.+|+..++... +||.+++.|+.+||.|+++|..|||.++
T Consensus 591 ~~~~~~rl~~~~~~~---dgf~iae~dl~~rg~g~~~g~~q~g~~~ 633 (681)
T PRK10917 591 SETARERLKIMRETN---DGFVIAEKDLELRGPGELLGTRQSGLPE 633 (681)
T ss_pred ChhHHHHHHHHHHhc---chHHHHHHhHhhCCCccccCceecCCCC
Confidence 567889999988765 5999999999999999999999999654
No 6
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.6e-59 Score=558.42 Aligned_cols=424 Identities=34% Similarity=0.598 Sum_probs=363.6
Q ss_pred HHHhccCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHH----ccCCCCCCCC-hHHHHHHHhCCCCCCHhHHHHHHHHH
Q 003260 221 RTLSKLSDTTAWERR-KTKGKVAIQKMVVDLMELYLHRL----KQKRPPYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVE 294 (835)
Q Consensus 221 ~~l~~l~~~~~w~~~-k~~~~~~~~~~~~~l~~l~~~r~----~~~~~~~~~~-~l~~~~~~~f~~~ptp~Q~~AI~~il 294 (835)
..|..+|.|..++.. ..+.+..++|...-.+.+...|. ...+.++..+ .+..+|.+.+||+||+.|.+|+++|+
T Consensus 169 ~al~~iH~P~~~~~~~~a~~rl~~~E~~~~ql~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpf~lt~~Q~~ai~~I~ 248 (630)
T TIGR00643 169 DALRAIHFPKTLSLLELARRRLIFDEFFYLQLAMLARRLGEKQQFSAPPANPSEELLTKFLASLPFKLTRAQKRVVKEIL 248 (630)
T ss_pred HHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 477888887766543 34556677776643333322222 2234445444 47888999999999999999999999
Q ss_pred HhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHH
Q 003260 295 RDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAE 374 (835)
Q Consensus 295 ~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e 374 (835)
.++. .+.+|++|++||||||||++|+++++..+..|.+++|++||++||.|+++.+++.+..+ |+++.+++|+.+..+
T Consensus 249 ~~~~-~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~-gi~v~lltg~~~~~~ 326 (630)
T TIGR00643 249 QDLK-SDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPL-GIEVALLTGSLKGKR 326 (630)
T ss_pred HHhc-cCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhccc-CcEEEEEecCCCHHH
Confidence 9984 56789999999999999999999999999999999999999999999999999877766 799999999999999
Q ss_pred HHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhhhcC---CceEEEeecCCChhhHHHHHh
Q 003260 375 KEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKI---SVDVLTLSATPIPRTLYLALT 451 (835)
Q Consensus 375 ~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l~~---~~~vL~lSATp~p~tl~~~~~ 451 (835)
+...+..+.+|+++|+||||+++.+.+.+.++++|||||+|+||+.++..+..... ..++|+|||||+|+++.+...
T Consensus 327 r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVIDEaH~fg~~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~ 406 (630)
T TIGR00643 327 RKELLETIASGQIHLVVGTHALIQEKVEFKRLALVIIDEQHRFGVEQRKKLREKGQGGFTPHVLVMSATPIPRTLALTVY 406 (630)
T ss_pred HHHHHHHHhCCCCCEEEecHHHHhccccccccceEEEechhhccHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhc
Confidence 88999999999999999999999988899999999999999999998888776654 789999999999999988887
Q ss_pred cCCCcceecCCCCCccceeEEecccC-HHHHHHHHHHHHhcCCeEEEEecCcc--------ChHHHHHHHHhhCCCCeEE
Q 003260 452 GFRDASLISTPPPERLPIKTHLSAFS-KEKVISAIKYELDRGGQVFYVLPRIK--------GLEEPMDFLQQAFPGVDIA 522 (835)
Q Consensus 452 g~~d~s~I~~~p~~r~~v~~~~~~~~-~~~l~~~i~~~l~~ggqvlVf~n~v~--------~~e~l~~~L~~~~p~~~v~ 522 (835)
+..+.+.+...|..+.++.+.+.... .+.+...+...+..+.+++|||+.++ .++.+++.|.+.++++++.
T Consensus 407 ~~l~~~~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~ 486 (630)
T TIGR00643 407 GDLDTSIIDELPPGRKPITTVLIKHDEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVG 486 (630)
T ss_pred CCcceeeeccCCCCCCceEEEEeCcchHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEE
Confidence 77777777777777778877665433 35677778888888999999999874 3567788888888899999
Q ss_pred EEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCC
Q 003260 523 IAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 523 ~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
++||+|++.+|+.++++|++|+.+|||||+++++|||+|++++||++++++|++++|+||+||+||.|+.|+|++++...
T Consensus 487 ~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~ 566 (630)
T TIGR00643 487 LLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNP 566 (630)
T ss_pred EEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999433
Q ss_pred CcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcc
Q 003260 603 SLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVG 651 (835)
Q Consensus 603 ~~~~~~a~~rl~~i~~~~~l~sg~~la~~dl~irg~g~~lg~~q~g~~~ 651 (835)
.++.+.+|+..+..+. +||.+++.||++||.|++||..|||.++
T Consensus 567 --~~~~~~~rl~~~~~~~---dgf~iae~dl~~Rg~g~~~g~~QsG~~~ 610 (630)
T TIGR00643 567 --KSESAKKRLRVMADTL---DGFVIAEEDLELRGPGDLLGTKQSGYPE 610 (630)
T ss_pred --CCHHHHHHHHHHHhhc---ccHHHHHHHHhcCCCcccCCCcccCCCc
Confidence 2567788888887765 5999999999999999999999999654
No 7
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=5e-53 Score=461.87 Aligned_cols=472 Identities=23% Similarity=0.277 Sum_probs=363.0
Q ss_pred HHHHHHHHHHHHh-hhhhhcCccCCCCCCCCCCCCCCCCCCCcceeeeCCCCCCCCCccc-----c--cccccEEEeeEE
Q 003260 103 DKYIQLVKEQQQK-GLQKLKGKKSGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVV-----H--KKVGIGKFVGIK 174 (835)
Q Consensus 103 ~~~~~~~~~~~~~-g~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vv-----h--~~~Gig~~~g~~ 174 (835)
++-|++.+-+++| |..+-|+||..+..++ +|+|+||..+++..||++ | ..||.|..+|++
T Consensus 96 ~~~K~~~ai~~rylg~~k~kkkk~r~~~~~------------kf~fdWda~edT~~d~~~l~~~~~~i~~fgrG~~ag~d 163 (673)
T KOG0333|consen 96 DDEKEVRAIKERYLGEVKPKKKKGRRLNDK------------KFVFDWDASEDTSNDYNPLYSSRHDIQLFGRGFVAGID 163 (673)
T ss_pred hHHHHHHHHHHHHhcccCcccccccccccc------------ceEEeecccccccccchhhhcCcccchhhccccccccc
Confidence 6778888899998 6666566666666554 999999999999999999 4 458999999998
Q ss_pred EeecCCCCCccceEEEEEcCCCcccChh----hHhHHHhhhcCCCCCCchHHHhccCCCcHHHHHHHHHHHHHHHHHHHH
Q 003260 175 FDVQKDSTVPIEYVFIEYADGMAKLPVK----QASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDL 250 (835)
Q Consensus 175 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~----~~~~~~~~y~~~~~~~~~~~l~~l~~~~~w~~~k~~~~~~~~~~~~~l 250 (835)
...+.. .... |.+.++..-++ |...++++-.. +.....-. ..+|..+...++...+|.. +
T Consensus 164 ~~~qkk--~~s~-----~~~~~e~r~t~~~ke~~~~~~qk~~k------~~~k~~~D-drhW~~k~l~Em~~rdwri--~ 227 (673)
T KOG0333|consen 164 VKEQKK--EKSK-----YGEMMEKRRTEDEKEQEEELLQKVCK------KEAKSGWD-DRHWSEKVLAEMTERDWRI--F 227 (673)
T ss_pred hHHHHh--hhhh-----hhhHhhhhcchhhhhhHHHHHHHhhh------hhhhcccc-ccchhhhhHHhcCCcccee--e
Confidence 544421 1111 33333332222 22223333211 11222222 3678888777777777776 7
Q ss_pred HHHHHHHHccCCCCCCC---------ChHHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHH
Q 003260 251 MELYLHRLKQKRPPYPK---------NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 251 ~~l~~~r~~~~~~~~~~---------~~l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val 321 (835)
.+.|+...+....+.|. ..+++.+...++..|||+|.+||+..++ .+|+|..+.||||||.+|+
T Consensus 228 redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ-------~rD~igvaETgsGktaaf~ 300 (673)
T KOG0333|consen 228 REDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQ-------NRDPIGVAETGSGKTAAFL 300 (673)
T ss_pred ecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhc-------cCCeeeEEeccCCccccch
Confidence 78898887776655442 2367777777788999999999997765 4799999999999999999
Q ss_pred HHHHHHHc------------CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcce
Q 003260 322 RAIFCVVS------------AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389 (835)
Q Consensus 322 ~a~l~~l~------------~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dI 389 (835)
+|++..+. .|+.+++|+|||+||+|+.++-.. |+...|+++..+.|+.+..++.-. +..| |+|
T Consensus 301 ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~k-f~~~lg~r~vsvigg~s~EEq~fq---ls~g-cei 375 (673)
T KOG0333|consen 301 IPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNK-FGKPLGIRTVSVIGGLSFEEQGFQ---LSMG-CEI 375 (673)
T ss_pred hhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHH-hcccccceEEEEecccchhhhhhh---hhcc-cee
Confidence 99887653 378999999999999999999886 777779999999999988775443 4557 999
Q ss_pred eeccHHHhhc-----ccccCCccEEEEcCcccc---chh-h-HHHHhhh-------------------------cCCceE
Q 003260 390 IVGTHSLLGS-----RVVYNNLGLLVVDEEQRF---GVK-Q-KEKIASF-------------------------KISVDV 434 (835)
Q Consensus 390 IVgT~~~L~~-----~l~~~~l~llVIDEaHr~---g~~-~-~e~l~~l-------------------------~~~~~v 434 (835)
+|+||+.|.+ .+.++++.+||+|||++| |+. + ...|..+ +...+.
T Consensus 376 viatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT 455 (673)
T KOG0333|consen 376 VIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQT 455 (673)
T ss_pred eecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEE
Confidence 9999998865 345789999999999985 442 1 1222222 123789
Q ss_pred EEeecCCChhhHHHHHhcCCCcceecCCCCCcc--ceeEEecccCHHHHHHHHHHHHhcC--CeEEEEecCccChHHHHH
Q 003260 435 LTLSATPIPRTLYLALTGFRDASLISTPPPERL--PIKTHLSAFSKEKVISAIKYELDRG--GQVFYVLPRIKGLEEPMD 510 (835)
Q Consensus 435 L~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~--~v~~~~~~~~~~~l~~~i~~~l~~g--gqvlVf~n~v~~~e~l~~ 510 (835)
++||||++|....++..+++++.++......+. .+++.+...+.+.....+...+..+ ..++||+|+++.|+.+++
T Consensus 456 ~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk 535 (673)
T KOG0333|consen 456 VMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAK 535 (673)
T ss_pred EEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHH
Confidence 999999999999999999999998877543322 2344444444444466666666554 689999999999999999
Q ss_pred HHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCC
Q 003260 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 590 (835)
Q Consensus 511 ~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g 590 (835)
.|.+. ++++..+||+-++++|+.+++.|++|..+|||||+++++|||||||.+||+||++. ++.+|.||+||+||+|
T Consensus 536 ~LeK~--g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmak-sieDYtHRIGRTgRAG 612 (673)
T KOG0333|consen 536 ILEKA--GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAK-SIEDYTHRIGRTGRAG 612 (673)
T ss_pred HHhhc--cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhh-hHHHHHHHhccccccc
Confidence 99999 89999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CceEEEEEecCCCcCCHHHHHHHHHHHHH
Q 003260 591 KEAHAYLFYPDKSLLSDQALERLAALEEC 619 (835)
Q Consensus 591 ~~G~ay~l~~~~~~~~~~a~~rl~~i~~~ 619 (835)
+.|.|+.|+++++..-.+.. .++|.+.
T Consensus 613 k~GtaiSflt~~dt~v~ydL--kq~l~es 639 (673)
T KOG0333|consen 613 KSGTAISFLTPADTAVFYDL--KQALRES 639 (673)
T ss_pred cCceeEEEeccchhHHHHHH--HHHHHHh
Confidence 99999999998864322333 3355544
No 8
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-47 Score=425.18 Aligned_cols=339 Identities=22% Similarity=0.272 Sum_probs=277.5
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC---------CCEE
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---------GKQA 334 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~---------g~qv 334 (835)
++.++ ....+...++-.|||+|.++|+.++. ++|++..+.||||||++|++|++..+.. +++|
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~-------GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~v 168 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALS-------GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIV 168 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceecc-------CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeE
Confidence 45555 77888888888999999999999874 6899999999999999999999988765 6899
Q ss_pred EEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEE
Q 003260 335 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLL 409 (835)
Q Consensus 335 lVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~ll 409 (835)
|||+|||+||.|+...+.+ |+.-++++..+++|+.+... +.+.+.+| ++|+|+||++|.+ .+.++++.++
T Consensus 169 LVL~PTRELA~QV~~~~~~-~~~~~~~~~~cvyGG~~~~~---Q~~~l~~g-vdiviaTPGRl~d~le~g~~~l~~v~yl 243 (519)
T KOG0331|consen 169 LVLAPTRELAVQVQAEARE-FGKSLRLRSTCVYGGAPKGP---QLRDLERG-VDVVIATPGRLIDLLEEGSLNLSRVTYL 243 (519)
T ss_pred EEEcCcHHHHHHHHHHHHH-HcCCCCccEEEEeCCCCccH---HHHHHhcC-CcEEEeCChHHHHHHHcCCccccceeEE
Confidence 9999999999999999997 66655788999999887766 55667778 9999999999975 4567889999
Q ss_pred EEcCcccc---chh-h-HHHHhhh-cCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCC----ccceeEEecccC--
Q 003260 410 VVDEEQRF---GVK-Q-KEKIASF-KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE----RLPIKTHLSAFS-- 477 (835)
Q Consensus 410 VIDEaHr~---g~~-~-~e~l~~l-~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~----r~~v~~~~~~~~-- 477 (835)
|+||||+| |+. + ...+.++ ++..|+|++|||.+..+..++..++.++..+.+.... ...+...+...+
T Consensus 244 VLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~ 323 (519)
T KOG0331|consen 244 VLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDET 323 (519)
T ss_pred EeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHH
Confidence 99999996 553 3 3445666 5566899999999999999998888877666554321 122222222222
Q ss_pred -HHHHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcC
Q 003260 478 -KEKVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIV 554 (835)
Q Consensus 478 -~~~l~~~i~~~l--~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~ii 554 (835)
....+..+.... ..++++||||+++..|++++..|+.. ++++..+||+.++.+|+.+++.|++|+..|||||+++
T Consensus 324 ~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~--~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVA 401 (519)
T KOG0331|consen 324 AKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK--GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVA 401 (519)
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc--CcceeeecccccHHHHHHHHHhcccCCcceEEEcccc
Confidence 233344444444 35679999999999999999999997 6889999999999999999999999999999999999
Q ss_pred CcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHh
Q 003260 555 ESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620 (835)
Q Consensus 555 e~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~ 620 (835)
++|+|||+|++||+||+|. +.++|+||+||+||+|+.|.+|+|++..+. ..+..-...+++..
T Consensus 402 aRGLDi~dV~lVInydfP~-~vEdYVHRiGRTGRa~~~G~A~tfft~~~~--~~a~~l~~~l~e~~ 464 (519)
T KOG0331|consen 402 ARGLDVPDVDLVINYDFPN-NVEDYVHRIGRTGRAGKKGTAITFFTSDNA--KLARELIKVLREAG 464 (519)
T ss_pred cccCCCccccEEEeCCCCC-CHHHHHhhcCccccCCCCceEEEEEeHHHH--HHHHHHHHHHHHcc
Confidence 9999999999999999998 999999999999999999999999998753 34444444555543
No 9
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.1e-46 Score=430.53 Aligned_cols=325 Identities=22% Similarity=0.223 Sum_probs=266.7
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC---CCEEEEEccc
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPT 340 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~---g~qvlVLvPt 340 (835)
++.++ +.+.+.+.++.+|||+|.+||+.+++ ++|++++||||||||++|++|++..+.. +.+++|++||
T Consensus 9 l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~-------g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Pt 81 (460)
T PRK11776 9 LPLPPALLANLNELGYTEMTPIQAQSLPAILA-------GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPT 81 (460)
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-------CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCC
Confidence 44555 77888888788999999999999874 5799999999999999999999988754 3489999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCcc
Q 003260 341 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 341 r~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaH 415 (835)
++||.|+++.++.....++++++..++|+.+...+. ..+. ..++|+|+||+.|.+ .+.+.++++||+||||
T Consensus 82 reLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~---~~l~-~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad 157 (460)
T PRK11776 82 RELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQI---DSLE-HGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD 157 (460)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHH---HHhc-CCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH
Confidence 999999999998754445578999999988776543 3334 448999999998864 3457899999999999
Q ss_pred ccc---h--hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCc-cceeEEecccCHHHHHHHHHHHH
Q 003260 416 RFG---V--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER-LPIKTHLSAFSKEKVISAIKYEL 489 (835)
Q Consensus 416 r~g---~--~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r-~~v~~~~~~~~~~~l~~~i~~~l 489 (835)
++. + .....+..++...+++++|||+++....+....+.++..+....... ..+..++.........+.+...+
T Consensus 158 ~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 237 (460)
T PRK11776 158 RMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQRLL 237 (460)
T ss_pred HHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHHH
Confidence 853 2 23445566677889999999998888777777777776665543322 22444444444334445555544
Q ss_pred h--cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEE
Q 003260 490 D--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567 (835)
Q Consensus 490 ~--~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VI 567 (835)
. .+.+++||||+++.++.+++.|... ++.+..+||+|++.+|+.+++.|++|+++|||||+++++|||+|++++||
T Consensus 238 ~~~~~~~~lVF~~t~~~~~~l~~~L~~~--~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI 315 (460)
T PRK11776 238 LHHQPESCVVFCNTKKECQEVADALNAQ--GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI 315 (460)
T ss_pred HhcCCCceEEEECCHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE
Confidence 3 3468999999999999999999988 88999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 568 i~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+++.|. +..+|+||+||+||.|+.|.||+|+++++
T Consensus 316 ~~d~p~-~~~~yiqR~GRtGR~g~~G~ai~l~~~~e 350 (460)
T PRK11776 316 NYELAR-DPEVHVHRIGRTGRAGSKGLALSLVAPEE 350 (460)
T ss_pred EecCCC-CHhHhhhhcccccCCCCcceEEEEEchhH
Confidence 999997 89999999999999999999999998764
No 10
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-44 Score=413.10 Aligned_cols=323 Identities=20% Similarity=0.244 Sum_probs=257.2
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc----------CCCE
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS----------AGKQ 333 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~----------~g~q 333 (835)
++.++ +.+.+.+.+...|||+|.+||+.++. ++|++++||||||||++|++|++..+. .+++
T Consensus 13 ~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~-------g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 13 FALHPQVVEALEKKGFHNCTPIQALALPLTLA-------GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 45555 78888887777999999999999875 579999999999999999999987653 2468
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccE
Q 003260 334 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGL 408 (835)
Q Consensus 334 vlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~l 408 (835)
++||+||++||.|+++.+.. +....++++..++|+.+..... ..+.. .++|+|+||+.|.+ .+.+.++++
T Consensus 86 ~lil~PtreLa~Qi~~~~~~-l~~~~~~~v~~~~gg~~~~~~~---~~l~~-~~~IlV~TP~~l~~~l~~~~~~l~~v~~ 160 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEP-LAQATGLKLGLAYGGDGYDKQL---KVLES-GVDILIGTTGRLIDYAKQNHINLGAIQV 160 (423)
T ss_pred EEEECCcHHHHHHHHHHHHH-HhccCCceEEEEECCCCHHHHH---HHhcC-CCCEEEECHHHHHHHHHcCCcccccccE
Confidence 99999999999999999987 4444589999999987655433 33443 48999999998854 356789999
Q ss_pred EEEcCccccc---h-hhH-HHHhhhc--CCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCc--cceeEEecccCHH
Q 003260 409 LVVDEEQRFG---V-KQK-EKIASFK--ISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LPIKTHLSAFSKE 479 (835)
Q Consensus 409 lVIDEaHr~g---~-~~~-e~l~~l~--~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r--~~v~~~~~~~~~~ 479 (835)
|||||||++. + ... ..+..+. ...+.+++|||++..........+.++..+...+... ..+...+...+..
T Consensus 161 lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~ 240 (423)
T PRK04837 161 VVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNE 240 (423)
T ss_pred EEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHH
Confidence 9999999863 2 112 2233333 2456789999998877777766676666665443322 1222222222333
Q ss_pred HHHHHHHHHHhc--CCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcC
Q 003260 480 KVISAIKYELDR--GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 557 (835)
Q Consensus 480 ~l~~~i~~~l~~--ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~G 557 (835)
.....+...+.. ..+++|||+++..++.+++.|... ++.+..+||+|++.+|..++++|++|+++|||||+++++|
T Consensus 241 ~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~--g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rG 318 (423)
T PRK04837 241 EKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD--GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARG 318 (423)
T ss_pred HHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC--CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcC
Confidence 344445444433 579999999999999999999987 8899999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCC
Q 003260 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 558 IDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
||+|++++||++|.|. +..+|+||+||+||.|+.|.|++|++++
T Consensus 319 iDip~v~~VI~~d~P~-s~~~yiqR~GR~gR~G~~G~ai~~~~~~ 362 (423)
T PRK04837 319 LHIPAVTHVFNYDLPD-DCEDYVHRIGRTGRAGASGHSISLACEE 362 (423)
T ss_pred CCccccCEEEEeCCCC-chhheEeccccccCCCCCeeEEEEeCHH
Confidence 9999999999999997 9999999999999999999999999765
No 11
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.4e-45 Score=386.87 Aligned_cols=322 Identities=20% Similarity=0.208 Sum_probs=265.9
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCC---CEEEEEccc
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG---KQAMVLAPT 340 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g---~qvlVLvPt 340 (835)
....+ +.++.+..+...||++|++|||.++. ++|+|..+.||||||.+|++|++..+... ..++||+||
T Consensus 66 Lgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~-------g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPt 138 (476)
T KOG0330|consen 66 LGVHPELLEACQELGWKKPTKIQSEAIPVALG-------GRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPT 138 (476)
T ss_pred cCcCHHHHHHHHHhCcCCCchhhhhhcchhhC-------CCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCc
Confidence 34455 88888888877999999999999975 68999999999999999999999887653 589999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc------ccCCccEEEEcCc
Q 003260 341 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV------VYNNLGLLVVDEE 414 (835)
Q Consensus 341 r~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l------~~~~l~llVIDEa 414 (835)
|+||.|+.+.|.. ++.-.|+++.++.|+.+...+...+ . .+++|+|+||++|.+.+ .++.+.++|+|||
T Consensus 139 RELA~QI~e~fe~-Lg~~iglr~~~lvGG~~m~~q~~~L---~-kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEA 213 (476)
T KOG0330|consen 139 RELAQQIAEQFEA-LGSGIGLRVAVLVGGMDMMLQANQL---S-KKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEA 213 (476)
T ss_pred HHHHHHHHHHHHH-hccccCeEEEEEecCchHHHHHHHh---h-cCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchH
Confidence 9999999999987 7666699999999998876544333 2 45999999999998654 4678999999999
Q ss_pred ccc-----chhhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCcc-c--eeEEec--ccCHHHHHHH
Q 003260 415 QRF-----GVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL-P--IKTHLS--AFSKEKVISA 484 (835)
Q Consensus 415 Hr~-----g~~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~-~--v~~~~~--~~~~~~l~~~ 484 (835)
|++ +......++.++...+.+++|||++..+..+....+.++..+.++...+. + .++++. ...++..+-.
T Consensus 214 DrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ 293 (476)
T KOG0330|consen 214 DRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVY 293 (476)
T ss_pred HhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHH
Confidence 985 33445667778899999999999988877777666777666655432211 1 122221 1122233333
Q ss_pred HHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCcc
Q 003260 485 IKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564 (835)
Q Consensus 485 i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~ 564 (835)
+..+. .|..++|||++..+++.++-.|..+ ++.+..+||+|++..|...++.|++|.++||||||++++|+|+|.|+
T Consensus 294 ll~e~-~g~s~iVF~~t~~tt~~la~~L~~l--g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd 370 (476)
T KOG0330|consen 294 LLNEL-AGNSVIVFCNTCNTTRFLALLLRNL--GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVD 370 (476)
T ss_pred HHHhh-cCCcEEEEEeccchHHHHHHHHHhc--CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCce
Confidence 33433 3589999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCC
Q 003260 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 565 ~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
+|||||.|. +..+|+||+||+||+|+.|.++.|++.-
T Consensus 371 ~VVNyDiP~-~skDYIHRvGRtaRaGrsG~~ItlVtqy 407 (476)
T KOG0330|consen 371 VVVNYDIPT-HSKDYIHRVGRTARAGRSGKAITLVTQY 407 (476)
T ss_pred EEEecCCCC-cHHHHHHHcccccccCCCcceEEEEehh
Confidence 999999997 8899999999999999999999999763
No 12
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-44 Score=418.31 Aligned_cols=321 Identities=24% Similarity=0.284 Sum_probs=270.5
Q ss_pred CCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC--C--CE-EEEEcc
Q 003260 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--G--KQ-AMVLAP 339 (835)
Q Consensus 266 ~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~--g--~q-vlVLvP 339 (835)
..++ +++.+.+.++..|||+|.+||+.++. ++|++++++||||||.+|++|++..+.. . .. +||++|
T Consensus 35 ~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~-------g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~P 107 (513)
T COG0513 35 GLSPELLQALKDLGFEEPTPIQLAAIPLILA-------GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAP 107 (513)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECC
Confidence 3444 88899998888999999999999985 4899999999999999999999998762 2 12 999999
Q ss_pred cHHHHHHHHHHHHHhhcCCC-CcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----cccCCccEEEEcC
Q 003260 340 TIVLAKQHFDVVSERFSKYP-DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDE 413 (835)
Q Consensus 340 tr~LA~Q~~~~~~~~f~~~~-gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l~~~~l~llVIDE 413 (835)
||+||.|+++.+.. ++.+. ++++..++|+.+...+. ..+..| ++||||||++|.+. +.+.++.++|+||
T Consensus 108 TRELA~Qi~~~~~~-~~~~~~~~~~~~i~GG~~~~~q~---~~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDE 182 (513)
T COG0513 108 TRELAVQIAEELRK-LGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVETLVLDE 182 (513)
T ss_pred CHHHHHHHHHHHHH-HHhhcCCccEEEEECCCCHHHHH---HHHhcC-CCEEEECccHHHHHHHcCCcchhhcCEEEecc
Confidence 99999999999987 66665 68999999998876644 555667 99999999988753 5677889999999
Q ss_pred cccc---chh--hHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCc----cceeEEecccCHH-HHHH
Q 003260 414 EQRF---GVK--QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER----LPIKTHLSAFSKE-KVIS 483 (835)
Q Consensus 414 aHr~---g~~--~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r----~~v~~~~~~~~~~-~l~~ 483 (835)
||+| |+. ....+...+.+.|++++|||++.....++...+.++..+...+... ..+..++...... ....
T Consensus 183 ADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~ 262 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLE 262 (513)
T ss_pred HhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHH
Confidence 9986 542 2344556667899999999998888888888888887776653332 3344544444433 3556
Q ss_pred HHHHHHhc--CCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCC
Q 003260 484 AIKYELDR--GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561 (835)
Q Consensus 484 ~i~~~l~~--ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp 561 (835)
.+...+.. ..+++|||+++..++.++..|... |+++..+||+|++.+|.++++.|++|+.+|||||+++++|||||
T Consensus 263 ~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~--g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~ 340 (513)
T COG0513 263 LLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR--GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIP 340 (513)
T ss_pred HHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC--CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcc
Confidence 66665543 357999999999999999999998 89999999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecC
Q 003260 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPD 601 (835)
Q Consensus 562 ~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~ 601 (835)
++++||+||.|. +.+.|+||+||+||+|+.|.++.|+++
T Consensus 341 ~v~~VinyD~p~-~~e~yvHRiGRTgRaG~~G~ai~fv~~ 379 (513)
T COG0513 341 DVSHVINYDLPL-DPEDYVHRIGRTGRAGRKGVAISFVTE 379 (513)
T ss_pred ccceeEEccCCC-CHHHheeccCccccCCCCCeEEEEeCc
Confidence 999999999997 999999999999999999999999987
No 13
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.2e-44 Score=418.74 Aligned_cols=319 Identities=20% Similarity=0.248 Sum_probs=252.5
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc--------CCCEEEEEcccH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--------AGKQAMVLAPTI 341 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~--------~g~qvlVLvPtr 341 (835)
+.+.+.+.+...|||+|.+||+.++. ++|+|+++|||||||++|++|++..+. .++++|||+||+
T Consensus 141 l~~~l~~~g~~~pt~iQ~~aip~~l~-------G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTr 213 (545)
T PTZ00110 141 ILKSLKNAGFTEPTPIQVQGWPIALS-------GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTR 213 (545)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhc-------CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChH
Confidence 77888888777999999999999875 579999999999999999999887653 257899999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----cccCCccEEEEcCccc
Q 003260 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQR 416 (835)
Q Consensus 342 ~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l~~~~l~llVIDEaHr 416 (835)
+||.|+++.+.. |+...++++..++++.+...+ ...+..+ ++|+|+||+.|.+. ..+.++++|||||||+
T Consensus 214 eLa~Qi~~~~~~-~~~~~~i~~~~~~gg~~~~~q---~~~l~~~-~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~ 288 (545)
T PTZ00110 214 ELAEQIREQCNK-FGASSKIRNTVAYGGVPKRGQ---IYALRRG-VEILIACPGRLIDFLESNVTNLRRVTYLVLDEADR 288 (545)
T ss_pred HHHHHHHHHHHH-HhcccCccEEEEeCCCCHHHH---HHHHHcC-CCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHh
Confidence 999999999987 665557888888888765543 3445555 89999999887643 4578899999999998
Q ss_pred cc---h--hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCC-cceecCCCCC---ccceeEEecccCH----HHHHH
Q 003260 417 FG---V--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD-ASLISTPPPE---RLPIKTHLSAFSK----EKVIS 483 (835)
Q Consensus 417 ~g---~--~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d-~s~I~~~p~~---r~~v~~~~~~~~~----~~l~~ 483 (835)
+. + .....+..++++.+++++|||++.....++...+.+ +..+...... ...+...+..... ..+..
T Consensus 289 mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ 368 (545)
T PTZ00110 289 MLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKM 368 (545)
T ss_pred hhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHH
Confidence 64 2 123445556788999999999877665555444432 2222221111 1122222222111 22333
Q ss_pred HHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCc
Q 003260 484 AIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563 (835)
Q Consensus 484 ~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v 563 (835)
.+......+.++||||++++.++.++..|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|||+|++
T Consensus 369 ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~--g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v 446 (545)
T PTZ00110 369 LLQRIMRDGDKILIFVETKKGADFLTKELRLD--GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDV 446 (545)
T ss_pred HHHHhcccCCeEEEEecChHHHHHHHHHHHHc--CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccC
Confidence 33333336789999999999999999999876 7889999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 564 ~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
++||++|.|. ++.+|+||+||+||.|+.|.||+|+++++
T Consensus 447 ~~VI~~d~P~-s~~~yvqRiGRtGR~G~~G~ai~~~~~~~ 485 (545)
T PTZ00110 447 KYVINFDFPN-QIEDYVHRIGRTGRAGAKGASYTFLTPDK 485 (545)
T ss_pred CEEEEeCCCC-CHHHHHHHhcccccCCCCceEEEEECcch
Confidence 9999999997 99999999999999999999999999874
No 14
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=6.1e-44 Score=410.84 Aligned_cols=323 Identities=22% Similarity=0.248 Sum_probs=258.5
Q ss_pred CCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC---------CCEEE
Q 003260 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---------GKQAM 335 (835)
Q Consensus 266 ~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~---------g~qvl 335 (835)
+.++ +.+.+.+.++..|||+|.+||+.+++ ++|+|+++|||||||++|++|++..+.. ..++|
T Consensus 7 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~-------g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aL 79 (456)
T PRK10590 7 GLSPDILRAVAEQGYREPTPIQQQAIPAVLE-------GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRAL 79 (456)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEE
Confidence 4444 78888888888999999999999875 4799999999999999999999987643 23799
Q ss_pred EEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEE
Q 003260 336 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLV 410 (835)
Q Consensus 336 VLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llV 410 (835)
||+||++||.|+++.+... ..+.++++..+.++.+...+. ..+. +.++|+|+||+.|.+ .+.++++++||
T Consensus 80 il~PtreLa~Qi~~~~~~~-~~~~~~~~~~~~gg~~~~~~~---~~l~-~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lV 154 (456)
T PRK10590 80 ILTPTRELAAQIGENVRDY-SKYLNIRSLVVFGGVSINPQM---MKLR-GGVDVLVATPGRLLDLEHQNAVKLDQVEILV 154 (456)
T ss_pred EEeCcHHHHHHHHHHHHHH-hccCCCEEEEEECCcCHHHHH---HHHc-CCCcEEEEChHHHHHHHHcCCcccccceEEE
Confidence 9999999999999999974 444578888888887665432 2333 569999999998854 34678999999
Q ss_pred EcCccccch-----hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCC--ccceeEEecccCHHHHHH
Q 003260 411 VDEEQRFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLSAFSKEKVIS 483 (835)
Q Consensus 411 IDEaHr~g~-----~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~--r~~v~~~~~~~~~~~l~~ 483 (835)
|||||++.. .....+..+....+++++|||+.+....+....+.++..+...... ...+...+...+.....+
T Consensus 155 iDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 234 (456)
T PRK10590 155 LDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRE 234 (456)
T ss_pred eecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHH
Confidence 999998632 2234455666778999999999877666666656665544432211 122333333334334444
Q ss_pred HHHHHHhc--CCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCC
Q 003260 484 AIKYELDR--GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561 (835)
Q Consensus 484 ~i~~~l~~--ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp 561 (835)
.+...+.. ..+++||||++..++.+++.|... ++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|
T Consensus 235 ~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip 312 (456)
T PRK10590 235 LLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD--GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIE 312 (456)
T ss_pred HHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcc
Confidence 44444443 368999999999999999999887 88999999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 562 ~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
++++||+++.|. +..+|+||+||+||.|..|.|++|+..++
T Consensus 313 ~v~~VI~~~~P~-~~~~yvqR~GRaGR~g~~G~ai~l~~~~d 353 (456)
T PRK10590 313 ELPHVVNYELPN-VPEDYVHRIGRTGRAAATGEALSLVCVDE 353 (456)
T ss_pred cCCEEEEeCCCC-CHHHhhhhccccccCCCCeeEEEEecHHH
Confidence 999999999997 89999999999999999999999997654
No 15
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.2e-43 Score=409.42 Aligned_cols=320 Identities=23% Similarity=0.274 Sum_probs=251.0
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc----------CCCEEEEEcc
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS----------AGKQAMVLAP 339 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~----------~g~qvlVLvP 339 (835)
+.+.+...++..|||+|.+||+.++. ++|+++++|||||||++|++|++..+. .+.+++||+|
T Consensus 132 l~~~L~~~g~~~ptpiQ~~aip~il~-------g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~P 204 (518)
T PLN00206 132 LLLNLETAGYEFPTPIQMQAIPAALS-------GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTP 204 (518)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhc-------CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeC
Confidence 77888887777999999999999874 579999999999999999999987642 3578999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCc
Q 003260 340 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEE 414 (835)
Q Consensus 340 tr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEa 414 (835)
|++||.|+++.++. +....++++..+.|+..... .+..+..| ++|+|+||+.|.+ .+.+.++++||||||
T Consensus 205 TreLa~Qi~~~~~~-l~~~~~~~~~~~~gG~~~~~---q~~~l~~~-~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEa 279 (518)
T PLN00206 205 TRELCVQVEDQAKV-LGKGLPFKTALVVGGDAMPQ---QLYRIQQG-VELIVGTPGRLIDLLSKHDIELDNVSVLVLDEV 279 (518)
T ss_pred CHHHHHHHHHHHHH-HhCCCCceEEEEECCcchHH---HHHHhcCC-CCEEEECHHHHHHHHHcCCccchheeEEEeecH
Confidence 99999999999886 44444678888887765544 33445555 8999999998754 356789999999999
Q ss_pred cccc---hh-hHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCcc--ceeEEecccCH----HHHHHH
Q 003260 415 QRFG---VK-QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL--PIKTHLSAFSK----EKVISA 484 (835)
Q Consensus 415 Hr~g---~~-~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~--~v~~~~~~~~~----~~l~~~ 484 (835)
|++. +. +...+....++.|++++|||+++....++.....++..+........ .+...+..... ..+.+.
T Consensus 280 d~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~ 359 (518)
T PLN00206 280 DCMLERGFRDQVMQIFQALSQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDI 359 (518)
T ss_pred HHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHH
Confidence 9873 32 22233333367899999999988777777666666666654433221 12222221111 122333
Q ss_pred HHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCcc
Q 003260 485 IKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564 (835)
Q Consensus 485 i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~ 564 (835)
+.......++++||||++..++.+++.|.... ++++..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+++
T Consensus 360 l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~-g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~ 438 (518)
T PLN00206 360 LKSKQHFKPPAVVFVSSRLGADLLANAITVVT-GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVR 438 (518)
T ss_pred HHhhcccCCCEEEEcCCchhHHHHHHHHhhcc-CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCC
Confidence 32222234689999999999999999997642 68899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 565 ~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+||++|+|. +..+|+||+||+||.|..|.|++|+++++
T Consensus 439 ~VI~~d~P~-s~~~yihRiGRaGR~g~~G~ai~f~~~~~ 476 (518)
T PLN00206 439 QVIIFDMPN-TIKEYIHQIGRASRMGEKGTAIVFVNEED 476 (518)
T ss_pred EEEEeCCCC-CHHHHHHhccccccCCCCeEEEEEEchhH
Confidence 999999997 99999999999999999999999998753
No 16
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.5e-43 Score=416.06 Aligned_cols=323 Identities=20% Similarity=0.219 Sum_probs=260.9
Q ss_pred CCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc---CCCEEEEEcccH
Q 003260 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPTI 341 (835)
Q Consensus 266 ~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~---~g~qvlVLvPtr 341 (835)
..++ +.+.+.+.++.+|||+|.+||+.+++ ++|+|++||||||||++|++|++..+. .++++|||+||+
T Consensus 12 ~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~-------g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 12 GLKAPILEALNDLGYEKPSPIQAECIPHLLN-------GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHc-------CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 3444 77888888888999999999999874 479999999999999999999987764 346999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----cccCCccEEEEcCccc
Q 003260 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQR 416 (835)
Q Consensus 342 ~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l~~~~l~llVIDEaHr 416 (835)
+||.|+++.+......++++.+..++++.+...+ +..+..+ ++|||+||+.|.+. +.++++.+|||||||+
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q---~~~l~~~-~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ---LRALRQG-PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE 160 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHH---HHHhcCC-CCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH
Confidence 9999999999886566668999999998766543 3444444 89999999988643 5678999999999998
Q ss_pred cc---h--hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCC--ccceeEEecccCHHHHHHHHHHHH
Q 003260 417 FG---V--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLSAFSKEKVISAIKYEL 489 (835)
Q Consensus 417 ~g---~--~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~--r~~v~~~~~~~~~~~l~~~i~~~l 489 (835)
+. + .....+..++...++++||||+++........++.++..+.+.... ...+...+.........+++.+.+
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L 240 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHH
Confidence 63 2 1223445667788999999999877777777777776665443221 222333322222223344444444
Q ss_pred hc--CCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEE
Q 003260 490 DR--GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567 (835)
Q Consensus 490 ~~--ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VI 567 (835)
.. ..+++|||+++..++.+++.|... ++.+..+||+|++.+|+.+++.|++|+++|||||+++++|||+|++++||
T Consensus 241 ~~~~~~~~IVF~~tk~~a~~l~~~L~~~--g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI 318 (629)
T PRK11634 241 EAEDFDAAIIFVRTKNATLEVAEALERN--GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVV 318 (629)
T ss_pred HhcCCCCEEEEeccHHHHHHHHHHHHhC--CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEE
Confidence 33 368999999999999999999988 88999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhcccCCCCCceEEEEEecCC
Q 003260 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 568 i~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
++|.|. +..+|+||+||+||.|+.|.|++|+++.
T Consensus 319 ~~d~P~-~~e~yvqRiGRtGRaGr~G~ai~~v~~~ 352 (629)
T PRK11634 319 NYDIPM-DSESYVHRIGRTGRAGRAGRALLFVENR 352 (629)
T ss_pred EeCCCC-CHHHHHHHhccccCCCCcceEEEEechH
Confidence 999997 9999999999999999999999999764
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.1e-43 Score=412.80 Aligned_cols=324 Identities=20% Similarity=0.214 Sum_probs=256.2
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC----------CCE
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----------GKQ 333 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~----------g~q 333 (835)
++.++ +++.+.+.++..|||+|.+||+.+++ ++|+++++|||||||++|++|++..+.. +.+
T Consensus 14 l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~-------G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~r 86 (572)
T PRK04537 14 FDLHPALLAGLESAGFTRCTPIQALTLPVALP-------GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPR 86 (572)
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCce
Confidence 34455 78888888888999999999999874 5799999999999999999999887632 368
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc------cccCCcc
Q 003260 334 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNNLG 407 (835)
Q Consensus 334 vlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~------l~~~~l~ 407 (835)
+|||+||++||.|+++.+.. |....++++..++|+.+...+...+ . +.++|+|+||+.|.+. +.+.+++
T Consensus 87 aLIl~PTreLa~Qi~~~~~~-l~~~~~i~v~~l~Gg~~~~~q~~~l---~-~~~dIiV~TP~rL~~~l~~~~~~~l~~v~ 161 (572)
T PRK04537 87 ALILAPTRELAIQIHKDAVK-FGADLGLRFALVYGGVDYDKQRELL---Q-QGVDVIIATPGRLIDYVKQHKVVSLHACE 161 (572)
T ss_pred EEEEeCcHHHHHHHHHHHHH-HhccCCceEEEEECCCCHHHHHHHH---h-CCCCEEEECHHHHHHHHHhccccchhhee
Confidence 99999999999999999987 5555589999999988776544333 3 4589999999988642 3467889
Q ss_pred EEEEcCccccc---h-hhH-HHHhhhcC--CceEEEeecCCChhhHHHHHhcCCCcceecCCCCC--ccceeEEecccCH
Q 003260 408 LLVVDEEQRFG---V-KQK-EKIASFKI--SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLSAFSK 478 (835)
Q Consensus 408 llVIDEaHr~g---~-~~~-e~l~~l~~--~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~--r~~v~~~~~~~~~ 478 (835)
+|||||||++. + ... ..+..+.. ..+++++|||+..+...+....+.++..+...... ...+...+.....
T Consensus 162 ~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~ 241 (572)
T PRK04537 162 ICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPAD 241 (572)
T ss_pred eeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCH
Confidence 99999999863 2 112 22333333 67899999999888777776666555433222111 1122222222233
Q ss_pred HHHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCc
Q 003260 479 EKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556 (835)
Q Consensus 479 ~~l~~~i~~~l~--~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~ 556 (835)
......+...+. .+.++|||||++..++.+++.|... ++.+..+||+|++.+|+.+++.|++|+++|||||+++++
T Consensus 242 ~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~--g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~ar 319 (572)
T PRK04537 242 EEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH--GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAAR 319 (572)
T ss_pred HHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhc
Confidence 333444444443 3579999999999999999999987 889999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 557 GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|||+|++++||++|.|. ++.+|+||+||+||.|+.|.|++|+.+.+
T Consensus 320 GIDip~V~~VInyd~P~-s~~~yvqRiGRaGR~G~~G~ai~~~~~~~ 365 (572)
T PRK04537 320 GLHIDGVKYVYNYDLPF-DAEDYVHRIGRTARLGEEGDAISFACERY 365 (572)
T ss_pred CCCccCCCEEEEcCCCC-CHHHHhhhhcccccCCCCceEEEEecHHH
Confidence 99999999999999995 99999999999999999999999997653
No 18
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.1e-42 Score=398.08 Aligned_cols=324 Identities=19% Similarity=0.224 Sum_probs=256.1
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-------CCEEEE
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-------GKQAMV 336 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-------g~qvlV 336 (835)
+..++ +++.+.+.++..|||+|.+||+.+++ ++|+++++|||+|||++|++|++..+.+ +.+++|
T Consensus 6 l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~-------g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~li 78 (434)
T PRK11192 6 LELDESLLEALQDKGYTRPTAIQAEAIPPALD-------GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILI 78 (434)
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEE
Confidence 34445 78888888888999999999999874 4789999999999999999999987632 368999
Q ss_pred EcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEE
Q 003260 337 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVV 411 (835)
Q Consensus 337 LvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVI 411 (835)
++||++||.|+++.+.. +....++++..++|+.....+...+ .+.++|+|+||+.|.+ .+.+.++++|||
T Consensus 79 l~Pt~eLa~Q~~~~~~~-l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lVi 153 (434)
T PRK11192 79 LTPTRELAMQVADQARE-LAKHTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCRAVETLIL 153 (434)
T ss_pred ECCcHHHHHHHHHHHHH-HHccCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcccCCEEEE
Confidence 99999999999999987 5555579999999988776544333 3568999999998864 345688999999
Q ss_pred cCccccch---h-h-HHHHhhhcCCceEEEeecCCChhhH-HHHHhcCCCcceecCCCCCc--cceeEEeccc-CHHHHH
Q 003260 412 DEEQRFGV---K-Q-KEKIASFKISVDVLTLSATPIPRTL-YLALTGFRDASLISTPPPER--LPIKTHLSAF-SKEKVI 482 (835)
Q Consensus 412 DEaHr~g~---~-~-~e~l~~l~~~~~vL~lSATp~p~tl-~~~~~g~~d~s~I~~~p~~r--~~v~~~~~~~-~~~~l~ 482 (835)
||||++.. . . ...........+++++|||+....+ .+....+.++..+...+... ..+..++... ......
T Consensus 154 DEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~ 233 (434)
T PRK11192 154 DEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKT 233 (434)
T ss_pred ECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHH
Confidence 99998632 1 1 2223344566799999999975433 33333344444444443322 2233333222 233444
Q ss_pred HHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCC
Q 003260 483 SAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560 (835)
Q Consensus 483 ~~i~~~l~--~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDI 560 (835)
+.+...+. ..++++|||+++++++.+++.|... ++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+
T Consensus 234 ~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDi 311 (434)
T PRK11192 234 ALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA--GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDI 311 (434)
T ss_pred HHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC--CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccC
Confidence 55555554 3578999999999999999999986 8899999999999999999999999999999999999999999
Q ss_pred CCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 561 p~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|++++||+++.|. +...|+||+||+||.|..|.|+++++.++
T Consensus 312 p~v~~VI~~d~p~-s~~~yiqr~GR~gR~g~~g~ai~l~~~~d 353 (434)
T PRK11192 312 DDVSHVINFDMPR-SADTYLHRIGRTGRAGRKGTAISLVEAHD 353 (434)
T ss_pred CCCCEEEEECCCC-CHHHHhhcccccccCCCCceEEEEecHHH
Confidence 9999999999997 99999999999999999999999997653
No 19
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.4e-42 Score=399.76 Aligned_cols=324 Identities=20% Similarity=0.213 Sum_probs=255.4
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC----------CCE
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----------GKQ 333 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~----------g~q 333 (835)
+..++ +.+.+.+.+...|||+|.+||+.+++ ++|+|+++|||||||++|+++++..+.. +.+
T Consensus 92 ~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~-------G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 92 FNLAPELMHAIHDLGFPYCTPIQAQVLGYTLA-------GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 34445 77888876666999999999999874 5799999999999999999999887643 368
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccE
Q 003260 334 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGL 408 (835)
Q Consensus 334 vlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~l 408 (835)
++||+||++||.|+++.++. +....++++..++|+.+.... .+.+..+.++|+|+||++|.+ ...++++++
T Consensus 165 aLil~PtreLa~Q~~~~~~~-l~~~~~~~v~~~~gg~~~~~~---~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~ 240 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAA-LTKYTGLNVMTFVGGMDFDKQ---LKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEV 240 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHH-hhccCCCEEEEEEccCChHHH---HHHHhCCCCCEEEECHHHHHHHHHcCCcccccCce
Confidence 99999999999999999987 544457899999988665443 344455679999999998864 345789999
Q ss_pred EEEcCccccch----hhHH-HHhhhc--CCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCcc--ceeEEecccCHH
Q 003260 409 LVVDEEQRFGV----KQKE-KIASFK--ISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL--PIKTHLSAFSKE 479 (835)
Q Consensus 409 lVIDEaHr~g~----~~~e-~l~~l~--~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~--~v~~~~~~~~~~ 479 (835)
|||||+|++.. .... .+..+. .+.+++++|||..............++..+...+.... .+...+......
T Consensus 241 lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 320 (475)
T PRK01297 241 MVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGS 320 (475)
T ss_pred EEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecch
Confidence 99999998632 1122 233332 35689999999887777766666666665544333221 122222222222
Q ss_pred HHHHHHHHHHhc--CCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcC
Q 003260 480 KVISAIKYELDR--GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 557 (835)
Q Consensus 480 ~l~~~i~~~l~~--ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~G 557 (835)
.....+...+.. ..+++|||++++.++.+++.|... ++.+..+||+++.++|.++++.|++|+++|||||+++++|
T Consensus 321 ~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~G 398 (475)
T PRK01297 321 DKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD--GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRG 398 (475)
T ss_pred hHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccC
Confidence 233444444433 359999999999999999999887 7899999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCC
Q 003260 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 558 IDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
||+|++++||+++.|. +..+|+||+||+||.|+.|.+++|+.++
T Consensus 399 IDi~~v~~VI~~~~P~-s~~~y~Qr~GRaGR~g~~g~~i~~~~~~ 442 (475)
T PRK01297 399 IHIDGISHVINFTLPE-DPDDYVHRIGRTGRAGASGVSISFAGED 442 (475)
T ss_pred CcccCCCEEEEeCCCC-CHHHHHHhhCccCCCCCCceEEEEecHH
Confidence 9999999999999997 9999999999999999999999999865
No 20
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-42 Score=372.51 Aligned_cols=327 Identities=21% Similarity=0.293 Sum_probs=275.8
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC------C--CEEE
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA------G--KQAM 335 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~------g--~qvl 335 (835)
.|..+ +...+...++-..||.|..+|+.++. +.|+++.++||||||++|++|++..+.+ . --++
T Consensus 11 ~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~-------~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 11 PPLSPWLLEALDESGFEKMTPVQAATIPLLLK-------NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred CCccHHHHHHHHhcCCcccCHHHHhhhHHHhc-------CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 34446 56777777677999999999999985 5899999999999999999999998822 1 2689
Q ss_pred EEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-------cccCCccE
Q 003260 336 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-------VVYNNLGL 408 (835)
Q Consensus 336 VLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-------l~~~~l~l 408 (835)
|++|||+||.|+.+........++++++.++.|+.+..+ .+..+.+..++|+||||++|.+. +.++++.+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~---Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~ 160 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEE---DIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEI 160 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHH---HHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccce
Confidence 999999999999999988777778899999999976554 56666777799999999998752 45679999
Q ss_pred EEEcCcccc---chh--hHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCc--cc--eeEEecccCHH
Q 003260 409 LVVDEEQRF---GVK--QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LP--IKTHLSAFSKE 479 (835)
Q Consensus 409 lVIDEaHr~---g~~--~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r--~~--v~~~~~~~~~~ 479 (835)
+|+||||++ |+. ....|..++...++=++|||.......+...|++++..+.+..... .| ...++.....+
T Consensus 161 LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~ 240 (567)
T KOG0345|consen 161 LVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEAD 240 (567)
T ss_pred EEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHH
Confidence 999999984 663 3456777888889999999999888889999999998877654433 23 44555555555
Q ss_pred HHHHHHHHHHhc--CCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcC
Q 003260 480 KVISAIKYELDR--GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 557 (835)
Q Consensus 480 ~l~~~i~~~l~~--ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~G 557 (835)
.....+...+.. ..+++||+++-..++.....+....+...+..+||+|.+.+|..++..|.+..-.+|+|||++++|
T Consensus 241 eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARG 320 (567)
T KOG0345|consen 241 EKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARG 320 (567)
T ss_pred HHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhcc
Confidence 555555555533 478999999999999999999998888999999999999999999999999888899999999999
Q ss_pred CCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCC
Q 003260 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 558 IDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
||||++++||.+|+|. +.+.+.||+||+||.|+.|.|++|..+.
T Consensus 321 lDip~iD~VvQ~DpP~-~~~~FvHR~GRTaR~gr~G~Aivfl~p~ 364 (567)
T KOG0345|consen 321 LDIPGIDLVVQFDPPK-DPSSFVHRCGRTARAGREGNAIVFLNPR 364 (567)
T ss_pred CCCCCceEEEecCCCC-ChhHHHhhcchhhhccCccceEEEeccc
Confidence 9999999999999998 8999999999999999999999998774
No 21
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.2e-41 Score=385.01 Aligned_cols=322 Identities=20% Similarity=0.241 Sum_probs=252.8
Q ss_pred CCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc---CCCEEEEEcccHH
Q 003260 267 KNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPTIV 342 (835)
Q Consensus 267 ~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~---~g~qvlVLvPtr~ 342 (835)
.++ +.+.+.......|||+|.+||+.+++ +.|+++++|||||||++|+++++..+. .+.+++|++||++
T Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~-------~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~ 107 (401)
T PTZ00424 35 LNEDLLRGIYSYGFEKPSAIQQRGIKPILD-------GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRE 107 (401)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHH
Confidence 344 56667665556899999999999975 478999999999999999999988775 3578999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCcccc
Q 003260 343 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRF 417 (835)
Q Consensus 343 LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaHr~ 417 (835)
|+.|+++.+.. ++...++.+..+.++....+ .+..+..+ ++|+|+||+.|.+ ...++++++|||||+|++
T Consensus 108 L~~Q~~~~~~~-~~~~~~~~~~~~~g~~~~~~---~~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~ 182 (401)
T PTZ00424 108 LAQQIQKVVLA-LGDYLKVRCHACVGGTVVRD---DINKLKAG-VHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEM 182 (401)
T ss_pred HHHHHHHHHHH-HhhhcCceEEEEECCcCHHH---HHHHHcCC-CCEEEECcHHHHHHHHhCCcccccccEEEEecHHHH
Confidence 99999998887 55555678888888765433 34445545 8999999998754 346789999999999986
Q ss_pred ch-----hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCC--ccceeEEecccCH-HHHHHHHHHHH
Q 003260 418 GV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLSAFSK-EKVISAIKYEL 489 (835)
Q Consensus 418 g~-----~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~--r~~v~~~~~~~~~-~~l~~~i~~~l 489 (835)
.. ...+.+..+..+.+++++|||++..........+.++..+...... ...+...+..... ......+...+
T Consensus 183 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (401)
T PTZ00424 183 LSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLY 262 (401)
T ss_pred HhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHH
Confidence 33 2234456667889999999999877666666666655544332211 1122223222222 22233333333
Q ss_pred h--cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEE
Q 003260 490 D--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567 (835)
Q Consensus 490 ~--~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VI 567 (835)
. ...+++|||++++.++.+++.|... ++.+..+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||
T Consensus 263 ~~~~~~~~ivF~~t~~~~~~l~~~l~~~--~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI 340 (401)
T PTZ00424 263 ETLTITQAIIYCNTRRKVDYLTKKMHER--DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVI 340 (401)
T ss_pred HhcCCCeEEEEecCcHHHHHHHHHHHHC--CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEE
Confidence 2 3468999999999999999999887 78999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 568 i~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+++.|. +..+|+||+||+||.|+.|.|++|+++++
T Consensus 341 ~~~~p~-s~~~y~qr~GRagR~g~~G~~i~l~~~~~ 375 (401)
T PTZ00424 341 NYDLPA-SPENYIHRIGRSGRFGRKGVAINFVTPDD 375 (401)
T ss_pred EECCCC-CHHHEeecccccccCCCCceEEEEEcHHH
Confidence 999996 99999999999999999999999997653
No 22
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-42 Score=379.28 Aligned_cols=318 Identities=22% Similarity=0.266 Sum_probs=263.6
Q ss_pred hHHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC------CCEEEEEcccHH
Q 003260 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA------GKQAMVLAPTIV 342 (835)
Q Consensus 269 ~l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~------g~qvlVLvPtr~ 342 (835)
|+++.+...++..|||+|..+||..+- ++|++.|+.||||||.+|++|++..+.- -.+||||+|||+
T Consensus 191 PlLka~~~lGy~~PTpIQ~a~IPvall-------gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRE 263 (691)
T KOG0338|consen 191 PLLKACSTLGYKKPTPIQVATIPVALL-------GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRE 263 (691)
T ss_pred HHHHHHHhcCCCCCCchhhhcccHHhh-------cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHH
Confidence 478888888888999999999997653 5899999999999999999999987643 248999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc------cccCCccEEEEcCccc
Q 003260 343 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNNLGLLVVDEEQR 416 (835)
Q Consensus 343 LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~------l~~~~l~llVIDEaHr 416 (835)
||.|++...++ ++.|..+.|+++.|+.+...++..++ ..+||||+||++|.++ +.+.++.++|+|||||
T Consensus 264 LaiQv~sV~~q-laqFt~I~~~L~vGGL~lk~QE~~LR----s~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR 338 (691)
T KOG0338|consen 264 LAIQVHSVTKQ-LAQFTDITVGLAVGGLDLKAQEAVLR----SRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR 338 (691)
T ss_pred HHHHHHHHHHH-HHhhccceeeeeecCccHHHHHHHHh----hCCCEEEecchhHHHHhccCCCccccceeEEEechHHH
Confidence 99999999987 78888899999999999988776654 3499999999999764 3567899999999999
Q ss_pred c---ch--hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCcccee--E-Eec-----ccCHHHHHH
Q 003260 417 F---GV--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK--T-HLS-----AFSKEKVIS 483 (835)
Q Consensus 417 ~---g~--~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~~v~--~-~~~-----~~~~~~l~~ 483 (835)
| |+ ...+.+...+.+.|.++||||+....-.++...+..+.-|.+.|....+.. . ++. +...+.++.
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~ 418 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLA 418 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHH
Confidence 7 33 445667777889999999999988888888777777766666554433211 1 110 111223333
Q ss_pred HHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCc
Q 003260 484 AIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563 (835)
Q Consensus 484 ~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v 563 (835)
.+...+- ...++||+.+.+.+..+.-.|--+ |+++.-+||.+++.+|-+.++.|++++++|||||+++++|+||++|
T Consensus 419 ~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLl--gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 419 SLITRTF-QDRTIVFVRTKKQAHRLRILLGLL--GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHhc-ccceEEEEehHHHHHHHHHHHHHh--hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 3332222 467999999999998887776666 8999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCC
Q 003260 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 564 ~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
.+||||.+|. +...|+||+||+.|+|+.|.++.|+.++
T Consensus 496 ~tVINy~mP~-t~e~Y~HRVGRTARAGRaGrsVtlvgE~ 533 (691)
T KOG0338|consen 496 QTVINYAMPK-TIEHYLHRVGRTARAGRAGRSVTLVGES 533 (691)
T ss_pred eEEEeccCch-hHHHHHHHhhhhhhcccCcceEEEeccc
Confidence 9999999998 9999999999999999999999999876
No 23
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2e-41 Score=391.31 Aligned_cols=310 Identities=19% Similarity=0.251 Sum_probs=246.9
Q ss_pred HHHhCCC-CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHH
Q 003260 274 FAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 274 ~~~~f~~-~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~ 352 (835)
+++.|+| .++|.|.+||+.+++ ++|+++++|||+|||++|++|++. .+..++|++|+++|+.|++..+.
T Consensus 3 l~~~~g~~~~r~~Q~~ai~~~l~-------g~dvlv~apTGsGKTl~y~lp~l~---~~~~~lVi~P~~~L~~dq~~~l~ 72 (470)
T TIGR00614 3 LKTVFGLSSFRPVQLEVINAVLL-------GRDCFVVMPTGGGKSLCYQLPALC---SDGITLVISPLISLMEDQVLQLK 72 (470)
T ss_pred hHhhcCCCCCCHHHHHHHHHHHc-------CCCEEEEcCCCCcHhHHHHHHHHH---cCCcEEEEecHHHHHHHHHHHHH
Confidence 4566777 899999999999975 468999999999999999999875 36789999999999999999887
Q ss_pred HhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc-------ccCCccEEEEcCccccc---hh--
Q 003260 353 ERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-------VYNNLGLLVVDEEQRFG---VK-- 420 (835)
Q Consensus 353 ~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l-------~~~~l~llVIDEaHr~g---~~-- 420 (835)
. + |+.+..+.+..+..++...+..+..|.++|+++||+.+.... ...++++|||||||+++ ..
T Consensus 73 ~-~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr 147 (470)
T TIGR00614 73 A-S----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFR 147 (470)
T ss_pred H-c----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccH
Confidence 5 2 688899999888888888888888999999999999875422 45789999999999853 21
Q ss_pred ----hHHHHhhhcCCceEEEeecCCChhhHHHHHh--cCCCcceecCCCCCccceeEEecccCHHHHHHHHHHHHh---c
Q 003260 421 ----QKEKIASFKISVDVLTLSATPIPRTLYLALT--GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELD---R 491 (835)
Q Consensus 421 ----~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~--g~~d~s~I~~~p~~r~~v~~~~~~~~~~~l~~~i~~~l~---~ 491 (835)
....+....++.+++++|||+.+........ ++.++.++... ..+..+...+..... ...+.+...+. .
T Consensus 148 ~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s-~~r~nl~~~v~~~~~-~~~~~l~~~l~~~~~ 225 (470)
T TIGR00614 148 PDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS-FDRPNLYYEVRRKTP-KILEDLLRFIRKEFK 225 (470)
T ss_pred HHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC-CCCCCcEEEEEeCCc-cHHHHHHHHHHHhcC
Confidence 1122344457889999999998876543332 33344333322 223333222222211 12223333332 4
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecC
Q 003260 492 GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571 (835)
Q Consensus 492 ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~ 571 (835)
+..++|||++++.++.+++.|... ++.+..+||+|++.+|+.+++.|.+|+++|||||+++++|||+|++++||+++.
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~--g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~ 303 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNL--GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL 303 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhc--CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCC
Confidence 556799999999999999999987 889999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 572 p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|. ++..|+||+||+||.|..|.|++|+++.+
T Consensus 304 P~-s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d 334 (470)
T TIGR00614 304 PK-SMESYYQESGRAGRDGLPSECHLFYAPAD 334 (470)
T ss_pred CC-CHHHHHhhhcCcCCCCCCceEEEEechhH
Confidence 97 99999999999999999999999998764
No 24
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.8e-40 Score=399.89 Aligned_cols=317 Identities=17% Similarity=0.194 Sum_probs=242.8
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC--CCEEEEEcccHHHHHHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~--g~qvlVLvPtr~LA~Q~ 347 (835)
+.+.+.+.+...|||+|.+||+.+++ ++|+++++|||||||++|++|++..+.. +.++|||+||++||.|+
T Consensus 25 l~~~L~~~g~~~p~~~Q~~ai~~il~-------G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~ 97 (742)
T TIGR03817 25 VVAALEAAGIHRPWQHQARAAELAHA-------GRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQ 97 (742)
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHHHC-------CCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHH
Confidence 77888887777999999999999874 5799999999999999999999988744 46999999999999999
Q ss_pred HHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc---------ccCCccEEEEcCcccc-
Q 003260 348 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV---------VYNNLGLLVVDEEQRF- 417 (835)
Q Consensus 348 ~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l---------~~~~l~llVIDEaHr~- 417 (835)
++++++ ++ ..++++..+.|+.+..++. .+.. .++|+|+||++|...+ .++++++|||||+|++
T Consensus 98 ~~~l~~-l~-~~~i~v~~~~Gdt~~~~r~----~i~~-~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~ 170 (742)
T TIGR03817 98 LRAVRE-LT-LRGVRPATYDGDTPTEERR----WARE-HARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYR 170 (742)
T ss_pred HHHHHH-hc-cCCeEEEEEeCCCCHHHHH----HHhc-CCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhcc
Confidence 999987 55 3478999999887755442 2333 3899999999886321 2689999999999986
Q ss_pred ---chhhHHH---Hh----hhcCCceEEEeecCCChhhHHHHHhcCC-CcceecCCCCCccceeEEe-ccc---------
Q 003260 418 ---GVKQKEK---IA----SFKISVDVLTLSATPIPRTLYLALTGFR-DASLISTPPPERLPIKTHL-SAF--------- 476 (835)
Q Consensus 418 ---g~~~~e~---l~----~l~~~~~vL~lSATp~p~tl~~~~~g~~-d~s~I~~~p~~r~~v~~~~-~~~--------- 476 (835)
|...... +. .+..+.|++++|||....... +...+. +..++.............+ ...
T Consensus 171 g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~-~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~ 249 (742)
T TIGR03817 171 GVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAA-ASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENG 249 (742)
T ss_pred CccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHH-HHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccc
Confidence 2221112 22 224568999999998654432 222222 2222221111111111111 000
Q ss_pred ------CHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC------CCeEEEEeCCCCHHHHHHHHHHhhcCC
Q 003260 477 ------SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP------GVDIAIAHGQQYSRQLEETMEKFAQGA 544 (835)
Q Consensus 477 ------~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p------~~~v~~lhg~m~~~ere~vl~~F~~g~ 544 (835)
........+...+..+.+++||||+++.++.++..|++.+. +.++..+||++++++|.+++++|++|+
T Consensus 250 ~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~ 329 (742)
T TIGR03817 250 APVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGE 329 (742)
T ss_pred cccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCC
Confidence 01234455566666789999999999999999999877531 357889999999999999999999999
Q ss_pred eeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCC
Q 003260 545 IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 545 ~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
+++||||+++++|||||++++||+++.|. +.++|+||+||+||.|+.|.++++.+++
T Consensus 330 i~vLVaTd~lerGIDI~~vd~VI~~~~P~-s~~~y~qRiGRaGR~G~~g~ai~v~~~~ 386 (742)
T TIGR03817 330 LLGVATTNALELGVDISGLDAVVIAGFPG-TRASLWQQAGRAGRRGQGALVVLVARDD 386 (742)
T ss_pred ceEEEECchHhccCCcccccEEEEeCCCC-CHHHHHHhccccCCCCCCcEEEEEeCCC
Confidence 99999999999999999999999999997 9999999999999999999999998754
No 25
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-41 Score=346.95 Aligned_cols=319 Identities=19% Similarity=0.220 Sum_probs=264.0
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc---CCCEEEEEcccHHHHHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPTIVLAKQ 346 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~---~g~qvlVLvPtr~LA~Q 346 (835)
+.+.+-+.++-.|+.+|++||+.|++ ++|++.++..|+|||.+|-..++..+. ...|++||.|||+||.|
T Consensus 38 lLrgiY~yGfekPS~IQqrAi~~Ilk-------GrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Q 110 (400)
T KOG0328|consen 38 LLRGIYAYGFEKPSAIQQRAIPQILK-------GRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQ 110 (400)
T ss_pred HHHHHHHhccCCchHHHhhhhhhhhc-------ccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHH
Confidence 56666666777999999999999986 689999999999999988666665543 34799999999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----cccCCccEEEEcCccccch--
Q 003260 347 HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFGV-- 419 (835)
Q Consensus 347 ~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l~~~~l~llVIDEaHr~g~-- 419 (835)
+.+.+.. ++.+.++.+..+.|+.+..+ .++.+.-| .+++.|||+++.+. +..+.+.++|+||+|.+..
T Consensus 111 i~~vi~a-lg~~mnvq~hacigg~n~ge---dikkld~G-~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kg 185 (400)
T KOG0328|consen 111 IQKVILA-LGDYMNVQCHACIGGKNLGE---DIKKLDYG-QHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKG 185 (400)
T ss_pred HHHHHHH-hcccccceEEEEecCCccch---hhhhhccc-ceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhh
Confidence 9999987 78888999999999887665 44555567 89999999988753 4557789999999998732
Q ss_pred ---hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCcc--ceeEEecccCHHH-HHHHHHHHHhc--
Q 003260 420 ---KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL--PIKTHLSAFSKEK-VISAIKYELDR-- 491 (835)
Q Consensus 420 ---~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~--~v~~~~~~~~~~~-l~~~i~~~l~~-- 491 (835)
......+.++++.|++++|||.+.+.+.+...++.|+.-+-....+.. .+..++.....+. ..+.+....+.
T Consensus 186 fk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~Lt 265 (400)
T KOG0328|consen 186 FKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLT 265 (400)
T ss_pred HHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhe
Confidence 234556677889999999999999999999999988876655433211 1444444444333 34444443322
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecC
Q 003260 492 GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571 (835)
Q Consensus 492 ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~ 571 (835)
-.|.++|||++..++.+.+.+++. ++.|..+||+|++++|+++|++|++|+.+||++|++.++|+|+|.|++|||||.
T Consensus 266 ItQavIFcnTk~kVdwLtekm~~~--nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDL 343 (400)
T KOG0328|consen 266 ITQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDL 343 (400)
T ss_pred hheEEEEecccchhhHHHHHHHhh--CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCC
Confidence 369999999999999999999998 889999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 572 p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|. +.+.|+||+||.||.|+.|.++-|+..++
T Consensus 344 P~-nre~YIHRIGRSGRFGRkGvainFVk~~d 374 (400)
T KOG0328|consen 344 PN-NRELYIHRIGRSGRFGRKGVAINFVKSDD 374 (400)
T ss_pred Cc-cHHHHhhhhccccccCCcceEEEEecHHH
Confidence 98 88999999999999999999999997764
No 26
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.1e-40 Score=396.88 Aligned_cols=320 Identities=17% Similarity=0.167 Sum_probs=250.8
Q ss_pred CCCCCh-HHHHHHHhCCC-CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccH
Q 003260 264 PYPKNP-AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 341 (835)
Q Consensus 264 ~~~~~~-l~~~~~~~f~~-~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr 341 (835)
.||+.. +...++..|+| .++|.|.+||+.++. ++|+|+++|||+|||++|++|++.. +..+|||+|++
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~-------GrDVLVimPTGSGKSLcYQLPAL~~---~GiTLVISPLi 510 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMS-------GYDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLV 510 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHc-------CCCEEEEcCCCccHHHHHHHHHHHc---CCcEEEEeCHH
Confidence 467665 55667777877 999999999999975 5799999999999999999998754 57899999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhc--CCcceeeccHHHhhcc------c----ccCCccEE
Q 003260 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH--GHLNIIVGTHSLLGSR------V----VYNNLGLL 409 (835)
Q Consensus 342 ~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~--G~~dIIVgT~~~L~~~------l----~~~~l~ll 409 (835)
+|+.++...+... |+.+..++++.+..++...+..+.. |.++|+|+||+.|... + ....+.+|
T Consensus 511 SLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslI 585 (1195)
T PLN03137 511 SLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARF 585 (1195)
T ss_pred HHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccccee
Confidence 9999777666542 7899999999988888888887766 8899999999987531 1 12348899
Q ss_pred EEcCcccc---chhh------HHHHhhhcCCceEEEeecCCChhhHHHHHh--cCCCcceecCCCCCccceeEEecccCH
Q 003260 410 VVDEEQRF---GVKQ------KEKIASFKISVDVLTLSATPIPRTLYLALT--GFRDASLISTPPPERLPIKTHLSAFSK 478 (835)
Q Consensus 410 VIDEaHr~---g~~~------~e~l~~l~~~~~vL~lSATp~p~tl~~~~~--g~~d~s~I~~~p~~r~~v~~~~~~~~~ 478 (835)
||||||++ |... ...+....+++++++||||..+........ ++.+..++.. ...+..+...+....
T Consensus 586 VIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~-Sf~RpNL~y~Vv~k~- 663 (1195)
T PLN03137 586 VIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ-SFNRPNLWYSVVPKT- 663 (1195)
T ss_pred ccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec-ccCccceEEEEeccc-
Confidence 99999984 4221 223444457889999999998876654332 3333333322 122333322222221
Q ss_pred HHHHHHHHHHHh---cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCC
Q 003260 479 EKVISAIKYELD---RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555 (835)
Q Consensus 479 ~~l~~~i~~~l~---~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie 555 (835)
......+...+. .+...||||+++..++.+++.|... ++.+..+||+|++.+|+.++++|.+|+++|||||++++
T Consensus 664 kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~--Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFG 741 (1195)
T PLN03137 664 KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEF--GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFG 741 (1195)
T ss_pred hhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHC--CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhh
Confidence 122233333332 2457899999999999999999987 89999999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 556 ~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+|||+|+|++||++++|. +++.|+|++|||||.|..|.|++||...+
T Consensus 742 MGIDkPDVR~VIHydlPk-SiEsYyQriGRAGRDG~~g~cILlys~~D 788 (1195)
T PLN03137 742 MGINKPDVRFVIHHSLPK-SIEGYHQECGRAGRDGQRSSCVLYYSYSD 788 (1195)
T ss_pred cCCCccCCcEEEEcCCCC-CHHHHHhhhcccCCCCCCceEEEEecHHH
Confidence 999999999999999998 99999999999999999999999997543
No 27
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-40 Score=347.47 Aligned_cols=334 Identities=21% Similarity=0.243 Sum_probs=259.3
Q ss_pred CCCChH-HHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC---CCEEEEEccc
Q 003260 265 YPKNPA-IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPT 340 (835)
Q Consensus 265 ~~~~~l-~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~---g~qvlVLvPt 340 (835)
....+| .+.+.+...+.|||+|..||+.|++ ++|+|-||.||||||.+|.+|++..++. |--++|+.||
T Consensus 12 LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILe-------Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPT 84 (442)
T KOG0340|consen 12 LGLSPWLVEQLKALGIKKPTPIQQACIPKILE-------GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPT 84 (442)
T ss_pred cCccHHHHHHHHHhcCCCCCchHhhhhHHHhc-------ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecch
Confidence 455664 5778888889999999999999986 6899999999999999999999999876 4578999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc---------ccCCccEEEE
Q 003260 341 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV---------VYNNLGLLVV 411 (835)
Q Consensus 341 r~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l---------~~~~l~llVI 411 (835)
|+||.|+.+.|.. ++...++++.+++|+.+.-.+...+ ..++++||+||++|.+.+ .|.++.++|+
T Consensus 85 rELA~QiaEQF~a-lGk~l~lK~~vivGG~d~i~qa~~L----~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVl 159 (442)
T KOG0340|consen 85 RELALQIAEQFIA-LGKLLNLKVSVIVGGTDMIMQAAIL----SDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVL 159 (442)
T ss_pred HHHHHHHHHHHHH-hcccccceEEEEEccHHHhhhhhhc----ccCCCeEecCccccccccccCCccchhhhhceeeEEe
Confidence 9999999999986 7887799999999998765544333 356999999999986532 3678999999
Q ss_pred cCccccchhh----HHH-HhhhcCCceEEEeecCCChhhHHHHHhcCCC--cceecCCCCCccc---eeEEe--cccCHH
Q 003260 412 DEEQRFGVKQ----KEK-IASFKISVDVLTLSATPIPRTLYLALTGFRD--ASLISTPPPERLP---IKTHL--SAFSKE 479 (835)
Q Consensus 412 DEaHr~g~~~----~e~-l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d--~s~I~~~p~~r~~---v~~~~--~~~~~~ 479 (835)
|||+++.... .+. ...++...|.++||||...........-... ....+..+....+ .+.++ .....+
T Consensus 160 DEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkd 239 (442)
T KOG0340|consen 160 DEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKD 239 (442)
T ss_pred cchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhH
Confidence 9999974322 222 3445566799999999754433332222111 1111111111000 00111 111122
Q ss_pred HHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcC
Q 003260 480 KVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 557 (835)
Q Consensus 480 ~l~~~i~~~l~--~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~G 557 (835)
.+.-.+.+... ..+.+++|+|+..+|+.++..|+.+ ++++..+|+.|++.+|-..+.+|+++..+|||||+++++|
T Consensus 240 aYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l--e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRG 317 (442)
T KOG0340|consen 240 AYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL--EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRG 317 (442)
T ss_pred HHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh--ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcC
Confidence 22222233333 3689999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHH
Q 003260 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619 (835)
Q Consensus 558 IDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~ 619 (835)
+|||.|..|||+|.|+ ++..|+||+||+.|+|+.|.++.++++. ..+.+.+|++.
T Consensus 318 LDIP~V~LVvN~diPr-~P~~yiHRvGRtARAGR~G~aiSivt~r------Dv~l~~aiE~~ 372 (442)
T KOG0340|consen 318 LDIPTVELVVNHDIPR-DPKDYIHRVGRTARAGRKGMAISIVTQR------DVELLQAIEEE 372 (442)
T ss_pred CCCCceeEEEecCCCC-CHHHHHHhhcchhcccCCcceEEEechh------hHHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999999754 45678888764
No 28
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.2e-39 Score=386.77 Aligned_cols=318 Identities=20% Similarity=0.245 Sum_probs=249.7
Q ss_pred CCCCh-HHHHHHHhCCC-CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHH
Q 003260 265 YPKNP-AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIV 342 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~-~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~ 342 (835)
++.++ ....+++.|+| .++|.|.+||+.+++ ++|+++++|||+|||++|++|++.. +..++|++|+++
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~-------g~dvlv~apTGsGKTl~y~lpal~~---~g~tlVisPl~s 76 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLS-------GRDCLVVMPTGGGKSLCYQIPALVL---DGLTLVVSPLIS 76 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHc-------CCCEEEEcCCCchHHHHHHHHHHHc---CCCEEEEecHHH
Confidence 34444 45667777888 799999999999874 5799999999999999999998754 567999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCcccc
Q 003260 343 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRF 417 (835)
Q Consensus 343 LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaHr~ 417 (835)
|+.|+.+.++.. |+.+..+.+..+..+....+..+..|.++++++||+.+.. .+...++++|||||||++
T Consensus 77 L~~dqv~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i 151 (607)
T PRK11057 77 LMKDQVDQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCI 151 (607)
T ss_pred HHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccc
Confidence 999999998763 6888888888888777777888889999999999998763 233457899999999985
Q ss_pred c---h------hhHHHHhhhcCCceEEEeecCCChhhHHHHH--hcCCCcceecCCCCCccceeEEeccc--CHHHHHHH
Q 003260 418 G---V------KQKEKIASFKISVDVLTLSATPIPRTLYLAL--TGFRDASLISTPPPERLPIKTHLSAF--SKEKVISA 484 (835)
Q Consensus 418 g---~------~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~--~g~~d~s~I~~~p~~r~~v~~~~~~~--~~~~l~~~ 484 (835)
. . .....+....++.+++++|||+.+....... .++.++.+.. ....+..+...+... ....+...
T Consensus 152 ~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~~~~r~nl~~~v~~~~~~~~~l~~~ 230 (607)
T PRK11057 152 SQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFDRPNIRYTLVEKFKPLDQLMRY 230 (607)
T ss_pred ccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-CCCCCCcceeeeeeccchHHHHHHH
Confidence 3 1 1223344445788999999999876544322 2333333222 222222222211111 11222222
Q ss_pred HHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCcc
Q 003260 485 IKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564 (835)
Q Consensus 485 i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~ 564 (835)
+.. ..+.+++|||+++++++.+++.|... ++.+..+||+|++.+|+.+++.|.+|+++|||||+++++|||+|+++
T Consensus 231 l~~--~~~~~~IIFc~tr~~~e~la~~L~~~--g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~ 306 (607)
T PRK11057 231 VQE--QRGKSGIIYCNSRAKVEDTAARLQSR--GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVR 306 (607)
T ss_pred HHh--cCCCCEEEEECcHHHHHHHHHHHHhC--CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcC
Confidence 221 35678999999999999999999988 88999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 565 ~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+||+++.|. ++.+|+|++||+||.|..|.|++|+++.+
T Consensus 307 ~VI~~d~P~-s~~~y~Qr~GRaGR~G~~~~~ill~~~~d 344 (607)
T PRK11057 307 FVVHFDIPR-NIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (607)
T ss_pred EEEEeCCCC-CHHHHHHHhhhccCCCCCceEEEEeCHHH
Confidence 999999997 99999999999999999999999998765
No 29
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=8.5e-40 Score=359.47 Aligned_cols=346 Identities=21% Similarity=0.260 Sum_probs=280.6
Q ss_pred HHHHHHHHHHHHHHH---ccCCCCCCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHH
Q 003260 244 QKMVVDLMELYLHRL---KQKRPPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319 (835)
Q Consensus 244 ~~~~~~l~~l~~~r~---~~~~~~~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~v 319 (835)
++...++...|+.-. ......+|.+. ..+.+.+..+..+|.+|+.+|+..+. ++|+|..+-||||||++
T Consensus 50 ee~i~~l~~ky~ei~~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~-------G~DvlGAAkTGSGKTLA 122 (758)
T KOG0343|consen 50 EEEIEELKQKYAEIDSTTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQ-------GHDVLGAAKTGSGKTLA 122 (758)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhcc-------CcccccccccCCCceee
Confidence 444455555554432 22334567766 78899999999999999999998875 68999999999999999
Q ss_pred HHHHHHHHHc-------CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeec
Q 003260 320 ALRAIFCVVS-------AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392 (835)
Q Consensus 320 al~a~l~~l~-------~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVg 392 (835)
|+.|++..+- +|.-+||+.|||+||.|+++.+.+ .+.+.+++.+++.|+...+.-...+ .+++|+||
T Consensus 123 FlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~k-vgk~h~fSaGLiiGG~~~k~E~eRi-----~~mNILVC 196 (758)
T KOG0343|consen 123 FLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNK-VGKHHDFSAGLIIGGKDVKFELERI-----SQMNILVC 196 (758)
T ss_pred ehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHH-HhhccccccceeecCchhHHHHHhh-----hcCCeEEe
Confidence 9999998863 467899999999999999999986 7888789999999997754432222 45899999
Q ss_pred cHHHhhccc------ccCCccEEEEcCcccc---chh--hHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecC
Q 003260 393 THSLLGSRV------VYNNLGLLVVDEEQRF---GVK--QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 461 (835)
Q Consensus 393 T~~~L~~~l------~~~~l~llVIDEaHr~---g~~--~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~ 461 (835)
||++|..++ .-.++.++|+|||+++ |+. ....+..+++..|++++|||+...+-.++...+.|+..|.+
T Consensus 197 TPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsv 276 (758)
T KOG0343|consen 197 TPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSV 276 (758)
T ss_pred chHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEE
Confidence 999887543 3468899999999984 663 24556778899999999999998888888888888887765
Q ss_pred CCCC--cc--ceeEEecccCHHHHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHH
Q 003260 462 PPPE--RL--PIKTHLSAFSKEKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEE 535 (835)
Q Consensus 462 ~p~~--r~--~v~~~~~~~~~~~l~~~i~~~l~--~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~ 535 (835)
-... -. ....++........++.+-.-+. ...+.|||+.+.+.+..+++.+..+-||..+..+||+|++..|..
T Consensus 277 he~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~e 356 (758)
T KOG0343|consen 277 HENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIE 356 (758)
T ss_pred eccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHH
Confidence 3211 11 12233333333344444444333 246899999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 536 TMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 536 vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
++.+|.....-||+||+++++|+|+|.|+.||.+|+|. +.++|+||+||+.|.+..|.|+++..+.+
T Consensus 357 v~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPe-dv~tYIHRvGRtAR~~~~G~sll~L~psE 423 (758)
T KOG0343|consen 357 VYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPE-DVDTYIHRVGRTARYKERGESLLMLTPSE 423 (758)
T ss_pred HHHHHHHhcceEEEeehhhhccCCCcccceEEEecCch-hHHHHHHHhhhhhcccCCCceEEEEcchh
Confidence 99999999999999999999999999999999999997 99999999999999999999999998763
No 30
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=5.3e-39 Score=381.07 Aligned_cols=311 Identities=22% Similarity=0.249 Sum_probs=247.7
Q ss_pred HHHHHhCCC-CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHH
Q 003260 272 AEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 350 (835)
Q Consensus 272 ~~~~~~f~~-~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~ 350 (835)
+.+++.|+| +++|.|.+||+.+++ ++|+++++|||+|||++|++|++. .+..++|++|+++|+.|+++.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~-------g~dvlv~~PTG~GKTl~y~lpal~---~~g~~lVisPl~sL~~dq~~~ 72 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLD-------GRDVLVVMPTGGGKSLCYQVPALL---LKGLTVVISPLISLMKDQVDQ 72 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHc-------CCCEEEEcCCCccHhHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHH
Confidence 456777888 799999999999985 468999999999999999988874 356789999999999999999
Q ss_pred HHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCccccc---hh--
Q 003260 351 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFG---VK-- 420 (835)
Q Consensus 351 ~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaHr~g---~~-- 420 (835)
++.. |+.+..+++..+..+....+..+..|.++|+++||+.|.. .+...++++|||||||.+. ..
T Consensus 73 l~~~-----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~fr 147 (591)
T TIGR01389 73 LRAA-----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFR 147 (591)
T ss_pred HHHc-----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccH
Confidence 8863 6889999999998888888889999999999999998854 2345789999999999853 21
Q ss_pred ----hHHHHhhhcCCceEEEeecCCChhhHHHHHhc--CCCcceecCCCCCccceeEEecc-cC-HHHHHHHHHHHHhcC
Q 003260 421 ----QKEKIASFKISVDVLTLSATPIPRTLYLALTG--FRDASLISTPPPERLPIKTHLSA-FS-KEKVISAIKYELDRG 492 (835)
Q Consensus 421 ----~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g--~~d~s~I~~~p~~r~~v~~~~~~-~~-~~~l~~~i~~~l~~g 492 (835)
....+....++.+++++|||+.+.+....... +.+...+.. ...+..+...+.. .. ...+.+.+.. ..+
T Consensus 148 p~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~~~~~l~~~l~~--~~~ 224 (591)
T TIGR01389 148 PEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFIT-SFDRPNLRFSVVKKNNKQKFLLDYLKK--HRG 224 (591)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec-CCCCCCcEEEEEeCCCHHHHHHHHHHh--cCC
Confidence 12223333456679999999988776544332 233333322 2223222222211 11 2223333322 125
Q ss_pred CeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCC
Q 003260 493 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 572 (835)
Q Consensus 493 gqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p 572 (835)
.+.+|||++++.++.+++.|... ++.+..+||+|+.++|+.+++.|.+|+++|||||+++++|||+|++++||++++|
T Consensus 225 ~~~IIf~~sr~~~e~la~~L~~~--g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p 302 (591)
T TIGR01389 225 QSGIIYASSRKKVEELAERLESQ--GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMP 302 (591)
T ss_pred CCEEEEECcHHHHHHHHHHHHhC--CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCC
Confidence 78999999999999999999887 8899999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 573 QFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 573 ~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
. ++.+|+|++||+||.|..|.|+++|++.+
T Consensus 303 ~-s~~~y~Q~~GRaGR~G~~~~~il~~~~~d 332 (591)
T TIGR01389 303 G-NLESYYQEAGRAGRDGLPAEAILLYSPAD 332 (591)
T ss_pred C-CHHHHhhhhccccCCCCCceEEEecCHHH
Confidence 7 99999999999999999999999988654
No 31
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=6.5e-40 Score=358.39 Aligned_cols=324 Identities=22% Similarity=0.279 Sum_probs=264.2
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-------CCEEEE
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-------GKQAMV 336 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-------g~qvlV 336 (835)
++.++ ..+++.+.++-.+|++|..+|+.++. ++|+|+.|-||+|||++|++|+++.+.. +-.|+|
T Consensus 87 ~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~-------gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlI 159 (543)
T KOG0342|consen 87 GSLSPLTLKAIKEMGFETMTPVQQKTIPPLLE-------GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLI 159 (543)
T ss_pred cccCHHHHHHHHhcCccchhHHHHhhcCccCC-------CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEE
Confidence 34555 77899999999999999999999874 4699999999999999999999988743 457999
Q ss_pred EcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc------ccCCccEEE
Q 003260 337 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV------VYNNLGLLV 410 (835)
Q Consensus 337 LvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l------~~~~l~llV 410 (835)
++|||+||.|++.+.++.+...+++.|+++.|+..... .-+.+.+| ++|+|+||++|.+.+ .++++.++|
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~---e~~kl~k~-~niliATPGRLlDHlqNt~~f~~r~~k~lv 235 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSV---EADKLVKG-CNILIATPGRLLDHLQNTSGFLFRNLKCLV 235 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchH---HHHHhhcc-ccEEEeCCchHHhHhhcCCcchhhccceeE
Confidence 99999999999999999887777899999999865433 22345555 999999999997643 467889999
Q ss_pred EcCcccc---chh--hHHHHhhhcCCceEEEeecCCChhhHHHHHhcCC-CcceecCCCCCccc----eeE-EecccCH-
Q 003260 411 VDEEQRF---GVK--QKEKIASFKISVDVLTLSATPIPRTLYLALTGFR-DASLISTPPPERLP----IKT-HLSAFSK- 478 (835)
Q Consensus 411 IDEaHr~---g~~--~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~-d~s~I~~~p~~r~~----v~~-~~~~~~~- 478 (835)
+||||++ |+. ....+..++...|.+++|||.++.....+...+. ++..+.....+..+ +.. ++.....
T Consensus 236 lDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~ 315 (543)
T KOG0342|consen 236 LDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS 315 (543)
T ss_pred eecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc
Confidence 9999984 553 3455667788999999999999888777765543 45555554333221 222 2222222
Q ss_pred --HHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCc
Q 003260 479 --EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556 (835)
Q Consensus 479 --~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~ 556 (835)
..+...+.+... ..+++|||++...+..+++.|... ++.|.-+||++++..|..+...|++.+.-|||||++++|
T Consensus 316 ~f~ll~~~LKk~~~-~~KiiVF~sT~~~vk~~~~lL~~~--dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaAR 392 (543)
T KOG0342|consen 316 RFSLLYTFLKKNIK-RYKIIVFFSTCMSVKFHAELLNYI--DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAAR 392 (543)
T ss_pred hHHHHHHHHHHhcC-CceEEEEechhhHHHHHHHHHhhc--CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhc
Confidence 223444444433 389999999999999999999977 899999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 557 GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|+|+|+|+.||.+|.|. ++.+|+||+||+||.|+.|.++++..+.+
T Consensus 393 GlD~P~V~~VvQ~~~P~-d~~~YIHRvGRTaR~gk~G~alL~l~p~E 438 (543)
T KOG0342|consen 393 GLDIPDVDWVVQYDPPS-DPEQYIHRVGRTAREGKEGKALLLLAPWE 438 (543)
T ss_pred cCCCCCceEEEEeCCCC-CHHHHHHHhccccccCCCceEEEEeChhH
Confidence 99999999999999998 99999999999999999999999998764
No 32
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.4e-39 Score=394.69 Aligned_cols=411 Identities=21% Similarity=0.241 Sum_probs=276.2
Q ss_pred CCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHH
Q 003260 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLA 344 (835)
Q Consensus 266 ~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA 344 (835)
+.++ +.+.+.+.+..+|+|+|.+|++..+. .++|+++++|||||||++|.++++..+..+++++|++|+++||
T Consensus 7 ~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~------~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa 80 (737)
T PRK02362 7 PLPEGVIEFYEAEGIEELYPPQAEAVEAGLL------DGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALA 80 (737)
T ss_pred CCCHHHHHHHHhCCCCcCCHHHHHHHHHHHh------CCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHH
Confidence 3444 77788887777999999999987432 1579999999999999999999999988889999999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----cccCCccEEEEcCccccch
Q 003260 345 KQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFGV 419 (835)
Q Consensus 345 ~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l~~~~l~llVIDEaHr~g~ 419 (835)
.|+++.|+. |..+ |++|..++|+.+... .. -+..+|+|+||+.+... ..+.++++|||||+|.++.
T Consensus 81 ~q~~~~~~~-~~~~-g~~v~~~tGd~~~~~--~~-----l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d 151 (737)
T PRK02362 81 SEKFEEFER-FEEL-GVRVGISTGDYDSRD--EW-----LGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDS 151 (737)
T ss_pred HHHHHHHHH-hhcC-CCEEEEEeCCcCccc--cc-----cCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCC
Confidence 999999985 7665 799999998754332 11 14589999999876431 2357899999999998754
Q ss_pred hh----H----HHHhhhcCCceEEEeecCCCh-hhHHHHHhcCCCcceecCCCCCccceeE---------------Eecc
Q 003260 420 KQ----K----EKIASFKISVDVLTLSATPIP-RTLYLALTGFRDASLISTPPPERLPIKT---------------HLSA 475 (835)
Q Consensus 420 ~~----~----e~l~~l~~~~~vL~lSATp~p-~tl~~~~~g~~d~s~I~~~p~~r~~v~~---------------~~~~ 475 (835)
.. . ..+.....+.|+|++|||+.. +.+..++ +...+... ....+... .+..
T Consensus 152 ~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl----~~~~~~~~-~rpv~l~~~v~~~~~~~~~~~~~~~~~ 226 (737)
T PRK02362 152 ANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWL----DAELVDSE-WRPIDLREGVFYGGAIHFDDSQREVEV 226 (737)
T ss_pred CcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHh----CCCcccCC-CCCCCCeeeEecCCeeccccccccCCC
Confidence 21 1 223344578999999999743 3332222 11111100 00000000 0000
Q ss_pred cCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC----------------------------------CCeE
Q 003260 476 FSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP----------------------------------GVDI 521 (835)
Q Consensus 476 ~~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p----------------------------------~~~v 521 (835)
.........+...+..+++++|||+++..++.++..|..... ...|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gv 306 (737)
T PRK02362 227 PSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGA 306 (737)
T ss_pred ccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCE
Confidence 111345556666677889999999999999988888765421 1368
Q ss_pred EEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEE----ecC----CCCChhHHHHHhcccCCCCC--
Q 003260 522 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV----QDV----QQFGLAQLYQLRGRVGRADK-- 591 (835)
Q Consensus 522 ~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi----~d~----p~~sl~~l~Qr~GRaGR~g~-- 591 (835)
+++||+|++.+|+.+++.|++|.++|||||+++++|||+|..++||. |+. ..++..+|.||+|||||.|.
T Consensus 307 a~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~ 386 (737)
T PRK02362 307 AFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDP 386 (737)
T ss_pred EeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCC
Confidence 99999999999999999999999999999999999999998887775 442 23578999999999999985
Q ss_pred ceEEEEEecCCCcCCHHHHHHHH--------------HHHHH--hhcccchhhhhhhhccccCCCcccccccCCcccchH
Q 003260 592 EAHAYLFYPDKSLLSDQALERLA--------------ALEEC--RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGV 655 (835)
Q Consensus 592 ~G~ay~l~~~~~~~~~~a~~rl~--------------~i~~~--~~l~sg~~la~~dl~irg~g~~lg~~q~g~~~~vg~ 655 (835)
.|.|++++.+.+...+...+-+. .+..+ ..+..|......|+. .-..+.|...|.+. .
T Consensus 387 ~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~-~~l~~Tf~~~~~~~-----~ 460 (737)
T PRK02362 387 YGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLL-EFLEATFYATQTDD-----T 460 (737)
T ss_pred CceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHH-HHHHhChHHhhccc-----h
Confidence 49999999764211111111110 00000 011111111111110 00112222222211 1
Q ss_pred HHHHHHHHHHHhccc--------ccccccccCcceEEeeecCCCCccccccccCC
Q 003260 656 DLFFEMLFESLSKVD--------EHCVISVPYKSVQIDININPRLPSEYINHLEN 702 (835)
Q Consensus 656 ~~y~~~l~~ai~~~~--------~~~~~~~~~g~~~~~l~idp~~~~~~i~~~~~ 702 (835)
+.+.++++.++..+. ++.+..|++|.+++..|++|.....++.+.+.
T Consensus 461 ~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~ 515 (737)
T PRK02362 461 GRLERVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYIDPLSAAEIIDGLEA 515 (737)
T ss_pred HHHHHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHHHHHHHHHhhh
Confidence 234455666666554 22344678999999999999999888776543
No 33
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.3e-40 Score=348.26 Aligned_cols=333 Identities=21% Similarity=0.284 Sum_probs=268.7
Q ss_pred hHHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc---------CCCEEEEEcc
Q 003260 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---------AGKQAMVLAP 339 (835)
Q Consensus 269 ~l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~---------~g~qvlVLvP 339 (835)
++++++.+.++-.|||+|.+|||.+++ +.|++.++.||+|||++||+|.+-.+. .++.+|++.|
T Consensus 230 evmenIkK~GFqKPtPIqSQaWPI~LQ-------G~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~p 302 (629)
T KOG0336|consen 230 EVMENIKKTGFQKPTPIQSQAWPILLQ-------GIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTP 302 (629)
T ss_pred HHHHHHHhccCCCCCcchhcccceeec-------CcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEec
Confidence 377888888888999999999999986 579999999999999999998875542 3678999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCc
Q 003260 340 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEE 414 (835)
Q Consensus 340 tr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEa 414 (835)
|++||.|+.-+..+. . +.|.+...+.|+.+. .++++.++.| ++|+|+||++|.+ .+.+.++.+||+|||
T Consensus 303 treLalqie~e~~ky-s-yng~ksvc~ygggnR---~eqie~lkrg-veiiiatPgrlndL~~~n~i~l~siTYlVlDEA 376 (629)
T KOG0336|consen 303 TRELALQIEGEVKKY-S-YNGLKSVCVYGGGNR---NEQIEDLKRG-VEIIIATPGRLNDLQMDNVINLASITYLVLDEA 376 (629)
T ss_pred cHHHHHHHHhHHhHh-h-hcCcceEEEecCCCc---hhHHHHHhcC-ceEEeeCCchHhhhhhcCeeeeeeeEEEEecch
Confidence 999999998887753 2 335665556655443 4466777777 9999999998865 356788999999999
Q ss_pred ccc---ch--hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCccc---eeEEec-ccCH--HHHHH
Q 003260 415 QRF---GV--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP---IKTHLS-AFSK--EKVIS 483 (835)
Q Consensus 415 Hr~---g~--~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~~---v~~~~~-~~~~--~~l~~ 483 (835)
|+| |+ ..+..+...+++.++++.|||.++....++..++.++.++......... |...+. ..+. -.+..
T Consensus 377 DrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~ 456 (629)
T KOG0336|consen 377 DRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQ 456 (629)
T ss_pred hhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHH
Confidence 985 55 3456677889999999999999998889999999888777665443322 222222 2222 23444
Q ss_pred HHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCc
Q 003260 484 AIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563 (835)
Q Consensus 484 ~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v 563 (835)
.+........++++||.++.-++.+...+.-. ++.+-.+||+-.+.+|+..++.|++|+++|||||+++.+|+|+|++
T Consensus 457 ~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~--gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~Di 534 (629)
T KOG0336|consen 457 FFVANMSSNDKVIIFVSRKVMADHLSSDFCLK--GISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDI 534 (629)
T ss_pred HHHHhcCCCceEEEEEechhhhhhccchhhhc--ccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhc
Confidence 55555667789999999988888777776654 8889999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHH
Q 003260 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619 (835)
Q Consensus 564 ~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~ 619 (835)
++|++||.|+ +++.|+||+||+||+|+.|.++.|.+..+ ...+.+-++.+++.
T Consensus 535 THV~NyDFP~-nIeeYVHRvGrtGRaGr~G~sis~lt~~D--~~~a~eLI~ILe~a 587 (629)
T KOG0336|consen 535 THVYNYDFPR-NIEEYVHRVGRTGRAGRTGTSISFLTRND--WSMAEELIQILERA 587 (629)
T ss_pred ceeeccCCCc-cHHHHHHHhcccccCCCCcceEEEEehhh--HHHHHHHHHHHHHh
Confidence 9999999998 99999999999999999999999998765 34555656555554
No 34
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=9.9e-40 Score=394.62 Aligned_cols=388 Identities=17% Similarity=0.216 Sum_probs=279.6
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecC
Q 003260 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR 368 (835)
Q Consensus 289 AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g 368 (835)
+.+.|++.+.+ +.+++++|+||||||+++.++++.....+.+++|++|||++|.|+++++.+.++...|..|++..+
T Consensus 9 ~~~~i~~~l~~---~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr 85 (812)
T PRK11664 9 VLPELLTALKT---APQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMR 85 (812)
T ss_pred HHHHHHHHHHh---CCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEec
Confidence 44556655532 468999999999999999999887654456999999999999999999987787767889999888
Q ss_pred CCCHHHHHHHHHhhhcCCcceeeccHHHhhc----ccccCCccEEEEcCccccchhh-------HHHHhhhcCCceEEEe
Q 003260 369 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRFGVKQ-------KEKIASFKISVDVLTL 437 (835)
Q Consensus 369 ~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~----~l~~~~l~llVIDEaHr~g~~~-------~e~l~~l~~~~~vL~l 437 (835)
+.+... ...+|+|+|++.|.+ +..+.++++|||||+|+.+... .+.+..++.+.++|+|
T Consensus 86 ~~~~~~----------~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilm 155 (812)
T PRK11664 86 AESKVG----------PNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIM 155 (812)
T ss_pred CccccC----------CCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEE
Confidence 754321 236799999997764 4567899999999999853321 2233445778999999
Q ss_pred ecCCChhhHHHHHhcCCCcceecCCCCCccceeEEecccCHHH-----HHHHHHHHHh-cCCeEEEEecCccChHHHHHH
Q 003260 438 SATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEK-----VISAIKYELD-RGGQVFYVLPRIKGLEEPMDF 511 (835)
Q Consensus 438 SATp~p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~~~~~~~~-----l~~~i~~~l~-~ggqvlVf~n~v~~~e~l~~~ 511 (835)
|||+....+ ..++.+..++..+ ...+++..++....... +...+...+. .+++++||+|+..+++.+++.
T Consensus 156 SATl~~~~l---~~~~~~~~~I~~~-gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~ 231 (812)
T PRK11664 156 SATLDNDRL---QQLLPDAPVIVSE-GRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQ 231 (812)
T ss_pred ecCCCHHHH---HHhcCCCCEEEec-CccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHH
Confidence 999976543 2344455555443 34456766654433221 2223444443 368999999999999999999
Q ss_pred HHhhC-CCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCC---C-------------
Q 003260 512 LQQAF-PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ---F------------- 574 (835)
Q Consensus 512 L~~~~-p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~---~------------- 574 (835)
|.+.+ .++.+..+||+|+..+|+.++..|.+|+.+|||||+++++|||||+|++||+++.++ |
T Consensus 232 L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~ 311 (812)
T PRK11664 232 LASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQR 311 (812)
T ss_pred HHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEe
Confidence 99743 478899999999999999999999999999999999999999999999999987653 1
Q ss_pred -ChhHHHHHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccc
Q 003260 575 -GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNV 653 (835)
Q Consensus 575 -sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dl~irg~g~~lg~~q~g~~~~v 653 (835)
|.+++.||+||+||. .+|.||.+|++++... ......++|.+.+. +.+.+..+.+ |..+......-..+...
T Consensus 312 iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~-l~~~~~PEI~r~dL--~~~~L~l~~~---g~~~~~~~~~ld~P~~~ 384 (812)
T PRK11664 312 ISQASMTQRAGRAGRL-EPGICLHLYSKEQAER-AAAQSEPEILHSDL--SGLLLELLQW---GCHDPAQLSWLDQPPAA 384 (812)
T ss_pred echhhhhhhccccCCC-CCcEEEEecCHHHHhh-CccCCCCceeccch--HHHHHHHHHc---CCCCHHhCCCCCCCCHH
Confidence 346899999999999 6999999998765422 22223344544432 3455544443 33333333333334333
Q ss_pred hHHHHHHHHHHHHhcccccccccccCcceEEeeecCCCCccccccccCC
Q 003260 654 GVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLEN 702 (835)
Q Consensus 654 g~~~y~~~l~~ai~~~~~~~~~~~~~g~~~~~l~idp~~~~~~i~~~~~ 702 (835)
.++--.+.|. .+..++.+. ..|+.|..++.+|++|.+++.++.+.+.
T Consensus 385 ~~~~A~~~L~-~lgald~~g-~lT~~G~~m~~lp~~Prla~~ll~a~~~ 431 (812)
T PRK11664 385 ALAAAKRLLQ-QLGALDGQG-RLTARGRKMAALGNDPRLAAMLVAAKED 431 (812)
T ss_pred HHHHHHHHHH-HCCCCCCCC-CcCHHHHHHHhcCCchHHHHHHHHHHhc
Confidence 3333333332 344454433 4578999999999999999999987554
No 35
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=7.9e-38 Score=374.08 Aligned_cols=315 Identities=31% Similarity=0.378 Sum_probs=256.9
Q ss_pred HhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhh
Q 003260 276 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 276 ~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f 355 (835)
...++.+|+.|.+|++.+.+++ ..++++++|+||||||++|+.++...+..|++++||+||++|+.|++++|++.|
T Consensus 139 ~~~~~~Lt~~Q~~ai~~i~~~~----~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 139 AFEPPTLNPEQAAAVEAIRAAA----GFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred ccCCCCCCHHHHHHHHHHHhcc----CCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 3456789999999999998743 246799999999999999999988888889999999999999999999999876
Q ss_pred cCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHH----------HH
Q 003260 356 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE----------KI 425 (835)
Q Consensus 356 ~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e----------~l 425 (835)
|.++..++++.+..++...|..+.+|+++|+|||++.+. .++.++++|||||+|.+++.+.+ .+
T Consensus 215 ----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ 288 (679)
T PRK05580 215 ----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVV 288 (679)
T ss_pred ----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--ccccCCCEEEEECCCccccccCcCCCCcHHHHHHH
Confidence 468999999999999999999999999999999999886 56899999999999998765421 12
Q ss_pred hhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCc-cc-eeEEec---------ccCHHHHHHHHHHHHhcCCe
Q 003260 426 ASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER-LP-IKTHLS---------AFSKEKVISAIKYELDRGGQ 494 (835)
Q Consensus 426 ~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r-~~-v~~~~~---------~~~~~~l~~~i~~~l~~ggq 494 (835)
.....+.++|++||||+.+++..+..|......+...+... .| +...-. ..-...+++.+.+.++++.|
T Consensus 289 ra~~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~q 368 (679)
T PRK05580 289 RAKLENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQ 368 (679)
T ss_pred HhhccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCe
Confidence 33457889999999999999988877654433332222111 11 111100 01124678889999999999
Q ss_pred EEEEecCc------------------------------------------------------------cChHHHHHHHHh
Q 003260 495 VFYVLPRI------------------------------------------------------------KGLEEPMDFLQQ 514 (835)
Q Consensus 495 vlVf~n~v------------------------------------------------------------~~~e~l~~~L~~ 514 (835)
+++|+|++ .+++.+++.|++
T Consensus 369 vll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~ 448 (679)
T PRK05580 369 VLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAE 448 (679)
T ss_pred EEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHH
Confidence 99998862 146789999999
Q ss_pred hCCCCeEEEEeCCCC--HHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCC-----------ChhHHHH
Q 003260 515 AFPGVDIAIAHGQQY--SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF-----------GLAQLYQ 581 (835)
Q Consensus 515 ~~p~~~v~~lhg~m~--~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~-----------sl~~l~Q 581 (835)
.||++++..+|+++. ..++++++++|++|+.+|||+|+++++|+|+|++++|++.|++.. ....|+|
T Consensus 449 ~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q 528 (679)
T PRK05580 449 LFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQ 528 (679)
T ss_pred hCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHH
Confidence 999999999999986 467999999999999999999999999999999999988877631 1357899
Q ss_pred HhcccCCCCCceEEEEEec
Q 003260 582 LRGRVGRADKEAHAYLFYP 600 (835)
Q Consensus 582 r~GRaGR~g~~G~ay~l~~ 600 (835)
++||+||.++.|.+++...
T Consensus 529 ~~GRagR~~~~g~viiqT~ 547 (679)
T PRK05580 529 VAGRAGRAEKPGEVLIQTY 547 (679)
T ss_pred HHhhccCCCCCCEEEEEeC
Confidence 9999999999999997554
No 36
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-39 Score=359.54 Aligned_cols=334 Identities=25% Similarity=0.334 Sum_probs=257.6
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-------------CCEEEE
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-------------GKQAMV 336 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-------------g~qvlV 336 (835)
+...+....+-.|||+|+.+|+.+.. ++|.++||+||||||.+|++|++..+.. .++++|
T Consensus 85 l~~ni~~~~~~~ptpvQk~sip~i~~-------Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lI 157 (482)
T KOG0335|consen 85 LAGNIKRSGYTKPTPVQKYSIPIISG-------GRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALI 157 (482)
T ss_pred HhhccccccccCCCcceeeccceeec-------CCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEE
Confidence 34445556667999999999999864 6899999999999999999999987642 378999
Q ss_pred EcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEE
Q 003260 337 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVV 411 (835)
Q Consensus 337 LvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVI 411 (835)
|+|||+||.|+|++.++ |....++++...+|+.+... +...+.+| +||+|+||+.|.+ .+.+.+++++|+
T Consensus 158 lapTReL~~Qi~nea~k-~~~~s~~~~~~~ygg~~~~~---q~~~~~~g-cdIlvaTpGrL~d~~e~g~i~l~~~k~~vL 232 (482)
T KOG0335|consen 158 LAPTRELVDQIYNEARK-FSYLSGMKSVVVYGGTDLGA---QLRFIKRG-CDILVATPGRLKDLIERGKISLDNCKFLVL 232 (482)
T ss_pred EeCcHHHhhHHHHHHHh-hcccccceeeeeeCCcchhh---hhhhhccC-ccEEEecCchhhhhhhcceeehhhCcEEEe
Confidence 99999999999999987 66666789999999865544 44555666 9999999999975 456788999999
Q ss_pred cCcccc----ch-hhHHHHh-hh----cCCceEEEeecCCChhhHHHHHhcCCC-cceecCCC--CCccceeEEecccCH
Q 003260 412 DEEQRF----GV-KQKEKIA-SF----KISVDVLTLSATPIPRTLYLALTGFRD-ASLISTPP--PERLPIKTHLSAFSK 478 (835)
Q Consensus 412 DEaHr~----g~-~~~e~l~-~l----~~~~~vL~lSATp~p~tl~~~~~g~~d-~s~I~~~p--~~r~~v~~~~~~~~~ 478 (835)
|||++| |+ .+.+++. .. ....|.++||||.+.....++..+..+ ...+.+.- .....+...+....+
T Consensus 233 DEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~ 312 (482)
T KOG0335|consen 233 DEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNE 312 (482)
T ss_pred cchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecc
Confidence 999986 33 3334433 32 247899999999877666666666555 33333221 112223333333333
Q ss_pred HHHHHHHHHHHh------cCC-----eEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeE
Q 003260 479 EKVISAIKYELD------RGG-----QVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKI 547 (835)
Q Consensus 479 ~~l~~~i~~~l~------~gg-----qvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~I 547 (835)
...+..+...+. ..+ .++|||.+++.+..++..|... ++....+||..++.+|++.++.|++|.+.|
T Consensus 313 ~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~--~~~~~sIhg~~tq~er~~al~~Fr~g~~pv 390 (482)
T KOG0335|consen 313 MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN--GYPAKSIHGDRTQIEREQALNDFRNGKAPV 390 (482)
T ss_pred hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC--CCCceeecchhhhhHHHHHHHHhhcCCcce
Confidence 334444444442 123 7999999999999999999988 889999999999999999999999999999
Q ss_pred EEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHh
Q 003260 548 LICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620 (835)
Q Consensus 548 LVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~ 620 (835)
||||+++++|+|||+|++||+||+|. +..+|+||+||+||.|..|.+..|++... ...+..-.+.|.++.
T Consensus 391 lVaT~VaaRGlDi~~V~hVInyDmP~-d~d~YvHRIGRTGR~Gn~G~atsf~n~~~--~~i~~~L~~~l~ea~ 460 (482)
T KOG0335|consen 391 LVATNVAARGLDIPNVKHVINYDMPA-DIDDYVHRIGRTGRVGNGGRATSFFNEKN--QNIAKALVEILTEAN 460 (482)
T ss_pred EEEehhhhcCCCCCCCceeEEeecCc-chhhHHHhccccccCCCCceeEEEecccc--chhHHHHHHHHHHhc
Confidence 99999999999999999999999998 79999999999999999999999998443 333333344445543
No 37
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.1e-39 Score=389.58 Aligned_cols=385 Identities=18% Similarity=0.234 Sum_probs=276.0
Q ss_pred HHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q 003260 291 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQ 370 (835)
Q Consensus 291 ~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~ 370 (835)
+.+++.+.+ +.++|++|+||||||+++..+++.....+.+++|++|||++|.|+++++.+.++...|..|++..++.
T Consensus 8 ~~i~~~l~~---~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~ 84 (819)
T TIGR01970 8 PALRDALAA---HPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGE 84 (819)
T ss_pred HHHHHHHHc---CCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccc
Confidence 444444422 46899999999999999999998876667899999999999999999998778766678899888865
Q ss_pred CHHHHHHHHHhhhcCCcceeeccHHHhhc----ccccCCccEEEEcCcccc------chhh-HHHHhhhcCCceEEEeec
Q 003260 371 SKAEKEEHLDMIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRF------GVKQ-KEKIASFKISVDVLTLSA 439 (835)
Q Consensus 371 s~~e~~~~l~~l~~G~~dIIVgT~~~L~~----~l~~~~l~llVIDEaHr~------g~~~-~e~l~~l~~~~~vL~lSA 439 (835)
+.. +.+.+|+|+|++.|.+ +..+.++++|||||+|+. +... .+....++.+.++|+|||
T Consensus 85 ~~~----------s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSA 154 (819)
T TIGR01970 85 NKV----------SRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSA 154 (819)
T ss_pred ccc----------CCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeC
Confidence 321 1347899999997764 345789999999999962 1212 222334577899999999
Q ss_pred CCChhhHHHHHhcCCCcceecCCCCCccceeEEecccCHH-H----HHHHHHHHHh-cCCeEEEEecCccChHHHHHHHH
Q 003260 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKE-K----VISAIKYELD-RGGQVFYVLPRIKGLEEPMDFLQ 513 (835)
Q Consensus 440 Tp~p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~~~~~~~-~----l~~~i~~~l~-~ggqvlVf~n~v~~~e~l~~~L~ 513 (835)
|+....+ ..++.+..++..+ ...+++..++...... . +...+...+. .++++|||+|+..+++.+++.|.
T Consensus 155 Tl~~~~l---~~~l~~~~vI~~~-gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~ 230 (819)
T TIGR01970 155 TLDGERL---SSLLPDAPVVESE-GRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLA 230 (819)
T ss_pred CCCHHHH---HHHcCCCcEEEec-CcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH
Confidence 9976553 2344455666543 3456777665543321 1 2233343333 36899999999999999999998
Q ss_pred hhC-CCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCC---C--------------C
Q 003260 514 QAF-PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ---F--------------G 575 (835)
Q Consensus 514 ~~~-p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~---~--------------s 575 (835)
+.+ +++.+.++||+|++++|..+++.|.+|..+|||||+++++|||||+|++||+++.++ | |
T Consensus 231 ~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iS 310 (819)
T TIGR01970 231 ERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRIS 310 (819)
T ss_pred hhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEEC
Confidence 754 478999999999999999999999999999999999999999999999999998764 2 3
Q ss_pred hhHHHHHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchH
Q 003260 576 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGV 655 (835)
Q Consensus 576 l~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dl~irg~g~~lg~~q~g~~~~vg~ 655 (835)
.+++.||+||+||. ++|.||.+|++++... ......++|.+.+. +++.+..+.+ |..+......-..+....+
T Consensus 311 kasa~QR~GRAGR~-~~G~cyrL~t~~~~~~-l~~~~~PEI~r~~L--~~~~L~l~~~---g~~~~~~~~~l~~P~~~~i 383 (819)
T TIGR01970 311 QASATQRAGRAGRL-EPGVCYRLWSEEQHQR-LPAQDEPEILQADL--SGLALELAQW---GAKDPSDLRWLDAPPSVAL 383 (819)
T ss_pred HHHHHhhhhhcCCC-CCCEEEEeCCHHHHHh-hhcCCCcceeccCc--HHHHHHHHHc---CCCChhhCCCCCCcCHHHH
Confidence 45689999999999 7999999998764321 12222333443322 3455555544 4444333333333333333
Q ss_pred HHHHHHHHHHHhcccccccccccCcceEEeeecCCCCccccccccC
Q 003260 656 DLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 701 (835)
Q Consensus 656 ~~y~~~l~~ai~~~~~~~~~~~~~g~~~~~l~idp~~~~~~i~~~~ 701 (835)
..-.+.|. .+.+++.+. ..|++|..++.+|+||.+++.++.+..
T Consensus 384 ~~a~~~L~-~lgald~~~-~lT~~G~~~~~lp~~p~l~~~ll~~~~ 427 (819)
T TIGR01970 384 AAARQLLQ-RLGALDAQG-RLTAHGKAMAALGCHPRLAAMLLSAHS 427 (819)
T ss_pred HHHHHHHH-HCCCCCCCC-CcCHHHHHHHhcCCCHHHHHHHHHhhh
Confidence 33333332 344444332 358899999999999999999887644
No 38
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.6e-37 Score=380.89 Aligned_cols=316 Identities=20% Similarity=0.248 Sum_probs=234.6
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc---------CCCEEEEEccc
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---------AGKQAMVLAPT 340 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~---------~g~qvlVLvPt 340 (835)
+.+.|.+. ...|||+|.+|++.+++ ++|+|+++|||||||++|++|++..+. .+.+++|++||
T Consensus 22 v~~~~~~~-~~~~tpiQ~~Ai~~il~-------g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPt 93 (876)
T PRK13767 22 VREWFKEK-FGTFTPPQRYAIPLIHE-------GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPL 93 (876)
T ss_pred HHHHHHHc-cCCCCHHHHHHHHHHHc-------CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCH
Confidence 44555554 34799999999999864 578999999999999999999987653 24579999999
Q ss_pred HHHHHHHHHHHHHhh----------c-CCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc-------c
Q 003260 341 IVLAKQHFDVVSERF----------S-KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-------V 402 (835)
Q Consensus 341 r~LA~Q~~~~~~~~f----------~-~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l-------~ 402 (835)
++|+.|+++++.+.+ + .++++++.+.+|+.+..++...+. ..++|+|+||+.|...+ .
T Consensus 94 raLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~----~~p~IlVtTPE~L~~ll~~~~~~~~ 169 (876)
T PRK13767 94 RALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK----KPPHILITTPESLAILLNSPKFREK 169 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh----CCCCEEEecHHHHHHHhcChhHHHH
Confidence 999999998765322 1 234789999999988776554432 35899999999874211 3
Q ss_pred cCCccEEEEcCccccchh--------hHHHHhhhc-CCceEEEeecCCChh-hHHHHHhcC------CCcceecCCCCCc
Q 003260 403 YNNLGLLVVDEEQRFGVK--------QKEKIASFK-ISVDVLTLSATPIPR-TLYLALTGF------RDASLISTPPPER 466 (835)
Q Consensus 403 ~~~l~llVIDEaHr~g~~--------~~e~l~~l~-~~~~vL~lSATp~p~-tl~~~~~g~------~d~s~I~~~p~~r 466 (835)
+.++++|||||+|.+... ..+.+..+. .+.+++++|||+.+. .....+.+. ++..++.......
T Consensus 170 l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~ 249 (876)
T PRK13767 170 LRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKP 249 (876)
T ss_pred HhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCcc
Confidence 678999999999997521 123344443 678999999998653 333333332 1222332221111
Q ss_pred cceeEEec------c---cCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC----CCeEEEEeCCCCHHHH
Q 003260 467 LPIKTHLS------A---FSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP----GVDIAIAHGQQYSRQL 533 (835)
Q Consensus 467 ~~v~~~~~------~---~~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p----~~~v~~lhg~m~~~er 533 (835)
.++..... . .....+...+...+..+++++||||++..++.++..|...++ +..+.++||+|++++|
T Consensus 250 ~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R 329 (876)
T PRK13767 250 FDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVR 329 (876)
T ss_pred ceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHH
Confidence 11111100 0 012345566666677789999999999999999999988654 3689999999999999
Q ss_pred HHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCC-C--ceEEEEE
Q 003260 534 EETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD-K--EAHAYLF 598 (835)
Q Consensus 534 e~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g-~--~G~ay~l 598 (835)
..+++.|++|+++|||||+++++|||+|++++||+++.|. +.++|+||+||+||.+ . .|.++..
T Consensus 330 ~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~-sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 330 LEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPK-SVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCC-CHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999999999999999999999999997 9999999999999874 3 3555543
No 39
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=4.3e-38 Score=378.65 Aligned_cols=407 Identities=21% Similarity=0.290 Sum_probs=272.2
Q ss_pred CCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHH
Q 003260 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLA 344 (835)
Q Consensus 266 ~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA 344 (835)
+.++ +.+.+.. .+|+++|+|.+|++.+.. ++++++++|||||||++|.++++..+..+.+++|++|+++||
T Consensus 7 ~l~~~~~~~~~~-~~~~l~~~Q~~ai~~l~~-------~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa 78 (674)
T PRK01172 7 GYDDEFLNLFTG-NDFELYDHQRMAIEQLRK-------GENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLA 78 (674)
T ss_pred CCCHHHHHHHhh-CCCCCCHHHHHHHHHHhc-------CCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHH
Confidence 3444 5555544 467899999999998753 478999999999999999999999888889999999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCccccch
Q 003260 345 KQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFGV 419 (835)
Q Consensus 345 ~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaHr~g~ 419 (835)
.|+++++.+ +... |++|...+|+.+.... .+ ..++|+|+||+.+.. ...+.++++|||||+|.++.
T Consensus 79 ~q~~~~~~~-l~~~-g~~v~~~~G~~~~~~~--~~-----~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d 149 (674)
T PRK01172 79 MEKYEELSR-LRSL-GMRVKISIGDYDDPPD--FI-----KRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGD 149 (674)
T ss_pred HHHHHHHHH-Hhhc-CCeEEEEeCCCCCChh--hh-----ccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccC
Confidence 999999986 5544 7899988886543221 11 347999999986532 22368899999999999753
Q ss_pred h----hHHH----HhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCccceeEEec--------cc--CHHHH
Q 003260 420 K----QKEK----IASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLS--------AF--SKEKV 481 (835)
Q Consensus 420 ~----~~e~----l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~~--------~~--~~~~l 481 (835)
. ..+. +.....+.++|++|||+... ...+ .|.+...+... ....++...+. .. ....+
T Consensus 150 ~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la--~wl~~~~~~~~-~r~vpl~~~i~~~~~~~~~~~~~~~~~~ 225 (674)
T PRK01172 150 EDRGPTLETVLSSARYVNPDARILALSATVSNA-NELA--QWLNASLIKSN-FRPVPLKLGILYRKRLILDGYERSQVDI 225 (674)
T ss_pred CCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHH--HHhCCCccCCC-CCCCCeEEEEEecCeeeecccccccccH
Confidence 2 1222 23345678999999998432 1111 12222222211 11122221110 00 11124
Q ss_pred HHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCC-----------------------CeEEEEeCCCCHHHHHHHHH
Q 003260 482 ISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG-----------------------VDIAIAHGQQYSRQLEETME 538 (835)
Q Consensus 482 ~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~-----------------------~~v~~lhg~m~~~ere~vl~ 538 (835)
...+.+....+++++|||++++.++.++..|...++. .+|+++||+|++++|+.+++
T Consensus 226 ~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~ 305 (674)
T PRK01172 226 NSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEE 305 (674)
T ss_pred HHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHH
Confidence 4555555677899999999999999999988765432 25889999999999999999
Q ss_pred HhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCC--------CChhHHHHHhcccCCCC--CceEEEEEecCCCcCCHH
Q 003260 539 KFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ--------FGLAQLYQLRGRVGRAD--KEAHAYLFYPDKSLLSDQ 608 (835)
Q Consensus 539 ~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~--------~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~~~~~~~ 608 (835)
.|++|.++|||||+++++|+|+|+ ..||+.+.++ ++..+|.||+|||||.| ..|.+++++...+. ..
T Consensus 306 ~f~~g~i~VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~--~~ 382 (674)
T PRK01172 306 MFRNRYIKVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPAS--YD 382 (674)
T ss_pred HHHcCCCeEEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCccc--HH
Confidence 999999999999999999999995 5677766543 36778999999999998 46778887654321 11
Q ss_pred HHHHHH---------------HHHHH--hhcccchhhhhhhhccccCCCcccccccCCcccchHHHHHHHHHHHHhcccc
Q 003260 609 ALERLA---------------ALEEC--RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDE 671 (835)
Q Consensus 609 a~~rl~---------------~i~~~--~~l~sg~~la~~dl~irg~g~~lg~~q~g~~~~vg~~~y~~~l~~ai~~~~~ 671 (835)
..+++- ..... ..+..|+.....|+.- -....|...|. +.+...+.++.++..+..
T Consensus 383 ~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~-~l~~tf~~~~~------~~~~l~~~v~~~l~~L~~ 455 (674)
T PRK01172 383 AAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLIL-FYNETLMAIQN------GVDEIDYYIESSLKFLKE 455 (674)
T ss_pred HHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHH-HHHhhhhHhcC------chHHHHHHHHHHHHHHHH
Confidence 111110 00000 1122233322233200 01111222221 123345566666665542
Q ss_pred -------cccccccCcceEEeeecCCCCccccccccCCc
Q 003260 672 -------HCVISVPYKSVQIDININPRLPSEYINHLENP 703 (835)
Q Consensus 672 -------~~~~~~~~g~~~~~l~idp~~~~~~i~~~~~~ 703 (835)
+....|++|.+++.+|++|.....++.+.+..
T Consensus 456 ~~~i~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~ 494 (674)
T PRK01172 456 NGFIKGDVTLRATRLGKLTSDLYIDPESALILKSAFDHD 494 (674)
T ss_pred CCCcccCCcEeECHHHHHHHHhCCCHHHHHHHHHHhhcc
Confidence 22346789999999999999998887766553
No 40
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-38 Score=349.64 Aligned_cols=451 Identities=24% Similarity=0.319 Sum_probs=317.8
Q ss_pred CCCCCCCCcccccccC-CCCChhHHHHHHHHhhccccCCCCCCChHHHHHHHHHHHHHHHhhhhhhcCccCCCCCCCCCC
Q 003260 56 SPTSKKPTQRREKNEN-ETDDISILNERIRRDFGKREATRPVMDSEEADKYIQLVKEQQQKGLQKLKGKKSGGGGAGAGA 134 (835)
Q Consensus 56 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~k~~~~~~~~~~~~~ 134 (835)
+.+.+.|+++.++... +.|+++.||.++|+.+++ ..++.++++.++.+.++++++|. .++.+..|....
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~~~~~k--~~~~~~e~~~~~~~~~~~k~~~~--~~~~~~~Rk~~k------ 119 (593)
T KOG0344|consen 50 PDNLAEPLKSEEKEKLQNSDSSSPLEDIDRRGSSK--KTKPKMEEKLSEDVIAAKKKLQT--SEKLLGIRKSNK------ 119 (593)
T ss_pred ccccccchhhccchhhhcccchhhhhhhhhccccc--ccCchhhhhccccHHHHHHHHhh--hcccccchhcce------
Confidence 4567788888888886 667788999999999999 67788999999999999888876 333333332111
Q ss_pred CCCCCCCCCcceeeeCCCCCCCCCcccccccccEEEeeEEEeecCCCCCccceEEEEEcCCCcccChhhHhHHHhhhcCC
Q 003260 135 GDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLP 214 (835)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~gd~vvh~~~Gig~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~y~~~ 214 (835)
. .+. | ....-|+.....+.++|...
T Consensus 120 ------------~----------------------------~v~---G------------~~~~~~l~~f~~lt~~~~~~ 144 (593)
T KOG0344|consen 120 ------------I----------------------------NVD---G------------FHLPPPLLSFSDLTYDYSMN 144 (593)
T ss_pred ------------e----------------------------ecc---C------------CCCCCccccccccchhhhhc
Confidence 0 000 0 00111222111122222210
Q ss_pred CCCCchHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCChHHHHHHHhCCCCCCHhHHHHHHHHH
Q 003260 215 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVE 294 (835)
Q Consensus 215 ~~~~~~~~l~~l~~~~~w~~~k~~~~~~~~~~~~~l~~l~~~r~~~~~~~~~~~~l~~~~~~~f~~~ptp~Q~~AI~~il 294 (835)
+. ++..+....+-.|||.|.+|++.++
T Consensus 145 ------~~-----------------------------------------------ll~nl~~~~F~~Pt~iq~~aipvfl 171 (593)
T KOG0344|consen 145 ------KR-----------------------------------------------LLENLQELGFDEPTPIQKQAIPVFL 171 (593)
T ss_pred ------HH-----------------------------------------------HHHhHhhCCCCCCCcccchhhhhhh
Confidence 01 1122333344589999999999987
Q ss_pred HhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC--------CCEEEEEcccHHHHHHHHHHHHHhhc--CCCCcEEE
Q 003260 295 RDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--------GKQAMVLAPTIVLAKQHFDVVSERFS--KYPDIKVG 364 (835)
Q Consensus 295 ~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~--------g~qvlVLvPtr~LA~Q~~~~~~~~f~--~~~gi~V~ 364 (835)
. .+|++.|+|||||||++|.+|++..+.. |.+++|+.||++||.|++.++.+ +. .-.+.++.
T Consensus 172 ~-------~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k-~~~~~~t~~~a~ 243 (593)
T KOG0344|consen 172 E-------KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRK-YSIDEGTSLRAA 243 (593)
T ss_pred c-------ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHh-cCCCCCCchhhh
Confidence 5 4799999999999999999999987643 56899999999999999999987 44 22234454
Q ss_pred EecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-------cccCCccEEEEcCccccch-----hhHHHHhhh--cC
Q 003260 365 LLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-------VVYNNLGLLVVDEEQRFGV-----KQKEKIASF--KI 430 (835)
Q Consensus 365 ~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-------l~~~~l~llVIDEaHr~g~-----~~~e~l~~l--~~ 430 (835)
.......+.++... +..-.+||+|+||..+... +.+..+.++|+||+|++-. .|...+-.. .+
T Consensus 244 ~~~~~~~~~qk~a~---~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~ 320 (593)
T KOG0344|consen 244 QFSKPAYPSQKPAF---LSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSP 320 (593)
T ss_pred hcccccchhhccch---hHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCc
Confidence 44443333222111 1223479999999887643 3566788999999998532 233333222 35
Q ss_pred CceEEEeecCCChhhHHHHHhcCCCcceecCC--CCCccceeEE-ecccCHHHHHHHHHHHHhcC--CeEEEEecCccCh
Q 003260 431 SVDVLTLSATPIPRTLYLALTGFRDASLISTP--PPERLPIKTH-LSAFSKEKVISAIKYELDRG--GQVFYVLPRIKGL 505 (835)
Q Consensus 431 ~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~--p~~r~~v~~~-~~~~~~~~l~~~i~~~l~~g--gqvlVf~n~v~~~ 505 (835)
++.+=+||||.+......+..-..+...+.+. +.....+... +..-+....+-++.+.+..| ..++||+.+.+.+
T Consensus 321 ~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRa 400 (593)
T KOG0344|consen 321 DIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERA 400 (593)
T ss_pred chhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHH
Confidence 67778899998777666555444443332221 1111111111 11223334455666666665 6899999999999
Q ss_pred HHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcc
Q 003260 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGR 585 (835)
Q Consensus 506 e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GR 585 (835)
..++..|. .++++.|.++||..++.+|++++++|+.|+++||+||+++++|+|+.|+++||+||.|. +..+|+||+||
T Consensus 401 k~L~~~L~-~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~-s~~syihrIGR 478 (593)
T KOG0344|consen 401 KQLFEELE-IYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQ-SDLSYIHRIGR 478 (593)
T ss_pred HHHHHHhh-hccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCc-hhHHHHHHhhc
Confidence 99999997 67899999999999999999999999999999999999999999999999999999998 66789999999
Q ss_pred cCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccc
Q 003260 586 VGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGE 644 (835)
Q Consensus 586 aGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dl~irg~g~~lg~ 644 (835)
+||+|+.|.||+||++.+ ..++..+.++... +|+.+...++.+++.+...+.
T Consensus 479 tgRag~~g~Aitfytd~d------~~~ir~iae~~~~-sG~evpe~~m~~~k~~~~~kk 530 (593)
T KOG0344|consen 479 TGRAGRSGKAITFYTDQD------MPRIRSIAEVMEQ-SGCEVPEKIMGIKKLSRLKKK 530 (593)
T ss_pred cCCCCCCcceEEEecccc------chhhhhHHHHHHH-cCCcchHHHHhhhhhhhhhhh
Confidence 999999999999999854 4567777776554 899999999988776665443
No 41
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-38 Score=344.49 Aligned_cols=327 Identities=23% Similarity=0.342 Sum_probs=250.1
Q ss_pred CCCCh-HHHHHHHhCCC-CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc---------CCCE
Q 003260 265 YPKNP-AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---------AGKQ 333 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~-~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~---------~g~q 333 (835)
...++ +...+.+...+ .||.+|.+|||.++. ++|++|.++||||||++|++|+...+. +|..
T Consensus 141 LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~-------grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ 213 (708)
T KOG0348|consen 141 LGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLE-------GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPY 213 (708)
T ss_pred cCCCHHHHHHHHHHhccCccchHhhcchhhhhc-------CcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCce
Confidence 45666 88888887777 999999999999985 689999999999999999999998763 4789
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc------cccCCcc
Q 003260 334 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNNLG 407 (835)
Q Consensus 334 vlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~------l~~~~l~ 407 (835)
++|+||||+||.|+|+.+.+.+..+.-+-.+++.|+...+.. -.+++.| ++|+||||++|.+. +.+.++.
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSE---KARLRKG-iNILIgTPGRLvDHLknT~~i~~s~LR 289 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSE---KARLRKG-INILIGTPGRLVDHLKNTKSIKFSRLR 289 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccH---HHHHhcC-ceEEEcCchHHHHHHhccchheeeeee
Confidence 999999999999999999998887755666777777655432 2445667 99999999999864 4678899
Q ss_pred EEEEcCcccc---chhh-H-HHHhhh-------------cCCceEEEeecCCChhhHHHHHhcCCCcceecCC-------
Q 003260 408 LLVVDEEQRF---GVKQ-K-EKIASF-------------KISVDVLTLSATPIPRTLYLALTGFRDASLISTP------- 462 (835)
Q Consensus 408 llVIDEaHr~---g~~~-~-e~l~~l-------------~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~------- 462 (835)
+||+||+|++ |+.. . ..+... +...+-+++|||+......++-..+.|+..|...
T Consensus 290 wlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~ 369 (708)
T KOG0348|consen 290 WLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLN 369 (708)
T ss_pred EEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcC
Confidence 9999999984 6532 2 222221 2236678999999877777777777777666511
Q ss_pred CCC-------------cc-----c---eeEEecccCHH---HHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhC
Q 003260 463 PPE-------------RL-----P---IKTHLSAFSKE---KVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAF 516 (835)
Q Consensus 463 p~~-------------r~-----~---v~~~~~~~~~~---~l~~~i~~~l~--~ggqvlVf~n~v~~~e~l~~~L~~~~ 516 (835)
|.. .. | .+.++...+.- .+...+...+. ...+++||+.+.+.++.=++.+.+..
T Consensus 370 p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l 449 (708)
T KOG0348|consen 370 PKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEAL 449 (708)
T ss_pred cchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhh
Confidence 000 00 0 00111111111 12223333332 23478999999888887666665431
Q ss_pred --------------------CCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCCh
Q 003260 517 --------------------PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGL 576 (835)
Q Consensus 517 --------------------p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl 576 (835)
-+.++..+||+|.+++|..+++.|...+..||+|||++++|+|+|+|..||.||+| |+.
T Consensus 450 ~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P-~s~ 528 (708)
T KOG0348|consen 450 LSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPP-FST 528 (708)
T ss_pred hcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCC-CCH
Confidence 13578999999999999999999999988899999999999999999999999999 599
Q ss_pred hHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 577 AQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 577 ~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
++|+||+||+.|.|..|.+.+|..+.+
T Consensus 529 adylHRvGRTARaG~kG~alLfL~P~E 555 (708)
T KOG0348|consen 529 ADYLHRVGRTARAGEKGEALLFLLPSE 555 (708)
T ss_pred HHHHHHhhhhhhccCCCceEEEecccH
Confidence 999999999999999999999988764
No 42
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.8e-38 Score=340.95 Aligned_cols=333 Identities=24% Similarity=0.277 Sum_probs=271.6
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC--------CCEEEEEcccH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--------GKQAMVLAPTI 341 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~--------g~qvlVLvPtr 341 (835)
++..+...-+..|||+|.+|++..+. ++|++-.+-||||||.+|+.|++..+.+ |+..+|+|||+
T Consensus 234 Lm~airk~Ey~kptpiq~qalptals-------grdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTr 306 (731)
T KOG0339|consen 234 LMTAIRKSEYEKPTPIQCQALPTALS-------GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTR 306 (731)
T ss_pred HHHHHhhhhcccCCcccccccccccc-------cccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccH
Confidence 77788888888999999999998753 6899999999999999999999877643 67899999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----cccCCccEEEEcCccc
Q 003260 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQR 416 (835)
Q Consensus 342 ~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l~~~~l~llVIDEaHr 416 (835)
+||.|++.+.++ |++--|+++..++++.+..++ ...|+.| +.|||+||++|.+. ..+.++.+||+||+++
T Consensus 307 ela~Qi~~eaKk-f~K~ygl~~v~~ygGgsk~eQ---~k~Lk~g-~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadr 381 (731)
T KOG0339|consen 307 ELASQIFSEAKK-FGKAYGLRVVAVYGGGSKWEQ---SKELKEG-AEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADR 381 (731)
T ss_pred HHHHHHHHHHHH-hhhhccceEEEeecCCcHHHH---HHhhhcC-CeEEEechHHHHHHHHhhcccceeeeEEEEechhh
Confidence 999999999987 754448999999999888774 4555656 99999999999764 4567889999999999
Q ss_pred c---ch-hhHHHH-hhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCC--cccee-EEecccCHHHHHHHHHHH
Q 003260 417 F---GV-KQKEKI-ASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIK-THLSAFSKEKVISAIKYE 488 (835)
Q Consensus 417 ~---g~-~~~e~l-~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~--r~~v~-~~~~~~~~~~l~~~i~~~ 488 (835)
| |+ .+...| ...+++.|.|+||||.......++...+.++.-+...... ...+. +.....+.+..+.++.+.
T Consensus 382 mfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~ 461 (731)
T KOG0339|consen 382 MFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRH 461 (731)
T ss_pred hhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHH
Confidence 5 55 334444 4568999999999999888888888777776544332111 11222 222233445556666665
Q ss_pred H---hcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccE
Q 003260 489 L---DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565 (835)
Q Consensus 489 l---~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~ 565 (835)
+ ...|++|||+.....+++++..|+-. ++.|..+||+|.+.+|.+++..|+.+...|||+|+++++|+|||.+.+
T Consensus 462 L~~f~S~gkvlifVTKk~~~e~i~a~Lklk--~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikT 539 (731)
T KOG0339|consen 462 LVEFSSEGKVLIFVTKKADAEEIAANLKLK--GFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKT 539 (731)
T ss_pred hhhhccCCcEEEEEeccCCHHHHHHHhccc--cceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccce
Confidence 5 34689999999999999999999887 999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHH
Q 003260 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619 (835)
Q Consensus 566 VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~ 619 (835)
||++|.-+ +++.+.||+||+||.|..|.+|+++++.+.. .+-.-...++.+
T Consensus 540 VvnyD~ar-dIdththrigrtgRag~kGvayTlvTeKDa~--fAG~LVnnLe~a 590 (731)
T KOG0339|consen 540 VVNYDFAR-DIDTHTHRIGRTGRAGEKGVAYTLVTEKDAE--FAGHLVNNLEGA 590 (731)
T ss_pred eecccccc-hhHHHHHHhhhcccccccceeeEEechhhHH--HhhHHHHHHhhc
Confidence 99999998 9999999999999999999999999988653 333334445444
No 43
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-39 Score=333.47 Aligned_cols=319 Identities=18% Similarity=0.172 Sum_probs=254.4
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCC---CEEEEEcccHHHHHHH
Q 003260 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG---KQAMVLAPTIVLAKQH 347 (835)
Q Consensus 271 ~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g---~qvlVLvPtr~LA~Q~ 347 (835)
...+.+.+.-.|+|+|.++|+..+. ++|+|.-+-.|+|||.+|..|+++.+... -|++|+||||+||.|.
T Consensus 97 LmgIfe~G~ekPSPiQeesIPiaLt-------GrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQt 169 (459)
T KOG0326|consen 97 LMGIFEKGFEKPSPIQEESIPIALT-------GRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQT 169 (459)
T ss_pred HHHHHHhccCCCCCccccccceeec-------chhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHH
Confidence 3344455556899999999998864 68999999999999999999999988653 5899999999999999
Q ss_pred HHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----cccCCccEEEEcCccccch---
Q 003260 348 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFGV--- 419 (835)
Q Consensus 348 ~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l~~~~l~llVIDEaHr~g~--- 419 (835)
.+.+++ ++...+++|.+.+|+.+... .+-++. ..++++||||+++.+- ..++++.++|+||||.+..
T Consensus 170 Sqvc~~-lskh~~i~vmvttGGT~lrD---DI~Rl~-~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F 244 (459)
T KOG0326|consen 170 SQVCKE-LSKHLGIKVMVTTGGTSLRD---DIMRLN-QTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDF 244 (459)
T ss_pred HHHHHH-HhcccCeEEEEecCCccccc---ceeeec-CceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhh
Confidence 998886 77777899999999876543 233343 3499999999988753 3578899999999998633
Q ss_pred --hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCC-CccceeEEecccCHHHHHHHHHHHHh--cCCe
Q 003260 420 --KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP-ERLPIKTHLSAFSKEKVISAIKYELD--RGGQ 494 (835)
Q Consensus 420 --~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~-~r~~v~~~~~~~~~~~l~~~i~~~l~--~ggq 494 (835)
.....+..++.+.|++++|||.+.....+....+..+..|..... ....+..++....+...+--+...+. .-.|
T Consensus 245 ~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQ 324 (459)
T KOG0326|consen 245 QPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQ 324 (459)
T ss_pred hhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHHHHHHhcccc
Confidence 223445666889999999999876666666666776666654321 11223333333332222222222222 2368
Q ss_pred EEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCC
Q 003260 495 VFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF 574 (835)
Q Consensus 495 vlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~ 574 (835)
.+||||+...+|-++..+.++ |+.+.++|++|.+++|..++.+|++|.++.||||+.+.+|||++++|+||++|.|+
T Consensus 325 sIIFCNS~~rVELLAkKITel--GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk- 401 (459)
T KOG0326|consen 325 SIIFCNSTNRVELLAKKITEL--GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK- 401 (459)
T ss_pred eEEEeccchHhHHHHHHHHhc--cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC-
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999999999998
Q ss_pred ChhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003260 575 GLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 575 sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
+.+.|.||+||.||.|..|.|+-+++-++-
T Consensus 402 ~aEtYLHRIGRsGRFGhlGlAInLityedr 431 (459)
T KOG0326|consen 402 NAETYLHRIGRSGRFGHLGLAINLITYEDR 431 (459)
T ss_pred CHHHHHHHccCCccCCCcceEEEEEehhhh
Confidence 899999999999999999999999876543
No 44
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=9.3e-39 Score=338.63 Aligned_cols=321 Identities=21% Similarity=0.305 Sum_probs=262.3
Q ss_pred hHHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHH-H----------cCCCEEEEE
Q 003260 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV-V----------SAGKQAMVL 337 (835)
Q Consensus 269 ~l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~-l----------~~g~qvlVL 337 (835)
++.+.+.+.+...|||+|.+.++.++. ++|.+..+-||||||++|.+|+... + ..|+..+|+
T Consensus 180 ~~L~~lk~KGI~~PTpIQvQGlPvvLs-------GRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLii 252 (610)
T KOG0341|consen 180 PLLRGLKKKGIVHPTPIQVQGLPVVLS-------GRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLII 252 (610)
T ss_pred HHHHHHHhcCCCCCCceeecCcceEee-------cCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEE
Confidence 477888888889999999999999874 6899999999999999998776532 1 247899999
Q ss_pred cccHHHHHHHHHHHHHhhc-----CCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----cccCCcc
Q 003260 338 APTIVLAKQHFDVVSERFS-----KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLG 407 (835)
Q Consensus 338 vPtr~LA~Q~~~~~~~~f~-----~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l~~~~l~ 407 (835)
||+|+||.|.++-+...+. .+|.++..++.|+.+..+ +++.++.| ++|+|+||++|.+. +.+.-+.
T Consensus 253 cPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~e---ql~~v~~G-vHivVATPGRL~DmL~KK~~sLd~CR 328 (610)
T KOG0341|consen 253 CPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVRE---QLDVVRRG-VHIVVATPGRLMDMLAKKIMSLDACR 328 (610)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHH---HHHHHhcC-eeEEEcCcchHHHHHHHhhccHHHHH
Confidence 9999999999988876543 457788999999998877 45566778 99999999998753 4566678
Q ss_pred EEEEcCcccc---chh--hHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCcc--ceeEEecccCHHH
Q 003260 408 LLVVDEEQRF---GVK--QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL--PIKTHLSAFSKEK 480 (835)
Q Consensus 408 llVIDEaHr~---g~~--~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~--~v~~~~~~~~~~~ 480 (835)
++.+|||+|+ |+. .+..+..++...|++++|||++.....++.+.+-.+..+.+...... +|...+.....+.
T Consensus 329 yL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEa 408 (610)
T KOG0341|consen 329 YLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEA 408 (610)
T ss_pred HhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhh
Confidence 8999999995 653 34555666788999999999987777778777777766665433222 1222222222233
Q ss_pred HHHHHHHHHhc-CCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCC
Q 003260 481 VISAIKYELDR-GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559 (835)
Q Consensus 481 l~~~i~~~l~~-ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GID 559 (835)
.+-.+.+++.+ ...|+|||....+++.+.++|--. |+.++.+||+.++++|...++.|+.|+.+|||||++++.|+|
T Consensus 409 KiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlK--GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLD 486 (610)
T KOG0341|consen 409 KIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLK--GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLD 486 (610)
T ss_pred hhhhHHHHhccCCCceEEEeccccChHHHHHHHHHc--cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCC
Confidence 33444555544 478999999999999999999776 899999999999999999999999999999999999999999
Q ss_pred CCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 560 Ip~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+|++.+|||||+|. .++.|+||+||+||+|+.|.+-+|.+...
T Consensus 487 Fp~iqHVINyDMP~-eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 487 FPDIQHVINYDMPE-EIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred CccchhhccCCChH-HHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 99999999999998 89999999999999999999999998763
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.6e-37 Score=372.72 Aligned_cols=317 Identities=18% Similarity=0.203 Sum_probs=232.7
Q ss_pred CCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc-CCCEEEEEcccHHHH
Q 003260 267 KNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLA 344 (835)
Q Consensus 267 ~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~-~g~qvlVLvPtr~LA 344 (835)
.++ +.+.+.+.+..+|+|+|.+|++.... .+.|+++++|||||||++|.++++..+. .+.+++|++|+++|+
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~------~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa 81 (720)
T PRK00254 8 VDERIKRVLKERGIEELYPPQAEALKSGVL------EGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALA 81 (720)
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHHh------CCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHH
Confidence 344 77788887777999999999986432 2579999999999999999999887754 578999999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----cccCCccEEEEcCccccch
Q 003260 345 KQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFGV 419 (835)
Q Consensus 345 ~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l~~~~l~llVIDEaHr~g~ 419 (835)
.|+++.|.. |..+ |++|..++|+.+... .. .++++|+|+||+.+... ..++++++|||||+|.++.
T Consensus 82 ~q~~~~~~~-~~~~-g~~v~~~~Gd~~~~~--~~-----~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~ 152 (720)
T PRK00254 82 EEKYREFKD-WEKL-GLRVAMTTGDYDSTD--EW-----LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGS 152 (720)
T ss_pred HHHHHHHHH-Hhhc-CCEEEEEeCCCCCch--hh-----hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCC
Confidence 999999986 6555 799999999765432 11 14589999999876432 2458899999999998754
Q ss_pred hh-----HHHHhhhcCCceEEEeecCCC-hhhHHHHHhcCCCcceecCCCCCccceeEE--------ecccC----HHHH
Q 003260 420 KQ-----KEKIASFKISVDVLTLSATPI-PRTLYLALTGFRDASLISTPPPERLPIKTH--------LSAFS----KEKV 481 (835)
Q Consensus 420 ~~-----~e~l~~l~~~~~vL~lSATp~-p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~--------~~~~~----~~~l 481 (835)
.. ...+..+..+.++|++|||+. ++.+...+ ....+... ....+.... ..... ....
T Consensus 153 ~~rg~~le~il~~l~~~~qiI~lSATl~n~~~la~wl----~~~~~~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T PRK00254 153 YDRGATLEMILTHMLGRAQILGLSATVGNAEELAEWL----NAELVVSD-WRPVKLRKGVFYQGFLFWEDGKIERFPNSW 227 (720)
T ss_pred ccchHHHHHHHHhcCcCCcEEEEEccCCCHHHHHHHh----CCccccCC-CCCCcceeeEecCCeeeccCcchhcchHHH
Confidence 22 223445567899999999984 33332221 11111110 000111100 00000 1223
Q ss_pred HHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC----------------------C---------CCeEEEEeCCCCH
Q 003260 482 ISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF----------------------P---------GVDIAIAHGQQYS 530 (835)
Q Consensus 482 ~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~----------------------p---------~~~v~~lhg~m~~ 530 (835)
...+.+.+..+++++||||++..++.++..|.... + ...|+++||+|++
T Consensus 228 ~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 228 ESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 44455566778999999999999888776664321 0 1359999999999
Q ss_pred HHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEE-------ecCCCCChhHHHHHhcccCCCC--CceEEEEEecC
Q 003260 531 RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV-------QDVQQFGLAQLYQLRGRVGRAD--KEAHAYLFYPD 601 (835)
Q Consensus 531 ~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi-------~d~p~~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~ 601 (835)
++|..+++.|++|.++|||||+++++|+|+|.+++||. ++.+.++..+|.||+|||||.| ..|.|+++++.
T Consensus 308 ~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~ 387 (720)
T PRK00254 308 TERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATT 387 (720)
T ss_pred HHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecC
Confidence 99999999999999999999999999999998887773 4455556789999999999975 67999999876
Q ss_pred CC
Q 003260 602 KS 603 (835)
Q Consensus 602 ~~ 603 (835)
++
T Consensus 388 ~~ 389 (720)
T PRK00254 388 EE 389 (720)
T ss_pred cc
Confidence 43
No 46
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=8.4e-37 Score=353.70 Aligned_cols=287 Identities=32% Similarity=0.429 Sum_probs=233.5
Q ss_pred EEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCC
Q 003260 307 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386 (835)
Q Consensus 307 Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~ 386 (835)
|+.|+||||||++|+.++...+..|++++|++|+++|+.|++++|++.| +.++.++++..+..++...|..+.+|+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~~g~ 76 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVKNGE 76 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHHcCC
Confidence 5789999999999998888888889999999999999999999999876 467889999999999999999999999
Q ss_pred cceeeccHHHhhcccccCCccEEEEcCccccchhhHH----------HHhhhcCCceEEEeecCCChhhHHHHHhcCCCc
Q 003260 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE----------KIASFKISVDVLTLSATPIPRTLYLALTGFRDA 456 (835)
Q Consensus 387 ~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e----------~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~ 456 (835)
++|||||++.++ .++.++++|||||+|.+++.+.+ .+.....+.++|++||||+.+++..+..+....
T Consensus 77 ~~IVVGTrsalf--~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~g~~~~ 154 (505)
T TIGR00595 77 ILVVIGTRSALF--LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQKAYRL 154 (505)
T ss_pred CCEEECChHHHc--CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhcCCeEE
Confidence 999999999887 56899999999999998765421 233345689999999999999998887764332
Q ss_pred ceecCCCCCc-cceeEEec-------ccCHHHHHHHHHHHHhcCCeEEEEecCcc-------------------------
Q 003260 457 SLISTPPPER-LPIKTHLS-------AFSKEKVISAIKYELDRGGQVFYVLPRIK------------------------- 503 (835)
Q Consensus 457 s~I~~~p~~r-~~v~~~~~-------~~~~~~l~~~i~~~l~~ggqvlVf~n~v~------------------------- 503 (835)
..+...+... .|....+. ..-...+++++.+.+.+++|+|+|+|++.
T Consensus 155 ~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~ 234 (505)
T TIGR00595 155 LVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTY 234 (505)
T ss_pred eechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEE
Confidence 2222111111 11111110 11234688999999999999999988731
Q ss_pred -----------------------------------ChHHHHHHHHhhCCCCeEEEEeCCCCHHHH--HHHHHHhhcCCee
Q 003260 504 -----------------------------------GLEEPMDFLQQAFPGVDIAIAHGQQYSRQL--EETMEKFAQGAIK 546 (835)
Q Consensus 504 -----------------------------------~~e~l~~~L~~~~p~~~v~~lhg~m~~~er--e~vl~~F~~g~~~ 546 (835)
+++.+.+.|++.||+.++..+|++++...+ +.++++|.+|+.+
T Consensus 235 h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ 314 (505)
T TIGR00595 235 HKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD 314 (505)
T ss_pred ecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC
Confidence 268899999999999999999999976655 8999999999999
Q ss_pred EEEEcCcCCcCCCCCCccEEEEecCCC------C-----ChhHHHHHhcccCCCCCceEEEEEe
Q 003260 547 ILICTNIVESGLDIQNANTIIVQDVQQ------F-----GLAQLYQLRGRVGRADKEAHAYLFY 599 (835)
Q Consensus 547 ILVaT~iie~GIDIp~v~~VIi~d~p~------~-----sl~~l~Qr~GRaGR~g~~G~ay~l~ 599 (835)
|||+|+++++|+|+|++++|++.|++. | ....|+|++||+||.++.|.+++..
T Consensus 315 ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 315 ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred EEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 999999999999999999998777653 1 2467899999999999999998643
No 47
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.3e-37 Score=323.40 Aligned_cols=321 Identities=21% Similarity=0.240 Sum_probs=262.7
Q ss_pred ChHHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC---CCEEEEEcccHHHH
Q 003260 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLA 344 (835)
Q Consensus 268 ~~l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~---g~qvlVLvPtr~LA 344 (835)
+.+++.+-...+-.|+.+|..|++-++. +.|++.+.++..|+|||.+|.+.++..+.. -+|+++|+||++||
T Consensus 99 Pellkgly~M~F~kPskIQe~aLPlll~-----~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA 173 (477)
T KOG0332|consen 99 PELLKGLYAMKFQKPSKIQETALPLLLA-----EPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELA 173 (477)
T ss_pred HHHHhHHHHhccCCcchHHHhhcchhhc-----CCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHH
Confidence 3477777777777999999999999874 568899999999999999999999988765 48999999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc------ccccCCccEEEEcCccccc
Q 003260 345 KQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVVDEEQRFG 418 (835)
Q Consensus 345 ~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~------~l~~~~l~llVIDEaHr~g 418 (835)
.|+.+.+.+ +++|.++++.+..++... .+...+ ..+|+||||+.+.+ .+.+..+.++|+|||+.+.
T Consensus 174 ~Q~~eVv~e-MGKf~~ita~yair~sk~-~rG~~i------~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi 245 (477)
T KOG0332|consen 174 PQTGEVVEE-MGKFTELTASYAIRGSKA-KRGNKL------TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMI 245 (477)
T ss_pred HHHHHHHHH-hcCceeeeEEEEecCccc-ccCCcc------hhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhh
Confidence 999999987 899888888888886411 111111 25799999987754 3456778899999999874
Q ss_pred hhh------HHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCC--CccceeEE-ecccCHHHHHHHHHHHH
Q 003260 419 VKQ------KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP--ERLPIKTH-LSAFSKEKVISAIKYEL 489 (835)
Q Consensus 419 ~~~------~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~--~r~~v~~~-~~~~~~~~l~~~i~~~l 489 (835)
..+ ......++.+.|+|++|||.......++.....++..+..... .-.++..+ +...+.+..++++....
T Consensus 246 ~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~ly 325 (477)
T KOG0332|consen 246 DTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLY 325 (477)
T ss_pred hcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHH
Confidence 322 2334445669999999999988888999988888877655422 22344443 33445566677776644
Q ss_pred hc--CCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEE
Q 003260 490 DR--GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567 (835)
Q Consensus 490 ~~--ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VI 567 (835)
.- -||.+|||.++..+..++..+... |..|.++||.|+..+|..++..|+.|..+|||+|++++||||++.|+.||
T Consensus 326 g~~tigqsiIFc~tk~ta~~l~~~m~~~--Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~Vv 403 (477)
T KOG0332|consen 326 GLLTIGQSIIFCHTKATAMWLYEEMRAE--GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVV 403 (477)
T ss_pred hhhhhhheEEEEeehhhHHHHHHHHHhc--CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEE
Confidence 33 389999999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred EecCCC-----CChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 568 VQDVQQ-----FGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 568 i~d~p~-----~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+||.|- -+.+.|.||+||+||.|+.|.++-|++++.
T Consensus 404 NydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 404 NYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKD 444 (477)
T ss_pred ecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccC
Confidence 999873 156889999999999999999999998764
No 48
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-37 Score=340.00 Aligned_cols=312 Identities=20% Similarity=0.211 Sum_probs=244.3
Q ss_pred ChHHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc--------------CCCE
Q 003260 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--------------AGKQ 333 (835)
Q Consensus 268 ~~l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~--------------~g~q 333 (835)
.++..++...++-.|||+|..+++.+..+ ..|+|..|+||||||++|-+|++..+. .+.+
T Consensus 190 ~~iL~aL~~~gFs~Pt~IQsl~lp~ai~g------k~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k 263 (731)
T KOG0347|consen 190 MEILRALSNLGFSRPTEIQSLVLPAAIRG------KVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVK 263 (731)
T ss_pred HHHHHHHHhcCCCCCccchhhcccHhhcc------chhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCc
Confidence 44889999998889999999999998763 268999999999999999999887321 2445
Q ss_pred --EEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc--------ccc
Q 003260 334 --AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR--------VVY 403 (835)
Q Consensus 334 --vlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~--------l~~ 403 (835)
+||++|||+||.|+.+.+.. ...++++++..++|+.....+++.+.. .++|||+||++|... -.|
T Consensus 264 ~~~LV~tPTRELa~QV~~Hl~a-i~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~ 338 (731)
T KOG0347|consen 264 PIALVVTPTRELAHQVKQHLKA-IAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNF 338 (731)
T ss_pred ceeEEecChHHHHHHHHHHHHH-hccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhh
Confidence 99999999999999999987 777889999999999887766655543 689999999988642 257
Q ss_pred CCccEEEEcCccccch----hhHHHH-h-----hhcCCceEEEeecCCChhh----------------------HHHHHh
Q 003260 404 NNLGLLVVDEEQRFGV----KQKEKI-A-----SFKISVDVLTLSATPIPRT----------------------LYLALT 451 (835)
Q Consensus 404 ~~l~llVIDEaHr~g~----~~~e~l-~-----~l~~~~~vL~lSATp~p~t----------------------l~~~~~ 451 (835)
+++.++|+||+|||.- .....| . ......|.+.+|||..-.. .-+...
T Consensus 339 k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~i 418 (731)
T KOG0347|consen 339 KKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKI 418 (731)
T ss_pred hhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHh
Confidence 8999999999999832 222222 2 2235679999999973110 011122
Q ss_pred cCCCc-ceecCCCCCccceeEEecccCHHHHHHHHHHHH-------------hcCCeEEEEecCccChHHHHHHHHhhCC
Q 003260 452 GFRDA-SLISTPPPERLPIKTHLSAFSKEKVISAIKYEL-------------DRGGQVFYVLPRIKGLEEPMDFLQQAFP 517 (835)
Q Consensus 452 g~~d~-s~I~~~p~~r~~v~~~~~~~~~~~l~~~i~~~l-------------~~ggqvlVf~n~v~~~e~l~~~L~~~~p 517 (835)
+++.. .+|...|... ....+.+....+- .-.|.++||||+++.+..++-.|..+
T Consensus 419 g~~~kpkiiD~t~q~~----------ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L-- 486 (731)
T KOG0347|consen 419 GFRGKPKIIDLTPQSA----------TASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNL-- 486 (731)
T ss_pred CccCCCeeEecCcchh----------HHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhc--
Confidence 23222 2222222110 0112222222110 12589999999999999999999998
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEE
Q 003260 518 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYL 597 (835)
Q Consensus 518 ~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~ 597 (835)
++....+|+.|.+.+|-+-+++|++..--|||||+++++|+|||+|.+||+|..|+ +.+-|+||.||+.|++..|..++
T Consensus 487 ~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPr-tseiYVHRSGRTARA~~~Gvsvm 565 (731)
T KOG0347|consen 487 DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPR-TSEIYVHRSGRTARANSEGVSVM 565 (731)
T ss_pred CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCC-ccceeEecccccccccCCCeEEE
Confidence 88999999999999999999999999999999999999999999999999999998 78899999999999999999999
Q ss_pred EecCCC
Q 003260 598 FYPDKS 603 (835)
Q Consensus 598 l~~~~~ 603 (835)
++.+.+
T Consensus 566 l~~P~e 571 (731)
T KOG0347|consen 566 LCGPQE 571 (731)
T ss_pred EeChHH
Confidence 999875
No 49
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.7e-35 Score=346.21 Aligned_cols=309 Identities=18% Similarity=0.216 Sum_probs=222.4
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHH---------HHHHHHHHH---c---CCCEEEEEcccHHHHH
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV---------ALRAIFCVV---S---AGKQAMVLAPTIVLAK 345 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~v---------al~a~l~~l---~---~g~qvlVLvPtr~LA~ 345 (835)
.+++.|.++=.+++..+.+ ++++|++|+||||||.+ |+.+.+..+ . .+.+++|++||++||.
T Consensus 160 ~l~~~~~~iQ~qil~~i~~---gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~ 236 (675)
T PHA02653 160 PLASLQPDVQLKIFEAWIS---RKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVR 236 (675)
T ss_pred cCCchhHHHHHHHHHHHHh---CCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHH
Confidence 5566555555555544422 68999999999999998 223333332 2 3569999999999999
Q ss_pred HHHHHHHHhhc--CCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhh--
Q 003260 346 QHFDVVSERFS--KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQ-- 421 (835)
Q Consensus 346 Q~~~~~~~~f~--~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~-- 421 (835)
|+..++.+..+ .+.++.+.+..|+.+... ..... ...+|+|+|+.... ..+.++++|||||+|++....
T Consensus 237 qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~----~~t~~-k~~~Ilv~T~~L~l--~~L~~v~~VVIDEaHEr~~~~Dl 309 (675)
T PHA02653 237 LHSITLLKSLGFDEIDGSPISLKYGSIPDEL----INTNP-KPYGLVFSTHKLTL--NKLFDYGTVIIDEVHEHDQIGDI 309 (675)
T ss_pred HHHHHHHHHhCccccCCceEEEEECCcchHH----hhccc-CCCCEEEEeCcccc--cccccCCEEEccccccCccchhH
Confidence 99999987553 245677888888766321 11111 23689999987422 357899999999999974322
Q ss_pred -HHHHhhhc-CCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCccceeEEecccC-------------HHHHHHHHH
Q 003260 422 -KEKIASFK-ISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFS-------------KEKVISAIK 486 (835)
Q Consensus 422 -~e~l~~l~-~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~~~~~-------------~~~l~~~i~ 486 (835)
...++... ...++++||||++.....+ ..++.++..+..+.....+++.++.... ...+...+.
T Consensus 310 lL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~ 388 (675)
T PHA02653 310 IIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALK 388 (675)
T ss_pred HHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHH
Confidence 22222222 2348999999996554433 4566777777765333466666543211 112333333
Q ss_pred HHHh-cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHh-hcCCeeEEEEcCcCCcCCCCCCcc
Q 003260 487 YELD-RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKF-AQGAIKILICTNIVESGLDIQNAN 564 (835)
Q Consensus 487 ~~l~-~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F-~~g~~~ILVaT~iie~GIDIp~v~ 564 (835)
.... .+++++||+|++.+++.+++.|.+..|++.+.++||+|++. ++++++| ++|+.+|||||+++|+|||||+|+
T Consensus 389 ~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~ 466 (675)
T PHA02653 389 KYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNAT 466 (675)
T ss_pred HhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCee
Confidence 3222 45799999999999999999999887789999999999974 5777887 689999999999999999999999
Q ss_pred EEEEec---CCC--------CChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 565 TIIVQD---VQQ--------FGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 565 ~VIi~d---~p~--------~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+||+++ .|. .+.++|.||+|||||. ++|.||.|+++++
T Consensus 467 ~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~ 515 (675)
T PHA02653 467 HVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDL 515 (675)
T ss_pred EEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHH
Confidence 999998 332 2678999999999999 7899999998875
No 50
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-36 Score=326.97 Aligned_cols=329 Identities=21% Similarity=0.257 Sum_probs=235.6
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhhhc--CCCCCcEEEEccCCCcccHHHHHHHHHHHcCC----CEEEEEcccHHHHH
Q 003260 272 AEFAAQFPYEPTPDQKKAFLDVERDLTE--RETPMDRLICGDVGFGKTEVALRAIFCVVSAG----KQAMVLAPTIVLAK 345 (835)
Q Consensus 272 ~~~~~~f~~~ptp~Q~~AI~~il~dl~~--~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g----~qvlVLvPtr~LA~ 345 (835)
..+..++.-.+.|+|..+++.++..... ..+++|+.|.+|||||||++|.+|+.+.+... .+++|++||++|+.
T Consensus 150 q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~ 229 (620)
T KOG0350|consen 150 QLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELAL 229 (620)
T ss_pred HHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHH
Confidence 4566677778889999999999876532 12478999999999999999999999998654 58999999999999
Q ss_pred HHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhc-CCcceeeccHHHhhccc------ccCCccEEEEcCccccc
Q 003260 346 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH-GHLNIIVGTHSLLGSRV------VYNNLGLLVVDEEQRFG 418 (835)
Q Consensus 346 Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~-G~~dIIVgT~~~L~~~l------~~~~l~llVIDEaHr~g 418 (835)
|++.+|.. +..-.|+.|+.++|..+......++..... ..+||+|+||++|.+++ .+++|.++|||||||++
T Consensus 230 QV~~~f~~-~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll 308 (620)
T KOG0350|consen 230 QVYDTFKR-LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLL 308 (620)
T ss_pred HHHHHHHH-hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHH
Confidence 99999997 444458999999987665443333322221 23599999999997654 57899999999999975
Q ss_pred hhhHHH----Hhh----------------h-------------------cCCceEEEeecCCC--hhhHHHHHhcCCCcc
Q 003260 419 VKQKEK----IAS----------------F-------------------KISVDVLTLSATPI--PRTLYLALTGFRDAS 457 (835)
Q Consensus 419 ~~~~e~----l~~----------------l-------------------~~~~~vL~lSATp~--p~tl~~~~~g~~d~s 457 (835)
....+. +.. . .+....+.+|||.. |..+.....+....-
T Consensus 309 ~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~ 388 (620)
T KOG0350|consen 309 DQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLF 388 (620)
T ss_pred HHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceE
Confidence 432211 000 0 01122445555542 222222222211111
Q ss_pred eecCCCCCccceeEEe------cc--cCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC--CCCeEEEEeCC
Q 003260 458 LISTPPPERLPIKTHL------SA--FSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF--PGVDIAIAHGQ 527 (835)
Q Consensus 458 ~I~~~p~~r~~v~~~~------~~--~~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~--p~~~v~~lhg~ 527 (835)
.+..+-..++.+...+ .. +..-.+...| ...+..++++|+++++.+..++..|+-.+ +..++..+.|+
T Consensus 389 ~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI--~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~ 466 (620)
T KOG0350|consen 389 HVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALI--TSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQ 466 (620)
T ss_pred EeecccceeeecChhhhhceeecccccchHhHHHHH--HHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhh
Confidence 1111111121111100 00 1111122222 22456799999999999999999988443 35677789999
Q ss_pred CCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003260 528 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 528 m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
++...|.+.+.+|..|++.||||+++++||||+.+++.||+||+|. +..+|+||+||++|+|+.|+||.+...++.
T Consensus 467 l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~-~~ktyVHR~GRTARAgq~G~a~tll~~~~~ 542 (620)
T KOG0350|consen 467 LNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPA-SDKTYVHRAGRTARAGQDGYAITLLDKHEK 542 (620)
T ss_pred hhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCc-hhhHHHHhhcccccccCCceEEEeeccccc
Confidence 9999999999999999999999999999999999999999999998 789999999999999999999999987753
No 51
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-35 Score=319.14 Aligned_cols=327 Identities=20% Similarity=0.203 Sum_probs=257.1
Q ss_pred CCCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc---------CCCE
Q 003260 264 PYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---------AGKQ 333 (835)
Q Consensus 264 ~~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~---------~g~q 333 (835)
.|..|+ +++++.+.+.-.||-+|..||+-+++ ++|++..|-||||||.+|++|+++.+. .+..
T Consensus 23 ~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLE-------gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~s 95 (569)
T KOG0346|consen 23 EFGLDSRLLKAITKLGWEKPTLIQSSAIPLALE-------GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPS 95 (569)
T ss_pred HhCCCHHHHHHHHHhCcCCcchhhhcccchhhc-------CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccce
Confidence 467787 89999998888999999999999885 579999999999999999999987652 3678
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCC-CcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc------cccCCc
Q 003260 334 AMVLAPTIVLAKQHFDVVSERFSKYP-DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNNL 406 (835)
Q Consensus 334 vlVLvPtr~LA~Q~~~~~~~~f~~~~-gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~------l~~~~l 406 (835)
++|||||++||+|.|..+.+...-.+ .+++.-+.+..+..... ....+.++|||+||+.+... ..+..+
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~----~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l 171 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS----VALMDLPDIVVATPAKLLRHLAAGVLEYLDSL 171 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH----HHHccCCCeEEeChHHHHHHHhhccchhhhhe
Confidence 99999999999999999887432221 35555555444443322 23346799999999988643 345788
Q ss_pred cEEEEcCccc---cchhh--HHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCcc---ceeEEeccc--
Q 003260 407 GLLVVDEEQR---FGVKQ--KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL---PIKTHLSAF-- 476 (835)
Q Consensus 407 ~llVIDEaHr---~g~~~--~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~---~v~~~~~~~-- 476 (835)
.++|+||||. ||+.. +.....+++..|.++||||.......+-...++++.++.....+-. .+..++...
T Consensus 172 ~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse 251 (569)
T KOG0346|consen 172 SFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSE 251 (569)
T ss_pred eeEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEecc
Confidence 9999999997 46642 3344556788899999999988887777777888877655432221 123333222
Q ss_pred -CHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcC---
Q 003260 477 -SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN--- 552 (835)
Q Consensus 477 -~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~--- 552 (835)
+.-.++-++...---.|+.++|+|+++.|..+--.|.+- |++.++++|.|+..-|..++++|..|-++|+|||+
T Consensus 252 ~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqF--GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~ 329 (569)
T KOG0346|consen 252 EDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQF--GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSA 329 (569)
T ss_pred chhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHh--CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCcc
Confidence 233333333333334588999999999999998888887 89999999999999999999999999999999999
Q ss_pred --------------------------------cCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEec
Q 003260 553 --------------------------------IVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP 600 (835)
Q Consensus 553 --------------------------------iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~ 600 (835)
-+.+|||+.+|++|+|||+|. +...|+||+||++|+++.|.+..|+.
T Consensus 330 ~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~-t~~sYIHRvGRTaRg~n~GtalSfv~ 408 (569)
T KOG0346|consen 330 DGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPE-TVTSYIHRVGRTARGNNKGTALSFVS 408 (569)
T ss_pred chhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCC-chHHHHHhccccccCCCCCceEEEec
Confidence 135799999999999999998 89999999999999999999999998
Q ss_pred CCCc
Q 003260 601 DKSL 604 (835)
Q Consensus 601 ~~~~ 604 (835)
+.+.
T Consensus 409 P~e~ 412 (569)
T KOG0346|consen 409 PKEE 412 (569)
T ss_pred chHH
Confidence 8743
No 52
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=7.3e-35 Score=344.87 Aligned_cols=317 Identities=21% Similarity=0.255 Sum_probs=256.8
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC--------CCEEEEEcccH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--------GKQAMVLAPTI 341 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~--------g~qvlVLvPtr 341 (835)
+++.|... +.+|||.|.+||+.+.+ |.|+||++|||||||++|++|++..+.. +-.++|+.|.+
T Consensus 12 v~~~~~~~-~~~~t~~Q~~a~~~i~~-------G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLk 83 (814)
T COG1201 12 VREWFKRK-FTSLTPPQRYAIPEIHS-------GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLK 83 (814)
T ss_pred HHHHHHHh-cCCCCHHHHHHHHHHhC-------CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHH
Confidence 66777777 66999999999999974 6899999999999999999999987633 25899999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-------cccCCccEEEEcCc
Q 003260 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-------VVYNNLGLLVVDEE 414 (835)
Q Consensus 342 ~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-------l~~~~l~llVIDEa 414 (835)
+|.+.+..++..... ..|+.|.+-+|+.+..++..+. ...+||+|+||+.|.-. -.|.++.+|||||.
T Consensus 84 ALn~Di~~rL~~~~~-~~G~~v~vRhGDT~~~er~r~~----~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEi 158 (814)
T COG1201 84 ALNNDIRRRLEEPLR-ELGIEVAVRHGDTPQSEKQKML----KNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEI 158 (814)
T ss_pred HHHHHHHHHHHHHHH-HcCCccceecCCCChHHhhhcc----CCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehh
Confidence 999999999987555 4489999999998888876554 35699999999977532 24689999999999
Q ss_pred ccc-----chh---hHHHHhhhcCCceEEEeecCCC-hhhHHHHHhcCC-CcceecCCCCCccceeEEecccC-------
Q 003260 415 QRF-----GVK---QKEKIASFKISVDVLTLSATPI-PRTLYLALTGFR-DASLISTPPPERLPIKTHLSAFS------- 477 (835)
Q Consensus 415 Hr~-----g~~---~~e~l~~l~~~~~vL~lSATp~-p~tl~~~~~g~~-d~s~I~~~p~~r~~v~~~~~~~~------- 477 (835)
|.+ |+. ..+.+..+..+.|.+++|||.. |.....++.+.. ...++.........+........
T Consensus 159 Hel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~ 238 (814)
T COG1201 159 HALAESKRGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEEL 238 (814)
T ss_pred hhhhccccchhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccch
Confidence 987 332 2355666656899999999985 444556666666 44555554444444444332222
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcC
Q 003260 478 KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 557 (835)
Q Consensus 478 ~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~G 557 (835)
....+..+.+.+.+...++||+|++..+|.++..|++.++ ..+..+||+++.++|..+.++|++|+.+++|||+.++-|
T Consensus 239 ~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~-~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELG 317 (814)
T COG1201 239 WAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGP-DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELG 317 (814)
T ss_pred hHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcC-CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhc
Confidence 2346777777788888999999999999999999999864 789999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEecCCCCChhHHHHHhcccCCCC-CceEEEEEecC
Q 003260 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD-KEAHAYLFYPD 601 (835)
Q Consensus 558 IDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g-~~G~ay~l~~~ 601 (835)
||+-+++.||+++.|+ +.+.+.||+||+|+.- .....+++..+
T Consensus 318 IDiG~vdlVIq~~SP~-sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 318 IDIGDIDLVIQLGSPK-SVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred cccCCceEEEEeCCcH-HHHHHhHhccccccccCCcccEEEEecC
Confidence 9999999999999998 9999999999999764 44566665543
No 53
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.8e-34 Score=331.10 Aligned_cols=313 Identities=21% Similarity=0.289 Sum_probs=253.9
Q ss_pred HHHHHhCCC-CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHH
Q 003260 272 AEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 350 (835)
Q Consensus 272 ~~~~~~f~~-~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~ 350 (835)
..+.+.|+| .++|.|.++|..+++ ++|+++..|||.||+++|.+|++-. .+-+||+.|..+|...+.+.
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~-------g~d~lvvmPTGgGKSlCyQiPAll~---~G~TLVVSPLiSLM~DQV~~ 76 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLS-------GKDTLVVMPTGGGKSLCYQIPALLL---EGLTLVVSPLISLMKDQVDQ 76 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHc-------CCcEEEEccCCCCcchHhhhHHHhc---CCCEEEECchHHHHHHHHHH
Confidence 456677777 899999999999975 4899999999999999999998754 44799999999999999999
Q ss_pred HHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc-----ccCCccEEEEcCcccc---c----
Q 003260 351 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-----VYNNLGLLVVDEEQRF---G---- 418 (835)
Q Consensus 351 ~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l-----~~~~l~llVIDEaHr~---g---- 418 (835)
+... |+.+..+++..+..++...+..+..|..++++-+|++|...- .--.++++||||||.. |
T Consensus 77 l~~~-----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFR 151 (590)
T COG0514 77 LEAA-----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFR 151 (590)
T ss_pred HHHc-----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccC
Confidence 9874 899999999999999999999999999999999999887542 2356789999999973 4
Q ss_pred --hhhHHHHhhhcCCceEEEeecCCChhhHHHHHhc--CCCcceecCCCCCccceeEEecccC--HHHHHHHHHHHHh-c
Q 003260 419 --VKQKEKIASFKISVDVLTLSATPIPRTLYLALTG--FRDASLISTPPPERLPIKTHLSAFS--KEKVISAIKYELD-R 491 (835)
Q Consensus 419 --~~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g--~~d~s~I~~~p~~r~~v~~~~~~~~--~~~l~~~i~~~l~-~ 491 (835)
+.....+....+++.++++|||..+.+....... ..++.++... ..|..+...+.... ...+. .+..... .
T Consensus 152 P~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s-fdRpNi~~~v~~~~~~~~q~~-fi~~~~~~~ 229 (590)
T COG0514 152 PDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS-FDRPNLALKVVEKGEPSDQLA-FLATVLPQL 229 (590)
T ss_pred HhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec-CCCchhhhhhhhcccHHHHHH-HHHhhcccc
Confidence 2233334444468999999999988877655443 3343333322 22332222222211 12222 3333222 3
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecC
Q 003260 492 GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571 (835)
Q Consensus 492 ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~ 571 (835)
++..+|||.+++.++.+++.|... |+++..+||+|+.++|+.+.++|..++++|+|||..+++|||-||+++|||++.
T Consensus 230 ~~~GIIYc~sRk~~E~ia~~L~~~--g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 230 SKSGIIYCLTRKKVEELAEWLRKN--GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred CCCeEEEEeeHHhHHHHHHHHHHC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecC
Confidence 355899999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003260 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 572 p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
|. +++.|+|-+|||||.|.++.|++||.+.+.
T Consensus 308 P~-s~EsYyQE~GRAGRDG~~a~aill~~~~D~ 339 (590)
T COG0514 308 PG-SIESYYQETGRAGRDGLPAEAILLYSPEDI 339 (590)
T ss_pred CC-CHHHHHHHHhhccCCCCcceEEEeeccccH
Confidence 98 999999999999999999999999998764
No 54
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=5.3e-35 Score=325.61 Aligned_cols=317 Identities=19% Similarity=0.198 Sum_probs=255.9
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC---CCEEEEEcccHHHHHHHH
Q 003260 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLAKQHF 348 (835)
Q Consensus 272 ~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~---g~qvlVLvPtr~LA~Q~~ 348 (835)
..+....+-.||++|..||+.++. +||+||++-.|+|||++|..+++..+.. ..+++|++|||++|.|+.
T Consensus 38 ~glrrn~f~~ptkiQaaAIP~~~~-------kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~ 110 (980)
T KOG4284|consen 38 LGLRRNAFALPTKIQAAAIPAIFS-------KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIK 110 (980)
T ss_pred HHHHhhcccCCCchhhhhhhhhhc-------ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHH
Confidence 444555556899999999999875 5899999999999999997777766543 579999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCccccch----
Q 003260 349 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFGV---- 419 (835)
Q Consensus 349 ~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaHr~g~---- 419 (835)
+++...-..|.|.++.++.|+......... + .+++|+||||+++.. .+....+.|+|+||||.+..
T Consensus 111 ~tv~~v~~sf~g~~csvfIGGT~~~~d~~r---l--k~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sf 185 (980)
T KOG4284|consen 111 ETVRKVAPSFTGARCSVFIGGTAHKLDLIR---L--KQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESF 185 (980)
T ss_pred HHHHHhcccccCcceEEEecCchhhhhhhh---h--hhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhH
Confidence 999986566789999999999766543222 2 347899999998864 45668899999999998622
Q ss_pred --hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCC--ccceeEEecccCH-----H---HHHHHHHH
Q 003260 420 --KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLSAFSK-----E---KVISAIKY 487 (835)
Q Consensus 420 --~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~--r~~v~~~~~~~~~-----~---~l~~~i~~ 487 (835)
.....+..++...|++++|||-+...-+....+++++.++...... .+.+..++...+. + ..++.+..
T Consensus 186 q~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~ 265 (980)
T KOG4284|consen 186 QDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTH 265 (980)
T ss_pred HHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHH
Confidence 1124467788899999999997555556667788999888765332 2334444433221 1 12333333
Q ss_pred HHhc--CCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccE
Q 003260 488 ELDR--GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565 (835)
Q Consensus 488 ~l~~--ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~ 565 (835)
.+.+ -.|.||||+....|+.++..|... |+.+.++.|.|++.+|..++..+++-..+|||+|+..++|||-|+||.
T Consensus 266 vf~~ipy~QAlVF~~~~sra~~~a~~L~ss--G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNL 343 (980)
T KOG4284|consen 266 VFKSIPYVQALVFCDQISRAEPIATHLKSS--GLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNL 343 (980)
T ss_pred HHhhCchHHHHhhhhhhhhhhHHHHHhhcc--CCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccce
Confidence 3333 258999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 566 VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
||+.|+|. +-..|.||+|||||.|..|.+++|+..+.
T Consensus 344 VVNiD~p~-d~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 344 VVNIDAPA-DEETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred EEecCCCc-chHHHHHHhhhcccccccceeEEEeccch
Confidence 99999997 89999999999999999999999987654
No 55
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-33 Score=332.37 Aligned_cols=311 Identities=30% Similarity=0.386 Sum_probs=256.8
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003260 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 279 ~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~ 358 (835)
...+++.|..|++.+.... ......|+.|.||||||++|+.++...+.+|++||+|||...|..|+.++|+.+|
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~---~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rF--- 269 (730)
T COG1198 196 WLALNQEQQAAVEAILSSL---GGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARF--- 269 (730)
T ss_pred ccccCHHHHHHHHHHHHhc---ccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHh---
Confidence 4578999999999998753 2245689999999999999999999999999999999999999999999999998
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHH----------HHhhh
Q 003260 359 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE----------KIASF 428 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e----------~l~~l 428 (835)
|.+|++++++.+..++...|.++.+|++.|||||.+.++ .+|++|++|||||+|...+++.+ .+...
T Consensus 270 -g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF--~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~ 346 (730)
T COG1198 270 -GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF--LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAK 346 (730)
T ss_pred -CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc--CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHH
Confidence 478999999999999999999999999999999999998 67999999999999987654432 23344
Q ss_pred cCCceEEEeecCCChhhHHHHHhcCCCcceecCCCC-------CccceeEEeccc---CHHHHHHHHHHHHhcCCeEEEE
Q 003260 429 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP-------ERLPIKTHLSAF---SKEKVISAIKYELDRGGQVFYV 498 (835)
Q Consensus 429 ~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~-------~r~~v~~~~~~~---~~~~l~~~i~~~l~~ggqvlVf 498 (835)
..++.+|+-||||.-+++..+..+......+..... ...++....... -...++++|...+.++.|+++|
T Consensus 347 ~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llf 426 (730)
T COG1198 347 KENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLF 426 (730)
T ss_pred HhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEE
Confidence 578999999999999999998777332222221111 011111111111 1257899999999999999999
Q ss_pred ecCc------------------------------------------------------------cChHHHHHHHHhhCCC
Q 003260 499 LPRI------------------------------------------------------------KGLEEPMDFLQQAFPG 518 (835)
Q Consensus 499 ~n~v------------------------------------------------------------~~~e~l~~~L~~~~p~ 518 (835)
+|++ -++|.+.+.|+..||+
T Consensus 427 lnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~ 506 (730)
T COG1198 427 LNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPG 506 (730)
T ss_pred EccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCC
Confidence 9872 2578999999999999
Q ss_pred CeEEEEeCCCCH--HHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCC------C-----ChhHHHHHhcc
Q 003260 519 VDIAIAHGQQYS--RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ------F-----GLAQLYQLRGR 585 (835)
Q Consensus 519 ~~v~~lhg~m~~--~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~------~-----sl~~l~Qr~GR 585 (835)
+++..+.++.+. ...+..+..|.+|+.+|||+|++++.|.|+||++.|.+.|++. | ....+.|..||
T Consensus 507 ~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGR 586 (730)
T COG1198 507 ARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGR 586 (730)
T ss_pred CcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhh
Confidence 999999998755 4577899999999999999999999999999999999988763 1 12457899999
Q ss_pred cCCCCCceEEEEE
Q 003260 586 VGRADKEAHAYLF 598 (835)
Q Consensus 586 aGR~g~~G~ay~l 598 (835)
+||.+++|.+++-
T Consensus 587 AgR~~~~G~VvIQ 599 (730)
T COG1198 587 AGRAGKPGEVVIQ 599 (730)
T ss_pred hccCCCCCeEEEE
Confidence 9999989988773
No 56
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-34 Score=340.31 Aligned_cols=330 Identities=22% Similarity=0.252 Sum_probs=258.1
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc--------CCCEEEEEcccH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--------AGKQAMVLAPTI 341 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~--------~g~qvlVLvPtr 341 (835)
++..++...+-.|||+|.+|||.|+. ++|+|.+|-||||||++|++|++.++. +|+.++|++||+
T Consensus 376 il~tlkkl~y~k~~~IQ~qAiP~Ims-------GrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtr 448 (997)
T KOG0334|consen 376 ILETLKKLGYEKPTPIQAQAIPAIMS-------GRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTR 448 (997)
T ss_pred HHHHHHHhcCCCCcchhhhhcchhcc-------CcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCH
Confidence 66667555555999999999999974 689999999999999999999997753 378999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc--------ccCCccEEEEcC
Q 003260 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV--------VYNNLGLLVVDE 413 (835)
Q Consensus 342 ~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l--------~~~~l~llVIDE 413 (835)
+||.|+++.+.. |....++++..++|+....+ ++..+++| +.|+|+||++..+.+ .+.+..++|+||
T Consensus 449 ela~QI~r~~~k-f~k~l~ir~v~vygg~~~~~---qiaelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~de 523 (997)
T KOG0334|consen 449 ELAMQIHREVRK-FLKLLGIRVVCVYGGSGISQ---QIAELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDE 523 (997)
T ss_pred HHHHHHHHHHHH-HHhhcCceEEEecCCccHHH---HHHHHhcC-CceEEeccchhhhhHhhcCCccccccccceeeech
Confidence 999999999987 55557999999999876655 67778889 999999999776532 334556999999
Q ss_pred cccc---ch--hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCc--cceeEEecccC-HHHH---H
Q 003260 414 EQRF---GV--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LPIKTHLSAFS-KEKV---I 482 (835)
Q Consensus 414 aHr~---g~--~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r--~~v~~~~~~~~-~~~l---~ 482 (835)
+|++ |+ .....|..+++..|++++|||.+......+..-+..+..+...-... ..|...+.... .+.. +
T Consensus 524 aDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL 603 (997)
T KOG0334|consen 524 ADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKL 603 (997)
T ss_pred hhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHH
Confidence 9995 43 22347788899999999999986555555544444222222211111 12222222222 2222 2
Q ss_pred HHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCC
Q 003260 483 SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562 (835)
Q Consensus 483 ~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~ 562 (835)
..+..+....++++|||.+.+.|+.+.+.|.+. ++.+..+||+.++.+|+.++++|+++...+||||+++++|+|+++
T Consensus 604 ~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~a--g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~ 681 (997)
T KOG0334|consen 604 LELLGERYEDGKTIIFVDKQEKADALLRDLQKA--GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKE 681 (997)
T ss_pred HHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhc--CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhccccccc
Confidence 233334455899999999999999999999977 888888999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHH
Q 003260 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAAL 616 (835)
Q Consensus 563 v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i 616 (835)
+..||+|++|. ..++|+||.||+||+|+.|.||+|.++++. .++-.-.+++
T Consensus 682 l~Lvvnyd~pn-h~edyvhR~gRTgragrkg~AvtFi~p~q~--~~a~dl~~al 732 (997)
T KOG0334|consen 682 LILVVNYDFPN-HYEDYVHRVGRTGRAGRKGAAVTFITPDQL--KYAGDLCKAL 732 (997)
T ss_pred ceEEEEcccch-hHHHHHHHhcccccCCccceeEEEeChHHh--hhHHHHHHHH
Confidence 99999999998 789999999999999999999999998543 3333333444
No 57
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.7e-35 Score=324.86 Aligned_cols=377 Identities=18% Similarity=0.203 Sum_probs=298.1
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHH--HcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCV--VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~--l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~ 380 (835)
..-++|.|.||||||.+.-..+..+ ...|+.+.|..|+|+.|..++.++.+.++.-.|..|++..++.++..
T Consensus 280 ~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcTS------ 353 (902)
T KOG0923|consen 280 HQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCTS------ 353 (902)
T ss_pred CcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEeccccC------
Confidence 3568899999999999854444433 13356699999999999999999999998877889999999877654
Q ss_pred hhhcCCcceeeccHHHhhc----ccccCCccEEEEcCccc------cchhhHHHHhhhcCCceEEEeecCCChhhHHHHH
Q 003260 381 MIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQR------FGVKQKEKIASFKISVDVLTLSATPIPRTLYLAL 450 (835)
Q Consensus 381 ~l~~G~~dIIVgT~~~L~~----~l~~~~l~llVIDEaHr------~g~~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~ 450 (835)
.+.-|-+.|.++|.+ ...+..+++|||||||+ ..+.....+.+++++.++|+.|||+.... +.
T Consensus 354 ----ekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT~DAek---FS 426 (902)
T KOG0923|consen 354 ----EKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATMDAEK---FS 426 (902)
T ss_pred ----cceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccccCHHH---HH
Confidence 335567888887764 45788999999999997 24455677888999999999999995554 45
Q ss_pred hcCCCcceecCCCCCccceeEEecccCHHHHHHHHHHHH------hcCCeEEEEecCccChHHHHHHHHhhC-------C
Q 003260 451 TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYEL------DRGGQVFYVLPRIKGLEEPMDFLQQAF-------P 517 (835)
Q Consensus 451 ~g~~d~s~I~~~p~~r~~v~~~~~~~~~~~l~~~i~~~l------~~ggqvlVf~n~v~~~e~l~~~L~~~~-------p 517 (835)
.++.+.++... |..|+||.+++........+++....+ +..|.+|||....++++.+.+.|.++. +
T Consensus 427 ~fFDdapIF~i-PGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~ 505 (902)
T KOG0923|consen 427 AFFDDAPIFRI-PGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIR 505 (902)
T ss_pred HhccCCcEEec-cCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccc
Confidence 66677777665 688999999998887777777665544 456999999999998888877776643 4
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCC-----------------CChhHHH
Q 003260 518 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ-----------------FGLAQLY 580 (835)
Q Consensus 518 ~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~-----------------~sl~~l~ 580 (835)
++-++++|+.++.+.+.+|++.-..|..+|++||+|+++.|.|+++++||+-+... .|-++..
T Consensus 506 eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~ 585 (902)
T KOG0923|consen 506 ELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASAN 585 (902)
T ss_pred eEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhh
Confidence 56799999999999999999999999999999999999999999999999755321 1346778
Q ss_pred HHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHHHHHH
Q 003260 581 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFE 660 (835)
Q Consensus 581 Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dl~irg~g~~lg~~q~g~~~~vg~~~y~~ 660 (835)
||+||+||.| +|.||.+|+...+..+......+.|++.+. .+..|.++.| |.-|++.+...+.+ +.+.+..
T Consensus 586 QRaGRAGRtg-PGKCfRLYt~~aY~~eLE~~t~PEIqRtnL--~nvVL~LkSL---GI~Dl~~FdFmDpP---p~etL~~ 656 (902)
T KOG0923|consen 586 QRAGRAGRTG-PGKCFRLYTAWAYEHELEEMTVPEIQRTNL--GNVVLLLKSL---GIHDLIHFDFLDPP---PTETLLK 656 (902)
T ss_pred hhccccCCCC-CCceEEeechhhhhhhhccCCCcceeeccc--hhHHHHHHhc---CcchhcccccCCCC---ChHHHHH
Confidence 9999999997 899999999877776666677788888766 6888888888 45566666655544 3444443
Q ss_pred HHHH--HHhcccccccccccCcceEEeeecCCCCccccccccCCc
Q 003260 661 MLFE--SLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENP 703 (835)
Q Consensus 661 ~l~~--ai~~~~~~~~~~~~~g~~~~~l~idp~~~~~~i~~~~~~ 703 (835)
.|+. ||.++. +....|.+|+.|+++|+||++++.++.+...+
T Consensus 657 aLE~LyaLGALn-~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~ 700 (902)
T KOG0923|consen 657 ALEQLYALGALN-HLGELTKLGRRMAEFPVDPMLSKMIVASEKYK 700 (902)
T ss_pred HHHHHHHhhccc-cccchhhhhhhhhhcCCCHHHHhHHhhhcccc
Confidence 3332 454544 33456889999999999999999999987665
No 58
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=5.3e-34 Score=341.29 Aligned_cols=309 Identities=23% Similarity=0.297 Sum_probs=230.4
Q ss_pred CCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-CCEEEEEcccHHHHHHHHHHHHHhhc
Q 003260 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 278 f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-g~qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
+.-++.|.|+.|+....- + +.|+|||+|||||||++|+++++..+.+ +.+++|+||+++||.|.+++|+ +|.
T Consensus 28 ~~~el~~~qq~av~~~~~---~---~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~-~~~ 100 (766)
T COG1204 28 GIDELFNPQQEAVEKGLL---S---DENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFS-RLE 100 (766)
T ss_pred ChHHhhHHHHHHhhcccc---C---CCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhh-hHH
Confidence 333888999999877653 1 6899999999999999999999999887 4899999999999999999999 577
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCccccchhhH--------H
Q 003260 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFGVKQK--------E 423 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaHr~g~~~~--------e 423 (835)
.+ |++|+..+|+..... +.+ .+++|+|+||+.+.. .....++++|||||+|..+...+ .
T Consensus 101 ~~-GirV~~~TgD~~~~~--~~l-----~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~ 172 (766)
T COG1204 101 EL-GIRVGISTGDYDLDD--ERL-----ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVA 172 (766)
T ss_pred hc-CCEEEEecCCcccch--hhh-----ccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHH
Confidence 77 899999999765432 122 458999999987742 22346899999999998866522 2
Q ss_pred HHhhhcCCceEEEeecCCChh-hHHHHHhcCCCcceecCCCCCc-cce-eE-Eec--------ccCHHHHHHHHHHHHhc
Q 003260 424 KIASFKISVDVLTLSATPIPR-TLYLALTGFRDASLISTPPPER-LPI-KT-HLS--------AFSKEKVISAIKYELDR 491 (835)
Q Consensus 424 ~l~~l~~~~~vL~lSATp~p~-tl~~~~~g~~d~s~I~~~p~~r-~~v-~~-~~~--------~~~~~~l~~~i~~~l~~ 491 (835)
.+.......+++++|||.+.- .+..++..-...+.....|..+ .+. .. ... ....+...+.+...+..
T Consensus 173 r~~~~~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~ 252 (766)
T COG1204 173 RMRRLNELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAE 252 (766)
T ss_pred HHHhhCcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhc
Confidence 233344558999999997433 2332222211111111111111 111 11 111 11335678888888999
Q ss_pred CCeEEEEecCccChHHHHHHHHhhC-------------------C----------------CCeEEEEeCCCCHHHHHHH
Q 003260 492 GGQVFYVLPRIKGLEEPMDFLQQAF-------------------P----------------GVDIAIAHGQQYSRQLEET 536 (835)
Q Consensus 492 ggqvlVf~n~v~~~e~l~~~L~~~~-------------------p----------------~~~v~~lhg~m~~~ere~v 536 (835)
++|++|||+++..+...++.|...+ . ...++++|++|+.++|..+
T Consensus 253 ~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~v 332 (766)
T COG1204 253 GGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLV 332 (766)
T ss_pred CCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHH
Confidence 9999999999998888888777311 0 0258899999999999999
Q ss_pred HHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCC---------hhHHHHHhcccCCCC--CceEEEEEecCC
Q 003260 537 MEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG---------LAQLYQLRGRVGRAD--KEAHAYLFYPDK 602 (835)
Q Consensus 537 l~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~s---------l~~l~Qr~GRaGR~g--~~G~ay~l~~~~ 602 (835)
.+.|+.|.++|||||++++.|+|+| +++||+-|..+|+ ..++.|+.|||||.| ..|.++++.+..
T Consensus 333 E~~Fr~g~ikVlv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~ 408 (766)
T COG1204 333 EDAFRKGKIKVLVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSH 408 (766)
T ss_pred HHHHhcCCceEEEechHHhhhcCCc-ceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCc
Confidence 9999999999999999999999999 9999987665544 457899999999998 567888887544
No 59
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-34 Score=326.63 Aligned_cols=378 Identities=17% Similarity=0.241 Sum_probs=292.0
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHH-HcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~-l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
..-++|.|+||||||.+.-..+.++ +...+.+.|..|+|..|..++.++.+.++...|-.|++..+|.+...
T Consensus 66 nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~ts------- 138 (674)
T KOG0922|consen 66 NQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDSTS------- 138 (674)
T ss_pred CCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecccCC-------
Confidence 4678999999999999865444443 23334599999999999999999999998888999999999876544
Q ss_pred hhcCCcceeeccHHHhhcc----cccCCccEEEEcCcccc------chhhHHHHhhhcCCceEEEeecCCChhhHHHHHh
Q 003260 382 IKHGHLNIIVGTHSLLGSR----VVYNNLGLLVVDEEQRF------GVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451 (835)
Q Consensus 382 l~~G~~dIIVgT~~~L~~~----l~~~~l~llVIDEaHr~------g~~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~ 451 (835)
....|.+.|.++|.+. ..+..+++|||||||+= ......++.+.+++.++|.+|||...+.+ ..
T Consensus 139 ---~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATlda~kf---S~ 212 (674)
T KOG0922|consen 139 ---KDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLDAEKF---SE 212 (674)
T ss_pred ---CceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeeecHHHH---HH
Confidence 4578999999988764 35789999999999973 22234556666788999999999965543 44
Q ss_pred cCCCcceecCCCCCccceeEEecccCHHHHHHHHHHHH------hcCCeEEEEecCccChHHHHHHHHhhCCCC------
Q 003260 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYEL------DRGGQVFYVLPRIKGLEEPMDFLQQAFPGV------ 519 (835)
Q Consensus 452 g~~d~s~I~~~p~~r~~v~~~~~~~~~~~l~~~i~~~l------~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~------ 519 (835)
++....++.+ |...+||+..+......+.+++....+ ...|.+|||.+..++++.+++.|.+.....
T Consensus 213 yF~~a~i~~i-~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~ 291 (674)
T KOG0922|consen 213 YFNNAPILTI-PGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPE 291 (674)
T ss_pred HhcCCceEee-cCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcc
Confidence 4555565555 677899999887766555554443322 345899999999999999999998764211
Q ss_pred eEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCC-----------------CChhHHHHH
Q 003260 520 DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ-----------------FGLAQLYQL 582 (835)
Q Consensus 520 ~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~-----------------~sl~~l~Qr 582 (835)
-+.++||.|+.+++.+++..-..|..+|++||+|+|+.|.||++.+||+.+.-. .|.++..||
T Consensus 292 ~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QR 371 (674)
T KOG0922|consen 292 LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQR 371 (674)
T ss_pred eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhh
Confidence 467899999999999999999999999999999999999999999999755321 145788999
Q ss_pred hcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHHHHHHHH
Q 003260 583 RGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML 662 (835)
Q Consensus 583 ~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dl~irg~g~~lg~~q~g~~~~vg~~~y~~~l 662 (835)
.|||||.+ +|.||.+|+++++ ........+.|++++. +...+.++-| |.+|++.+.....+.......-.+.|
T Consensus 372 aGRAGRt~-pGkcyRLYte~~~-~~~~~~~~PEI~R~~L--s~~vL~Lkal---gi~d~l~F~f~d~P~~~~l~~AL~~L 444 (674)
T KOG0922|consen 372 AGRAGRTG-PGKCYRLYTESAY-DKMPLQTVPEIQRVNL--SSAVLQLKAL---GINDPLRFPFIDPPPPEALEEALEEL 444 (674)
T ss_pred cccCCCCC-CceEEEeeeHHHH-hhcccCCCCceeeech--HHHHHHHHhc---CCCCcccCCCCCCCChHHHHHHHHHH
Confidence 99999996 8999999999887 6667777778887765 5666666665 77899999888777655544333333
Q ss_pred HHHHhcccccccccccCcceEEeeecCCCCccccccccCC
Q 003260 663 FESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLEN 702 (835)
Q Consensus 663 ~~ai~~~~~~~~~~~~~g~~~~~l~idp~~~~~~i~~~~~ 702 (835)
. .+.++++......++|..++++|++|.+++.++.+.+.
T Consensus 445 ~-~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~ 483 (674)
T KOG0922|consen 445 Y-SLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSEL 483 (674)
T ss_pred H-hcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhcccc
Confidence 3 34455544444344999999999999999988877443
No 60
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.4e-33 Score=333.67 Aligned_cols=302 Identities=16% Similarity=0.196 Sum_probs=210.4
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCC-cEEEEccCCCcccHHHHHHHHHHH--cCCCEEE-EEcccHHHHHHH
Q 003260 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPM-DRLICGDVGFGKTEVALRAIFCVV--SAGKQAM-VLAPTIVLAKQH 347 (835)
Q Consensus 272 ~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~-d~Ll~a~TGsGKT~val~a~l~~l--~~g~qvl-VLvPtr~LA~Q~ 347 (835)
+-|.+..+|+|||+|.++|+.++. ++ ++++++|||||||.++..+++... ....+.+ +++|||+||.|+
T Consensus 6 ~ff~~~~G~~PtpiQ~~~i~~il~-------G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi 78 (844)
T TIGR02621 6 EWYQGLHGYSPFPWQLSLAERFVA-------GQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQV 78 (844)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHc-------CCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHH
Confidence 456666678899999999999874 33 578889999999986543333211 1234455 477999999999
Q ss_pred HHHHHHhhcCC----------------------CCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccc---
Q 003260 348 FDVVSERFSKY----------------------PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV--- 402 (835)
Q Consensus 348 ~~~~~~~f~~~----------------------~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~--- 402 (835)
++++.+....+ .++++..+.|+.+... ++..+..+ ++|||||+..+.+...
T Consensus 79 ~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~---q~~~l~~~-p~IIVgT~D~i~sr~L~~g 154 (844)
T TIGR02621 79 TEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADND---EWMLDPHR-PAVIVGTVDMIGSRLLFSG 154 (844)
T ss_pred HHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHH---HHHhcCCC-CcEEEECHHHHcCCccccc
Confidence 99998744322 1488999999977654 56666665 8999999987765432
Q ss_pred --------------cCCccEEEEcCcccc-ch-hhHHHHhhh---cC---CceEEEeecCCChhhHHHHHhcCCCcceec
Q 003260 403 --------------YNNLGLLVVDEEQRF-GV-KQKEKIASF---KI---SVDVLTLSATPIPRTLYLALTGFRDASLIS 460 (835)
Q Consensus 403 --------------~~~l~llVIDEaHr~-g~-~~~e~l~~l---~~---~~~vL~lSATp~p~tl~~~~~g~~d~s~I~ 460 (835)
+.++.+||+||||.. ++ ...+.|... .. +.|+++||||++............+...+.
T Consensus 155 Yg~~~~~~pi~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~ 234 (844)
T TIGR02621 155 YGCGFKSRPLHAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHP 234 (844)
T ss_pred cccccccccchhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceee
Confidence 578899999999942 33 223333332 22 268999999997655444433333332222
Q ss_pred CCCCCcc--ceeEEecccCHH---HHHHHHHHHH-hcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHH
Q 003260 461 TPPPERL--PIKTHLSAFSKE---KVISAIKYEL-DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLE 534 (835)
Q Consensus 461 ~~p~~r~--~v~~~~~~~~~~---~l~~~i~~~l-~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere 534 (835)
....... .+..++...... .+...+...+ ..+++++||||+++.++.+++.|.+. ++ ..+||+|++.+|+
T Consensus 235 V~~~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~--g~--~lLHG~m~q~dR~ 310 (844)
T TIGR02621 235 VLKKRLAAKKIVKLVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKE--KF--ELLTGTLRGAERD 310 (844)
T ss_pred cccccccccceEEEEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhc--CC--eEeeCCCCHHHHh
Confidence 2211111 112222211111 1222222222 35689999999999999999999876 43 8999999999999
Q ss_pred -----HHHHHhhc----CC-------eeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCc
Q 003260 535 -----ETMEKFAQ----GA-------IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE 592 (835)
Q Consensus 535 -----~vl~~F~~----g~-------~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~ 592 (835)
.+++.|++ |. ..|||||+++++||||+. ++||++.+| .++|+||+||+||.|+.
T Consensus 311 ~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP---~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 311 DLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP---FESMQQRFGRVNRFGEL 380 (844)
T ss_pred hHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC---HHHHHHHhcccCCCCCC
Confidence 88999987 44 689999999999999995 888886655 58999999999999874
No 61
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=3.8e-33 Score=324.51 Aligned_cols=303 Identities=16% Similarity=0.178 Sum_probs=213.0
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCC-EEEEEcccHHHHHHHHHHHHHhhcC
Q 003260 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK-QAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 279 ~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~-qvlVLvPtr~LA~Q~~~~~~~~f~~ 357 (835)
.+.|+|+|.+|++.+++ +.+.++++|||+|||.++...+...+..+. ++||||||++|+.||.+++.+ |..
T Consensus 112 ~~~~r~~Q~~av~~~l~-------~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~-~~~ 183 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK-------NNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVD-YRL 183 (501)
T ss_pred cCCCCHHHHHHHHHHHh-------cCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHH-hcc
Confidence 36899999999988875 246899999999999987654433344444 999999999999999999987 555
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc--ccCCccEEEEcCccccchhhHHHH-hhhcCCceE
Q 003260 358 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV--VYNNLGLLVVDEEQRFGVKQKEKI-ASFKISVDV 434 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l--~~~~l~llVIDEaHr~g~~~~e~l-~~l~~~~~v 434 (835)
.+...+..+.++.... ...+|+|+|++.+.+.. .+.++++||+||||++.......+ ..+....++
T Consensus 184 ~~~~~~~~i~~g~~~~-----------~~~~I~VaT~qsl~~~~~~~~~~~~~iIvDEaH~~~~~~~~~il~~~~~~~~~ 252 (501)
T PHA02558 184 FPREAMHKIYSGTAKD-----------TDAPIVVSTWQSAVKQPKEWFDQFGMVIVDECHLFTGKSLTSIITKLDNCKFK 252 (501)
T ss_pred ccccceeEEecCcccC-----------CCCCEEEeeHHHHhhchhhhccccCEEEEEchhcccchhHHHHHHhhhccceE
Confidence 4444554444442211 23689999999887543 468999999999999876555443 444456789
Q ss_pred EEeecCCChhhH-HHHHhcCCCcceecCC-----CCC-ccce--eEEe-------------ccc------------CHHH
Q 003260 435 LTLSATPIPRTL-YLALTGFRDASLISTP-----PPE-RLPI--KTHL-------------SAF------------SKEK 480 (835)
Q Consensus 435 L~lSATp~p~tl-~~~~~g~~d~s~I~~~-----p~~-r~~v--~~~~-------------~~~------------~~~~ 480 (835)
++|||||..... .....++..+...... ... ..+. .... ..+ ....
T Consensus 253 lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~ 332 (501)
T PHA02558 253 FGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKW 332 (501)
T ss_pred EEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHH
Confidence 999999954221 1111111110000000 000 0000 0000 000 0011
Q ss_pred HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEc-CcCCcCCC
Q 003260 481 VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICT-NIVESGLD 559 (835)
Q Consensus 481 l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT-~iie~GID 559 (835)
+...+......+.+++|||+++++++.+++.|... +.++..+||+|+.++|+.+++.|++|+..||||| +++++|+|
T Consensus 333 I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~--g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~D 410 (501)
T PHA02558 333 IANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKV--YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGIS 410 (501)
T ss_pred HHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccc
Confidence 22233333356788999999999999999999997 7799999999999999999999999999999998 89999999
Q ss_pred CCCccEEEEecCCCCChhHHHHHhcccCCCCCc---eEEEEEecCCC
Q 003260 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE---AHAYLFYPDKS 603 (835)
Q Consensus 560 Ip~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~---G~ay~l~~~~~ 603 (835)
+|++++||+..++. +...|.||+||++|.+.. ...|-+++.-.
T Consensus 411 ip~ld~vIl~~p~~-s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 411 IKNLHHVIFAHPSK-SKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred cccccEEEEecCCc-chhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 99999999888886 789999999999998743 34454555433
No 62
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.1e-33 Score=305.55 Aligned_cols=309 Identities=20% Similarity=0.286 Sum_probs=228.3
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-CCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-g~qvlVLvPtr~LA~Q~~~~~~~~f~~~ 358 (835)
.+++.+|.......+. .|+|++.|||.|||.+|++.+...+.. ++++++|+||+-|+.||++.+.+ +...
T Consensus 14 ie~R~YQ~~i~a~al~--------~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~-v~~i 84 (542)
T COG1111 14 IEPRLYQLNIAAKALF--------KNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRK-VTGI 84 (542)
T ss_pred ccHHHHHHHHHHHHhh--------cCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHH-HhCC
Confidence 4788999988777663 589999999999999998888766543 44899999999999999999998 4455
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----cccCCccEEEEcCcccc-chhh----HHHHhhh
Q 003260 359 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRF-GVKQ----KEKIASF 428 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l~~~~l~llVIDEaHr~-g~~~----~e~l~~l 428 (835)
|.-.++.++|..++.+|...|. +.+|+|+||+.+.++ +++.++.+||+|||||. |... .+.....
T Consensus 85 p~~~i~~ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~ 159 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS 159 (542)
T ss_pred ChhheeeecCCCChHHHHHHHh-----hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHh
Confidence 5678999999999999999884 468999999987654 46788999999999995 4322 2223444
Q ss_pred cCCceEEEeecCCChhhH--HHH-----------------------------------------------------HhcC
Q 003260 429 KISVDVLTLSATPIPRTL--YLA-----------------------------------------------------LTGF 453 (835)
Q Consensus 429 ~~~~~vL~lSATp~p~tl--~~~-----------------------------------------------------~~g~ 453 (835)
..+..+|+|||||..... ... +..+
T Consensus 160 ~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L 239 (542)
T COG1111 160 AKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPL 239 (542)
T ss_pred ccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999852110 000 0000
Q ss_pred CCcceecCCC-------------------C-Cc--c-------------------------ce-----------------
Q 003260 454 RDASLISTPP-------------------P-ER--L-------------------------PI----------------- 469 (835)
Q Consensus 454 ~d~s~I~~~p-------------------~-~r--~-------------------------~v----------------- 469 (835)
.+..++.... . .+ . ++
T Consensus 240 ~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk 319 (542)
T COG1111 240 KELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSK 319 (542)
T ss_pred HHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchH
Confidence 0000000000 0 00 0 00
Q ss_pred ----------------------eEEecccCHHHHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEE-
Q 003260 470 ----------------------KTHLSAFSKEKVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA- 524 (835)
Q Consensus 470 ----------------------~~~~~~~~~~~l~~~i~~~l--~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~l- 524 (835)
...+....-+.+.+.+.+.+ ..+.+++||++.+++++.+.+.|.+..+.+++.++
T Consensus 320 ~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiG 399 (542)
T COG1111 320 AAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIG 399 (542)
T ss_pred HHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEee
Confidence 00000001122334444444 23468999999999999999999999877662332
Q ss_pred ------eCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEE
Q 003260 525 ------HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLF 598 (835)
Q Consensus 525 ------hg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l 598 (835)
..||++.++.+++++|++|+++|||||+++|+|+|||.++.||.|++-. |.-..+||+||+||. +.|.+|+|
T Consensus 400 Qa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvp-SeIR~IQR~GRTGR~-r~Grv~vL 477 (542)
T COG1111 400 QASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVP-SEIRSIQRKGRTGRK-RKGRVVVL 477 (542)
T ss_pred ccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCc-HHHHHHHhhCccccC-CCCeEEEE
Confidence 1469999999999999999999999999999999999999999999987 888999999999998 89999999
Q ss_pred ecCCCc
Q 003260 599 YPDKSL 604 (835)
Q Consensus 599 ~~~~~~ 604 (835)
++..+.
T Consensus 478 vt~gtr 483 (542)
T COG1111 478 VTEGTR 483 (542)
T ss_pred EecCch
Confidence 998743
No 63
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-34 Score=307.37 Aligned_cols=327 Identities=21% Similarity=0.229 Sum_probs=269.4
Q ss_pred CCCCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC----CCEEEEE
Q 003260 263 PPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVL 337 (835)
Q Consensus 263 ~~~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~----g~qvlVL 337 (835)
..+..+. ..+++...++..|||+|++.|+.+++ ++|++-.+-||||||.+|++|+++.+.. |.+++++
T Consensus 24 qsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe-------~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralil 96 (529)
T KOG0337|consen 24 QSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILE-------GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALIL 96 (529)
T ss_pred cccCCCHHHHHHHHHhhcCCCCchhcccccceee-------ccccceeeecCCcchhhHHHHHHHHHhhccccccceeec
Confidence 4456666 78899999999999999999999985 4789999999999999999999988765 4599999
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEc
Q 003260 338 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVD 412 (835)
Q Consensus 338 vPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVID 412 (835)
.||++||.|..+.+++ ++.+.++++.+++|+.+..++ +..+. +++|||++||+++.. .+.++.+.+||+|
T Consensus 97 sptreLa~qtlkvvkd-lgrgt~lr~s~~~ggD~~eeq---f~~l~-~npDii~ATpgr~~h~~vem~l~l~sveyVVfd 171 (529)
T KOG0337|consen 97 SPTRELALQTLKVVKD-LGRGTKLRQSLLVGGDSIEEQ---FILLN-ENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFD 171 (529)
T ss_pred cCcHHHHHHHHHHHHH-hccccchhhhhhcccchHHHH---HHHhc-cCCCEEEecCceeeeeehheeccccceeeeeeh
Confidence 9999999999999987 888888999999998776654 44443 458999999998864 3567889999999
Q ss_pred Ccccc---ch--hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCccc--eeEEecccCHHHHHHHH
Q 003260 413 EEQRF---GV--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP--IKTHLSAFSKEKVISAI 485 (835)
Q Consensus 413 EaHr~---g~--~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~~--v~~~~~~~~~~~l~~~i 485 (835)
|++++ |+ ...+.+.+++.+.|.++||||.+.....++..|+.++.++......... .+........+....++
T Consensus 172 Eadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaL 251 (529)
T KOG0337|consen 172 EADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAAL 251 (529)
T ss_pred hhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHH
Confidence 99984 54 3457788888899999999998776678889999888887643322221 11111122233334444
Q ss_pred HHHHhc---CCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCC
Q 003260 486 KYELDR---GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562 (835)
Q Consensus 486 ~~~l~~---ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~ 562 (835)
+..+.. ..+.++|+++..+++.+...|... ++.+..++|.|++..|..-+.+|..++..+||.|+++++|+|||.
T Consensus 252 l~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~--g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~dipl 329 (529)
T KOG0337|consen 252 LSILGGRIKDKQTIVFVATKHHVEYVRGLLRDF--GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPL 329 (529)
T ss_pred HHHHhccccccceeEEecccchHHHHHHHHHhc--CCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcc
Confidence 444432 347999999999999999999988 888999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003260 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 563 v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
.+.||++|.|. +..-|+||+||+.|+|+.|.+|.++.+.+.
T Consensus 330 ldnvinyd~p~-~~klFvhRVgr~aragrtg~aYs~V~~~~~ 370 (529)
T KOG0337|consen 330 LDNVINYDFPP-DDKLFVHRVGRVARAGRTGRAYSLVASTDD 370 (529)
T ss_pred ccccccccCCC-CCceEEEEecchhhccccceEEEEEecccc
Confidence 99999999987 778899999999999999999999987754
No 64
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=3.3e-33 Score=348.86 Aligned_cols=287 Identities=17% Similarity=0.187 Sum_probs=209.4
Q ss_pred EEccCCCcccHHHHHHHHHHHc-------------CCCEEEEEcccHHHHHHHHHHHHHhh----------c-CCCCcEE
Q 003260 308 ICGDVGFGKTEVALRAIFCVVS-------------AGKQAMVLAPTIVLAKQHFDVVSERF----------S-KYPDIKV 363 (835)
Q Consensus 308 l~a~TGsGKT~val~a~l~~l~-------------~g~qvlVLvPtr~LA~Q~~~~~~~~f----------~-~~~gi~V 363 (835)
|++|||||||++|++|++..+. ++.++|||+|+++|+.|++++++..+ + ..++++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999998887652 24689999999999999999986422 1 1247899
Q ss_pred EEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc------cccCCccEEEEcCccccch-----h---hHHHHhhh-
Q 003260 364 GLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNNLGLLVVDEEQRFGV-----K---QKEKIASF- 428 (835)
Q Consensus 364 ~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~------l~~~~l~llVIDEaHr~g~-----~---~~e~l~~l- 428 (835)
+..+|+.+..++...+ ...++|+|+||+.|... ..++++++|||||+|.+.. . ..+.|..+
T Consensus 81 ~vrtGDt~~~eR~rll----~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~ 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLT----RNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL 156 (1490)
T ss_pred EEEECCCCHHHHHHHh----cCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC
Confidence 9999998887765433 24589999999977532 2478999999999998742 1 23344444
Q ss_pred cCCceEEEeecCCChhh-HHHHHhcCCCcceecCCCCC-ccceeEEecccCH-----------------------HHHHH
Q 003260 429 KISVDVLTLSATPIPRT-LYLALTGFRDASLISTPPPE-RLPIKTHLSAFSK-----------------------EKVIS 483 (835)
Q Consensus 429 ~~~~~vL~lSATp~p~t-l~~~~~g~~d~s~I~~~p~~-r~~v~~~~~~~~~-----------------------~~l~~ 483 (835)
..+.|+|++|||..+.. ...++.+-+...++. ++.. ..++...+...+. ..+..
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRPVTVVN-PPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEEC-CCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 35789999999986532 222222212223332 2222 2222222211110 01223
Q ss_pred HHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC-------------------------------CCeEEEEeCCCCHHH
Q 003260 484 AIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP-------------------------------GVDIAIAHGQQYSRQ 532 (835)
Q Consensus 484 ~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p-------------------------------~~~v~~lhg~m~~~e 532 (835)
.+...+..+.++|||||++..++.++..|++..+ ...+.++||+|++++
T Consensus 236 ~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkee 315 (1490)
T PRK09751 236 GILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQ 315 (1490)
T ss_pred HHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHH
Confidence 4445556778999999999999999999986532 122678999999999
Q ss_pred HHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCC-CCceEEEEEec
Q 003260 533 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA-DKEAHAYLFYP 600 (835)
Q Consensus 533 re~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~-g~~G~ay~l~~ 600 (835)
|..+++.|++|++++||||++++.|||++++++||+++.|. +.++|+||+||+||. |..+.++++..
T Consensus 316 R~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~-sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 316 RAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPL-SVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred HHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCC-CHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 99999999999999999999999999999999999999997 999999999999996 34456664443
No 65
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1e-33 Score=347.96 Aligned_cols=375 Identities=15% Similarity=0.216 Sum_probs=252.1
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCC--CEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g--~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~ 380 (835)
+..++|+|+||||||++.-..++ ....+ ..+++..|++..|...+.++.+.++...|..|++-.++.+..
T Consensus 89 ~~VviI~GeTGSGKTTqlPq~ll-e~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vrf~~~~------- 160 (1294)
T PRK11131 89 HQVVIVAGETGSGKTTQLPKICL-ELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRFNDQV------- 160 (1294)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH-HcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeecCcccc-------
Confidence 35688899999999996322222 22223 367778898766666666666666543356677766654322
Q ss_pred hhhcCCcceeeccHHHhhcc----cccCCccEEEEcCccc-c---chh--hHHHHhhhcCCceEEEeecCCChhhHHHHH
Q 003260 381 MIKHGHLNIIVGTHSLLGSR----VVYNNLGLLVVDEEQR-F---GVK--QKEKIASFKISVDVLTLSATPIPRTLYLAL 450 (835)
Q Consensus 381 ~l~~G~~dIIVgT~~~L~~~----l~~~~l~llVIDEaHr-~---g~~--~~e~l~~l~~~~~vL~lSATp~p~tl~~~~ 450 (835)
+..++|+|+|++.|.+. ..+.++++|||||+|+ . ++. ....+...+++.++|+||||+.+..+ .
T Consensus 161 ---s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSATid~e~f---s 234 (1294)
T PRK11131 161 ---SDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERF---S 234 (1294)
T ss_pred ---CCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeCCCCHHHH---H
Confidence 13489999999988643 3478999999999995 2 111 11222223467899999999976533 3
Q ss_pred hcCCCcceecCCCCCccceeEEecccCH------HHHHHHHHHH----H-hcCCeEEEEecCccChHHHHHHHHhh-CCC
Q 003260 451 TGFRDASLISTPPPERLPIKTHLSAFSK------EKVISAIKYE----L-DRGGQVFYVLPRIKGLEEPMDFLQQA-FPG 518 (835)
Q Consensus 451 ~g~~d~s~I~~~p~~r~~v~~~~~~~~~------~~l~~~i~~~----l-~~ggqvlVf~n~v~~~e~l~~~L~~~-~p~ 518 (835)
..+.+.+++.++ ...+++..++..... ......+... . ...+++|||+|+..+++.+++.|... ++.
T Consensus 235 ~~F~~apvI~V~-Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~ 313 (1294)
T PRK11131 235 RHFNNAPIIEVS-GRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRH 313 (1294)
T ss_pred HHcCCCCEEEEc-CccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCc
Confidence 334455566554 344666665543321 1222222221 1 24589999999999999999999876 234
Q ss_pred CeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecC---------------C--CCChhHHHH
Q 003260 519 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV---------------Q--QFGLAQLYQ 581 (835)
Q Consensus 519 ~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~---------------p--~~sl~~l~Q 581 (835)
..+.++||+|++.+|..+++. .|..+|||||+++++|||||++++||+++. | ..|.++|.|
T Consensus 314 ~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~Q 391 (1294)
T PRK11131 314 TEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQ 391 (1294)
T ss_pred ceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhh
Confidence 568899999999999999986 478999999999999999999999999863 1 124578999
Q ss_pred HhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHHHHHHH
Q 003260 582 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEM 661 (835)
Q Consensus 582 r~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dl~irg~g~~lg~~q~g~~~~vg~~~y~~~ 661 (835)
|+||+||. ++|.||.+|+++++.. ....-.++|.+.+. .++.+.++.+ |.+++..+.....+....+.--.+.
T Consensus 392 RaGRAGR~-~~G~c~rLyte~d~~~-~~~~~~PEIlR~~L--~~viL~lk~l---gl~di~~F~fldpP~~~~i~~al~~ 464 (1294)
T PRK11131 392 RKGRCGRV-SEGICIRLYSEDDFLS-RPEFTDPEILRTNL--ASVILQMTAL---GLGDIAAFPFVEAPDKRNIQDGVRL 464 (1294)
T ss_pred hccccCCC-CCcEEEEeCCHHHHHh-hhcccCCccccCCH--HHHHHHHHHc---CCCCcceeeCCCCCCHHHHHHHHHH
Confidence 99999999 6899999999765432 12222334544433 4556666654 5566665554444443333333333
Q ss_pred HHHHHhccccc----ccccccCcceEEeeecCCCCccccccccCC
Q 003260 662 LFESLSKVDEH----CVISVPYKSVQIDININPRLPSEYINHLEN 702 (835)
Q Consensus 662 l~~ai~~~~~~----~~~~~~~g~~~~~l~idp~~~~~~i~~~~~ 702 (835)
|. .+.+++.+ ....|++|..++.||+||.+++.++.+...
T Consensus 465 L~-~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~ 508 (1294)
T PRK11131 465 LE-ELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKH 508 (1294)
T ss_pred HH-HCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhc
Confidence 33 23344321 234689999999999999999999877554
No 66
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.5e-33 Score=345.71 Aligned_cols=376 Identities=15% Similarity=0.214 Sum_probs=263.1
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHH-cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l-~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
+..++|+|+||||||+..-..++..- .....++++.|+|..|...+.++.+.++.-.|..|++-.++.+...
T Consensus 82 ~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~~~s------- 154 (1283)
T TIGR01967 82 NQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHDQVS------- 154 (1283)
T ss_pred CceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCcccC-------
Confidence 35789999999999997533333321 1124788899999999999999999887766778888777655432
Q ss_pred hhcCCcceeeccHHHhhc----ccccCCccEEEEcCccc-c-----chhhHHHHhhhcCCceEEEeecCCChhhHHHHHh
Q 003260 382 IKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQR-F-----GVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451 (835)
Q Consensus 382 l~~G~~dIIVgT~~~L~~----~l~~~~l~llVIDEaHr-~-----g~~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~ 451 (835)
.+..|+|+|++.|.. +..+.++++|||||+|+ . .......+...+++.++|+||||+....+ ..
T Consensus 155 ---~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATld~~~f---a~ 228 (1283)
T TIGR01967 155 ---SNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATIDPERF---SR 228 (1283)
T ss_pred ---CCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCcCHHHH---HH
Confidence 347899999998864 33578999999999995 2 11112333444578899999999976433 33
Q ss_pred cCCCcceecCCCCCccceeEEecccCH----------HHHHHHHHHHHh-cCCeEEEEecCccChHHHHHHHHhhC-CCC
Q 003260 452 GFRDASLISTPPPERLPIKTHLSAFSK----------EKVISAIKYELD-RGGQVFYVLPRIKGLEEPMDFLQQAF-PGV 519 (835)
Q Consensus 452 g~~d~s~I~~~p~~r~~v~~~~~~~~~----------~~l~~~i~~~l~-~ggqvlVf~n~v~~~e~l~~~L~~~~-p~~ 519 (835)
.+.+.+++..+ ...+|+..++..... +.+...+...+. ..|++|||+|+..+++.+++.|.+.. +++
T Consensus 229 ~F~~apvI~V~-Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~ 307 (1283)
T TIGR01967 229 HFNNAPIIEVS-GRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHT 307 (1283)
T ss_pred HhcCCCEEEEC-CCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCc
Confidence 34445555543 445677665543211 122333333332 45899999999999999999998763 457
Q ss_pred eEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCC-----------------CChhHHHHH
Q 003260 520 DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ-----------------FGLAQLYQL 582 (835)
Q Consensus 520 ~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~-----------------~sl~~l~Qr 582 (835)
.+.++||+|+.++|+++++.+ +..+|||||+++++|||||++++||+++.++ .|.+++.||
T Consensus 308 ~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QR 385 (1283)
T TIGR01967 308 EILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQR 385 (1283)
T ss_pred EEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHH
Confidence 799999999999999998765 3479999999999999999999999988542 245789999
Q ss_pred hcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHHHHHHHH
Q 003260 583 RGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML 662 (835)
Q Consensus 583 ~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dl~irg~g~~lg~~q~g~~~~vg~~~y~~~l 662 (835)
+||+||.+ .|.||.+|+++++.. ......++|.+.+. +++.+.++-+ |.+++........+....+.--.+.|
T Consensus 386 aGRAGR~~-~G~cyRLyte~~~~~-~~~~~~PEIlR~~L--~~viL~l~~l---g~~di~~f~fldpP~~~~i~~A~~~L 458 (1283)
T TIGR01967 386 KGRCGRVA-PGICIRLYSEEDFNS-RPEFTDPEILRTNL--ASVILQMLAL---RLGDIAAFPFIEAPDPRAIRDGFRLL 458 (1283)
T ss_pred hhhhCCCC-CceEEEecCHHHHHh-hhhccCcccccccH--HHHHHHHHhc---CCCCcccccCCCCCCHHHHHHHHHHH
Confidence 99999997 899999999775432 22223445555443 4555555544 55666555544444433333333334
Q ss_pred HHHHhcccccc--cccccCcceEEeeecCCCCccccccccCC
Q 003260 663 FESLSKVDEHC--VISVPYKSVQIDININPRLPSEYINHLEN 702 (835)
Q Consensus 663 ~~ai~~~~~~~--~~~~~~g~~~~~l~idp~~~~~~i~~~~~ 702 (835)
. .+.+++.+. ...|++|..++.+|+||.+++.++.+...
T Consensus 459 ~-~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~ 499 (1283)
T TIGR01967 459 E-ELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRL 499 (1283)
T ss_pred H-HCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhc
Confidence 3 344444332 24689999999999999999999877543
No 67
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-33 Score=302.08 Aligned_cols=322 Identities=23% Similarity=0.278 Sum_probs=261.7
Q ss_pred hHHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC---CCEEEEEcccHHHHH
Q 003260 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLAK 345 (835)
Q Consensus 269 ~l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~---g~qvlVLvPtr~LA~ 345 (835)
++.+.+...++-.|+.+|++||..+.+ +.|+.+.+++|+|||.+|..+++..+.- ..+|++++|+++||.
T Consensus 36 ~LLrgiy~yGFekPSaIQqraI~p~i~-------G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~ 108 (397)
T KOG0327|consen 36 SLLRGIYAYGFEKPSAIQQRAILPCIK-------GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQ 108 (397)
T ss_pred HHHhHHHhhccCCchHHHhcccccccc-------CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHH
Confidence 377788777777999999999988865 5799999999999999999999887643 469999999999999
Q ss_pred HHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc-----ccCCccEEEEcCcccc---
Q 003260 346 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-----VYNNLGLLVVDEEQRF--- 417 (835)
Q Consensus 346 Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l-----~~~~l~llVIDEaHr~--- 417 (835)
|....+.. ++.+.+.+|..+.|+.........+ ..-.++|++|||+++.+.+ ..+.+.+.|+||++++
T Consensus 109 qi~~v~~~-lg~~~~~~v~~~igg~~~~~~~~~i---~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~ 184 (397)
T KOG0327|consen 109 QIQKVVRA-LGDHMDVSVHACIGGTNVRREDQAL---LKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSR 184 (397)
T ss_pred HHHHHHHh-hhcccceeeeeecCcccchhhhhhh---hccCceeecCCchhHHHhhccccccccceeEEeecchHhhhcc
Confidence 99977776 6666688999888877654332222 2334789999998887544 4466889999999986
Q ss_pred chh-h-HHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCc--cceeEEecccCHHHHHHHHHHHHhcCC
Q 003260 418 GVK-Q-KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LPIKTHLSAFSKEKVISAIKYELDRGG 493 (835)
Q Consensus 418 g~~-~-~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r--~~v~~~~~~~~~~~l~~~i~~~l~~gg 493 (835)
|+. + ......+++++|++++|||.++..+.....+++++..+...-... .-+..++....++...+.+.....+-.
T Consensus 185 gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~~~~ 264 (397)
T KOG0327|consen 185 GFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYRRVT 264 (397)
T ss_pred chHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHHhhh
Confidence 332 2 344566788999999999999999999999998887776542221 112222222223335555555555678
Q ss_pred eEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCC
Q 003260 494 QVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 573 (835)
Q Consensus 494 qvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~ 573 (835)
|.++|||+.+.+..+...|... +..+..+||.|.+.+|+.++..|+.|..+|||+|+.+++|+|+.++..||+++.|.
T Consensus 265 q~~if~nt~r~v~~l~~~L~~~--~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~ 342 (397)
T KOG0327|consen 265 QAVIFCNTRRKVDNLTDKLRAH--GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPA 342 (397)
T ss_pred cceEEecchhhHHHHHHHHhhC--CceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeecccc
Confidence 9999999999999999999766 88999999999999999999999999999999999999999999999999999997
Q ss_pred CChhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003260 574 FGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 574 ~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
....|.||+||+||.|++|.++.++++++.
T Consensus 343 -~~~~yihR~gr~gr~grkg~~in~v~~~d~ 372 (397)
T KOG0327|consen 343 -RKENYIHRIGRAGRFGRKGVAINFVTEEDV 372 (397)
T ss_pred -chhhhhhhcccccccCCCceeeeeehHhhH
Confidence 899999999999999999999999987654
No 68
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=3e-32 Score=304.15 Aligned_cols=290 Identities=20% Similarity=0.201 Sum_probs=199.1
Q ss_pred cEEEEccCCCcccHHHHHHHHHHHc--CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHH---------
Q 003260 305 DRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKA--------- 373 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~a~l~~l~--~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~--------- 373 (835)
+++|+||||||||++|+.+++..+. .+.+++|++|+++|+.|+++++...|+. .++.+++.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCCch
Confidence 5799999999999999999998764 3579999999999999999999997753 344444432210
Q ss_pred HHHHHHHhhhc-----CCcceeeccHHHhhcccc---------cC--CccEEEEcCccccchhhHHH----Hhhh-cCCc
Q 003260 374 EKEEHLDMIKH-----GHLNIIVGTHSLLGSRVV---------YN--NLGLLVVDEEQRFGVKQKEK----IASF-KISV 432 (835)
Q Consensus 374 e~~~~l~~l~~-----G~~dIIVgT~~~L~~~l~---------~~--~l~llVIDEaHr~g~~~~e~----l~~l-~~~~ 432 (835)
.....+..... -..+|+|+||+.+...+. +. ..++|||||+|.+....... +..+ ..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~ 156 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDV 156 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 00111111111 135799999987754321 11 23789999999985432222 2222 3578
Q ss_pred eEEEeecCCChhhHHHHHhcCCCcceecCCCC-----CccceeEEecc-cCHHHHHHHHHHHHhcCCeEEEEecCccChH
Q 003260 433 DVLTLSATPIPRTLYLALTGFRDASLISTPPP-----ERLPIKTHLSA-FSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506 (835)
Q Consensus 433 ~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~-----~r~~v~~~~~~-~~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e 506 (835)
++++||||++...................+.. .+..+...... ......+..+.+.+..+++++||||+++.++
T Consensus 157 ~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~ 236 (358)
T TIGR01587 157 PILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQ 236 (358)
T ss_pred CEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHH
Confidence 99999999864332222222111111111111 11111111111 1222344445566667899999999999999
Q ss_pred HHHHHHHhhCCCCeEEEEeCCCCHHHHHH----HHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHH
Q 003260 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEE----TMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQL 582 (835)
Q Consensus 507 ~l~~~L~~~~p~~~v~~lhg~m~~~ere~----vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr 582 (835)
.+++.|++..++..+..+||+|++.+|.+ +++.|++|..+|||||+++++|+|++ +++||++..| +++|+||
T Consensus 237 ~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~---~~~~iqr 312 (358)
T TIGR01587 237 EFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP---IDSLIQR 312 (358)
T ss_pred HHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC---HHHHHHH
Confidence 99999999877678999999999999876 48999999999999999999999997 8899887665 6899999
Q ss_pred hcccCCCCCc----eEEEEEecCC
Q 003260 583 RGRVGRADKE----AHAYLFYPDK 602 (835)
Q Consensus 583 ~GRaGR~g~~----G~ay~l~~~~ 602 (835)
+||+||.|+. |.+|++....
T Consensus 313 ~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 313 LGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred hccccCCCCCCCCCCeEEEEeecC
Confidence 9999998743 4788887644
No 69
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-32 Score=327.22 Aligned_cols=376 Identities=20% Similarity=0.269 Sum_probs=291.4
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHH-cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l-~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
..-++|+|+||||||.+.-..++... ..+..+.++.|+|.-|...++++.+.++.-+|-.|++..++.+...
T Consensus 65 ~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s------- 137 (845)
T COG1643 65 NQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVS------- 137 (845)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCC-------
Confidence 35689999999999999766666554 3356899999999999999999999999988999999999876543
Q ss_pred hhcCCcceeeccHHHhhc----ccccCCccEEEEcCcccc------chhh-HHHHhhhcCCceEEEeecCCChhhHHHHH
Q 003260 382 IKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRF------GVKQ-KEKIASFKISVDVLTLSATPIPRTLYLAL 450 (835)
Q Consensus 382 l~~G~~dIIVgT~~~L~~----~l~~~~l~llVIDEaHr~------g~~~-~e~l~~l~~~~~vL~lSATp~p~tl~~~~ 450 (835)
.+..|-+.|.+.|.. +..++.+++|||||+|+= .... +..+...+++.++|.||||.....+ .
T Consensus 138 ---~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~rf---s 211 (845)
T COG1643 138 ---PRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAERF---S 211 (845)
T ss_pred ---CCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHHHH---H
Confidence 457789999988764 445899999999999973 2222 2334555668999999999976654 4
Q ss_pred hcCCCcceecCCCCCccceeEEeccc-CHHH-HHHHHHHHH-----hcCCeEEEEecCccChHHHHHHHHh-hC-CCCeE
Q 003260 451 TGFRDASLISTPPPERLPIKTHLSAF-SKEK-VISAIKYEL-----DRGGQVFYVLPRIKGLEEPMDFLQQ-AF-PGVDI 521 (835)
Q Consensus 451 ~g~~d~s~I~~~p~~r~~v~~~~~~~-~~~~-l~~~i~~~l-----~~ggqvlVf~n~v~~~e~l~~~L~~-~~-p~~~v 521 (835)
.++.+.+++.+ +...+||++++... ..+. +.+++...+ ...|.+|||++..++++.+++.|.+ .+ ++..|
T Consensus 212 ~~f~~apvi~i-~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i 290 (845)
T COG1643 212 AYFGNAPVIEI-EGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEI 290 (845)
T ss_pred HHcCCCCEEEe-cCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEE
Confidence 45556777766 57789999988432 2222 444444333 2358999999999999999999998 44 57899
Q ss_pred EEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCC---C--------------ChhHHHHHhc
Q 003260 522 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ---F--------------GLAQLYQLRG 584 (835)
Q Consensus 522 ~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~---~--------------sl~~l~Qr~G 584 (835)
.++||.|+.+++.++++.-..|..+|++||+|+|++|.||++.+||+.+..+ | |-++..||.|
T Consensus 291 ~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaG 370 (845)
T COG1643 291 LPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAG 370 (845)
T ss_pred eeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhcc
Confidence 9999999999999999999988888999999999999999999999865432 1 4467889999
Q ss_pred ccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCC-CcccccccCCcccchHHHHHHHHH
Q 003260 585 RVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFG-TIFGEQQTGDVGNVGVDLFFEMLF 663 (835)
Q Consensus 585 RaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dl~irg~g-~~lg~~q~g~~~~vg~~~y~~~l~ 663 (835)
|+||.+ +|.||.+|+++++. .......++|.+.+. +|..+.++.+ |.+ ++........+....+..-.++|.
T Consensus 371 RAGR~~-pGicyRLyse~~~~-~~~~~t~PEIlrtdL--s~~vL~l~~~---G~~~d~~~f~fld~P~~~~i~~A~~~L~ 443 (845)
T COG1643 371 RAGRTG-PGICYRLYSEEDFL-AFPEFTLPEILRTDL--SGLVLQLKSL---GIGQDIAPFPFLDPPPEAAIQAALTLLQ 443 (845)
T ss_pred ccccCC-CceEEEecCHHHHH-hcccCCChhhhhcch--HHHHHHHHhc---CCCCCcccCccCCCCChHHHHHHHHHHH
Confidence 999995 89999999987765 566666778877765 6777777765 665 677666666666555544444443
Q ss_pred HHHhcccccccccccCcceEEeeecCCCCccccccccC
Q 003260 664 ESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 701 (835)
Q Consensus 664 ~ai~~~~~~~~~~~~~g~~~~~l~idp~~~~~~i~~~~ 701 (835)
.+.++++.. ..|+.|..|+.+|+||.++.+++.+..
T Consensus 444 -~LGAld~~g-~LT~lG~~ms~lpldprLA~mLl~a~~ 479 (845)
T COG1643 444 -ELGALDDSG-KLTPLGKQMSLLPLDPRLARMLLTAPE 479 (845)
T ss_pred -HcCCcCCCC-CCCHHHHHHHhCCCChHHHHHHHhccc
Confidence 455555443 367899999999999999999998766
No 70
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.7e-32 Score=301.60 Aligned_cols=320 Identities=23% Similarity=0.286 Sum_probs=238.3
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHH-HcCCCEEEEEcccHHHHHHHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLAPTIVLAKQHF 348 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~-l~~g~qvlVLvPtr~LA~Q~~ 348 (835)
+..-++..+.-+++|.|..|++.- +.+ +.|.+|+.+|+||||++.-++-+.. +..|++.++|||..+||+|.|
T Consensus 205 fk~~lk~~G~~eLlPVQ~laVe~G---LLe---G~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy 278 (830)
T COG1202 205 FKRMLKREGIEELLPVQVLAVEAG---LLE---GENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKY 278 (830)
T ss_pred HHHHHHhcCcceecchhhhhhhhc---ccc---CCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchH
Confidence 566667777779999999996653 334 6899999999999999997775544 455899999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHH----HhhcccccCCccEEEEcCccccc-----h
Q 003260 349 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS----LLGSRVVYNNLGLLVVDEEQRFG-----V 419 (835)
Q Consensus 349 ~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~----~L~~~l~~~~l~llVIDEaHr~g-----~ 419 (835)
+.|+++++++ |+++.+-.|-.-...+..-...-..-.+||||||++ +|.....+.++|.|||||+|.+. .
T Consensus 279 ~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~ 357 (830)
T COG1202 279 EDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGP 357 (830)
T ss_pred HHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhccc
Confidence 9999999887 788877777433332222122223346899999986 34444678899999999999863 2
Q ss_pred h---hHHHHhhhcCCceEEEeecCCC-hhhHHHHHhcCCCcceecCCCCCccceeEEecccC-----HHHHHHHHHHHHh
Q 003260 420 K---QKEKIASFKISVDVLTLSATPI-PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFS-----KEKVISAIKYELD 490 (835)
Q Consensus 420 ~---~~e~l~~l~~~~~vL~lSATp~-p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~~~~~-----~~~l~~~i~~~l~ 490 (835)
. ....++.+.++.|+|.+|||.. |..+...+ +..++... ....|+.-++.... .+.+...+.++..
T Consensus 358 RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l----~a~lV~y~-~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~ 432 (830)
T COG1202 358 RLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKL----GAKLVLYD-ERPVPLERHLVFARNESEKWDIIARLVKREFS 432 (830)
T ss_pred chhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHh----CCeeEeec-CCCCChhHeeeeecCchHHHHHHHHHHHHHHh
Confidence 2 2345666678999999999973 44333221 22222221 11223333322211 1223333444442
Q ss_pred c------CCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCcc
Q 003260 491 R------GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564 (835)
Q Consensus 491 ~------ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~ 564 (835)
. .||++||++++..|..++..|... |+++.++|++|+..+|..+...|.++++.++|+|..++.|+|+| ++
T Consensus 433 ~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k--G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFP-AS 509 (830)
T COG1202 433 TESSKGYRGQTIVFTYSRRRCHELADALTGK--GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFP-AS 509 (830)
T ss_pred hhhccCcCCceEEEecchhhHHHHHHHhhcC--CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCc-hH
Confidence 2 389999999999999999999998 99999999999999999999999999999999999999999999 78
Q ss_pred EEEEe----cCCCCChhHHHHHhcccCCCC--CceEEEEEecCCCc
Q 003260 565 TIIVQ----DVQQFGLAQLYQLRGRVGRAD--KEAHAYLFYPDKSL 604 (835)
Q Consensus 565 ~VIi~----d~p~~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~~~ 604 (835)
.||.. +..-.++.+|.|+.|||||.+ ..|.+|+++.+..-
T Consensus 510 QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~ 555 (830)
T COG1202 510 QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKK 555 (830)
T ss_pred HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChh
Confidence 88753 333347889999999999998 67999999987643
No 71
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.8e-31 Score=332.30 Aligned_cols=300 Identities=22% Similarity=0.263 Sum_probs=216.2
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~ 349 (835)
+.+-|.+.++++|||+|..+++.++. ++|++++||||||||..++.++......+.+++||+||++|+.|+++
T Consensus 69 ~~~~f~~~~G~~pt~iQ~~~i~~il~-------g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~ 141 (1176)
T PRK09401 69 FEKFFKKKTGSKPWSLQRTWAKRLLL-------GESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVE 141 (1176)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHC-------CCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHH
Confidence 34567777888999999999999874 57999999999999976555554444568999999999999999999
Q ss_pred HHHHhhcCCCCcEEEEecCCCC--HHHHHHHHHhhhcCCcceeeccHHHhhcc---cccCCccEEEEcCccccc------
Q 003260 350 VVSERFSKYPDIKVGLLSRFQS--KAEKEEHLDMIKHGHLNIIVGTHSLLGSR---VVYNNLGLLVVDEEQRFG------ 418 (835)
Q Consensus 350 ~~~~~f~~~~gi~V~~l~g~~s--~~e~~~~l~~l~~G~~dIIVgT~~~L~~~---l~~~~l~llVIDEaHr~g------ 418 (835)
.++.. +...++.+..+.++.+ ..++.+....+.+|.++|+|+||+.|.+. +...++++|||||||++.
T Consensus 142 ~l~~l-~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 142 KLEKF-GEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHHHH-hhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccch
Confidence 99984 4444677777766543 45666677788888899999999998764 334569999999999853
Q ss_pred --------hh--hHHH-Hhhhc------------------------CCceEEEeecCCChhhHHHHHhcCCCcceecCC-
Q 003260 419 --------VK--QKEK-IASFK------------------------ISVDVLTLSATPIPRTLYLALTGFRDASLISTP- 462 (835)
Q Consensus 419 --------~~--~~e~-l~~l~------------------------~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~- 462 (835)
+. ..+. +..++ ...+++++|||.+|+...... +++.-.+...
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l--~~~ll~~~v~~ 298 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKL--FRELLGFEVGS 298 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHH--hhccceEEecC
Confidence 31 1111 11111 167899999999887543211 1111111111
Q ss_pred -CCCccce-eEEecccCHHHHHHHHHHHHhcCCeEEEEecCccC---hHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHH
Q 003260 463 -PPERLPI-KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG---LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETM 537 (835)
Q Consensus 463 -p~~r~~v-~~~~~~~~~~~l~~~i~~~l~~ggqvlVf~n~v~~---~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl 537 (835)
......+ +.++...+....+..+...+ +.+++||||+... ++.+++.|... |+++..+||+| ++.+
T Consensus 299 ~~~~~rnI~~~yi~~~~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~--gi~v~~~hg~l-----~~~l 369 (1176)
T PRK09401 299 PVFYLRNIVDSYIVDEDSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDL--GINAELAISGF-----ERKF 369 (1176)
T ss_pred cccccCCceEEEEEcccHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHC--CCcEEEEeCcH-----HHHH
Confidence 1111122 22322212222222222222 4689999999888 99999999998 89999999999 2346
Q ss_pred HHhhcCCeeEEEE----cCcCCcCCCCCC-ccEEEEecCCCC--Ch---hHHHHHhcccCC
Q 003260 538 EKFAQGAIKILIC----TNIVESGLDIQN-ANTIIVQDVQQF--GL---AQLYQLRGRVGR 588 (835)
Q Consensus 538 ~~F~~g~~~ILVa----T~iie~GIDIp~-v~~VIi~d~p~~--sl---~~l~Qr~GRaGR 588 (835)
++|++|+++|||| |++++||||+|+ +++||+++.|.| ++ ..+.||.||+-.
T Consensus 370 ~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 370 EKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred HHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 9999999999999 689999999999 899999999974 22 458899999863
No 72
>PRK14701 reverse gyrase; Provisional
Probab=99.98 E-value=4.9e-31 Score=334.68 Aligned_cols=311 Identities=21% Similarity=0.232 Sum_probs=228.6
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~ 349 (835)
+.+-|++.++|+|||+|.++++.+++ ++|++++||||+|||++++.+++....+|.+++||+||++|+.|+++
T Consensus 68 ~~~~f~~~~G~~pt~iQ~~~i~~il~-------G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~ 140 (1638)
T PRK14701 68 FEEFFEKITGFEFWSIQKTWAKRILR-------GKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVE 140 (1638)
T ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHc-------CCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHH
Confidence 34556666788999999999999985 57999999999999997666666555578899999999999999999
Q ss_pred HHHHhhcCC-CCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc---ccCCccEEEEcCcccc--------
Q 003260 350 VVSERFSKY-PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV---VYNNLGLLVVDEEQRF-------- 417 (835)
Q Consensus 350 ~~~~~f~~~-~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l---~~~~l~llVIDEaHr~-------- 417 (835)
.++...... .++++..++|+.+..++...++.+.+|.++|+|+||+.|.+.+ ...+++++||||||++
T Consensus 141 ~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid 220 (1638)
T PRK14701 141 KIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNID 220 (1638)
T ss_pred HHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccc
Confidence 999844332 2577888999999888888888899999999999999887532 2257899999999986
Q ss_pred ------chhh--HH----HHh----------------------hhcCCce-EEEeecCCChhhHHHHHhcCCCcceecCC
Q 003260 418 ------GVKQ--KE----KIA----------------------SFKISVD-VLTLSATPIPRTLYLALTGFRDASLISTP 462 (835)
Q Consensus 418 ------g~~~--~e----~l~----------------------~l~~~~~-vL~lSATp~p~tl~~~~~g~~d~s~I~~~ 462 (835)
|+.. .+ .+. .++...+ ++++|||..++.....+ ++++-.+...
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l--~~~~l~f~v~ 298 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKL--YRELLGFEVG 298 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHH--hhcCeEEEec
Confidence 3311 11 110 1123344 67799999875332211 1333233322
Q ss_pred CC---CccceeEEecccCHHHHHHHHHHHHh-cCCeEEEEecCccCh---HHHHHHHHhhCCCCeEEEEeCCCCHHHHHH
Q 003260 463 PP---ERLPIKTHLSAFSKEKVISAIKYELD-RGGQVFYVLPRIKGL---EEPMDFLQQAFPGVDIAIAHGQQYSRQLEE 535 (835)
Q Consensus 463 p~---~r~~v~~~~~~~~~~~l~~~i~~~l~-~ggqvlVf~n~v~~~---e~l~~~L~~~~p~~~v~~lhg~m~~~ere~ 535 (835)
.. .+..++.++.. ..... ..+.+.+. .+.+.+|||++.+.+ +.+++.|.+. |+++..+||+ |..
T Consensus 299 ~~~~~lr~i~~~yi~~-~~~~k-~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~--Gi~a~~~h~~-----R~~ 369 (1638)
T PRK14701 299 SGRSALRNIVDVYLNP-EKIIK-EHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLED--GFKIELVSAK-----NKK 369 (1638)
T ss_pred CCCCCCCCcEEEEEEC-CHHHH-HHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHC--CCeEEEecch-----HHH
Confidence 11 12223333322 22211 22322222 256899999998765 8999999998 9999999995 889
Q ss_pred HHHHhhcCCeeEEEEc----CcCCcCCCCCC-ccEEEEecCCC--CChhHHHHHh-------------cccCCCCCceEE
Q 003260 536 TMEKFAQGAIKILICT----NIVESGLDIQN-ANTIIVQDVQQ--FGLAQLYQLR-------------GRVGRADKEAHA 595 (835)
Q Consensus 536 vl~~F~~g~~~ILVaT----~iie~GIDIp~-v~~VIi~d~p~--~sl~~l~Qr~-------------GRaGR~g~~G~a 595 (835)
++++|++|+++||||| ++++||||+|+ |++||++|.|. |++..|+|-. ||+||.|..+.+
T Consensus 370 ~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~ 449 (1638)
T PRK14701 370 GFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEG 449 (1638)
T ss_pred HHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchh
Confidence 9999999999999999 58999999999 99999999997 4666555554 999999988887
Q ss_pred EEE
Q 003260 596 YLF 598 (835)
Q Consensus 596 y~l 598 (835)
++.
T Consensus 450 ~~~ 452 (1638)
T PRK14701 450 VLD 452 (1638)
T ss_pred HHH
Confidence 743
No 73
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.98 E-value=9.9e-31 Score=308.61 Aligned_cols=316 Identities=17% Similarity=0.173 Sum_probs=220.8
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003260 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 279 ~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~ 358 (835)
.+.++|+|.+|+..+.. ..+.+..+|++|||+|||++++.++... ++++|||||+.+|+.||.++|.+ |...
T Consensus 253 ~~~LRpYQ~eAl~~~~~----~gr~r~GIIvLPtGaGKTlvai~aa~~l---~k~tLILvps~~Lv~QW~~ef~~-~~~l 324 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFG----NGRARSGIIVLPCGAGKSLVGVTAACTV---KKSCLVLCTSAVSVEQWKQQFKM-WSTI 324 (732)
T ss_pred CCCcCHHHHHHHHHHHh----cCCCCCcEEEeCCCCChHHHHHHHHHHh---CCCEEEEeCcHHHHHHHHHHHHH-hcCC
Confidence 47899999999988763 1223467999999999999998776543 56799999999999999999997 4444
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-------------cccCCccEEEEcCccccchhhHHHH
Q 003260 359 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-------------VVYNNLGLLVVDEEQRFGVKQKEKI 425 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-------------l~~~~l~llVIDEaHr~g~~~~e~l 425 (835)
+...+..++|..... ..+..+|+|+|++.+... +.-..+++||+||||+........+
T Consensus 325 ~~~~I~~~tg~~k~~---------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr~i 395 (732)
T TIGR00603 325 DDSQICRFTSDAKER---------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFRRV 395 (732)
T ss_pred CCceEEEEecCcccc---------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHHHH
Confidence 446777777642211 113468999999987531 1124789999999999987665544
Q ss_pred hhhcCCceEEEeecCCChhhHHH-HHhcCCCcceecCCC-----CC-ccceeE--EecccCH------------------
Q 003260 426 ASFKISVDVLTLSATPIPRTLYL-ALTGFRDASLISTPP-----PE-RLPIKT--HLSAFSK------------------ 478 (835)
Q Consensus 426 ~~l~~~~~vL~lSATp~p~tl~~-~~~g~~d~s~I~~~p-----~~-r~~v~~--~~~~~~~------------------ 478 (835)
...-.....|+|||||....-.. .+..+..+.+...+. .. -.++.. .......
T Consensus 396 l~~l~a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~ 475 (732)
T TIGR00603 396 LTIVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLY 475 (732)
T ss_pred HHhcCcCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHh
Confidence 43334556899999995322110 111111121111100 00 001110 0111110
Q ss_pred ---HHHHHHH---HHHH-hcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcC-CeeEEEE
Q 003260 479 ---EKVISAI---KYEL-DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIKILIC 550 (835)
Q Consensus 479 ---~~l~~~i---~~~l-~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g-~~~ILVa 550 (835)
...+.++ .+.. .++.++||||+.+..++.++..|. +.++||+++..+|+++++.|++| .+++||+
T Consensus 476 ~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 476 VMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-------KPFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred hhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-------CceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 1112222 2222 367899999999888877777662 35689999999999999999875 7899999
Q ss_pred cCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceE-------EEEEecCCCcCCHHHHHHHHHHHH
Q 003260 551 TNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAH-------AYLFYPDKSLLSDQALERLAALEE 618 (835)
Q Consensus 551 T~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~-------ay~l~~~~~~~~~~a~~rl~~i~~ 618 (835)
|+++.+|||+|++++||+++.+.-+..+|.||+||++|.+..|. .|.|++.++.....+.+|-.-+.+
T Consensus 549 SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~ 623 (732)
T TIGR00603 549 SKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVD 623 (732)
T ss_pred ecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999873378999999999999976544 489999998877788888666654
No 74
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.98 E-value=1.9e-30 Score=303.19 Aligned_cols=310 Identities=18% Similarity=0.141 Sum_probs=224.4
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHH
Q 003260 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 272 ~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~ 351 (835)
+......+..|+|+|..+++.++. ++ |..+.||+|||++|.+|++.....|++|+|++||++||.|.++.+
T Consensus 94 Ea~~R~lg~~p~~VQ~~~~~~ll~-------G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~ 164 (656)
T PRK12898 94 EASGRVLGQRHFDVQLMGGLALLS-------GR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELM 164 (656)
T ss_pred HHHHHHhCCCCChHHHHHHHHHhC-------CC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHH
Confidence 344556788999999999999874 23 999999999999999999988888999999999999999999999
Q ss_pred HHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHh-----hcccc------------------------
Q 003260 352 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRVV------------------------ 402 (835)
Q Consensus 352 ~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L-----~~~l~------------------------ 402 (835)
...+. +.|++|+++.++.+..++... .+ +||+|||..-| .+.+.
T Consensus 165 ~~l~~-~lGlsv~~i~gg~~~~~r~~~-----y~-~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (656)
T PRK12898 165 RPLYE-ALGLTVGCVVEDQSPDERRAA-----YG-ADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQ 237 (656)
T ss_pred HHHHh-hcCCEEEEEeCCCCHHHHHHH-----cC-CCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhh
Confidence 98555 448999999998776543332 23 89999998644 22222
Q ss_pred --cCCccEEEEcCcccc------------ch---h---------------------------------------hHHH--
Q 003260 403 --YNNLGLLVVDEEQRF------------GV---K---------------------------------------QKEK-- 424 (835)
Q Consensus 403 --~~~l~llVIDEaHr~------------g~---~---------------------------------------~~e~-- 424 (835)
.+.+.+.||||+|.+ |. . ..+.
T Consensus 238 ~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~ 317 (656)
T PRK12898 238 LLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELA 317 (656)
T ss_pred hcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHh
Confidence 245788999999931 00 0 0000
Q ss_pred --------------------Hhhh--------------------------------------------------------
Q 003260 425 --------------------IASF-------------------------------------------------------- 428 (835)
Q Consensus 425 --------------------l~~l-------------------------------------------------------- 428 (835)
+...
T Consensus 318 ~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a 397 (656)
T PRK12898 318 ESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLA 397 (656)
T ss_pred CcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeee
Confidence 0000
Q ss_pred --------cCCceEEEeecCCChhhHHHHHhcCCCcceecCCC-CCccceeEEecccCHHHHHHHHHHHH----hcCCeE
Q 003260 429 --------KISVDVLTLSATPIPRTLYLALTGFRDASLISTPP-PERLPIKTHLSAFSKEKVISAIKYEL----DRGGQV 495 (835)
Q Consensus 429 --------~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p-~~r~~v~~~~~~~~~~~l~~~i~~~l----~~ggqv 495 (835)
+...++-+||||.......+...+..++..|.+.. ..+.....++.. +......++...+ ..+.++
T Consensus 398 ~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~-t~~~K~~aL~~~i~~~~~~~~pv 476 (656)
T PRK12898 398 RITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFL-TAAAKWAAVAARVRELHAQGRPV 476 (656)
T ss_pred eehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEe-CHHHHHHHHHHHHHHHHhcCCCE
Confidence 00134556888876555444444444544444322 222222222222 2222333444433 346789
Q ss_pred EEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCC---Ccc-----EEE
Q 003260 496 FYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ---NAN-----TII 567 (835)
Q Consensus 496 lVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp---~v~-----~VI 567 (835)
||||++++.++.+++.|... ++.+.++||++. +++..+..|..+...|+|||+++++|+||+ +|. +||
T Consensus 477 LIft~t~~~se~L~~~L~~~--gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI 552 (656)
T PRK12898 477 LVGTRSVAASERLSALLREA--GLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVI 552 (656)
T ss_pred EEEeCcHHHHHHHHHHHHHC--CCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEE
Confidence 99999999999999999998 899999999865 455555666666678999999999999999 666 999
Q ss_pred EecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 568 i~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+++.|. +...|.||+||+||.|.+|.|++|++.++
T Consensus 553 ~~d~P~-s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 553 LTERHD-SARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred EcCCCC-CHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 999998 89999999999999999999999998654
No 75
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.1e-31 Score=298.24 Aligned_cols=375 Identities=16% Similarity=0.195 Sum_probs=288.5
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHH-HcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~-l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
+.-++|+|.||||||.+....++.. ..+++.+-+..|+|+.|..++.++.+.++...|-.|++..+|.+...
T Consensus 371 n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~------- 443 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTS------- 443 (1042)
T ss_pred CcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCC-------
Confidence 4568899999999999854444432 23346788999999999999999999998888999999999876543
Q ss_pred hhcCCcceeeccHHHhhc----ccccCCccEEEEcCcccc------chhhHHHHhhhcCCceEEEeecCCChhhHHHHHh
Q 003260 382 IKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRF------GVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451 (835)
Q Consensus 382 l~~G~~dIIVgT~~~L~~----~l~~~~l~llVIDEaHr~------g~~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~ 451 (835)
....|-+.|.+.|.. +-.+..+++||+||||+- .+.....+..-+.+.++|.+|||+....+ ..
T Consensus 444 ---~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~kf---~n 517 (1042)
T KOG0924|consen 444 ---EDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQKF---SN 517 (1042)
T ss_pred ---CceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHHH---HH
Confidence 335677888877654 335778999999999973 22223444445678999999999965543 34
Q ss_pred cCCCcceecCCCCCccceeEEecccCHHHHHHHHHHHH------hcCCeEEEEecCccChHHHHHHHHhhC------C--
Q 003260 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYEL------DRGGQVFYVLPRIKGLEEPMDFLQQAF------P-- 517 (835)
Q Consensus 452 g~~d~s~I~~~p~~r~~v~~~~~~~~~~~l~~~i~~~l------~~ggqvlVf~n~v~~~e~l~~~L~~~~------p-- 517 (835)
++.+.+.+.+ |...+||.+.+.....++.+++..... ...|.++||.+..+.++..+..++..+ |
T Consensus 518 fFgn~p~f~I-pGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~ 596 (1042)
T KOG0924|consen 518 FFGNCPQFTI-PGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTT 596 (1042)
T ss_pred HhCCCceeee-cCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCC
Confidence 4445555544 677899999888777777776655433 234899999999999888887776653 4
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCC-----------------CChhHHH
Q 003260 518 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ-----------------FGLAQLY 580 (835)
Q Consensus 518 ~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~-----------------~sl~~l~ 580 (835)
++.|.+++++|+.+.+.++++.-..|..+++|||+|+++.+.||++.+||+.+... .|-++..
T Consensus 597 ~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~ 676 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANAD 676 (1042)
T ss_pred ceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccch
Confidence 67899999999999999999999999999999999999999999999999865421 1345678
Q ss_pred HHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccc--hHHHH
Q 003260 581 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNV--GVDLF 658 (835)
Q Consensus 581 Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dl~irg~g~~lg~~q~g~~~~v--g~~~y 658 (835)
||.|||||.| +|.||.+|+.+.+..+......+.|++++. +...|.++.+ |..+++++...+.+..- --.+|
T Consensus 677 QRaGRAGRt~-pG~cYRlYTe~ay~~eml~stvPEIqRTNl--~nvVLlLksl---gV~dll~FdFmD~Pped~~~~sly 750 (1042)
T KOG0924|consen 677 QRAGRAGRTG-PGTCYRLYTEDAYKNEMLPSTVPEIQRTNL--SNVVLLLKSL---GVDDLLKFDFMDPPPEDNLLNSLY 750 (1042)
T ss_pred hhccccCCCC-CcceeeehhhhHHHhhcccCCCchhhhcch--hhHHHHHHhc---ChhhhhCCCcCCCCHHHHHHHHHH
Confidence 9999999996 899999999988888888888899999876 6777777776 55788888877766432 33344
Q ss_pred HHHHHHHHhcccccccccccCcceEEeeecCCCCccccccccC
Q 003260 659 FEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 701 (835)
Q Consensus 659 ~~~l~~ai~~~~~~~~~~~~~g~~~~~l~idp~~~~~~i~~~~ 701 (835)
.-+...|| +. ....|++|..|+++|+||-+++.+|-+..
T Consensus 751 ~Lw~LGAl---~~-~g~LT~lG~~MvefpLDP~lsKmll~a~~ 789 (1042)
T KOG0924|consen 751 QLWTLGAL---DN-TGQLTPLGRKMVEFPLDPPLSKMLLMAAR 789 (1042)
T ss_pred HHHHhhcc---cc-CCccchhhHHhhhCCCCchHHHHHHHHhc
Confidence 44444444 33 23468999999999999999998876543
No 76
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4e-30 Score=279.95 Aligned_cols=370 Identities=17% Similarity=0.238 Sum_probs=283.4
Q ss_pred CCcEEEEccCCCcccHHHHHHHH-HHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003260 303 PMDRLICGDVGFGKTEVALRAIF-CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l-~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
++-++++|+||||||.+.-..+. ..+.....|++..|.|..|.+.+.++.+.+.-..|..|++..++.++...+..++
T Consensus 62 nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lk- 140 (699)
T KOG0925|consen 62 NQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLK- 140 (699)
T ss_pred CceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHHH-
Confidence 46689999999999998543333 3334458899999999999999999999998777899999999988877666665
Q ss_pred hhcCCcceeeccHHHhhc----ccccCCccEEEEcCccccch------hhHHHHhhhcCCceEEEeecCCChhhHHHHHh
Q 003260 382 IKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRFGV------KQKEKIASFKISVDVLTLSATPIPRTLYLALT 451 (835)
Q Consensus 382 l~~G~~dIIVgT~~~L~~----~l~~~~l~llVIDEaHr~g~------~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~ 451 (835)
++|.++|.+ +..+..+++||+||||+-.. .....+...+++.++|.||||.... .+..
T Consensus 141 ---------y~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~---Kfq~ 208 (699)
T KOG0925|consen 141 ---------YCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLKLVVMSATLDAE---KFQR 208 (699)
T ss_pred ---------HhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCceEEEeecccchH---HHHH
Confidence 455556653 33568999999999997321 1122333345799999999998444 4567
Q ss_pred cCCCcceecCCCCCccceeEEecccCHHHHHHHHHHHH------hcCCeEEEEecCccChHHHHHHHHhhC----C---C
Q 003260 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYEL------DRGGQVFYVLPRIKGLEEPMDFLQQAF----P---G 518 (835)
Q Consensus 452 g~~d~s~I~~~p~~r~~v~~~~~~~~~~~l~~~i~~~l------~~ggqvlVf~n~v~~~e~l~~~L~~~~----p---~ 518 (835)
++.+.+++.+|. .+|++.++......+.++++.+.+ ...|.+++|....++++..++.+.... + .
T Consensus 209 yf~n~Pll~vpg--~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~ 286 (699)
T KOG0925|consen 209 YFGNAPLLAVPG--THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGP 286 (699)
T ss_pred HhCCCCeeecCC--CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCC
Confidence 788999998864 788888777665555555444432 346999999999999998888877432 2 3
Q ss_pred CeEEEEeCCCCHHHHHHHHHHhhc---C--CeeEEEEcCcCCcCCCCCCccEEEEecCCC-----------------CCh
Q 003260 519 VDIAIAHGQQYSRQLEETMEKFAQ---G--AIKILICTNIVESGLDIQNANTIIVQDVQQ-----------------FGL 576 (835)
Q Consensus 519 ~~v~~lhg~m~~~ere~vl~~F~~---g--~~~ILVaT~iie~GIDIp~v~~VIi~d~p~-----------------~sl 576 (835)
.+|.++| +.++..+++.... | ..+|+|+|++++..+.++++.+||+-+..+ .|-
T Consensus 287 l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISk 362 (699)
T KOG0925|consen 287 LKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISK 362 (699)
T ss_pred ceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchH
Confidence 5788888 4455666655432 2 478999999999999999999999755321 255
Q ss_pred hHHHHHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHH
Q 003260 577 AQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVD 656 (835)
Q Consensus 577 ~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dl~irg~g~~lg~~q~g~~~~vg~~ 656 (835)
++..||+||+||. ++|.|+.+|+++.+..+......+.|.+.+. +...+.++.+.|.+.+.+ .+++..+.+
T Consensus 363 asA~qR~gragrt-~pGkcfrLYte~~~~~em~~~typeilrsNL--~s~VL~LKklgI~dlvhf------dfmDpPAPE 433 (699)
T KOG0925|consen 363 ASAQQRAGRAGRT-RPGKCFRLYTEEAFEKEMQPQTYPEILRSNL--SSTVLQLKKLGIDDLVHF------DFMDPPAPE 433 (699)
T ss_pred hHHHHHhhhccCC-CCCceEEeecHHhhhhcCCCCCcHHHHHHhh--HHHHHHHHhcCcccccCC------cCCCCCChH
Confidence 7889999999998 6999999999988777777777778877765 677888999888777765 667777888
Q ss_pred HHHHHHHH--HHhcccccccccccCcceEEeeecCCCCccccccccC
Q 003260 657 LFFEMLFE--SLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 701 (835)
Q Consensus 657 ~y~~~l~~--ai~~~~~~~~~~~~~g~~~~~l~idp~~~~~~i~~~~ 701 (835)
.+++.|++ .+.+++++. ..+++|.+|++||+||.+++++|.+.+
T Consensus 434 tLMrALE~LnYLaaLdDdG-nLT~lG~imSEFPLdPqLAkmLi~S~e 479 (699)
T KOG0925|consen 434 TLMRALEVLNYLAALDDDG-NLTSLGEIMSEFPLDPQLAKMLIGSCE 479 (699)
T ss_pred HHHHHHHHhhhhhhhCCCc-ccchhhhhhhcCCCChHHHHHHhhcCC
Confidence 88888876 555666544 357899999999999999999998854
No 77
>PRK13766 Hef nuclease; Provisional
Probab=99.97 E-value=3.6e-29 Score=306.10 Aligned_cols=309 Identities=21% Similarity=0.308 Sum_probs=221.3
Q ss_pred CCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc-CCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003260 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 278 f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~-~g~qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
...+++++|..++..++. .|.|+++|||+|||.+|++++...+. .+.+++||+||++|+.|+.+.+++.++
T Consensus 12 ~~~~~r~yQ~~~~~~~l~--------~n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 12 NTIEARLYQQLLAATALK--------KNTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred CcCCccHHHHHHHHHHhc--------CCeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 446899999999877753 37999999999999999888776653 467999999999999999999988554
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCccccchh-hH----HHHh
Q 003260 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFGVK-QK----EKIA 426 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaHr~g~~-~~----e~l~ 426 (835)
.++.++..++|..+..++...+. +.+|+|+||+.+.. .+.+.++++|||||||+.... .. ....
T Consensus 84 -~~~~~v~~~~g~~~~~~r~~~~~-----~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~ 157 (773)
T PRK13766 84 -IPEEKIVVFTGEVSPEKRAELWE-----KAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYH 157 (773)
T ss_pred -CCCceEEEEeCCCCHHHHHHHHh-----CCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHH
Confidence 33468888998877776655552 37899999987753 446778999999999997322 11 1222
Q ss_pred hhcCCceEEEeecCCChhh--HHHHHhcC--CCcc-------------------eecC----------------------
Q 003260 427 SFKISVDVLTLSATPIPRT--LYLALTGF--RDAS-------------------LIST---------------------- 461 (835)
Q Consensus 427 ~l~~~~~vL~lSATp~p~t--l~~~~~g~--~d~s-------------------~I~~---------------------- 461 (835)
.......+++|||||.... +......+ .... .+..
T Consensus 158 ~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~ 237 (773)
T PRK13766 158 EDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLK 237 (773)
T ss_pred hcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHH
Confidence 2234567999999994221 10000000 0000 0000
Q ss_pred --------CCCCc-cc----------eeEEe-------------------------------------------------
Q 003260 462 --------PPPER-LP----------IKTHL------------------------------------------------- 473 (835)
Q Consensus 462 --------~p~~r-~~----------v~~~~------------------------------------------------- 473 (835)
.+... .. +...+
T Consensus 238 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~ 317 (773)
T PRK13766 238 KLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSS 317 (773)
T ss_pred HHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhcccc
Confidence 00000 00 00000
Q ss_pred -------------------------cc-c-CHHHHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEE
Q 003260 474 -------------------------SA-F-SKEKVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA 524 (835)
Q Consensus 474 -------------------------~~-~-~~~~l~~~i~~~l--~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~l 524 (835)
.. . ..+.+.+.+...+ ..+++++|||++...++.+++.|... ++.+..+
T Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~--~~~~~~~ 395 (773)
T PRK13766 318 GGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE--GIKAVRF 395 (773)
T ss_pred CCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC--CCceEEE
Confidence 00 0 0001112222222 35689999999999999999999776 7788888
Q ss_pred eCC--------CCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEE
Q 003260 525 HGQ--------QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAY 596 (835)
Q Consensus 525 hg~--------m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay 596 (835)
||+ |++.+|..++.+|++|+.+|||||+++++|+|+|++++||+||++. +...|+||+||+||.+ .|.+|
T Consensus 396 ~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~-s~~r~iQR~GR~gR~~-~~~v~ 473 (773)
T PRK13766 396 VGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVP-SEIRSIQRKGRTGRQE-EGRVV 473 (773)
T ss_pred EccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCC-CHHHHHHHhcccCcCC-CCEEE
Confidence 886 9999999999999999999999999999999999999999999985 9999999999999986 48999
Q ss_pred EEecCCCc
Q 003260 597 LFYPDKSL 604 (835)
Q Consensus 597 ~l~~~~~~ 604 (835)
+++..++.
T Consensus 474 ~l~~~~t~ 481 (773)
T PRK13766 474 VLIAKGTR 481 (773)
T ss_pred EEEeCCCh
Confidence 99887654
No 78
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.97 E-value=1.6e-29 Score=296.71 Aligned_cols=309 Identities=17% Similarity=0.188 Sum_probs=225.8
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHH
Q 003260 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 272 ~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~ 351 (835)
++.....+..|++.|..+...+.+ ..|..+.||+|||++|.+|++.....|++|.|++||.+||.|+++.+
T Consensus 47 Ea~~R~lg~~p~~vQlig~~~l~~---------G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~ 117 (745)
T TIGR00963 47 EASKRVLGMRPFDVQLIGGIALHK---------GKIAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWM 117 (745)
T ss_pred HHHHHHhCCCccchHHhhhhhhcC---------CceeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHH
Confidence 344556678899999998776532 24999999999999999998655556889999999999999999999
Q ss_pred HHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHh-h----c-------ccccCCccEEEEcCccccch
Q 003260 352 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-G----S-------RVVYNNLGLLVVDEEQRFGV 419 (835)
Q Consensus 352 ~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L-~----~-------~l~~~~l~llVIDEaHr~g~ 419 (835)
...+.. .|++|+++.++.+..++...+ .++|+||||+.| + + .+.+++++++||||+|+++.
T Consensus 118 ~~l~~~-LGLsv~~i~g~~~~~~r~~~y------~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 118 GQVYRF-LGLSVGLILSGMSPEERREAY------ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred HHHhcc-CCCeEEEEeCCCCHHHHHHhc------CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 985554 489999999988876654443 379999999866 2 2 24678899999999997644
Q ss_pred -hhHHHHhhhc--CC-----------------------------------------------------------------
Q 003260 420 -KQKEKIASFK--IS----------------------------------------------------------------- 431 (835)
Q Consensus 420 -~~~e~l~~l~--~~----------------------------------------------------------------- 431 (835)
.++..+.... ..
T Consensus 191 DeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al 270 (745)
T TIGR00963 191 DEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNAL 270 (745)
T ss_pred HhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHH
Confidence 2221111000 01
Q ss_pred ----------------------------------------------------------------------ceEEEeecCC
Q 003260 432 ----------------------------------------------------------------------VDVLTLSATP 441 (835)
Q Consensus 432 ----------------------------------------------------------------------~~vL~lSATp 441 (835)
.++.+||+|.
T Consensus 271 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa 350 (745)
T TIGR00963 271 KAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTA 350 (745)
T ss_pred HHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCc
Confidence 1122233333
Q ss_pred ChhhHHHHHhcCCCcceecCCCC---CccceeEEecccCH---HHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhh
Q 003260 442 IPRTLYLALTGFRDASLISTPPP---ERLPIKTHLSAFSK---EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 515 (835)
Q Consensus 442 ~p~tl~~~~~g~~d~s~I~~~p~---~r~~v~~~~~~~~~---~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~ 515 (835)
..... .+....+..++.+|+. .|......+..... ..+++.+.+....+.++||||++++.++.+++.|.+.
T Consensus 351 ~te~~--E~~~iY~l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~ 428 (745)
T TIGR00963 351 KTEEE--EFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKER 428 (745)
T ss_pred HHHHH--HHHHHhCCCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc
Confidence 21111 1111222333333322 12221112211111 2344445555677899999999999999999999998
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCC-------ccEEEEecCCCCChhHHHHHhcccCC
Q 003260 516 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN-------ANTIIVQDVQQFGLAQLYQLRGRVGR 588 (835)
Q Consensus 516 ~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~-------v~~VIi~d~p~~sl~~l~Qr~GRaGR 588 (835)
++...++||+ +.+|+..+..|..+...|+|||++++||+||+. ..+||+++.|. +...+.|++||+||
T Consensus 429 --gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~-s~ri~~q~~GRtGR 503 (745)
T TIGR00963 429 --GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHE-SRRIDNQLRGRSGR 503 (745)
T ss_pred --CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCC-cHHHHHHHhccccC
Confidence 8899999998 789999999999999999999999999999998 55999999997 89999999999999
Q ss_pred CCCceEEEEEecCCC
Q 003260 589 ADKEAHAYLFYPDKS 603 (835)
Q Consensus 589 ~g~~G~ay~l~~~~~ 603 (835)
.|.+|.+.+|++.++
T Consensus 504 qG~~G~s~~~ls~eD 518 (745)
T TIGR00963 504 QGDPGSSRFFLSLED 518 (745)
T ss_pred CCCCcceEEEEeccH
Confidence 999999999998664
No 79
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.5e-29 Score=301.28 Aligned_cols=308 Identities=19% Similarity=0.229 Sum_probs=225.7
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHH
Q 003260 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 272 ~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~ 351 (835)
+......+..|++.|..+...+.+ + .|..+.||+|||++|++|++.....|++|+|++||++||.|+++.+
T Consensus 69 ea~~R~~g~~p~~vQl~~~~~l~~-------G--~Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~ 139 (790)
T PRK09200 69 EAAKRVLGMRPYDVQLIGALVLHE-------G--NIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEM 139 (790)
T ss_pred HHHHHHhCCCCchHHHHhHHHHcC-------C--ceeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHH
Confidence 344455677899999999776532 2 3999999999999999999877778999999999999999999999
Q ss_pred HHhhcCCCCcEEEEecCCCC-HHHHHHHHHhhhcCCcceeeccHHHh-----hccc-------ccCCccEEEEcCcccc-
Q 003260 352 SERFSKYPDIKVGLLSRFQS-KAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRV-------VYNNLGLLVVDEEQRF- 417 (835)
Q Consensus 352 ~~~f~~~~gi~V~~l~g~~s-~~e~~~~l~~l~~G~~dIIVgT~~~L-----~~~l-------~~~~l~llVIDEaHr~- 417 (835)
...+.. .|++|+++.++.+ ..++.... .+||++|||+.| .+.+ ..+.+.++||||+|++
T Consensus 140 ~~l~~~-lGl~v~~i~g~~~~~~~r~~~y------~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 140 GQVYEF-LGLTVGLNFSDIDDASEKKAIY------EADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HHHHhh-cCCeEEEEeCCCCcHHHHHHhc------CCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 985554 5899999999887 55544322 389999999877 3322 3478899999999942
Q ss_pred -----------ch----------------------------------------hhHHH----------------------
Q 003260 418 -----------GV----------------------------------------KQKEK---------------------- 424 (835)
Q Consensus 418 -----------g~----------------------------------------~~~e~---------------------- 424 (835)
|. ...+.
T Consensus 213 iDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~A 292 (790)
T PRK09200 213 LDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILA 292 (790)
T ss_pred eccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHH
Confidence 00 00000
Q ss_pred Hhhh----------------------------------------------------------------cCCceEEEeecC
Q 003260 425 IASF----------------------------------------------------------------KISVDVLTLSAT 440 (835)
Q Consensus 425 l~~l----------------------------------------------------------------~~~~~vL~lSAT 440 (835)
+... +...++.+||+|
T Consensus 293 l~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGT 372 (790)
T PRK09200 293 LRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGT 372 (790)
T ss_pred HHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCC
Confidence 0000 001234456666
Q ss_pred CChhhHHHHHhcCCCcceecCCCC---CccceeEEecccCHHHHHHHH----HHHHhcCCeEEEEecCccChHHHHHHHH
Q 003260 441 PIPRTLYLALTGFRDASLISTPPP---ERLPIKTHLSAFSKEKVISAI----KYELDRGGQVFYVLPRIKGLEEPMDFLQ 513 (835)
Q Consensus 441 p~p~tl~~~~~g~~d~s~I~~~p~---~r~~v~~~~~~~~~~~l~~~i----~~~l~~ggqvlVf~n~v~~~e~l~~~L~ 513 (835)
...... .+....+..++.+|+. .|......+.. .......++ ......+.+++|||++++.++.++..|.
T Consensus 373 a~t~~~--e~~~~Y~l~v~~IPt~kp~~r~d~~~~i~~-~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~ 449 (790)
T PRK09200 373 AKTEEK--EFFEVYNMEVVQIPTNRPIIRIDYPDKVFV-TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLD 449 (790)
T ss_pred ChHHHH--HHHHHhCCcEEECCCCCCcccccCCCeEEc-CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHH
Confidence 432222 2233445556666543 22222222222 222233333 3333467899999999999999999999
Q ss_pred hhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCC---CCcc-----EEEEecCCCCChhHHHHHhcc
Q 003260 514 QAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI---QNAN-----TIIVQDVQQFGLAQLYQLRGR 585 (835)
Q Consensus 514 ~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDI---p~v~-----~VIi~d~p~~sl~~l~Qr~GR 585 (835)
+. ++.+.++||++.+.++..+...+..| +|+|||++++||+|| |+|. +||+++.|. +...|.||+||
T Consensus 450 ~~--gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~-s~r~y~qr~GR 524 (790)
T PRK09200 450 EA--GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERME-SRRVDLQLRGR 524 (790)
T ss_pred HC--CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCC-CHHHHHHhhcc
Confidence 98 89999999999988888888877766 799999999999999 6998 999999998 89999999999
Q ss_pred cCCCCCceEEEEEecCCC
Q 003260 586 VGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 586 aGR~g~~G~ay~l~~~~~ 603 (835)
+||.|.+|.|++|++.++
T Consensus 525 tGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 525 SGRQGDPGSSQFFISLED 542 (790)
T ss_pred ccCCCCCeeEEEEEcchH
Confidence 999999999999998654
No 80
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=2.2e-29 Score=281.18 Aligned_cols=284 Identities=21% Similarity=0.252 Sum_probs=191.3
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCC---CCc
Q 003260 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY---PDI 361 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~---~gi 361 (835)
+|.+|++.+.+. ....+++++|||||||++|+++++. .+.++++++|+++|+.|+++++.+.+..+ .+.
T Consensus 1 hQ~~~~~~~~~~-----~~~~~~i~apTGsGKT~~~~~~~l~---~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSK-----DADIIFNTAPTGAGKTLAWLTPLLH---GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcC-----CCCEEEEECCCCCCHHHHHHHHHHH---cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 599999998752 1245889999999999999998874 35578999999999999999999877543 256
Q ss_pred EEEEecCCCCHHHHHHH-----------------HHhhhcCCcceeeccHHHhhccc-------------ccCCccEEEE
Q 003260 362 KVGLLSRFQSKAEKEEH-----------------LDMIKHGHLNIIVGTHSLLGSRV-------------VYNNLGLLVV 411 (835)
Q Consensus 362 ~V~~l~g~~s~~e~~~~-----------------l~~l~~G~~dIIVgT~~~L~~~l-------------~~~~l~llVI 411 (835)
.+..++|.... +.+.. ...+....++|+++||+.|...+ .+.++++||+
T Consensus 73 ~v~~~~g~~~~-d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~ 151 (357)
T TIGR03158 73 NLLHVSKATLK-DIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF 151 (357)
T ss_pred eEEEecCCchH-HHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE
Confidence 67777775222 10000 11122345789999998774211 1478999999
Q ss_pred cCccccchhhH----------HHHhhhcCCceEEEeecCCChhhHHHHHhc--CCCccee-cCC--------------CC
Q 003260 412 DEEQRFGVKQK----------EKIASFKISVDVLTLSATPIPRTLYLALTG--FRDASLI-STP--------------PP 464 (835)
Q Consensus 412 DEaHr~g~~~~----------e~l~~l~~~~~vL~lSATp~p~tl~~~~~g--~~d~s~I-~~~--------------p~ 464 (835)
||+|.++..+. ..+.......++++||||+++......... +...... ... +.
T Consensus 152 DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 231 (357)
T TIGR03158 152 DEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKT 231 (357)
T ss_pred ecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccc
Confidence 99998753221 112222345799999999977654433321 2211111 110 00
Q ss_pred -C-c---cceeEEecc---cCHHH---HHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHH
Q 003260 465 -E-R---LPIKTHLSA---FSKEK---VISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSR 531 (835)
Q Consensus 465 -~-r---~~v~~~~~~---~~~~~---l~~~i~~~l--~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ 531 (835)
+ + .++...+.. +.... +.+.+.+.+ ..+++++||||++..++.+++.|++...++.+..+||.+++.
T Consensus 232 ~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~ 311 (357)
T TIGR03158 232 QSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKK 311 (357)
T ss_pred cccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHH
Confidence 0 0 123322222 11111 223333333 246799999999999999999999864456788999999999
Q ss_pred HHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccC
Q 003260 532 QLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 587 (835)
Q Consensus 532 ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaG 587 (835)
+|+++ ++.+|||||+++++|||+|++ .|| ++ |. +.++|+||+||+|
T Consensus 312 ~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~-~~~~yiqR~GR~g 357 (357)
T TIGR03158 312 DRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-AR-DAAAFWQRLGRLG 357 (357)
T ss_pred HHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CC-CHHHHhhhcccCC
Confidence 88765 378999999999999999976 565 45 54 7899999999997
No 81
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.97 E-value=1.3e-29 Score=316.08 Aligned_cols=286 Identities=23% Similarity=0.280 Sum_probs=206.1
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~ 349 (835)
+.+-|.+...+.|+|+|+.+++.++. ++|++++||||||||..++.++......+++++||+||++||.|+++
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~-------G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLR-------GDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhC-------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHH
Confidence 44556666778999999999999875 57999999999999985544444444568899999999999999999
Q ss_pred HHHHhhcCCCCcE---EEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccc-cC-CccEEEEcCccccc------
Q 003260 350 VVSERFSKYPDIK---VGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV-YN-NLGLLVVDEEQRFG------ 418 (835)
Q Consensus 350 ~~~~~f~~~~gi~---V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~-~~-~l~llVIDEaHr~g------ 418 (835)
.+...+... ++. +++++|+.+..++...+..+.+|.++|+|+||+.|.+.+. +. +++++||||||++.
T Consensus 140 ~l~~l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~~~iVvDEaD~~L~~~k~v 218 (1171)
T TIGR01054 140 KISSLAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKFDFIFVDDVDALLKASKNV 218 (1171)
T ss_pred HHHHHHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCCCEEEEeChHhhhhccccH
Confidence 999854432 444 3467888888888888888888889999999999876432 22 78999999999863
Q ss_pred --------hhh--HHHH-----------------------hhhcCCce--EEEeecCCChhhHHHHHhcCCCcceecCCC
Q 003260 419 --------VKQ--KEKI-----------------------ASFKISVD--VLTLSATPIPRTLYLALTGFRDASLISTPP 463 (835)
Q Consensus 419 --------~~~--~e~l-----------------------~~l~~~~~--vL~lSATp~p~tl~~~~~g~~d~s~I~~~p 463 (835)
+.. .+.+ ...+...+ ++++|||+.|+.....+ +++...+....
T Consensus 219 d~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l--~r~ll~~~v~~ 296 (1171)
T TIGR01054 219 DKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKL--FRELLGFEVGG 296 (1171)
T ss_pred HHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHH--cccccceEecC
Confidence 211 1111 11223333 56789997666543211 22222222211
Q ss_pred CC--cccee-EEecccC-HHHHHHHHHHHHhcCCeEEEEecCc---cChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHH
Q 003260 464 PE--RLPIK-THLSAFS-KEKVISAIKYELDRGGQVFYVLPRI---KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEET 536 (835)
Q Consensus 464 ~~--r~~v~-~~~~~~~-~~~l~~~i~~~l~~ggqvlVf~n~v---~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~v 536 (835)
.. ...+. .++.... ...+.+.+ ..+ +.+++|||++. +.++.+++.|.+. ++++..+||+|+ +.+
T Consensus 297 ~~~~~r~I~~~~~~~~~~~~~L~~ll-~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~--g~~a~~lhg~~~----~~~ 367 (1171)
T TIGR01054 297 GSDTLRNVVDVYVEDEDLKETLLEIV-KKL--GTGGIVYVSIDYGKEKAEEIAEFLENH--GVKAVAYHATKP----KED 367 (1171)
T ss_pred ccccccceEEEEEecccHHHHHHHHH-HHc--CCCEEEEEeccccHHHHHHHHHHHHhC--CceEEEEeCCCC----HHH
Confidence 11 11222 2222222 22233332 222 56899999998 8899999999987 899999999997 368
Q ss_pred HHHhhcCCeeEEEE----cCcCCcCCCCCC-ccEEEEecCCCC
Q 003260 537 MEKFAQGAIKILIC----TNIVESGLDIQN-ANTIIVQDVQQF 574 (835)
Q Consensus 537 l~~F~~g~~~ILVa----T~iie~GIDIp~-v~~VIi~d~p~~ 574 (835)
+++|++|+++|||| |++++||||+|+ +++||++|.|++
T Consensus 368 l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 368 YEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred HHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 99999999999999 589999999999 899999999975
No 82
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=4.9e-29 Score=291.30 Aligned_cols=312 Identities=21% Similarity=0.284 Sum_probs=230.2
Q ss_pred hCCC-CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc----------CCCEEEEEcccHHHHH
Q 003260 277 QFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS----------AGKQAMVLAPTIVLAK 345 (835)
Q Consensus 277 ~f~~-~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~----------~g~qvlVLvPtr~LA~ 345 (835)
.|.| +++.+|..+++.+.+ ...|+|||||||||||.+|+++++..+. ++.+++|++|+++||.
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~------SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~ 178 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYK------SNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAA 178 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhc------CCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHH
Confidence 3455 788999999999874 3568999999999999999999999887 4679999999999999
Q ss_pred HHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhh--------cccccCCccEEEEcCcccc
Q 003260 346 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG--------SRVVYNNLGLLVVDEEQRF 417 (835)
Q Consensus 346 Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~--------~~l~~~~l~llVIDEaHr~ 417 (835)
++++.|.++|+.+ |++|..++|+......+ . -.++|||+||+.+- +...+..++||||||+|.+
T Consensus 179 Em~~~~~kkl~~~-gi~v~ELTGD~ql~~te-i------~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlL 250 (1230)
T KOG0952|consen 179 EMVDKFSKKLAPL-GISVRELTGDTQLTKTE-I------ADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLL 250 (1230)
T ss_pred HHHHHHhhhcccc-cceEEEecCcchhhHHH-H------HhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhh
Confidence 9999999999988 89999999986554332 2 24899999998762 1234678999999999976
Q ss_pred ----chhh-------HHHHhhhcCCceEEEeecCCCh-hhHHHHHhcCCCcceecCCCC-CccceeEEec----c-----
Q 003260 418 ----GVKQ-------KEKIASFKISVDVLTLSATPIP-RTLYLALTGFRDASLISTPPP-ERLPIKTHLS----A----- 475 (835)
Q Consensus 418 ----g~~~-------~e~l~~l~~~~~vL~lSATp~p-~tl~~~~~g~~d~s~I~~~p~-~r~~v~~~~~----~----- 475 (835)
|... ..........+++|++|||.+. ..+..++..-....+...... ...|....+. .
T Consensus 251 hd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~ 330 (1230)
T KOG0952|consen 251 HDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQ 330 (1230)
T ss_pred cCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhh
Confidence 2211 1112233467899999999633 222222221111111111100 0112111111 0
Q ss_pred --cCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC----------CC-----------CeEEEEeCCCCHHH
Q 003260 476 --FSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF----------PG-----------VDIAIAHGQQYSRQ 532 (835)
Q Consensus 476 --~~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~----------p~-----------~~v~~lhg~m~~~e 532 (835)
...+...+.+.+.+.+|.||+|||.++..+...++.|.+.. |+ ..+.++|++|...+
T Consensus 331 ~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~D 410 (1230)
T KOG0952|consen 331 KKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSD 410 (1230)
T ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhh
Confidence 11234567778888999999999999988877777776542 11 35789999999999
Q ss_pred HHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCC----------ChhHHHHHhcccCCCC--CceEEEEEec
Q 003260 533 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF----------GLAQLYQLRGRVGRAD--KEAHAYLFYP 600 (835)
Q Consensus 533 re~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~----------sl~~l~Qr~GRaGR~g--~~G~ay~l~~ 600 (835)
|..+.+-|..|.++||+||..++.|+|+| +.+||+-+.+.| +.-+..|..|||||.. ..|.++++.+
T Consensus 411 R~l~E~~F~~G~i~vL~cTaTLAwGVNLP-A~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt 489 (1230)
T KOG0952|consen 411 RQLVEKEFKEGHIKVLCCTATLAWGVNLP-AYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITT 489 (1230)
T ss_pred HHHHHHHHhcCCceEEEecceeeeccCCc-ceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEec
Confidence 99999999999999999999999999999 889998766544 3456789999999986 6799988887
Q ss_pred CCC
Q 003260 601 DKS 603 (835)
Q Consensus 601 ~~~ 603 (835)
.+.
T Consensus 490 ~dk 492 (1230)
T KOG0952|consen 490 RDK 492 (1230)
T ss_pred ccH
Confidence 664
No 83
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.96 E-value=2.1e-28 Score=296.85 Aligned_cols=324 Identities=19% Similarity=0.165 Sum_probs=245.8
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCC--EEEEEcccHHHHHHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK--QAMVLAPTIVLAKQH 347 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~--qvlVLvPtr~LA~Q~ 347 (835)
+...+.+.++..|.++|.+|+..+.+ ++|+||+.+||||||++|++|++..+..+. ++|+|.||++||+.+
T Consensus 59 l~~~l~~~g~~~lY~HQ~~A~~~~~~-------G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ 131 (851)
T COG1205 59 LKSALVKAGIERLYSHQVDALRLIRE-------GRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQ 131 (851)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHC-------CCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhH
Confidence 46778888888999999999998864 589999999999999999999999886654 669999999999999
Q ss_pred HHHHHHhhcCCC-CcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc---------cccCCccEEEEcCcccc
Q 003260 348 FDVVSERFSKYP-DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR---------VVYNNLGLLVVDEEQRF 417 (835)
Q Consensus 348 ~~~~~~~f~~~~-gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~---------l~~~~l~llVIDEaHr~ 417 (835)
.++|++..+.++ ++.+..++|.....++. .+..+.++|+++||.+|.-. ..++++.+||+||+|-+
T Consensus 132 ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~----~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY 207 (851)
T COG1205 132 AERLRELISDLPGKVTFGRYTGDTPPEERR----AIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY 207 (851)
T ss_pred HHHHHHHHHhCCCcceeeeecCCCChHHHH----HHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec
Confidence 999999877776 68899999988777654 34457899999999988531 23578999999999964
Q ss_pred ----chhhHHHH-------hhhcCCceEEEeecCCChhhHHHHHhcCCCcce-ecCCCCCccceeEEeccc---------
Q 003260 418 ----GVKQKEKI-------ASFKISVDVLTLSATPIPRTLYLALTGFRDASL-ISTPPPERLPIKTHLSAF--------- 476 (835)
Q Consensus 418 ----g~~~~e~l-------~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~-I~~~p~~r~~v~~~~~~~--------- 476 (835)
|....-.+ .....+.++|+.|||............-.+... +......+.+........
T Consensus 208 rGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~ 287 (851)
T COG1205 208 RGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESI 287 (851)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhc
Confidence 44332222 223457899999999854444333333333333 332222222222211111
Q ss_pred --C-HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHH----HHhhCC--CCeEEEEeCCCCHHHHHHHHHHhhcCCeeE
Q 003260 477 --S-KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDF----LQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKI 547 (835)
Q Consensus 477 --~-~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~----L~~~~p--~~~v~~lhg~m~~~ere~vl~~F~~g~~~I 547 (835)
+ .......+...+..+-++++|+.+...++.+... +...-+ ...+..++|+|...+|.++...|++|+..+
T Consensus 288 r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~ 367 (851)
T COG1205 288 RRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLG 367 (851)
T ss_pred ccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccE
Confidence 1 2233444455567788999999999999888633 332211 146889999999999999999999999999
Q ss_pred EEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003260 548 LICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 548 LVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
+++|+.++-||||-.++.||..+.|.-+..++.|+.||+||.++.+..+..+..+..
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~ 424 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPL 424 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCcc
Confidence 999999999999999999999999965789999999999999988888877774433
No 84
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.96 E-value=2.6e-28 Score=288.26 Aligned_cols=289 Identities=19% Similarity=0.236 Sum_probs=204.1
Q ss_pred EEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcC
Q 003260 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385 (835)
Q Consensus 306 ~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G 385 (835)
.+++++||+|||++|++|++.....|+.|+|++|++.||.|+++.+...+ .+.|++|+.+.++....+.....+... .
T Consensus 86 ~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~-~~LGLsv~~~~~~s~~~~~~~~~rr~~-y 163 (762)
T TIGR03714 86 NIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVY-EWLGLTVSLGVVDDPDEEYDANEKRKI-Y 163 (762)
T ss_pred ceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHH-hhcCCcEEEEECCCCccccCHHHHHHh-C
Confidence 69999999999999999988777788899999999999999999998744 445899988776421111111111222 2
Q ss_pred CcceeeccHHHhh-c-----------ccccCCccEEEEcCcccc------------c-----------------------
Q 003260 386 HLNIIVGTHSLLG-S-----------RVVYNNLGLLVVDEEQRF------------G----------------------- 418 (835)
Q Consensus 386 ~~dIIVgT~~~L~-~-----------~l~~~~l~llVIDEaHr~------------g----------------------- 418 (835)
.++|++|||+.|. + ...++++.++||||||.+ |
T Consensus 164 ~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~ 243 (762)
T TIGR03714 164 NSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDV 243 (762)
T ss_pred CCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCC
Confidence 4899999999882 2 123578899999999942 0
Q ss_pred -----------------hhhHHHH----------------------hh---h----------------------------
Q 003260 419 -----------------VKQKEKI----------------------AS---F---------------------------- 428 (835)
Q Consensus 419 -----------------~~~~e~l----------------------~~---l---------------------------- 428 (835)
....+.+ .. +
T Consensus 244 dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~ 323 (762)
T TIGR03714 244 DYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTK 323 (762)
T ss_pred CeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCC
Confidence 0000000 00 0
Q ss_pred ---------------------------------cCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCC---ccceeEE
Q 003260 429 ---------------------------------KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE---RLPIKTH 472 (835)
Q Consensus 429 ---------------------------------~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~---r~~v~~~ 472 (835)
+...++.+||+|.......+ ....+..++.+|+.. |......
T Consensus 324 ~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef--~~iY~l~v~~IPt~kp~~r~d~~d~ 401 (762)
T TIGR03714 324 LQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEF--IETYSLSVVKIPTNKPIIRIDYPDK 401 (762)
T ss_pred cchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHH--HHHhCCCEEEcCCCCCeeeeeCCCe
Confidence 00134556777753322222 234455556655432 2222222
Q ss_pred ecccCH---HHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEE
Q 003260 473 LSAFSK---EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILI 549 (835)
Q Consensus 473 ~~~~~~---~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILV 549 (835)
+..... ..+++.+......+.+++|||++++.++.++..|.+. ++.+.++||++.+.++..+..++..| .|+|
T Consensus 402 i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~--gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlI 477 (762)
T TIGR03714 402 IYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLRE--GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTV 477 (762)
T ss_pred EEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHC--CCCEEEecCCChHHHHHHHHHcCCCC--eEEE
Confidence 222111 2334444444456889999999999999999999998 89999999999998888888777766 7999
Q ss_pred EcCcCCcCCCCC---------CccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003260 550 CTNIVESGLDIQ---------NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 550 aT~iie~GIDIp---------~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
||++++||+||| ++++|++++.|. ... ..||+||+||.|.+|.+++|++.++.
T Consensus 478 ATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps-~ri-d~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 478 ATSMAGRGTDIKLGKGVAELGGLAVIGTERMEN-SRV-DLQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred EccccccccCCCCCccccccCCeEEEEecCCCC-cHH-HHHhhhcccCCCCceeEEEEEccchh
Confidence 999999999999 999999999996 444 49999999999999999999986643
No 85
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=2.6e-28 Score=294.56 Aligned_cols=316 Identities=20% Similarity=0.223 Sum_probs=254.7
Q ss_pred HHHHHHHhCCC-CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHH
Q 003260 270 AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 348 (835)
Q Consensus 270 l~~~~~~~f~~-~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~ 348 (835)
....+...|+. .++|-|.+||..++. +.|++|.+|||+||+++|.+|++.. ++-++|+.|..+|.+.+.
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~-------Gkd~fvlmpTG~GKSLCYQlPA~l~---~gitvVISPL~SLm~DQv 321 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLS-------GKDCFVLMPTGGGKSLCYQLPALLL---GGVTVVISPLISLMQDQV 321 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHc-------CCceEEEeecCCceeeEeecccccc---CCceEEeccHHHHHHHHH
Confidence 45566667776 889999999987653 6899999999999999999998654 568999999999999987
Q ss_pred HHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcC--CcceeeccHHHhhcc-------cccCC---ccEEEEcCccc
Q 003260 349 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG--HLNIIVGTHSLLGSR-------VVYNN---LGLLVVDEEQR 416 (835)
Q Consensus 349 ~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G--~~dIIVgT~~~L~~~-------l~~~~---l~llVIDEaHr 416 (835)
..+... ++....+++..+..++...+..+.+| .++|++.||+.+... ..+.. +.++||||||.
T Consensus 322 ~~L~~~-----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHC 396 (941)
T KOG0351|consen 322 THLSKK-----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHC 396 (941)
T ss_pred Hhhhhc-----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHH
Confidence 777432 78999999999999999999999999 899999999987542 12333 78899999996
Q ss_pred c---------chhhHHHHhhhcCCceEEEeecCCChhhHHHH--HhcCCCcceecCCCCCccceeEEecccCHHHHHHHH
Q 003260 417 F---------GVKQKEKIASFKISVDVLTLSATPIPRTLYLA--LTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAI 485 (835)
Q Consensus 417 ~---------g~~~~e~l~~l~~~~~vL~lSATp~p~tl~~~--~~g~~d~s~I~~~p~~r~~v~~~~~~~~~~~l~~~i 485 (835)
. .+.....++...+++.++++|||..+++.... ..+++++.++.. ..+|......+...........+
T Consensus 397 VSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~-sfnR~NL~yeV~~k~~~~~~~~~ 475 (941)
T KOG0351|consen 397 VSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS-SFNRPNLKYEVSPKTDKDALLDI 475 (941)
T ss_pred hhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc-cCCCCCceEEEEeccCccchHHH
Confidence 3 33444555555677899999999987776544 345566655443 23344444444333312222222
Q ss_pred HHHH---hcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCC
Q 003260 486 KYEL---DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562 (835)
Q Consensus 486 ~~~l---~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~ 562 (835)
.... ..+...||+|.++.+|+.++..|+.. +.+...+|++|++.+|+.|..+|..++++|+|||=++++|||.|+
T Consensus 476 ~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~--~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~D 553 (941)
T KOG0351|consen 476 LEESKLRHPDQSGIIYCLSRKECEQVSAVLRSL--GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPD 553 (941)
T ss_pred HHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHh--chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCc
Confidence 2222 34578999999999999999999999 789999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003260 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 563 v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
|+.||++..|. +++.|||-+|||||.|....|.+||...+.
T Consensus 554 VR~ViH~~lPk-s~E~YYQE~GRAGRDG~~s~C~l~y~~~D~ 594 (941)
T KOG0351|consen 554 VRFVIHYSLPK-SFEGYYQEAGRAGRDGLPSSCVLLYGYADI 594 (941)
T ss_pred eeEEEECCCch-hHHHHHHhccccCcCCCcceeEEecchhHH
Confidence 99999999999 999999999999999999999999987643
No 86
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=3.5e-27 Score=248.92 Aligned_cols=315 Identities=24% Similarity=0.372 Sum_probs=234.7
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCC
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP 359 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~ 359 (835)
-++||.|+.|-..+...+.+ ..+.||.|.||+|||+.....+..++.+|..|.+..|+...+.+.+.++++-|.
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~---k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~--- 169 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQ---KEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFS--- 169 (441)
T ss_pred cccChhHHHHHHHHHHHHHh---cCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhc---
Confidence 38999999999999987743 578999999999999998888888899999999999999999999999998764
Q ss_pred CcEEEEecCCCCHHHHHHHHHhhhcCCcceeec-cHHHhhcccccCCccEEEEcCccccchhhHHHH-----hhhcCCce
Q 003260 360 DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG-THSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKI-----ASFKISVD 433 (835)
Q Consensus 360 gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVg-T~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l-----~~l~~~~~ 433 (835)
+..+..++|+.+..- +..+||+ ||++|. .-+.++++||||+|-|-+.....+ +..+.+..
T Consensus 170 ~~~I~~Lyg~S~~~f-----------r~plvVaTtHQLlr---Fk~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~ 235 (441)
T COG4098 170 NCDIDLLYGDSDSYF-----------RAPLVVATTHQLLR---FKQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGA 235 (441)
T ss_pred cCCeeeEecCCchhc-----------cccEEEEehHHHHH---HHhhccEEEEeccccccccCCHHHHHHHHHhhcccCc
Confidence 578889998754422 2455555 466654 235689999999999866443332 23356777
Q ss_pred EEEeecCCChhhHHHHHhcCCCcceecCCC---CCcccee--EEecccCH--------HHHHHHHHHHHhcCCeEEEEec
Q 003260 434 VLTLSATPIPRTLYLALTGFRDASLISTPP---PERLPIK--THLSAFSK--------EKVISAIKYELDRGGQVFYVLP 500 (835)
Q Consensus 434 vL~lSATp~p~tl~~~~~g~~d~s~I~~~p---~~r~~v~--~~~~~~~~--------~~l~~~i~~~l~~ggqvlVf~n 500 (835)
+|.|||||...-......+-.. .+..|. ....|+. .+...++. ..+...+......+..+++|+|
T Consensus 236 ~IylTATp~k~l~r~~~~g~~~--~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p 313 (441)
T COG4098 236 TIYLTATPTKKLERKILKGNLR--ILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFP 313 (441)
T ss_pred eEEEecCChHHHHHHhhhCCee--EeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEec
Confidence 8999999965544444444221 122221 1111222 22333322 2567777777788899999999
Q ss_pred CccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEe-cCCCCChhHH
Q 003260 501 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ-DVQQFGLAQL 579 (835)
Q Consensus 501 ~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~-d~p~~sl~~l 579 (835)
+++..+.++..|+..+|...++.+|+.- ..|.+..++|++|++++||+|+|+|+|+.+|++++.++- ..+.|+-+.+
T Consensus 314 ~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaL 391 (441)
T COG4098 314 EIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESAL 391 (441)
T ss_pred chHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHH
Confidence 9999999999999999999999999874 578888999999999999999999999999999976642 2334888999
Q ss_pred HHHhcccCCCC--CceEEEEEecCCCcCCHHHHHHHHHHHHHhh
Q 003260 580 YQLRGRVGRAD--KEAHAYLFYPDKSLLSDQALERLAALEECRE 621 (835)
Q Consensus 580 ~Qr~GRaGR~g--~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~ 621 (835)
+|.+||+||.- ..|.+++|.... +.....-.+.|++.+.
T Consensus 392 VQIaGRvGRs~~~PtGdv~FFH~G~---skaM~~A~keIk~MN~ 432 (441)
T COG4098 392 VQIAGRVGRSLERPTGDVLFFHYGK---SKAMKQARKEIKEMNK 432 (441)
T ss_pred HHHhhhccCCCcCCCCcEEEEeccc---hHHHHHHHHHHHHHHH
Confidence 99999999985 458887776544 3333333445555554
No 87
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=5.8e-27 Score=283.58 Aligned_cols=302 Identities=23% Similarity=0.236 Sum_probs=204.2
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCC--CEEEEEcccHHHHHHHHHHHHHhhc
Q 003260 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 279 ~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g--~qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
.+.|+|.|..+.... ..+..++|.+|||+|||++++.++......+ .+++|..||+++++|+++++.+.+.
T Consensus 284 ~~~p~p~Q~~~~~~~-------~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~ 356 (878)
T PRK09694 284 GYQPRQLQTLVDALP-------LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALAS 356 (878)
T ss_pred CCCChHHHHHHHhhc-------cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHH
Confidence 569999999773221 1356789999999999999998887655443 6899999999999999999986433
Q ss_pred C-CCCcEEEEecCCCCHHHHH---------------------HHHHhh-hc-CCcceeeccHHHhhc-cc-----ccCCc
Q 003260 357 K-YPDIKVGLLSRFQSKAEKE---------------------EHLDMI-KH-GHLNIIVGTHSLLGS-RV-----VYNNL 406 (835)
Q Consensus 357 ~-~~gi~V~~l~g~~s~~e~~---------------------~~l~~l-~~-G~~dIIVgT~~~L~~-~l-----~~~~l 406 (835)
. ++..++.+++|........ .++... ++ --.+|+|||...+.. .+ .++.+
T Consensus 357 ~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~ 436 (878)
T PRK09694 357 KLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGF 436 (878)
T ss_pred HhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHH
Confidence 2 2235678888754321110 111000 00 015899999865531 11 12223
Q ss_pred ----cEEEEcCccccchhhHHHHh----hh-cCCceEEEeecCCChhhHHHHHhcCCC---------cceecC-------
Q 003260 407 ----GLLVVDEEQRFGVKQKEKIA----SF-KISVDVLTLSATPIPRTLYLALTGFRD---------ASLIST------- 461 (835)
Q Consensus 407 ----~llVIDEaHr~g~~~~e~l~----~l-~~~~~vL~lSATp~p~tl~~~~~g~~d---------~s~I~~------- 461 (835)
++|||||+|-+.......|. .+ ..+..+|+||||+++.........+.. .+.+..
T Consensus 437 ~La~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 437 GLGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hhccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 47999999987553332222 11 246789999999976544322221110 011100
Q ss_pred ----C--C---CCccceeEEec--c--cCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC-CCeEEEEeCC
Q 003260 462 ----P--P---PERLPIKTHLS--A--FSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP-GVDIAIAHGQ 527 (835)
Q Consensus 462 ----~--p---~~r~~v~~~~~--~--~~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p-~~~v~~lhg~ 527 (835)
. + ..+..+..... . .....+++.+.+.+..+++++||||+++.++.+++.|++.++ +..+..+||+
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 0 0 01111111111 0 223566777777788899999999999999999999998753 4689999999
Q ss_pred CCHHHH----HHHHHHh-hcCC---eeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCC
Q 003260 528 QYSRQL----EETMEKF-AQGA---IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK 591 (835)
Q Consensus 528 m~~~er----e~vl~~F-~~g~---~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~ 591 (835)
++..+| +++++.| ++|+ ..|||||+++|+|+||+ ++.||...+| ++.|+||+||+||.++
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItdlaP---idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQLCP---VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEECCCC---HHHHHHHHhccCCCCC
Confidence 999988 4677888 6665 47999999999999996 8999887666 5899999999999975
No 88
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=3.6e-28 Score=261.19 Aligned_cols=318 Identities=19% Similarity=0.197 Sum_probs=243.5
Q ss_pred HHHHHHHhCCC--CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHH
Q 003260 270 AIAEFAAQFPY--EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 270 l~~~~~~~f~~--~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~ 347 (835)
..+.++..|++ --+|.|++|+..+.+. ..|+.|++|||+||+++|.+|++-. +..++|+.|..+|...+
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~------k~DVyVsMPTGaGKSLCyQLPaL~~---~gITIV~SPLiALIkDQ 77 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKR------KCDVYVSMPTGAGKSLCYQLPALVH---GGITIVISPLIALIKDQ 77 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhc------cCcEEEeccCCCchhhhhhchHHHh---CCeEEEehHHHHHHHHH
Confidence 44567777776 4589999999988752 5899999999999999999998754 55899999999999999
Q ss_pred HHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCc--ceeeccHHHhh---------cccccCCccEEEEcCccc
Q 003260 348 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL--NIIVGTHSLLG---------SRVVYNNLGLLVVDEEQR 416 (835)
Q Consensus 348 ~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~--dIIVgT~~~L~---------~~l~~~~l~llVIDEaHr 416 (835)
.+.+.. + .+.+..+++..+..++.+.+.++...++ .+++.||+.-. ....-.-|.++||||||.
T Consensus 78 iDHL~~-L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHC 152 (641)
T KOG0352|consen 78 IDHLKR-L----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHC 152 (641)
T ss_pred HHHHHh-c----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhh
Confidence 998876 3 5788889999999999999988877654 57889996432 222345689999999996
Q ss_pred c---c------hhhHHHHhhhcCCceEEEeecCCChhhHHHHHh--cCCCcceecCCCCCccce--eEEeccc---CHHH
Q 003260 417 F---G------VKQKEKIASFKISVDVLTLSATPIPRTLYLALT--GFRDASLISTPPPERLPI--KTHLSAF---SKEK 480 (835)
Q Consensus 417 ~---g------~~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~--g~~d~s~I~~~p~~r~~v--~~~~~~~---~~~~ 480 (835)
. | +-....|.....++.-|.||||..+........ .++.+.-+-..|.-|... ...+..+ .-..
T Consensus 153 VSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~ 232 (641)
T KOG0352|consen 153 VSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTV 232 (641)
T ss_pred HhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHh
Confidence 3 2 222334555567889999999998876543322 233333222222222211 0000000 0112
Q ss_pred HHHHHHHHHh-----------cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEE
Q 003260 481 VISAIKYELD-----------RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILI 549 (835)
Q Consensus 481 l~~~i~~~l~-----------~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILV 549 (835)
+.+.....+. ..|.-||+|.+++.||.++-.|... |+....+|+++...+|.+|.+++.++++.|++
T Consensus 233 LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~--Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~ 310 (641)
T KOG0352|consen 233 LADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIA--GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIA 310 (641)
T ss_pred HHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhc--CcchHHHhcccccchhHHHHHHHhcCCCCEEE
Confidence 2333333332 1256799999999999999999887 89999999999999999999999999999999
Q ss_pred EcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003260 550 CTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 550 aT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
||..+++|+|-|+|++||+++.+. +++-|||-.||+||.|.+.+|-++|..++.
T Consensus 311 AT~SFGMGVDKp~VRFViHW~~~q-n~AgYYQESGRAGRDGk~SyCRLYYsR~D~ 364 (641)
T KOG0352|consen 311 ATVSFGMGVDKPDVRFVIHWSPSQ-NLAGYYQESGRAGRDGKRSYCRLYYSRQDK 364 (641)
T ss_pred EEeccccccCCcceeEEEecCchh-hhHHHHHhccccccCCCccceeeeecccch
Confidence 999999999999999999999998 999999999999999999999999987764
No 89
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.95 E-value=6.3e-27 Score=271.77 Aligned_cols=304 Identities=22% Similarity=0.286 Sum_probs=207.5
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc--CCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003260 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 279 ~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~--~g~qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
.+.++++|.+.+...+ +.|+||++|||+|||.+|...+...+. ...+|++++|++-|+.|+...+...+.
T Consensus 60 ~~~lR~YQ~eivq~AL--------gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~ 131 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL--------GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLI 131 (746)
T ss_pred cccccHHHHHHhHHhh--------cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccC
Confidence 4589999999876654 478999999999999999999888765 357899999999999999877765332
Q ss_pred CCCCcEEEEecCC-CCHHHHHHHHHhhhcCCcceeeccHHHhhccc------ccCCccEEEEcCcccc-c---hhh--HH
Q 003260 357 KYPDIKVGLLSRF-QSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV------VYNNLGLLVVDEEQRF-G---VKQ--KE 423 (835)
Q Consensus 357 ~~~gi~V~~l~g~-~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l------~~~~l~llVIDEaHr~-g---~~~--~e 423 (835)
. -.+....++ .+...+...| ...+|+|.||+.|.+++ .++++.++||||||+- | +.. ++
T Consensus 132 ~---~~~T~~l~~~~~~~~r~~i~-----~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~ 203 (746)
T KOG0354|consen 132 P---YSVTGQLGDTVPRSNRGEIV-----ASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMRE 203 (746)
T ss_pred c---ccceeeccCccCCCchhhhh-----cccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHH
Confidence 2 344444444 4444444444 24799999999997654 2577999999999995 2 222 12
Q ss_pred HHhhhcCCceEEEeecCCChhhHHHH------------------------------------------------------
Q 003260 424 KIASFKISVDVLTLSATPIPRTLYLA------------------------------------------------------ 449 (835)
Q Consensus 424 ~l~~l~~~~~vL~lSATp~p~tl~~~------------------------------------------------------ 449 (835)
.+.......|+|+|||||...+....
T Consensus 204 ~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l 283 (746)
T KOG0354|consen 204 YLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLL 283 (746)
T ss_pred HHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHH
Confidence 22223334499999999863211000
Q ss_pred ----HhcC---CCcceec------C--------CCCCc--c----------------cee-----EEeccc---------
Q 003260 450 ----LTGF---RDASLIS------T--------PPPER--L----------------PIK-----THLSAF--------- 476 (835)
Q Consensus 450 ----~~g~---~d~s~I~------~--------~p~~r--~----------------~v~-----~~~~~~--------- 476 (835)
..++ .+.+.+. . +...+ + .++ .+...+
T Consensus 284 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~ 363 (746)
T KOG0354|consen 284 QQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKY 363 (746)
T ss_pred HHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHH
Confidence 0000 0000000 0 00000 0 000 000000
Q ss_pred --------------------------------CHHHHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHh-hCCCCeE
Q 003260 477 --------------------------------SKEKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQ-AFPGVDI 521 (835)
Q Consensus 477 --------------------------------~~~~l~~~i~~~l~--~ggqvlVf~n~v~~~e~l~~~L~~-~~p~~~v 521 (835)
.-+.+.+.+.+... ...+++||+.+++.++.+...|.+ ..++++.
T Consensus 364 ~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~ 443 (746)
T KOG0354|consen 364 LKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKA 443 (746)
T ss_pred HHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccccc
Confidence 00011222222222 246899999999999999999984 3344554
Q ss_pred EEEeC--------CCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCce
Q 003260 522 AIAHG--------QQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEA 593 (835)
Q Consensus 522 ~~lhg--------~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G 593 (835)
..+-| +|++.++.+++++|++|+++|||||+++|+|+||+.++.||-||+.. |....+||+|| ||. +.|
T Consensus 444 ~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~s-npIrmIQrrGR-gRa-~ns 520 (746)
T KOG0354|consen 444 EIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSS-NPIRMVQRRGR-GRA-RNS 520 (746)
T ss_pred ceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCc-cHHHHHHHhcc-ccc-cCC
Confidence 44443 59999999999999999999999999999999999999999999997 89999999999 998 679
Q ss_pred EEEEEecC
Q 003260 594 HAYLFYPD 601 (835)
Q Consensus 594 ~ay~l~~~ 601 (835)
+|+++++.
T Consensus 521 ~~vll~t~ 528 (746)
T KOG0354|consen 521 KCVLLTTG 528 (746)
T ss_pred eEEEEEcc
Confidence 99999983
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.95 E-value=5.9e-27 Score=268.27 Aligned_cols=291 Identities=22% Similarity=0.290 Sum_probs=208.6
Q ss_pred HhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhh
Q 003260 276 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 276 ~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f 355 (835)
..+.++|+|+|.+|+..+.+.... .+..+++.|||+|||.+++.++... +..++|||||++|+.||++.+...+
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~---~~~gvivlpTGaGKT~va~~~~~~~---~~~~Lvlv~~~~L~~Qw~~~~~~~~ 104 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRT---ERRGVIVLPTGAGKTVVAAEAIAEL---KRSTLVLVPTKELLDQWAEALKKFL 104 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhccc---CCceEEEeCCCCCHHHHHHHHHHHh---cCCEEEEECcHHHHHHHHHHHHHhc
Confidence 345678999999999999875532 5778999999999999998887766 3449999999999999998887644
Q ss_pred cCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----cccCCccEEEEcCccccchhhHHHHhhhcC
Q 003260 356 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFGVKQKEKIASFKI 430 (835)
Q Consensus 356 ~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l~~~~l~llVIDEaHr~g~~~~e~l~~l~~ 430 (835)
.. +..++.+.++..... + ..|.|+|.+.+... ...+.+++||+||||+.+......+.....
T Consensus 105 ~~--~~~~g~~~~~~~~~~----------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~ 171 (442)
T COG1061 105 LL--NDEIGIYGGGEKELE----------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLS 171 (442)
T ss_pred CC--ccccceecCceeccC----------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhhh
Confidence 32 135666666432111 1 36999999888653 222469999999999998877666666655
Q ss_pred Cce-EEEeecCCChhh--HHHHHhcCCCcceecCCC------CCccceeEEe--c---------------c---------
Q 003260 431 SVD-VLTLSATPIPRT--LYLALTGFRDASLISTPP------PERLPIKTHL--S---------------A--------- 475 (835)
Q Consensus 431 ~~~-vL~lSATp~p~t--l~~~~~g~~d~s~I~~~p------~~r~~v~~~~--~---------------~--------- 475 (835)
... +|+|||||.... ..........+.+..... ..-.|+.... . .
T Consensus 172 ~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~ 251 (442)
T COG1061 172 AAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARG 251 (442)
T ss_pred cccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhh
Confidence 556 999999985222 111111111111111110 0001111000 0 0
Q ss_pred ------------cCHHHHHHHHHHHHh---cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHh
Q 003260 476 ------------FSKEKVISAIKYELD---RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKF 540 (835)
Q Consensus 476 ------------~~~~~l~~~i~~~l~---~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F 540 (835)
...+.....+...+. ++.++++|+.++.+++.++..+... +. +..+.|..+..+|+.+++.|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~--~~-~~~it~~t~~~eR~~il~~f 328 (442)
T COG1061 252 TLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAP--GI-VEAITGETPKEEREAILERF 328 (442)
T ss_pred hhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCC--Cc-eEEEECCCCHHHHHHHHHHH
Confidence 000111222222233 5679999999999999999998765 55 88999999999999999999
Q ss_pred hcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCC
Q 003260 541 AQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 589 (835)
Q Consensus 541 ~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~ 589 (835)
+.|++++||++.++.+|+|+|+++++|+..... |..+|.||+||+-|.
T Consensus 329 r~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~-S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 329 RTGGIKVLVTVKVLDEGVDIPDADVLIILRPTG-SRRLFIQRLGRGLRP 376 (442)
T ss_pred HcCCCCEEEEeeeccceecCCCCcEEEEeCCCC-cHHHHHHHhhhhccC
Confidence 999999999999999999999999999999976 899999999999993
No 91
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=2e-27 Score=241.40 Aligned_cols=284 Identities=21% Similarity=0.225 Sum_probs=215.5
Q ss_pred ChHHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC---CCEEEEEcccHHHH
Q 003260 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLA 344 (835)
Q Consensus 268 ~~l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~---g~qvlVLvPtr~LA 344 (835)
+.+.+++-+.++-.|+..|.+||+...- +||+|.++..|.|||.+|.++.++.+.. ...|+|++.||+||
T Consensus 51 pellraivdcgfehpsevqhecipqail-------gmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrela 123 (387)
T KOG0329|consen 51 PELLRAIVDCGFEHPSEVQHECIPQAIL-------GMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELA 123 (387)
T ss_pred HHHHHHHHhccCCCchHhhhhhhhHHhh-------cchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHH
Confidence 4488889999989999999999998753 6899999999999999999999988765 24789999999999
Q ss_pred HHHHHHHHHhhcCC-CCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhh-----cccccCCccEEEEcCccccc
Q 003260 345 KQHFDVVSERFSKY-PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-----SRVVYNNLGLLVVDEEQRFG 418 (835)
Q Consensus 345 ~Q~~~~~~~~f~~~-~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~-----~~l~~~~l~llVIDEaHr~g 418 (835)
-|+.++... |+.+ |++++.+..|+.+.+...+.++ + .++|+||||+++. +.+.++++...|+|||+.+.
T Consensus 124 fqi~~ey~r-fskymP~vkvaVFfGG~~Ikkdee~lk---~-~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 124 FQISKEYER-FSKYMPSVKVSVFFGGLFIKKDEELLK---N-CPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKML 198 (387)
T ss_pred HHHHHHHHH-HHhhCCCceEEEEEcceeccccHHHHh---C-CCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHH
Confidence 999988864 6665 8999999999988766555543 3 5899999999875 35678899999999999874
Q ss_pred hh--hH----HHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCcc---ceeEEecccCH---HHHHHHHH
Q 003260 419 VK--QK----EKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL---PIKTHLSAFSK---EKVISAIK 486 (835)
Q Consensus 419 ~~--~~----e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~---~v~~~~~~~~~---~~l~~~i~ 486 (835)
.. .+ +..+.-+...|+.++|||.+.+.......++.|+-.|........ ..+.++..... +..+..+.
T Consensus 199 e~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLL 278 (387)
T KOG0329|consen 199 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLL 278 (387)
T ss_pred HHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhh
Confidence 32 22 233344578899999999988887777788777665544332221 12222222211 11122222
Q ss_pred HHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEE
Q 003260 487 YELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566 (835)
Q Consensus 487 ~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~V 566 (835)
..+ .-.|++||+.++.. + .| ..+ +|||+++++|+||..+|.|
T Consensus 279 d~L-eFNQVvIFvKsv~R--------------------------------l-~f---~kr-~vat~lfgrgmdiervNi~ 320 (387)
T KOG0329|consen 279 DVL-EFNQVVIFVKSVQR--------------------------------L-SF---QKR-LVATDLFGRGMDIERVNIV 320 (387)
T ss_pred hhh-hhcceeEeeehhhh--------------------------------h-hh---hhh-hHHhhhhccccCcccceee
Confidence 222 23578888766543 0 03 223 8999999999999999999
Q ss_pred EEecCCCCChhHHHHHhcccCCCCCceEEEEEecCC
Q 003260 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 567 Ii~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
++||+|. +..+|+||.||+||.|..|.++.|++.+
T Consensus 321 ~NYdmp~-~~DtYlHrv~rAgrfGtkglaitfvs~e 355 (387)
T KOG0329|consen 321 FNYDMPE-DSDTYLHRVARAGRFGTKGLAITFVSDE 355 (387)
T ss_pred eccCCCC-CchHHHHHhhhhhccccccceeehhcch
Confidence 9999998 8999999999999999999999999765
No 92
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1e-26 Score=264.52 Aligned_cols=384 Identities=16% Similarity=0.181 Sum_probs=269.9
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHH------cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVV------SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEE 377 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l------~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~ 377 (835)
--+||||.||||||.+.-..++.+- .++..+-|..|+|+.|..++.++...++.+ +..|++..++.+..
T Consensus 272 ~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~-~~eVsYqIRfd~ti---- 346 (1172)
T KOG0926|consen 272 PVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVL-GSEVSYQIRFDGTI---- 346 (1172)
T ss_pred CeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccC-ccceeEEEEecccc----
Confidence 3578999999999998554444442 124578899999999999999999889886 68999999875432
Q ss_pred HHHhhhcCCcceeeccHHHhhc----ccccCCccEEEEcCccccchhh------HHHHhhh----------cCCceEEEe
Q 003260 378 HLDMIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRFGVKQ------KEKIASF----------KISVDVLTL 437 (835)
Q Consensus 378 ~l~~l~~G~~dIIVgT~~~L~~----~l~~~~l~llVIDEaHr~g~~~------~e~l~~l----------~~~~~vL~l 437 (835)
.....|.+.|.+.|.+ ++.+..++.|||||||+-.... ...+-.+ -...++|+|
T Consensus 347 ------~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIM 420 (1172)
T KOG0926|consen 347 ------GEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIM 420 (1172)
T ss_pred ------CCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEE
Confidence 1346799999998865 5567999999999999732211 1111111 136789999
Q ss_pred ecCCChhhHHHH-HhcCCCcceecCCCCCccceeEEecccCHHH-HHHHHHHHHh-----cCCeEEEEecCccChHHHHH
Q 003260 438 SATPIPRTLYLA-LTGFRDASLISTPPPERLPIKTHLSAFSKEK-VISAIKYELD-----RGGQVFYVLPRIKGLEEPMD 510 (835)
Q Consensus 438 SATp~p~tl~~~-~~g~~d~s~I~~~p~~r~~v~~~~~~~~~~~-l~~~i~~~l~-----~ggqvlVf~n~v~~~e~l~~ 510 (835)
|||........- ..+-.-+++|.+ +...+||..++......+ +.++..+.+. ..|-+|||+....+++.+++
T Consensus 421 SATLRVsDFtenk~LFpi~pPlikV-dARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~ 499 (1172)
T KOG0926|consen 421 SATLRVSDFTENKRLFPIPPPLIKV-DARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCE 499 (1172)
T ss_pred eeeEEecccccCceecCCCCceeee-ecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHH
Confidence 999743332111 111122334433 356788888876544333 3344443331 35789999999999999999
Q ss_pred HHHhhCCC------------------------------------------------------------------------
Q 003260 511 FLQQAFPG------------------------------------------------------------------------ 518 (835)
Q Consensus 511 ~L~~~~p~------------------------------------------------------------------------ 518 (835)
.|++.+|.
T Consensus 500 kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~n 579 (1172)
T KOG0926|consen 500 KLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVN 579 (1172)
T ss_pred HHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhcccccccccc
Confidence 98887651
Q ss_pred -------------------------CeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCC
Q 003260 519 -------------------------VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 573 (835)
Q Consensus 519 -------------------------~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~ 573 (835)
..|.++++=++.+.+.+|+..-..|..-++|||+++++.+.||++.+||+.+...
T Consensus 580 ge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K 659 (1172)
T KOG0926|consen 580 GEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVK 659 (1172)
T ss_pred CCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchh
Confidence 0366777778888899999999999999999999999999999999999865421
Q ss_pred -----------------CChhHHHHHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccc
Q 003260 574 -----------------FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIR 636 (835)
Q Consensus 574 -----------------~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dl~ir 636 (835)
.|-++--||+|||||.| +|.||.+|+..-+......-.++.|.+.- ..++.|.|+.|.|-
T Consensus 660 ~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSAVf~~~Fe~fS~PEIlk~P--ve~lvLqMKsMnI~ 736 (1172)
T KOG0926|consen 660 ERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSAVFSNDFEEFSLPEILKKP--VESLVLQMKSMNID 736 (1172)
T ss_pred hhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhHHhhcchhhhccHHHhhCc--HHHHHHHHHhcCcc
Confidence 13456679999999997 89999999976554444445556665542 25788999998664
Q ss_pred cCCCcccccccCCcccchHHHHHHHHHHHHhcccccccccccCcceEEeeecCCCCccccccccCCchHHH
Q 003260 637 GFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMV 707 (835)
Q Consensus 637 g~g~~lg~~q~g~~~~vg~~~y~~~l~~ai~~~~~~~~~~~~~g~~~~~l~idp~~~~~~i~~~~~~~~~~ 707 (835)
++..+..-..++.+.++--.+.|. ++.+++.+. ..|++|+.|+-+|+.|..++.++-+.+.-..-|
T Consensus 737 ---kVvnFPFPtpPd~~~L~~Aer~L~-~LgALd~~g-~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy 802 (1172)
T KOG0926|consen 737 ---KVVNFPFPTPPDRSALEKAERRLK-ALGALDSNG-GLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPY 802 (1172)
T ss_pred ---ceecCCCCCCccHHHHHHHHHHHH-HhccccccC-CcccccchhcccccChhHHHHHHHHHhhcchhH
Confidence 444445444555555544444442 555666544 458999999999999999998887766544333
No 93
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.94 E-value=2.5e-25 Score=270.97 Aligned_cols=307 Identities=20% Similarity=0.256 Sum_probs=207.5
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCC--CEEEEEcccHHHHHHHHHHHHHhhc
Q 003260 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 279 ~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g--~qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
...|.|+|..++..+... ....+|++.++|.|||..+.+.+...+..| .++||+||. .|..||..++..+|.
T Consensus 150 ~~~l~pHQl~~~~~vl~~-----~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~ 223 (956)
T PRK04914 150 RASLIPHQLYIAHEVGRR-----HAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFN 223 (956)
T ss_pred CCCCCHHHHHHHHHHhhc-----cCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhC
Confidence 357999999998877652 235689999999999999977776655554 589999997 799999999988774
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc------cccCCccEEEEcCccccch------hhHHH
Q 003260 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNNLGLLVVDEEQRFGV------KQKEK 424 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~------l~~~~l~llVIDEaHr~g~------~~~e~ 424 (835)
+.+.++.+.............. ...+++|+|.+.+..+ +.-.++++|||||||++.. .....
T Consensus 224 ----l~~~i~~~~~~~~~~~~~~~pf--~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~ 297 (956)
T PRK04914 224 ----LRFSLFDEERYAEAQHDADNPF--ETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQV 297 (956)
T ss_pred ----CCeEEEcCcchhhhcccccCcc--ccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHH
Confidence 4455554432110000000000 1357999999888642 2235789999999999741 12333
Q ss_pred Hhhhc-CCceEEEeecCCChhhHH--HHHhcCCCcce-------------------------------------------
Q 003260 425 IASFK-ISVDVLTLSATPIPRTLY--LALTGFRDASL------------------------------------------- 458 (835)
Q Consensus 425 l~~l~-~~~~vL~lSATp~p~tl~--~~~~g~~d~s~------------------------------------------- 458 (835)
+..+. ....+|+|||||...... .++..+.++..
T Consensus 298 v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~ 377 (956)
T PRK04914 298 VEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLG 377 (956)
T ss_pred HHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhc
Confidence 44443 345789999999621100 00000000000
Q ss_pred --------------------------------------e--------cCCCCCccceeEEecccC---------------
Q 003260 459 --------------------------------------I--------STPPPERLPIKTHLSAFS--------------- 477 (835)
Q Consensus 459 --------------------------------------I--------~~~p~~r~~v~~~~~~~~--------------- 477 (835)
+ ...| .|. +..+.....
T Consensus 378 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp-~R~-~~~~~l~~~~~y~~~~~~~~~~~~ 455 (956)
T PRK04914 378 EQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFP-KRE-LHPIPLPLPEQYQTAIKVSLEARA 455 (956)
T ss_pred ccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCC-cCc-eeEeecCCCHHHHHHHHHhHHHHH
Confidence 0 0000 000 000000000
Q ss_pred ---------------------HHHHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHH
Q 003260 478 ---------------------KEKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLE 534 (835)
Q Consensus 478 ---------------------~~~l~~~i~~~l~--~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere 534 (835)
.+...+.+...+. .+.+++|||++...+..+.+.|+... |+++..+||+|+..+|+
T Consensus 456 ~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~-Gi~~~~ihG~~s~~eR~ 534 (956)
T PRK04914 456 RDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRERE-GIRAAVFHEGMSIIERD 534 (956)
T ss_pred HhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhcc-CeeEEEEECCCCHHHHH
Confidence 0011222333332 25799999999999999999996432 78999999999999999
Q ss_pred HHHHHhhcC--CeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecC
Q 003260 535 ETMEKFAQG--AIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPD 601 (835)
Q Consensus 535 ~vl~~F~~g--~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~ 601 (835)
++++.|+++ ..+|||||+++++|+|++.+++||+||.| |++..|.||+||+||.|+.+.+.++++.
T Consensus 535 ~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP-~nP~~~eQRIGR~~RiGQ~~~V~i~~~~ 602 (956)
T PRK04914 535 RAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLP-FNPDLLEQRIGRLDRIGQKHDIQIHVPY 602 (956)
T ss_pred HHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCC-CCHHHHHHHhcccccCCCCceEEEEEcc
Confidence 999999984 59999999999999999999999999999 5999999999999999988877665543
No 94
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.94 E-value=3.4e-25 Score=234.90 Aligned_cols=325 Identities=18% Similarity=0.203 Sum_probs=252.0
Q ss_pred CCCCCCh-HHHHHHHhCCC-CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEccc
Q 003260 263 PPYPKNP-AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 340 (835)
Q Consensus 263 ~~~~~~~-l~~~~~~~f~~-~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPt 340 (835)
..||+.. .-+.+.+.|-. .++|.|..||+..+. +.|+++..|||-||+++|.+|++.+ +.-++|++|.
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma-------~ed~~lil~tgggkslcyqlpal~a---dg~alvi~pl 143 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMA-------GEDAFLILPTGGGKSLCYQLPALCA---DGFALVICPL 143 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhc-------cCceEEEEeCCCccchhhhhhHHhc---CCceEeechh
Confidence 3567665 55566666665 789999999998864 5789999999999999999998765 6779999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhc--CCcceeeccHHHhhc----------ccccCCccE
Q 003260 341 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH--GHLNIIVGTHSLLGS----------RVVYNNLGL 408 (835)
Q Consensus 341 r~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~--G~~dIIVgT~~~L~~----------~l~~~~l~l 408 (835)
..|...+.-.+++. |+....+....+..+.+..-..+.+ .+..+++.||+.+.+ .+....+.+
T Consensus 144 islmedqil~lkql-----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ 218 (695)
T KOG0353|consen 144 ISLMEDQILQLKQL-----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKL 218 (695)
T ss_pred HHHHHHHHHHHHHh-----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEE
Confidence 99999988888763 7888888888777776666555544 457799999987753 223456789
Q ss_pred EEEcCcccc---------chhhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCc-ceecCCCCCccc--eeEEeccc
Q 003260 409 LVVDEEQRF---------GVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA-SLISTPPPERLP--IKTHLSAF 476 (835)
Q Consensus 409 lVIDEaHr~---------g~~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~-s~I~~~p~~r~~--v~~~~~~~ 476 (835)
|-|||+|.- .+.....+++..+++.++++|||.....+..+...+.-. .+--...-+|.. ......+-
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~ 298 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPG 298 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCC
Confidence 999999962 344456677778999999999998665554332211100 000011112222 22233445
Q ss_pred CHHHHHHHHHHHHhc---CCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCc
Q 003260 477 SKEKVISAIKYELDR---GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI 553 (835)
Q Consensus 477 ~~~~l~~~i~~~l~~---ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~i 553 (835)
+.++..+.|...+.. |..-+|+|-+..+++.++..|+.. |+....+|+.|.++++.-+-+.+..|+++|+|+|-.
T Consensus 299 n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~--gi~a~~yha~lep~dks~~hq~w~a~eiqvivatva 376 (695)
T KOG0353|consen 299 NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNH--GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVA 376 (695)
T ss_pred ChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhc--CccccccccccCccccccccccccccceEEEEEEee
Confidence 566777777777654 345688899999999999999999 899999999999999999999999999999999999
Q ss_pred CCcCCCCCCccEEEEecCCCCChhHHHH-------------------------------------------HhcccCCCC
Q 003260 554 VESGLDIQNANTIIVQDVQQFGLAQLYQ-------------------------------------------LRGRVGRAD 590 (835)
Q Consensus 554 ie~GIDIp~v~~VIi~d~p~~sl~~l~Q-------------------------------------------r~GRaGR~g 590 (835)
++.|||-|+|++||+...|. +++.||| -.||+||.+
T Consensus 377 fgmgidkpdvrfvihhsl~k-sienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~ 455 (695)
T KOG0353|consen 377 FGMGIDKPDVRFVIHHSLPK-SIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD 455 (695)
T ss_pred ecccCCCCCeeEEEecccch-hHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC
Confidence 99999999999999999998 9999999 789999999
Q ss_pred CceEEEEEecCCCcC
Q 003260 591 KEAHAYLFYPDKSLL 605 (835)
Q Consensus 591 ~~G~ay~l~~~~~~~ 605 (835)
.++.|+++|.-.+++
T Consensus 456 ~~a~cilyy~~~dif 470 (695)
T KOG0353|consen 456 MKADCILYYGFADIF 470 (695)
T ss_pred CcccEEEEechHHHH
Confidence 999999999765543
No 95
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1.4e-24 Score=257.16 Aligned_cols=309 Identities=21% Similarity=0.243 Sum_probs=224.7
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHH
Q 003260 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 272 ~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~ 351 (835)
+.........|++.|.-+--.+. + | .|....||+|||+++.+|+......|++|.|++|+-.||.|+++.+
T Consensus 71 Ea~~R~~g~~~~dvQlig~l~l~----~---G--~iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~ 141 (796)
T PRK12906 71 EGAKRVLGLRPFDVQIIGGIVLH----E---G--NIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEM 141 (796)
T ss_pred HHHHHHhCCCCchhHHHHHHHHh----c---C--CcccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHH
Confidence 44556678899999988754332 1 2 4999999999999999999988899999999999999999999999
Q ss_pred HHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHh-----hcccc-------cCCccEEEEcCcccc--
Q 003260 352 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRVV-------YNNLGLLVVDEEQRF-- 417 (835)
Q Consensus 352 ~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L-----~~~l~-------~~~l~llVIDEaHr~-- 417 (835)
...|..+ |++|+++.+..+..++...+ .+||++||..-| .+.+. .+.+.+.||||+|.+
T Consensus 142 ~~~~~~L-Gl~vg~i~~~~~~~~r~~~y------~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLi 214 (796)
T PRK12906 142 GELYRWL-GLTVGLNLNSMSPDEKRAAY------NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILI 214 (796)
T ss_pred HHHHHhc-CCeEEEeCCCCCHHHHHHHh------cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheee
Confidence 9977766 89999999988888776655 389999998644 33322 246788999999931
Q ss_pred ----------c---------------hhh-HH--------------------------------HHhhh-----------
Q 003260 418 ----------G---------------VKQ-KE--------------------------------KIASF----------- 428 (835)
Q Consensus 418 ----------g---------------~~~-~e--------------------------------~l~~l----------- 428 (835)
| +.. .+ .+..+
T Consensus 215 DeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~ 294 (796)
T PRK12906 215 DEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSEN 294 (796)
T ss_pred ccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchh
Confidence 0 000 00 00000
Q ss_pred ------------------------------------------------------------------------------cC
Q 003260 429 ------------------------------------------------------------------------------KI 430 (835)
Q Consensus 429 ------------------------------------------------------------------------------~~ 430 (835)
+.
T Consensus 295 ~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~ 374 (796)
T PRK12906 295 TALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRM 374 (796)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHh
Confidence 00
Q ss_pred CceEEEeecCCChhhHHHHHhcCCCcceecCCCCC---ccceeEEecccC---HHHHHHHHHHHHhcCCeEEEEecCccC
Q 003260 431 SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE---RLPIKTHLSAFS---KEKVISAIKYELDRGGQVFYVLPRIKG 504 (835)
Q Consensus 431 ~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~---r~~v~~~~~~~~---~~~l~~~i~~~l~~ggqvlVf~n~v~~ 504 (835)
..++-+||+|...... .+....+..++.+|+.. |......+.... ...+.+.+......+.++||||++++.
T Consensus 375 Y~kl~GmTGTa~~e~~--Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~ 452 (796)
T PRK12906 375 YKKLSGMTGTAKTEEE--EFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIES 452 (796)
T ss_pred cchhhccCCCCHHHHH--HHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 1223345555422211 12223444555555432 222121221111 123444444445678899999999999
Q ss_pred hHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCC---Ccc-----EEEEecCCCCCh
Q 003260 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ---NAN-----TIIVQDVQQFGL 576 (835)
Q Consensus 505 ~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp---~v~-----~VIi~d~p~~sl 576 (835)
++.++..|.+. ++.+.++||++...+++.+..+++.|. |+|||++++||+||+ +|. +||+++.|. +.
T Consensus 453 se~ls~~L~~~--gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pe-s~ 527 (796)
T PRK12906 453 SERLSHLLDEA--GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHE-SR 527 (796)
T ss_pred HHHHHHHHHHC--CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCC-cH
Confidence 99999999998 889999999998888888877777766 999999999999994 889 999999997 89
Q ss_pred hHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 577 AQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 577 ~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
..+.|++||+||.|.+|.+.+|++.++
T Consensus 528 ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 528 RIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred HHHHHHhhhhccCCCCcceEEEEeccc
Confidence 999999999999999999999988653
No 96
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=4.3e-24 Score=254.21 Aligned_cols=319 Identities=18% Similarity=0.197 Sum_probs=220.4
Q ss_pred HHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHh
Q 003260 275 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSER 354 (835)
Q Consensus 275 ~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~ 354 (835)
....+..|.+.|.-.--.+. ...|..++||+|||++|.+|++..+..|..|+|++||++||.|.++.+...
T Consensus 76 ~R~lg~~~ydvQliGg~~Lh---------~G~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l 146 (896)
T PRK13104 76 LRTLGLRHFDVQLIGGMVLH---------EGNIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPI 146 (896)
T ss_pred HHHcCCCcchHHHhhhhhhc---------cCccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 34566788899977644332 224899999999999999999977777889999999999999999999985
Q ss_pred hcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHh-h----ccccc-------CCccEEEEcCcccc-----
Q 003260 355 FSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-G----SRVVY-------NNLGLLVVDEEQRF----- 417 (835)
Q Consensus 355 f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L-~----~~l~~-------~~l~llVIDEaHr~----- 417 (835)
+ .+.|++|+++.++.+..++...+ .+||+||||+.| + +.+.+ +.+.++||||+|.+
T Consensus 147 ~-~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeA 219 (896)
T PRK13104 147 Y-EFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEA 219 (896)
T ss_pred h-cccCceEEEEeCCCCHHHHHHHh------CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhcc
Confidence 5 45589999999998877665444 389999999987 3 33222 57899999999942
Q ss_pred -------ch-----hh----HHHHhhhcC---------------------------------------------------
Q 003260 418 -------GV-----KQ----KEKIASFKI--------------------------------------------------- 430 (835)
Q Consensus 418 -------g~-----~~----~e~l~~l~~--------------------------------------------------- 430 (835)
|. .. ...+..+..
T Consensus 220 rtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~ 299 (896)
T PRK13104 220 RTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNI 299 (896)
T ss_pred CCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhh
Confidence 00 00 000000000
Q ss_pred -------------------------------------------------------------------------------C
Q 003260 431 -------------------------------------------------------------------------------S 431 (835)
Q Consensus 431 -------------------------------------------------------------------------------~ 431 (835)
.
T Consensus 300 ~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y 379 (896)
T PRK13104 300 MLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMY 379 (896)
T ss_pred hHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhc
Confidence 0
Q ss_pred ceEEEeecCCChhhHHHHHhcCCCcceecCCCC---CccceeEEecccCH---HHHHHHHHHHHhcCCeEEEEecCccCh
Q 003260 432 VDVLTLSATPIPRTLYLALTGFRDASLISTPPP---ERLPIKTHLSAFSK---EKVISAIKYELDRGGQVFYVLPRIKGL 505 (835)
Q Consensus 432 ~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~---~r~~v~~~~~~~~~---~~l~~~i~~~l~~ggqvlVf~n~v~~~ 505 (835)
.++-+||+|....... +..+.+..++.+|+. .|......+..... ..+++.+.+....|.+|||||++++.+
T Consensus 380 ~kLsGMTGTa~te~~E--f~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~s 457 (896)
T PRK13104 380 NKLSGMTGTADTEAYE--FQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEAS 457 (896)
T ss_pred chhccCCCCChhHHHH--HHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHH
Confidence 1222333333222111 222334444555432 22222222222221 234555555667889999999999999
Q ss_pred HHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCc----------------------
Q 003260 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA---------------------- 563 (835)
Q Consensus 506 e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v---------------------- 563 (835)
+.++..|.+. ++.+.++||++.+.+++.+.++|+.|. |+|||++++||+||.=-
T Consensus 458 E~ls~~L~~~--gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~ 533 (896)
T PRK13104 458 EFLSQLLKKE--NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAV 533 (896)
T ss_pred HHHHHHHHHc--CCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHH
Confidence 9999999998 899999999999999999999999995 99999999999999711
Q ss_pred ----------------cEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecC-CCcCCHHHHHHHHHH
Q 003260 564 ----------------NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPD-KSLLSDQALERLAAL 616 (835)
Q Consensus 564 ----------------~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~-~~~~~~~a~~rl~~i 616 (835)
=+||-...+. |..--.|.+||+||.|.+|.+-+|++- +++......+++..+
T Consensus 534 ~~~~~~~~~~V~~~GGL~VIgTerhe-srRID~QLrGRaGRQGDPGss~f~lSleD~l~~~f~~~~~~~~ 602 (896)
T PRK13104 534 KKEWQKRHDEVIAAGGLRIIGSERHE-SRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASERVASM 602 (896)
T ss_pred HHHhhhhhhHHHHcCCCEEEeeccCc-hHHHHHHhccccccCCCCCceEEEEEcCcHHHHHhChHHHHHH
Confidence 1455444443 455567999999999999999888874 444333444444443
No 97
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=3e-24 Score=255.35 Aligned_cols=320 Identities=19% Similarity=0.211 Sum_probs=224.4
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHH
Q 003260 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 272 ~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~ 351 (835)
++........|++.|.-+--.+. ...|..+.||+|||++|.+|++.....|++|.|++||..||.|+++.+
T Consensus 72 Ea~~R~lg~~~~dvQlig~l~L~---------~G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~ 142 (830)
T PRK12904 72 EASKRVLGMRHFDVQLIGGMVLH---------EGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWM 142 (830)
T ss_pred HHHHHHhCCCCCccHHHhhHHhc---------CCchhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHH
Confidence 33445567889999987754332 124999999999999999999754456888999999999999999999
Q ss_pred HHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHh-hc----cc-------ccCCccEEEEcCcccc--
Q 003260 352 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-GS----RV-------VYNNLGLLVVDEEQRF-- 417 (835)
Q Consensus 352 ~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L-~~----~l-------~~~~l~llVIDEaHr~-- 417 (835)
...+.. .|++|+++.++.+..++...+ .+||++|||+.| ++ .+ ..+.+.++||||+|.+
T Consensus 143 ~~l~~~-LGlsv~~i~~~~~~~er~~~y------~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLI 215 (830)
T PRK12904 143 GPLYEF-LGLSVGVILSGMSPEERREAY------AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILI 215 (830)
T ss_pred HHHHhh-cCCeEEEEcCCCCHHHHHHhc------CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhee
Confidence 986654 489999999998888776654 289999999877 32 22 3567889999999941
Q ss_pred ----------c----------------------------------------hhhHHHH----------------------
Q 003260 418 ----------G----------------------------------------VKQKEKI---------------------- 425 (835)
Q Consensus 418 ----------g----------------------------------------~~~~e~l---------------------- 425 (835)
| ....+.+
T Consensus 216 DeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL 295 (830)
T PRK12904 216 DEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQAL 295 (830)
T ss_pred ccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHH
Confidence 0 0000000
Q ss_pred hhh----------------------------------------------------------------cCCceEEEeecCC
Q 003260 426 ASF----------------------------------------------------------------KISVDVLTLSATP 441 (835)
Q Consensus 426 ~~l----------------------------------------------------------------~~~~~vL~lSATp 441 (835)
... +...++.+||+|.
T Consensus 296 ~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa 375 (830)
T PRK12904 296 RAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTA 375 (830)
T ss_pred HHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCc
Confidence 000 0012345566665
Q ss_pred ChhhHHHHHhcCCCcceecCCCCC---ccceeEEecccC---HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhh
Q 003260 442 IPRTLYLALTGFRDASLISTPPPE---RLPIKTHLSAFS---KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 515 (835)
Q Consensus 442 ~p~tl~~~~~g~~d~s~I~~~p~~---r~~v~~~~~~~~---~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~ 515 (835)
.... ..+....+..++.+|+.. |......+.... ...+.+.+.+....+.++||||++++.++.+++.|...
T Consensus 376 ~te~--~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~ 453 (830)
T PRK12904 376 DTEA--EEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKA 453 (830)
T ss_pred HHHH--HHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 3322 223334455556555432 222122222111 12344444444467889999999999999999999998
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCc--------------------------------
Q 003260 516 FPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA-------------------------------- 563 (835)
Q Consensus 516 ~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v-------------------------------- 563 (835)
++++.++||+ +.+|+..+.+|..+...|+|||++++||+||+=-
T Consensus 454 --gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (830)
T PRK12904 454 --GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEE 529 (830)
T ss_pred --CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhh
Confidence 8999999996 7899999999999999999999999999999831
Q ss_pred ------cEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCC-CcCCHHHHHHHH
Q 003260 564 ------NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK-SLLSDQALERLA 614 (835)
Q Consensus 564 ------~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~-~~~~~~a~~rl~ 614 (835)
=+||....+. |..--.|.+||+||.|.+|.+-+|++-+ ++......+++.
T Consensus 530 v~~~GGLhVigTerhe-srRid~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~ 586 (830)
T PRK12904 530 VLEAGGLHVIGTERHE-SRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVK 586 (830)
T ss_pred HHHcCCCEEEecccCc-hHHHHHHhhcccccCCCCCceeEEEEcCcHHHHhhchHHHH
Confidence 1566555554 5666789999999999999999988844 333333334443
No 98
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=1.7e-24 Score=255.75 Aligned_cols=304 Identities=20% Similarity=0.243 Sum_probs=212.7
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCC-----------CEEEEEcccHHHHHHHHH
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-----------KQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g-----------~qvlVLvPtr~LA~Q~~~ 349 (835)
.++++|.+..+..+.. ..++++|||||+|||.+|++.+++.+..+ .++++++|.++|++.+..
T Consensus 309 sLNrIQS~v~daAl~~------~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vg 382 (1674)
T KOG0951|consen 309 SLNRIQSKVYDAALRG------DENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVG 382 (1674)
T ss_pred hhhHHHHHHHHHHhcC------cCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHH
Confidence 5789999998887752 35799999999999999999999887542 379999999999999999
Q ss_pred HHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhh---c---c-cccCCccEEEEcCccccchh--
Q 003260 350 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG---S---R-VVYNNLGLLVVDEEQRFGVK-- 420 (835)
Q Consensus 350 ~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~---~---~-l~~~~l~llVIDEaHr~g~~-- 420 (835)
.|.+++..+ |++|+-++|..+..-. ++ ....|+|+||+..- + + ...+-++++||||.|.....
T Consensus 383 sfSkRla~~-GI~V~ElTgD~~l~~~--qi-----eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRG 454 (1674)
T KOG0951|consen 383 SFSKRLAPL-GITVLELTGDSQLGKE--QI-----EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRG 454 (1674)
T ss_pred HHHhhcccc-CcEEEEecccccchhh--hh-----hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccc
Confidence 999999998 8999999997543221 12 23789999998662 1 1 12235789999999987321
Q ss_pred -hHHH--------HhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCC-CccceeEEecc---c--------CHH
Q 003260 421 -QKEK--------IASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP-ERLPIKTHLSA---F--------SKE 479 (835)
Q Consensus 421 -~~e~--------l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~-~r~~v~~~~~~---~--------~~~ 479 (835)
..+. ...-..+.+++++|||.+.-.--.........-+....+. +..|....+.. . ..+
T Consensus 455 pvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe 534 (1674)
T KOG0951|consen 455 PVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNE 534 (1674)
T ss_pred hHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHH
Confidence 1111 1122357899999999754332111111111111111111 12233222211 1 122
Q ss_pred HHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC-----------------------------C------CCeEEEE
Q 003260 480 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF-----------------------------P------GVDIAIA 524 (835)
Q Consensus 480 ~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~-----------------------------p------~~~v~~l 524 (835)
..++.+.+...+ +||+||+.+++++-+.++.++..+ | .++++++
T Consensus 535 ~~yeKVm~~agk-~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIH 613 (1674)
T KOG0951|consen 535 ACYEKVLEHAGK-NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIH 613 (1674)
T ss_pred HHHHHHHHhCCC-CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceee
Confidence 344455444444 899999999888777766665211 1 1479999
Q ss_pred eCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCC----------ChhHHHHHhcccCCCC--Cc
Q 003260 525 HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF----------GLAQLYQLRGRVGRAD--KE 592 (835)
Q Consensus 525 hg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~----------sl~~l~Qr~GRaGR~g--~~ 592 (835)
|++|+..+|+.+.+-|.+|.++|||||..++.|+|+| +++||+-+..-| ++.+..||.||+||.+ ..
T Consensus 614 hAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlp-ahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~ 692 (1674)
T KOG0951|consen 614 HAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLP-AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTC 692 (1674)
T ss_pred ccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCC-cceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcC
Confidence 9999999999999999999999999999999999999 899998655433 4567899999999986 44
Q ss_pred eEEEEEec
Q 003260 593 AHAYLFYP 600 (835)
Q Consensus 593 G~ay~l~~ 600 (835)
|..++...
T Consensus 693 gegiiit~ 700 (1674)
T KOG0951|consen 693 GEGIIITD 700 (1674)
T ss_pred CceeeccC
Confidence 55554443
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.92 E-value=7.3e-24 Score=263.25 Aligned_cols=298 Identities=18% Similarity=0.243 Sum_probs=194.0
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC--CCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~--g~qvlVLvPtr~LA~Q~~~~~~~~f~~ 357 (835)
+.++++|.+||..+.+.+.+ ..+..|++++||||||.+++..+...+.. .++||||||+++|+.|+.+.|.. ++.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~--g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~-~~~ 488 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVE--GQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKD-TKI 488 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHh--ccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHh-ccc
Confidence 57999999999999877643 23578999999999999876665554433 47999999999999999999986 322
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc----------cccCCccEEEEcCccccc---------
Q 003260 358 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR----------VVYNNLGLLVVDEEQRFG--------- 418 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~----------l~~~~l~llVIDEaHr~g--------- 418 (835)
..+..+..+.+.. . .-........+|+|+|...+.+. ..+..+++||||||||..
T Consensus 489 ~~~~~~~~i~~i~---~---L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 489 EGDQTFASIYDIK---G---LEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred ccccchhhhhchh---h---hhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 1111111111100 0 00111223478999999877432 235678899999999942
Q ss_pred ----------hhhHHHHhhhcCCceEEEeecCCChhhHHHHHh---------cCCCcceecCCCCCccc-----------
Q 003260 419 ----------VKQKEKIASFKISVDVLTLSATPIPRTLYLALT---------GFRDASLISTPPPERLP----------- 468 (835)
Q Consensus 419 ----------~~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~---------g~~d~s~I~~~p~~r~~----------- 468 (835)
+.....+..+. +...|+|||||...+...+-. .+.+..++...|+..+.
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yF-dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~ 641 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYF-DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFE 641 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhc-CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccc
Confidence 12222232222 467899999997655432210 01111111100000000
Q ss_pred ----ee-----E-Ee--ccc------CH-------------HHHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhh
Q 003260 469 ----IK-----T-HL--SAF------SK-------------EKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQA 515 (835)
Q Consensus 469 ----v~-----~-~~--~~~------~~-------------~~l~~~i~~~l~--~ggqvlVf~n~v~~~e~l~~~L~~~ 515 (835)
+. . .+ ... .. ..+...+.+.+. .+++++|||.++++++.+++.|.+.
T Consensus 642 ~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~ 721 (1123)
T PRK11448 642 KGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEA 721 (1123)
T ss_pred ccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 00 0 00 000 00 011112222222 2379999999999999999888765
Q ss_pred C----CCC---eEEEEeCCCCHHHHHHHHHHhhcCCe-eEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccC
Q 003260 516 F----PGV---DIAIAHGQQYSRQLEETMEKFAQGAI-KILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 587 (835)
Q Consensus 516 ~----p~~---~v~~lhg~m~~~ere~vl~~F~~g~~-~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaG 587 (835)
+ |+. .+..+||+++ +++.++++|+++.. .|+|+++++.+|+|+|.+.+||+++.++ |...|.|++||+.
T Consensus 722 f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvk-S~~lf~QmIGRgt 798 (1123)
T PRK11448 722 FKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVR-SRILYEQMLGRAT 798 (1123)
T ss_pred HHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCC-CHHHHHHHHhhhc
Confidence 3 332 5667899975 56789999999876 7999999999999999999999999997 9999999999999
Q ss_pred CCC
Q 003260 588 RAD 590 (835)
Q Consensus 588 R~g 590 (835)
|..
T Consensus 799 R~~ 801 (1123)
T PRK11448 799 RLC 801 (1123)
T ss_pred cCC
Confidence 964
No 100
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.92 E-value=1e-23 Score=250.05 Aligned_cols=277 Identities=16% Similarity=0.188 Sum_probs=215.1
Q ss_pred EEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCC
Q 003260 307 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386 (835)
Q Consensus 307 Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~ 386 (835)
+..+.+|||||++|+.++...+..|+++|||+|...|+.|+.++|+++|+. ..|.++++..+..++.+.|..+.+|+
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~---~~v~~lhS~l~~~~R~~~w~~~~~G~ 240 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGA---GDVAVLSAGLGPADRYRRWLAVLRGQ 240 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCC---CcEEEECCCCCHHHHHHHHHHHhCCC
Confidence 334446999999999999999999999999999999999999999998852 56899999999999999999999999
Q ss_pred cceeeccHHHhhcccccCCccEEEEcCccccchhhH-------H---HHhhhcCCceEEEeecCCChhhHHHHHhcCCCc
Q 003260 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK-------E---KIASFKISVDVLTLSATPIPRTLYLALTGFRDA 456 (835)
Q Consensus 387 ~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~-------e---~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~ 456 (835)
++|||||.+.++ .++.++++|||||+|...+++. . .+.....+..+|+.||||+.++++.+..++...
T Consensus 241 ~~IViGtRSAvF--aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~~~g~~~~ 318 (665)
T PRK14873 241 ARVVVGTRSAVF--APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALVESGWAHD 318 (665)
T ss_pred CcEEEEcceeEE--eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHhcCccee
Confidence 999999999887 6789999999999997544322 2 223335789999999999999998888776442
Q ss_pred ceec-CCCCCccc-eeEEec-------------ccCHHHHHHHHHHHHhcCCeEEEEecCc-------------------
Q 003260 457 SLIS-TPPPERLP-IKTHLS-------------AFSKEKVISAIKYELDRGGQVFYVLPRI------------------- 502 (835)
Q Consensus 457 s~I~-~~p~~r~~-v~~~~~-------------~~~~~~l~~~i~~~l~~ggqvlVf~n~v------------------- 502 (835)
.... .......| +...-. ..-...+.+++.+.+++| |+|+|+|++
T Consensus 319 ~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l~C~~Cg~~~~C~~ 397 (665)
T PRK14873 319 LVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSLACARCRTPARCRH 397 (665)
T ss_pred eccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCeeEhhhCcCeeECCC
Confidence 1111 00011111 111100 001246789999999999 999999872
Q ss_pred ----------------------------------------cChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhc
Q 003260 503 ----------------------------------------KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQ 542 (835)
Q Consensus 503 ----------------------------------------~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~ 542 (835)
-+++.+.+.|.+.||+.+|..+.++ .+++.|.
T Consensus 398 C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d-------~~l~~~~- 469 (665)
T PRK14873 398 CTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSGGD-------QVVDTVD- 469 (665)
T ss_pred CCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEChH-------HHHHhhc-
Confidence 2478899999999999999876543 4788896
Q ss_pred CCeeEEEEcC----cCCcCCCCCCccEEEEecCCC------CC-----hhHHHHHhcccCCCCCceEEEEEecCC
Q 003260 543 GAIKILICTN----IVESGLDIQNANTIIVQDVQQ------FG-----LAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 543 g~~~ILVaT~----iie~GIDIp~v~~VIi~d~p~------~s-----l~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
++.+|||+|+ ++. ++++.|++.|++. |. +..+.|..||+||.++.|.+++...++
T Consensus 470 ~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p~ 539 (665)
T PRK14873 470 AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAESS 539 (665)
T ss_pred cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCC
Confidence 5999999999 565 4678888877652 21 345789999999999999999876544
No 101
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.92 E-value=1.7e-24 Score=257.84 Aligned_cols=387 Identities=18% Similarity=0.224 Sum_probs=259.2
Q ss_pred HhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHH-c--CCCEEEEEcccHHHHHHHHHHHHHhhcCCCC
Q 003260 284 PDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-S--AGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 360 (835)
Q Consensus 284 p~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l-~--~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~g 360 (835)
..+.+.+..+.+ ...++|+|.||||||.+....++... . ....+++..|+|.-|..+++++...-+..+|
T Consensus 176 ~~r~~Il~~i~~-------~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 176 KMRDTILDAIEE-------NQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred HHHHHHHHHHHh-------CceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 445555555543 46789999999999999766666543 2 2457999999999999999999887776678
Q ss_pred cEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc----ccccCCccEEEEcCccccc------hhhHHHHhhhcC
Q 003260 361 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRFG------VKQKEKIASFKI 430 (835)
Q Consensus 361 i~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~----~l~~~~l~llVIDEaHr~g------~~~~e~l~~l~~ 430 (835)
-.|++-.+..+... -...+.++|.+.|.+ +..+.++..||+||+|+-+ .-....+...++
T Consensus 249 ~~VGYqvrl~~~~s----------~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p 318 (924)
T KOG0920|consen 249 EEVGYQVRLESKRS----------RETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP 318 (924)
T ss_pred CeeeEEEeeecccC----------CceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC
Confidence 88888888654322 226799999987765 3457889999999999732 223344555679
Q ss_pred CceEEEeecCCChhhHHHHHhcCCCcceecCCCCCccceeEEe-----------------------------------cc
Q 003260 431 SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHL-----------------------------------SA 475 (835)
Q Consensus 431 ~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~-----------------------------------~~ 475 (835)
+.++|+||||...+ .+..++....++.++ ...+|+.+++ ..
T Consensus 319 ~LkvILMSAT~dae---~fs~YF~~~pvi~i~-grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (924)
T KOG0920|consen 319 DLKVILMSATLDAE---LFSDYFGGCPVITIP-GRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPE 394 (924)
T ss_pred CceEEEeeeecchH---HHHHHhCCCceEeec-CCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhcccc
Confidence 99999999998643 344444455555442 3333332211 01
Q ss_pred cCHHHHHHHHHHHH---hcCCeEEEEecCccChHHHHHHHHhhCC-----CCeEEEEeCCCCHHHHHHHHHHhhcCCeeE
Q 003260 476 FSKEKVISAIKYEL---DRGGQVFYVLPRIKGLEEPMDFLQQAFP-----GVDIAIAHGQQYSRQLEETMEKFAQGAIKI 547 (835)
Q Consensus 476 ~~~~~l~~~i~~~l---~~ggqvlVf~n~v~~~e~l~~~L~~~~p-----~~~v~~lhg~m~~~ere~vl~~F~~g~~~I 547 (835)
.+. .++..+...+ ...|.+|||.|...++..+.+.|....+ .+-+.++|+.|+..+++.++..-..|..+|
T Consensus 395 id~-~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKI 473 (924)
T KOG0920|consen 395 IDY-DLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKI 473 (924)
T ss_pred ccH-HHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchh
Confidence 111 2222222222 3358999999999999999999976432 256889999999999999999999999999
Q ss_pred EEEcCcCCcCCCCCCccEEEEecC--------CC---------CChhHHHHHhcccCCCCCceEEEEEecCCCcCCHHHH
Q 003260 548 LICTNIVESGLDIQNANTIIVQDV--------QQ---------FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQAL 610 (835)
Q Consensus 548 LVaT~iie~GIDIp~v~~VIi~d~--------p~---------~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~ 610 (835)
+++|+|+|++|.|+++-+||+.+. .. .+-+...||+|||||. +.|.||.+|+..........
T Consensus 474 IlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~~~~~ 552 (924)
T KOG0920|consen 474 ILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEKLMLA 552 (924)
T ss_pred hhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhhcccc
Confidence 999999999999999999998543 21 1345678999999998 68999999998765444333
Q ss_pred HHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHHHHHHHHHHHHhcccccccccccCcceEEeeecCC
Q 003260 611 ERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININP 690 (835)
Q Consensus 611 ~rl~~i~~~~~l~sg~~la~~dl~irg~g~~lg~~q~g~~~~vg~~~y~~~l~~ai~~~~~~~~~~~~~g~~~~~l~idp 690 (835)
-.+++|.+... ....+..+-+++......|.. -.+.+..-.+..-.+.|. .|.++.... ..|++|...+.+|+||
T Consensus 553 ~q~PEilR~pL--~~l~L~iK~l~~~~~~~fLsk-aldpP~~~~v~~a~~~L~-~igaL~~~e-~LT~LG~~la~lPvd~ 627 (924)
T KOG0920|consen 553 YQLPEILRTPL--EELCLHIKVLEQGSIKAFLSK-ALDPPPADAVDLAIERLK-QIGALDESE-ELTPLGLHLASLPVDV 627 (924)
T ss_pred cCChHHHhChH--HHhhheeeeccCCCHHHHHHH-hcCCCChHHHHHHHHHHH-HhccccCcc-cchHHHHHHHhCCCcc
Confidence 44455544321 112222222221111111111 112233333333334443 344454433 4689999999999999
Q ss_pred CCcccccc
Q 003260 691 RLPSEYIN 698 (835)
Q Consensus 691 ~~~~~~i~ 698 (835)
.+++.++-
T Consensus 628 ~igK~ll~ 635 (924)
T KOG0920|consen 628 RIGKLLLF 635 (924)
T ss_pred ccchhhee
Confidence 99986543
No 102
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=1.7e-23 Score=242.46 Aligned_cols=306 Identities=25% Similarity=0.336 Sum_probs=222.6
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHH
Q 003260 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 350 (835)
Q Consensus 271 ~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~ 350 (835)
..+....+||+|-++|++||..+.+ +..++|.|+|.+|||++|-.++..+...+.+++|..|-++|.+|.++.
T Consensus 287 Vpe~a~~~pFelD~FQk~Ai~~ler-------g~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRD 359 (1248)
T KOG0947|consen 287 VPEMALIYPFELDTFQKEAIYHLER-------GDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRD 359 (1248)
T ss_pred chhHHhhCCCCccHHHHHHHHHHHc-------CCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHH
Confidence 3455677999999999999988754 567999999999999999988887777889999999999999999999
Q ss_pred HHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc-----ccCCccEEEEcCcccc-----chh
Q 003260 351 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-----VYNNLGLLVVDEEQRF-----GVK 420 (835)
Q Consensus 351 ~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l-----~~~~l~llVIDEaHr~-----g~~ 420 (835)
|++.|++ |++++|+... +-++.++|.|-+.|...+ ..+++.+||+||+|-. |+-
T Consensus 360 Fk~tF~D-----vgLlTGDvqi-----------nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvV 423 (1248)
T KOG0947|consen 360 FKETFGD-----VGLLTGDVQI-----------NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVV 423 (1248)
T ss_pred HHHhccc-----cceeecceee-----------CCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeeccccccccc
Confidence 9998865 4478886432 134779999988886533 2478999999999976 444
Q ss_pred hHHHHhhhcCCceEEEeecCCChhhHHHH-HhcC---CCcceecCCCCCccceeEEeccc--------------------
Q 003260 421 QKEKIASFKISVDVLTLSATPIPRTLYLA-LTGF---RDASLISTPPPERLPIKTHLSAF-------------------- 476 (835)
Q Consensus 421 ~~e~l~~l~~~~~vL~lSATp~p~tl~~~-~~g~---~d~s~I~~~p~~r~~v~~~~~~~-------------------- 476 (835)
.-+.+..++..+++|+||||. |+++.++ +.|- +...++.+. .+.+|...++..-
T Consensus 424 WEEViIMlP~HV~~IlLSATV-PN~~EFA~WIGRtK~K~IyViST~-kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~ 501 (1248)
T KOG0947|consen 424 WEEVIIMLPRHVNFILLSATV-PNTLEFADWIGRTKQKTIYVISTS-KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKD 501 (1248)
T ss_pred ceeeeeeccccceEEEEeccC-CChHHHHHHhhhccCceEEEEecC-CCccceEEEEEeccceehhhcccchhhhhcchh
Confidence 446677788999999999996 4444433 2221 122222221 1111111110000
Q ss_pred -----------------------------------------------CH--HHHHHHHHHHHhcC-CeEEEEecCccChH
Q 003260 477 -----------------------------------------------SK--EKVISAIKYELDRG-GQVFYVLPRIKGLE 506 (835)
Q Consensus 477 -----------------------------------------------~~--~~l~~~i~~~l~~g-gqvlVf~n~v~~~e 506 (835)
.. ..+.+.+.....+. -.++|||=++..|+
T Consensus 502 a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCd 581 (1248)
T KOG0947|consen 502 AKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCD 581 (1248)
T ss_pred hhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHH
Confidence 00 01222222211111 35889998888899
Q ss_pred HHHHHHHhh---------------------C-------CC---------CeEEEEeCCCCHHHHHHHHHHhhcCCeeEEE
Q 003260 507 EPMDFLQQA---------------------F-------PG---------VDIAIAHGQQYSRQLEETMEKFAQGAIKILI 549 (835)
Q Consensus 507 ~l~~~L~~~---------------------~-------p~---------~~v~~lhg~m~~~ere~vl~~F~~g~~~ILV 549 (835)
+.++.|... + |. -.++++||++-+--++-|..-|..|-++||+
T Consensus 582 e~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLF 661 (1248)
T KOG0947|consen 582 EYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLF 661 (1248)
T ss_pred HHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEe
Confidence 888877543 1 11 1689999999999999999999999999999
Q ss_pred EcCcCCcCCCCCCccEEEEecCCC--------CChhHHHHHhcccCCCC--CceEEEEEecCC
Q 003260 550 CTNIVESGLDIQNANTIIVQDVQQ--------FGLAQLYQLRGRVGRAD--KEAHAYLFYPDK 602 (835)
Q Consensus 550 aT~iie~GIDIp~v~~VIi~d~p~--------~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~ 602 (835)
||.++++|||.| +++||...... .++-+|+|++|||||.| ..|++++++...
T Consensus 662 ATETFAMGVNMP-ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 662 ATETFAMGVNMP-ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred ehhhhhhhcCCC-ceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 999999999999 88888655432 24678999999999998 679999888765
No 103
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=7.7e-24 Score=254.56 Aligned_cols=310 Identities=23% Similarity=0.297 Sum_probs=221.9
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHH
Q 003260 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 273 ~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~ 352 (835)
.+...+||+|-++|++|+..+.+ +..+++|+|||+|||.++..++..++.+|.+++|+.|.++|.+|.|..|.
T Consensus 111 ~~~~~~~F~LD~fQ~~a~~~Ler-------~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~ 183 (1041)
T COG4581 111 PPAREYPFELDPFQQEAIAILER-------GESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLL 183 (1041)
T ss_pred cHHHhCCCCcCHHHHHHHHHHhC-------CCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHH
Confidence 45567899999999999988854 46799999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc-----ccCCccEEEEcCccccchh-----hH
Q 003260 353 ERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-----VYNNLGLLVVDEEQRFGVK-----QK 422 (835)
Q Consensus 353 ~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l-----~~~~l~llVIDEaHr~g~~-----~~ 422 (835)
.+|++. --.+++++|+.+. ++.+.++|.|-+.|.+.+ .+.++..||+||+|-++.. .-
T Consensus 184 ~~fgdv-~~~vGL~TGDv~I-----------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWE 251 (1041)
T COG4581 184 AKFGDV-ADMVGLMTGDVSI-----------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWE 251 (1041)
T ss_pred HHhhhh-hhhccceecceee-----------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHH
Confidence 998765 2357888887654 256889999988776533 3567899999999988543 33
Q ss_pred HHHhhhcCCceEEEeecCCCh-hhHHHHHhcC--CCcceecCCCCCccceeEEeccc---------CH----H---HHHH
Q 003260 423 EKIASFKISVDVLTLSATPIP-RTLYLALTGF--RDASLISTPPPERLPIKTHLSAF---------SK----E---KVIS 483 (835)
Q Consensus 423 e~l~~l~~~~~vL~lSATp~p-~tl~~~~~g~--~d~s~I~~~p~~r~~v~~~~~~~---------~~----~---~l~~ 483 (835)
+.|..++..+++|+||||.+. ..+..+.... .+..++.+. ....|...++... .. . ....
T Consensus 252 E~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~-~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~ 330 (1041)
T COG4581 252 EVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTE-HRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANR 330 (1041)
T ss_pred HHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeec-CCCCCeEEEEecCCceeeeecccccchhhcchhhhh
Confidence 556777888999999999633 2222232222 222333221 1112222211100 00 0 0000
Q ss_pred H--------------------------------------HHHHH--hcCCeEEEEecCccChHHHHHHHHhh--------
Q 003260 484 A--------------------------------------IKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQA-------- 515 (835)
Q Consensus 484 ~--------------------------------------i~~~l--~~ggqvlVf~n~v~~~e~l~~~L~~~-------- 515 (835)
. +...+ .+.-.+++|+=++..|+..+..+..+
T Consensus 331 ~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~ 410 (1041)
T COG4581 331 SLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEK 410 (1041)
T ss_pred hhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcH
Confidence 0 11111 12246788887777766654443310
Q ss_pred ---------------------CC-C---------CeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCcc
Q 003260 516 ---------------------FP-G---------VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564 (835)
Q Consensus 516 ---------------------~p-~---------~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~ 564 (835)
+| + -.++++|++|=+..++.+..-|..|-++|+++|.+++.|+|.| ++
T Consensus 411 e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP-ar 489 (1041)
T COG4581 411 ERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP-AR 489 (1041)
T ss_pred HHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc-cc
Confidence 12 1 1467899999999999999999999999999999999999999 88
Q ss_pred EEEEecCCCC--------ChhHHHHHhcccCCCC--CceEEEEEecCCC
Q 003260 565 TIIVQDVQQF--------GLAQLYQLRGRVGRAD--KEAHAYLFYPDKS 603 (835)
Q Consensus 565 ~VIi~d~p~~--------sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~~ 603 (835)
+|+.....+| +..+|+|+.|||||.| ..|.+++..++..
T Consensus 490 tvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~ 538 (1041)
T COG4581 490 TVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFE 538 (1041)
T ss_pred ceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCC
Confidence 8887665544 4678999999999999 5688888866554
No 104
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=4.1e-24 Score=242.50 Aligned_cols=301 Identities=23% Similarity=0.306 Sum_probs=221.7
Q ss_pred HhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhh
Q 003260 276 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 276 ~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f 355 (835)
..+||++-|+|..||.-+- ++..+||.|-|.+|||.+|-.++...+....+|+|..|-++|.+|.|+++.+.|
T Consensus 124 k~YPF~LDpFQ~~aI~Cid-------r~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 124 KTYPFTLDPFQSTAIKCID-------RGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred cCCCcccCchHhhhhhhhc-------CCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHh
Confidence 5689999999999998763 356799999999999999999999999999999999999999999999999988
Q ss_pred cCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc-----ccCCccEEEEcCcccc-----chhhHHHH
Q 003260 356 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-----VYNNLGLLVVDEEQRF-----GVKQKEKI 425 (835)
Q Consensus 356 ~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l-----~~~~l~llVIDEaHr~-----g~~~~e~l 425 (835)
+ .|++.+|+.+.. -.+..+|.|-+.|...+ ..+.+.+||+||+|-| |+-.-+.|
T Consensus 197 ~-----DVGLMTGDVTIn-----------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETI 260 (1041)
T KOG0948|consen 197 K-----DVGLMTGDVTIN-----------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETI 260 (1041)
T ss_pred c-----ccceeecceeeC-----------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeE
Confidence 5 467778765432 34668888988886533 3578999999999987 44444567
Q ss_pred hhhcCCceEEEeecCCChhhHHHHH--hcC-CCc-ceecCCCCCccceeEEe---------------cccCHH-------
Q 003260 426 ASFKISVDVLTLSATPIPRTLYLAL--TGF-RDA-SLISTPPPERLPIKTHL---------------SAFSKE------- 479 (835)
Q Consensus 426 ~~l~~~~~vL~lSATp~p~tl~~~~--~g~-~d~-s~I~~~p~~r~~v~~~~---------------~~~~~~------- 479 (835)
.-++.+++.++||||. |+..+++. ..+ ..+ .++.+. -+..|.+.|+ ..+..+
T Consensus 261 IllP~~vr~VFLSATi-PNA~qFAeWI~~ihkQPcHVVYTd-yRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~ 338 (1041)
T KOG0948|consen 261 ILLPDNVRFVFLSATI-PNARQFAEWICHIHKQPCHVVYTD-YRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMS 338 (1041)
T ss_pred EeccccceEEEEeccC-CCHHHHHHHHHHHhcCCceEEeec-CCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHH
Confidence 7788999999999996 44433332 221 111 122211 1111111111 011111
Q ss_pred -------------------------------HHHHHHHHHHhcC-CeEEEEecCccChHHHHHHHHhhC-----------
Q 003260 480 -------------------------------KVISAIKYELDRG-GQVFYVLPRIKGLEEPMDFLQQAF----------- 516 (835)
Q Consensus 480 -------------------------------~l~~~i~~~l~~g-gqvlVf~n~v~~~e~l~~~L~~~~----------- 516 (835)
.+...+...+.+. ..|+||+=++++||..+-.+..+.
T Consensus 339 ~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~ 418 (1041)
T KOG0948|consen 339 VLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVE 418 (1041)
T ss_pred HhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHH
Confidence 2333343334333 579999988888888765544321
Q ss_pred -----------------CC---------CeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEec
Q 003260 517 -----------------PG---------VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570 (835)
Q Consensus 517 -----------------p~---------~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d 570 (835)
|. -.++++|+++-+--++-+.--|.+|-+++|+||.+++.|+|.| +.+|+...
T Consensus 419 ~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMP-AkTVvFT~ 497 (1041)
T KOG0948|consen 419 TIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMP-AKTVVFTA 497 (1041)
T ss_pred HHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCc-ceeEEEee
Confidence 11 2689999999999999999999999999999999999999999 89998877
Q ss_pred CCCCC--------hhHHHHHhcccCCCC--CceEEEEEecCC
Q 003260 571 VQQFG--------LAQLYQLRGRVGRAD--KEAHAYLFYPDK 602 (835)
Q Consensus 571 ~p~~s--------l~~l~Qr~GRaGR~g--~~G~ay~l~~~~ 602 (835)
+..|+ --+|+|+.|||||.| ..|.|++++++.
T Consensus 498 ~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 498 VRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 66553 457999999999999 569999988754
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.89 E-value=2.8e-22 Score=242.55 Aligned_cols=312 Identities=20% Similarity=0.232 Sum_probs=210.0
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCC-cEEEEccCCCcccHHHHHHHHHHHcC----CCEEEEEcccHHHHHHHHHHHHHhh
Q 003260 281 EPTPDQKKAFLDVERDLTERETPM-DRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~-d~Ll~a~TGsGKT~val~a~l~~l~~----g~qvlVLvPtr~LA~Q~~~~~~~~f 355 (835)
...+.|..++..+.... .+. .+++.+|||+|||++++.++...... ..+++++.|+++++.++++++++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~----~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 195 EGYELQEKALELILRLE----KRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhhHHHHHHHHHHHhcc----cccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 55899999999888643 234 89999999999999999888877655 5799999999999999999999866
Q ss_pred cCCCCcEEEEecCCCCHHHHHHH----------HHhhhcCCcceeeccHHHhhc-cc---ccC-----CccEEEEcCccc
Q 003260 356 SKYPDIKVGLLSRFQSKAEKEEH----------LDMIKHGHLNIIVGTHSLLGS-RV---VYN-----NLGLLVVDEEQR 416 (835)
Q Consensus 356 ~~~~gi~V~~l~g~~s~~e~~~~----------l~~l~~G~~dIIVgT~~~L~~-~l---~~~-----~l~llVIDEaHr 416 (835)
+.. ++....+++.....-.... .......-..++++|+-.... .. .+. -.+++|+||+|.
T Consensus 271 ~~~-~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 271 GLF-SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred ccc-ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 554 2332212332211100000 000000112333334332221 11 111 236799999998
Q ss_pred cchh-hHHHHhh-----hcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCC-----CccceeEEe-cccCH---HHH
Q 003260 417 FGVK-QKEKIAS-----FKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP-----ERLPIKTHL-SAFSK---EKV 481 (835)
Q Consensus 417 ~g~~-~~e~l~~-----l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~-----~r~~v~~~~-~~~~~---~~l 481 (835)
+... ....+.. ...+..+|+||||+++--.............+..... +...+.... ..... ...
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 429 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEEL 429 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhh
Confidence 7654 3322221 1358899999999977655544444333332222111 111111110 11111 135
Q ss_pred HHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhh----cCCeeEEEEcCcCCcC
Q 003260 482 ISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFA----QGAIKILICTNIVESG 557 (835)
Q Consensus 482 ~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~----~g~~~ILVaT~iie~G 557 (835)
...+...+..+.+++|+||++..+.++++.|+...+ .+..+||++...+|.+.++.+. .+...|+|||+++|.|
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~--~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEag 507 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP--KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAG 507 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC--CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEE
Confidence 566677778899999999999999999999999865 8999999999999998888544 4678899999999999
Q ss_pred CCCCCccEEEEecCCCCChhHHHHHhcccCCCC--CceEEEEEecCCC
Q 003260 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD--KEAHAYLFYPDKS 603 (835)
Q Consensus 558 IDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~~ 603 (835)
+|+. .+.+|-.-+| +.+++||+||++|.| ..|.+|++.....
T Consensus 508 vDid-fd~mITe~aP---idSLIQR~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 508 VDID-FDVLITELAP---IDSLIQRAGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred eccc-cCeeeecCCC---HHHHHHHHHHHhhcccccCCceeEeecccC
Confidence 9998 8888865554 689999999999999 6788888776554
No 106
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.89 E-value=3.3e-21 Score=235.87 Aligned_cols=313 Identities=15% Similarity=0.242 Sum_probs=212.5
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc---CCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~---~g~qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
..++|+|.+++..+..-. ..+.+.|++.++|.|||++++..+..... ..+.+|||||. .|..||.+++.. |.
T Consensus 168 ~~Lr~YQleGlnWLi~l~---~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~k-w~ 242 (1033)
T PLN03142 168 GKMRDYQLAGLNWLIRLY---ENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRR-FC 242 (1033)
T ss_pred cchHHHHHHHHHHHHHHH---hcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHH-HC
Confidence 378999999999876533 23567899999999999987655433221 23578999997 556789999987 43
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHH-hhhcCCcceeeccHHHhhcc---cccCCccEEEEcCccccchh---hHHHHhhhc
Q 003260 357 KYPDIKVGLLSRFQSKAEKEEHLD-MIKHGHLNIIVGTHSLLGSR---VVYNNLGLLVVDEEQRFGVK---QKEKIASFK 429 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~-~l~~G~~dIIVgT~~~L~~~---l~~~~l~llVIDEaHr~g~~---~~e~l~~l~ 429 (835)
|.+++..++|.. .++..... .+..+..+|+|+|++.+... +.--++++|||||||++... ....+..+.
T Consensus 243 --p~l~v~~~~G~~--~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~ 318 (1033)
T PLN03142 243 --PVLRAVKFHGNP--EERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFS 318 (1033)
T ss_pred --CCCceEEEeCCH--HHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHHHHHhh
Confidence 357788888743 33332222 23456789999999988643 22246789999999998542 233344443
Q ss_pred CCceEEEeecCCChhhHHHHHh--cCCCcce-------------------------------------------ecCCCC
Q 003260 430 ISVDVLTLSATPIPRTLYLALT--GFRDASL-------------------------------------------ISTPPP 464 (835)
Q Consensus 430 ~~~~vL~lSATp~p~tl~~~~~--g~~d~s~-------------------------------------------I~~~p~ 464 (835)
....++|||||....+...+. .+..+.+ ...||.
T Consensus 319 -a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK 397 (1033)
T PLN03142 319 -TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPK 397 (1033)
T ss_pred -cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCc
Confidence 445688999997654322111 0000000 011111
Q ss_pred CccceeEEeccc-------------------------------------------------------------CHHHHHH
Q 003260 465 ERLPIKTHLSAF-------------------------------------------------------------SKEKVIS 483 (835)
Q Consensus 465 ~r~~v~~~~~~~-------------------------------------------------------------~~~~l~~ 483 (835)
....+....... ..-.+++
T Consensus 398 ~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLd 477 (1033)
T PLN03142 398 KETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLD 477 (1033)
T ss_pred eeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHH
Confidence 111010000000 0000111
Q ss_pred -HHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcC---CeeEEEEcCcCCcCCC
Q 003260 484 -AIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG---AIKILICTNIVESGLD 559 (835)
Q Consensus 484 -~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g---~~~ILVaT~iie~GID 559 (835)
.+......+.+|+||+.....++.+.+.|... ++.+..+||+++..+|+.+++.|.+. ...+|++|.+++.|||
T Consensus 478 kLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~--g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 478 KLLPKLKERDSRVLIFSQMTRLLDILEDYLMYR--GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHc--CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 11122245679999999888888888888766 88999999999999999999999753 3467899999999999
Q ss_pred CCCccEEEEecCCCCChhHHHHHhcccCCCCCc--eEEEEEecCCCcC
Q 003260 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE--AHAYLFYPDKSLL 605 (835)
Q Consensus 560 Ip~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~--G~ay~l~~~~~~~ 605 (835)
+..+++||++|.+ |++....|++||+.|.|+. -.+|.|++.+.+.
T Consensus 556 Lt~Ad~VIiyD~d-WNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 556 LATADIVILYDSD-WNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred hhhCCEEEEeCCC-CChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 9999999999998 8999999999999999955 5667788887653
No 107
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.89 E-value=1.3e-20 Score=224.11 Aligned_cols=123 Identities=19% Similarity=0.340 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcC
Q 003260 478 KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 557 (835)
Q Consensus 478 ~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~G 557 (835)
.+.+++.+.....++.+++|||++++.++.+++.|.+. ++.+..+||+++..+|.+++..|+.|+++|||||+++++|
T Consensus 428 i~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~--gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rG 505 (655)
T TIGR00631 428 VDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL--GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREG 505 (655)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh--ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCC
Confidence 35677777777788999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEecCCCC----ChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 558 LDIQNANTIIVQDVQQF----GLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 558 IDIp~v~~VIi~d~p~~----sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+|+|++++||+++++.| +..+|+||+||+||. ..|.|+++++..+
T Consensus 506 fDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~ 554 (655)
T TIGR00631 506 LDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKIT 554 (655)
T ss_pred eeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCC
Confidence 99999999999985433 567999999999998 6899999998653
No 108
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=1.8e-21 Score=231.39 Aligned_cols=319 Identities=19% Similarity=0.194 Sum_probs=220.1
Q ss_pred HHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHh
Q 003260 275 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSER 354 (835)
Q Consensus 275 ~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~ 354 (835)
...+...|++.|.-.--.+. ...|..+.||.|||++|.+|++.....|+.|.|++|+..||.|.++.+...
T Consensus 76 ~R~lgm~~ydVQliGgl~L~---------~G~IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l 146 (908)
T PRK13107 76 KRVFEMRHFDVQLLGGMVLD---------SNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPL 146 (908)
T ss_pred HHHhCCCcCchHHhcchHhc---------CCccccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 44567788999976643332 235999999999999999999887788888999999999999999999985
Q ss_pred hcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHh-h----cccc-------cCCccEEEEcCcccc-----
Q 003260 355 FSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-G----SRVV-------YNNLGLLVVDEEQRF----- 417 (835)
Q Consensus 355 f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L-~----~~l~-------~~~l~llVIDEaHr~----- 417 (835)
+.. .|++|+++.++.+..++...+ .+||++||++.| + +.+. .+.+.++||||+|.+
T Consensus 147 ~~~-lGlsv~~i~~~~~~~~r~~~Y------~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEA 219 (908)
T PRK13107 147 FEF-LGLTVGINVAGLGQQEKKAAY------NADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEA 219 (908)
T ss_pred HHh-cCCeEEEecCCCCHHHHHhcC------CCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccC
Confidence 554 599999999987765543322 489999999876 3 2221 256788999999941
Q ss_pred -------ch---------------hh------------------------------------HHHHh---h---------
Q 003260 418 -------GV---------------KQ------------------------------------KEKIA---S--------- 427 (835)
Q Consensus 418 -------g~---------------~~------------------------------------~e~l~---~--------- 427 (835)
|. .. .+.+. .
T Consensus 220 rtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~ 299 (908)
T PRK13107 220 RTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLY 299 (908)
T ss_pred CCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCccccc
Confidence 00 00 00000 0
Q ss_pred --------------------hcC---------------------------------------------------------
Q 003260 428 --------------------FKI--------------------------------------------------------- 430 (835)
Q Consensus 428 --------------------l~~--------------------------------------------------------- 430 (835)
+..
T Consensus 300 ~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qn 379 (908)
T PRK13107 300 SAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQN 379 (908)
T ss_pred CchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHH
Confidence 000
Q ss_pred ----CceEEEeecCCChhhHHHHHhcCCCcceecCCC---CCccceeEEecccC---HHHHHHHHHHHHhcCCeEEEEec
Q 003260 431 ----SVDVLTLSATPIPRTLYLALTGFRDASLISTPP---PERLPIKTHLSAFS---KEKVISAIKYELDRGGQVFYVLP 500 (835)
Q Consensus 431 ----~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p---~~r~~v~~~~~~~~---~~~l~~~i~~~l~~ggqvlVf~n 500 (835)
..++-+||+|....... +..+.+..++.+|+ ..|......+.... ...+++.+......|.+|||||+
T Consensus 380 fFr~Y~kL~GMTGTa~te~~E--f~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~ 457 (908)
T PRK13107 380 YFRQYEKLAGMTGTADTEAFE--FQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTV 457 (908)
T ss_pred HHHhhhHhhcccCCChHHHHH--HHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 01223344443222221 22233444555543 22333222222111 23456666666688999999999
Q ss_pred CccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCc-----------------
Q 003260 501 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA----------------- 563 (835)
Q Consensus 501 ~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v----------------- 563 (835)
+++..+.++..|... ++.+.++|+++.+.+++.+.+.|+.|. |+|||++++||+||.=-
T Consensus 458 sv~~se~ls~~L~~~--gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~ 533 (908)
T PRK13107 458 SIEQSELLARLMVKE--KIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQ 533 (908)
T ss_pred cHHHHHHHHHHHHHC--CCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHH
Confidence 999999999999998 899999999999999999999999998 99999999999999711
Q ss_pred --------------------cEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCC-CcCCHHHHHHHHHH
Q 003260 564 --------------------NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK-SLLSDQALERLAAL 616 (835)
Q Consensus 564 --------------------~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~-~~~~~~a~~rl~~i 616 (835)
=+||....+. |..-=.|.+||+||.|.+|.+-+|++-+ ++......+++..+
T Consensus 534 ~~~~~~~~~~~~~~V~~~GGL~VIgTerhe-SrRID~QLrGRaGRQGDPGss~f~lSlED~L~r~f~~~~~~~~ 606 (908)
T PRK13107 534 KAKIKADWQIRHDEVVAAGGLHILGTERHE-SRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMRIFASDRVSGM 606 (908)
T ss_pred HHHHHHHHHhhHHHHHHcCCCEEEecccCc-hHHHHhhhhcccccCCCCCceeEEEEeCcHHHHHhChHHHHHH
Confidence 1566555444 5555679999999999999999888844 33333344444433
No 109
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=6.7e-21 Score=226.73 Aligned_cols=123 Identities=15% Similarity=0.210 Sum_probs=101.1
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCC
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP 359 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~ 359 (835)
|.+||+|.++++.+.. +.+++.+++||+|||++|++|++..+..+..++||+||++||.|.++.+.. +..+.
T Consensus 91 ~~~tp~qvQ~I~~i~l-------~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~-L~k~l 162 (970)
T PRK12899 91 WDMVPYDVQILGAIAM-------HKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGS-VLRWL 162 (970)
T ss_pred CCCChHHHHHhhhhhc-------CCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHH-HHhhc
Confidence 3469999999998874 467999999999999999999997776677799999999999999999987 55556
Q ss_pred CcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHh-hcc-----ccc-------CCccEEEEcCccc
Q 003260 360 DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-GSR-----VVY-------NNLGLLVVDEEQR 416 (835)
Q Consensus 360 gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L-~~~-----l~~-------~~l~llVIDEaHr 416 (835)
|++++.+.|+.+..++...+ .+||+||||+.| ++. +.+ +.+.++||||||+
T Consensus 163 GLsV~~i~GG~~~~eq~~~y------~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 163 GLTTGVLVSGSPLEKRKEIY------QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred CCeEEEEeCCCCHHHHHHHc------CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 89999999998877654332 389999999988 432 222 2457999999996
No 110
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.87 E-value=2e-20 Score=207.55 Aligned_cols=165 Identities=19% Similarity=0.273 Sum_probs=132.5
Q ss_pred CceEEEeecCCChhhHHHHHhcCCCcceecCCCCCccc--eeEEecccCHHHHHHHHHHHHhcCCeEEEEecCccChHHH
Q 003260 431 SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP--IKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 508 (835)
Q Consensus 431 ~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~~--v~~~~~~~~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l 508 (835)
..|+|..||||.+..+..+...+-+ .+ +.|.+-.+ +...-..-..++++..|.....++.+++|-+-+++-+|.+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~vve--Qi-IRPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdL 462 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNVVE--QI-IRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDL 462 (663)
T ss_pred cCCEEEEECCCChHHHHhccCceeE--Ee-ecCCCCCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHH
Confidence 4789999999987665544311111 11 11222221 2222223345788999999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCC----ChhHHHHHhc
Q 003260 509 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF----GLAQLYQLRG 584 (835)
Q Consensus 509 ~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~----sl~~l~Qr~G 584 (835)
.++|.+. |+++.++|++...-+|.+++.+++.|+++|||+-+.+-.|+|+|.|..|.+.|++.- |-.+++|-+|
T Consensus 463 T~Yl~e~--gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIG 540 (663)
T COG0556 463 TEYLKEL--GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIG 540 (663)
T ss_pred HHHHHhc--CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999998743 4578999999
Q ss_pred ccCCCCCceEEEEEecC
Q 003260 585 RVGRADKEAHAYLFYPD 601 (835)
Q Consensus 585 RaGR~g~~G~ay~l~~~ 601 (835)
||.|. -.|.++++.+.
T Consensus 541 RAARN-~~GkvIlYAD~ 556 (663)
T COG0556 541 RAARN-VNGKVILYADK 556 (663)
T ss_pred HHhhc-cCCeEEEEchh
Confidence 99997 47999988764
No 111
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.85 E-value=3.6e-19 Score=212.90 Aligned_cols=122 Identities=20% Similarity=0.352 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcC
Q 003260 478 KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 557 (835)
Q Consensus 478 ~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~G 557 (835)
.+.+++.+......+.+++|||++...++.+++.|... ++++..+||+++..+|..++..|+.|+++|||||+++++|
T Consensus 432 ~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~--gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 432 VDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL--GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc--ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 35677777777788999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEecCCCC----ChhHHHHHhcccCCCCCceEEEEEecCC
Q 003260 558 LDIQNANTIIVQDVQQF----GLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 558 IDIp~v~~VIi~d~p~~----sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
+|+|++++||+++.+.| +..+|+||+||+||. ..|.|++|++..
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~ 557 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKI 557 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCC
Confidence 99999999999997543 568899999999996 789999999854
No 112
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.84 E-value=2.1e-20 Score=218.91 Aligned_cols=310 Identities=19% Similarity=0.218 Sum_probs=211.4
Q ss_pred CCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH-HHcCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003260 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC-VVSAGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 278 f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~-~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
+.-.+..+|.+|+..= .+ ..+.+.|...||+.|||+++-+.++. .+...+.++.+.|-...++.....+...+.
T Consensus 220 gi~~~fewq~ecls~~--~~---~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~ 294 (1008)
T KOG0950|consen 220 GILKLFEWQAECLSLP--RL---LERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSI 294 (1008)
T ss_pred hHHHHHHHHHHHhcch--hh---hcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhcc
Confidence 3346678898886421 11 13578999999999999999666554 456678899999999999999888887554
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHh-------hcccccCCccEEEEcCccccchhhHHHH----
Q 003260 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-------GSRVVYNNLGLLVVDEEQRFGVKQKEKI---- 425 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L-------~~~l~~~~l~llVIDEaHr~g~~~~e~l---- 425 (835)
.+ |+.|....|..++..+. ...++.|+|-+.- .+.-.+..+|+|||||-|.+|.+.+..+
T Consensus 295 ~~-G~~ve~y~g~~~p~~~~--------k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~ 365 (1008)
T KOG0950|consen 295 DL-GFPVEEYAGRFPPEKRR--------KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELL 365 (1008)
T ss_pred cc-CCcchhhcccCCCCCcc--------cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHH
Confidence 44 88887777655543322 1357889997532 2223456789999999999976554221
Q ss_pred ------hhhcCCceEEEeecCCChhhH-HHHHhc------CCCcceecCCCCC-------cccee--------EEecccC
Q 003260 426 ------ASFKISVDVLTLSATPIPRTL-YLALTG------FRDASLISTPPPE-------RLPIK--------THLSAFS 477 (835)
Q Consensus 426 ------~~l~~~~~vL~lSATp~p~tl-~~~~~g------~~d~s~I~~~p~~-------r~~v~--------~~~~~~~ 477 (835)
......+++|+||||.....+ ..++.. ++...+.+..-.+ +..+. ......+
T Consensus 366 l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~d 445 (1008)
T KOG0950|consen 366 LAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDED 445 (1008)
T ss_pred HHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCC
Confidence 112345789999999754332 222111 1111111100000 00000 0011112
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCC------------------------------------CeE
Q 003260 478 KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG------------------------------------VDI 521 (835)
Q Consensus 478 ~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~------------------------------------~~v 521 (835)
++.+...+.+.+.++.++++||+++..|+.++..+...+|. +.+
T Consensus 446 pD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~Gv 525 (1008)
T KOG0950|consen 446 PDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGV 525 (1008)
T ss_pred CcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccc
Confidence 23445555566677788999999999999887665443321 378
Q ss_pred EEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCC-----ChhHHHHHhcccCCCC--CceE
Q 003260 522 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF-----GLAQLYQLRGRVGRAD--KEAH 594 (835)
Q Consensus 522 ~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~-----sl~~l~Qr~GRaGR~g--~~G~ 594 (835)
+++|++++.++|+.+...|++|.+.|++||+.++.|++.| ++.||+ .+|.+ +.-+|.|++|||||.| ..|.
T Consensus 526 AyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLP-ArRVIi-raP~~g~~~l~~~~YkQM~GRAGR~gidT~Gd 603 (1008)
T KOG0950|consen 526 AYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLP-ARRVII-RAPYVGREFLTRLEYKQMVGRAGRTGIDTLGD 603 (1008)
T ss_pred eecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCC-cceeEE-eCCccccchhhhhhHHhhhhhhhhcccccCcc
Confidence 9999999999999999999999999999999999999999 666765 33333 4568999999999998 5699
Q ss_pred EEEEecCCC
Q 003260 595 AYLFYPDKS 603 (835)
Q Consensus 595 ay~l~~~~~ 603 (835)
+++++.+.+
T Consensus 604 siLI~k~~e 612 (1008)
T KOG0950|consen 604 SILIIKSSE 612 (1008)
T ss_pred eEEEeeccc
Confidence 999998765
No 113
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.84 E-value=1.4e-19 Score=185.57 Aligned_cols=181 Identities=27% Similarity=0.221 Sum_probs=138.3
Q ss_pred CCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-----CCEEEEEcc
Q 003260 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-----GKQAMVLAP 339 (835)
Q Consensus 266 ~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-----g~qvlVLvP 339 (835)
+.++ +++.+.+.+...|+++|.+|++.+.+ ++++++++|||+|||++++.+++..+.. +++++|++|
T Consensus 5 ~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~-------~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p 77 (203)
T cd00268 5 GLSPELLRGIYALGFEKPTPIQARAIPPLLS-------GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAP 77 (203)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc-------CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcC
Confidence 3343 67778776666799999999999864 5789999999999999999888876643 468999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCc
Q 003260 340 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEE 414 (835)
Q Consensus 340 tr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEa 414 (835)
+++|+.|+.+.+.. +....++.+..++++.+..+....+ . ++++|+|+||..|.. ...+.+++++|+||+
T Consensus 78 ~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~ 152 (203)
T cd00268 78 TRELALQIAEVARK-LGKHTNLKVVVIYGGTSIDKQIRKL---K-RGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEA 152 (203)
T ss_pred CHHHHHHHHHHHHH-HhccCCceEEEEECCCCHHHHHHHh---c-CCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeCh
Confidence 99999999999987 4444478888898887665543333 2 568999999987643 345678999999999
Q ss_pred cccchh-----hHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcce
Q 003260 415 QRFGVK-----QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 458 (835)
Q Consensus 415 Hr~g~~-----~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~ 458 (835)
|.+... ....+..+..+.+++++|||++++...+......++..
T Consensus 153 h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~ 201 (203)
T cd00268 153 DRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVR 201 (203)
T ss_pred HHhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEE
Confidence 986422 22334455668999999999998777666666555443
No 114
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=7.3e-19 Score=209.40 Aligned_cols=304 Identities=18% Similarity=0.257 Sum_probs=209.4
Q ss_pred HhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhh
Q 003260 276 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 276 ~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f 355 (835)
...+..|.+.|.-.--.+. ...|..+.||+|||+++.+|++.....|++|.|++|+..||.|+++.+...|
T Consensus 77 R~lGm~~ydVQliGg~~Lh---------~G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 77 RVMGMRHFDVQLIGGMTLH---------EGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred HHhCCCcchhHHHhhhHhc---------cCccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 3456788899987643332 2358999999999999999999888899999999999999999999999877
Q ss_pred cCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHh-----hccccc-------CCccEEEEcCcccc------
Q 003260 356 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRVVY-------NNLGLLVVDEEQRF------ 417 (835)
Q Consensus 356 ~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L-----~~~l~~-------~~l~llVIDEaHr~------ 417 (835)
..+ |++|+++.+..+..++...+. +||++||+..+ .+.+.+ ++++++||||+|.+
T Consensus 148 ~~l-Gl~v~~i~~~~~~~err~~Y~------~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEAr 220 (913)
T PRK13103 148 EFL-GLSVGIVTPFQPPEEKRAAYA------ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEAR 220 (913)
T ss_pred ccc-CCEEEEECCCCCHHHHHHHhc------CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccC
Confidence 665 899999999888888776663 89999999875 666666 88999999999942
Q ss_pred ------ch-----h-------hHHHH------------------------------------------------------
Q 003260 418 ------GV-----K-------QKEKI------------------------------------------------------ 425 (835)
Q Consensus 418 ------g~-----~-------~~e~l------------------------------------------------------ 425 (835)
|. . ....+
T Consensus 221 tPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~ 300 (913)
T PRK13103 221 TPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYS 300 (913)
T ss_pred CceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccC
Confidence 00 0 00000
Q ss_pred --------------hhh---------------------------------------------------------------
Q 003260 426 --------------ASF--------------------------------------------------------------- 428 (835)
Q Consensus 426 --------------~~l--------------------------------------------------------------- 428 (835)
...
T Consensus 301 ~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qnf 380 (913)
T PRK13103 301 AHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNY 380 (913)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHH
Confidence 000
Q ss_pred -cCCceEEEeecCCChhhHHHHHhcCCCcceecCCCC---CccceeEEecccC---HHHHHHHHHHHHhcCCeEEEEecC
Q 003260 429 -KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP---ERLPIKTHLSAFS---KEKVISAIKYELDRGGQVFYVLPR 501 (835)
Q Consensus 429 -~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~---~r~~v~~~~~~~~---~~~l~~~i~~~l~~ggqvlVf~n~ 501 (835)
+...++-+||+|....... +..+.+..++.+|+. .|......+.... ...+++.+......|.+|||.+.+
T Consensus 381 Fr~Y~kLsGMTGTa~te~~E--f~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~S 458 (913)
T PRK13103 381 FRLYNKLSGMTGTADTEAFE--FRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTAT 458 (913)
T ss_pred HHhcchhccCCCCCHHHHHH--HHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 0012233344444222222 222334445555432 2332222222221 234555566666789999999999
Q ss_pred ccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcC-CeeEEEEcCcCCcCCCCC-------------------
Q 003260 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIKILICTNIVESGLDIQ------------------- 561 (835)
Q Consensus 502 v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g-~~~ILVaT~iie~GIDIp------------------- 561 (835)
++..+.+++.|... ++...++++.-...+-+-|- ..| .-.|.|||++++||.||.
T Consensus 459 Ve~SE~ls~~L~~~--gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~ 533 (913)
T PRK13103 459 IETSEHMSNLLKKE--GIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQ 533 (913)
T ss_pred HHHHHHHHHHHHHc--CCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHH
Confidence 99999999999998 77776777764433333222 233 456999999999999994
Q ss_pred ------------------CccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 562 ------------------NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 562 ------------------~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+==+||....+. |..--.|.+||+||.|.+|.+-+|++-++
T Consensus 534 ~~~~~~~~~~~~e~V~e~GGLhVIgTerhe-SrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 534 IAQIKADWQKRHQQVIEAGGLHVIASERHE-SRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHHHHHHHhHHHHHHHcCCCEEEeeccCc-hHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 112566555554 55666899999999999999988887543
No 115
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.83 E-value=1.5e-19 Score=179.29 Aligned_cols=149 Identities=26% Similarity=0.369 Sum_probs=116.2
Q ss_pred CHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCC--EEEEEcccHHHHHHHHHHHHHhhcCCCC
Q 003260 283 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK--QAMVLAPTIVLAKQHFDVVSERFSKYPD 360 (835)
Q Consensus 283 tp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~--qvlVLvPtr~LA~Q~~~~~~~~f~~~~g 360 (835)
||.|.++++.+.+ +++++++||||+|||++++.+++..+..++ ++++++|+++|+.|+++++...+.. ++
T Consensus 1 t~~Q~~~~~~i~~-------~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~ 72 (169)
T PF00270_consen 1 TPLQQEAIEAIIS-------GKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSN-TN 72 (169)
T ss_dssp -HHHHHHHHHHHT-------TSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTT-TT
T ss_pred CHHHHHHHHHHHc-------CCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccc-cc
Confidence 7999999999874 478999999999999999999998876655 9999999999999999999986655 56
Q ss_pred cEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc-----ccCCccEEEEcCccccchh-hH----HHHhhh--
Q 003260 361 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-----VYNNLGLLVVDEEQRFGVK-QK----EKIASF-- 428 (835)
Q Consensus 361 i~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l-----~~~~l~llVIDEaHr~g~~-~~----e~l~~l-- 428 (835)
+++..++++.+...... ..+ .++++|+|+||+.|.+.+ .+.++++||+||+|.+... .. ..+..+
T Consensus 73 ~~~~~~~~~~~~~~~~~--~~~-~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~ 149 (169)
T PF00270_consen 73 VRVVLLHGGQSISEDQR--EVL-SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR 149 (169)
T ss_dssp SSEEEESTTSCHHHHHH--HHH-HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT
T ss_pred ccccccccccccccccc--ccc-cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcC
Confidence 88999988776442221 112 456999999999886532 4566999999999998652 12 222222
Q ss_pred cCCceEEEeecCCC
Q 003260 429 KISVDVLTLSATPI 442 (835)
Q Consensus 429 ~~~~~vL~lSATp~ 442 (835)
..+.+++++|||+.
T Consensus 150 ~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 150 FKNIQIILLSATLP 163 (169)
T ss_dssp TTTSEEEEEESSST
T ss_pred CCCCcEEEEeeCCC
Confidence 23689999999997
No 116
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=4.8e-18 Score=198.21 Aligned_cols=307 Identities=18% Similarity=0.220 Sum_probs=213.5
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHH
Q 003260 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 272 ~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~ 351 (835)
+.........|++.|.-+.-.++. ..|..+.||+|||+++.+|+......|++|.|++|+..||.|.++.+
T Consensus 69 Ea~~R~lg~r~ydvQlig~l~Ll~---------G~VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m 139 (764)
T PRK12326 69 EAAERTLGLRPFDVQLLGALRLLA---------GDVIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWM 139 (764)
T ss_pred HHHHHHcCCCcchHHHHHHHHHhC---------CCcccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHH
Confidence 344556778899999998776653 24889999999999999999888889999999999999999999999
Q ss_pred HHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHh-----hccc-------ccCCccEEEEcCcccc--
Q 003260 352 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRV-------VYNNLGLLVVDEEQRF-- 417 (835)
Q Consensus 352 ~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L-----~~~l-------~~~~l~llVIDEaHr~-- 417 (835)
...|..+ |++|+++.+..+..++...+ .+||++||..-+ .+.+ ..+.+.+.||||+|.+
T Consensus 140 ~~ly~~L-GLsvg~i~~~~~~~err~aY------~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLI 212 (764)
T PRK12326 140 GPLYEAL-GLTVGWITEESTPEERRAAY------ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLV 212 (764)
T ss_pred HHHHHhc-CCEEEEECCCCCHHHHHHHH------cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhee
Confidence 9877665 89999999988888777665 389999998643 3322 2356789999999921
Q ss_pred -------------------------------------------------chhhHHH-----------------------H
Q 003260 418 -------------------------------------------------GVKQKEK-----------------------I 425 (835)
Q Consensus 418 -------------------------------------------------g~~~~e~-----------------------l 425 (835)
|....+. +
T Consensus 213 DeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL 292 (764)
T PRK12326 213 DEALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVAL 292 (764)
T ss_pred ccccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHH
Confidence 0000000 0
Q ss_pred hh---h-------------------------------------------------------------cCCceEEEeecCC
Q 003260 426 AS---F-------------------------------------------------------------KISVDVLTLSATP 441 (835)
Q Consensus 426 ~~---l-------------------------------------------------------------~~~~~vL~lSATp 441 (835)
.. + +...++-+||+|.
T Consensus 293 ~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa 372 (764)
T PRK12326 293 HAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTA 372 (764)
T ss_pred HHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCC
Confidence 00 0 0012345566665
Q ss_pred ChhhHHHHHhcCCCcceecCCCC---CccceeEEeccc---CHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhh
Q 003260 442 IPRTLYLALTGFRDASLISTPPP---ERLPIKTHLSAF---SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQA 515 (835)
Q Consensus 442 ~p~tl~~~~~g~~d~s~I~~~p~---~r~~v~~~~~~~---~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~ 515 (835)
...... +..+.+..++.+|+. .|......+... ....+++.+.+....|.+|||.+.+++..+.++..|.+.
T Consensus 373 ~t~~~E--f~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~ 450 (764)
T PRK12326 373 VAAGEQ--LRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAA 450 (764)
T ss_pred hhHHHH--HHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhC
Confidence 433332 222334445555433 222211122111 123455666666688999999999999999999999998
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHHHhhcC-CeeEEEEcCcCCcCCCCCC---------------ccEEEEecCCCCChhHH
Q 003260 516 FPGVDIAIAHGQQYSRQLEETMEKFAQG-AIKILICTNIVESGLDIQN---------------ANTIIVQDVQQFGLAQL 579 (835)
Q Consensus 516 ~p~~~v~~lhg~m~~~ere~vl~~F~~g-~~~ILVaT~iie~GIDIp~---------------v~~VIi~d~p~~sl~~l 579 (835)
+++..++++.-...+- .++.. .| .-.|.|||++++||.||.- ==+||....+. |..--
T Consensus 451 --gI~h~vLNAk~~~~EA-~IIa~--AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerhe-SrRID 524 (764)
T PRK12326 451 --GVPAVVLNAKNDAEEA-RIIAE--AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHR-SERLD 524 (764)
T ss_pred --CCcceeeccCchHhHH-HHHHh--cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCc-hHHHH
Confidence 8888888887443332 22222 23 3469999999999999872 12677666655 66677
Q ss_pred HHHhcccCCCCCceEEEEEecCC
Q 003260 580 YQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 580 ~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
.|.+||+||.|.+|.+-+|++-+
T Consensus 525 ~QLrGRaGRQGDpGss~f~lSle 547 (764)
T PRK12326 525 NQLRGRAGRQGDPGSSVFFVSLE 547 (764)
T ss_pred HHHhcccccCCCCCceeEEEEcc
Confidence 89999999999999999988744
No 117
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.82 E-value=8.3e-19 Score=210.49 Aligned_cols=296 Identities=18% Similarity=0.150 Sum_probs=187.8
Q ss_pred CCCHhHHHHHHHHHHhhhcCC---CCCcEEEEccCCCcccHHHHHHHHHHH--cCCCEEEEEcccHHHHHHHHHHHHHhh
Q 003260 281 EPTPDQKKAFLDVERDLTERE---TPMDRLICGDVGFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~---~~~d~Ll~a~TGsGKT~val~a~l~~l--~~g~qvlVLvPtr~LA~Q~~~~~~~~f 355 (835)
-++++|..|+..+.+.+.... ..+..+|+.+||||||.+++..+...+ ....+|+||||+++|..|+.+.|.. +
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~-~ 316 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQS-L 316 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHh-h
Confidence 378999999999988765421 235689999999999999876665543 3457899999999999999999987 3
Q ss_pred cCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc-----ccC--Cc-cEEEEcCccccchhhH-HHHh
Q 003260 356 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-----VYN--NL-GLLVVDEEQRFGVKQK-EKIA 426 (835)
Q Consensus 356 ~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l-----~~~--~l-~llVIDEaHr~g~~~~-e~l~ 426 (835)
+.. .+ .+..+... ....+.+....|+|+|.+.+.+.+ .+. .- .+||+|||||..+... ..+.
T Consensus 317 ~~~---~~---~~~~s~~~---L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~ 387 (667)
T TIGR00348 317 QKD---CA---ERIESIAE---LKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLK 387 (667)
T ss_pred CCC---CC---cccCCHHH---HHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHHH
Confidence 311 01 11112211 223344455789999999886421 111 11 2899999999876543 4455
Q ss_pred hhcCCceEEEeecCCChh----hHHHHHhcCCCcceecCC------CCCccceeE-------Ee----------------
Q 003260 427 SFKISVDVLTLSATPIPR----TLYLALTGFRDASLISTP------PPERLPIKT-------HL---------------- 473 (835)
Q Consensus 427 ~l~~~~~vL~lSATp~p~----tl~~~~~g~~d~s~I~~~------p~~r~~v~~-------~~---------------- 473 (835)
...++...++|||||... +.......+.+. +.... ..-..|+.. .+
T Consensus 388 ~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~-i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~ 466 (667)
T TIGR00348 388 KALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRY-LHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELL 466 (667)
T ss_pred hhCCCCcEEEEeCCCcccccccccccccCCCCCe-EEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhh
Confidence 556778999999999642 211111000010 00000 000001000 00
Q ss_pred ----ccc-----------------C---HHHHHHHHHHHH-----hcCCeEEEEecCccChHHHHHHHHhhCCCC---eE
Q 003260 474 ----SAF-----------------S---KEKVISAIKYEL-----DRGGQVFYVLPRIKGLEEPMDFLQQAFPGV---DI 521 (835)
Q Consensus 474 ----~~~-----------------~---~~~l~~~i~~~l-----~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~---~v 521 (835)
... + ...+...+.+.. ..+++.+|||.++..|..+.+.|.+.+|.. ..
T Consensus 467 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~ 546 (667)
T TIGR00348 467 PERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASA 546 (667)
T ss_pred hccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCee
Confidence 000 0 001111111111 124899999999999999999998877653 45
Q ss_pred EEEeCCCCHH---------------------HHHHHHHHhhc-CCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHH
Q 003260 522 AIAHGQQYSR---------------------QLEETMEKFAQ-GAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQL 579 (835)
Q Consensus 522 ~~lhg~m~~~---------------------ere~vl~~F~~-g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l 579 (835)
+++++..+.. ..+.++++|++ +.++|||+++++.+|+|.|.++++++..+-+ + ..+
T Consensus 547 vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk-~-h~L 624 (667)
T TIGR00348 547 IVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLK-Y-HGL 624 (667)
T ss_pred EEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccc-c-cHH
Confidence 5566554322 22478889976 6789999999999999999999998766654 3 458
Q ss_pred HHHhcccCCC
Q 003260 580 YQLRGRVGRA 589 (835)
Q Consensus 580 ~Qr~GRaGR~ 589 (835)
+|.+||+.|.
T Consensus 625 lQai~R~nR~ 634 (667)
T TIGR00348 625 LQAIARTNRI 634 (667)
T ss_pred HHHHHHhccc
Confidence 9999999994
No 118
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.82 E-value=1.4e-19 Score=195.34 Aligned_cols=267 Identities=21% Similarity=0.258 Sum_probs=181.7
Q ss_pred cCCCEEEEEcccHHHHHHHHHHHHHhhcC---CCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----
Q 003260 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSK---YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR----- 400 (835)
Q Consensus 329 ~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~---~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~----- 400 (835)
.+.++++|+-|.++||.|.++.+.+ |.. .|.++-.++.++.-. +++...+.+| .+|+||||+++...
T Consensus 284 pNap~avivepsrelaEqt~N~i~~-Fk~h~~np~~r~lLmiggv~~---r~Q~~ql~~g-~~ivvGtpgRl~~~is~g~ 358 (725)
T KOG0349|consen 284 PNAPEAVIVEPSRELAEQTHNQIEE-FKMHTSNPEVRSLLMIGGVLK---RTQCKQLKDG-THIVVGTPGRLLQPISKGL 358 (725)
T ss_pred CCCcceeEecCcHHHHHHHHhhHHH-HHhhcCChhhhhhhhhhhHHh---HHHHHHhhcC-ceeeecCchhhhhhhhccc
Confidence 4467999999999999999997665 432 344555566665433 3455666778 99999999988753
Q ss_pred cccCCccEEEEcCccccch-hhHHHHhh-------h---cCCceEEEeecCCCh-hhHHHHHhcCCCcceec--------
Q 003260 401 VVYNNLGLLVVDEEQRFGV-KQKEKIAS-------F---KISVDVLTLSATPIP-RTLYLALTGFRDASLIS-------- 460 (835)
Q Consensus 401 l~~~~l~llVIDEaHr~g~-~~~e~l~~-------l---~~~~~vL~lSATp~p-~tl~~~~~g~~d~s~I~-------- 460 (835)
+.+..+.++|+||++-+.. .-.+.|-+ + ....+.+.+|||... +...+...-+.-+..+.
T Consensus 359 ~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vp 438 (725)
T KOG0349|consen 359 VTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVP 438 (725)
T ss_pred eeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccc
Confidence 3567788999999998632 11222222 2 235778899999631 11001100000000000
Q ss_pred ----------CCCCC------ccceeE-------E-----ecccCHHHHHHHHHHH-----Hh--cCCeEEEEecCccCh
Q 003260 461 ----------TPPPE------RLPIKT-------H-----LSAFSKEKVISAIKYE-----LD--RGGQVFYVLPRIKGL 505 (835)
Q Consensus 461 ----------~~p~~------r~~v~~-------~-----~~~~~~~~l~~~i~~~-----l~--~ggqvlVf~n~v~~~ 505 (835)
-|... +.++.+ + .++.........+.-+ +. .-.+.+|||.+..+|
T Consensus 439 etvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dc 518 (725)
T KOG0349|consen 439 ETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDC 518 (725)
T ss_pred hhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccc
Confidence 00000 000000 0 0111111111111111 11 235899999999999
Q ss_pred HHHHHHHHhhCC-CCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhc
Q 003260 506 EEPMDFLQQAFP-GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRG 584 (835)
Q Consensus 506 e~l~~~L~~~~p-~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~G 584 (835)
+.+.+++.+... .+.++++||+..+.+|.+-++.|+.+..+.||||+++++|+||.++.+||+.-.|. .-..|+||+|
T Consensus 519 DnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd-~k~nyvhrig 597 (725)
T KOG0349|consen 519 DNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPD-DKTNYVHRIG 597 (725)
T ss_pred hHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCc-ccchhhhhhh
Confidence 999999988742 47899999999999999999999999999999999999999999999999999997 7889999999
Q ss_pred ccCCCCCceEEEEEecC
Q 003260 585 RVGRADKEAHAYLFYPD 601 (835)
Q Consensus 585 RaGR~g~~G~ay~l~~~ 601 (835)
|+||+.+-|.++.++..
T Consensus 598 rvgraermglaislvat 614 (725)
T KOG0349|consen 598 RVGRAERMGLAISLVAT 614 (725)
T ss_pred ccchhhhcceeEEEeec
Confidence 99999999999988753
No 119
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.81 E-value=2.7e-18 Score=202.14 Aligned_cols=284 Identities=23% Similarity=0.339 Sum_probs=207.4
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~ 349 (835)
+.+-|.+..++.|...|+-....+.+ +...-+.||||.|||.--+...+.....|+++++++||+.|+.|.++
T Consensus 71 ~~~fF~k~~G~~~ws~QR~WakR~~r-------g~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~ 143 (1187)
T COG1110 71 FEEFFKKATGFRPWSAQRVWAKRLVR-------GKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYE 143 (1187)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHc-------CCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHH
Confidence 44667888899999999998888875 56789999999999988666666666778999999999999999999
Q ss_pred HHHHhhcCC--CCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccc-c--CCccEEEEcCcccc-------
Q 003260 350 VVSERFSKY--PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV-Y--NNLGLLVVDEEQRF------- 417 (835)
Q Consensus 350 ~~~~~f~~~--~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~-~--~~l~llVIDEaHr~------- 417 (835)
++.+..... .++.+. +|+..+..+++..++.+.+|..||+|+|.+.|.+... + .++++|++|.+|.+
T Consensus 144 kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNv 222 (1187)
T COG1110 144 RLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKNV 222 (1187)
T ss_pred HHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhccccH
Confidence 998743222 134444 7888889999999999999999999999998876432 2 46899999999942
Q ss_pred -------chhhH------H---------------HHh------------hhcCCceEEEeecCCChhhH----HHHHhcC
Q 003260 418 -------GVKQK------E---------------KIA------------SFKISVDVLTLSATPIPRTL----YLALTGF 453 (835)
Q Consensus 418 -------g~~~~------e---------------~l~------------~l~~~~~vL~lSATp~p~tl----~~~~~g~ 453 (835)
|+..- + .+. .......++..|||..|+.. ...+.++
T Consensus 223 DriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF 302 (1187)
T COG1110 223 DRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF 302 (1187)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC
Confidence 32210 0 000 01234678999999877652 2223332
Q ss_pred CCcceecCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecC---ccChHHHHHHHHhhCCCCeEEEEeCCCCH
Q 003260 454 RDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR---IKGLEEPMDFLQQAFPGVDIAIAHGQQYS 530 (835)
Q Consensus 454 ~d~s~I~~~p~~r~~v~~~~~~~~~~~l~~~i~~~l~~ggqvlVf~n~---v~~~e~l~~~L~~~~p~~~v~~lhg~m~~ 530 (835)
.-.+ ....-|.-+..++.....+.+.+.+.+ +.. -.+||++. ++.++++++.|+.. |+++..+|+.
T Consensus 303 evG~---~~~~LRNIvD~y~~~~~~e~~~elvk~-lG~--GgLIfV~~d~G~e~aeel~e~Lr~~--Gi~a~~~~a~--- 371 (1187)
T COG1110 303 EVGS---GGEGLRNIVDIYVESESLEKVVELVKK-LGD--GGLIFVPIDYGREKAEELAEYLRSH--GINAELIHAE--- 371 (1187)
T ss_pred ccCc---cchhhhheeeeeccCccHHHHHHHHHH-hCC--CeEEEEEcHHhHHHHHHHHHHHHhc--CceEEEeecc---
Confidence 2111 111113334445444334444444333 433 45888888 77799999999998 9999999985
Q ss_pred HHHHHHHHHhhcCCeeEEEEcC----cCCcCCCCC-CccEEEEecCCCC
Q 003260 531 RQLEETMEKFAQGAIKILICTN----IVESGLDIQ-NANTIIVQDVQQF 574 (835)
Q Consensus 531 ~ere~vl~~F~~g~~~ILVaT~----iie~GIDIp-~v~~VIi~d~p~~ 574 (835)
.++.++.|..|++++||++. ++-+|||+| .++++|.++.|++
T Consensus 372 --~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~ 418 (1187)
T COG1110 372 --KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKF 418 (1187)
T ss_pred --chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCce
Confidence 26789999999999999864 789999999 4789999999953
No 120
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=3.4e-18 Score=204.32 Aligned_cols=119 Identities=16% Similarity=0.204 Sum_probs=101.6
Q ss_pred HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCC
Q 003260 481 VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560 (835)
Q Consensus 481 l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDI 560 (835)
+++.+......+.++||||++++.++.+++.|... ++.+.++|+ .+.+|+..+..|..+...|+|||++++||+||
T Consensus 587 li~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~--gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDI 662 (1025)
T PRK12900 587 IVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAK--RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDI 662 (1025)
T ss_pred HHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHc--CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCc
Confidence 44444444457889999999999999999999998 889999997 47899999999999999999999999999999
Q ss_pred C---CccEE-----EEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003260 561 Q---NANTI-----IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 561 p---~v~~V-----Ii~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
+ +|..+ |....|. +...+.|++||+||.|.+|.+.+|++.++.
T Consensus 663 kl~~~V~~vGGL~VIgterhe-s~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 663 KLGEGVRELGGLFILGSERHE-SRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CCccchhhhCCceeeCCCCCc-hHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 9 55433 6666665 777899999999999999999999987643
No 121
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.81 E-value=7.7e-19 Score=204.30 Aligned_cols=291 Identities=20% Similarity=0.243 Sum_probs=195.9
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCC--CEEEEEcccHHHHHHHHHHHHHhhcC
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g--~qvlVLvPtr~LA~Q~~~~~~~~f~~ 357 (835)
..++++|..||..+.+.... +++ .+|+++.||+|||.+|+..+...+..+ ++||+|+-+++|..|.+..|.. |-.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~-g~~-raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~-~~P 240 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSK-GQN-RALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFED-FLP 240 (875)
T ss_pred ccchHHHHHHHHHHHHHHhc-CCc-eEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHH-hCC
Confidence 47899999999999998854 333 489999999999999988777766554 7999999999999999999886 433
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc----------cccCCccEEEEcCccccchhhHHHHhh
Q 003260 358 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR----------VVYNNLGLLVVDEEQRFGVKQKEKIAS 427 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~----------l~~~~l~llVIDEaHr~g~~~~e~l~~ 427 (835)
+ +-.+..+.+... .+.++|.++|...+... +....++|||||||||-.+..++.+..
T Consensus 241 ~-~~~~n~i~~~~~------------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~~I~d 307 (875)
T COG4096 241 F-GTKMNKIEDKKG------------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWSSILD 307 (875)
T ss_pred C-ccceeeeecccC------------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhHHHHH
Confidence 3 233333333211 12478999999877532 223458999999999987766655555
Q ss_pred hcCCceEEEeecCCCh----hhHHHH----------HhcCCCc-----ceecCC----CCCccc-------------e--
Q 003260 428 FKISVDVLTLSATPIP----RTLYLA----------LTGFRDA-----SLISTP----PPERLP-------------I-- 469 (835)
Q Consensus 428 l~~~~~vL~lSATp~p----~tl~~~----------~~g~~d~-----s~I~~~----p~~r~~-------------v-- 469 (835)
+..... +++||||.. ++...+ ..+..|. .++.++ -.+..+ +
T Consensus 308 YFdA~~-~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~ 386 (875)
T COG4096 308 YFDAAT-QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDE 386 (875)
T ss_pred HHHHHH-HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCc
Confidence 433333 455999854 222222 0111111 111110 000000 0
Q ss_pred -----------eEEecccCHHHHHHHHHHHHhc------CCeEEEEecCccChHHHHHHHHhhCCCCe---EEEEeCCCC
Q 003260 470 -----------KTHLSAFSKEKVISAIKYELDR------GGQVFYVLPRIKGLEEPMDFLQQAFPGVD---IAIAHGQQY 529 (835)
Q Consensus 470 -----------~~~~~~~~~~~l~~~i~~~l~~------ggqvlVf~n~v~~~e~l~~~L~~~~p~~~---v~~lhg~m~ 529 (835)
.+.+.....+.+...+...+.+ -+++||||.+..+++.+.+.|...+|+.+ +..+.|+-.
T Consensus 387 dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~ 466 (875)
T COG4096 387 DDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE 466 (875)
T ss_pred ccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch
Confidence 0011112223444555555555 36899999999999999999999998754 666777744
Q ss_pred HHHHHHHHHHhhc--CCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCC
Q 003260 530 SRQLEETMEKFAQ--GAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 590 (835)
Q Consensus 530 ~~ere~vl~~F~~--g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g 590 (835)
.. +..+..|.. .-.+|.|+.+++.+|||+|.|..++.+..-+ |..-|.|++||.-|..
T Consensus 467 ~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~Vr-SktkF~QMvGRGTRl~ 526 (875)
T COG4096 467 QA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVR-SKTKFKQMVGRGTRLC 526 (875)
T ss_pred hh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhh-hHHHHHHHhcCccccC
Confidence 32 344555654 3467999999999999999988887666655 8999999999999964
No 122
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.79 E-value=3.5e-17 Score=201.92 Aligned_cols=317 Identities=18% Similarity=0.224 Sum_probs=200.6
Q ss_pred CCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHH-HHHhhc
Q 003260 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV-VSERFS 356 (835)
Q Consensus 278 f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~-~~~~f~ 356 (835)
..|+++|.|.+.++.+.+.+.+ +.++++.||||+|||.+|++|++.....+++|+|.+||++|+.|++.. +.. +.
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~---~~~~~~eA~TG~GKT~ayLlp~~~~~~~~~~vvi~t~t~~Lq~Ql~~~~~~~-l~ 317 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTH---SEKSLIEAPTGTGKTLGYLLPALYYAITEKPVVISTNTKVLQSQLLEKDIPL-LN 317 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhcc---CCcEEEECCCCCchhHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHHHH-HH
Confidence 5789999999999988887743 578999999999999999999987666778999999999999998763 332 33
Q ss_pred CCC--CcEEEEecCCCCHH----------------H-------------------H---------HHHHHhhh-------
Q 003260 357 KYP--DIKVGLLSRFQSKA----------------E-------------------K---------EEHLDMIK------- 383 (835)
Q Consensus 357 ~~~--gi~V~~l~g~~s~~----------------e-------------------~---------~~~l~~l~------- 383 (835)
... .++++++.|....- + . ...|..+.
T Consensus 318 ~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~~i~~~~~l~~ 397 (850)
T TIGR01407 318 EILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFAQVRHDGNLSK 397 (850)
T ss_pred HHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHHHhhcCCCCCC
Confidence 221 26676666543210 0 0 00011111
Q ss_pred ----------------cCCcceeeccHHHhhccc-----ccCCccEEEEcCccccc--------hh--------h-----
Q 003260 384 ----------------HGHLNIIVGTHSLLGSRV-----VYNNLGLLVVDEEQRFG--------VK--------Q----- 421 (835)
Q Consensus 384 ----------------~G~~dIIVgT~~~L~~~l-----~~~~l~llVIDEaHr~g--------~~--------~----- 421 (835)
...+||||+.|..|..++ .+.+..++||||||++. .. .
T Consensus 398 ~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~~~~~~~l~~l~ 477 (850)
T TIGR01407 398 KDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEELDYADIKYQIDLIG 477 (850)
T ss_pred CCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcceeCHHHHHHHHHHHH
Confidence 123689999999887643 24566899999999631 00 0
Q ss_pred --------------------H------------------------------------HHH----hh--------------
Q 003260 422 --------------------K------------------------------------EKI----AS-------------- 427 (835)
Q Consensus 422 --------------------~------------------------------------e~l----~~-------------- 427 (835)
. ..+ ..
T Consensus 478 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 557 (850)
T TIGR01407 478 KGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKDDFKNIEQSLKE 557 (850)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 000 00
Q ss_pred ------------------h----------------cCCceEEEeecCCCh---hhHHHHHhcCCCcceecC-CCCCc--c
Q 003260 428 ------------------F----------------KISVDVLTLSATPIP---RTLYLALTGFRDASLIST-PPPER--L 467 (835)
Q Consensus 428 ------------------l----------------~~~~~vL~lSATp~p---~tl~~~~~g~~d~s~I~~-~p~~r--~ 467 (835)
+ .....+|++|||..+ ........|+.+...... +++-. .
T Consensus 558 ~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~ 637 (850)
T TIGR01407 558 GHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAE 637 (850)
T ss_pred CCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHH
Confidence 0 012357889999863 333334456544332222 11111 1
Q ss_pred ceeEEe----c---ccCHH----HHHHHHHHHHh-cCCeEEEEecCccChHHHHHHHHhhC--CCCeEEEEeCCCCHHHH
Q 003260 468 PIKTHL----S---AFSKE----KVISAIKYELD-RGGQVFYVLPRIKGLEEPMDFLQQAF--PGVDIAIAHGQQYSRQL 533 (835)
Q Consensus 468 ~v~~~~----~---~~~~~----~l~~~i~~~l~-~ggqvlVf~n~v~~~e~l~~~L~~~~--p~~~v~~lhg~m~~~er 533 (835)
....++ . ..+.+ .+.+.|.+.+. .+|+++||+++.+.++.+++.|.... .+.. ++..+.. ..|
T Consensus 638 ~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r 714 (850)
T TIGR01407 638 NQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSR 714 (850)
T ss_pred cCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccH
Confidence 111121 1 01222 33444444443 45899999999999999999997632 2333 3333333 478
Q ss_pred HHHHHHhhcCCeeEEEEcCcCCcCCCCCCcc--EEEEecCCCCC-----------------------------hhHHHHH
Q 003260 534 EETMEKFAQGAIKILICTNIVESGLDIQNAN--TIIVQDVQQFG-----------------------------LAQLYQL 582 (835)
Q Consensus 534 e~vl~~F~~g~~~ILVaT~iie~GIDIp~v~--~VIi~d~p~~s-----------------------------l~~l~Qr 582 (835)
.++++.|++++..||+||+.+.+|||+|+.. .||+...|--+ +..+.|.
T Consensus 715 ~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa 794 (850)
T TIGR01407 715 AKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQA 794 (850)
T ss_pred HHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHh
Confidence 8999999999999999999999999999866 56666655111 1235699
Q ss_pred hcccCCCCC-ceEEEEEecCC
Q 003260 583 RGRVGRADK-EAHAYLFYPDK 602 (835)
Q Consensus 583 ~GRaGR~g~-~G~ay~l~~~~ 602 (835)
+||+=|+.. .|. +++.+..
T Consensus 795 ~GRlIRs~~D~G~-v~ilD~R 814 (850)
T TIGR01407 795 LGRLIRRENDRGS-IVILDRR 814 (850)
T ss_pred hccccccCCceEE-EEEEccc
Confidence 999999874 354 4444433
No 123
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.79 E-value=3.6e-17 Score=187.42 Aligned_cols=313 Identities=19% Similarity=0.244 Sum_probs=216.0
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHH--HHHHHcC-CCEEEEEcccHHHHHHHHHHHHHhhc
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA--IFCVVSA-GKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a--~l~~l~~-g~qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
..++++|.+.++.+..-. +.+-+.|+....|-|||++.+.. -+..... .+..+|++|...|. .|.++|+. |.
T Consensus 166 g~lr~YQveGlnWLi~l~---engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~-NW~~Ef~r-f~ 240 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLY---ENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLD-NWMNEFKR-FT 240 (971)
T ss_pred CccchhhhccHHHHHHHH---hcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHH-HHHHHHHH-hC
Confidence 479999999999888644 34678999999999999985433 3333222 46789999998876 57888875 54
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhh-hcCCcceeeccHHHhhccc---ccCCccEEEEcCccccchhh---HHHHhhhc
Q 003260 357 KYPDIKVGLLSRFQSKAEKEEHLDMI-KHGHLNIIVGTHSLLGSRV---VYNNLGLLVVDEEQRFGVKQ---KEKIASFK 429 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l-~~G~~dIIVgT~~~L~~~l---~~~~l~llVIDEaHr~g~~~---~e~l~~l~ 429 (835)
|++++..++|. ..++....+.+ ..|..+|+|+|+++..++- .--++.++||||+||+-... .+.++.+
T Consensus 241 --P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f- 315 (971)
T KOG0385|consen 241 --PSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREF- 315 (971)
T ss_pred --CCcceEEEeCC--HHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHHHHHh-
Confidence 57999999995 45666655544 4568999999999776532 22467899999999985433 2334444
Q ss_pred CCceEEEeecCCChhhHHHHHhc-----------------CCCcc-------e---------------------ecCCCC
Q 003260 430 ISVDVLTLSATPIPRTLYLALTG-----------------FRDAS-------L---------------------ISTPPP 464 (835)
Q Consensus 430 ~~~~vL~lSATp~p~tl~~~~~g-----------------~~d~s-------~---------------------I~~~p~ 464 (835)
.....|++|+||....++..+.- |.+.. + ...||.
T Consensus 316 ~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppK 395 (971)
T KOG0385|consen 316 KTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPK 395 (971)
T ss_pred cccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCc
Confidence 34556789999976544322111 00000 0 001111
Q ss_pred CccceeE----------------------------------------------Eec-------ccC----------HHHH
Q 003260 465 ERLPIKT----------------------------------------------HLS-------AFS----------KEKV 481 (835)
Q Consensus 465 ~r~~v~~----------------------------------------------~~~-------~~~----------~~~l 481 (835)
....+.. |+. ++. .-.+
T Consensus 396 kE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~v 475 (971)
T KOG0385|consen 396 KELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLV 475 (971)
T ss_pred ceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceeh
Confidence 1110000 000 000 0012
Q ss_pred HHHHH-HHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCC---eeEEEEcCcCCcC
Q 003260 482 ISAIK-YELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGA---IKILICTNIVESG 557 (835)
Q Consensus 482 ~~~i~-~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~---~~ILVaT~iie~G 557 (835)
++.+. ....+|.+|++|..-..-.+-+.++..-. ++..+.+.|+++-++|...++.|.... .-.|++|...+-|
T Consensus 476 LDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R--~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLG 553 (971)
T KOG0385|consen 476 LDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLR--GYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLG 553 (971)
T ss_pred HHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhc--CceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccc
Confidence 33333 33356789999976655555555555444 889999999999999999999998653 5578999999999
Q ss_pred CCCCCccEEEEecCCCCChhHHHHHhcccCCCC--CceEEEEEecCCCcC
Q 003260 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD--KEAHAYLFYPDKSLL 605 (835)
Q Consensus 558 IDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~~~~ 605 (835)
||+..+++||.||.+ |++..-.|..-||.|.| ++-.+|.|+++..+.
T Consensus 554 INL~aADtVIlyDSD-WNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 554 INLTAADTVILYDSD-WNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred cccccccEEEEecCC-CCchhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 999999999999998 79999999999999999 457788899988763
No 124
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.77 E-value=4.7e-17 Score=194.19 Aligned_cols=355 Identities=17% Similarity=0.241 Sum_probs=246.9
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCC------CCCChHHHHHHHhCCC----CCCHhHHHHHHHHHHhhhcCCCCCcEEEEc
Q 003260 241 VAIQKMVVDLMELYLHRLKQKRPP------YPKNPAIAEFAAQFPY----EPTPDQKKAFLDVERDLTERETPMDRLICG 310 (835)
Q Consensus 241 ~~~~~~~~~l~~l~~~r~~~~~~~------~~~~~l~~~~~~~f~~----~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a 310 (835)
..|...+...++.|..|...+..+ .|..+-...++.+-.| +++.+|.+.++.++..+.. +.++|+..
T Consensus 320 ~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~~~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~---~~n~ILAD 396 (1373)
T KOG0384|consen 320 EDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPRFRKLEKQPEYKGGNELRDYQLEGLNWLLYSWYK---RNNCILAD 396 (1373)
T ss_pred hhhhhhHHHHHHHHhhhhccccCCCCccccCccchhHHHhhcCccccccchhhhhhcccchhHHHHHHh---cccceehh
Confidence 445555666777788886533222 2334455666666555 8999999999999987754 57899999
Q ss_pred cCCCcccHH---HHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcC--
Q 003260 311 DVGFGKTEV---ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG-- 385 (835)
Q Consensus 311 ~TGsGKT~v---al~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G-- 385 (835)
..|.|||.+ ||..++....-.+..||+||...++ .|..+|..+. +.++.+++|.....+-.+.++...++
T Consensus 397 EmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~-~W~~ef~~w~----~mn~i~y~g~~~sr~~i~~ye~~~~~~~ 471 (1373)
T KOG0384|consen 397 EMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTIT-AWEREFETWT----DMNVIVYHGNLESRQLIRQYEFYHSSNT 471 (1373)
T ss_pred hcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhH-HHHHHHHHHh----hhceeeeecchhHHHHHHHHHheecCCc
Confidence 999999987 5555555554456789999987655 5677777643 47899999977666655566655555
Q ss_pred ---CcceeeccHHHhhcccc-c--CCccEEEEcCccccchh---hHHHHhhhcCCceEEEeecCCChhhHHHHH--hcCC
Q 003260 386 ---HLNIIVGTHSLLGSRVV-Y--NNLGLLVVDEEQRFGVK---QKEKIASFKISVDVLTLSATPIPRTLYLAL--TGFR 454 (835)
Q Consensus 386 ---~~dIIVgT~~~L~~~l~-~--~~l~llVIDEaHr~g~~---~~e~l~~l~~~~~vL~lSATp~p~tl~~~~--~g~~ 454 (835)
+++++++|.+.+.++.. + -.+.+++||||||+-.. ..+.+..+.. -+.|++|+||..+++...+ ..+.
T Consensus 472 ~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~-~~rllitgTPlQNsikEL~sLl~Fl 550 (1373)
T KOG0384|consen 472 KKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKM-NHRLLITGTPLQNSLKELWSLLHFL 550 (1373)
T ss_pred cccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHHHhcc-cceeeecCCCccccHHHHHHHhccc
Confidence 58999999998876432 2 35678999999998543 2344555543 4556799999654432211 1111
Q ss_pred Cccee---------------------------------------cCCCCCccceeE------------------------
Q 003260 455 DASLI---------------------------------------STPPPERLPIKT------------------------ 471 (835)
Q Consensus 455 d~s~I---------------------------------------~~~p~~r~~v~~------------------------ 471 (835)
.+.-. ..||....-+..
T Consensus 551 ~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG 630 (1373)
T KOG0384|consen 551 MPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKG 630 (1373)
T ss_pred CCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhcc
Confidence 11000 001111000000
Q ss_pred ----------------------EecccCHH------------HH-------------HHHHHHHH-hcCCeEEEEecCcc
Q 003260 472 ----------------------HLSAFSKE------------KV-------------ISAIKYEL-DRGGQVFYVLPRIK 503 (835)
Q Consensus 472 ----------------------~~~~~~~~------------~l-------------~~~i~~~l-~~ggqvlVf~n~v~ 503 (835)
++..-..+ .. ++.++-.+ ..|++||||..-+.
T Consensus 631 ~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVR 710 (1373)
T KOG0384|consen 631 AKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVR 710 (1373)
T ss_pred CCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHH
Confidence 00000000 11 11111112 34689999999999
Q ss_pred ChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcC---CeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHH
Q 003260 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG---AIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 580 (835)
Q Consensus 504 ~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g---~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~ 580 (835)
-.+-++++|..+ ++..-.+.|.+..+.|+..++.|... ..-.|+||.+.+-|||+-.+++||+||.+ |++..=.
T Consensus 711 mLDIL~eYL~~r--~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSD-WNPQNDL 787 (1373)
T KOG0384|consen 711 MLDILAEYLSLR--GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSD-WNPQNDL 787 (1373)
T ss_pred HHHHHHHHHHHc--CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCC-CCcchHH
Confidence 999999999988 88999999999999999999999864 46789999999999999999999999998 7999999
Q ss_pred HHhcccCCCCC--ceEEEEEecCCCcCCH
Q 003260 581 QLRGRVGRADK--EAHAYLFYPDKSLLSD 607 (835)
Q Consensus 581 Qr~GRaGR~g~--~G~ay~l~~~~~~~~~ 607 (835)
|...||.|.|+ .-.+|.|++...+..+
T Consensus 788 QAqARaHRIGQkk~VnVYRLVTk~TvEeE 816 (1373)
T KOG0384|consen 788 QAQARAHRIGQKKHVNVYRLVTKNTVEEE 816 (1373)
T ss_pred HHHHHHHhhcccceEEEEEEecCCchHHH
Confidence 99999999995 4677999999877543
No 125
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.73 E-value=2.8e-17 Score=180.50 Aligned_cols=336 Identities=19% Similarity=0.166 Sum_probs=217.9
Q ss_pred HHHHHHHHHccCCCCCCCChHHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc
Q 003260 250 LMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329 (835)
Q Consensus 250 l~~l~~~r~~~~~~~~~~~~l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~ 329 (835)
+++.|.-|.-...+.++.+ ++ -.-.++|+|.+++.... ...+.+.-+|+.|.|+|||++-+.++...
T Consensus 278 lLeEYDFRND~~npdl~id-----LK--Pst~iRpYQEksL~KMF----GNgRARSGiIVLPCGAGKtLVGvTAa~ti-- 344 (776)
T KOG1123|consen 278 LLEEYDFRNDNVNPDLDID-----LK--PSTQIRPYQEKSLSKMF----GNGRARSGIIVLPCGAGKTLVGVTAACTI-- 344 (776)
T ss_pred hhhhhccccCCCCCCCCcC-----cC--cccccCchHHHHHHHHh----CCCcccCceEEEecCCCCceeeeeeeeee--
Confidence 6677766644333333221 11 11378999999987765 44566778999999999999987766443
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc----------
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS---------- 399 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~---------- 399 (835)
.+.+|||+..-+-+.||...|+. |+...+-.++..++... + ...+.+.|+|+|+.++..
T Consensus 345 -kK~clvLcts~VSVeQWkqQfk~-wsti~d~~i~rFTsd~K--e-------~~~~~~gvvvsTYsMva~t~kRS~eaek 413 (776)
T KOG1123|consen 345 -KKSCLVLCTSAVSVEQWKQQFKQ-WSTIQDDQICRFTSDAK--E-------RFPSGAGVVVTTYSMVAYTGKRSHEAEK 413 (776)
T ss_pred -cccEEEEecCccCHHHHHHHHHh-hcccCccceEEeecccc--c-------cCCCCCcEEEEeeehhhhcccccHHHHH
Confidence 67899999999999999999986 66554455666665321 1 112448899999988742
Q ss_pred ---ccccCCccEEEEcCccccchhhHHHHhhhcCCceEEEeecCCChhhHHHH-HhcCCCcceec-----CC--------
Q 003260 400 ---RVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLA-LTGFRDASLIS-----TP-------- 462 (835)
Q Consensus 400 ---~l~~~~l~llVIDEaHr~g~~~~e~l~~l~~~~~vL~lSATp~p~tl~~~-~~g~~d~s~I~-----~~-------- 462 (835)
.+.-..+|++|+||+|-........+...-...--|+||||.-.+..... +.++-.+.+.+ ..
T Consensus 414 ~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHcKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~V 493 (776)
T KOG1123|consen 414 IMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKV 493 (776)
T ss_pred HHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHhhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEE
Confidence 12336899999999998766655554444334445799999632211000 00000000000 00
Q ss_pred -------------------CCCccceeEEecccCHHHHHHHHHHHH-hcCCeEEEEecCccChHHHHHHHHhhCCCCeEE
Q 003260 463 -------------------PPERLPIKTHLSAFSKEKVISAIKYEL-DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIA 522 (835)
Q Consensus 463 -------------------p~~r~~v~~~~~~~~~~~l~~~i~~~l-~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~ 522 (835)
...+...-.++...+.-...+.+.+.. .+|.+++||..++-.....+-.|.+ -
T Consensus 494 qCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-------p 566 (776)
T KOG1123|consen 494 QCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-------P 566 (776)
T ss_pred eeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-------c
Confidence 000111122222222223344443333 4677888888776555544444432 3
Q ss_pred EEeCCCCHHHHHHHHHHhhcC-CeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCC------ceEE
Q 003260 523 IAHGQQYSRQLEETMEKFAQG-AIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK------EAHA 595 (835)
Q Consensus 523 ~lhg~m~~~ere~vl~~F~~g-~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~------~G~a 595 (835)
+++|..++.+|.++++.|+-+ .+.-++-..+..+.||+|.++++|......-|..|--||.||+-|+.+ .++.
T Consensus 567 fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafF 646 (776)
T KOG1123|consen 567 FIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFF 646 (776)
T ss_pred eEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceee
Confidence 789999999999999999865 577788889999999999999999988775466788999999999753 3566
Q ss_pred EEEecCCCcCCHHHHHHHHHH
Q 003260 596 YLFYPDKSLLSDQALERLAAL 616 (835)
Q Consensus 596 y~l~~~~~~~~~~a~~rl~~i 616 (835)
|.+++.+...-.+..+|-+-+
T Consensus 647 YSLVS~DTqEM~YStKRQ~FL 667 (776)
T KOG1123|consen 647 YSLVSKDTQEMYYSTKRQQFL 667 (776)
T ss_pred eeeeecchHHHHhhhhhhhhh
Confidence 778888766555666664433
No 126
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.72 E-value=1.9e-15 Score=184.71 Aligned_cols=313 Identities=19% Similarity=0.219 Sum_probs=197.2
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHH-HHHHHhhcC
Q 003260 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF-DVVSERFSK 357 (835)
Q Consensus 279 ~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~-~~~~~~f~~ 357 (835)
.|+++|-|.+-...|.+.+.+ +..+++.|+||+|||++|++|++... .+.+|+|++||++|+.|+. ..+.. ++.
T Consensus 243 ~~e~R~~Q~~ma~~V~~~l~~---~~~~~~eA~tGtGKT~ayllp~l~~~-~~~~vvI~t~T~~Lq~Ql~~~~i~~-l~~ 317 (820)
T PRK07246 243 GLEERPKQESFAKLVGEDFHD---GPASFIEAQTGIGKTYGYLLPLLAQS-DQRQIIVSVPTKILQDQIMAEEVKA-IQE 317 (820)
T ss_pred CCccCHHHHHHHHHHHHHHhC---CCcEEEECCCCCcHHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHHH-HHH
Confidence 479999999988888887743 46789999999999999999987653 5789999999999999995 44543 555
Q ss_pred CCCcEEEEecCCCCHH--H------------------------------------------HHHHHHhhh----------
Q 003260 358 YPDIKVGLLSRFQSKA--E------------------------------------------KEEHLDMIK---------- 383 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~--e------------------------------------------~~~~l~~l~---------- 383 (835)
..++++..+.|+...- . ....|..+.
T Consensus 318 ~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp 397 (820)
T PRK07246 318 VFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSL 397 (820)
T ss_pred hcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCC
Confidence 4467766655443210 0 000122211
Q ss_pred -------------cCCcceeeccHHHhhccc----ccCCccEEEEcCccccc-------hhh------HH----------
Q 003260 384 -------------HGHLNIIVGTHSLLGSRV----VYNNLGLLVVDEEQRFG-------VKQ------KE---------- 423 (835)
Q Consensus 384 -------------~G~~dIIVgT~~~L~~~l----~~~~l~llVIDEaHr~g-------~~~------~e---------- 423 (835)
...+||||+.|..|..++ .+..++.+||||||++- ... ..
T Consensus 398 ~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 477 (820)
T PRK07246 398 FYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKDFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSGPL 477 (820)
T ss_pred cchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhccCCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHHHH
Confidence 124689999999887543 35678999999999741 000 00
Q ss_pred -------------------------------------------HHh--------------h----h--------------
Q 003260 424 -------------------------------------------KIA--------------S----F-------------- 428 (835)
Q Consensus 424 -------------------------------------------~l~--------------~----l-------------- 428 (835)
.+. . +
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~l~ 557 (820)
T PRK07246 478 PLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTYLN 557 (820)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeEEE
Confidence 000 0 0
Q ss_pred -------------cCCceEEEeecCCC--hhhHHHHHhcCCCcceecCCCCCccceeEEe----cc---cCH----HHHH
Q 003260 429 -------------KISVDVLTLSATPI--PRTLYLALTGFRDASLISTPPPERLPIKTHL----SA---FSK----EKVI 482 (835)
Q Consensus 429 -------------~~~~~vL~lSATp~--p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~----~~---~~~----~~l~ 482 (835)
.....+|++|||.. +........|+.+......+.........++ .. .+. +.+.
T Consensus 558 ~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~ 637 (820)
T PRK07246 558 SASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIA 637 (820)
T ss_pred eeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHH
Confidence 01135678888874 2222233344433322222211100001111 10 111 2344
Q ss_pred HHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCC
Q 003260 483 SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562 (835)
Q Consensus 483 ~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~ 562 (835)
+.|......+|+++|++++.+.++.+++.|... ...+ ...|... .+.+++++|++++..||++|..+.+|||+|+
T Consensus 638 ~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~--~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~ 712 (820)
T PRK07246 638 KRLEELKQLQQPILVLFNSKKHLLAVSDLLDQW--QVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQ 712 (820)
T ss_pred HHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhc--CCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCC
Confidence 555555566799999999999999999999764 3444 4455322 2466899999988899999999999999973
Q ss_pred --ccEEEEecCCCC---C--------------------------hhHHHHHhcccCCCCC-ceEEEEEecCC
Q 003260 563 --ANTIIVQDVQQF---G--------------------------LAQLYQLRGRVGRADK-EAHAYLFYPDK 602 (835)
Q Consensus 563 --v~~VIi~d~p~~---s--------------------------l~~l~Qr~GRaGR~g~-~G~ay~l~~~~ 602 (835)
...||+...|-- + .-.+.|-+||.=|+.. .|.+ +++++.
T Consensus 713 ~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv-~ilD~R 783 (820)
T PRK07246 713 ADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAV-LILDRR 783 (820)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEE-EEECCc
Confidence 556677665510 1 1236699999999874 5654 444433
No 127
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.71 E-value=1.3e-15 Score=175.60 Aligned_cols=317 Identities=18% Similarity=0.209 Sum_probs=209.1
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHH---HHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA---LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~va---l~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~ 357 (835)
.+.|+|+.++..+.+--.+ + .--|+..+.|-|||.+. |.++...-.--+.+||+||.+ +..||..+|..++
T Consensus 205 ~Lf~yQreGV~WL~~L~~q-~--~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~T-ii~qW~~E~~~w~-- 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQ-R--AGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPAT-IIHQWMKEFQTWW-- 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhc-c--CCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHH-HHHHHHHHHHHhC--
Confidence 4679999999988764332 2 33489999999999883 333222212236899999986 5669999999864
Q ss_pred CCCcEEEEecCCCCH---------HHHHHHHHhhhcCCcceeeccHHHhhc---ccccCCccEEEEcCccccchhhH---
Q 003260 358 YPDIKVGLLSRFQSK---------AEKEEHLDMIKHGHLNIIVGTHSLLGS---RVVYNNLGLLVVDEEQRFGVKQK--- 422 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~---------~e~~~~l~~l~~G~~dIIVgT~~~L~~---~l~~~~l~llVIDEaHr~g~~~~--- 422 (835)
|.++|.++++..+. ..+...+.....-...|+|+|+..+.. .+.-..++++|+||.|+.-.+..
T Consensus 279 -p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~is 357 (923)
T KOG0387|consen 279 -PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSKIS 357 (923)
T ss_pred -cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccHHH
Confidence 34788888886552 111112222222235799999987753 34446789999999999854332
Q ss_pred HHHhhhcCCceEEEeecCCChhhHHHHHhc---CC------------------------Ccce-----------------
Q 003260 423 EKIASFKISVDVLTLSATPIPRTLYLALTG---FR------------------------DASL----------------- 458 (835)
Q Consensus 423 e~l~~l~~~~~vL~lSATp~p~tl~~~~~g---~~------------------------d~s~----------------- 458 (835)
..++++ ...+.++||+||+.+.+...+.- .. +.+-
T Consensus 358 lackki-~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI 436 (923)
T KOG0387|consen 358 LACKKI-RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLI 436 (923)
T ss_pred HHHHhc-cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 223333 45667789999986544322210 00 0000
Q ss_pred --------------ecCCCCCcccee----------------------------------------------------EE
Q 003260 459 --------------ISTPPPERLPIK----------------------------------------------------TH 472 (835)
Q Consensus 459 --------------I~~~p~~r~~v~----------------------------------------------------~~ 472 (835)
...|......+- ..
T Consensus 437 ~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~ 516 (923)
T KOG0387|consen 437 SPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDE 516 (923)
T ss_pred HHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCccccc
Confidence 000000000000 00
Q ss_pred e--ccc--------CHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhc
Q 003260 473 L--SAF--------SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQ 542 (835)
Q Consensus 473 ~--~~~--------~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~ 542 (835)
. ..+ ....+...+......|..+++|..++.-++-+...|.. .+++..+.+.|..+...|..++++|.+
T Consensus 517 ~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~-~~~ysylRmDGtT~~~~R~~lVd~Fne 595 (923)
T KOG0387|consen 517 KQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRR-AKGYSYLRMDGTTPAALRQKLVDRFNE 595 (923)
T ss_pred ccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHh-cCCceEEEecCCCccchhhHHHHhhcC
Confidence 0 000 00122333344445677888888887777777777774 348999999999999999999999998
Q ss_pred CC-ee-EEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCC--ceEEEEEecCCCcCCH
Q 003260 543 GA-IK-ILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK--EAHAYLFYPDKSLLSD 607 (835)
Q Consensus 543 g~-~~-ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~--~G~ay~l~~~~~~~~~ 607 (835)
++ +. .|++|.+.+-|+|+..+|.||+||++ |+++.-.|.+-|+-|.|+ .-.+|.|++...+...
T Consensus 596 ~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPd-WNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEk 663 (923)
T KOG0387|consen 596 DESIFVFLLTTRVGGLGLNLTGANRVIIFDPD-WNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEK 663 (923)
T ss_pred CCceEEEEEEecccccccccccCceEEEECCC-CCCccchHHHHHHHhhcCccceEEEEEecCCcHHHH
Confidence 75 33 57888999999999999999999998 899999999999999994 4677889998876443
No 128
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=1.1e-15 Score=180.65 Aligned_cols=307 Identities=18% Similarity=0.230 Sum_probs=207.2
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHH
Q 003260 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 272 ~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~ 351 (835)
++.....+..|++.|.-+--.+. ...|..+.||-|||+++.+|+.-....|+.|-|+...--||..-++.+
T Consensus 69 EA~~R~lG~r~ydVQliGglvLh---------~G~IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~m 139 (925)
T PRK12903 69 EATKRVLGKRPYDVQIIGGIILD---------LGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEM 139 (925)
T ss_pred HHHHHHhCCCcCchHHHHHHHHh---------cCCeeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHH
Confidence 33445567789999987754332 124899999999999999988776677999999999999999988888
Q ss_pred HHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHh-----hccc-------ccCCccEEEEcCcccc--
Q 003260 352 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRV-------VYNNLGLLVVDEEQRF-- 417 (835)
Q Consensus 352 ~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L-----~~~l-------~~~~l~llVIDEaHr~-- 417 (835)
...+. +.|++|++.....+..++...+ .+||++||..-| .+.+ ..+.+.+.||||+|.+
T Consensus 140 g~vy~-fLGLsvG~i~~~~~~~~rr~aY------~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILI 212 (925)
T PRK12903 140 GKVFN-FLGLSVGINKANMDPNLKREAY------ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILI 212 (925)
T ss_pred HHHHH-HhCCceeeeCCCCChHHHHHhc------cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheee
Confidence 87554 4499999999888887776655 389999998643 3333 2367888999999931
Q ss_pred -------------------------------------------------chhhHHHH----------------------h
Q 003260 418 -------------------------------------------------GVKQKEKI----------------------A 426 (835)
Q Consensus 418 -------------------------------------------------g~~~~e~l----------------------~ 426 (835)
|....+.+ .
T Consensus 213 DEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~ 292 (925)
T PRK12903 213 DEAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALR 292 (925)
T ss_pred cccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHH
Confidence 00000000 0
Q ss_pred h---h-------------------------------------------------------------cCCceEEEeecCCC
Q 003260 427 S---F-------------------------------------------------------------KISVDVLTLSATPI 442 (835)
Q Consensus 427 ~---l-------------------------------------------------------------~~~~~vL~lSATp~ 442 (835)
. + +...++-+||+|..
T Consensus 293 A~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~ 372 (925)
T PRK12903 293 AHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAK 372 (925)
T ss_pred HHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 0 0 00123445566643
Q ss_pred hhhHHHHHhcCCCcceecCCCCC---ccceeEEecccC---HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC
Q 003260 443 PRTLYLALTGFRDASLISTPPPE---RLPIKTHLSAFS---KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 516 (835)
Q Consensus 443 p~tl~~~~~g~~d~s~I~~~p~~---r~~v~~~~~~~~---~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~ 516 (835)
..... +..+.+..++.+|+.. |......+.... -..+++.+.+....|.+|||.|.+++..+.++..|.+.
T Consensus 373 te~~E--f~~iY~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~- 449 (925)
T PRK12903 373 TEEQE--FIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEA- 449 (925)
T ss_pred HHHHH--HHHHhCCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC-
Confidence 32222 2233455555555322 222111111111 23455566666678899999999999999999999998
Q ss_pred CCCeEEEEeCCCCHHHHHHHHHHhhcC-CeeEEEEcCcCCcCCCCCCcc--------EEEEecCCCCChhHHHHHhcccC
Q 003260 517 PGVDIAIAHGQQYSRQLEETMEKFAQG-AIKILICTNIVESGLDIQNAN--------TIIVQDVQQFGLAQLYQLRGRVG 587 (835)
Q Consensus 517 p~~~v~~lhg~m~~~ere~vl~~F~~g-~~~ILVaT~iie~GIDIp~v~--------~VIi~d~p~~sl~~l~Qr~GRaG 587 (835)
++...++++.-. +++.-+-. ..| ...|.|||++++||.||.--. +||....+. |..--.|.+||+|
T Consensus 450 -gi~h~vLNAk~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerhe-SrRIDnQLrGRaG 524 (925)
T PRK12903 450 -NIPHTVLNAKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAE-SRRIDNQLRGRSG 524 (925)
T ss_pred -CCCceeecccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCc-hHHHHHHHhcccc
Confidence 788888888743 33333322 344 467999999999999997222 777766664 5555679999999
Q ss_pred CCCCceEEEEEecCC
Q 003260 588 RADKEAHAYLFYPDK 602 (835)
Q Consensus 588 R~g~~G~ay~l~~~~ 602 (835)
|.|.+|.+-+|.+-+
T Consensus 525 RQGDpGss~f~lSLe 539 (925)
T PRK12903 525 RQGDVGESRFFISLD 539 (925)
T ss_pred cCCCCCcceEEEecc
Confidence 999999998887744
No 129
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.71 E-value=1.6e-15 Score=180.40 Aligned_cols=269 Identities=17% Similarity=0.152 Sum_probs=181.0
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHH
Q 003260 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 272 ~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~ 351 (835)
+......+..|++.|.-+.-.+. ...|..+.||.|||+++.+|+.-....|+.|-|++++..||.+-++.+
T Consensus 67 Ea~~R~lG~r~ydvQlig~l~L~---------~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m 137 (870)
T CHL00122 67 EASFRTLGLRHFDVQLIGGLVLN---------DGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWM 137 (870)
T ss_pred HHHHHHhCCCCCchHhhhhHhhc---------CCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHH
Confidence 34445667788999987753331 346999999999999999888765567999999999999999999999
Q ss_pred HHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHH-----hhccc-------ccCCccEEEEcCcccc--
Q 003260 352 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSL-----LGSRV-------VYNNLGLLVVDEEQRF-- 417 (835)
Q Consensus 352 ~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~-----L~~~l-------~~~~l~llVIDEaHr~-- 417 (835)
...+.-+ |++|+++.++.+..++...+ .+||++||..- |.+.+ ..+.+.+.||||+|.+
T Consensus 138 ~pvy~~L-GLsvg~i~~~~~~~err~aY------~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLI 210 (870)
T CHL00122 138 GQIYRFL-GLTVGLIQEGMSSEERKKNY------LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILI 210 (870)
T ss_pred HHHHHHc-CCceeeeCCCCChHHHHHhc------CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhee
Confidence 8865544 89999999988888877665 38999999863 33333 2356889999999921
Q ss_pred --------------------------------------------------chhhHHHH---------------------h
Q 003260 418 --------------------------------------------------GVKQKEKI---------------------A 426 (835)
Q Consensus 418 --------------------------------------------------g~~~~e~l---------------------~ 426 (835)
|....+.+ .
T Consensus 211 DeArTPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~ 290 (870)
T CHL00122 211 DEARTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALK 290 (870)
T ss_pred ccCCCceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence 00000110 0
Q ss_pred hh----------------------------------------------------------------cCCceEEEeecCCC
Q 003260 427 SF----------------------------------------------------------------KISVDVLTLSATPI 442 (835)
Q Consensus 427 ~l----------------------------------------------------------------~~~~~vL~lSATp~ 442 (835)
.. +...++.+||+|..
T Consensus 291 A~~lf~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~ 370 (870)
T CHL00122 291 AKELFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAK 370 (870)
T ss_pred HHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCH
Confidence 00 00134556677754
Q ss_pred hhhHHHHHhcCCCcceecCCCC---CccceeEEecccC---HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC
Q 003260 443 PRTLYLALTGFRDASLISTPPP---ERLPIKTHLSAFS---KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 516 (835)
Q Consensus 443 p~tl~~~~~g~~d~s~I~~~p~---~r~~v~~~~~~~~---~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~ 516 (835)
... ..+....+..++.+|+. .|......+.... ...+++.+.+....|.+|||.+.+++..+.++..|.+.
T Consensus 371 te~--~Ef~~iY~l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~- 447 (870)
T CHL00122 371 TEE--LEFEKIYNLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEY- 447 (870)
T ss_pred HHH--HHHHHHhCCCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHc-
Confidence 322 22333445556665533 2332222222211 23456666666788999999999999999999999998
Q ss_pred CCCeEEEEeCCCCHHHHH-HHHHHhhcCCeeEEEEcCcCCcCCCCC
Q 003260 517 PGVDIAIAHGQQYSRQLE-ETMEKFAQGAIKILICTNIVESGLDIQ 561 (835)
Q Consensus 517 p~~~v~~lhg~m~~~ere-~vl~~F~~g~~~ILVaT~iie~GIDIp 561 (835)
+++..++++.-...+++ .++.. ....-.|.|||++++||.||.
T Consensus 448 -gi~h~vLNAk~~~~~~EA~IIA~-AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 448 -RLPHQLLNAKPENVRRESEIVAQ-AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred -CCccceeeCCCccchhHHHHHHh-cCCCCcEEEeccccCCCcCee
Confidence 88888899873222222 33332 222457999999999999984
No 130
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.68 E-value=6.8e-15 Score=173.76 Aligned_cols=320 Identities=17% Similarity=0.197 Sum_probs=196.1
Q ss_pred CCCHhHHHHHHHHHHhhhcCC---CCCcEEEEccCCCcccHHHHHHHHHHHcC--C-----CEEEEEcccHHHHHHHHHH
Q 003260 281 EPTPDQKKAFLDVERDLTERE---TPMDRLICGDVGFGKTEVALRAIFCVVSA--G-----KQAMVLAPTIVLAKQHFDV 350 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~---~~~d~Ll~a~TGsGKT~val~a~l~~l~~--g-----~qvlVLvPtr~LA~Q~~~~ 350 (835)
.++|+|.+.+..+.+.+.... ...-+|+.-..|+|||+..+..+...+.. + .+.+|++|. .|+..|+++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 689999999999998886431 34568999999999999977666655544 3 568999996 588899999
Q ss_pred HHHhhcCCCCcEEEEecCCCCH--HHHHHHHHh-hhcCCcceeeccHHHhh---cccccCCccEEEEcCccccch---hh
Q 003260 351 VSERFSKYPDIKVGLLSRFQSK--AEKEEHLDM-IKHGHLNIIVGTHSLLG---SRVVYNNLGLLVVDEEQRFGV---KQ 421 (835)
Q Consensus 351 ~~~~f~~~~gi~V~~l~g~~s~--~e~~~~l~~-l~~G~~dIIVgT~~~L~---~~l~~~~l~llVIDEaHr~g~---~~ 421 (835)
|.++.... .+....+.+..+. .....++.. -..-..-|.+.+.+.+. +.+....+|++|+||.|+.-. ..
T Consensus 317 F~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~s~~ 395 (776)
T KOG0390|consen 317 FGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSDSLT 395 (776)
T ss_pred HHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchhhHH
Confidence 99977642 3555555554432 000011100 01112346666776664 345678899999999999743 33
Q ss_pred HHHHhhhcCCceEEEeecCCChhhHHHH--HhcCCCcceecCCC------------------------------------
Q 003260 422 KEKIASFKISVDVLTLSATPIPRTLYLA--LTGFRDASLISTPP------------------------------------ 463 (835)
Q Consensus 422 ~e~l~~l~~~~~vL~lSATp~p~tl~~~--~~g~~d~s~I~~~p------------------------------------ 463 (835)
...|..+... +.|+||+||+.+.+... ...+-++.++.+..
T Consensus 396 ~kaL~~l~t~-rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t 474 (776)
T KOG0390|consen 396 LKALSSLKTP-RRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELT 474 (776)
T ss_pred HHHHHhcCCC-ceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHH
Confidence 4556666444 45679999976543221 11111111111000
Q ss_pred ------------CCccceeE-EecccC----HHHHHHHHHHH----------------Hh--cCCeEE------------
Q 003260 464 ------------PERLPIKT-HLSAFS----KEKVISAIKYE----------------LD--RGGQVF------------ 496 (835)
Q Consensus 464 ------------~~r~~v~~-~~~~~~----~~~l~~~i~~~----------------l~--~ggqvl------------ 496 (835)
....|... ++...+ ...++..+... +. -.+..+
T Consensus 475 ~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~ 554 (776)
T KOG0390|consen 475 NKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTEKEKA 554 (776)
T ss_pred HhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccccccccc
Confidence 00001000 000000 00111111110 00 001111
Q ss_pred -----------------------------------------EEecCcc---ChHHHHHHHHhhCCCCeEEEEeCCCCHHH
Q 003260 497 -----------------------------------------YVLPRIK---GLEEPMDFLQQAFPGVDIAIAHGQQYSRQ 532 (835)
Q Consensus 497 -----------------------------------------Vf~n~v~---~~e~l~~~L~~~~p~~~v~~lhg~m~~~e 532 (835)
+|+--+. .+..+.+.+...- |+.+..+||+|+..+
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~-g~~~~rLdG~~~~~q 633 (776)
T KOG0390|consen 555 FKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWR-GYEVLRLDGKTSIKQ 633 (776)
T ss_pred ccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhc-CceEEEEcCCCchHH
Confidence 1111111 1222222222222 789999999999999
Q ss_pred HHHHHHHhhcCC---eeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCc--eEEEEEecCCCcC
Q 003260 533 LEETMEKFAQGA---IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE--AHAYLFYPDKSLL 605 (835)
Q Consensus 533 re~vl~~F~~g~---~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~--G~ay~l~~~~~~~ 605 (835)
|+.+++.|.+.. .-.|.+|.+.+.||++-+++.||++|.+ |+++.-.|.++||-|.|++ -++|.|++.....
T Consensus 634 Rq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~d-WNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiE 710 (776)
T KOG0390|consen 634 RQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPD-WNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIE 710 (776)
T ss_pred HHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCC-CCchhHHHHHHHhccCCCcceEEEEEeecCCCch
Confidence 999999998753 3357788899999999999999999998 7999999999999999955 6667788877653
No 131
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.67 E-value=1.4e-15 Score=152.30 Aligned_cols=174 Identities=26% Similarity=0.255 Sum_probs=125.7
Q ss_pred hCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCC--CEEEEEcccHHHHHHHHHHHHHh
Q 003260 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSER 354 (835)
Q Consensus 277 ~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g--~qvlVLvPtr~LA~Q~~~~~~~~ 354 (835)
.++.+++|+|.+++..+.... ..++++++||+|||.+++.+++..+..+ ..++|++|+..++.|+..++...
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~------~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGL------RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCC------CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 346789999999999887421 5799999999999999988888887765 78999999999999999999886
Q ss_pred hcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----cccCCccEEEEcCccccch-hhHHH----
Q 003260 355 FSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFGV-KQKEK---- 424 (835)
Q Consensus 355 f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l~~~~l~llVIDEaHr~g~-~~~e~---- 424 (835)
+..........+.+... ...+..+..+..+|+++|++.+.+. .....++++|+||+|.+.. .....
T Consensus 78 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 78 GPSLGLKVVGLYGGDSK----REQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred hccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 54432244555555432 2244455556459999999877653 2445688999999999864 22222
Q ss_pred HhhhcCCceEEEeecCCChhhHHHHHhcCCCcceec
Q 003260 425 IASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 460 (835)
Q Consensus 425 l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~ 460 (835)
+.......+++++||||..........+......+.
T Consensus 154 ~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~ 189 (201)
T smart00487 154 LKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFID 189 (201)
T ss_pred HHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEe
Confidence 233346889999999997666665555555443333
No 132
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.65 E-value=3.5e-16 Score=156.47 Aligned_cols=154 Identities=23% Similarity=0.311 Sum_probs=105.5
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCC
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP 359 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~ 359 (835)
|+|+|+|.+|+..+.+.+......+..++.+|||||||.+++..+..... +++|++|+..|+.|+.+.+.......
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---~~l~~~p~~~l~~Q~~~~~~~~~~~~- 77 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---KVLIVAPNISLLEQWYDEFDDFGSEK- 77 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---EEEEEESSHHHHHHHHHHHHHHSTTS-
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---ceeEecCHHHHHHHHHHHHHHhhhhh-
Confidence 57899999999999987753223578999999999999999877776654 99999999999999999996533221
Q ss_pred CcEEEEe-----------cCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc----------------ccCCccEEEEc
Q 003260 360 DIKVGLL-----------SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV----------------VYNNLGLLVVD 412 (835)
Q Consensus 360 gi~V~~l-----------~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l----------------~~~~l~llVID 412 (835)
..+... ........ ..........++++.|...+.... .....++||+|
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 78 -YNFFEKSIKPAYDSKEFISIQDDIS---DKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIID 153 (184)
T ss_dssp -EEEEE--GGGCCE-SEEETTTTEEE---HHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEE
T ss_pred -hhhcccccccccccccccccccccc---cccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEe
Confidence 111110 00001111 111223345789999988776432 12467899999
Q ss_pred Cccccchhh-HHHHhhhcCCceEEEeecCCC
Q 003260 413 EEQRFGVKQ-KEKIASFKISVDVLTLSATPI 442 (835)
Q Consensus 413 EaHr~g~~~-~e~l~~l~~~~~vL~lSATp~ 442 (835)
|||++.... ...+.. .....+|+|||||.
T Consensus 154 EaH~~~~~~~~~~i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 154 EAHHYPSDSSYREIIE-FKAAFILGLTATPF 183 (184)
T ss_dssp TGGCTHHHHHHHHHHH-SSCCEEEEEESS-S
T ss_pred hhhhcCCHHHHHHHHc-CCCCeEEEEEeCcc
Confidence 999997766 555544 56788999999984
No 133
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=1.7e-14 Score=171.35 Aligned_cols=267 Identities=17% Similarity=0.150 Sum_probs=177.8
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHH
Q 003260 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 274 ~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
-....+..|.+.|..+--.+. ...|..+.||-|||+++.+|+.-....|+.|-|++++.-||..-++.+..
T Consensus 78 ~~R~lG~r~ydVQliGgl~Lh---------~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~ 148 (939)
T PRK12902 78 SKRVLGMRHFDVQLIGGMVLH---------EGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQ 148 (939)
T ss_pred HHHHhCCCcchhHHHhhhhhc---------CCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHH
Confidence 344567788899987754432 23599999999999999999887777899999999999999999999887
Q ss_pred hhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHh-----hccc-------ccCCccEEEEcCcccc----
Q 003260 354 RFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRV-------VYNNLGLLVVDEEQRF---- 417 (835)
Q Consensus 354 ~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L-----~~~l-------~~~~l~llVIDEaHr~---- 417 (835)
.+.- .|++|+++.+..+..++...+ .+||++||+.-| .+.+ ..+.+.+.||||+|.+
T Consensus 149 vy~~-LGLtvg~i~~~~~~~err~aY------~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDE 221 (939)
T PRK12902 149 VHRF-LGLSVGLIQQDMSPEERKKNY------ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDE 221 (939)
T ss_pred HHHH-hCCeEEEECCCCChHHHHHhc------CCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeecc
Confidence 5554 499999999888887776655 489999998755 3322 3367889999999941
Q ss_pred --------chh------------hHHHHhh--------------------------------------------------
Q 003260 418 --------GVK------------QKEKIAS-------------------------------------------------- 427 (835)
Q Consensus 418 --------g~~------------~~e~l~~-------------------------------------------------- 427 (835)
|.. ....+..
T Consensus 222 ArTPLIISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~ 301 (939)
T PRK12902 222 ARTPLIISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIF 301 (939)
T ss_pred CCCcccccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHH
Confidence 000 0000000
Q ss_pred --------h-------------------------------------------------------------cCCceEEEee
Q 003260 428 --------F-------------------------------------------------------------KISVDVLTLS 438 (835)
Q Consensus 428 --------l-------------------------------------------------------------~~~~~vL~lS 438 (835)
+ +...++-+||
T Consensus 302 ~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMT 381 (939)
T PRK12902 302 NALKAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMT 381 (939)
T ss_pred HHHHHHHHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccC
Confidence 0 0012344455
Q ss_pred cCCChhhHHHHHhcCCCcceecCCCC---CccceeEEeccc---CHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHH
Q 003260 439 ATPIPRTLYLALTGFRDASLISTPPP---ERLPIKTHLSAF---SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFL 512 (835)
Q Consensus 439 ATp~p~tl~~~~~g~~d~s~I~~~p~---~r~~v~~~~~~~---~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L 512 (835)
+|...... .+..+.+..++.+|+. .|......+... ....+++.+.+....|.+|||-+.+++..+.+++.|
T Consensus 382 GTa~te~~--Ef~~iY~l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L 459 (939)
T PRK12902 382 GTAKTEEV--EFEKTYKLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALL 459 (939)
T ss_pred CCCHHHHH--HHHHHhCCcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHH
Confidence 55432222 2223344455555432 233222222221 123455566666678999999999999999999999
Q ss_pred HhhCCCCeEEEEeCCCCHHHHHH-HHHHhhcCCeeEEEEcCcCCcCCCCC
Q 003260 513 QQAFPGVDIAIAHGQQYSRQLEE-TMEKFAQGAIKILICTNIVESGLDIQ 561 (835)
Q Consensus 513 ~~~~p~~~v~~lhg~m~~~ere~-vl~~F~~g~~~ILVaT~iie~GIDIp 561 (835)
... ++...++++.-...+++. ++.. ....-.|-|||++++||-||.
T Consensus 460 ~~~--gi~h~vLNAk~~~~~~EA~IIa~-AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 460 QEQ--GIPHNLLNAKPENVEREAEIVAQ-AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred HHc--CCchheeeCCCcchHhHHHHHHh-cCCCCcEEEeccCCCCCcCEe
Confidence 998 888888888732223332 3322 222356999999999999985
No 134
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.62 E-value=2.3e-13 Score=169.30 Aligned_cols=120 Identities=16% Similarity=0.165 Sum_probs=84.8
Q ss_pred HHHHHHHHH-hcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCC
Q 003260 481 VISAIKYEL-DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559 (835)
Q Consensus 481 l~~~i~~~l-~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GID 559 (835)
+.+.|...+ ..+|.++|++++.+..+.+++.|....+.-...++.-+++...|.++++.|++++-.||++|..+.+|||
T Consensus 740 la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD 819 (928)
T PRK08074 740 VAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGID 819 (928)
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccc
Confidence 344444444 3568999999999999999999987643222222322344456788999999988899999999999999
Q ss_pred CCC--ccEEEEecCCCCC------------------------------hhHHHHHhcccCCCCC-ceEEEEEecCC
Q 003260 560 IQN--ANTIIVQDVQQFG------------------------------LAQLYQLRGRVGRADK-EAHAYLFYPDK 602 (835)
Q Consensus 560 Ip~--v~~VIi~d~p~~s------------------------------l~~l~Qr~GRaGR~g~-~G~ay~l~~~~ 602 (835)
+|+ +..||+...| |. .-.+.|-+||.=|+.. .|. +++.++.
T Consensus 820 ~pg~~l~~viI~kLP-F~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~-v~ilD~R 893 (928)
T PRK08074 820 IPGDELSCLVIVRLP-FAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGT-VFVLDRR 893 (928)
T ss_pred cCCCceEEEEEecCC-CCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEE-EEEecCc
Confidence 997 4788887765 21 1135699999999874 354 4444443
No 135
>PF03461 TRCF: TRCF domain; InterPro: IPR005118 This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by the transcription-repair-coupling factor (TRCF) which releases RNAP and the truncated transcript.; GO: 0003684 damaged DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0006281 DNA repair; PDB: 2QSR_A 2EYQ_A.
Probab=99.61 E-value=1.3e-15 Score=139.74 Aligned_cols=89 Identities=24% Similarity=0.375 Sum_probs=71.8
Q ss_pred eeecCCCCccccccccCCchHHHHHHHhhhhcCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhcCccEEEecC
Q 003260 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASG 764 (835)
Q Consensus 685 ~l~idp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~dr~G~~p~~~~~l~~~~~~~~~~~~~g~~~i~~~~ 764 (835)
+++++++||+.||++..+|+++|++++.+. +.+++.++..||.||||++|++|++|+.+++||.+|+++||.+|...+
T Consensus 1 dl~~~a~IP~~YI~d~~~Rl~~Yrrl~~~~--~~~el~~l~~El~DRFG~~P~ev~~L~~~~~lk~~a~~~gi~~i~~~~ 78 (101)
T PF03461_consen 1 DLPVDAYIPEDYIPDDDERLELYRRLASAE--SEEELEDLREELIDRFGPLPEEVENLLELARLKILARKLGIESIKQKG 78 (101)
T ss_dssp E-SS--S--TTTS--HHHHHHHHHHHHC----SHHHHHHHHHHHHHHH-S--HHHHHHHHHHHHHHHHHHCTECEEEEET
T ss_pred CCCccccCChHHcCChHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHCCCcEEEecC
Confidence 578999999999999999999999999976 567999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCCH
Q 003260 765 KMVGMKTNMNK 775 (835)
Q Consensus 765 ~~~~~~~~~~~ 775 (835)
+.+.+.+....
T Consensus 79 ~~i~i~~~~~~ 89 (101)
T PF03461_consen 79 NSIYITFSKNK 89 (101)
T ss_dssp TEEEEEE-TTH
T ss_pred CEEEEEECCCC
Confidence 99999886553
No 136
>COG4889 Predicted helicase [General function prediction only]
Probab=99.61 E-value=1.7e-14 Score=166.68 Aligned_cols=321 Identities=21% Similarity=0.284 Sum_probs=189.8
Q ss_pred ChHHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHH
Q 003260 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 268 ~~l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~ 347 (835)
..++..+.-.-|+.|+|+|+.||+..++......+++ +.+.+|+|||..+|..+.... ..++|+|||...|..|.
T Consensus 148 ~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGk---LIMAcGTGKTfTsLkisEala--~~~iL~LvPSIsLLsQT 222 (1518)
T COG4889 148 TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGK---LIMACGTGKTFTSLKISEALA--AARILFLVPSISLLSQT 222 (1518)
T ss_pred cccccccccCCCCCCChhHHHHHHHHHhhcccccCCc---EEEecCCCccchHHHHHHHHh--hhheEeecchHHHHHHH
Confidence 3466666667788999999999999999887655554 345569999999877654432 27899999999999999
Q ss_pred HHHHHHhhcCCCCcEEEEecCCCCHH-----------------HHHHHHHhh----hcCCcceeeccHHHhhc-----cc
Q 003260 348 FDVVSERFSKYPDIKVGLLSRFQSKA-----------------EKEEHLDMI----KHGHLNIIVGTHSLLGS-----RV 401 (835)
Q Consensus 348 ~~~~~~~f~~~~gi~V~~l~g~~s~~-----------------e~~~~l~~l----~~G~~dIIVgT~~~L~~-----~l 401 (835)
.+++... ... .++...++++.... ..+.++..+ +....-||++|++.+-. ..
T Consensus 223 lrew~~~-~~l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~ 300 (1518)
T COG4889 223 LREWTAQ-KEL-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEA 300 (1518)
T ss_pred HHHHhhc-cCc-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHc
Confidence 8888753 223 35554444432111 011111111 11225588888876632 34
Q ss_pred ccCCccEEEEcCcccc-chh----hHHHHhhh-----cCCceEEEeecCCChhhHH---HH------HhcCCCcceecCC
Q 003260 402 VYNNLGLLVVDEEQRF-GVK----QKEKIASF-----KISVDVLTLSATPIPRTLY---LA------LTGFRDASLISTP 462 (835)
Q Consensus 402 ~~~~l~llVIDEaHr~-g~~----~~e~l~~l-----~~~~~vL~lSATp~p~tl~---~~------~~g~~d~s~I~~~ 462 (835)
-+..+++||.|||||- |.. ....+... -...+.+.|||||.--+.. .+ +..+.|.... -+
T Consensus 301 G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~f-Ge 379 (1518)
T COG4889 301 GLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTF-GE 379 (1518)
T ss_pred CCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhh-ch
Confidence 5778999999999984 221 11111111 1234567899998421110 00 0001110000 00
Q ss_pred CCCc------------cceeEEecccCHHHHHHHHHH-----------------------HHhcCC--------------
Q 003260 463 PPER------------LPIKTHLSAFSKEKVISAIKY-----------------------ELDRGG-------------- 493 (835)
Q Consensus 463 p~~r------------~~v~~~~~~~~~~~l~~~i~~-----------------------~l~~gg-------------- 493 (835)
.-.| .+....+...+...+...+.. ...+++
T Consensus 380 ef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap 459 (1518)
T COG4889 380 EFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAP 459 (1518)
T ss_pred hhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchH
Confidence 0000 011111111111111111111 011111
Q ss_pred --eEEEEecCccChHHH-----------HHHHHhhCCCCeEEEEe--CCCCHHHHHHHHH---HhhcCCeeEEEEcCcCC
Q 003260 494 --QVFYVLPRIKGLEEP-----------MDFLQQAFPGVDIAIAH--GQQYSRQLEETME---KFAQGAIKILICTNIVE 555 (835)
Q Consensus 494 --qvlVf~n~v~~~e~l-----------~~~L~~~~p~~~v~~lh--g~m~~~ere~vl~---~F~~g~~~ILVaT~iie 555 (835)
+.+-||.++++...+ -+.|.+.++++.+.+-| |.|+..+|...+. .|...+++||---..+.
T Consensus 460 ~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLS 539 (1518)
T COG4889 460 MQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLS 539 (1518)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhh
Confidence 234566665543332 23455666777777665 8899888855543 45667899999889999
Q ss_pred cCCCCCCccEEEEecCCCCChhHHHHHhcccCCCC---CceEEEE
Q 003260 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD---KEAHAYL 597 (835)
Q Consensus 556 ~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g---~~G~ay~ 597 (835)
+|||+|.++.||.+++.. ++-+.+|.+||+.|-. ..||.++
T Consensus 540 EGVDVPaLDsViFf~pr~-smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 540 EGVDVPALDSVIFFDPRS-SMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred cCCCccccceEEEecCch-hHHHHHHHHHHHHHhCcCCccceEEE
Confidence 999999999999999876 8999999999999964 3466655
No 137
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.60 E-value=1.7e-14 Score=168.72 Aligned_cols=150 Identities=21% Similarity=0.218 Sum_probs=103.3
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc--CCCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~--~g~qvlVLvPtr~LA~Q~~~~~~~~f~~ 357 (835)
|-|-.+|.+.+..+- ++...+|++||-+|||.+...++-+.+. +..-|++++||++|+.|....+..+|..
T Consensus 510 F~Pd~WQ~elLDsvD-------r~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~ 582 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVD-------RNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDT 582 (1330)
T ss_pred cCCcHHHHHHhhhhh-------cccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhcc
Confidence 567888998876653 2467899999999999997777766654 4578999999999999999999998833
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc--------ccCCccEEEEcCccccchhhH----HHH
Q 003260 358 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV--------VYNNLGLLVVDEEQRFGVKQK----EKI 425 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l--------~~~~l~llVIDEaHr~g~~~~----e~l 425 (835)
-.-.+...+.|..+ ++-.+ .--.|+|+|+-|+.+...+ ....+.++|+||+|..|.... +.+
T Consensus 583 ~t~~rg~sl~g~lt---qEYsi---np~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eql 656 (1330)
T KOG0949|consen 583 KTFLRGVSLLGDLT---QEYSI---NPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQL 656 (1330)
T ss_pred CccccchhhHhhhh---HHhcC---CchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHH
Confidence 21122222222211 11111 1125899999998765321 236789999999999876443 333
Q ss_pred hhhcCCceEEEeecCCCh
Q 003260 426 ASFKISVDVLTLSATPIP 443 (835)
Q Consensus 426 ~~l~~~~~vL~lSATp~p 443 (835)
..+ ..+.+|++|||..+
T Consensus 657 l~l-i~CP~L~LSATigN 673 (1330)
T KOG0949|consen 657 LLL-IPCPFLVLSATIGN 673 (1330)
T ss_pred HHh-cCCCeeEEecccCC
Confidence 322 46789999999743
No 138
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.60 E-value=4.5e-15 Score=140.26 Aligned_cols=116 Identities=29% Similarity=0.572 Sum_probs=104.2
Q ss_pred HHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCC
Q 003260 480 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559 (835)
Q Consensus 480 ~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GID 559 (835)
.+.+.+......+++++|||++...++.+++.|.+. +..+.++||+++..++..+++.|.++...||++|+++++|+|
T Consensus 16 ~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d 93 (131)
T cd00079 16 ALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKP--GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGID 93 (131)
T ss_pred HHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhc--CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcC
Confidence 344455554446789999999999999999999884 788999999999999999999999999999999999999999
Q ss_pred CCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEE
Q 003260 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLF 598 (835)
Q Consensus 560 Ip~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l 598 (835)
+|++++||+++.+ ++...+.|++||+||.|+.|.|+++
T Consensus 94 ~~~~~~vi~~~~~-~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 94 LPNVSVVINYDLP-WSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hhhCCEEEEeCCC-CCHHHheecccccccCCCCceEEeC
Confidence 9999999999998 5999999999999999998988764
No 139
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.60 E-value=3.2e-14 Score=169.63 Aligned_cols=311 Identities=21% Similarity=0.303 Sum_probs=206.2
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH-HHcC--------CCEEEEEcccHHHHHHHHHHH
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC-VVSA--------GKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~-~l~~--------g~qvlVLvPtr~LA~Q~~~~~ 351 (835)
.++.+|++.++.+. -+. ...-+-|+|.+.|-|||++.+-.+.. ...+ ....+|+||. .|+-.|..++
T Consensus 975 ~LRkYQqEGVnWLa-FLn--ky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~ 1050 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLA-FLN--KYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEV 1050 (1549)
T ss_pred HHHHHHHhccHHHH-HHH--HhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHH
Confidence 46789999988653 121 12345699999999999996543322 2111 2358999997 5888999999
Q ss_pred HHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccccc---CCccEEEEcCccccchhh---HHHH
Q 003260 352 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVY---NNLGLLVVDEEQRFGVKQ---KEKI 425 (835)
Q Consensus 352 ~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~---~~l~llVIDEaHr~g~~~---~e~l 425 (835)
.+ |..+ ++|....| .+.++.......+ +.+|+|+.+..+.+++.+ .++.++|+||-|-+-..+ ...+
T Consensus 1051 ~k-f~pf--L~v~~yvg--~p~~r~~lR~q~~--~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~kav 1123 (1549)
T KOG0392|consen 1051 KK-FFPF--LKVLQYVG--PPAERRELRDQYK--NANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAV 1123 (1549)
T ss_pred HH-hcch--hhhhhhcC--ChHHHHHHHhhcc--ccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchHHHHHHHH
Confidence 87 5554 67777777 3445544444433 369999999999876543 578899999999875433 3445
Q ss_pred hhhcCCceEEEeecCCChhhHHHH-------HhcC------------------CCcce----------------------
Q 003260 426 ASFKISVDVLTLSATPIPRTLYLA-------LTGF------------------RDASL---------------------- 458 (835)
Q Consensus 426 ~~l~~~~~vL~lSATp~p~tl~~~-------~~g~------------------~d~s~---------------------- 458 (835)
++++.+ +.+.+|+||+.+..... +-|+ +++..
T Consensus 1124 kqL~a~-hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF 1202 (1549)
T KOG0392|consen 1124 KQLRAN-HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPF 1202 (1549)
T ss_pred HHHhhc-ceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHH
Confidence 555444 45669999974321100 0000 01000
Q ss_pred ----------ecCCCCCccce----------------------------------eE---------------------Ee
Q 003260 459 ----------ISTPPPERLPI----------------------------------KT---------------------HL 473 (835)
Q Consensus 459 ----------I~~~p~~r~~v----------------------------------~~---------------------~~ 473 (835)
-..||..-.++ .+ ..
T Consensus 1203 ~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvl 1282 (1549)
T KOG0392|consen 1203 LLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVL 1282 (1549)
T ss_pred HHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceee
Confidence 00011100000 00 00
Q ss_pred cc--------------cCH-------HHHHHHHHHHHh------------------cCCeEEEEecCccChHHHHHHH-H
Q 003260 474 SA--------------FSK-------EKVISAIKYELD------------------RGGQVFYVLPRIKGLEEPMDFL-Q 513 (835)
Q Consensus 474 ~~--------------~~~-------~~l~~~i~~~l~------------------~ggqvlVf~n~v~~~e~l~~~L-~ 513 (835)
.+ .+. .-.+.++.+.+. .+++++|||.-+..++-+.+.| +
T Consensus 1283 t~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k 1362 (1549)
T KOG0392|consen 1283 TPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFK 1362 (1549)
T ss_pred CCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhh
Confidence 00 000 001222322221 2467999999988888887665 4
Q ss_pred hhCCCCeEEEEeCCCCHHHHHHHHHHhhcC-CeeEEE-EcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCC
Q 003260 514 QAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIKILI-CTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK 591 (835)
Q Consensus 514 ~~~p~~~v~~lhg~m~~~ere~vl~~F~~g-~~~ILV-aT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~ 591 (835)
..+|.+....+.|..++.+|.++.++|.++ .++||+ +|.+.+-|+|+.++++||.+..+ |++..-.|.+-||.|-|+
T Consensus 1363 ~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHD-WNPMrDLQAMDRAHRIGQ 1441 (1549)
T KOG0392|consen 1363 KYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHD-WNPMRDLQAMDRAHRIGQ 1441 (1549)
T ss_pred hhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecC-CCchhhHHHHHHHHhhcC
Confidence 556888888999999999999999999998 799875 66699999999999999999988 799999999999999995
Q ss_pred c--eEEEEEecCCCc
Q 003260 592 E--AHAYLFYPDKSL 604 (835)
Q Consensus 592 ~--G~ay~l~~~~~~ 604 (835)
+ -.+|.+.+....
T Consensus 1442 KrvVNVyRlItrGTL 1456 (1549)
T KOG0392|consen 1442 KRVVNVYRLITRGTL 1456 (1549)
T ss_pred ceeeeeeeehhcccH
Confidence 4 567889888754
No 140
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.59 E-value=1.6e-13 Score=158.53 Aligned_cols=312 Identities=17% Similarity=0.265 Sum_probs=211.2
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHH--HHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL--RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val--~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~ 357 (835)
+++-++|.-.++.+.- | ...+++.|+..+.|-|||.+.+ ++.+........-||+||...|- .|.++|.+ |+
T Consensus 398 i~LkdYQlvGvNWL~L-l--yk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTle-NWlrEf~k-wC- 471 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLL-L--YKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLE-NWLREFAK-WC- 471 (941)
T ss_pred CcccchhhhhHHHHHH-H--HHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHH-HHHHHHHH-hC-
Confidence 4688999999987753 2 2346788999999999998853 44444444456679999998765 56777876 54
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhhhcC--CcceeeccHHHhhcc------cccCCccEEEEcCccccch---hhHHHHh
Q 003260 358 YPDIKVGLLSRFQSKAEKEEHLDMIKHG--HLNIIVGTHSLLGSR------VVYNNLGLLVVDEEQRFGV---KQKEKIA 426 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l~~G--~~dIIVgT~~~L~~~------l~~~~l~llVIDEaHr~g~---~~~e~l~ 426 (835)
|.++|..++|. ..++......+..+ .+||+++|+.+.... +.-.+++++|+||.|.+-. .....|.
T Consensus 472 -Psl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM 548 (941)
T KOG0389|consen 472 -PSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLM 548 (941)
T ss_pred -CceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHHhc
Confidence 46899999994 57777777777766 789999999876421 2235789999999998633 3344454
Q ss_pred hhcCCceEEEeecCCChhhHHHHH------------hcCCCcc---------------------------------e---
Q 003260 427 SFKISVDVLTLSATPIPRTLYLAL------------TGFRDAS---------------------------------L--- 458 (835)
Q Consensus 427 ~l~~~~~vL~lSATp~p~tl~~~~------------~g~~d~s---------------------------------~--- 458 (835)
..+.+ ..|++|+||-...+...+ ..+.+.. +
T Consensus 549 ~I~An-~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR 627 (941)
T KOG0389|consen 549 SINAN-FRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRR 627 (941)
T ss_pred ccccc-ceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 45444 456799998532211000 0000000 0
Q ss_pred -----e-cCCCCC-----------------------------------cc--------------ce--eEEe--------
Q 003260 459 -----I-STPPPE-----------------------------------RL--------------PI--KTHL-------- 473 (835)
Q Consensus 459 -----I-~~~p~~-----------------------------------r~--------------~v--~~~~-------- 473 (835)
+ ..||.. +. |. ..++
T Consensus 628 ~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~m 707 (941)
T KOG0389|consen 628 LKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKM 707 (941)
T ss_pred HHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHH
Confidence 0 000000 00 00 0000
Q ss_pred ----------cccCHH-----------------------------------------HHHHHHHHHHhcCCeEEEEecCc
Q 003260 474 ----------SAFSKE-----------------------------------------KVISAIKYELDRGGQVFYVLPRI 502 (835)
Q Consensus 474 ----------~~~~~~-----------------------------------------~l~~~i~~~l~~ggqvlVf~n~v 502 (835)
...+.+ .+...+-.....|.+|++|..-.
T Consensus 708 ak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFT 787 (941)
T KOG0389|consen 708 AKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFT 787 (941)
T ss_pred HHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHH
Confidence 000000 11111222224568899998777
Q ss_pred cChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCC--eeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHH
Q 003260 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGA--IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 580 (835)
Q Consensus 503 ~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~--~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~ 580 (835)
.-.+-+.-.|..+ +++...+.|...-.+|+.++..|...+ .-.|++|...+-|||+..+|+||++|.+ |++-.-.
T Consensus 788 qmLDILE~~L~~l--~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~d-FNP~dD~ 864 (941)
T KOG0389|consen 788 QMLDILEVVLDTL--GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDID-FNPYDDK 864 (941)
T ss_pred HHHHHHHHHHHhc--CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecC-CCCcccc
Confidence 6677777777777 899999999999999999999998764 3468899999999999999999999998 7888888
Q ss_pred HHhcccCCCC--CceEEEEEecCCCc
Q 003260 581 QLRGRVGRAD--KEAHAYLFYPDKSL 604 (835)
Q Consensus 581 Qr~GRaGR~g--~~G~ay~l~~~~~~ 604 (835)
|.--|+.|.| ++-.+|.|++...+
T Consensus 865 QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 865 QAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred hhHHHHHhhCCcceeEEEEEEecCcH
Confidence 9989999988 56788999998865
No 141
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.56 E-value=3.5e-14 Score=158.63 Aligned_cols=262 Identities=16% Similarity=0.222 Sum_probs=168.2
Q ss_pred EEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcC
Q 003260 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385 (835)
Q Consensus 306 ~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G 385 (835)
++-+|||.||||.-|+.- +...+..++--|.|.||.++|+++.+. |+.+-+++|... ... .-+|
T Consensus 194 i~H~GPTNSGKTy~ALqr----l~~aksGvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~----~~~---~~~~ 257 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRALQR----LKSAKSGVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEER----RFV---LDNG 257 (700)
T ss_pred EEEeCCCCCchhHHHHHH----HhhhccceecchHHHHHHHHHHHhhhc-----CCCcccccccee----eec---CCCC
Confidence 455899999999876544 444567889999999999999999874 788989988421 111 1112
Q ss_pred -CcceeeccHHHhhcccccCCccEEEEcCccccchhhH-----HHHhhh-cCCceEEEeecCCChhhHHHHHhcCCCcce
Q 003260 386 -HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK-----EKIASF-KISVDVLTLSATPIPRTLYLALTGFRDASL 458 (835)
Q Consensus 386 -~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~-----e~l~~l-~~~~~vL~lSATp~p~tl~~~~~g~~d~s~ 458 (835)
.+..+-+|-++..-. ..+++.||||+|.+...++ ..+..+ ...+++ .+-| ..+.+...-.
T Consensus 258 ~~a~hvScTVEM~sv~---~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHL---CGep--svldlV~~i~----- 324 (700)
T KOG0953|consen 258 NPAQHVSCTVEMVSVN---TPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHL---CGEP--SVLDLVRKIL----- 324 (700)
T ss_pred CcccceEEEEEEeecC---CceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhc---cCCc--hHHHHHHHHH-----
Confidence 245666666655422 3578999999998844332 222221 122332 2222 2222221110
Q ss_pred ecCCCCCccceeEEecccCHHHHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHH
Q 003260 459 ISTPPPERLPIKTHLSAFSKEKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEET 536 (835)
Q Consensus 459 I~~~p~~r~~v~~~~~~~~~~~l~~~i~~~l~--~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~v 536 (835)
....+...+..|- ..++-.+.+.+...++ +.|.++|-+ +++++-.+...+.+.. +.++++++|+++++.|.+.
T Consensus 325 --k~TGd~vev~~Ye-Rl~pL~v~~~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~g-~~k~aVIYGsLPPeTr~aQ 399 (700)
T KOG0953|consen 325 --KMTGDDVEVREYE-RLSPLVVEETALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKAG-NHKCAVIYGSLPPETRLAQ 399 (700)
T ss_pred --hhcCCeeEEEeec-ccCcceehhhhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHhc-CcceEEEecCCCCchhHHH
Confidence 0011122222221 1111111122222222 235554433 5567888888888873 4569999999999999999
Q ss_pred HHHhhc--CCeeEEEEcCcCCcCCCCCCccEEEEecCCCCC--------hhHHHHHhcccCCCC---CceEEEEEecCC
Q 003260 537 MEKFAQ--GAIKILICTNIVESGLDIQNANTIIVQDVQQFG--------LAQLYQLRGRVGRAD---KEAHAYLFYPDK 602 (835)
Q Consensus 537 l~~F~~--g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~s--------l~~l~Qr~GRaGR~g---~~G~ay~l~~~~ 602 (835)
-..|.+ ++++|||||+.+++|+|+. ++.||.++...|+ .+|..|.+|||||.| ..|.+-++..++
T Consensus 400 A~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 400 AALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred HHHhCCCCCccceEEeecccccccccc-eeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 999987 8999999999999999996 9999998876553 578899999999987 458887777554
No 142
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.55 E-value=4.3e-14 Score=133.24 Aligned_cols=131 Identities=36% Similarity=0.436 Sum_probs=99.6
Q ss_pred cEEEEccCCCcccHHHHHHHHHHHc--CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhh
Q 003260 305 DRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~a~l~~l~--~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l 382 (835)
+++++++||+|||.+++..+..... ..++++|++|++.++.|+.+.+...+.. +..+.++.+........ ..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~ 75 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQE----KL 75 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHH----HH
Confidence 5799999999999999888877765 4579999999999999999999875543 47788888865544332 22
Q ss_pred hcCCcceeeccHHHhhcccc-----cCCccEEEEcCccccchhhHHH-----HhhhcCCceEEEeecCC
Q 003260 383 KHGHLNIIVGTHSLLGSRVV-----YNNLGLLVVDEEQRFGVKQKEK-----IASFKISVDVLTLSATP 441 (835)
Q Consensus 383 ~~G~~dIIVgT~~~L~~~l~-----~~~l~llVIDEaHr~g~~~~e~-----l~~l~~~~~vL~lSATp 441 (835)
.....+|+++|+..+..... ...+++|||||+|.+....... ........+++++||||
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 23568999999997765332 3478999999999985543322 33345778899999997
No 143
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.55 E-value=1.4e-14 Score=126.02 Aligned_cols=77 Identities=34% Similarity=0.632 Sum_probs=72.6
Q ss_pred HHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCC
Q 003260 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 590 (835)
Q Consensus 511 ~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g 590 (835)
.|+.. ++.+..+||+++..+|+.+++.|.+++.+|||||+++++|+|+|++++||+++.+. ++.+|.|++||+||.|
T Consensus 2 ~L~~~--~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~-~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKK--GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPW-SPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHT--TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSES-SHHHHHHHHTTSSTTT
T ss_pred ChHHC--CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCC-CHHHHHHHhhcCCCCC
Confidence 45555 89999999999999999999999999999999999999999999999999999984 9999999999999986
No 144
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.54 E-value=4.8e-12 Score=149.44 Aligned_cols=116 Identities=17% Similarity=0.261 Sum_probs=83.4
Q ss_pred HHHHHHHHHh-cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhc----CCeeEEEEcCcCC
Q 003260 481 VISAIKYELD-RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQ----GAIKILICTNIVE 555 (835)
Q Consensus 481 l~~~i~~~l~-~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~----g~~~ILVaT~iie 555 (835)
+.+.+...+. .+|.++|.+.+...++.+++.|...++ +. ..+.|..+ .+...++.|++ |...||++|+.+.
T Consensus 458 ~~~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l~-~~-~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfw 533 (636)
T TIGR03117 458 VSLSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIP-AE-IVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAW 533 (636)
T ss_pred HHHHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhcC-CC-EEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccc
Confidence 4445555554 568999999999999999999988764 33 45566543 34567788886 4789999999999
Q ss_pred cCCCC--------C--CccEEEEecCCCCCh-------------------------hHHHHHhcccCCCCC---ceEEEE
Q 003260 556 SGLDI--------Q--NANTIIVQDVQQFGL-------------------------AQLYQLRGRVGRADK---EAHAYL 597 (835)
Q Consensus 556 ~GIDI--------p--~v~~VIi~d~p~~sl-------------------------~~l~Qr~GRaGR~g~---~G~ay~ 597 (835)
+|||+ | .++.||+...| |.+ -.+.|-+||.=|... .|...+
T Consensus 534 eGvDv~~~~~~p~~G~~Ls~ViI~kLP-F~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~i 612 (636)
T TIGR03117 534 TGIDLTHKPVSPDKDNLLTDLIITCAP-FGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHM 612 (636)
T ss_pred cccccCCccCCCCCCCcccEEEEEeCC-CCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEE
Confidence 99999 2 48889987776 221 135699999989864 465555
Q ss_pred EecC
Q 003260 598 FYPD 601 (835)
Q Consensus 598 l~~~ 601 (835)
+-+.
T Consensus 613 lD~R 616 (636)
T TIGR03117 613 LDGR 616 (636)
T ss_pred EeCC
Confidence 5433
No 145
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=9e-12 Score=149.87 Aligned_cols=132 Identities=21% Similarity=0.220 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCC
Q 003260 480 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559 (835)
Q Consensus 480 ~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GID 559 (835)
.+++.+.+....|.+|||-+.+++..+.+++.|... ++...++++.....+-+-|-++=+ .-.|-|||++++||.|
T Consensus 616 Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~--gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNMAGRGTD 691 (1112)
T PRK12901 616 AVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMR--KIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNMAGRGTD 691 (1112)
T ss_pred HHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHc--CCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccCcCCCcC
Confidence 455666666678999999999999999999999988 777777777754444333333222 3469999999999999
Q ss_pred CC--------CccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCC-CcCCHHHHHHHHHH
Q 003260 560 IQ--------NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK-SLLSDQALERLAAL 616 (835)
Q Consensus 560 Ip--------~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~-~~~~~~a~~rl~~i 616 (835)
|. +==+||....+. |..--.|.+||+||.|.+|.+-+|++-+ ++....+.+|+..+
T Consensus 692 IkLg~~V~e~GGL~VIgTerhe-SrRID~QLrGRaGRQGDPGsS~f~lSLEDdLmr~Fgs~ri~~~ 756 (1112)
T PRK12901 692 IKLSPEVKAAGGLAIIGTERHE-SRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKV 756 (1112)
T ss_pred cccchhhHHcCCCEEEEccCCC-cHHHHHHHhcccccCCCCCcceEEEEcccHHHHhhCcHHHHHH
Confidence 97 223666655554 6777889999999999999998888744 33333444454444
No 146
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.46 E-value=1.3e-12 Score=156.43 Aligned_cols=300 Identities=19% Similarity=0.238 Sum_probs=212.8
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCC
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 360 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~g 360 (835)
...|+|.++++.+.+ +..++++++|+|||||.++.++++.. ..-.++++++|.-+.+..++..+..+|+...|
T Consensus 1143 ~~n~iqtqVf~~~y~------~nd~v~vga~~gsgkt~~ae~a~l~~-~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G 1215 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYN------TNDNVLVGAPNGSGKTACAELALLRP-DTIGRAVYIAPLEEIADEQYRDWEKKFSKLLG 1215 (1674)
T ss_pred ccCCceEEEEeeeec------ccceEEEecCCCCchhHHHHHHhcCC-ccceEEEEecchHHHHHHHHHHHHHhhccccC
Confidence 348999999887753 45789999999999999999888762 33468999999999999999999999999889
Q ss_pred cEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchh----------hHHHHhhhcC
Q 003260 361 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVK----------QKEKIASFKI 430 (835)
Q Consensus 361 i~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~----------~~e~l~~l~~ 430 (835)
..+..++|..+..-+ -+.. .+|+|+||+.+...-....+++.|.||.|..|.. .+..-..+.+
T Consensus 1216 ~~~~~l~ge~s~~lk-----l~~~--~~vii~tpe~~d~lq~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k 1288 (1674)
T KOG0951|consen 1216 LRIVKLTGETSLDLK-----LLQK--GQVIISTPEQWDLLQSIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEK 1288 (1674)
T ss_pred ceEEecCCccccchH-----Hhhh--cceEEechhHHHHHhhhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHh
Confidence 999999997665432 2222 4899999986643235678899999999987521 1222234456
Q ss_pred CceEEEeecCCChhhHHHHHhcCCCcceecCCCCCcc-ceeEEecccC-----------HHHHHHHHHHHHhcCCeEEEE
Q 003260 431 SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL-PIKTHLSAFS-----------KEKVISAIKYELDRGGQVFYV 498 (835)
Q Consensus 431 ~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~-~v~~~~~~~~-----------~~~l~~~i~~~l~~ggqvlVf 498 (835)
..+++.+|..... ...+.|.....++..+|..|. |....+..++ ..-...++.+....+...+||
T Consensus 1289 ~ir~v~ls~~lan---a~d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf 1365 (1674)
T KOG0951|consen 1289 KIRVVALSSSLAN---ARDLIGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVF 1365 (1674)
T ss_pred heeEEEeehhhcc---chhhccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEE
Confidence 7888888876521 122245444455555555443 4333332221 123466777777778899999
Q ss_pred ecCccChHHHHHHHHhhC--------------------CCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCC
Q 003260 499 LPRIKGLEEPMDFLQQAF--------------------PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558 (835)
Q Consensus 499 ~n~v~~~e~l~~~L~~~~--------------------p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GI 558 (835)
+|+.+++..++..+-... ...+..+-|-+|+..+.+.+-.-|..|.+.|+|...- ..|+
T Consensus 1366 ~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~ 1444 (1674)
T KOG0951|consen 1366 LPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGT 1444 (1674)
T ss_pred eccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccc
Confidence 999887665543221110 0123444499999999999999999999999988776 7888
Q ss_pred CCCCccEEEEecCC----------CCChhHHHHHhcccCCCCCceEEEEEecCC
Q 003260 559 DIQNANTIIVQDVQ----------QFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 559 DIp~v~~VIi~d~p----------~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
-.. ++.||+.+.. .|..+.+.|++|++.| .|.|++++...
T Consensus 1445 ~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~ 1494 (1674)
T KOG0951|consen 1445 KLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTP 1494 (1674)
T ss_pred ccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCc
Confidence 776 7777765432 2467899999999988 47888887653
No 147
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.46 E-value=6.6e-12 Score=138.88 Aligned_cols=316 Identities=13% Similarity=0.122 Sum_probs=201.4
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCC
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 360 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~g 360 (835)
.+-|+|.+.+...++ ++..+++..+.|.|||.+|+..+.... .....+|+||.. |--.|.+.+..++....
T Consensus 198 ~LlPFQreGv~faL~------RgGR~llADeMGLGKTiQAlaIA~yyr-aEwplliVcPAs-vrftWa~al~r~lps~~- 268 (689)
T KOG1000|consen 198 RLLPFQREGVIFALE------RGGRILLADEMGLGKTIQALAIARYYR-AEWPLLIVCPAS-VRFTWAKALNRFLPSIH- 268 (689)
T ss_pred hhCchhhhhHHHHHh------cCCeEEEecccccchHHHHHHHHHHHh-hcCcEEEEecHH-HhHHHHHHHHHhccccc-
Confidence 567899999887764 366799999999999999976655443 345688999974 55678888887665542
Q ss_pred cEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc---ccccCCccEEEEcCccccchhhHHHH----hhhcCCce
Q 003260 361 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS---RVVYNNLGLLVVDEEQRFGVKQKEKI----ASFKISVD 433 (835)
Q Consensus 361 i~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~---~l~~~~l~llVIDEaHr~g~~~~e~l----~~l~~~~~ 433 (835)
.|.++.+..+.. ..+.. ...|.|.+++.+.. .+.-..+++||+||.|.+-....... .-+....+
T Consensus 269 -pi~vv~~~~D~~------~~~~t-~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akh 340 (689)
T KOG1000|consen 269 -PIFVVDKSSDPL------PDVCT-SNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKH 340 (689)
T ss_pred -ceEEEecccCCc------ccccc-CCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhh
Confidence 244444433221 11111 13577888877653 33445699999999999854333222 22334568
Q ss_pred EEEeecCCC---hhh----------------HHHHHhcC--------CCcc------------------------ee-cC
Q 003260 434 VLTLSATPI---PRT----------------LYLALTGF--------RDAS------------------------LI-ST 461 (835)
Q Consensus 434 vL~lSATp~---p~t----------------l~~~~~g~--------~d~s------------------------~I-~~ 461 (835)
+|++|+||. |.. ..++..+. .|.+ ++ ..
T Consensus 341 vILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qL 420 (689)
T KOG1000|consen 341 VILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQL 420 (689)
T ss_pred eEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999984 211 11111110 0000 01 12
Q ss_pred CCCCccceeEEecccC--------------------------------------HHHHHHHHHH---HH-hcCCeEEEEe
Q 003260 462 PPPERLPIKTHLSAFS--------------------------------------KEKVISAIKY---EL-DRGGQVFYVL 499 (835)
Q Consensus 462 ~p~~r~~v~~~~~~~~--------------------------------------~~~l~~~i~~---~l-~~ggqvlVf~ 499 (835)
||. |..|........ ...+.+.|.. .. ..+.+.+||+
T Consensus 421 PpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFa 499 (689)
T KOG1000|consen 421 PPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFA 499 (689)
T ss_pred Ccc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEe
Confidence 333 332221111000 0011111111 01 2246889999
Q ss_pred cCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcC-CeeE-EEEcCcCCcCCCCCCccEEEEecCCCCChh
Q 003260 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIKI-LICTNIVESGLDIQNANTIIVQDVQQFGLA 577 (835)
Q Consensus 500 n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g-~~~I-LVaT~iie~GIDIp~v~~VIi~d~p~~sl~ 577 (835)
....-.+.+...+.+. ++....+.|..++.+|+...+.|... +..| +++-+.++.|+++..++.|+....+ |++.
T Consensus 500 HH~~vLd~Iq~~~~~r--~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~-wnPg 576 (689)
T KOG1000|consen 500 HHQIVLDTIQVEVNKR--KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELH-WNPG 576 (689)
T ss_pred hhHHHHHHHHHHHHHc--CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEec-CCCc
Confidence 8888888888888888 78889999999999999999999865 4554 6678899999999999999988887 6999
Q ss_pred HHHHHhcccCCCCCceEE--EEEecCCCcCCHHHHHHHHHHH
Q 003260 578 QLYQLRGRVGRADKEAHA--YLFYPDKSLLSDQALERLAALE 617 (835)
Q Consensus 578 ~l~Qr~GRaGR~g~~G~a--y~l~~~~~~~~~~a~~rl~~i~ 617 (835)
-++|.=-|+.|.|+..-+ |.|+.++.........-.+.+.
T Consensus 577 vLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~ 618 (689)
T KOG1000|consen 577 VLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLD 618 (689)
T ss_pred eEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHH
Confidence 999999999999976544 4455555443333333333333
No 148
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.45 E-value=8.1e-11 Score=142.48 Aligned_cols=71 Identities=21% Similarity=0.254 Sum_probs=59.2
Q ss_pred CCCCCHhHHHHHHHHHHhhhcC--CCCCcEEEEccCCCcccHHHHHHHHHH-HcCCCEEEEEcccHHHHHHHHH
Q 003260 279 PYEPTPDQKKAFLDVERDLTER--ETPMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 279 ~~~ptp~Q~~AI~~il~dl~~~--~~~~d~Ll~a~TGsGKT~val~a~l~~-l~~g~qvlVLvPtr~LA~Q~~~ 349 (835)
.|+.+|-|.+-+..|.+.+.+. ..+..++|.|+||+|||++||+|+... ...+++|+|-+.|+.|-.|+..
T Consensus 23 ~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~~ 96 (697)
T PRK11747 23 GFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLVS 96 (697)
T ss_pred CCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHh
Confidence 4899999999999999888531 114668899999999999999998754 4478999999999999999864
No 149
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.44 E-value=2.8e-11 Score=146.39 Aligned_cols=316 Identities=18% Similarity=0.138 Sum_probs=182.9
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhhhcC-CCCCcEEEEccCCCcccHHHHHHHHHHHc--CCCEEEEEcccHHHHHHH
Q 003260 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTER-ETPMDRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 271 ~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~-~~~~d~Ll~a~TGsGKT~val~a~l~~l~--~g~qvlVLvPtr~LA~Q~ 347 (835)
.+.|...-.-.-..+|-+|++.+..--..+ ..|--.|-.|.||||||++=...+..... .|.+..|-.-.|.|..|.
T Consensus 398 hk~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQT 477 (1110)
T TIGR02562 398 HKYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQT 477 (1110)
T ss_pred hhhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccc
Confidence 344543333345678999998876532222 22334455799999999986555443332 355888888999999999
Q ss_pred HHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh-------------------------------hhcC-----------
Q 003260 348 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM-------------------------------IKHG----------- 385 (835)
Q Consensus 348 ~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~-------------------------------l~~G----------- 385 (835)
-..++++++-- +-..+++.|+....+-.+..+. +.+|
T Consensus 478 Gda~r~rL~L~-~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k 556 (1110)
T TIGR02562 478 GHALKTRLNLS-DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDK 556 (1110)
T ss_pred hHHHHHhcCCC-ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChh
Confidence 99999887533 3556666665322111100000 0000
Q ss_pred -----CcceeeccHHHhhccc-ccC---------C--ccEEEEcCccccchhhHHHHhhh-----cCCceEEEeecCCCh
Q 003260 386 -----HLNIIVGTHSLLGSRV-VYN---------N--LGLLVVDEEQRFGVKQKEKIASF-----KISVDVLTLSATPIP 443 (835)
Q Consensus 386 -----~~dIIVgT~~~L~~~l-~~~---------~--l~llVIDEaHr~g~~~~e~l~~l-----~~~~~vL~lSATp~p 443 (835)
..+|+|||...+.... .++ . -+.|||||+|-+.......|..+ .-+.+|++||||.++
T Consensus 557 ~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~ 636 (1110)
T TIGR02562 557 EKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPP 636 (1110)
T ss_pred hhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCH
Confidence 1468899986554321 111 1 25699999999866554444332 257899999999987
Q ss_pred hhHHHH-------------HhcCCCcc--eec-----------------------------------CCCCCccceeEEe
Q 003260 444 RTLYLA-------------LTGFRDAS--LIS-----------------------------------TPPPERLPIKTHL 473 (835)
Q Consensus 444 ~tl~~~-------------~~g~~d~s--~I~-----------------------------------~~p~~r~~v~~~~ 473 (835)
...... ..+....+ +.. ..|..|......+
T Consensus 637 ~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~ 716 (1110)
T TIGR02562 637 ALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSL 716 (1110)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeec
Confidence 543211 11111111 100 0111111100001
Q ss_pred cccC--H----HHHHHHHHH----HHh--------cCCeE---EEEecCccChHHHHHHHHhhCCC----CeEEEEeCCC
Q 003260 474 SAFS--K----EKVISAIKY----ELD--------RGGQV---FYVLPRIKGLEEPMDFLQQAFPG----VDIAIAHGQQ 528 (835)
Q Consensus 474 ~~~~--~----~~l~~~i~~----~l~--------~ggqv---lVf~n~v~~~e~l~~~L~~~~p~----~~v~~lhg~m 528 (835)
.... . ..+.+.+.+ ... .+.+| +|-++++..+-.++..|....+. +.+.++|++.
T Consensus 717 ~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~ 796 (1110)
T TIGR02562 717 SSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQD 796 (1110)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccC
Confidence 1110 1 112222222 211 12222 56677788888888887766532 4588999998
Q ss_pred CHHHHHHHHHHh----------------------hc----CCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHH
Q 003260 529 YSRQLEETMEKF----------------------AQ----GAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQL 582 (835)
Q Consensus 529 ~~~ere~vl~~F----------------------~~----g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr 582 (835)
.-..|..+.+.. .+ +...|+|+|+++|.|+|+. .+.+|..-+ ++.+++|+
T Consensus 797 ~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~~~~~---~~~sliQ~ 872 (1110)
T TIGR02562 797 PLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAIADPS---SMRSIIQL 872 (1110)
T ss_pred hHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeeeeccC---cHHHHHHH
Confidence 766666555432 12 4678999999999999997 777774332 57899999
Q ss_pred hcccCCCCC
Q 003260 583 RGRVGRADK 591 (835)
Q Consensus 583 ~GRaGR~g~ 591 (835)
+||+.|.+.
T Consensus 873 aGR~~R~~~ 881 (1110)
T TIGR02562 873 AGRVNRHRL 881 (1110)
T ss_pred hhccccccc
Confidence 999999874
No 150
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.40 E-value=1.1e-12 Score=113.43 Aligned_cols=81 Identities=36% Similarity=0.624 Sum_probs=75.1
Q ss_pred HHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhccc
Q 003260 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRV 586 (835)
Q Consensus 507 ~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRa 586 (835)
.+++.|+.. ++.+..+||+++..+|..+++.|.++..+|||+|+++++|+|+|++++||+++.+ ++..+|.|++||+
T Consensus 2 ~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~-~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKEL--GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLP-WSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHC--CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCC-CCHHHHHHhhccc
Confidence 456677776 7899999999999999999999999999999999999999999999999999998 5999999999999
Q ss_pred CCCC
Q 003260 587 GRAD 590 (835)
Q Consensus 587 GR~g 590 (835)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9975
No 151
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.39 E-value=2.3e-12 Score=143.75 Aligned_cols=309 Identities=15% Similarity=0.094 Sum_probs=204.0
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc--CCCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~--~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~ 358 (835)
....+|.+++..+-+ +.+.++.-.|-+||.+++..++..... .....++..|+.++++...+-+.-.+...
T Consensus 286 ~~~~~~~~~~~~~~~-------G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I 358 (1034)
T KOG4150|consen 286 SGIAISLELLKFASE-------GRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVI 358 (1034)
T ss_pred chhhhhHHHHhhhhh-------cccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEeh
Confidence 445789999877643 567888999999999998777665432 34567888999999887544433222222
Q ss_pred CCcE---EEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----cccc----CCccEEEEcCccccc----hh--
Q 003260 359 PDIK---VGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVY----NNLGLLVVDEEQRFG----VK-- 420 (835)
Q Consensus 359 ~gi~---V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~----~~l~llVIDEaHr~g----~~-- 420 (835)
+..+ |....+. +..+. ..+..-..+++++.|..... .+.+ -.+.++++||+|-+. ..
T Consensus 359 ~~~K~A~V~~~D~~-sE~~~----~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~ 433 (1034)
T KOG4150|consen 359 KARKSAYVEMSDKL-SETTK----SALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQ 433 (1034)
T ss_pred hhhhcceeecccCC-CchhH----HHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHH
Confidence 2222 2222222 22222 22222347899988865532 2222 245679999999742 21
Q ss_pred -hHHHHhhh------cCCceEEEeecCCChhhHHH-HHhcCCCcceecCC--CCCccceeEEe-c--ccC----H---HH
Q 003260 421 -QKEKIASF------KISVDVLTLSATPIPRTLYL-ALTGFRDASLISTP--PPERLPIKTHL-S--AFS----K---EK 480 (835)
Q Consensus 421 -~~e~l~~l------~~~~~vL~lSATp~p~tl~~-~~~g~~d~s~I~~~--p~~r~~v~~~~-~--~~~----~---~~ 480 (835)
+...+..+ ..+.+++-.|||...++..+ .+.++....++... |....-...+- . +.. . .+
T Consensus 434 ~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E 513 (1034)
T KOG4150|consen 434 DQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVE 513 (1034)
T ss_pred HHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHH
Confidence 12223222 35789999999986666544 45566666666543 22211111110 0 000 1 12
Q ss_pred HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC----CCC--eEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcC
Q 003260 481 VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF----PGV--DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIV 554 (835)
Q Consensus 481 l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~----p~~--~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~ii 554 (835)
....+.+.+..+-+++.||+.++-|+-+....++.+ |+. .|..+.|+-..++|.++..++-.|+..-+|+|+.+
T Consensus 514 ~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNAL 593 (1034)
T KOG4150|consen 514 VSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNAL 593 (1034)
T ss_pred HHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchh
Confidence 223344555678899999999988887766655543 221 34556789999999999999999999999999999
Q ss_pred CcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCC
Q 003260 555 ESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 555 e~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
+-||||..++.|+..+.|- |++.++|..||+||.++...+..+....
T Consensus 594 ELGIDIG~LDAVl~~GFP~-S~aNl~QQ~GRAGRRNk~SLavyva~~~ 640 (1034)
T KOG4150|consen 594 ELGIDIGHLDAVLHLGFPG-SIANLWQQAGRAGRRNKPSLAVYVAFLG 640 (1034)
T ss_pred hhccccccceeEEEccCch-hHHHHHHHhccccccCCCceEEEEEecc
Confidence 9999999999999999995 9999999999999999888876655443
No 152
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.36 E-value=8.6e-12 Score=147.40 Aligned_cols=310 Identities=16% Similarity=0.220 Sum_probs=206.1
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHH---cCCCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV---SAGKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l---~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~ 357 (835)
++.++|...+..... |. +..-+-++...+|.|||.+-+..+...+ ...+.-+|+||+-.|.+ |..+|.. +.
T Consensus 394 ~Lk~YQl~GLqWmVS-Ly--NNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~k-Wa- 467 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVS-LY--NNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPK-WA- 467 (1157)
T ss_pred CCchhhhhhhHHHhh-cc--CCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhccc-cc-
Confidence 788999999987764 32 2344568999999999998654444332 33456899999999886 4555554 22
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccc-c--CCccEEEEcCccccchhhHHH---HhhhcCC
Q 003260 358 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV-Y--NNLGLLVVDEEQRFGVKQKEK---IASFKIS 431 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~-~--~~l~llVIDEaHr~g~~~~e~---l~~l~~~ 431 (835)
|.+......| ++.++......+..|+.+|+++|++.+.++-. + -++.++||||.||+...+... +......
T Consensus 468 -PSv~~i~YkG--tp~~R~~l~~qir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~ 544 (1157)
T KOG0386|consen 468 -PSVQKIQYKG--TPQQRSGLTKQQRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRA 544 (1157)
T ss_pred -cceeeeeeeC--CHHHHhhHHHHHhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHHHHHhhccccc
Confidence 3455555555 77788888888888999999999987765322 2 356789999999996654433 2222234
Q ss_pred ceEEEeecCCChhhHHHHH-----------------hcCCCcceecC---------------------------------
Q 003260 432 VDVLTLSATPIPRTLYLAL-----------------TGFRDASLIST--------------------------------- 461 (835)
Q Consensus 432 ~~vL~lSATp~p~tl~~~~-----------------~g~~d~s~I~~--------------------------------- 461 (835)
...+++|+||....+...+ ..|.+.++-.+
T Consensus 545 q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKke 624 (1157)
T KOG0386|consen 545 QRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKE 624 (1157)
T ss_pred hhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHH
Confidence 5567899998532211000 00000000000
Q ss_pred ----CCC------------------------CccceeE--------------------------------Ee-cccCH--
Q 003260 462 ----PPP------------------------ERLPIKT--------------------------------HL-SAFSK-- 478 (835)
Q Consensus 462 ----~p~------------------------~r~~v~~--------------------------------~~-~~~~~-- 478 (835)
.|. ....+.. .+ ..+..
T Consensus 625 VE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~d 704 (1157)
T KOG0386|consen 625 VEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKD 704 (1157)
T ss_pred HhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhH
Confidence 000 0000000 00 00011
Q ss_pred -------HHHHHHHHHHH-hcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCC---eeE
Q 003260 479 -------EKVISAIKYEL-DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGA---IKI 547 (835)
Q Consensus 479 -------~~l~~~i~~~l-~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~---~~I 547 (835)
..+++-+.-.+ .-|+.|+.||....-...+..+|.-. +++...+.|....++|...+..|..-. ...
T Consensus 705 L~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~--~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~F 782 (1157)
T KOG0386|consen 705 LVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIR--EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIF 782 (1157)
T ss_pred HHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhh--hhheeeecCCcchhhHHHHHHHhcCCCCceeee
Confidence 01122222112 34789999998887777888888766 889999999999999999999998764 456
Q ss_pred EEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCc--eEEEEEecCC
Q 003260 548 LICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE--AHAYLFYPDK 602 (835)
Q Consensus 548 LVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~--G~ay~l~~~~ 602 (835)
|.+|...+.|+|+..+++||++|.+ |++-+..|+--|+.|.|+. ..++.+.+-.
T Consensus 783 llstragglglNlQtadtviifdsd-wnp~~d~qaqdrahrigq~~evRv~rl~tv~ 838 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSD-WNPHQDLQAQDRAHRIGQKKEVRVLRLITVN 838 (1157)
T ss_pred eeeecccccccchhhcceEEEecCC-CCchhHHHHHHHHHHhhchhheeeeeeehhh
Confidence 8899999999999999999999998 6999999999999999955 4445555444
No 153
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=99.32 E-value=3e-12 Score=117.06 Aligned_cols=97 Identities=33% Similarity=0.470 Sum_probs=72.7
Q ss_pred CCCCCCcccccccccEEEeeEEEeecCCCCCccceEEEEEcCCC-cccChhhHhHHHhhhcCCCCCCchHHHhccCCCcH
Q 003260 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGM-AKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTA 231 (835)
Q Consensus 153 ~~~~gd~vvh~~~Gig~~~g~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~~~~~~~~~~y~~~~~~~~~~~l~~l~~~~~ 231 (835)
++++||+|||.+||+|+|.|++..... +..+||+.|+|++++ .++|++++. .+.||.++.+. . +.|++|+. ..
T Consensus 1 mf~~GD~VVh~~~Gv~~i~~i~~~~~~--~~~~~yy~L~~~~~~~i~vPv~~~~-~i~R~v~~~~~-~-~~l~~L~~-~~ 74 (98)
T PF02559_consen 1 MFKIGDYVVHPNHGVGRIEGIEEIEFG--GEKQEYYVLEYADDDTIYVPVDNAD-KIGRYVGSREE-A-PLLDKLGS-IE 74 (98)
T ss_dssp T--TTSEEEETTTEEEEEEEEEEEECT--TEEEEEEEEEECCCEEEEEECCCGG-GEEE--SS-SS-S------TT--SH
T ss_pred CCCCCCEEEECCCceEEEEEEEEEeeC--CeeEEEEEEEECCCCEEEEEcCChh-hccCCcCCccc-h-hHHHHcCC-hh
Confidence 478999999999999999999854432 678999999999996 789999974 56799987654 3 89999986 66
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003260 232 WERRKTKGKVAIQKMVVDLMELYL 255 (835)
Q Consensus 232 w~~~k~~~~~~~~~~~~~l~~l~~ 255 (835)
|++++.+.+......+.++++.|+
T Consensus 75 W~~r~~~lk~~~~~~~~~lik~l~ 98 (98)
T PF02559_consen 75 WKKRKRKLKSGDIEEAAELIKLLA 98 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHhC
Confidence 999999999999999999998874
No 154
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.27 E-value=3.2e-10 Score=137.03 Aligned_cols=73 Identities=25% Similarity=0.276 Sum_probs=61.3
Q ss_pred CCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHH-cCCCEEEEEcccHHHHHHHHHHHHH
Q 003260 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 278 f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l-~~g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
.++++++.|.+.+..+...+. .+...++.||||+|||++|+.|++... ..+++++|.++|+.|-.|..++...
T Consensus 12 ~~~~~r~~Q~~~~~~v~~a~~---~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 12 PGFEPRPEQREMAEAVAEALK---GGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CCCCCCHHHHHHHHHHHHHHc---CCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcc
Confidence 456999999999999987553 345599999999999999999988764 3458999999999999998887654
No 155
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=1.6e-09 Score=131.96 Aligned_cols=75 Identities=23% Similarity=0.305 Sum_probs=65.4
Q ss_pred HhCCCCC-CHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc-CC--CEEEEEcccHHHHHHHHHHH
Q 003260 276 AQFPYEP-TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AG--KQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 276 ~~f~~~p-tp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~-~g--~qvlVLvPtr~LA~Q~~~~~ 351 (835)
-.|||++ +|.|.+.+..+.+.+.+ +.+.++.+|||+|||++.|.+++.... .+ .++++.+.|..=..|..+++
T Consensus 4 v~FPy~~~y~~Q~~~m~~v~~~l~~---~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 4 VYFPYEKIYPEQRSYMRDLKRSLDR---GDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred eecCCCCCCHHHHHHHHHHHHHhcc---CCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHH
Confidence 3589987 99999999999998743 578999999999999999999988765 33 68999999999999999999
Q ss_pred HH
Q 003260 352 SE 353 (835)
Q Consensus 352 ~~ 353 (835)
+.
T Consensus 81 k~ 82 (705)
T TIGR00604 81 RK 82 (705)
T ss_pred Hh
Confidence 86
No 156
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.23 E-value=4.8e-10 Score=128.67 Aligned_cols=104 Identities=21% Similarity=0.285 Sum_probs=81.3
Q ss_pred HHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhc--C-CeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhc
Q 003260 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQ--G-AIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRG 584 (835)
Q Consensus 508 l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~--g-~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~G 584 (835)
+...|++. +.....+||+....+|+.+++.|.. | ....|++-...+.|+|+-++|++|..|+. |+++--.|..-
T Consensus 762 v~~hi~~~--g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlH-WNPaLEqQAcD 838 (901)
T KOG4439|consen 762 VRKHIQKG--GHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLH-WNPALEQQACD 838 (901)
T ss_pred HHHHHhhC--CeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecc-cCHHHHHHHHH
Confidence 33445554 6778889999999999999999974 3 34456788889999999999999999997 79998899999
Q ss_pred ccCCCCCc--eEEEEEecCCCcCCHHHHHHHHHHHHH
Q 003260 585 RVGRADKE--AHAYLFYPDKSLLSDQALERLAALEEC 619 (835)
Q Consensus 585 RaGR~g~~--G~ay~l~~~~~~~~~~a~~rl~~i~~~ 619 (835)
|+.|.|+. -+.|.|...+.+ .+|+..+++.
T Consensus 839 RIYR~GQkK~V~IhR~~~~gTv-----EqrV~~LQdk 870 (901)
T KOG4439|consen 839 RIYRMGQKKDVFIHRLMCKGTV-----EQRVKSLQDK 870 (901)
T ss_pred HHHHhcccCceEEEEEEecCcH-----HHHHHHHHHH
Confidence 99999955 455567766643 4566666554
No 157
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.22 E-value=8.6e-11 Score=127.15 Aligned_cols=155 Identities=19% Similarity=0.263 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHhh------hcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCC-----CEEEEEcccHHHHHHHHHHHHH
Q 003260 285 DQKKAFLDVERDL------TERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-----KQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 285 ~Q~~AI~~il~dl------~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g-----~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
+|.+|+..++.-. .........|++.++|+|||..++..+......+ ..+||++|. .+..||..++..
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 6899998887643 1123457889999999999999877665333222 259999999 777899999998
Q ss_pred hhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhh-----c---ccccCCccEEEEcCccccch---hhH
Q 003260 354 RFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-----S---RVVYNNLGLLVVDEEQRFGV---KQK 422 (835)
Q Consensus 354 ~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~-----~---~l~~~~l~llVIDEaHr~g~---~~~ 422 (835)
.+... ..++..+.+.... . ....-.....+++|+|++.+. . .+.--++++||+||+|.+.. ...
T Consensus 80 ~~~~~-~~~v~~~~~~~~~---~-~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~ 154 (299)
T PF00176_consen 80 WFDPD-SLRVIIYDGDSER---R-RLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRY 154 (299)
T ss_dssp HSGT--TS-EEEESSSCHH---H-HTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHH
T ss_pred ccccc-ccccccccccccc---c-cccccccccceeeeccccccccccccccccccccccceeEEEeccccccccccccc
Confidence 65332 4678888776411 1 111112245789999999888 1 22224589999999999842 233
Q ss_pred HHHhhhcCCceEEEeecCCChhhH
Q 003260 423 EKIASFKISVDVLTLSATPIPRTL 446 (835)
Q Consensus 423 e~l~~l~~~~~vL~lSATp~p~tl 446 (835)
..+..+. ...++++||||.+...
T Consensus 155 ~~l~~l~-~~~~~lLSgTP~~n~~ 177 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTPIQNSL 177 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-SSSGS
T ss_pred ccccccc-cceEEeeccccccccc
Confidence 4455543 6778889999976543
No 158
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.17 E-value=2.1e-11 Score=142.18 Aligned_cols=370 Identities=19% Similarity=0.226 Sum_probs=220.7
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHHcCC-----CEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVVSAG-----KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l~~g-----~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~ 378 (835)
.-+++-+.||+|||..+..-++..+..+ ..+.+-.|++.-+..+++++...-+.-.+-.|++-.++.+...+.
T Consensus 394 ~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prp-- 471 (1282)
T KOG0921|consen 394 RVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRP-- 471 (1282)
T ss_pred ceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccccccccccc--
Confidence 4578899999999999877777765442 356788899999999999887654443456777777776654422
Q ss_pred HHhhhcCCcceeeccHHHhhccc--ccCCccEEEEcCccccchhh---HHHH---hhhcCCceEEEeecCCChhhHHHHH
Q 003260 379 LDMIKHGHLNIIVGTHSLLGSRV--VYNNLGLLVVDEEQRFGVKQ---KEKI---ASFKISVDVLTLSATPIPRTLYLAL 450 (835)
Q Consensus 379 l~~l~~G~~dIIVgT~~~L~~~l--~~~~l~llVIDEaHr~g~~~---~e~l---~~l~~~~~vL~lSATp~p~tl~~~~ 450 (835)
.--|.++|-+-+.+.+ -+....++|+||.|++.+.. ...+ ....+..++++||||.....+...+
T Consensus 472 -------yg~i~fctvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdTd~f~~~f 544 (1282)
T KOG0921|consen 472 -------YGSIMFCTVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDTDLFTNFF 544 (1282)
T ss_pred -------ccceeeeccchhhhhhhhcccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccchhhhhhhh
Confidence 1247888887665432 35677899999999974422 2222 2223566777888886432221111
Q ss_pred hcCCCc-------------------ceecCCCCCccceeEE-----ecc-----------c-------------------
Q 003260 451 TGFRDA-------------------SLISTPPPERLPIKTH-----LSA-----------F------------------- 476 (835)
Q Consensus 451 ~g~~d~-------------------s~I~~~p~~r~~v~~~-----~~~-----------~------------------- 476 (835)
....+. ..... |....+.+.+ ... .
T Consensus 545 ~~~p~~~~~grt~pvq~F~led~~~~~~~v-p~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~ 623 (1282)
T KOG0921|consen 545 SSIPDVTVHGRTFPVQSFFLEDIIQMTQFV-PSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEK 623 (1282)
T ss_pred ccccceeeccccccHHHHHHHHhhhhhhcc-CCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhh
Confidence 111110 00001 1111110000 000 0
Q ss_pred -CHHHHHHHHHHHH-hc--CCeEEEEecCccChHHHHHHHHhh--C---CCCeEEEEeCCCCHHHHHHHHHHhhcCCeeE
Q 003260 477 -SKEKVISAIKYEL-DR--GGQVFYVLPRIKGLEEPMDFLQQA--F---PGVDIAIAHGQQYSRQLEETMEKFAQGAIKI 547 (835)
Q Consensus 477 -~~~~l~~~i~~~l-~~--ggqvlVf~n~v~~~e~l~~~L~~~--~---p~~~v~~lhg~m~~~ere~vl~~F~~g~~~I 547 (835)
....+.+++...+ .+ .+-+++|.+.-..+-.++..|... + ..+.+...|++....++.++++....|..++
T Consensus 624 d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~ki 703 (1282)
T KOG0921|consen 624 DIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKI 703 (1282)
T ss_pred cchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCccccccccc
Confidence 0012333333322 22 367899999888888888776543 1 2357888999999999999999999999999
Q ss_pred EEEcCcCCcCCCCCCccEEEEecCCC-----------------CChhHHHHHhcccCCCCCceEEEEEecCCCcCCHHHH
Q 003260 548 LICTNIVESGLDIQNANTIIVQDVQQ-----------------FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQAL 610 (835)
Q Consensus 548 LVaT~iie~GIDIp~v~~VIi~d~p~-----------------~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~ 610 (835)
+++|.+++..+.+.++..||+.+... .+.....||.||+||. +.|+|+.++..-
T Consensus 704 i~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~a-------- 774 (1282)
T KOG0921|consen 704 ILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRA-------- 774 (1282)
T ss_pred ccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHH--------
Confidence 99999999999999988888644321 0234678999999998 789999887532
Q ss_pred HHHHHHHHHh------hcccchhhhhhhhccccCCCcccccccCCc-c-cchHHHHHHHHHHHHhcccccccccccCcce
Q 003260 611 ERLAALEECR------ELGQGFQLAEKDMGIRGFGTIFGEQQTGDV-G-NVGVDLFFEMLFESLSKVDEHCVISVPYKSV 682 (835)
Q Consensus 611 ~rl~~i~~~~------~l~sg~~la~~dl~irg~g~~lg~~q~g~~-~-~vg~~~y~~~l~~ai~~~~~~~~~~~~~g~~ 682 (835)
|+.+++++. .......+..+-+.+-..+.+++....-.+ + .+..+.-+ ....+++... +.+++|..
T Consensus 775 -rF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l----~~m~~ld~n~-elt~lg~~ 848 (1282)
T KOG0921|consen 775 -RFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVL----REMGALDAND-ELTPLGRM 848 (1282)
T ss_pred -HHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHH----HHhhhhhccC-cccchhhh
Confidence 233332220 000112222222222224444433321111 1 12222221 1222333222 35678899
Q ss_pred EEeeecCCCCcccccc
Q 003260 683 QIDININPRLPSEYIN 698 (835)
Q Consensus 683 ~~~l~idp~~~~~~i~ 698 (835)
.+.+|+.|.+.+.++.
T Consensus 849 la~l~iep~~~k~~~l 864 (1282)
T KOG0921|consen 849 LARLPIEPRIGKMMIL 864 (1282)
T ss_pred hhhccCcccccceeee
Confidence 9999999999888876
No 159
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.11 E-value=6.3e-09 Score=123.58 Aligned_cols=276 Identities=15% Similarity=0.209 Sum_probs=168.0
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHH-cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhh
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l-~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l 382 (835)
.-.+|-+|.|||||.+.+.++...+ ..+..++++.-++.|+.+.+.+|+.. .++|.. .+..... . . +
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~--~l~gFv-~Y~d~~~-~-----~---i 117 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKA--GLSGFV-NYLDSDD-Y-----I---I 117 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhc--CCCcce-eeecccc-c-----c---c
Confidence 3468899999999998877766654 45789999999999999999998752 222222 2221110 0 0 1
Q ss_pred hcCCcc-eeeccHHHhhcc-cccCCccEEEEcCcccc-----ch--hhHHH----Hhh-hcCCceEEEeecCCChhhHHH
Q 003260 383 KHGHLN-IIVGTHSLLGSR-VVYNNLGLLVVDEEQRF-----GV--KQKEK----IAS-FKISVDVLTLSATPIPRTLYL 448 (835)
Q Consensus 383 ~~G~~d-IIVgT~~~L~~~-l~~~~l~llVIDEaHr~-----g~--~~~e~----l~~-l~~~~~vL~lSATp~p~tl~~ 448 (835)
.....+ ++|+-+++..-. -.+.++++|||||+-.. .. .+.+. +.. +.....+|++-||....+..+
T Consensus 118 ~~~~~~rLivqIdSL~R~~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdF 197 (824)
T PF02399_consen 118 DGRPYDRLIVQIDSLHRLDGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDF 197 (824)
T ss_pred cccccCeEEEEehhhhhcccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHH
Confidence 101123 444444433222 23567999999999752 11 12111 222 245678999999998877765
Q ss_pred HHhcC--CCcceecC----------------------------CCCCcc-----------ceeEEecccCHHHHHHHHHH
Q 003260 449 ALTGF--RDASLIST----------------------------PPPERL-----------PIKTHLSAFSKEKVISAIKY 487 (835)
Q Consensus 449 ~~~g~--~d~s~I~~----------------------------~p~~r~-----------~v~~~~~~~~~~~l~~~i~~ 487 (835)
....- .+..+|.. ++.+.. ...+.....+.......+..
T Consensus 198 l~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~ 277 (824)
T PF02399_consen 198 LASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLA 277 (824)
T ss_pred HHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHH
Confidence 54321 11111110 000000 00011111233457778888
Q ss_pred HHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCcc--E
Q 003260 488 ELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN--T 565 (835)
Q Consensus 488 ~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~--~ 565 (835)
.+..|.++-||+++..-.+.+++..+.. ..+|..++|.-+..+ +. . =++++|++=|+++..|+++.... -
T Consensus 278 ~L~~gknIcvfsSt~~~~~~v~~~~~~~--~~~Vl~l~s~~~~~d---v~-~--W~~~~VviYT~~itvG~Sf~~~HF~~ 349 (824)
T PF02399_consen 278 RLNAGKNICVFSSTVSFAEIVARFCARF--TKKVLVLNSTDKLED---VE-S--WKKYDVVIYTPVITVGLSFEEKHFDS 349 (824)
T ss_pred HHhCCCcEEEEeChHHHHHHHHHHHHhc--CCeEEEEcCCCCccc---cc-c--ccceeEEEEeceEEEEeccchhhceE
Confidence 8999999999999988888888887776 678888888765552 21 1 24799999999999999997542 3
Q ss_pred EEEe--cCCC-CChhHHHHHhcccCCCCCceEEEEEec
Q 003260 566 IIVQ--DVQQ-FGLAQLYQLRGRVGRADKEAHAYLFYP 600 (835)
Q Consensus 566 VIi~--d~p~-~sl~~l~Qr~GRaGR~g~~G~ay~l~~ 600 (835)
|..| .... -+..+.+|++||+-.-. ....|++++
T Consensus 350 ~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d 386 (824)
T PF02399_consen 350 MFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYID 386 (824)
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEe
Confidence 3333 1111 13456899999995543 445555544
No 160
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.10 E-value=3.8e-09 Score=126.13 Aligned_cols=304 Identities=20% Similarity=0.211 Sum_probs=189.7
Q ss_pred HhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhh
Q 003260 276 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 276 ~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f 355 (835)
...+..+...|.-.--.+. ..-+.-+-||-|||+++.+|+.-....|+.|.++...--||.--++.+...+
T Consensus 75 Rvlg~~~~dVQliG~i~lh---------~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 75 RVLGMRHFDVQLLGGIVLH---------LGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred HhcCCChhhHHHhhhhhhc---------CCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHH
Confidence 3455666777866532221 2358899999999999999988777789999999999999999888888766
Q ss_pred cCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhh-----cc-------cccCCccEEEEcCcccc------
Q 003260 356 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-----SR-------VVYNNLGLLVVDEEQRF------ 417 (835)
Q Consensus 356 ~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~-----~~-------l~~~~l~llVIDEaHr~------ 417 (835)
..+ |++|++...+.+..++...+. +||.++|...|- +. .....+.+.|+||++.+
T Consensus 146 ~~L-GlsvG~~~~~m~~~ek~~aY~------~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEAR 218 (822)
T COG0653 146 EFL-GLSVGVILAGMSPEEKRAAYA------CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEAR 218 (822)
T ss_pred HHc-CCceeeccCCCChHHHHHHHh------cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccc
Confidence 554 899999999999988887773 899999987552 11 22346788888888831
Q ss_pred ------c-----hhhHHHHhh----h------------------------------------------------------
Q 003260 418 ------G-----VKQKEKIAS----F------------------------------------------------------ 428 (835)
Q Consensus 418 ------g-----~~~~e~l~~----l------------------------------------------------------ 428 (835)
| ......+.. +
T Consensus 219 tPLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~ 298 (822)
T COG0653 219 TPLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHI 298 (822)
T ss_pred cceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHH
Confidence 1 000000000 0
Q ss_pred --cCC-------ceE------------------------------------------------------EEeecCCChhh
Q 003260 429 --KIS-------VDV------------------------------------------------------LTLSATPIPRT 445 (835)
Q Consensus 429 --~~~-------~~v------------------------------------------------------L~lSATp~p~t 445 (835)
..+ -.| .+||+|...+.
T Consensus 299 l~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~ 378 (822)
T COG0653 299 LFFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEE 378 (822)
T ss_pred HhhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhh
Confidence 000 111 11222221111
Q ss_pred HHHHHhcCCCcceecCC---CCCccceeEEecccC---HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCC
Q 003260 446 LYLALTGFRDASLISTP---PPERLPIKTHLSAFS---KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGV 519 (835)
Q Consensus 446 l~~~~~g~~d~s~I~~~---p~~r~~v~~~~~~~~---~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~ 519 (835)
..+.. +.+..++..| |..|.+-...+.... -..+++.|......|.+|||-..+++..+.+.+.|.+. ++
T Consensus 379 ~EF~~--iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~--~i 454 (822)
T COG0653 379 EEFDV--IYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKA--GI 454 (822)
T ss_pred hhhhh--ccCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhc--CC
Confidence 11111 1122222222 222333222222211 23456666677788999999999999999999999987 77
Q ss_pred eEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccE---------EEEecCCCC-ChhHHHHHhcccCCC
Q 003260 520 DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT---------IIVQDVQQF-GLAQLYQLRGRVGRA 589 (835)
Q Consensus 520 ~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~---------VIi~d~p~~-sl~~l~Qr~GRaGR~ 589 (835)
...++.+.-. .++.-+-.+....--|-|||+++++|-||.--.. +.+.+..+. |..--.|.+||+||.
T Consensus 455 ~h~VLNAk~h--~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQ 532 (822)
T COG0653 455 PHNVLNAKNH--AREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQ 532 (822)
T ss_pred CceeeccccH--HHHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccC
Confidence 7777777755 3333333333333468899999999999852111 112223221 222234999999999
Q ss_pred CCceEEEEEecC
Q 003260 590 DKEAHAYLFYPD 601 (835)
Q Consensus 590 g~~G~ay~l~~~ 601 (835)
|-+|..-+|.+-
T Consensus 533 GDpG~S~F~lSl 544 (822)
T COG0653 533 GDPGSSRFYLSL 544 (822)
T ss_pred CCcchhhhhhhh
Confidence 999988777653
No 161
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.09 E-value=3.3e-09 Score=121.51 Aligned_cols=113 Identities=17% Similarity=0.252 Sum_probs=97.1
Q ss_pred HhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCe-eEEEEcCcCCcCCCCCCccEEE
Q 003260 489 LDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAI-KILICTNIVESGLDIQNANTII 567 (835)
Q Consensus 489 l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~-~ILVaT~iie~GIDIp~v~~VI 567 (835)
-..|+.+++|+.-.+-++-+.++|... ++....+.|.....+|..++.+|...++ -.|++|...+-|||+..+++||
T Consensus 1041 kaegHRvL~yfQMTkM~dl~EdYl~yr--~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTVi 1118 (1185)
T KOG0388|consen 1041 KAEGHRVLMYFQMTKMIDLIEDYLVYR--GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVI 1118 (1185)
T ss_pred hcCCceEEehhHHHHHHHHHHHHHHhh--ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEE
Confidence 345678888887777777788888777 8899999999999999999999998654 4588999999999999999999
Q ss_pred EecCCCCChhHHHHHhcccCCCC--CceEEEEEecCCCc
Q 003260 568 VQDVQQFGLAQLYQLRGRVGRAD--KEAHAYLFYPDKSL 604 (835)
Q Consensus 568 i~d~p~~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~~~ 604 (835)
.||.+ |++.--.|...|+.|-| +.-.+|.+.+...+
T Consensus 1119 FYdSD-WNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTv 1156 (1185)
T KOG0388|consen 1119 FYDSD-WNPTADQQAMDRAHRLGQTRDVTVYRLITRGTV 1156 (1185)
T ss_pred EecCC-CCcchhhHHHHHHHhccCccceeeeeecccccH
Confidence 99998 79888889999999988 45778989887765
No 162
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.09 E-value=2.8e-09 Score=118.11 Aligned_cols=109 Identities=16% Similarity=0.176 Sum_probs=86.3
Q ss_pred CeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcC-Cee-EEEEcCcCCcCCCCCCccEEEEec
Q 003260 493 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIK-ILICTNIVESGLDIQNANTIIVQD 570 (835)
Q Consensus 493 gqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g-~~~-ILVaT~iie~GIDIp~v~~VIi~d 570 (835)
-+.+||..-..-.+-+.=.|.+. |+.++-+-|+|++..|...++.|.+. .+. .||+-...+..+|+-.+..|++.|
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~ka--GfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKA--GFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhcc--CceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 35666655444444444455555 88999999999999999999999875 344 467888889999999999999999
Q ss_pred CCCCChhHHHHHhcccCCCC--CceEEEEEecCCCc
Q 003260 571 VQQFGLAQLYQLRGRVGRAD--KEAHAYLFYPDKSL 604 (835)
Q Consensus 571 ~p~~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~~~ 604 (835)
+. |+++--.|...|+.|.| ++-.++.|+-++.+
T Consensus 717 PW-WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsi 751 (791)
T KOG1002|consen 717 PW-WNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSI 751 (791)
T ss_pred cc-ccHHHHhhhhhhHHhhcCccceeEEEeehhccH
Confidence 87 79999999999999998 45677778776644
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.05 E-value=9.4e-10 Score=106.18 Aligned_cols=127 Identities=20% Similarity=0.244 Sum_probs=77.0
Q ss_pred CCcEEEEccCCCcccHHHHH-HHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003260 303 PMDRLICGDVGFGKTEVALR-AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~-a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
+.-.+|-..+|+|||.-.+. .+.+++..+.++|||.|||.++..+++.++. . ++++.......
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~----~-~~~~~t~~~~~----------- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKG----L-PVRFHTNARMR----------- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTT----S-SEEEESTTSS------------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhc----C-CcccCceeeec-----------
Confidence 45578899999999996554 4456788899999999999999988776643 3 24443222211
Q ss_pred hhcCCcceeeccHHHhh----cccccCCccEEEEcCccccchhh---HHHHhhh--cCCceEEEeecCCChhh
Q 003260 382 IKHGHLNIIVGTHSLLG----SRVVYNNLGLLVVDEEQRFGVKQ---KEKIASF--KISVDVLTLSATPIPRT 445 (835)
Q Consensus 382 l~~G~~dIIVgT~~~L~----~~l~~~~l~llVIDEaHr~g~~~---~e~l~~l--~~~~~vL~lSATp~p~t 445 (835)
-..|..-|-+.||+.+. +.....++++||+||||-..... +..+..+ .....+|.|||||+.+.
T Consensus 68 ~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 01255667888887554 34456899999999999753322 1222222 23468999999996543
No 164
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.99 E-value=2.5e-08 Score=123.92 Aligned_cols=316 Identities=19% Similarity=0.275 Sum_probs=200.8
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC----CCEEEEEcccHHHHHHHHHHHHHh
Q 003260 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVVSER 354 (835)
Q Consensus 279 ~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~----g~qvlVLvPtr~LA~Q~~~~~~~~ 354 (835)
..++.|+|.+.++.+...+. ....+.+++.+.|.|||.+.+..+...... .+.+++++|+. +..+|.+++..
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~--~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s-~~~nw~~e~~k- 411 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLR--SNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPAS-LLSNWKREFEK- 411 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHH--hccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHH-HHHHHHHHHhh-
Confidence 34788999999977552221 235678999999999999976665442222 35789999975 56678888865
Q ss_pred hcCCCCcE-EEEecCCCC-HHHHHHHHHhhhcC----CcceeeccHHHhhc---cc---ccCCccEEEEcCccccchhh-
Q 003260 355 FSKYPDIK-VGLLSRFQS-KAEKEEHLDMIKHG----HLNIIVGTHSLLGS---RV---VYNNLGLLVVDEEQRFGVKQ- 421 (835)
Q Consensus 355 f~~~~gi~-V~~l~g~~s-~~e~~~~l~~l~~G----~~dIIVgT~~~L~~---~l---~~~~l~llVIDEaHr~g~~~- 421 (835)
|.. .++ +...+|... ...+...+..+... ..+++++|.+.+.. .. .-..++.+|+||+|+.....
T Consensus 412 ~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s 489 (866)
T COG0553 412 FAP--DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQS 489 (866)
T ss_pred hCc--cccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhh
Confidence 544 345 677777543 11112233333322 27899999998876 32 22467899999999963322
Q ss_pred --HHHHhhhcCCceEEEeecCCChhhHH--------HHHhcCCCcc----------------------------------
Q 003260 422 --KEKIASFKISVDVLTLSATPIPRTLY--------LALTGFRDAS---------------------------------- 457 (835)
Q Consensus 422 --~e~l~~l~~~~~vL~lSATp~p~tl~--------~~~~g~~d~s---------------------------------- 457 (835)
...+..+. ....+.+|+||....+. +..-+..+.+
T Consensus 490 ~~~~~l~~~~-~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 568 (866)
T COG0553 490 SEGKALQFLK-ALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKL 568 (866)
T ss_pred HHHHHHHHHh-hcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHH
Confidence 23333332 33347889998532211 0000000000
Q ss_pred --------------ee-cCCCCCccce----------------e--------------E----------E----------
Q 003260 458 --------------LI-STPPPERLPI----------------K--------------T----------H---------- 472 (835)
Q Consensus 458 --------------~I-~~~p~~r~~v----------------~--------------~----------~---------- 472 (835)
++ ..++.....+ . . .
T Consensus 569 i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 648 (866)
T COG0553 569 LSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRL 648 (866)
T ss_pred HHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 00 0000000000 0 0 0
Q ss_pred ---------ecc-----c-------------------------C-HHHHHHHH-HHHHhcCC--eEEEEecCccChHHHH
Q 003260 473 ---------LSA-----F-------------------------S-KEKVISAI-KYELDRGG--QVFYVLPRIKGLEEPM 509 (835)
Q Consensus 473 ---------~~~-----~-------------------------~-~~~l~~~i-~~~l~~gg--qvlVf~n~v~~~e~l~ 509 (835)
+.. . . ...+.+.+ ......+. ++++|.+.....+-+.
T Consensus 649 r~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~ 728 (866)
T COG0553 649 RQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLE 728 (866)
T ss_pred HHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHH
Confidence 000 0 0 01111222 23334455 7899998888888888
Q ss_pred HHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcC--CeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccC
Q 003260 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG--AIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 587 (835)
Q Consensus 510 ~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g--~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaG 587 (835)
..+... ++....++|+++...|...+..|.++ ..-++++|...+.|+|+-.+++||++|.. |+++...|...|+.
T Consensus 729 ~~l~~~--~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~-wnp~~~~Qa~dRa~ 805 (866)
T COG0553 729 DYLKAL--GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPW-WNPAVELQAIDRAH 805 (866)
T ss_pred HHHHhc--CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccc-cChHHHHHHHHHHH
Confidence 888887 46789999999999999999999986 45567788899999999999999999998 69999999999999
Q ss_pred CCCCc--eEEEEEecCCCc
Q 003260 588 RADKE--AHAYLFYPDKSL 604 (835)
Q Consensus 588 R~g~~--G~ay~l~~~~~~ 604 (835)
|.|+. -.+|.+...+.+
T Consensus 806 RigQ~~~v~v~r~i~~~ti 824 (866)
T COG0553 806 RIGQKRPVKVYRLITRGTI 824 (866)
T ss_pred HhcCcceeEEEEeecCCcH
Confidence 98854 555667777654
No 165
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.92 E-value=1.1e-08 Score=111.63 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=62.9
Q ss_pred hCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-CC-----EEEEEcccHHHHHHHHHH
Q 003260 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GK-----QAMVLAPTIVLAKQHFDV 350 (835)
Q Consensus 277 ~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-g~-----qvlVLvPtr~LA~Q~~~~ 350 (835)
.|||+|+|.|.+.+..+.+.+.+ +.+.++.+|||+|||++++.+++..+.. +. +++|.++|..+..|....
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~---~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 4 YFPYEPYPIQYEFMEELKRVLDR---GKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHc---CCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHH
Confidence 48999999999999999987743 5689999999999999999998755432 33 799999999999998877
Q ss_pred HHHh
Q 003260 351 VSER 354 (835)
Q Consensus 351 ~~~~ 354 (835)
++..
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7653
No 166
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.92 E-value=1.1e-08 Score=111.63 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=62.9
Q ss_pred hCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-CC-----EEEEEcccHHHHHHHHHH
Q 003260 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GK-----QAMVLAPTIVLAKQHFDV 350 (835)
Q Consensus 277 ~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-g~-----qvlVLvPtr~LA~Q~~~~ 350 (835)
.|||+|+|.|.+.+..+.+.+.+ +.+.++.+|||+|||++++.+++..+.. +. +++|.++|..+..|....
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~---~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 4 YFPYEPYPIQYEFMEELKRVLDR---GKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHc---CCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHH
Confidence 48999999999999999987743 5689999999999999999998755432 33 799999999999998877
Q ss_pred HHHh
Q 003260 351 VSER 354 (835)
Q Consensus 351 ~~~~ 354 (835)
++..
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7653
No 167
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.88 E-value=4e-08 Score=122.50 Aligned_cols=133 Identities=20% Similarity=0.203 Sum_probs=88.7
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHH--cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l--~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l 379 (835)
.+..-+|.--+|||||+..+..+-..+ ...+.|+|+|-++.|-.|+.++|.. ++... .... ...+..+-.+.
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~-~~~~~-~~~~---~~~s~~~Lk~~- 345 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQS-FGKVA-FNDP---KAESTSELKEL- 345 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHH-HHHhh-hhcc---cccCHHHHHHH-
Confidence 345679999999999999665554443 3468999999999999999999987 54321 1111 33344443333
Q ss_pred HhhhcCCcceeeccHHHhhcccc-------cCCccEEEEcCcccc--chhhHHHHhhhcCCceEEEeecCCCh
Q 003260 380 DMIKHGHLNIIVGTHSLLGSRVV-------YNNLGLLVVDEEQRF--GVKQKEKIASFKISVDVLTLSATPIP 443 (835)
Q Consensus 380 ~~l~~G~~dIIVgT~~~L~~~l~-------~~~l~llVIDEaHr~--g~~~~e~l~~l~~~~~vL~lSATp~p 443 (835)
+..+.-.|||+|-+.+...+. -.+-=+||+|||||. |..+.. +....++...+++|+||+-
T Consensus 346 --l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~~~~-~~~~~~~a~~~gFTGTPi~ 415 (962)
T COG0610 346 --LEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGELAKL-LKKALKKAIFIGFTGTPIF 415 (962)
T ss_pred --HhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccHHHHH-HHHHhccceEEEeeCCccc
Confidence 343445799999877754321 122236899999995 443332 3444456889999999964
No 168
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.66 E-value=3e-06 Score=100.42 Aligned_cols=121 Identities=21% Similarity=0.232 Sum_probs=94.9
Q ss_pred HHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC--------------------CCCeEEEEeCCCCHHHHHHHHHHhhc
Q 003260 483 SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF--------------------PGVDIAIAHGQQYSRQLEETMEKFAQ 542 (835)
Q Consensus 483 ~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~--------------------p~~~v~~lhg~m~~~ere~vl~~F~~ 542 (835)
+.+...-.-|.++|||..+....+-+..+|...- .|.....+.|.....+|+.....|.+
T Consensus 1133 eIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNd 1212 (1567)
T KOG1015|consen 1133 EILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFND 1212 (1567)
T ss_pred HHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcC
Confidence 3333333457789999999888777777665321 12356778899999999999999986
Q ss_pred C----CeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCC--ceEEEEEecCCCc
Q 003260 543 G----AIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK--EAHAYLFYPDKSL 604 (835)
Q Consensus 543 g----~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~--~G~ay~l~~~~~~ 604 (835)
- ..-.||+|...+-|||+-.+|.||++|+. |+++--.|-+=||-|.|+ +-|+|.|.....+
T Consensus 1213 p~NlRaRl~LISTRAGsLGiNLvAANRVIIfDas-WNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTm 1279 (1567)
T KOG1015|consen 1213 PTNLRARLFLISTRAGSLGINLVAANRVIIFDAS-WNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTM 1279 (1567)
T ss_pred cccceeEEEEEeeccCccccceeecceEEEEecc-cCCccchHHHHHHHhhcCcCceeehhhhhcccH
Confidence 4 24479999999999999999999999997 799888999999999994 5667777766544
No 169
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.59 E-value=6.1e-07 Score=96.25 Aligned_cols=130 Identities=23% Similarity=0.271 Sum_probs=97.7
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHH
Q 003260 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 272 ~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~ 351 (835)
+.......+.|++.|.-++-.+.+ ..|+...||-|||+++.+++......|+.|-|++....||..-++.+
T Consensus 68 ea~~r~~g~~p~~vQll~~l~L~~---------G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~ 138 (266)
T PF07517_consen 68 EAARRTLGLRPYDVQLLGALALHK---------GRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEM 138 (266)
T ss_dssp HHHHHHTS----HHHHHHHHHHHT---------TSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHH
T ss_pred HHHHHHcCCcccHHHHhhhhhccc---------ceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHH
Confidence 445567788999999999765532 24999999999999987777777778999999999999999999999
Q ss_pred HHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhh-----ccc-------ccCCccEEEEcCcccc
Q 003260 352 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-----SRV-------VYNNLGLLVVDEEQRF 417 (835)
Q Consensus 352 ~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~-----~~l-------~~~~l~llVIDEaHr~ 417 (835)
...|..+ |++|+......+..++...+. +||++||.+.+. +.+ ..+.+.++||||+|.+
T Consensus 139 ~~~y~~L-Glsv~~~~~~~~~~~r~~~Y~------~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 139 RPFYEFL-GLSVGIITSDMSSEERREAYA------ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp HHHHHHT-T--EEEEETTTEHHHHHHHHH------SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred HHHHHHh-hhccccCccccCHHHHHHHHh------CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 9877766 899999999888777666552 789999987553 211 2467899999999964
No 170
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.36 E-value=5.1e-06 Score=101.85 Aligned_cols=164 Identities=20% Similarity=0.311 Sum_probs=102.8
Q ss_pred CCCCCHhHHHHHHHHHHhhhcC-------------------------------CCCCcEEEEccCCCcccHHHHHHHHHH
Q 003260 279 PYEPTPDQKKAFLDVERDLTER-------------------------------ETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 279 ~~~ptp~Q~~AI~~il~dl~~~-------------------------------~~~~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
.|+--|+|.+|+.+|+.-+..- +...++.+.++||+|||.+|+..++..
T Consensus 4 ~~e~l~hQ~~av~ai~~~F~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~M~TGtGKT~~~~~~i~~l 83 (986)
T PRK15483 4 LLEELPHQEQALAAILAAFTGIDIASADPNHYANPLIKLRYENGIPGRSRTRIDDKANIDIKMETGTGKTYVYTRLMYEL 83 (986)
T ss_pred ccccChhHHHHHHHHHHHhcCCCccCCccccccCcccccchhhccccccccccCccceEEEEeCCCCCHHHHHHHHHHHH
Confidence 3444789999999888643210 112588999999999999999988876
Q ss_pred HcC-C-CEEEEEcccHHHHHHHHHHHH-----HhhcC-CCC--cEEEEecCCCCH-HHH---HHHHHhhhcC------Cc
Q 003260 328 VSA-G-KQAMVLAPTIVLAKQHFDVVS-----ERFSK-YPD--IKVGLLSRFQSK-AEK---EEHLDMIKHG------HL 387 (835)
Q Consensus 328 l~~-g-~qvlVLvPtr~LA~Q~~~~~~-----~~f~~-~~g--i~V~~l~g~~s~-~e~---~~~l~~l~~G------~~ 387 (835)
... | .+++|+||+.++-..+...+. ..|.. +.+ +...++.+.... ..+ -..+.....+ .+
T Consensus 84 ~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I 163 (986)
T PRK15483 84 HQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTI 163 (986)
T ss_pred HHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCce
Confidence 544 3 579999999888777665543 33332 222 444455443200 000 1122222222 48
Q ss_pred ceeeccHHHhhcccc----------------cCCc----cEEEEcCcccc--chhhHHHHhhhcCCceEEEeecCCCh
Q 003260 388 NIIVGTHSLLGSRVV----------------YNNL----GLLVVDEEQRF--GVKQKEKIASFKISVDVLTLSATPIP 443 (835)
Q Consensus 388 dIIVgT~~~L~~~l~----------------~~~l----~llVIDEaHr~--g~~~~e~l~~l~~~~~vL~lSATp~p 443 (835)
.|+|.|-+.|.+... +..+ -+||+||.|+| +...++.+..+.+. -+|.+|||...
T Consensus 164 ~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~~k~~~~i~~lnpl-~~lrysAT~~~ 240 (986)
T PRK15483 164 HVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRDNKFYQAIEALKPQ-MIIRFGATFPD 240 (986)
T ss_pred EEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcchHHHHHHHhcCcc-cEEEEeeecCC
Confidence 899999988865321 1111 25999999999 34556777666543 36679999754
No 171
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.35 E-value=6.1e-05 Score=85.99 Aligned_cols=266 Identities=13% Similarity=0.179 Sum_probs=166.5
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecC----------CCCH-------HHHHHHHHhhhcC--------
Q 003260 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR----------FQSK-------AEKEEHLDMIKHG-------- 385 (835)
Q Consensus 331 g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g----------~~s~-------~e~~~~l~~l~~G-------- 385 (835)
.++||||+|+|..|.++.+.+.+.+..- ..+.-..+ ..+. ..+-..+..+-.|
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~--~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPG--KQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRL 114 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCcc--chHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEE
Confidence 3689999999999999988887644320 11100000 0000 0111123333333
Q ss_pred ----------------CcceeeccHHHhhc----------cc-ccCCccEEEEcCccccchhhHHHHhhh----------
Q 003260 386 ----------------HLNIIVGTHSLLGS----------RV-VYNNLGLLVVDEEQRFGVKQKEKIASF---------- 428 (835)
Q Consensus 386 ----------------~~dIIVgT~~~L~~----------~l-~~~~l~llVIDEaHr~g~~~~e~l~~l---------- 428 (835)
+.||||++|--|.. +. .++.+.++|||.+|-+..+.++.+...
T Consensus 115 Gik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 115 GIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred eEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCC
Confidence 36999999965541 12 357888999999997755544443211
Q ss_pred ------------------cCCceEEEeecCCChhhHHHHHhcCCCcce---ecCCCC-------CccceeEEeccc---C
Q 003260 429 ------------------KISVDVLTLSATPIPRTLYLALTGFRDASL---ISTPPP-------ERLPIKTHLSAF---S 477 (835)
Q Consensus 429 ------------------~~~~~vL~lSATp~p~tl~~~~~g~~d~s~---I~~~p~-------~r~~v~~~~~~~---~ 477 (835)
+.-.|+|++|+...|+...+......+..- +..+.. -..++.+....+ +
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 124789999999999887766654333211 111111 011222221111 1
Q ss_pred ----HH--------HHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCe
Q 003260 478 ----KE--------KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAI 545 (835)
Q Consensus 478 ----~~--------~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~ 545 (835)
.+ .++..+.+ -...+.++||+|+--+--.+-+.|++. ++..+.+|--.+..+..++-..|.+|+.
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk~~--~~sF~~i~EYts~~~isRAR~~F~~G~~ 351 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLKKE--NISFVQISEYTSNSDISRARSQFFHGRK 351 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHHhc--CCeEEEecccCCHHHHHHHHHHHHcCCc
Confidence 11 12222222 123478999999988888888889876 8888889988889999999999999999
Q ss_pred eEEEEcCcC--CcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCC------CceEEEEEecCC
Q 003260 546 KILICTNIV--ESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD------KEAHAYLFYPDK 602 (835)
Q Consensus 546 ~ILVaT~ii--e~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g------~~G~ay~l~~~~ 602 (835)
.||+.|-=+ =+=..|.++.+||.|++|. .+.-|...+.-.+... ..+.|.++|+.-
T Consensus 352 ~iLL~TER~HFfrRy~irGi~~viFY~~P~-~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~ 415 (442)
T PF06862_consen 352 PILLYTERFHFFRRYRIRGIRHVIFYGPPE-NPQFYSELLNMLDESSGGEVDAADATVTVLYSKY 415 (442)
T ss_pred eEEEEEhHHhhhhhceecCCcEEEEECCCC-ChhHHHHHHhhhcccccccccccCceEEEEecHh
Confidence 999999743 3556788999999999997 4554555554444333 257889998764
No 172
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.19 E-value=3.5e-06 Score=87.33 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=49.1
Q ss_pred CCHhHHHHHHHHHHhhhcCCCCCc-EEEEccCCCcccHHHHHHHHHH--------HcCCCEEEEEcccHHHHHHHHHHHH
Q 003260 282 PTPDQKKAFLDVERDLTERETPMD-RLICGDVGFGKTEVALRAIFCV--------VSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 282 ptp~Q~~AI~~il~dl~~~~~~~d-~Ll~a~TGsGKT~val~a~l~~--------l~~g~qvlVLvPtr~LA~Q~~~~~~ 352 (835)
+++.|.+|+..++. ... .+|.||+|+|||.+....+... ...+.++++++|+...+.+..+.+.
T Consensus 2 ln~~Q~~Ai~~~~~-------~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~ 74 (236)
T PF13086_consen 2 LNESQREAIQSALS-------SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLK 74 (236)
T ss_dssp --HHHHHHHHHHCT-------SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc-------CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHH
Confidence 67899999887753 234 8999999999997755544444 4567899999999999999999987
Q ss_pred H
Q 003260 353 E 353 (835)
Q Consensus 353 ~ 353 (835)
+
T Consensus 75 ~ 75 (236)
T PF13086_consen 75 K 75 (236)
T ss_dssp C
T ss_pred h
Confidence 6
No 173
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.15 E-value=1.4e-05 Score=82.32 Aligned_cols=125 Identities=20% Similarity=0.232 Sum_probs=71.9
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCC
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 360 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~g 360 (835)
++++.|.+|+..++.. ..+-.+|+|+.|+|||.+.-.........+.++++++||...+....+.. +
T Consensus 1 ~L~~~Q~~a~~~~l~~-----~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~--------~ 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTS-----GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKT--------G 67 (196)
T ss_dssp -S-HHHHHHHHHHHHC-----TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHH--------T
T ss_pred CCCHHHHHHHHHHHhc-----CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhh--------C
Confidence 4789999999998752 23457889999999998743332223345789999999998887754442 2
Q ss_pred cEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhhhc-C-CceEEEe
Q 003260 361 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFK-I-SVDVLTL 437 (835)
Q Consensus 361 i~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l~-~-~~~vL~l 437 (835)
+.+..++++.... ..+ - ......+.+.++|||||+-.++......+.... . +.++|++
T Consensus 68 ~~a~Ti~~~l~~~---------~~~----~------~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilv 127 (196)
T PF13604_consen 68 IEAQTIHSFLYRI---------PNG----D------DEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILV 127 (196)
T ss_dssp S-EEEHHHHTTEE---------CCE----E------CCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEE
T ss_pred cchhhHHHHHhcC---------Ccc----c------ccccccCCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEE
Confidence 3444333321100 000 0 000011456679999999999887776665543 2 4555543
No 174
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.15 E-value=5e-06 Score=100.20 Aligned_cols=157 Identities=19% Similarity=0.277 Sum_probs=107.7
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc-CC--CEEEEEcccHHHHHHHHHHHHHhhcC
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AG--KQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~-~g--~qvlVLvPtr~LA~Q~~~~~~~~f~~ 357 (835)
.++.+|...++++.. |. +++-|-|+....|.|||.+-+..+....+ .| +.-||+|||..+. .|.-+|+. |+
T Consensus 615 qLReYQkiGLdWLat-LY--eknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviL-nWEMElKR-wc- 688 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLAT-LY--EKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVIL-NWEMELKR-WC- 688 (1958)
T ss_pred HHHHHHHhhHHHHHH-HH--HhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhh-hhhHHHhh-hC-
Confidence 578899999987765 32 34567799999999999985443332222 22 4578999998766 46667775 54
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhh-hcCCcceeeccHHHhhccc---ccCCccEEEEcCcccc---chhhHHHHhhhcC
Q 003260 358 YPDIKVGLLSRFQSKAEKEEHLDMI-KHGHLNIIVGTHSLLGSRV---VYNNLGLLVVDEEQRF---GVKQKEKIASFKI 430 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l-~~G~~dIIVgT~~~L~~~l---~~~~l~llVIDEaHr~---g~~~~e~l~~l~~ 430 (835)
||++|..++|. ..+++.-...- +-...+|.|+++..+..++ .-++|.++|+||+|+. -...++.+..+.
T Consensus 689 -PglKILTYyGs--~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfn- 764 (1958)
T KOG0391|consen 689 -PGLKILTYYGS--HKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFN- 764 (1958)
T ss_pred -CcceEeeecCC--HHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHHhccc-
Confidence 58999988884 44433322211 2234689999998886543 3478999999999985 445566676664
Q ss_pred CceEEEeecCCChhhHH
Q 003260 431 SVDVLTLSATPIPRTLY 447 (835)
Q Consensus 431 ~~~vL~lSATp~p~tl~ 447 (835)
..+.|+||+||..+++.
T Consensus 765 sqrRLLLtgTPLqNslm 781 (1958)
T KOG0391|consen 765 SQRRLLLTGTPLQNSLM 781 (1958)
T ss_pred hhheeeecCCchhhHHH
Confidence 34567899999766543
No 175
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.86 E-value=3.4e-05 Score=79.85 Aligned_cols=135 Identities=19% Similarity=0.290 Sum_probs=69.8
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCC--CEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g--~qvlVLvPtr~LA~Q~~~~~~~~f~~~ 358 (835)
..|+.|..+++.+++ ..-+++.||.|+|||+.++.+++..+.++ .+++|+-|..+... .++-+
T Consensus 4 p~~~~Q~~~~~al~~-------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~--------~lGfl 68 (205)
T PF02562_consen 4 PKNEEQKFALDALLN-------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGE--------DLGFL 68 (205)
T ss_dssp --SHHHHHHHHHHHH--------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT------------SS
T ss_pred CCCHHHHHHHHHHHh-------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcc--------ccccC
Confidence 357899999999884 24688899999999999999999888776 47888888764311 13333
Q ss_pred CCcEEEEecCC-----------CCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhH-HHHh
Q 003260 359 PDIKVGLLSRF-----------QSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK-EKIA 426 (835)
Q Consensus 359 ~gi~V~~l~g~-----------~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~-e~l~ 426 (835)
||-.-.-+... ......+ ..+.+| .|-+.++..+.. -.|++ .+|||||||.+...+. ..+.
T Consensus 69 pG~~~eK~~p~~~p~~d~l~~~~~~~~~~---~~~~~~--~Ie~~~~~~iRG-rt~~~-~~iIvDEaQN~t~~~~k~ilT 141 (205)
T PF02562_consen 69 PGDLEEKMEPYLRPIYDALEELFGKEKLE---ELIQNG--KIEIEPLAFIRG-RTFDN-AFIIVDEAQNLTPEELKMILT 141 (205)
T ss_dssp ---------TTTHHHHHHHTTTS-TTCHH---HHHHTT--SEEEEEGGGGTT---B-S-EEEEE-SGGG--HHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhChHhHH---HHhhcC--eEEEEehhhhcC-ccccc-eEEEEecccCCCHHHHHHHHc
Confidence 32111111000 0000101 111223 455555555543 23433 8999999999987654 4466
Q ss_pred hhcCCceEEEe
Q 003260 427 SFKISVDVLTL 437 (835)
Q Consensus 427 ~l~~~~~vL~l 437 (835)
+...+.+++++
T Consensus 142 R~g~~skii~~ 152 (205)
T PF02562_consen 142 RIGEGSKIIIT 152 (205)
T ss_dssp TB-TT-EEEEE
T ss_pred ccCCCcEEEEe
Confidence 66777777754
No 176
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.80 E-value=0.00011 Score=84.81 Aligned_cols=73 Identities=23% Similarity=0.191 Sum_probs=60.1
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHH
Q 003260 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 274 ~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~ 352 (835)
....++..+.+-|.+|+..... . ..-.+++||+|+|||.+....+.+.+..+++|+|.+||.+-+..+.+++.
T Consensus 178 ~~~~~~~~ln~SQk~Av~~~~~-----~-k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 178 KITFFNKNLNSSQKAAVSFAIN-----N-KDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccCCccccHHHHHHHHHHhc-----c-CCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 3345666889999999877653 1 14578899999999999888888999999999999999999988888654
No 177
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.75 E-value=0.00015 Score=88.06 Aligned_cols=119 Identities=18% Similarity=0.279 Sum_probs=95.1
Q ss_pred HHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCC--eeEEEEcCcCCcCCCCCC
Q 003260 485 IKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGA--IKILICTNIVESGLDIQN 562 (835)
Q Consensus 485 i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~--~~ILVaT~iie~GIDIp~ 562 (835)
+++....|+.+|||..-..-.+-+...|.-+ |+....+.|....++|+..|++|.... ...+++|...+.|||+-+
T Consensus 1269 LqQLk~eghRvLIfTQMtkmLDVLeqFLnyH--gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtg 1346 (1958)
T KOG0391|consen 1269 LQQLKSEGHRVLIFTQMTKMLDVLEQFLNYH--GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTG 1346 (1958)
T ss_pred HHHHHhcCceEEehhHHHHHHHHHHHHHhhc--ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcccccccc
Confidence 3444467889999998887777777888777 888999999999999999999998764 456889999999999999
Q ss_pred ccEEEEecCCCCChhHHHHHhcccCCCC--CceEEEEEecCCCcCC
Q 003260 563 ANTIIVQDVQQFGLAQLYQLRGRVGRAD--KEAHAYLFYPDKSLLS 606 (835)
Q Consensus 563 v~~VIi~d~p~~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~~~~~ 606 (835)
+++||.||.+ |++.--.|.--|+.|.| +.-..|.|+++..+.+
T Consensus 1347 ADTVvFYDsD-wNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEe 1391 (1958)
T KOG0391|consen 1347 ADTVVFYDSD-WNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEE 1391 (1958)
T ss_pred CceEEEecCC-CCchhhhHHHHHHHhhcCccceEEEEeeccchHHH
Confidence 9999999998 68754444444444444 5678899999876643
No 178
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.74 E-value=9.2e-05 Score=89.65 Aligned_cols=132 Identities=27% Similarity=0.277 Sum_probs=99.2
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC--CCEEEEEcccHHHHHHHHHHH
Q 003260 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 274 ~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~--g~qvlVLvPtr~LA~Q~~~~~ 351 (835)
++...+ ...|.|.+.+.... ....+.++.+|||+|||.+|..+++..... +.+|++++|-.+|+..-.+.+
T Consensus 921 ~e~~~~-~fn~~q~~if~~~y------~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw 993 (1230)
T KOG0952|consen 921 FEALYK-YFNPIQTQIFHCLY------HTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDW 993 (1230)
T ss_pred HHHhhc-ccCCccceEEEEEe------ecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccch
Confidence 344334 44566666554332 234678999999999999999999988764 579999999999999999999
Q ss_pred HHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-------cccCCccEEEEcCccccchh
Q 003260 352 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-------VVYNNLGLLVVDEEQRFGVK 420 (835)
Q Consensus 352 ~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-------l~~~~l~llVIDEaHr~g~~ 420 (835)
..++... |+++.-++|...++- ..+ .+.+++|+||...... -.+.+++++|+||.|..|..
T Consensus 994 ~~r~~~~-g~k~ie~tgd~~pd~-----~~v--~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 994 SKRDELP-GIKVIELTGDVTPDV-----KAV--READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred hhhcccC-CceeEeccCccCCCh-----hhe--ecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 8876544 899999999766541 112 2478999999877532 34678999999999987654
No 179
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.74 E-value=7.5e-05 Score=83.90 Aligned_cols=50 Identities=26% Similarity=0.309 Sum_probs=42.9
Q ss_pred cEEEEccCCCcccHHHHHHHHHH--HcCCCEEEEEcccHHHHHHHHHHHHHh
Q 003260 305 DRLICGDVGFGKTEVALRAIFCV--VSAGKQAMVLAPTIVLAKQHFDVVSER 354 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~a~l~~--l~~g~qvlVLvPtr~LA~Q~~~~~~~~ 354 (835)
-++|.|..|||||++++..+... ...+..++++++...|...+...+...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~ 54 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKK 54 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhh
Confidence 47899999999999998777766 567889999999999999888888764
No 180
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.73 E-value=0.00027 Score=85.34 Aligned_cols=68 Identities=24% Similarity=0.205 Sum_probs=57.4
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHH
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
..+++.|..|+..++. .....+|.||+|+|||.+....+...+..|.+|++++||...+.++.+.+.+
T Consensus 156 ~~ln~~Q~~Av~~~l~------~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALS------SKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhc------CCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4789999999988753 1246899999999999887777777777889999999999999999988876
No 181
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.66 E-value=0.00076 Score=82.61 Aligned_cols=134 Identities=24% Similarity=0.239 Sum_probs=80.5
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc-CC--CEEEEEcccHHHHHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AG--KQAMVLAPTIVLAKQ 346 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~-~g--~qvlVLvPtr~LA~Q 346 (835)
....++....+.+++.|++|+..+.. ..-.+|.|+.|+|||.+. ..++..+. .+ ..+++++||-..|..
T Consensus 312 ~i~~~~~~~~~~l~~~Q~~Ai~~~~~-------~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~ 383 (720)
T TIGR01448 312 HIWEVEKKLRKGLSEEQKQALDTAIQ-------HKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKR 383 (720)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHh-------CCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHH
Confidence 44566777888999999999988753 246899999999999874 23333332 34 678999999887765
Q ss_pred HHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHH-
Q 003260 347 HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKI- 425 (835)
Q Consensus 347 ~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l- 425 (835)
+. +.. |.....+++. +.. + .+-. ..... -.....++|||||++.++......+
T Consensus 384 L~----e~~----g~~a~Tih~l---------L~~---~-~~~~--~~~~~---~~~~~~~llIvDEaSMvd~~~~~~Ll 437 (720)
T TIGR01448 384 LG----EVT----GLTASTIHRL---------LGY---G-PDTF--RHNHL---EDPIDCDLLIVDESSMMDTWLALSLL 437 (720)
T ss_pred HH----Hhc----CCccccHHHH---------hhc---c-CCcc--chhhh---hccccCCEEEEeccccCCHHHHHHHH
Confidence 33 211 2222222221 100 0 0000 00000 1124578999999999987655444
Q ss_pred hhhcCCceEEEe
Q 003260 426 ASFKISVDVLTL 437 (835)
Q Consensus 426 ~~l~~~~~vL~l 437 (835)
...+.+.++|++
T Consensus 438 ~~~~~~~rlilv 449 (720)
T TIGR01448 438 AALPDHARLLLV 449 (720)
T ss_pred HhCCCCCEEEEE
Confidence 445556676654
No 182
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=97.64 E-value=0.0019 Score=75.95 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=66.3
Q ss_pred EEEEeCCCCHHHHHHHHHHhhcC---CeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEE--
Q 003260 521 IAIAHGQQYSRQLEETMEKFAQG---AIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHA-- 595 (835)
Q Consensus 521 v~~lhg~m~~~ere~vl~~F~~g---~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~a-- 595 (835)
...+.|..+..+|++.+++|.+. ..-+|++|.....|||+-.++.+|++++. |+...-.|.+-|+-|.|++-.|
T Consensus 764 y~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~-wnpchdaqavcRvyrYGQ~Kpcfv 842 (1387)
T KOG1016|consen 764 YLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDAC-WNPCHDAQAVCRVYRYGQQKPCFV 842 (1387)
T ss_pred eecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEee-cCccccchhhhhhhhhcCcCceeE
Confidence 34567888889999999999864 23578999999999999999999999997 6888888999999999966555
Q ss_pred EEEecCCC
Q 003260 596 YLFYPDKS 603 (835)
Q Consensus 596 y~l~~~~~ 603 (835)
|.++-+..
T Consensus 843 YRlVmD~~ 850 (1387)
T KOG1016|consen 843 YRLVMDNS 850 (1387)
T ss_pred Eeehhhhh
Confidence 45555443
No 183
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.55 E-value=0.00043 Score=75.08 Aligned_cols=154 Identities=18% Similarity=0.103 Sum_probs=100.4
Q ss_pred CCCHhHHHHHHHHHHhhh---cCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCC-EEEEEcccHHHHHHHHHHHHHhhc
Q 003260 281 EPTPDQKKAFLDVERDLT---ERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK-QAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~---~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~-qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
.++..|.+++--..+.-. ......-.++-..||.||.-+..-.++..+.+|. +++++..+..|-....+.++. ++
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~D-IG 115 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRD-IG 115 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHH-hC
Confidence 468999998755443111 1223566888889999998886666666666664 699999999999999999987 55
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc--------------cc--CC-ccEEEEcCccccch
Q 003260 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV--------------VY--NN-LGLLVVDEEQRFGV 419 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l--------------~~--~~-l~llVIDEaHr~g~ 419 (835)
.. .+.+..+........ ..+. -.|+++|++.|...- .| .+ =++||+||||....
T Consensus 116 ~~-~i~v~~l~~~~~~~~-----~~~~---~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn 186 (303)
T PF13872_consen 116 AD-NIPVHPLNKFKYGDI-----IRLK---EGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKN 186 (303)
T ss_pred CC-cccceechhhccCcC-----CCCC---CCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCC
Confidence 44 355655554321110 1223 349999998875321 11 12 26899999998622
Q ss_pred ---------hhHHH---HhhhcCCceEEEeecCCChh
Q 003260 420 ---------KQKEK---IASFKISVDVLTLSATPIPR 444 (835)
Q Consensus 420 ---------~~~e~---l~~l~~~~~vL~lSATp~p~ 444 (835)
++-.. |...-++.++|.+|||...+
T Consensus 187 ~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase 223 (303)
T PF13872_consen 187 LSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE 223 (303)
T ss_pred CCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC
Confidence 11111 33335788999999997443
No 184
>PRK10536 hypothetical protein; Provisional
Probab=97.55 E-value=0.0025 Score=68.10 Aligned_cols=136 Identities=13% Similarity=0.156 Sum_probs=74.7
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCC--CEEEEEcccHHHHHHHHHHHHHhhcC
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g--~qvlVLvPtr~LA~Q~~~~~~~~f~~ 357 (835)
...+..|..++..+.+ ...+++.|++|+|||..++..+...+.++ .++++.=|+..... .++-
T Consensus 58 ~p~n~~Q~~~l~al~~-------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge--------~LGf 122 (262)
T PRK10536 58 LARNEAQAHYLKAIES-------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADE--------DLGF 122 (262)
T ss_pred cCCCHHHHHHHHHHhc-------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchh--------hhCc
Confidence 3567888888887643 24788899999999999988877665333 34455555543211 1222
Q ss_pred CCCcE---EEEe--------cCCCCHHHHHHHHHhhh-cCCcceeeccHHHhhcccccCCccEEEEcCccccchhhH-HH
Q 003260 358 YPDIK---VGLL--------SRFQSKAEKEEHLDMIK-HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK-EK 424 (835)
Q Consensus 358 ~~gi~---V~~l--------~g~~s~~e~~~~l~~l~-~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~-e~ 424 (835)
+||-. +..+ ....... .++.+. ...-.|-|.....+... .|. -++|||||||.+...+. ..
T Consensus 123 LPG~~~eK~~p~~~pi~D~L~~~~~~~----~~~~~~~~~~~~Iei~~l~ymRGr-tl~-~~~vIvDEaqn~~~~~~k~~ 196 (262)
T PRK10536 123 LPGDIAEKFAPYFRPVYDVLVRRLGAS----FMQYCLRPEIGKVEIAPFAYMRGR-TFE-NAVVILDEAQNVTAAQMKMF 196 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhChH----HHHHHHHhccCcEEEecHHHhcCC-ccc-CCEEEEechhcCCHHHHHHH
Confidence 22210 0000 0000000 111111 11123555555555432 343 38999999999977654 44
Q ss_pred HhhhcCCceEEE
Q 003260 425 IASFKISVDVLT 436 (835)
Q Consensus 425 l~~l~~~~~vL~ 436 (835)
+.++..+.++|+
T Consensus 197 ltR~g~~sk~v~ 208 (262)
T PRK10536 197 LTRLGENVTVIV 208 (262)
T ss_pred HhhcCCCCEEEE
Confidence 566677777664
No 185
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.46 E-value=0.0027 Score=75.95 Aligned_cols=129 Identities=24% Similarity=0.191 Sum_probs=75.9
Q ss_pred CHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHH--HHHHHHHHcC---CCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003260 283 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA--LRAIFCVVSA---GKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 283 tp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~va--l~a~l~~l~~---g~qvlVLvPtr~LA~Q~~~~~~~~f~~ 357 (835)
.+.|+.|+..++. ..-.+|.|+.|+|||.+. ++.++..... +.++++++||---|..+.+.+...+..
T Consensus 147 ~~~Qk~A~~~al~-------~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~ 219 (586)
T TIGR01447 147 QNWQKVAVALALK-------SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKN 219 (586)
T ss_pred cHHHHHHHHHHhh-------CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcc
Confidence 4789999887764 256899999999999874 3333332222 257999999998888877776553332
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeecc-HHHhh----------cccccCCccEEEEcCccccchhhHHH-H
Q 003260 358 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT-HSLLG----------SRVVYNNLGLLVVDEEQRFGVKQKEK-I 425 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT-~~~L~----------~~l~~~~l~llVIDEaHr~g~~~~e~-l 425 (835)
++ .. .. ... . ..+-..| |..|. +.-....+++|||||+-......... +
T Consensus 220 l~-~~---------~~----~~~----~-~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll 280 (586)
T TIGR01447 220 LA-AA---------EA----LIA----A-LPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLL 280 (586)
T ss_pred cc-cc---------hh----hhh----c-cccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHH
Confidence 21 10 00 000 0 0111122 11111 11122357899999999987765544 4
Q ss_pred hhhcCCceEEEe
Q 003260 426 ASFKISVDVLTL 437 (835)
Q Consensus 426 ~~l~~~~~vL~l 437 (835)
..++.+.++|++
T Consensus 281 ~al~~~~rlIlv 292 (586)
T TIGR01447 281 KALPPNTKLILL 292 (586)
T ss_pred HhcCCCCEEEEE
Confidence 455666776654
No 186
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.43 E-value=0.00092 Score=70.10 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=79.3
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEE-EEcccHHHHHHHHHHHH
Q 003260 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM-VLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 274 ~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvl-VLvPtr~LA~Q~~~~~~ 352 (835)
|+-....-.+|.|.+...++.+ .+.+.+.+.+.-+|.|||.|.+..+...+.+|.+.+ ++|| +.|..|.++.+.
T Consensus 16 ~E~e~~iliR~~Q~~ia~~mi~----~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~ 90 (229)
T PF12340_consen 16 FEIESNILIRPVQVEIAREMIS----PPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVP-KALLEQMRQMLR 90 (229)
T ss_pred HHHHcCceeeHHHHHHHHHHhC----CCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHH
Confidence 3334556789999998877764 345788999999999999997666666667776554 5555 679999999999
Q ss_pred HhhcCCCCcEEEE--ecCCCCHH--H---HHHHHHhhhcCCcceeeccHHHhh
Q 003260 353 ERFSKYPDIKVGL--LSRFQSKA--E---KEEHLDMIKHGHLNIIVGTHSLLG 398 (835)
Q Consensus 353 ~~f~~~~gi~V~~--l~g~~s~~--e---~~~~l~~l~~G~~dIIVgT~~~L~ 398 (835)
.+++...+-+|.. +++..... . ....++.... +-.|+++||+.+.
T Consensus 91 ~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~-~~gill~~PEhil 142 (229)
T PF12340_consen 91 SRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMR-SGGILLATPEHIL 142 (229)
T ss_pred HHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHH-cCCEEEeChHHHH
Confidence 9998765544443 33433221 1 1112222222 2359999998553
No 187
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.40 E-value=0.00021 Score=71.75 Aligned_cols=100 Identities=22% Similarity=0.332 Sum_probs=68.1
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcC--cCCcCCCCCC--ccEE
Q 003260 491 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN--IVESGLDIQN--ANTI 566 (835)
Q Consensus 491 ~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~--iie~GIDIp~--v~~V 566 (835)
.++.++||+++.+..+.+.+.+........+.++.- +......+++.|.+++..||+|+. .+.+|||+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 358999999999999999998887532111222222 245788999999999999999999 9999999996 7789
Q ss_pred EEecCCCCCh-----------------------------hHHHHHhcccCCCCCc
Q 003260 567 IVQDVQQFGL-----------------------------AQLYQLRGRVGRADKE 592 (835)
Q Consensus 567 Ii~d~p~~sl-----------------------------~~l~Qr~GRaGR~g~~ 592 (835)
|+...|--++ ..+.|.+||+=|+...
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D 140 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDD 140 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCC
Confidence 9988772111 1345999999998643
No 188
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.39 E-value=0.0044 Score=74.37 Aligned_cols=143 Identities=23% Similarity=0.186 Sum_probs=84.8
Q ss_pred hHHHHHHHhCCCC--CCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHH--HHHHHHHHcC--CCEEEEEcccHH
Q 003260 269 PAIAEFAAQFPYE--PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA--LRAIFCVVSA--GKQAMVLAPTIV 342 (835)
Q Consensus 269 ~l~~~~~~~f~~~--ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~va--l~a~l~~l~~--g~qvlVLvPtr~ 342 (835)
.+...+...|+.. ..+.|+.|+...+. ..-.+|.|++|+|||.+. ++..+..... ...+++++||.-
T Consensus 138 ~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~-------~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgk 210 (615)
T PRK10875 138 LLRQTLDALFGPVTDEVDWQKVAAAVALT-------RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGK 210 (615)
T ss_pred HHHHHHHHhcCcCCCCCHHHHHHHHHHhc-------CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHH
Confidence 3556666666553 46899999876653 356899999999999874 3333322222 357889999999
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeecc-HHHhhc----------ccccCCccEEEE
Q 003260 343 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT-HSLLGS----------RVVYNNLGLLVV 411 (835)
Q Consensus 343 LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT-~~~L~~----------~l~~~~l~llVI 411 (835)
-|..+.+.+......++ +. ...+ . . ...-..| |..|.. .-..-.+++|||
T Consensus 211 AA~rL~e~~~~~~~~~~-~~---------~~~~----~----~-~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIv 271 (615)
T PRK10875 211 AAARLTESLGKALRQLP-LT---------DEQK----K----R-IPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVV 271 (615)
T ss_pred HHHHHHHHHHhhhhccc-cc---------hhhh----h----c-CCCchHHHHHHhCcCCCccchhhccccCCCCCeEEE
Confidence 99888877765443321 10 0000 0 0 0001111 222211 011234689999
Q ss_pred cCccccchhhHH-HHhhhcCCceEEEe
Q 003260 412 DEEQRFGVKQKE-KIASFKISVDVLTL 437 (835)
Q Consensus 412 DEaHr~g~~~~e-~l~~l~~~~~vL~l 437 (835)
||+-........ .+..++++.++|++
T Consensus 272 DEaSMvd~~lm~~ll~al~~~~rlIlv 298 (615)
T PRK10875 272 DEASMVDLPMMARLIDALPPHARVIFL 298 (615)
T ss_pred ChHhcccHHHHHHHHHhcccCCEEEEe
Confidence 999998776544 35566677777664
No 189
>PF13245 AAA_19: Part of AAA domain
Probab=97.38 E-value=0.00038 Score=60.73 Aligned_cols=47 Identities=32% Similarity=0.362 Sum_probs=39.0
Q ss_pred cEEEEccCCCcccHHHHHHHHHHHcC----CCEEEEEcccHHHHHHHHHHH
Q 003260 305 DRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~a~l~~l~~----g~qvlVLvPtr~LA~Q~~~~~ 351 (835)
-++|.||+|||||...+..+...+.. +.+++|++|++..+.++.+++
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 35669999999998877777666644 789999999999999877776
No 190
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.37 E-value=0.0011 Score=62.85 Aligned_cols=113 Identities=21% Similarity=0.174 Sum_probs=55.9
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHc------CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVS------AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKE 376 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~------~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~ 376 (835)
..-++|.|++|+|||.++-..+..... ....+.+-+|...-...++..+...++... .. ..+..+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-~~------~~~~~~l~ 76 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPL-KS------RQTSDELR 76 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SS-SS------TS-HHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccc-cc------cCCHHHHH
Confidence 356899999999999986555444322 223334445544434455555555444321 11 11111111
Q ss_pred HHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCcccc-chhhHHHHhhhc--CCceEEEeecCC
Q 003260 377 EHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRF-GVKQKEKIASFK--ISVDVLTLSATP 441 (835)
Q Consensus 377 ~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~-g~~~~e~l~~l~--~~~~vL~lSATp 441 (835)
. .+.+.+.-....+|||||+|++ .....+.+..+. .++. +.+++||
T Consensus 77 ~------------------~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~-vvl~G~~ 125 (131)
T PF13401_consen 77 S------------------LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIK-VVLVGTP 125 (131)
T ss_dssp H------------------HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEE-EEEEESS
T ss_pred H------------------HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCe-EEEEECh
Confidence 1 1111111122268999999998 655555555553 3343 4567776
No 191
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.25 E-value=0.00034 Score=80.63 Aligned_cols=127 Identities=16% Similarity=0.231 Sum_probs=102.9
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHHcCC--CEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l~~g--~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
++.|-+..+++||+...++++.+.+..| +.++|.+-+.+-|.|.+..+. .+++++|.+++|..+..+++..+++
T Consensus 358 ~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~----~~~~i~v~vIh~e~~~~qrde~~~~ 433 (593)
T KOG0344|consen 358 NETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELE----IYDNINVDVIHGERSQKQRDETMER 433 (593)
T ss_pred hhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhh----hccCcceeeEecccchhHHHHHHHH
Confidence 3455566679999999999998888776 688999999999999888775 3568999999999999999999999
Q ss_pred hhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhhhcCCceEEEeecCCChhh
Q 003260 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRT 445 (835)
Q Consensus 382 l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l~~~~~vL~lSATp~p~t 445 (835)
++.|++.++||| +.|.+.++|.++++||.+.....+.... +-|+.|+++.+..
T Consensus 434 FR~g~IwvLicT-dll~RGiDf~gvn~VInyD~p~s~~syi----------hrIGRtgRag~~g 486 (593)
T KOG0344|consen 434 FRIGKIWVLICT-DLLARGIDFKGVNLVINYDFPQSDLSYI----------HRIGRTGRAGRSG 486 (593)
T ss_pred HhccCeeEEEeh-hhhhccccccCcceEEecCCCchhHHHH----------HHhhccCCCCCCc
Confidence 999999999999 4666779999999999988776655332 2336666665543
No 192
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.25 E-value=0.0015 Score=76.07 Aligned_cols=83 Identities=22% Similarity=0.235 Sum_probs=62.8
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-CCEEEEEcccHHHHHHHHHHH
Q 003260 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 273 ~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-g~qvlVLvPtr~LA~Q~~~~~ 351 (835)
.|.....-+++.-|..|+..++.. --.||+||+|+|||.+....+...+.. +.+|||.+|....+.|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~r-------plsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQR-------PLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcC-------CceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHH
Confidence 444334448899999999999852 236999999999999865555554433 578999999999999999988
Q ss_pred HHhhcCCCCcEEEEec
Q 003260 352 SERFSKYPDIKVGLLS 367 (835)
Q Consensus 352 ~~~f~~~~gi~V~~l~ 367 (835)
.+- |++|.-+.
T Consensus 475 h~t-----gLKVvRl~ 485 (935)
T KOG1802|consen 475 HKT-----GLKVVRLC 485 (935)
T ss_pred Hhc-----CceEeeee
Confidence 763 67765544
No 193
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.21 E-value=0.0077 Score=74.20 Aligned_cols=122 Identities=20% Similarity=0.174 Sum_probs=75.5
Q ss_pred CCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHH-cCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003260 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 278 f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l-~~g~qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
..+.+++.|..|+..++. + ..-++|.|+.|+|||.+.- ++...+ ..|..|++++||--.|..+.+. .
T Consensus 349 ~~~~Ls~~Q~~Av~~i~~----s--~~~~il~G~aGTGKTtll~-~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~----~- 416 (744)
T TIGR02768 349 QHYRLSEEQYEAVRHVTG----S--GDIAVVVGRAGTGKSTMLK-AAREAWEAAGYRVIGAALSGKAAEGLQAE----S- 416 (744)
T ss_pred ccCCCCHHHHHHHHHHhc----C--CCEEEEEecCCCCHHHHHH-HHHHHHHhCCCeEEEEeCcHHHHHHHHhc----c-
Confidence 346799999999988863 1 2457999999999997743 333333 3588999999998777654321 1
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhhh--cCCceE
Q 003260 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF--KISVDV 434 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l--~~~~~v 434 (835)
|+....+++. +.....+ ...+...++|||||+-.++......+... ..+.++
T Consensus 417 ---g~~a~Ti~~~---------~~~~~~~--------------~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~~~~kl 470 (744)
T TIGR02768 417 ---GIESRTLASL---------EYAWANG--------------RDLLSDKDVLVIDEAGMVGSRQMARVLKEAEEAGAKV 470 (744)
T ss_pred ---CCceeeHHHH---------HhhhccC--------------cccCCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEE
Confidence 2332222221 0000111 11245778999999999887665554432 345665
Q ss_pred EEe
Q 003260 435 LTL 437 (835)
Q Consensus 435 L~l 437 (835)
|++
T Consensus 471 iLV 473 (744)
T TIGR02768 471 VLV 473 (744)
T ss_pred EEE
Confidence 554
No 194
>PRK04296 thymidine kinase; Provisional
Probab=97.13 E-value=0.00081 Score=68.99 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=30.9
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcc
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvP 339 (835)
+-.++.||+|+|||..++..+......+.+|+++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 346899999999999998888877778889998877
No 195
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.09 E-value=0.0055 Score=65.70 Aligned_cols=42 Identities=31% Similarity=0.418 Sum_probs=30.5
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHH
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a 323 (835)
|-+++.+.+++..+...+. ..+..++++|++|+|||..+-..
T Consensus 22 ~~~~~~~~~~~~~l~~~~~--~~~~~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 22 FYPSKGHKRAMAYLEYGLS--QREGFILITGEVGAGKTTLIRNL 63 (269)
T ss_pred hCCCHHHHHHHHHHHHHHh--cCCCEEEEEcCCCCCHHHHHHHH
Confidence 4578888888887765442 22346889999999999876544
No 196
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.01 Score=67.83 Aligned_cols=108 Identities=8% Similarity=0.210 Sum_probs=75.7
Q ss_pred CeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcC--CcCCCCCCccEEEEec
Q 003260 493 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIV--ESGLDIQNANTIIVQD 570 (835)
Q Consensus 493 gqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~ii--e~GIDIp~v~~VIi~d 570 (835)
..++|+.|+--+--.+-+++++. ++....+|-=.+...-.++-.-|..|...||+-|.-+ =+-.+|.+|..||.|.
T Consensus 553 s~~LiyIPSYfDFVRvRNy~K~e--~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYq 630 (698)
T KOG2340|consen 553 SGILIYIPSYFDFVRVRNYMKKE--EISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQ 630 (698)
T ss_pred CceEEEecchhhHHHHHHHhhhh--hcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEec
Confidence 45799999987777788888776 4444444433344455566677999999999999754 4668899999999999
Q ss_pred CCCCCh---hHHHHHhcccCCCC----CceEEEEEecCCC
Q 003260 571 VQQFGL---AQLYQLRGRVGRAD----KEAHAYLFYPDKS 603 (835)
Q Consensus 571 ~p~~sl---~~l~Qr~GRaGR~g----~~G~ay~l~~~~~ 603 (835)
+|. .+ ++++-+.+|+--.| ....|-++|+.-+
T Consensus 631 pP~-~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD 669 (698)
T KOG2340|consen 631 PPN-NPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYD 669 (698)
T ss_pred CCC-CcHHHHHHHhhhhhhhccCCccccceEEEEEeechh
Confidence 997 44 44567777754333 3467788886543
No 197
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.03 E-value=0.0019 Score=73.07 Aligned_cols=119 Identities=22% Similarity=0.270 Sum_probs=75.1
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHH--HHHHHHhhcCC
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH--FDVVSERFSKY 358 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~--~~~~~~~f~~~ 358 (835)
.+++.|++++..+++.+. ...+..+.|.|+-|+|||.+.-...-..-..+..+++++||-..|..+ -.++...|+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~-~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~-- 77 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIE-NEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFG-- 77 (364)
T ss_pred CCCHHHHHHHHHHHHHHH-ccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcC--
Confidence 478999999999988774 367789999999999999875332222223467899999999888766 445554442
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHH
Q 003260 359 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEK 424 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~ 424 (835)
+.+..... + ..-+.....+ ...+.++++|||||+=..+......
T Consensus 78 --i~~~~~~~--~----------------~~~~~~~~~~--~~~l~~~~~lIiDEism~~~~~l~~ 121 (364)
T PF05970_consen 78 --IPINNNEK--S----------------QCKISKNSRL--RERLRKADVLIIDEISMVSADMLDA 121 (364)
T ss_pred --cccccccc--c----------------cccccccchh--hhhhhhheeeecccccchhHHHHHH
Confidence 22111000 0 0000000111 1246788999999998876544443
No 198
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.99 E-value=0.03 Score=69.15 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=59.2
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-C---CEEEEEcccHHHHHHHHHHHHHhhc
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-G---KQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-g---~qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
.++|.|.+|+... ..+++|.|..|||||.+...-+...+.. + .++++++-|+..|..+.+++.+.++
T Consensus 4 ~Ln~~Q~~av~~~---------~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 4 HLNPEQREAVKTT---------EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred ccCHHHHHHHhCC---------CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 5899999997432 2468999999999999987666666543 2 4799999999999999999987655
Q ss_pred C-CCCcEEEEecC
Q 003260 357 K-YPDIKVGLLSR 368 (835)
Q Consensus 357 ~-~~gi~V~~l~g 368 (835)
. ..++.|+.+|+
T Consensus 75 ~~~~~~~i~TFHs 87 (726)
T TIGR01073 75 PVAEDIWISTFHS 87 (726)
T ss_pred cccCCcEEEcHHH
Confidence 3 22355655544
No 199
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.99 E-value=0.0011 Score=71.93 Aligned_cols=67 Identities=22% Similarity=0.265 Sum_probs=52.2
Q ss_pred CCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCC----CEEEEEcccHHHHHHHHHHHHHhhcC
Q 003260 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG----KQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 282 ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g----~qvlVLvPtr~LA~Q~~~~~~~~f~~ 357 (835)
+|+.|.+++.. . ..+++|.|..|||||.+.+.-+...+..+ .+++++++|+..|..+.+++...++.
T Consensus 1 l~~eQ~~~i~~-~--------~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS-T--------EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS----------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC-C--------CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 58899999765 2 36799999999999999877666655443 58999999999999999999886543
No 200
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.96 E-value=0.0071 Score=56.96 Aligned_cols=54 Identities=26% Similarity=0.325 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEccc
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 340 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPt 340 (835)
|...+..+...+ ....+..+++.|++|+|||..+...+......+..++++...
T Consensus 3 ~~~~~~~i~~~~-~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~ 56 (151)
T cd00009 3 QEEAIEALREAL-ELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred hHHHHHHHHHHH-hCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence 344444454443 233456799999999999977655444433334555555443
No 201
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.95 E-value=0.014 Score=60.32 Aligned_cols=124 Identities=20% Similarity=0.184 Sum_probs=70.4
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc--ccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHH-HHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA--PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK-EEHLD 380 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv--Ptr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~-~~~l~ 380 (835)
+-++++||||+|||....-.+......+++|.+++ ..|.=|.++.+.+.+.+ ++.+.......+..+. .+.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l----~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEIL----GVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHH----TEEEEESSTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHh----ccccchhhcchhhHHHHHHHHH
Confidence 45789999999999987655555444477776665 34666766666666654 4555444332222221 11111
Q ss_pred hhhcCCcceeeccHHHhhcccccCCccEEEEcCccccch--hhHHHH----hhhcCCceEEEeecCCChhhHHHHH
Q 003260 381 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV--KQKEKI----ASFKISVDVLTLSATPIPRTLYLAL 450 (835)
Q Consensus 381 ~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~--~~~e~l----~~l~~~~~vL~lSATp~p~tl~~~~ 450 (835)
....+++++|+||-+-+... ...+.+ ....+.--.+.+|||.....+....
T Consensus 78 -------------------~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~ 134 (196)
T PF00448_consen 78 -------------------KFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQAL 134 (196)
T ss_dssp -------------------HHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHH
T ss_pred -------------------HHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHH
Confidence 11234678899998876432 122222 2334555678899998777665443
No 202
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.95 E-value=0.034 Score=75.05 Aligned_cols=235 Identities=15% Similarity=0.164 Sum_probs=125.5
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHH-cCCCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003260 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 279 ~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l-~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~ 357 (835)
.+.+++.|.+|+..++.. ..+-.+|.|+.|+|||.+. .++...+ ..|.+|++++||-.-|.++.+...
T Consensus 427 ~~~Ls~~Q~~Av~~il~s-----~~~v~ii~G~aGTGKTt~l-~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~g----- 495 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTS-----TKRFIIINGFGGTGSTEIA-QLLLHLASEQGYEIQIITAGSLSAQELRQKIP----- 495 (1960)
T ss_pred cCCCCHHHHHHHHHHHhC-----CCCeEEEEECCCCCHHHHH-HHHHHHHHhcCCeEEEEeCCHHHHHHHHHHhc-----
Confidence 468999999999988752 2456799999999999874 3333333 358899999999987766544321
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccH-HHhhcccccCCccEEEEcCccccchhhHHHHhhh--cCCceE
Q 003260 358 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH-SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF--KISVDV 434 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~-~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l--~~~~~v 434 (835)
+....++ ..+..+..+ .-..|- +.+....++..-++|||||+-.++......|... ..+.++
T Consensus 496 ---~~A~Ti~---------~~l~~l~~~---~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~~garv 560 (1960)
T TIGR02760 496 ---RLASTFI---------TWVKNLFND---DQDHTVQGLLDKSSPFSNKDIFVVDEANKLSNNELLKLIDKAEQHNSKL 560 (1960)
T ss_pred ---chhhhHH---------HHHHhhccc---ccchhHHHhhcccCCCCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCEE
Confidence 1111111 111111111 011111 2222233456778999999999988776666543 367888
Q ss_pred EEeecCC------ChhhHHHHHh-cCCCcceecCCCCCccceeEEeccc-CHH---HHHHHHHHHHhcCCeEEEEecCcc
Q 003260 435 LTLSATP------IPRTLYLALT-GFRDASLISTPPPERLPIKTHLSAF-SKE---KVISAIKYELDRGGQVFYVLPRIK 503 (835)
Q Consensus 435 L~lSATp------~p~tl~~~~~-g~~d~s~I~~~p~~r~~v~~~~~~~-~~~---~l~~~i~~~l~~ggqvlVf~n~v~ 503 (835)
|++-=+- .-..+..... ++....+..+ .....++ .+... +.. .+.+..........+++++.++..
T Consensus 561 VlvGD~~QL~sV~aG~~f~~L~~~gv~t~~l~~i-~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv~~t~~ 637 (1960)
T TIGR02760 561 ILLNDSAQRQGMSAGSAIDLLKEGGVTTYAWVDT-KQQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVLATTHR 637 (1960)
T ss_pred EEEcChhhcCccccchHHHHHHHCCCcEEEeecc-cccCcce--eeeccCchHHHHHHHHHHHhcccccCceEEEcCCcH
Confidence 8754431 1122222222 2211111111 1111122 12222 222 233333333334446888888888
Q ss_pred ChHHHHHHHHhhC--------CCCeEEEEe-CCCCHHHHHHHHHHhhcC
Q 003260 504 GLEEPMDFLQQAF--------PGVDIAIAH-GQQYSRQLEETMEKFAQG 543 (835)
Q Consensus 504 ~~e~l~~~L~~~~--------p~~~v~~lh-g~m~~~ere~vl~~F~~g 543 (835)
+...+...++..+ ++..+..+. ..|+..++... ..|+.|
T Consensus 638 dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 638 EQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred HHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 8888877776643 123333333 34666666533 455544
No 203
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.013 Score=66.66 Aligned_cols=122 Identities=12% Similarity=0.093 Sum_probs=68.3
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHH----cCCCEEEEEc--ccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVV----SAGKQAMVLA--PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 375 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l----~~g~qvlVLv--Ptr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~ 375 (835)
.+..++++||||+|||.++.-.+.... ..+..|.++. +.|.-+..+...+.+.+ |+.+..... ..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~l----gvpv~~~~~---~~~- 244 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIM----GIPVKAIES---FKD- 244 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcC----CcceEeeCc---HHH-
Confidence 356789999999999998754443322 2356666554 34555555555544432 444433221 111
Q ss_pred HHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchh--hHHHH----hhhcCC-ceEEEeecCCChhhHHH
Q 003260 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVK--QKEKI----ASFKIS-VDVLTLSATPIPRTLYL 448 (835)
Q Consensus 376 ~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~--~~e~l----~~l~~~-~~vL~lSATp~p~tl~~ 448 (835)
.. ..+. .+.++++||||++.+.... +...+ .....+ -.++.+|||.....+..
T Consensus 245 --l~---------------~~L~---~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~ 304 (388)
T PRK12723 245 --LK---------------EEIT---QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKE 304 (388)
T ss_pred --HH---------------HHHH---HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHH
Confidence 00 0111 2467899999999986422 12222 222223 35788999987776654
Q ss_pred HHh
Q 003260 449 ALT 451 (835)
Q Consensus 449 ~~~ 451 (835)
...
T Consensus 305 ~~~ 307 (388)
T PRK12723 305 IFH 307 (388)
T ss_pred HHH
Confidence 443
No 204
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.84 E-value=0.021 Score=71.74 Aligned_cols=123 Identities=20% Similarity=0.180 Sum_probs=76.9
Q ss_pred CCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc-CCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003260 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 278 f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~-~g~qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
..+.+++.|.+|+..++.. ..-++|.|..|+|||.+ +.++...+. .|.+|+.++||-..|..+. +.
T Consensus 343 ~g~~Ls~eQr~Av~~il~s------~~v~vv~G~AGTGKTT~-l~~~~~~~e~~G~~V~~~ApTGkAA~~L~----e~-- 409 (988)
T PRK13889 343 RGLVLSGEQADALAHVTDG------RDLGVVVGYAGTGKSAM-LGVAREAWEAAGYEVRGAALSGIAAENLE----GG-- 409 (988)
T ss_pred cCCCCCHHHHHHHHHHhcC------CCeEEEEeCCCCCHHHH-HHHHHHHHHHcCCeEEEecCcHHHHHHHh----hc--
Confidence 4578999999999988641 23478999999999987 444444443 4889999999987765532 21
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhhh--cCCceE
Q 003260 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF--KISVDV 434 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l--~~~~~v 434 (835)
.|+....++++ +.....+ ...+...++|||||+-.++..+...+... ..+.++
T Consensus 410 --tGi~a~TI~sl---------l~~~~~~--------------~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~~garv 464 (988)
T PRK13889 410 --SGIASRTIASL---------EHGWGQG--------------RDLLTSRDVLVIDEAGMVGTRQLERVLSHAADAGAKV 464 (988)
T ss_pred --cCcchhhHHHH---------Hhhhccc--------------ccccccCcEEEEECcccCCHHHHHHHHHhhhhCCCEE
Confidence 12322111111 0000011 11245678999999999888776665432 345666
Q ss_pred EEee
Q 003260 435 LTLS 438 (835)
Q Consensus 435 L~lS 438 (835)
|++-
T Consensus 465 VLVG 468 (988)
T PRK13889 465 VLVG 468 (988)
T ss_pred EEEC
Confidence 6543
No 205
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.81 E-value=0.0085 Score=72.00 Aligned_cols=135 Identities=21% Similarity=0.292 Sum_probs=79.7
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcC-C-CEEEEEcccHHHHHHHH---HHHHHhh-cC-CCCcEEEEecCCCCHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSA-G-KQAMVLAPTIVLAKQHF---DVVSERF-SK-YPDIKVGLLSRFQSKAEK 375 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~-g-~qvlVLvPtr~LA~Q~~---~~~~~~f-~~-~~gi~V~~l~g~~s~~e~ 375 (835)
.-++=|.+.||+|||.+|+..++..-.. | .+.+|+||+.+.-.-++ ....+.| +. +.+.+...+..... ..
T Consensus 74 ~lNiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~-~~- 151 (985)
T COG3587 74 KLNIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDED-IE- 151 (985)
T ss_pred cceeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechH-HH-
Confidence 4567788999999999999999876443 2 47899999987654422 2233334 21 22233333322211 11
Q ss_pred HHHHHhhhcCCcceeeccHHHhhcc-----------cccCCc---------------cEEEEcCccccch--hhHHHHhh
Q 003260 376 EEHLDMIKHGHLNIIVGTHSLLGSR-----------VVYNNL---------------GLLVVDEEQRFGV--KQKEKIAS 427 (835)
Q Consensus 376 ~~~l~~l~~G~~dIIVgT~~~L~~~-----------l~~~~l---------------~llVIDEaHr~g~--~~~e~l~~ 427 (835)
...--.++.+.|++.|-+.+.+. +...++ -+|||||-|+|.. .....+..
T Consensus 152 --~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~~k~~~~i~~ 229 (985)
T COG3587 152 --KFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGDDKTYGAIKQ 229 (985)
T ss_pred --HHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccchHHHHHHHh
Confidence 11222345577888776655432 111121 2599999999955 45555666
Q ss_pred hcCCceEEEeecCCC
Q 003260 428 FKISVDVLTLSATPI 442 (835)
Q Consensus 428 l~~~~~vL~lSATp~ 442 (835)
+ .+.-++=++||..
T Consensus 230 l-~pl~ilRfgATfk 243 (985)
T COG3587 230 L-NPLLILRFGATFK 243 (985)
T ss_pred h-CceEEEEecccch
Confidence 5 3445677999964
No 206
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.78 E-value=0.03 Score=70.91 Aligned_cols=122 Identities=20% Similarity=0.156 Sum_probs=78.0
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHH-cCCCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003260 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 279 ~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l-~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~ 357 (835)
.+.+++.|.+|+..+.. ..+-.+|.|+.|+|||.+. .++...+ ..|.+|+.++||---|..+. +..
T Consensus 379 ~~~Ls~eQ~~Av~~i~~------~~r~~~v~G~AGTGKTt~l-~~~~~~~e~~G~~V~g~ApTgkAA~~L~----e~~-- 445 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAG------PARIAAVVGRAGAGKTTMM-KAAREAWEAAGYRVVGGALAGKAAEGLE----KEA-- 445 (1102)
T ss_pred CCCCCHHHHHHHHHHhc------cCCeEEEEeCCCCCHHHHH-HHHHHHHHHcCCeEEEEcCcHHHHHHHH----Hhh--
Confidence 57899999999988742 1356799999999999874 3333333 35889999999987776542 211
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhhh--cCCceEE
Q 003260 358 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF--KISVDVL 435 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l--~~~~~vL 435 (835)
|+....+.++. .....| ...+..-++|||||+...+..+...+... ..+.++|
T Consensus 446 --Gi~a~TIas~l---------l~~~~~--------------~~~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~~~garvV 500 (1102)
T PRK13826 446 --GIQSRTLSSWE---------LRWNQG--------------RDQLDNKTVFVLDEAGMVASRQMALFVEAVTRAGAKLV 500 (1102)
T ss_pred --CCCeeeHHHHH---------hhhccC--------------ccCCCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEE
Confidence 44444443321 000011 12345667999999999988776655443 2456666
Q ss_pred Eee
Q 003260 436 TLS 438 (835)
Q Consensus 436 ~lS 438 (835)
++-
T Consensus 501 LVG 503 (1102)
T PRK13826 501 LVG 503 (1102)
T ss_pred EEC
Confidence 543
No 207
>PRK08181 transposase; Validated
Probab=96.75 E-value=0.025 Score=61.34 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=47.7
Q ss_pred CCCChHHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHH
Q 003260 265 YPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLA 344 (835)
Q Consensus 265 ~~~~~l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA 344 (835)
||...-.+.|.-.+...+.+.|..++..+.+.. ..+.+++++||+|+|||-.+...+..+...|..|+++ +...|.
T Consensus 71 ~p~~~tle~fd~~~~~~~~~~~~~~L~~~~~~~---~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~-~~~~L~ 146 (269)
T PRK08181 71 LPPGKTLDSFDFEAVPMVSKAQVMAIAAGDSWL---AKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT-RTTDLV 146 (269)
T ss_pred CCCCCCHhhCCccCCCCCCHHHHHHHHHHHHHH---hcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee-eHHHHH
Confidence 343333344332223345678888776543322 2357899999999999987765555566677777665 344555
Q ss_pred HHH
Q 003260 345 KQH 347 (835)
Q Consensus 345 ~Q~ 347 (835)
.+.
T Consensus 147 ~~l 149 (269)
T PRK08181 147 QKL 149 (269)
T ss_pred HHH
Confidence 543
No 208
>PRK06526 transposase; Provisional
Probab=96.74 E-value=0.0073 Score=64.93 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=28.8
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEE
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVL 337 (835)
.+.+++++||+|+|||..+...+......|..|++.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~ 132 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA 132 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence 357899999999999998876666666678777664
No 209
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.73 E-value=0.0036 Score=58.29 Aligned_cols=42 Identities=24% Similarity=0.174 Sum_probs=28.7
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLA 344 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA 344 (835)
+..++++||+|+|||..+...+......+..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc
Confidence 356899999999999887655544433333577777765443
No 210
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.72 E-value=0.0041 Score=65.06 Aligned_cols=83 Identities=24% Similarity=0.377 Sum_probs=43.5
Q ss_pred CccEEEEcCccccchhhHHHHhhhcCCceE-EEeecCCChhhHHHH-----HhcC-CCcceecCCCCCccceeEEecccC
Q 003260 405 NLGLLVVDEEQRFGVKQKEKIASFKISVDV-LTLSATPIPRTLYLA-----LTGF-RDASLISTPPPERLPIKTHLSAFS 477 (835)
Q Consensus 405 ~l~llVIDEaHr~g~~~~e~l~~l~~~~~v-L~lSATp~p~tl~~~-----~~g~-~d~s~I~~~p~~r~~v~~~~~~~~ 477 (835)
.-+++.|||.|||.-.+.+.+-..-.+..+ +...++|..++..+- +.|. .....+..|-..|+.+...+..++
T Consensus 101 ~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~ 180 (233)
T PF05496_consen 101 EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYS 180 (233)
T ss_dssp TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----T
T ss_pred CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCC
Confidence 446899999999987766665444344444 555666544332111 1111 112234445567888887888888
Q ss_pred HHHHHHHHHH
Q 003260 478 KEKVISAIKY 487 (835)
Q Consensus 478 ~~~l~~~i~~ 487 (835)
.+++...+.+
T Consensus 181 ~~el~~Iv~r 190 (233)
T PF05496_consen 181 EEELAKIVKR 190 (233)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877777665
No 211
>PRK14974 cell division protein FtsY; Provisional
Probab=96.71 E-value=0.064 Score=59.99 Aligned_cols=126 Identities=15% Similarity=0.144 Sum_probs=68.3
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEccc--HH-HHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT--IV-LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPt--r~-LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~ 378 (835)
++.-++++|++|+|||.+....+......|..|+++... |. ...|+ ..+...+ |+.+.....+.++... .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL-~~~a~~l----gv~v~~~~~g~dp~~v--~ 211 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQL-EEHAERL----GVKVIKHKYGADPAAV--A 211 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHH-HHHHHHc----CCceecccCCCCHHHH--H
Confidence 356788999999999998655554444556777776543 33 33443 3333333 3443322211111110 0
Q ss_pred HHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccch--hhHHHHhh----hcCCceEEEeecCCChhhHHHHH
Q 003260 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV--KQKEKIAS----FKISVDVLTLSATPIPRTLYLAL 450 (835)
Q Consensus 379 l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~--~~~e~l~~----l~~~~~vL~lSATp~p~tl~~~~ 450 (835)
. ..+. .....++++|+||.+++... ...+.+.. ..++..++.++||........+.
T Consensus 212 ~---------------~ai~-~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~ 273 (336)
T PRK14974 212 Y---------------DAIE-HAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAR 273 (336)
T ss_pred H---------------HHHH-HHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHH
Confidence 0 0010 01224678999999998742 22333332 34566788899987655554443
No 212
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.69 E-value=0.0089 Score=72.46 Aligned_cols=93 Identities=12% Similarity=0.152 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcC
Q 003260 478 KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 557 (835)
Q Consensus 478 ~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~G 557 (835)
.+.++.++...+..|+++||.+|.+..+..+.+.|+..|++..++++|+++++.+|.+.+.+..+|+.+|+|+|-.+--
T Consensus 174 Tevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF- 252 (665)
T PRK14873 174 ARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF- 252 (665)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-
Confidence 4567888888899999999999999999999999999997678999999999999999999999999999999986532
Q ss_pred CCCCCccEEEEecC
Q 003260 558 LDIQNANTIIVQDV 571 (835)
Q Consensus 558 IDIp~v~~VIi~d~ 571 (835)
.=++|...||+.+-
T Consensus 253 aP~~~LgLIIvdEE 266 (665)
T PRK14873 253 APVEDLGLVAIWDD 266 (665)
T ss_pred eccCCCCEEEEEcC
Confidence 34667778887654
No 213
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.64 E-value=0.012 Score=71.19 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=40.9
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHH
Q 003260 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 273 ~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l 325 (835)
.+.-.|||+|+|.|..-+..++..+. +..+.++..|||+|||+..|-..+
T Consensus 13 Gv~V~fP~qpY~~Q~a~M~rvl~~L~---~~q~~llESPTGTGKSLsLLCS~L 62 (945)
T KOG1132|consen 13 GVPVEFPFQPYPTQLAFMTRVLSCLD---RKQNGLLESPTGTGKSLSLLCSTL 62 (945)
T ss_pred CceeeccCCcchHHHHHHHHHHHHHH---HhhhhhccCCCCCCccHHHHHHHH
Confidence 44457999999999999999998774 356789999999999999765444
No 214
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.63 E-value=0.019 Score=64.33 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=28.5
Q ss_pred cEEEEcCccccchhhHHHHhhhcCCceEEEeecCC
Q 003260 407 GLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441 (835)
Q Consensus 407 ~llVIDEaHr~g~~~~e~l~~l~~~~~vL~lSATp 441 (835)
-+|+|||+|||.-.|...+.-.-.+..+++.-||-
T Consensus 106 tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATT 140 (436)
T COG2256 106 TILFLDEIHRFNKAQQDALLPHVENGTIILIGATT 140 (436)
T ss_pred eEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccC
Confidence 47899999999887777776666778888888884
No 215
>PRK10689 transcription-repair coupling factor; Provisional
Probab=96.57 E-value=0.0089 Score=76.61 Aligned_cols=95 Identities=17% Similarity=0.311 Sum_probs=81.9
Q ss_pred HHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccc
Q 003260 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV 402 (835)
Q Consensus 323 a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~ 402 (835)
.++..+..+.+++|++|++.-+...++.+.+.+ |+.+|..++|..+..++...+..+.+|+++|+|+| ..+...++
T Consensus 801 ~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~---p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT-dIierGID 876 (1147)
T PRK10689 801 AILREILRGGQVYYLYNDVENIQKAAERLAELV---PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-TIIETGID 876 (1147)
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC---CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC-chhhcccc
Confidence 344555668899999999998888888887653 56789999999999999999999999999999999 46777889
Q ss_pred cCCccEEEEcCccccchhh
Q 003260 403 YNNLGLLVVDEEQRFGVKQ 421 (835)
Q Consensus 403 ~~~l~llVIDEaHr~g~~~ 421 (835)
+.++++||++.+++|+..+
T Consensus 877 IP~v~~VIi~~ad~fglaq 895 (1147)
T PRK10689 877 IPTANTIIIERADHFGLAQ 895 (1147)
T ss_pred cccCCEEEEecCCCCCHHH
Confidence 9999999999999998654
No 216
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=96.55 E-value=0.0095 Score=74.75 Aligned_cols=94 Identities=17% Similarity=0.285 Sum_probs=81.4
Q ss_pred HHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccccc
Q 003260 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVY 403 (835)
Q Consensus 324 ~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~ 403 (835)
+...+..+.+++|++|++.-+...++.+++.+ |+.+|..++|..+..++...+..+.+|+.+|+|+|. .+...+++
T Consensus 653 i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~---p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-iie~GIDI 728 (926)
T TIGR00580 653 IRRELLRGGQVFYVHNRIESIEKLATQLRELV---PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-IIETGIDI 728 (926)
T ss_pred HHHHHHcCCeEEEEECCcHHHHHHHHHHHHhC---CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-hhhccccc
Confidence 34455678999999999988888888887643 578999999999999999999999999999999994 67778899
Q ss_pred CCccEEEEcCccccchhh
Q 003260 404 NNLGLLVVDEEQRFGVKQ 421 (835)
Q Consensus 404 ~~l~llVIDEaHr~g~~~ 421 (835)
.++++||++.++++|..+
T Consensus 729 p~v~~VIi~~a~~~gls~ 746 (926)
T TIGR00580 729 PNANTIIIERADKFGLAQ 746 (926)
T ss_pred ccCCEEEEecCCCCCHHH
Confidence 999999999999988654
No 217
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.54 E-value=0.045 Score=64.01 Aligned_cols=40 Identities=23% Similarity=0.150 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l 325 (835)
|..+...+...+..+.-+...|++||+|+|||..+...+-
T Consensus 19 q~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 19 QDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4444444443332333334579999999999998755443
No 218
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.46 E-value=0.011 Score=72.41 Aligned_cols=96 Identities=22% Similarity=0.411 Sum_probs=81.2
Q ss_pred HHHhcCCeEEEEecCccChHHHHHHHHhhCC--CCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcC-cCCcCCCCCCc
Q 003260 487 YELDRGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-IVESGLDIQNA 563 (835)
Q Consensus 487 ~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p--~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~-iie~GIDIp~v 563 (835)
..+..+.+++|.+|+..-+...++.+++.++ ++++..+||+++..++..++..+.+|+.+|+|+|. .+...+.++++
T Consensus 305 ~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l 384 (681)
T PRK10917 305 AAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNL 384 (681)
T ss_pred HHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhccc
Confidence 3345688999999999999988888887765 47899999999999999999999999999999998 45667889999
Q ss_pred cEEEEecCCCCChhHHHHH
Q 003260 564 NTIIVQDVQQFGLAQLYQL 582 (835)
Q Consensus 564 ~~VIi~d~p~~sl~~l~Qr 582 (835)
.+||+...++|+..+....
T Consensus 385 ~lvVIDE~Hrfg~~qr~~l 403 (681)
T PRK10917 385 GLVIIDEQHRFGVEQRLAL 403 (681)
T ss_pred ceEEEechhhhhHHHHHHH
Confidence 9999988888876554433
No 219
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.46 E-value=0.058 Score=57.69 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=37.2
Q ss_pred CHhHHHHHHHHHHhhhcC-CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEE
Q 003260 283 TPDQKKAFLDVERDLTER-ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 283 tp~Q~~AI~~il~dl~~~-~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVL 337 (835)
++.|..|+..+.+-.... .....++++|++|+|||..+...+......+..|+++
T Consensus 78 ~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 78 CEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred CchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 567877877666432111 1124689999999999988766555555667777766
No 220
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.43 E-value=0.063 Score=63.24 Aligned_cols=43 Identities=21% Similarity=0.115 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHH
Q 003260 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
-|..++..+...+..+.-+...|++||.|+|||.++...+-..
T Consensus 25 Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 25 GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4666666665544444445679999999999999876554433
No 221
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.42 E-value=0.015 Score=70.81 Aligned_cols=125 Identities=21% Similarity=0.208 Sum_probs=80.8
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCC
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP 359 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~ 359 (835)
..++.+|++|+..++.. ..-.||.|=+|+|||.+....+-..+..|++||+.+-|...+..+.-.++. +
T Consensus 668 ~~LN~dQr~A~~k~L~a------edy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~-~---- 736 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAA------EDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKG-F---- 736 (1100)
T ss_pred hhcCHHHHHHHHHHHhc------cchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhc-c----
Confidence 37899999998888752 234699999999999987666655566799999999998877777666554 2
Q ss_pred CcEEEEecCCC---------------CHHHHHHHHHhhhcCCcceeeccHHHhhccc-ccCCccEEEEcCcccc
Q 003260 360 DIKVGLLSRFQ---------------SKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-VYNNLGLLVVDEEQRF 417 (835)
Q Consensus 360 gi~V~~l~g~~---------------s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l-~~~~l~llVIDEaHr~ 417 (835)
++.+.-+.... +.+.... ++... +.+.||.+|---+.+.+ ..+.+++.|||||-.+
T Consensus 737 ~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~-l~~~~-~~~~IVa~TClgi~~plf~~R~FD~cIiDEASQI 808 (1100)
T KOG1805|consen 737 GIYILRLGSEEKIHPDVEEFTLTNETSEKSYAD-LKKFL-DQTSIVACTCLGINHPLFVNRQFDYCIIDEASQI 808 (1100)
T ss_pred CcceeecCCccccchHHHHHhcccccchhhHHH-HHHHh-CCCcEEEEEccCCCchhhhccccCEEEEcccccc
Confidence 33332222211 1111111 11111 45788888853333322 2367999999999865
No 222
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.39 E-value=0.06 Score=61.06 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=63.7
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcc--cHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP--TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvP--tr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~ 380 (835)
+..++++||||+|||..+...+......|+++.++.- -|.-+.+....+.+.. ++.+.... +...-...+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~l----gipv~v~~---d~~~L~~aL~ 313 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTI----GFEVIAVR---DEAAMTRALT 313 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhc----CCcEEecC---CHHHHHHHHH
Confidence 4678999999999999876655555566777765543 3433333333333322 33333221 1111111111
Q ss_pred hhhcCCcceeeccHHHhhcccccCCccEEEEcCccccch--hhH----HHHhhhcCCceEEEeecCCChhhHHHHH
Q 003260 381 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV--KQK----EKIASFKISVDVLTLSATPIPRTLYLAL 450 (835)
Q Consensus 381 ~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~--~~~----e~l~~l~~~~~vL~lSATp~p~tl~~~~ 450 (835)
.+. ...++++|+||-+=+... ... +.+....+..-++.+|||...+......
T Consensus 314 ~lk------------------~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~ 371 (436)
T PRK11889 314 YFK------------------EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 371 (436)
T ss_pred HHH------------------hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHH
Confidence 111 012578899998866421 112 2222223444467799987666544333
No 223
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.39 E-value=0.012 Score=71.42 Aligned_cols=95 Identities=20% Similarity=0.404 Sum_probs=81.3
Q ss_pred HHHHHhcCCeEEEEecCccChHHHHHHHHhhCC--CCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCc-CCcCCCCC
Q 003260 485 IKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-VESGLDIQ 561 (835)
Q Consensus 485 i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p--~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~i-ie~GIDIp 561 (835)
+...+..+.+++|.+|+..-+++.++.+++.++ ++++..+||+++..++..+++...+|+.+|+|+|.. +...+++.
T Consensus 277 il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~ 356 (630)
T TIGR00643 277 MLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFK 356 (630)
T ss_pred HHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcccccc
Confidence 334455688999999999999999888888775 689999999999999999999999999999999984 55678889
Q ss_pred CccEEEEecCCCCChhHH
Q 003260 562 NANTIIVQDVQQFGLAQL 579 (835)
Q Consensus 562 ~v~~VIi~d~p~~sl~~l 579 (835)
++.+||+...++|+..+.
T Consensus 357 ~l~lvVIDEaH~fg~~qr 374 (630)
T TIGR00643 357 RLALVIIDEQHRFGVEQR 374 (630)
T ss_pred ccceEEEechhhccHHHH
Confidence 999999988888876654
No 224
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.30 E-value=0.027 Score=59.70 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcc
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvP 339 (835)
+..++..+.+-. ....+..++++||+|+|||-.+...+......+.+++++.-
T Consensus 29 n~~a~~~l~~~~-~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 29 NDSLLAALQNAL-RQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred cHHHHHHHHHHH-hCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 344544443322 23345689999999999997765444444445666666543
No 225
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.27 E-value=0.039 Score=64.23 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=60.0
Q ss_pred EEccCCCcccHHHHHHHHHHHcCCC-EEEEEcccHHHHHHHHHHHHHhhcC-C----------CCcEEEEecCCCCHHHH
Q 003260 308 ICGDVGFGKTEVALRAIFCVVSAGK-QAMVLAPTIVLAKQHFDVVSERFSK-Y----------PDIKVGLLSRFQSKAEK 375 (835)
Q Consensus 308 l~a~TGsGKT~val~a~l~~l~~g~-qvlVLvPtr~LA~Q~~~~~~~~f~~-~----------~gi~V~~l~g~~s~~e~ 375 (835)
..+.||||||++....++.+...|. ..++.|.......-....|..-.+. + ..+.+.-+..+..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fse---- 77 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSE---- 77 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCc----
Confidence 3578999999998888888888874 5677777665555544443321110 0 0122333332211
Q ss_pred HHHHHhhhcCCcceeeccHHHhhccc-----------ccCCccEE-EEcCccccch
Q 003260 376 EEHLDMIKHGHLNIIVGTHSLLGSRV-----------VYNNLGLL-VVDEEQRFGV 419 (835)
Q Consensus 376 ~~~l~~l~~G~~dIIVgT~~~L~~~l-----------~~~~l~ll-VIDEaHr~g~ 419 (835)
.+..+.|+++|-+.|..++ .+.+..+| +-||+|++..
T Consensus 78 -------hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 78 -------HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred -------cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 1234789999988775322 34555654 5599999743
No 226
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=96.25 E-value=0.019 Score=71.88 Aligned_cols=98 Identities=14% Similarity=0.264 Sum_probs=84.6
Q ss_pred HHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCC
Q 003260 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNN 405 (835)
Q Consensus 326 ~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~ 405 (835)
.-+.+|+||.|+.|..+=..+..+.+++. .|..+|++.||..+..+-++......+|++||+|||- .+-..++..+
T Consensus 798 REl~RgGQvfYv~NrV~~Ie~~~~~L~~L---VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-IIEtGIDIPn 873 (1139)
T COG1197 798 RELLRGGQVFYVHNRVESIEKKAERLREL---VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-IIETGIDIPN 873 (1139)
T ss_pred HHHhcCCEEEEEecchhhHHHHHHHHHHh---CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-eeecCcCCCC
Confidence 33567999999999999999999999875 4678999999999999999999999999999999994 4445677889
Q ss_pred ccEEEEcCccccchhhHHHHhh
Q 003260 406 LGLLVVDEEQRFGVKQKEKIAS 427 (835)
Q Consensus 406 l~llVIDEaHr~g~~~~e~l~~ 427 (835)
-..|||+-||+||..|.-.|+-
T Consensus 874 ANTiIIe~AD~fGLsQLyQLRG 895 (1139)
T COG1197 874 ANTIIIERADKFGLAQLYQLRG 895 (1139)
T ss_pred CceEEEeccccccHHHHHHhcc
Confidence 9999999999999887666543
No 227
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.22 E-value=0.019 Score=66.70 Aligned_cols=42 Identities=21% Similarity=0.175 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH
Q 003260 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~ 326 (835)
.|..++..+...+..+.-+...|++||.|+|||.++...+-.
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 366666666554433333445799999999999987655443
No 228
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.22 E-value=0.02 Score=67.57 Aligned_cols=90 Identities=23% Similarity=0.315 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCC
Q 003260 481 VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560 (835)
Q Consensus 481 l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDI 560 (835)
.+.++...+..+++++|++|++.-+.++++.|++.+ +..+.++||+++..+|.+++.+..+|+.+|+|+|..+-. ..+
T Consensus 14 ~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f-~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~ 91 (505)
T TIGR00595 14 YLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRF-GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPF 91 (505)
T ss_pred HHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh-CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-Ccc
Confidence 445666677789999999999999999999999887 467899999999999999999999999999999985432 457
Q ss_pred CCccEEEEecCC
Q 003260 561 QNANTIIVQDVQ 572 (835)
Q Consensus 561 p~v~~VIi~d~p 572 (835)
+++..||+....
T Consensus 92 ~~l~lIIVDEeh 103 (505)
T TIGR00595 92 KNLGLIIVDEEH 103 (505)
T ss_pred cCCCEEEEECCC
Confidence 788888876654
No 229
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.21 E-value=0.023 Score=69.40 Aligned_cols=89 Identities=22% Similarity=0.305 Sum_probs=74.5
Q ss_pred HHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCC
Q 003260 483 SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562 (835)
Q Consensus 483 ~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~ 562 (835)
..+...+..+.+++|++|+++-+.++.+.+++.+ +..+..+||+++..++.+.+.+..+|+.+|+|+|..+-. +.+++
T Consensus 181 ~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~f-g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~ 258 (679)
T PRK05580 181 QAIAEVLAQGKQALVLVPEIALTPQMLARFRARF-GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKN 258 (679)
T ss_pred HHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh-CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccC
Confidence 4455556678899999999999999999999877 568999999999999999999999999999999985432 56778
Q ss_pred ccEEEEecCCC
Q 003260 563 ANTIIVQDVQQ 573 (835)
Q Consensus 563 v~~VIi~d~p~ 573 (835)
+.+||+.....
T Consensus 259 l~liVvDEeh~ 269 (679)
T PRK05580 259 LGLIIVDEEHD 269 (679)
T ss_pred CCEEEEECCCc
Confidence 88888876543
No 230
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.19 E-value=0.085 Score=57.34 Aligned_cols=52 Identities=23% Similarity=0.252 Sum_probs=35.5
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc--ccHHHHHHHHHHHHHh
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA--PTIVLAKQHFDVVSER 354 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv--Ptr~LA~Q~~~~~~~~ 354 (835)
++-++++|++|+|||.++...+......|.+|+++. +.|.-+.+....+.+.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~ 125 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKR 125 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 456778999999999987666655556677887775 3455555544445443
No 231
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.18 E-value=0.033 Score=67.17 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~ 326 (835)
|..++..+.+.+..+.-+..+|++||.|+|||..+...+-.
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 66666666555544333556899999999999987655443
No 232
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.17 E-value=0.075 Score=64.17 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~ 326 (835)
|..++..+.+.+..+.-+.-.|++|+.|+|||.++...+-.
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~ 61 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKG 61 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 66666666665543333334689999999999987555443
No 233
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.10 E-value=0.028 Score=68.38 Aligned_cols=90 Identities=22% Similarity=0.288 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcC
Q 003260 478 KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 557 (835)
Q Consensus 478 ~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~G 557 (835)
.+..+++|.+.+..|.|+|+.+|.+.....+.+.++..|. .+++++|+++++.+|.....+..+|+.+|+|+|-.+--
T Consensus 231 TEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF- 308 (730)
T COG1198 231 TEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG-AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF- 308 (730)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC-CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-
Confidence 3678899999999999999999999999999999999995 89999999999999999999999999999999986532
Q ss_pred CCCCCccEEEEe
Q 003260 558 LDIQNANTIIVQ 569 (835)
Q Consensus 558 IDIp~v~~VIi~ 569 (835)
.=++|+..||+.
T Consensus 309 ~Pf~~LGLIIvD 320 (730)
T COG1198 309 LPFKNLGLIIVD 320 (730)
T ss_pred CchhhccEEEEe
Confidence 345677777763
No 234
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.09 E-value=0.045 Score=64.64 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
|..++..+.+.+..+.-+.-.|++||.|+|||.++...+-..
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 666666666555443344557999999999999876555443
No 235
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.97 E-value=0.068 Score=61.71 Aligned_cols=123 Identities=17% Similarity=0.138 Sum_probs=65.5
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHH--cCCCEEEEEc--ccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVV--SAGKQAMVLA--PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l--~~g~qvlVLv--Ptr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~ 378 (835)
++.++++||||+|||..+...+.... ..+.+|.++. |.+.-+.+....+.+.+ ++.+..... ..+ .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~----~vp~~~~~~---~~~---l 290 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIM----GIPVEVVYD---PKE---L 290 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHh----CCceEccCC---HHh---H
Confidence 45788999999999988765544443 4466666654 33443333333333322 333332221 111 0
Q ss_pred HHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccch--hhHHHHhhh-----cCCceEEEeecCCChhhHHHHHh
Q 003260 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV--KQKEKIASF-----KISVDVLTLSATPIPRTLYLALT 451 (835)
Q Consensus 379 l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~--~~~e~l~~l-----~~~~~vL~lSATp~p~tl~~~~~ 451 (835)
. ..+. .+.++++||||.+-+... ...+.+..+ .+....+.+|||..+..+.....
T Consensus 291 ~---------------~~l~---~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~ 352 (424)
T PRK05703 291 A---------------KALE---QLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYK 352 (424)
T ss_pred H---------------HHHH---HhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHH
Confidence 0 0111 234679999999866422 112222222 12234788999998877765544
Q ss_pred cC
Q 003260 452 GF 453 (835)
Q Consensus 452 g~ 453 (835)
.+
T Consensus 353 ~f 354 (424)
T PRK05703 353 HF 354 (424)
T ss_pred Hh
Confidence 43
No 236
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.94 E-value=0.047 Score=63.90 Aligned_cols=41 Identities=27% Similarity=0.356 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~ 326 (835)
|..++..+.+.+..+.-+...|++||.|+|||.++...+..
T Consensus 18 Qe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 18 QDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 55555545444434444567999999999999987655443
No 237
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.93 E-value=0.16 Score=60.98 Aligned_cols=164 Identities=15% Similarity=0.103 Sum_probs=94.2
Q ss_pred HhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc-CCCEEEEEcccHHHHHHHHHHHHHh
Q 003260 276 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSER 354 (835)
Q Consensus 276 ~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~-~g~qvlVLvPtr~LA~Q~~~~~~~~ 354 (835)
.-.|.-|+|.=.+=|+++.+... .+-.++.+|=|.|||.+..+.+...+. .|..++|.+|...-++++++++...
T Consensus 164 ~~np~~~~~~~~~~id~~~~~fk----q~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~ 239 (752)
T PHA03333 164 AFNPEAPSPRTLREIDRIFDEYG----KCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETV 239 (752)
T ss_pred hcCcCCCChhhHHHHHHHHHHHh----hcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHH
Confidence 33456677888888888887653 245688899999999986544333233 5889999999999999999998877
Q ss_pred hcCC------CCc-EEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhh
Q 003260 355 FSKY------PDI-KVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIAS 427 (835)
Q Consensus 355 f~~~------~gi-~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~ 427 (835)
+... +.. .+....++...-.- ..-...+.|...|.+++.. .+...-.+.++||||||+.+.......+.-
T Consensus 240 le~lg~~~~fp~~~~iv~vkgg~E~I~f-~~p~gak~G~sti~F~Ars--~~s~RG~~~DLLIVDEAAfI~~~~l~aIlP 316 (752)
T PHA03333 240 VHAYQHKPWFPEEFKIVTLKGTDENLEY-ISDPAAKEGKTTAHFLASS--PNAARGQNPDLVIVDEAAFVNPGALLSVLP 316 (752)
T ss_pred HHHhccccccCCCceEEEeeCCeeEEEE-ecCcccccCcceeEEeccc--CCCcCCCCCCEEEEECcccCCHHHHHHHHH
Confidence 6522 111 11112121100000 0000000011223322211 111222356899999999988776665543
Q ss_pred hc--CCceEEEeecCCChhhH
Q 003260 428 FK--ISVDVLTLSATPIPRTL 446 (835)
Q Consensus 428 l~--~~~~vL~lSATp~p~tl 446 (835)
.- .+.+++.+|.+-.....
T Consensus 317 ~l~~~~~k~IiISS~~~~~s~ 337 (752)
T PHA03333 317 LMAVKGTKQIHISSPVDADSW 337 (752)
T ss_pred HHccCCCceEEEeCCCCcchH
Confidence 32 36677777777544443
No 238
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.92 E-value=0.021 Score=69.57 Aligned_cols=88 Identities=20% Similarity=0.207 Sum_probs=62.8
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc----CCCEEEEEcccHHHHHHH
Q 003260 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS----AGKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 272 ~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~----~g~qvlVLvPtr~LA~Q~ 347 (835)
..|...-.+.+++.|.+|+..- ..+++|.|..|||||.+.+.-+...+. .+.++++++.|+..|..+
T Consensus 187 ~~f~~~e~~~L~~~Q~~av~~~---------~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em 257 (684)
T PRK11054 187 DFFSQVESSPLNPSQARAVVNG---------EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEM 257 (684)
T ss_pred HHHHhccCCCCCHHHHHHHhCC---------CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHH
Confidence 3343333468999999996321 245799999999999997665544443 245899999999999999
Q ss_pred HHHHHHhhcCCCCcEEEEecCC
Q 003260 348 FDVVSERFSKYPDIKVGLLSRF 369 (835)
Q Consensus 348 ~~~~~~~f~~~~gi~V~~l~g~ 369 (835)
.+++.+.++. .++.|..+|+.
T Consensus 258 ~eRL~~~lg~-~~v~v~TFHSl 278 (684)
T PRK11054 258 DERIRERLGT-EDITARTFHAL 278 (684)
T ss_pred HHHHHHhcCC-CCcEEEeHHHH
Confidence 9999887652 24566666653
No 239
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.89 E-value=0.041 Score=63.36 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=24.9
Q ss_pred CccEEEEcCccccchhhHHHHhhhcCCceEEEeecCC
Q 003260 405 NLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441 (835)
Q Consensus 405 ~l~llVIDEaHr~g~~~~e~l~~l~~~~~vL~lSATp 441 (835)
.-.+|+|||+|++...+...+...-....++++.+|.
T Consensus 92 ~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att 128 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATT 128 (413)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCC
Confidence 4568999999999766655554443445566666653
No 240
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=95.88 E-value=0.038 Score=67.14 Aligned_cols=87 Identities=22% Similarity=0.315 Sum_probs=76.3
Q ss_pred HHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCc
Q 003260 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNL 406 (835)
Q Consensus 327 ~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l 406 (835)
...++.+++|+++|+..+..+.+.+.+. |+.+.++++..+..++...+..+..|+++|+||| +.|...+.+.++
T Consensus 438 ~~~~g~~vLIf~~tk~~ae~L~~~L~~~-----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-~~L~rGfDiP~v 511 (655)
T TIGR00631 438 RVARNERVLVTTLTKKMAEDLTDYLKEL-----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-NLLREGLDLPEV 511 (655)
T ss_pred HHcCCCEEEEEECCHHHHHHHHHHHhhh-----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-ChhcCCeeeCCC
Confidence 3456889999999999999888877763 6889999999899999999999999999999999 577788899999
Q ss_pred cEEEEcCccccch
Q 003260 407 GLLVVDEEQRFGV 419 (835)
Q Consensus 407 ~llVIDEaHr~g~ 419 (835)
++||+-+++.+|.
T Consensus 512 ~lVvi~DadifG~ 524 (655)
T TIGR00631 512 SLVAILDADKEGF 524 (655)
T ss_pred cEEEEeCcccccC
Confidence 9999988888876
No 241
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.87 E-value=0.11 Score=60.17 Aligned_cols=52 Identities=21% Similarity=0.225 Sum_probs=33.9
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcc--cHHHHHHHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP--TIVLAKQHFDVVSE 353 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvP--tr~LA~Q~~~~~~~ 353 (835)
.|..++++|++|+|||.++...+......|.+|+++.. .+.-+.++...+.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~ 147 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAE 147 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 36678999999999999976655555556777776653 23334343444433
No 242
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.86 E-value=0.13 Score=62.68 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
|..++..+.+.+..+.-+.-+|++|+.|+|||..+...+-..
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 566666555544333334456899999999998876554433
No 243
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.86 E-value=0.059 Score=64.66 Aligned_cols=42 Identities=24% Similarity=0.281 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
|..+...+.+.+..+.-+.-.|++||.|+|||..+...+-..
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 555555555544333334566999999999999876554433
No 244
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.81 E-value=0.046 Score=71.48 Aligned_cols=136 Identities=13% Similarity=0.101 Sum_probs=79.5
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHH--HHHHHHHH--cCCCEEEEEcccHHHHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA--LRAIFCVV--SAGKQAMVLAPTIVLAK 345 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~va--l~a~l~~l--~~g~qvlVLvPtr~LA~ 345 (835)
++..+.......+++.|.+|+..++.. ..+-++|.|..|+|||.+. ++.++..+ ..+..++.++||---+.
T Consensus 824 l~~~~~~~~~~~Lt~~Qr~Av~~iLts-----~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~ 898 (1623)
T PRK14712 824 LMERVPGELMEKLTSGQRAATRMILET-----SDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVG 898 (1623)
T ss_pred hhhhhhhhhhcccCHHHHHHHHHHHhC-----CCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHH
Confidence 333444444458999999999988742 2356899999999999884 33333333 23678999999987776
Q ss_pred HHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHH
Q 003260 346 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKI 425 (835)
Q Consensus 346 Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l 425 (835)
.+. + . |+....++++..... . .. ...........+|||||+=..+..+...+
T Consensus 899 ~L~----e-~----Gi~A~TIasfL~~~~----------~--------~~-~~~~~~~~~~~llIVDEASMV~~~~m~~l 950 (1623)
T PRK14712 899 EMR----S-A----GVDAQTLASFLHDTQ----------L--------QQ-RSGETPDFSNTLFLLDESSMVGNTDMARA 950 (1623)
T ss_pred HHH----H-h----CchHhhHHHHhcccc----------c--------hh-hcccCCCCCCcEEEEEccccccHHHHHHH
Confidence 642 2 1 333333333211000 0 00 00011123458999999999888665554
Q ss_pred hh-hc-CCceEEEee
Q 003260 426 AS-FK-ISVDVLTLS 438 (835)
Q Consensus 426 ~~-l~-~~~~vL~lS 438 (835)
.. .. .+.++|++-
T Consensus 951 l~~~~~~garvVLVG 965 (1623)
T PRK14712 951 YALIAAGGGRAVASG 965 (1623)
T ss_pred HHhhhhCCCEEEEEc
Confidence 33 22 245666543
No 245
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.75 E-value=0.16 Score=62.88 Aligned_cols=41 Identities=24% Similarity=0.238 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~ 326 (835)
|..++..+.+.+..+.-+.-.|++||.|+|||.++...+-.
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 56666555554433222333589999999999987555433
No 246
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.75 E-value=0.042 Score=56.24 Aligned_cols=100 Identities=19% Similarity=0.181 Sum_probs=64.9
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhh
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~ 383 (835)
+-.+++||..||||+-.+..+......|.++++..|.. -.+++ ......+.+.+.
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~i----------D~R~~----~~~V~Sr~G~~~----------- 59 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAI----------DTRYG----VGKVSSRIGLSS----------- 59 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccc----------ccccc----cceeeeccCCcc-----------
Confidence 44689999999999998888888888899999999953 12332 222222222211
Q ss_pred cCCcceeeccHHHhhcccc----cCCccEEEEcCccccchhhHHHHhhhcCC
Q 003260 384 HGHLNIIVGTHSLLGSRVV----YNNLGLLVVDEEQRFGVKQKEKIASFKIS 431 (835)
Q Consensus 384 ~G~~dIIVgT~~~L~~~l~----~~~l~llVIDEaHr~g~~~~e~l~~l~~~ 431 (835)
.-++|-....+.+.+. ..+.++|.|||||-|...+...+..+...
T Consensus 60 ---~A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~~~v~~l~~lad~ 108 (201)
T COG1435 60 ---EAVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQFFDEELVYVLNELADR 108 (201)
T ss_pred ---cceecCChHHHHHHHHhcccCCCcCEEEEehhHhCCHHHHHHHHHHHhh
Confidence 1233334333333221 11278999999999999888888877654
No 247
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.74 E-value=0.073 Score=55.45 Aligned_cols=51 Identities=16% Similarity=0.162 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEE
Q 003260 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 336 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlV 336 (835)
.+..++..+.+-. ....+..+++.|++|+|||..+...+......+..+++
T Consensus 21 ~~~~~~~~l~~~~-~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~ 71 (226)
T TIGR03420 21 GNAELLAALRQLA-AGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIY 71 (226)
T ss_pred CcHHHHHHHHHHH-hcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEE
Confidence 4455666555432 23456789999999999998876555444434444443
No 248
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.73 E-value=0.06 Score=64.70 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
|..++..+.+.+..+.-+...|++||.|+|||..+...+-..
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 666666666555444445679999999999999886655443
No 249
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.71 E-value=0.17 Score=59.82 Aligned_cols=41 Identities=22% Similarity=0.154 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~ 326 (835)
|..+...+.+.+....-+.-.|++||.|+|||.++...+-.
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 55666655554433333344599999999999987554433
No 250
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.71 E-value=0.12 Score=58.24 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~ 329 (835)
|..+...+...+.++.-+.-.|++||.|+|||..+...+-..+.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 67777777766654444557899999999999887665554444
No 251
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.65 E-value=0.071 Score=65.42 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=26.4
Q ss_pred CccEEEEcCccccchhhHHHHhhhcCCceEEEeecCC
Q 003260 405 NLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441 (835)
Q Consensus 405 ~l~llVIDEaHr~g~~~~e~l~~l~~~~~vL~lSATp 441 (835)
+..+|||||+|+|...+...+...-.+..+++.+||.
T Consensus 109 ~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTT 145 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATT 145 (725)
T ss_pred CceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecC
Confidence 4568999999999776555555544556777777774
No 252
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.64 E-value=0.075 Score=63.08 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH
Q 003260 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~ 326 (835)
-|..++..+...+..+.-+...|++||.|+|||..+...+-.
T Consensus 20 Gq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~ 61 (546)
T PRK14957 20 GQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKC 61 (546)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 366666666655533333345789999999999987655543
No 253
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.62 E-value=0.13 Score=58.36 Aligned_cols=120 Identities=17% Similarity=0.130 Sum_probs=66.2
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHH-cCC-CEEEEEcc--cHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVV-SAG-KQAMVLAP--TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEE 377 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l-~~g-~qvlVLvP--tr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~ 377 (835)
.+..++++||||+|||..+...+.... ..| .+|.++.. .+.-+.++...+.+.+ |+.+..+....+...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~----gv~~~~~~~~~~l~~--- 208 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKIL----GVPVHAVKDGGDLQL--- 208 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHc----CCceEecCCcccHHH---
Confidence 467899999999999998765554433 334 45554432 1333444444444433 444443333211110
Q ss_pred HHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccch--hhHHHHhhhc----CCceEEEeecCCChhhHHHH
Q 003260 378 HLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV--KQKEKIASFK----ISVDVLTLSATPIPRTLYLA 449 (835)
Q Consensus 378 ~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~--~~~e~l~~l~----~~~~vL~lSATp~p~tl~~~ 449 (835)
.+ ..+.+.++|+||.+=+... ...+.+..+. +.-.++.+|||.....+...
T Consensus 209 ------------------~l---~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 209 ------------------AL---AELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred ------------------HH---HHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH
Confidence 01 1345678999999865421 1223333331 23347889999877766544
No 254
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.60 E-value=0.076 Score=60.09 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH
Q 003260 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~ 326 (835)
-|..++..+.+.+..+.-+...|++||.|+|||..+...+-.
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 466676666655543333445689999999999887555433
No 255
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.56 E-value=0.022 Score=69.67 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=59.2
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-C---CEEEEEcccHHHHHHHHHHHHHhhc
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-G---KQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-g---~qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
.++|.|.+|+... ...++|.|..|||||.+...-+...+.. + .++++++.|+..|.++.+++...++
T Consensus 2 ~Ln~~Q~~av~~~---------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV---------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC---------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 4789999996432 2468999999999999987666665542 2 4799999999999999999987665
Q ss_pred CC--CCcEEEEecC
Q 003260 357 KY--PDIKVGLLSR 368 (835)
Q Consensus 357 ~~--~gi~V~~l~g 368 (835)
.. .++.|+.+|+
T Consensus 73 ~~~~~~v~i~TfHS 86 (672)
T PRK10919 73 RKEARGLMISTFHT 86 (672)
T ss_pred cccccCcEEEcHHH
Confidence 32 2356665555
No 256
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.55 E-value=0.26 Score=59.15 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~ 326 (835)
|..++..+.+.+..+.-+.-.|++||.|+|||.++...+-.
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~ 58 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARS 58 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 66776666665543333334689999999999998665543
No 257
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.54 E-value=0.22 Score=62.00 Aligned_cols=43 Identities=21% Similarity=0.139 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l 328 (835)
|..++..+.+.+..+.-+.-.|++|+.|+|||.++...+....
T Consensus 20 qe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 20 QEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred cHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6666666655543333334478999999999999866654443
No 258
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.50 E-value=0.13 Score=53.87 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=24.7
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
.+..++++|++|+|||..+-..+......+..++++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3567999999999999776544444434455555443
No 259
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.45 E-value=0.094 Score=62.90 Aligned_cols=43 Identities=19% Similarity=0.208 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l 328 (835)
|..++..+.+.+..+.-+.-.|++|+.|+|||..+...+-...
T Consensus 21 Qe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 21 QEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred cHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5555555555443434445569999999999998766554443
No 260
>PRK08727 hypothetical protein; Validated
Probab=95.45 E-value=0.066 Score=56.74 Aligned_cols=35 Identities=29% Similarity=0.316 Sum_probs=24.8
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
..++++|++|+|||-.+...+......+.+++++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 45899999999999765544444455577777654
No 261
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.45 E-value=0.087 Score=56.70 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=17.8
Q ss_pred CCcEEEEccCCCcccHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~ 324 (835)
..++++.||+|+|||.++-..+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHH
Confidence 4678999999999999874443
No 262
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.43 E-value=0.15 Score=55.76 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=17.0
Q ss_pred CCCcEEEEccCCCcccHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~ 322 (835)
.+..++++||+|+|||..+..
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ 49 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHI 49 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 356799999999999977643
No 263
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.40 E-value=0.038 Score=61.27 Aligned_cols=63 Identities=25% Similarity=0.237 Sum_probs=43.8
Q ss_pred hCCCCC-CHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC---CCEEEEEcccHHHH
Q 003260 277 QFPYEP-TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLA 344 (835)
Q Consensus 277 ~f~~~p-tp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~---g~qvlVLvPtr~LA 344 (835)
.++..| +-.|.-|++.++++ .-.-+.+.|..|+|||+.|+.+.+..+.. -.+++|.=|+..+-
T Consensus 223 vwGi~prn~eQ~~ALdlLld~-----dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG 289 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDD-----DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVG 289 (436)
T ss_pred hhccCcccHHHHHHHHHhcCC-----CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcc
Confidence 344444 45677777777653 23457789999999999999888877644 24777777775443
No 264
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.39 E-value=0.3 Score=59.67 Aligned_cols=42 Identities=21% Similarity=0.189 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH
Q 003260 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~ 326 (835)
.|..++..+.+.+..+.-+.-.|++||.|+|||.+|...+-.
T Consensus 22 GQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~ 63 (725)
T PRK07133 22 GQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANA 63 (725)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 366666666655544333455689999999999987555433
No 265
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.35 E-value=0.14 Score=61.23 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHH
Q 003260 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l 328 (835)
.|..++..+.+.+..+.-+...|++||.|+|||..|...+-...
T Consensus 20 GQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 20 GQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 35666666655543434455689999999999998866654443
No 266
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.34 E-value=0.077 Score=51.37 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=29.3
Q ss_pred EEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHH
Q 003260 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLA 344 (835)
Q Consensus 306 ~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA 344 (835)
++|+|++|+|||..+...+......+..++++.....+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 589999999999987666666555677888876654443
No 267
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.32 E-value=0.18 Score=50.39 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~ 329 (835)
|.+++..+.+......-+...|++||.|+||+..+...+...+.
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~ 45 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLC 45 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 66777777665544455667899999999999887666655443
No 268
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.31 E-value=0.32 Score=55.17 Aligned_cols=124 Identities=18% Similarity=0.182 Sum_probs=69.9
Q ss_pred CCcEEEEccCCCcccHHHH-HHHHHH-HcCCCEEEEEc--ccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVAL-RAIFCV-VSAGKQAMVLA--PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val-~a~l~~-l~~g~qvlVLv--Ptr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~ 378 (835)
++-+.++||||.|||.... +++... ....++|.++. ..|.=|..+.....+.+ |+.+.++... .+-...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im----~vp~~vv~~~---~el~~a 275 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIM----GVPLEVVYSP---KELAEA 275 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHh----CCceEEecCH---HHHHHH
Confidence 6778999999999998843 333333 24445555544 23555555555555433 4555554432 121111
Q ss_pred HHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccc--hhhHHHHhhh---c-CCceEEEeecCCChhhHHHHHhc
Q 003260 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFG--VKQKEKIASF---K-ISVDVLTLSATPIPRTLYLALTG 452 (835)
Q Consensus 379 l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g--~~~~e~l~~l---~-~~~~vL~lSATp~p~tl~~~~~g 452 (835)
+ ..+.++++|.||=+=+-- ....+.++.+ . +.--.|.+|||...+.+......
T Consensus 276 i---------------------~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~ 334 (407)
T COG1419 276 I---------------------EALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQ 334 (407)
T ss_pred H---------------------HHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHH
Confidence 1 235677889999876632 1223333333 2 22346789999877777665554
Q ss_pred CC
Q 003260 453 FR 454 (835)
Q Consensus 453 ~~ 454 (835)
++
T Consensus 335 f~ 336 (407)
T COG1419 335 FS 336 (407)
T ss_pred hc
Confidence 43
No 269
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.30 E-value=0.054 Score=54.50 Aligned_cols=47 Identities=19% Similarity=0.359 Sum_probs=36.6
Q ss_pred EEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHH
Q 003260 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 306 ~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
++|.|++|+|||..++..+...+..|..|+++... +-..++.+.+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~~~ 48 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAES 48 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHHHH
Confidence 68999999999999988888777888888888653 445566665554
No 270
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.29 E-value=0.11 Score=63.13 Aligned_cols=135 Identities=19% Similarity=0.234 Sum_probs=86.4
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHHc---------CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecC-CCCHH
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVVS---------AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR-FQSKA 373 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l~---------~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g-~~s~~ 373 (835)
.-.|+.-+.|-|||...+..++..-. .++..++++|+ .+..||..++ +....-..+.+.+++| .....
T Consensus 153 ~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~el-ek~~~~~~l~v~v~~gr~kd~~ 230 (674)
T KOG1001|consen 153 RGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTEL-EKVTEEDKLSIYVYHGRTKDKS 230 (674)
T ss_pred ccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHH-hccCCccceEEEEecccccccc
Confidence 45689999999999997666554311 23567888886 5677888888 4454444577888887 22222
Q ss_pred HHHHHHHhhhcCCcceeeccHHHhhc-ccccCCccEEEEcCccccchhhHHHHhhh--cCCceEEEeecCCChhhHHHH
Q 003260 374 EKEEHLDMIKHGHLNIIVGTHSLLGS-RVVYNNLGLLVVDEEQRFGVKQKEKIASF--KISVDVLTLSATPIPRTLYLA 449 (835)
Q Consensus 374 e~~~~l~~l~~G~~dIIVgT~~~L~~-~l~~~~l~llVIDEaHr~g~~~~e~l~~l--~~~~~vL~lSATp~p~tl~~~ 449 (835)
+ ...+|||++|+..+.. .+.--.+-.||+||+|..........+.. -.....-.+|+||+...+...
T Consensus 231 e---------l~~~dVVltTy~il~~~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~l 300 (674)
T KOG1001|consen 231 E---------LNSYDVVLTTYDILKNSPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDEL 300 (674)
T ss_pred h---------hcCCceEEeeHHHhhcccccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHH
Confidence 2 1348899999999973 22223445699999998754332222111 123445678999987665433
No 271
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.28 E-value=0.11 Score=69.02 Aligned_cols=133 Identities=15% Similarity=0.128 Sum_probs=78.8
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHH--HHHHHHHH--cCCCEEEEEcccHHHHHHHH
Q 003260 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA--LRAIFCVV--SAGKQAMVLAPTIVLAKQHF 348 (835)
Q Consensus 273 ~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~va--l~a~l~~l--~~g~qvlVLvPtr~LA~Q~~ 348 (835)
.+.....+.+++.|+.|+..++.. ..+-++|.|..|+|||.+. +..++..+ ..+..|+.++||---|.++
T Consensus 959 ~~~~~~~~~Lt~~Q~~Av~~il~s-----~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L- 1032 (1747)
T PRK13709 959 RVPGELMEGLTSGQRAATRMILES-----TDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEM- 1032 (1747)
T ss_pred hHHHHhcCCCCHHHHHHHHHHHhC-----CCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHH-
Confidence 344445568999999999998752 2356899999999999873 33333332 2356799999998777653
Q ss_pred HHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhhh
Q 003260 349 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF 428 (835)
Q Consensus 349 ~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l 428 (835)
.+ . |+....++++....+. ...++ .......++|||||+=.++......+...
T Consensus 1033 ---~e-~----Gi~A~TI~s~L~~~~~-----~~~~~--------------~~~~~~~~llIVDEaSMv~~~~m~~Ll~~ 1085 (1747)
T PRK13709 1033 ---RS-A----GVDAQTLASFLHDTQL-----QQRSG--------------ETPDFSNTLFLLDESSMVGNTDMARAYAL 1085 (1747)
T ss_pred ---Hh-c----CcchhhHHHHhccccc-----ccccc--------------cCCCCCCcEEEEEccccccHHHHHHHHHh
Confidence 22 1 4443333332211000 00000 01112348999999999887666554433
Q ss_pred -c-CCceEEEee
Q 003260 429 -K-ISVDVLTLS 438 (835)
Q Consensus 429 -~-~~~~vL~lS 438 (835)
. .+.++|++-
T Consensus 1086 ~~~~garvVLVG 1097 (1747)
T PRK13709 1086 IAAGGGRAVSSG 1097 (1747)
T ss_pred hhcCCCEEEEec
Confidence 2 246666543
No 272
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.27 E-value=0.15 Score=60.56 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~ 326 (835)
|..++..+.+.+....-+.-.|++||.|+|||.++...+..
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKS 61 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 55555555544433333344689999999999887555433
No 273
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.19 E-value=0.14 Score=61.23 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~ 326 (835)
|...+..+.+.+....-++-.|++||.|+|||.++-..+-.
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAka 61 (559)
T PRK05563 21 QEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKA 61 (559)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 55555555554433334555788999999999987555433
No 274
>PTZ00293 thymidine kinase; Provisional
Probab=95.19 E-value=0.077 Score=55.34 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=33.4
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 341 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr 341 (835)
|+=.+++||++||||.-.+..+......+.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 445689999999999988888888878899999999964
No 275
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.14 E-value=0.19 Score=68.21 Aligned_cols=123 Identities=17% Similarity=0.123 Sum_probs=74.5
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHH---HHHHHHHc-CCCEEEEEcccHHHHHHHHHHHHHh
Q 003260 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL---RAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSER 354 (835)
Q Consensus 279 ~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val---~a~l~~l~-~g~qvlVLvPtr~LA~Q~~~~~~~~ 354 (835)
.+.+++.|+.|+..++.. ..+-++|.|..|+|||.+.- .++...+. .+.+|+.++||-.-|.++. +.
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~-----~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~----~~ 1087 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIIST-----KDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELK----SA 1087 (1960)
T ss_pred cCCCCHHHHHHHHHHHhC-----CCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHH----hc
Confidence 457999999999988741 23457889999999998752 33334333 4778999999987776542 21
Q ss_pred hcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhhh--cCCc
Q 003260 355 FSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF--KISV 432 (835)
Q Consensus 355 f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l--~~~~ 432 (835)
|+....+.++.. . ... ......+....++||||+=..+..+...+... ..+.
T Consensus 1088 -----g~~a~Ti~s~l~-------------~-~~~-------~~~~~~~~~~~v~ivDEasMv~~~~~~~l~~~~~~~~a 1141 (1960)
T TIGR02760 1088 -----GVQAQTLDSFLT-------------D-ISL-------YRNSGGDFRNTLFILDESSMVSNFQLTHATELVQKSGS 1141 (1960)
T ss_pred -----CCchHhHHHHhc-------------C-ccc-------ccccCCCCcccEEEEEccccccHHHHHHHHHhccCCCC
Confidence 333322222211 0 000 00001133567999999999888776665443 2345
Q ss_pred eEEE
Q 003260 433 DVLT 436 (835)
Q Consensus 433 ~vL~ 436 (835)
++|+
T Consensus 1142 k~vl 1145 (1960)
T TIGR02760 1142 RAVS 1145 (1960)
T ss_pred EEEE
Confidence 5554
No 276
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.14 E-value=0.082 Score=62.98 Aligned_cols=101 Identities=23% Similarity=0.402 Sum_probs=83.1
Q ss_pred HHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC--CCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCc-CCcCCC
Q 003260 483 SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-VESGLD 559 (835)
Q Consensus 483 ~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p--~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~i-ie~GID 559 (835)
-++...+..|.|+.+..||.--++.-++.+.+.++ +++|..+.|.+....|++++....+|+++|+|+|-. +...++
T Consensus 302 laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~ 381 (677)
T COG1200 302 LAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVE 381 (677)
T ss_pred HHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhccee
Confidence 34455678899999999996555554555554443 789999999999999999999999999999999985 688999
Q ss_pred CCCccEEEEecCCCCChhHHHHHh
Q 003260 560 IQNANTIIVQDVQQFGLAQLYQLR 583 (835)
Q Consensus 560 Ip~v~~VIi~d~p~~sl~~l~Qr~ 583 (835)
+.++-.||+..-.+||..|=.+.+
T Consensus 382 F~~LgLVIiDEQHRFGV~QR~~L~ 405 (677)
T COG1200 382 FHNLGLVIIDEQHRFGVHQRLALR 405 (677)
T ss_pred ecceeEEEEeccccccHHHHHHHH
Confidence 999999999999999987755544
No 277
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.13 E-value=0.16 Score=49.74 Aligned_cols=49 Identities=16% Similarity=0.335 Sum_probs=37.6
Q ss_pred EeCCCCHHHHHHHHHHhhcCC-eeEEEEcCcCCcCCCCCC--ccEEEEecCC
Q 003260 524 AHGQQYSRQLEETMEKFAQGA-IKILICTNIVESGLDIQN--ANTIIVQDVQ 572 (835)
Q Consensus 524 lhg~m~~~ere~vl~~F~~g~-~~ILVaT~iie~GIDIp~--v~~VIi~d~p 572 (835)
+.-+.+..+...+++.|.+.. ..||++|.-+.+|||+|+ ++.||+...|
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 333345556789999998754 379999988999999997 5688887766
No 278
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.5 Score=55.64 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHH
Q 003260 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l 325 (835)
-|..++..+.+.+..+.-+.-.|++||.|+|||.++...+-
T Consensus 20 Gq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 20 GQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 46777776666554333333457899999999988755443
No 279
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.12 E-value=0.26 Score=56.06 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=28.5
Q ss_pred CHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHH
Q 003260 283 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 283 tp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
+..|.+.+...+.+...+..+.+++|+|++|+|||.+.-..+
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~ 76 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVF 76 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 355556666665443334556789999999999998754443
No 280
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.11 E-value=0.17 Score=60.93 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHH
Q 003260 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l 325 (835)
.|..++..+...+..+.-+...|++||.|+|||.++...+-
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~ 60 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAK 60 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 36666666665554333345569999999999998765543
No 281
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=95.11 E-value=0.085 Score=53.60 Aligned_cols=36 Identities=33% Similarity=0.474 Sum_probs=30.4
Q ss_pred EEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccH
Q 003260 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 341 (835)
Q Consensus 306 ~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr 341 (835)
.++.||.+||||.-.+..+...-..+++++++-|..
T Consensus 4 ~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~ 39 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAI 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEEST
T ss_pred EEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 478999999999998888877777899999999964
No 282
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.08 E-value=0.2 Score=61.69 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=29.4
Q ss_pred CHhHHHHHHHHHHhhhcCCCCCcE-EEEccCCCcccHHHHHH
Q 003260 283 TPDQKKAFLDVERDLTERETPMDR-LICGDVGFGKTEVALRA 323 (835)
Q Consensus 283 tp~Q~~AI~~il~dl~~~~~~~d~-Ll~a~TGsGKT~val~a 323 (835)
+..|.+.|..++.....+..+.++ +|.|+||+|||.+.-..
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~V 801 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSV 801 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHH
Confidence 677888887777765444445555 59999999999986443
No 283
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.07 E-value=0.17 Score=53.82 Aligned_cols=86 Identities=21% Similarity=0.327 Sum_probs=45.4
Q ss_pred HHHHHHHHHHccCCCCCCCChHHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHH
Q 003260 249 DLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 249 ~l~~l~~~r~~~~~~~~~~~~l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l 328 (835)
++++.|..-..-.+.+|.++. ...+.|...++ .+++-.+..+... ...-..++|++|||||.+.= ++....
T Consensus 5 ~~~e~~l~~~g~~~~pf~~~~-----~~~~~~~~a~h-~e~l~~l~~~i~d--~qg~~~vtGevGsGKTv~~R-al~~s~ 75 (269)
T COG3267 5 HLLEMLLNHFGFSRLPFSWDI-----QPGLDYWAADH-NEALLMLHAAIAD--GQGILAVTGEVGSGKTVLRR-ALLASL 75 (269)
T ss_pred HHHHHHHHHhhhccCCCccch-----hhhhhhhhhhh-hHHHHHHHHHHhc--CCceEEEEecCCCchhHHHH-HHHHhc
Confidence 344455544444455565433 12223334444 3455556555432 23367899999999998754 555544
Q ss_pred cCCCEEEEEcccHHH
Q 003260 329 SAGKQAMVLAPTIVL 343 (835)
Q Consensus 329 ~~g~qvlVLvPtr~L 343 (835)
..+..++++.|-..+
T Consensus 76 ~~d~~~~v~i~~~~~ 90 (269)
T COG3267 76 NEDQVAVVVIDKPTL 90 (269)
T ss_pred CCCceEEEEecCcch
Confidence 444444444444333
No 284
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.06 E-value=0.66 Score=53.34 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=65.6
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHH-HcCCCEEEEEc--ccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLA--PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~-l~~g~qvlVLv--Ptr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l 379 (835)
+.-++++||+|+|||.++...+... ...|.+|.++. +.+..+..+..+..+.+ ++.+.... ..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~l----gvp~~~~~------~~---- 288 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTM----GMPFYPVK------DI---- 288 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhc----CCCeeehH------HH----
Confidence 3457889999999999986665443 45566666554 44566655555544322 33221110 00
Q ss_pred HhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccc--hhhHHHHhhhc-------CCceEEEeecCCChhhHHHHH
Q 003260 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFG--VKQKEKIASFK-------ISVDVLTLSATPIPRTLYLAL 450 (835)
Q Consensus 380 ~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g--~~~~e~l~~l~-------~~~~vL~lSATp~p~tl~~~~ 450 (835)
..+...+.-.++++||||=+-+.. ..+.+.+..+. +.-.++.+|||..........
T Consensus 289 ---------------~~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~ 353 (432)
T PRK12724 289 ---------------KKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL 353 (432)
T ss_pred ---------------HHHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH
Confidence 011111112466788888655431 22333332221 224578899998876665554
Q ss_pred hcC
Q 003260 451 TGF 453 (835)
Q Consensus 451 ~g~ 453 (835)
..+
T Consensus 354 ~~f 356 (432)
T PRK12724 354 KAY 356 (432)
T ss_pred HHh
Confidence 443
No 285
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.03 E-value=0.14 Score=58.62 Aligned_cols=43 Identities=21% Similarity=0.160 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHH
Q 003260 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
.|..+...+.+.+..+.-+...|++||.|+|||.++...+-..
T Consensus 20 Gq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 20 AQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred ChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 3666666665555333334558899999999999986655443
No 286
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.03 E-value=0.41 Score=57.80 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
|..++..+.+.+..+.-+.-.|++|+.|+|||..+...+-..
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 666666666655443334556999999999999876655443
No 287
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.00 E-value=0.15 Score=59.49 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=25.9
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHHcC--CCEEEEEcccHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQ 346 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l~~--g~qvlVLvPtr~LA~Q 346 (835)
..++++||+|+|||-.+-..+-..... +..++++ +...+..+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi-~~~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV-TSEKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE-EHHHHHHH
Confidence 458999999999997754443333333 4556655 43444443
No 288
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.99 E-value=0.015 Score=58.96 Aligned_cols=122 Identities=17% Similarity=0.194 Sum_probs=54.8
Q ss_pred EEEccCCCcccHHHHHHHHHHHcCC-CEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcC
Q 003260 307 LICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385 (835)
Q Consensus 307 Ll~a~TGsGKT~val~a~l~~l~~g-~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G 385 (835)
+|.|+-|-|||.+.-+++...+..+ ..++|.+|+.+-++..++.+...+... +.+. ...........+...
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~-------~~~~~~~~~~~~~~~ 72 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKAL-GYKE-------EKKKRIGQIIKLRFN 72 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC----------------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcccc-cccc-------ccccccccccccccc
Confidence 5789999999987655544444444 479999999988777666554433222 1221 000001111122223
Q ss_pred CcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhhhcCCceEEEeecCC
Q 003260 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441 (835)
Q Consensus 386 ~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l~~~~~vL~lSATp 441 (835)
...|-+-.|..+.... ...++||||||=.+.......+. .....++||.|.
T Consensus 73 ~~~i~f~~Pd~l~~~~--~~~DlliVDEAAaIp~p~L~~ll---~~~~~vv~stTi 123 (177)
T PF05127_consen 73 KQRIEFVAPDELLAEK--PQADLLIVDEAAAIPLPLLKQLL---RRFPRVVFSTTI 123 (177)
T ss_dssp CCC--B--HHHHCCT------SCEEECTGGGS-HHHHHHHH---CCSSEEEEEEEB
T ss_pred cceEEEECCHHHHhCc--CCCCEEEEechhcCCHHHHHHHH---hhCCEEEEEeec
Confidence 4567777787775322 24689999999988876665553 233455677775
No 289
>PRK06893 DNA replication initiation factor; Validated
Probab=94.98 E-value=0.085 Score=55.73 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=23.9
Q ss_pred cEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 305 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
.++++||+|+|||-.+...+-....++..+.++.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 3689999999999776555545555566665544
No 290
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.96 E-value=0.27 Score=54.72 Aligned_cols=128 Identities=22% Similarity=0.217 Sum_probs=66.3
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc-c-cHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA-P-TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv-P-tr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l 379 (835)
.+.-++++||+|+|||..+...+......+++|+++. . .+..+.++...+..+. ++.+.......++.. ...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~----~i~~~~~~~~~dpa~--~v~ 186 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERV----GVPVIAQKEGADPAS--VAF 186 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHc----CceEEEeCCCCCHHH--HHH
Confidence 3566788999999999887555444445677777764 3 3444444444444432 333332222111110 001
Q ss_pred HhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhh--HHHHhhh----------cCCceEEEeecCCChhhHH
Q 003260 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQ--KEKIASF----------KISVDVLTLSATPIPRTLY 447 (835)
Q Consensus 380 ~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~--~e~l~~l----------~~~~~vL~lSATp~p~tl~ 447 (835)
+ .+. .....++++||||=+-+..... .+.+..+ .+.-.++.++||.....+.
T Consensus 187 ~---------------~l~-~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~ 250 (318)
T PRK10416 187 D---------------AIQ-AAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS 250 (318)
T ss_pred H---------------HHH-HHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH
Confidence 1 010 0123567888888887653211 1222211 2334578899997665555
Q ss_pred HHHh
Q 003260 448 LALT 451 (835)
Q Consensus 448 ~~~~ 451 (835)
.+..
T Consensus 251 ~a~~ 254 (318)
T PRK10416 251 QAKA 254 (318)
T ss_pred HHHH
Confidence 4433
No 291
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.91 E-value=0.5 Score=52.83 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHH
Q 003260 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l 325 (835)
.|..++..+.+.+..+..++..|++||.|+|||..+...+-
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 18 GQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35666666665554444455679999999999987654443
No 292
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.91 E-value=0.2 Score=60.29 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~ 326 (835)
|..++..+.+.+..+.-++-.|++||.|+|||.++...+-.
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~ 61 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKA 61 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 55555555554433333455689999999999987655443
No 293
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.90 E-value=0.045 Score=66.80 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=59.9
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC----CCEEEEEcccHHHHHHHHHHHHHhhc
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~----g~qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
.++|.|.+|+... ..+++|.|..|||||.+.+.-+...+.. ...+++++.|+..|.++.+++.+.++
T Consensus 1 ~Ln~~Q~~av~~~---------~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 1 KLNPQQQEAVEYV---------TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCCHHHHHHHhCC---------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 3789999986431 3578999999999999987777666642 25789999999999999999988665
Q ss_pred CC--CCcEEEEecCC
Q 003260 357 KY--PDIKVGLLSRF 369 (835)
Q Consensus 357 ~~--~gi~V~~l~g~ 369 (835)
.. .++.|..+|++
T Consensus 72 ~~~~~~v~v~TfHs~ 86 (664)
T TIGR01074 72 KGEARGLTISTFHTL 86 (664)
T ss_pred ccccCCeEEEeHHHH
Confidence 32 24566665553
No 294
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.88 E-value=0.16 Score=61.26 Aligned_cols=43 Identities=21% Similarity=0.168 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHH
Q 003260 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
-|..++..+.+.+..+.-+...|++||.|+|||.+|...+-..
T Consensus 20 GQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 20 AQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 3677777666655443344558899999999999986655443
No 295
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.85 E-value=0.19 Score=54.03 Aligned_cols=70 Identities=20% Similarity=0.152 Sum_probs=46.5
Q ss_pred CCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHH
Q 003260 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 282 ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~ 352 (835)
....+..++..+..-...-+.+.++++.|++|+|||-.+...+...+..|..|+ .+++.+|+.++...+.
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~-f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 84 QPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVL-FITAPDLLSKLKAAFD 153 (254)
T ss_pred CcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEE-EEEHHHHHHHHHHHHh
Confidence 344566665555432222346789999999999999988776666664455554 5677778877555443
No 296
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.84 E-value=0.15 Score=49.97 Aligned_cols=66 Identities=20% Similarity=0.394 Sum_probs=42.7
Q ss_pred hHHHHHHHHhhCC---CCeEEEEeCCCCHHHHHHHHHHhhcCCe---eEEEEcCc--CCcCCCCCC--ccEEEEecCC
Q 003260 505 LEEPMDFLQQAFP---GVDIAIAHGQQYSRQLEETMEKFAQGAI---KILICTNI--VESGLDIQN--ANTIIVQDVQ 572 (835)
Q Consensus 505 ~e~l~~~L~~~~p---~~~v~~lhg~m~~~ere~vl~~F~~g~~---~ILVaT~i--ie~GIDIp~--v~~VIi~d~p 572 (835)
.+.+++.+.+... +.. .+.-+. ...+...+++.|.+..- .||+|+.- +.+|||+|+ ++.||+.+.|
T Consensus 4 m~~v~~~~~~~~~~~~~~~-i~~e~~-~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 4 LEQVVEYWKENGILEINKP-VFIEGK-DSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred HHHHHHHHHhcCccccCce-EEEECC-CCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 3455666655422 122 233333 23345788899987543 68888876 999999997 6788888776
No 297
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.77 E-value=0.17 Score=58.07 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=30.5
Q ss_pred CHhHHHHHHHHHHhhhcCC--CCCcEEEEccCCCcccHHHHHHHHHHHcC--CCEEEEEc
Q 003260 283 TPDQKKAFLDVERDLTERE--TPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLA 338 (835)
Q Consensus 283 tp~Q~~AI~~il~dl~~~~--~~~d~Ll~a~TGsGKT~val~a~l~~l~~--g~qvlVLv 338 (835)
.+....|...+.+-. +.+ ....++++|++|+|||-.+...+-..... +..++++.
T Consensus 115 g~~n~~a~~~~~~~~-~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 115 GKSNRLAHAAALAVA-ENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCcHHHHHHHHHHHH-hCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 344554554444322 221 23457899999999998764333333322 45666663
No 298
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.74 E-value=0.67 Score=51.26 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
|..++..+.+-+ ..+....++++||+|+|||..+...+-..
T Consensus 20 ~~~~~~~L~~~~-~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 20 QDEVVERLSRAV-DSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred CHHHHHHHHHHH-hCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344444444333 22332369999999999998875554433
No 299
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.74 E-value=0.27 Score=54.72 Aligned_cols=50 Identities=30% Similarity=0.380 Sum_probs=38.5
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~ 330 (835)
.+.|+|..++..+.+.+..+.-+.-.|+.||.|.||+..+...+-..+..
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~ 53 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLAS 53 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCC
Confidence 56799999999998876554455668999999999999876665554443
No 300
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.73 E-value=0.056 Score=66.67 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=59.4
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC----CCEEEEEcccHHHHHHHHHHHHHhhc
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~----g~qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
.++|.|.+|+... ...++|.|..|||||.+...-+...+.. ..++++|+-|+..|.++.+++.+.++
T Consensus 9 ~Ln~~Q~~av~~~---------~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAAP---------LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhCC---------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 5899999996421 2468999999999999977666555542 35799999999999999999988665
Q ss_pred CC-CCcEEEEecC
Q 003260 357 KY-PDIKVGLLSR 368 (835)
Q Consensus 357 ~~-~gi~V~~l~g 368 (835)
.. .++.|+.+|+
T Consensus 80 ~~~~~~~i~TfHs 92 (721)
T PRK11773 80 TSQGGMWVGTFHG 92 (721)
T ss_pred cCCCCCEEEcHHH
Confidence 32 2455665554
No 301
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.72 E-value=0.28 Score=54.80 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=33.7
Q ss_pred CCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc
Q 003260 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329 (835)
Q Consensus 282 ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~ 329 (835)
..|+|...+..+.+ .+.-+.-.|++||.|.|||..+...+-..+.
T Consensus 4 ~yPWl~~~~~~~~~---~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 4 IYPWQQSLWQQLAG---RGRHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred CCCCcHHHHHHHHH---CCCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 46889999988876 2334566889999999999887665554443
No 302
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.72 E-value=0.05 Score=67.07 Aligned_cols=79 Identities=19% Similarity=0.181 Sum_probs=59.2
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC----CCEEEEEcccHHHHHHHHHHHHHhhc
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~----g~qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
.++|.|.+|+... ...++|.|..|||||.+...-+...+.. ..++++++.|+..|..+.+++.+.++
T Consensus 4 ~Ln~~Q~~av~~~---------~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 4 GLNDKQREAVAAP---------PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred ccCHHHHHHHcCC---------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 5899999996421 2468999999999999976666655542 25899999999999999999988665
Q ss_pred CC-CCcEEEEecC
Q 003260 357 KY-PDIKVGLLSR 368 (835)
Q Consensus 357 ~~-~gi~V~~l~g 368 (835)
.- .++.|+.+|+
T Consensus 75 ~~~~~~~i~TfHs 87 (715)
T TIGR01075 75 TSARGMWIGTFHG 87 (715)
T ss_pred ccccCcEEEcHHH
Confidence 32 2455655554
No 303
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.67 E-value=0.24 Score=55.60 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=28.1
Q ss_pred CHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHH
Q 003260 283 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 283 tp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val 321 (835)
+..|.+.+...+.....+..+.+++|+||+|+|||.++-
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 456666666666554344556789999999999998753
No 304
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.62 E-value=0.12 Score=57.32 Aligned_cols=105 Identities=17% Similarity=0.194 Sum_probs=60.3
Q ss_pred CCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHH
Q 003260 300 RETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379 (835)
Q Consensus 300 ~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l 379 (835)
.++--.+|+.||.|+|||..+=+.+-..-....+.+=+.-|.+-++....-|.+
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~-------------------------- 212 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQ-------------------------- 212 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHH--------------------------
Confidence 344456899999999999887444433222223334444444333332222221
Q ss_pred HhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhhhcCCceEEEeecCCChhhH
Q 003260 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTL 446 (835)
Q Consensus 380 ~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l~~~~~vL~lSATp~p~tl 446 (835)
.++. ....+.-.++.|||+|||.-.|...+.-.-.+..+++.-||-...++
T Consensus 213 --aq~~--------------~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSF 263 (554)
T KOG2028|consen 213 --AQNE--------------KSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSF 263 (554)
T ss_pred --HHHH--------------HhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCcc
Confidence 0000 01123445789999999987766666555567788889999643333
No 305
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=94.61 E-value=0.15 Score=56.02 Aligned_cols=89 Identities=16% Similarity=0.374 Sum_probs=71.3
Q ss_pred HHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccc
Q 003260 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV 402 (835)
Q Consensus 323 a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~ 402 (835)
.+-+....|..+++.+|+.+..+|.+..+++.+ |..+++.+++. ...+.+..+.+++|+.+|+|+| ..|.+.+.
T Consensus 297 ~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~---~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTT-TILERGVT 370 (441)
T COG4098 297 WLEKQRKTGRPVLIFFPEIETMEQVAAALKKKL---PKETIASVHSE--DQHRKEKVEAFRDGKITLLITT-TILERGVT 370 (441)
T ss_pred HHHHHHhcCCcEEEEecchHHHHHHHHHHHhhC---Cccceeeeecc--CccHHHHHHHHHcCceEEEEEe-ehhhcccc
Confidence 334445568899999999999999999887654 44677777773 3456677888999999999998 46667889
Q ss_pred cCCccEEEEcCcccc
Q 003260 403 YNNLGLLVVDEEQRF 417 (835)
Q Consensus 403 ~~~l~llVIDEaHr~ 417 (835)
|.++++.|++-.|+.
T Consensus 371 fp~vdV~Vlgaeh~v 385 (441)
T COG4098 371 FPNVDVFVLGAEHRV 385 (441)
T ss_pred cccceEEEecCCccc
Confidence 999999999999975
No 306
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.60 E-value=0.55 Score=54.19 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=34.5
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc--ccHHHHHHHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA--PTIVLAKQHFDVVSE 353 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv--Ptr~LA~Q~~~~~~~ 353 (835)
+.-++++|++|+|||..+...+......|.+|+++. |.|.-|.++...+.+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~ 152 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNAT 152 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhh
Confidence 456789999999999887655544445677777665 345556655555544
No 307
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.60 E-value=0.79 Score=52.03 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=27.7
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
.+..++++||+|+|||..+...+......+.+|.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3567789999999999887666555556677776654
No 308
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.56 E-value=0.51 Score=53.49 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc
Q 003260 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~ 329 (835)
-|..+...+.+.+..+.-+.-.|++||.|+||+..+...+-..+.
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhC
Confidence 477787777776655444566899999999999988766655554
No 309
>PHA02533 17 large terminase protein; Provisional
Probab=94.55 E-value=0.33 Score=57.73 Aligned_cols=75 Identities=17% Similarity=0.123 Sum_probs=55.2
Q ss_pred CCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHH-HHHHH-HcCCCEEEEEcccHHHHHHHHHHHHHhh
Q 003260 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR-AIFCV-VSAGKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 278 f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~-a~l~~-l~~g~qvlVLvPtr~LA~Q~~~~~~~~f 355 (835)
-|+.|.|.|...+..+.. .+-.++.-+=..|||.++.. ++..+ ...+.++++++|+..-|..+++.++..+
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~-------~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHK-------NRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred eecCCcHHHHHHHHHHhc-------CeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 368899999998776531 23346778889999998653 33333 3556799999999999999999888766
Q ss_pred cCCC
Q 003260 356 SKYP 359 (835)
Q Consensus 356 ~~~~ 359 (835)
...|
T Consensus 129 e~~P 132 (534)
T PHA02533 129 ELLP 132 (534)
T ss_pred HhCH
Confidence 5544
No 310
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=94.50 E-value=0.2 Score=61.12 Aligned_cols=86 Identities=23% Similarity=0.353 Sum_probs=73.7
Q ss_pred HcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCcc
Q 003260 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 407 (835)
Q Consensus 328 l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ 407 (835)
...+.+++|+++|+.-+..+.+.+.+ . |+++.++++..+..++...+..+..|.++|+||| +.+...+.+.+++
T Consensus 443 ~~~g~~viIf~~t~~~ae~L~~~L~~----~-gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t-~~L~rGfdlp~v~ 516 (652)
T PRK05298 443 VAKGERVLVTTLTKRMAEDLTDYLKE----L-GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-NLLREGLDIPEVS 516 (652)
T ss_pred HhCCCEEEEEeCCHHHHHHHHHHHhh----c-ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEe-CHHhCCccccCCc
Confidence 45688999999999888887776665 2 7899999999899999999999999999999998 5677788899999
Q ss_pred EEEEcCccccch
Q 003260 408 LLVVDEEQRFGV 419 (835)
Q Consensus 408 llVIDEaHr~g~ 419 (835)
++|+=|++.||+
T Consensus 517 lVii~d~eifG~ 528 (652)
T PRK05298 517 LVAILDADKEGF 528 (652)
T ss_pred EEEEeCCccccc
Confidence 999888888776
No 311
>PLN03025 replication factor C subunit; Provisional
Probab=94.48 E-value=0.27 Score=54.49 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=19.8
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
.+..+++++||+|+|||..+...+-..
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 334468999999999998875554443
No 312
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.48 E-value=0.2 Score=54.50 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=25.7
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC
Q 003260 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330 (835)
Q Consensus 289 AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~ 330 (835)
.+|.+..++.+.+++ -+||.||||||||.. +.++...+..
T Consensus 112 glP~i~~~~~~~~~G-LILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 112 GLPPIVRELAESPRG-LILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred CCCHHHHHHHhCCCc-eEEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 345555556555554 488999999999876 3344455544
No 313
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.47 E-value=0.65 Score=54.81 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=60.5
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcC--CCEEEEEc--ccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLA--PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEE 377 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~--g~qvlVLv--Ptr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~ 377 (835)
.+..+.++|++|+|||..+...+...... +.+|.++. +.+..+.++..... ...++.+..... ..+-.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya----~iLgv~v~~a~d---~~~L~- 420 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYG----RQLGIAVHEADS---AESLL- 420 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhh----cccCceeEecCc---HHHHH-
Confidence 35678899999999998865444333332 34555543 23444433322222 222333332211 11100
Q ss_pred HHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchh-----hHHHHhhhcCCceEEEeecCCChhhHH
Q 003260 378 HLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVK-----QKEKIASFKISVDVLTLSATPIPRTLY 447 (835)
Q Consensus 378 ~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~-----~~e~l~~l~~~~~vL~lSATp~p~tl~ 447 (835)
..|. .+.++++||||.+=+.... +...+........++++++++....+.
T Consensus 421 -----------------~aL~---~l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 421 -----------------DLLE---RLRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD 475 (559)
T ss_pred -----------------HHHH---HhccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH
Confidence 0111 2356889999998764221 112233333456688889988655544
No 314
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.43 E-value=0.32 Score=58.23 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~ 326 (835)
|..++..+.+.+..+.-+.-.|++||.|+|||.++...+-.
T Consensus 21 qe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 21 QDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 66666666665544444555899999999999987655443
No 315
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.41 E-value=0.43 Score=53.19 Aligned_cols=48 Identities=10% Similarity=0.141 Sum_probs=36.4
Q ss_pred CCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc
Q 003260 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329 (835)
Q Consensus 282 ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~ 329 (835)
..|+|..++..+.+.+..+.-+.-.|++||.|.||+..+...+-..+.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC 50 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC 50 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC
Confidence 368888888888877655445667889999999999987666555444
No 316
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.41 E-value=1.5 Score=48.54 Aligned_cols=130 Identities=23% Similarity=0.212 Sum_probs=78.5
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcc--cHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP--TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvP--tr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~ 378 (835)
.+|.-++++|..|+|||...--.+.....+|++|++.+- -|+-|.++.+.+.++. |+.+.....+.++.. -.
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~----gv~vI~~~~G~DpAa--Va 210 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERL----GVPVISGKEGADPAA--VA 210 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHh----CCeEEccCCCCCcHH--HH
Confidence 447778999999999999976666667778988888763 4688888788887774 455544222222221 11
Q ss_pred HHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchh-----hHHHHhhh-cC------CceEEEeecCCChhhH
Q 003260 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVK-----QKEKIASF-KI------SVDVLTLSATPIPRTL 446 (835)
Q Consensus 379 l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~-----~~e~l~~l-~~------~~~vL~lSATp~p~tl 446 (835)
++.+.. ..-+++++|++|=|=|+-.+ ..+++.+. .+ .--++.+-||.....+
T Consensus 211 fDAi~~----------------Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal 274 (340)
T COG0552 211 FDAIQA----------------AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNAL 274 (340)
T ss_pred HHHHHH----------------HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHH
Confidence 111111 12357778888888776321 22333222 11 1234556899877777
Q ss_pred HHHHhc
Q 003260 447 YLALTG 452 (835)
Q Consensus 447 ~~~~~g 452 (835)
..+..+
T Consensus 275 ~QAk~F 280 (340)
T COG0552 275 SQAKIF 280 (340)
T ss_pred HHHHHH
Confidence 665543
No 317
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.41 E-value=0.2 Score=50.01 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=29.8
Q ss_pred EEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccH
Q 003260 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 341 (835)
Q Consensus 306 ~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr 341 (835)
+.|..++|.|||.+++-.++.++..|.+|+++.=.+
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlK 40 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLK 40 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeC
Confidence 566677799999999999999999999999965333
No 318
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.39 E-value=0.38 Score=58.23 Aligned_cols=43 Identities=21% Similarity=0.160 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHH
Q 003260 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
.|..+...+...+..+.-....|++||.|+|||.++...+-..
T Consensus 20 Gq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 20 GQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 4666666665544333334567999999999999876555444
No 319
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.38 E-value=0.58 Score=56.35 Aligned_cols=42 Identities=24% Similarity=0.212 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
|..++..+.+.+.++.-....|++||.|+|||.++...+-..
T Consensus 21 Qe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 21 QETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred CHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 444544444434332234668899999999999986655443
No 320
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.35 E-value=0.93 Score=45.28 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=24.9
Q ss_pred EEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 306 ~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
+++.|++|+|||..+...+......+.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 578999999999998766665555677666554
No 321
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=94.30 E-value=0.17 Score=62.66 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=38.2
Q ss_pred EEcCcCCcCCCCCC----------------------c----------cEEEEecCCCCChhHHHH--HhcccCCCCCceE
Q 003260 549 ICTNIVESGLDIQN----------------------A----------NTIIVQDVQQFGLAQLYQ--LRGRVGRADKEAH 594 (835)
Q Consensus 549 VaT~iie~GIDIp~----------------------v----------~~VIi~d~p~~sl~~l~Q--r~GRaGR~g~~G~ 594 (835)
|+|...+.|+|+|. + ++||.|++.. +.-.-+| ++||.|| ++.
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~-sfIR~IEvyra~r~~r---~~r 506 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDI-SFIRQLEVYKASRPLR---PLR 506 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCCh-HHHHHHHHHHccCCCC---CcE
Confidence 77888899999996 4 8999999764 4433445 5566555 578
Q ss_pred EEEEecCCCc
Q 003260 595 AYLFYPDKSL 604 (835)
Q Consensus 595 ay~l~~~~~~ 604 (835)
+|+++..+..
T Consensus 507 VyfL~y~~S~ 516 (814)
T TIGR00596 507 VYFLYYGGSI 516 (814)
T ss_pred EEEEEECCcH
Confidence 9998887754
No 322
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.30 E-value=0.2 Score=60.26 Aligned_cols=79 Identities=20% Similarity=0.331 Sum_probs=68.1
Q ss_pred cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccE
Q 003260 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 408 (835)
Q Consensus 329 ~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~l 408 (835)
..+.++||.|+|+..+.++++.+.+. ++.+..+++..+..++...++.+.+|+++|+|+|. .+...+++.++++
T Consensus 255 ~~~~k~LVF~nt~~~ae~l~~~L~~~-----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-v~arGIDip~V~~ 328 (572)
T PRK04537 255 SEGARTMVFVNTKAFVERVARTLERH-----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-VAARGLHIDGVKY 328 (572)
T ss_pred ccCCcEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-hhhcCCCccCCCE
Confidence 34678999999999999998888763 68899999999999999999999999999999994 5666788888988
Q ss_pred EEEcC
Q 003260 409 LVVDE 413 (835)
Q Consensus 409 lVIDE 413 (835)
||.-+
T Consensus 329 VInyd 333 (572)
T PRK04537 329 VYNYD 333 (572)
T ss_pred EEEcC
Confidence 87643
No 323
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.30 E-value=0.49 Score=51.75 Aligned_cols=21 Identities=43% Similarity=0.594 Sum_probs=17.2
Q ss_pred CCcEEEEccCCCcccHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a 323 (835)
+.++++.||+|+|||.+|...
T Consensus 58 ~~~vll~G~pGTGKT~lA~~i 78 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRM 78 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHH
Confidence 357999999999999987443
No 324
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.29 E-value=0.15 Score=55.59 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=25.2
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcC-C-CEEEEEc
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSA-G-KQAMVLA 338 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~-g-~qvlVLv 338 (835)
.+..++++||||+|||..+...+...... | .+|.++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 35578899999999998876555444433 3 5665554
No 325
>PRK05642 DNA replication initiation factor; Validated
Probab=94.28 E-value=0.41 Score=50.75 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=23.1
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
..++++|++|+|||-.+...+......+.+|+|+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 56889999999999764333323334466666654
No 326
>PTZ00110 helicase; Provisional
Probab=94.20 E-value=0.23 Score=59.29 Aligned_cols=85 Identities=12% Similarity=0.128 Sum_probs=70.3
Q ss_pred HHHHHHHHc-CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc
Q 003260 321 LRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS 399 (835)
Q Consensus 321 l~a~l~~l~-~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~ 399 (835)
+..++..+. .+.++||.|+++.-|..++..+... ++.+..+++..+..++...++.+++|+.+|+|+|. .+..
T Consensus 366 L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~-----g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-v~~r 439 (545)
T PTZ00110 366 LKMLLQRIMRDGDKILIFVETKKGADFLTKELRLD-----GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-VASR 439 (545)
T ss_pred HHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHc-----CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-hhhc
Confidence 344444443 6789999999999999988888642 67889999999999999999999999999999995 5666
Q ss_pred ccccCCccEEEE
Q 003260 400 RVVYNNLGLLVV 411 (835)
Q Consensus 400 ~l~~~~l~llVI 411 (835)
.+++.++.+||.
T Consensus 440 GIDi~~v~~VI~ 451 (545)
T PTZ00110 440 GLDVKDVKYVIN 451 (545)
T ss_pred CCCcccCCEEEE
Confidence 788889998885
No 327
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.15 E-value=0.21 Score=57.86 Aligned_cols=88 Identities=20% Similarity=0.291 Sum_probs=76.7
Q ss_pred HHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCC
Q 003260 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNN 405 (835)
Q Consensus 326 ~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~ 405 (835)
..+..+-+++|.+-|+-+|.+..+-+.+. |++|.++|+..+.-++-++++.++.|.+||+||- .+|...+++..
T Consensus 441 ~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~-----gikv~YlHSdidTlER~eIirdLR~G~~DvLVGI-NLLREGLDiPE 514 (663)
T COG0556 441 KRVAKNERVLVTTLTKKMAEDLTEYLKEL-----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-NLLREGLDLPE 514 (663)
T ss_pred HHHhcCCeEEEEeehHHHHHHHHHHHHhc-----CceEEeeeccchHHHHHHHHHHHhcCCccEEEee-hhhhccCCCcc
Confidence 34556789999999998888877666653 8999999999999999999999999999999995 68888899999
Q ss_pred ccEEEEcCccccch
Q 003260 406 LGLLVVDEEQRFGV 419 (835)
Q Consensus 406 l~llVIDEaHr~g~ 419 (835)
+++|.|=.||.-|+
T Consensus 515 VsLVAIlDADKeGF 528 (663)
T COG0556 515 VSLVAILDADKEGF 528 (663)
T ss_pred eeEEEEeecCcccc
Confidence 99999988998776
No 328
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.13 E-value=0.29 Score=56.00 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=19.6
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
+...|+.||.|+|||..+...+-..
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 5568999999999999876555443
No 329
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.42 Score=54.21 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=34.9
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHH
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
.-+..|...+..++.....+..|.++++.|+||+|||.+.-..+
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~ 63 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVM 63 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHH
Confidence 44677888887777777677888899999999999998854443
No 330
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.03 E-value=0.35 Score=58.50 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~ 326 (835)
|..++..+.+.+..+.-+.-.|++||.|+|||.++...+..
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~ 62 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKT 62 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHH
Confidence 66666666665544444455899999999999976554433
No 331
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.02 E-value=0.25 Score=57.11 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=33.9
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHH-cCCCEEEEEc--ccHHHHHHHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLA--PTIVLAKQHFDVVSE 353 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l-~~g~qvlVLv--Ptr~LA~Q~~~~~~~ 353 (835)
+.-++++|++|+|||+++...+.... ..|.+|+++. +.|..|.++...+..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~ 152 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQ 152 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHH
Confidence 55688999999999999876665543 4577776664 334445554444444
No 332
>CHL00181 cbbX CbbX; Provisional
Probab=94.01 E-value=0.56 Score=51.42 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=18.3
Q ss_pred CCcEEEEccCCCcccHHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l 325 (835)
+.++++.||+|+|||.+|-..+-
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999754443
No 333
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.01 E-value=0.39 Score=56.96 Aligned_cols=42 Identities=21% Similarity=0.119 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
|..+...+...+..+.-+.-.|++||.|+|||.++...+-..
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 555555555555444444456899999999998876554443
No 334
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.95 E-value=0.34 Score=53.37 Aligned_cols=21 Identities=38% Similarity=0.283 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCcccHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a 323 (835)
+.-++++||+|+|||..+...
T Consensus 43 ~~~lll~G~~G~GKT~la~~l 63 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKAL 63 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHH
Confidence 444555899999999875433
No 335
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.94 E-value=0.44 Score=53.09 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=18.9
Q ss_pred CCCCcEEEEccCCCcccHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
..+..+++.||+|+|||..+...+
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia 72 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIA 72 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHH
Confidence 345679999999999998875443
No 336
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=93.92 E-value=0.16 Score=58.44 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=66.7
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
...+++|.++++.-+..+++.+... |+++..++|..+..++...++.+.+|+++|+|+|. .+...+++.++++|
T Consensus 254 ~~~~~lVF~~t~~~~~~l~~~L~~~-----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-v~~rGiDip~v~~V 327 (423)
T PRK04837 254 WPDRAIIFANTKHRCEEIWGHLAAD-----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-VAARGLHIPAVTHV 327 (423)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhC-----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-hhhcCCCccccCEE
Confidence 3578999999999999888888653 68999999999999999999999999999999994 56667888888887
Q ss_pred EEcC
Q 003260 410 VVDE 413 (835)
Q Consensus 410 VIDE 413 (835)
|.-+
T Consensus 328 I~~d 331 (423)
T PRK04837 328 FNYD 331 (423)
T ss_pred EEeC
Confidence 7543
No 337
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.86 E-value=0.065 Score=64.03 Aligned_cols=126 Identities=20% Similarity=0.224 Sum_probs=76.8
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-CCEEEEEcccHHHHHHHH-HHHHHhhcCC
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHF-DVVSERFSKY 358 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-g~qvlVLvPtr~LA~Q~~-~~~~~~f~~~ 358 (835)
..+|+|.+-++.+-. +.-..++++.++-+|||++.+..+...+.. ...++++.||..+|..+. .+|.-.+...
T Consensus 16 ~~~Py~~eimd~~~~-----~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 16 DRTPYLREIMDALSD-----PSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCChhHHHHHHhcCC-----cCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 889999988776632 334679999999999999877666555543 457999999999999987 5566555554
Q ss_pred CCcEEEEecCCCCHHHHHH-HHHhhhcCCcceeecc--HHHhhcccccCCccEEEEcCcccc
Q 003260 359 PDIKVGLLSRFQSKAEKEE-HLDMIKHGHLNIIVGT--HSLLGSRVVYNNLGLLVVDEEQRF 417 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~-~l~~l~~G~~dIIVgT--~~~L~~~l~~~~l~llVIDEaHr~ 417 (835)
|.++-. +....+...... ..+.+. |..-.+++. |..|. -..+.+|++||.+++
T Consensus 91 p~l~~~-~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~~~l~----s~~~r~~~~DEvD~~ 146 (557)
T PF05876_consen 91 PVLRRK-LSPSKSRDSGNTILYKRFP-GGFLYLVGANSPSNLR----SRPARYLLLDEVDRY 146 (557)
T ss_pred HHHHHH-hCchhhcccCCchhheecC-CCEEEEEeCCCCcccc----cCCcCEEEEechhhc
Confidence 433311 111000000011 112222 322223332 33333 346789999999998
No 338
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.79 E-value=1.6 Score=47.36 Aligned_cols=121 Identities=17% Similarity=0.145 Sum_probs=62.8
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcc--cH-HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP--TI-VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvP--tr-~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l 379 (835)
+..++++|++|+|||..+...+......+..+.++.- .+ ..+.|+..... .+ ++.+.... +...-...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~-~~----~~~~~~~~---~~~~l~~~l 146 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVK-TI----GFEVIAVR---DEAAMTRAL 146 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhh-hc----CceEEecC---CHHHHHHHH
Confidence 4678999999999999875554444444566665543 22 45555443222 11 34433221 111111111
Q ss_pred HhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccc--hhhHHHHhh----hcCCceEEEeecCCChhhHHHH
Q 003260 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFG--VKQKEKIAS----FKISVDVLTLSATPIPRTLYLA 449 (835)
Q Consensus 380 ~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g--~~~~e~l~~----l~~~~~vL~lSATp~p~tl~~~ 449 (835)
..+. ...++++||||-+=+.- ....+.+.. ..+...++.+|||.........
T Consensus 147 ~~l~------------------~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~ 204 (270)
T PRK06731 147 TYFK------------------EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 204 (270)
T ss_pred HHHH------------------hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH
Confidence 1111 12357889999886642 222222222 2334457789999866555433
No 339
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=93.75 E-value=0.26 Score=56.18 Aligned_cols=120 Identities=22% Similarity=0.217 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc--CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEE
Q 003260 287 KKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVG 364 (835)
Q Consensus 287 ~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~--~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~ 364 (835)
+++++.+.. -.+.+..+|+.|+||+||++.|-..-..... .++ .|-+.--+++...... +.| |..-+
T Consensus 88 ~~~~eqik~---~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~P--FI~~NCa~~~en~~~~--eLF----G~~kG 156 (403)
T COG1221 88 QELREQIKA---YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAP--FIAFNCAAYSENLQEA--ELF----GHEKG 156 (403)
T ss_pred HHHHHHHHh---hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCC--EEEEEHHHhCcCHHHH--HHh----ccccc
Confidence 455666655 2466889999999999999987433222211 222 2223322232222111 134 45555
Q ss_pred EecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhhh-------------cCC
Q 003260 365 LLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF-------------KIS 431 (835)
Q Consensus 365 ~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l-------------~~~ 431 (835)
.++|..... .| . +...+=|.+.+||.|++.....+++... ...
T Consensus 157 aftGa~~~k----------~G----------l----fe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~ 212 (403)
T COG1221 157 AFTGAQGGK----------AG----------L----FEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRP 212 (403)
T ss_pred eeecccCCc----------Cc----------h----heecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcC
Confidence 555521110 01 1 1234558899999999866555444332 124
Q ss_pred ceEEEeecCC
Q 003260 432 VDVLTLSATP 441 (835)
Q Consensus 432 ~~vL~lSATp 441 (835)
.+|-+.+||-
T Consensus 213 ~dVRli~AT~ 222 (403)
T COG1221 213 VDVRLICATT 222 (403)
T ss_pred CCceeeeccc
Confidence 5566677774
No 340
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.71 E-value=0.31 Score=57.06 Aligned_cols=78 Identities=12% Similarity=0.199 Sum_probs=67.5
Q ss_pred cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccE
Q 003260 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 408 (835)
Q Consensus 329 ~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~l 408 (835)
..++.++|.++++.-+.++++.+.+. |+.+..++++.+..++....+.+.+|+++|+|+|. .+...+++.++++
T Consensus 224 ~~~~~~IIF~~s~~~~e~la~~L~~~-----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~-~~~~GID~p~V~~ 297 (470)
T TIGR00614 224 FKGKSGIIYCPSRKKSEQVTASLQNL-----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV-AFGMGINKPDVRF 297 (470)
T ss_pred cCCCceEEEECcHHHHHHHHHHHHhc-----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEec-hhhccCCcccceE
Confidence 45677899999999999998888763 78999999999999999999999999999999995 5666788888888
Q ss_pred EEEc
Q 003260 409 LVVD 412 (835)
Q Consensus 409 lVID 412 (835)
||.-
T Consensus 298 VI~~ 301 (470)
T TIGR00614 298 VIHY 301 (470)
T ss_pred EEEe
Confidence 8854
No 341
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.66 E-value=0.14 Score=55.26 Aligned_cols=39 Identities=15% Similarity=0.069 Sum_probs=32.4
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcc
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvP 339 (835)
+++.-++|+|++|+|||..++..+...+.+|..++|+.-
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 346678999999999999998888777777888888873
No 342
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.65 E-value=0.85 Score=53.15 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=24.9
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcc
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvP 339 (835)
..+++.||+|+|||-.+...+-.....+..++++..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 458999999999997754433333345677777653
No 343
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.63 E-value=0.64 Score=52.10 Aligned_cols=48 Identities=10% Similarity=0.030 Sum_probs=36.9
Q ss_pred CCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc
Q 003260 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329 (835)
Q Consensus 282 ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~ 329 (835)
+.|+|..++..+.+.+..+.-+.-.|++||.|+||+..+...+-..+.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC 50 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMC 50 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcC
Confidence 568899999998877655555677889999999999887665554443
No 344
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=93.56 E-value=0.33 Score=56.59 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=64.9
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEE
Q 003260 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llV 410 (835)
..++||.++++.-+..+++.+... ++.+..+++..+..++...+..+.+|+++|+|+|. .+...+++.++++||
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-v~~rGiDip~v~~VI 318 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKD-----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-IAARGLDIEELPHVV 318 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-HHhcCCCcccCCEEE
Confidence 468999999999999988888653 68899999999999999999999999999999996 666678888888776
Q ss_pred E
Q 003260 411 V 411 (835)
Q Consensus 411 I 411 (835)
.
T Consensus 319 ~ 319 (456)
T PRK10590 319 N 319 (456)
T ss_pred E
Confidence 3
No 345
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=93.54 E-value=0.32 Score=56.19 Aligned_cols=76 Identities=13% Similarity=0.218 Sum_probs=66.1
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
...+++|.++++.-+..+++.+... ++.+..++|+.+..++...+..+.+|+++|+|+|. .+...+++.++.+|
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-~~~~GiDip~v~~V 317 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKA-----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-VAARGIDIDDVSHV 317 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-ccccCccCCCCCEE
Confidence 3578999999999999988888752 68999999999999999999999999999999994 56667788888888
Q ss_pred EE
Q 003260 410 VV 411 (835)
Q Consensus 410 VI 411 (835)
|.
T Consensus 318 I~ 319 (434)
T PRK11192 318 IN 319 (434)
T ss_pred EE
Confidence 73
No 346
>PRK13767 ATP-dependent helicase; Provisional
Probab=93.52 E-value=0.3 Score=61.66 Aligned_cols=90 Identities=18% Similarity=0.285 Sum_probs=73.3
Q ss_pred HHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcC-CCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccc
Q 003260 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK-YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV 402 (835)
Q Consensus 324 ~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~-~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~ 402 (835)
+...+..++++||.|+|+..|..++..+.+.+.. +.+..+...+|+.+..++....+.+++|..+|+|||.. |...++
T Consensus 277 L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~-Le~GID 355 (876)
T PRK13767 277 LHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTS-LELGID 355 (876)
T ss_pred HHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-HHhcCC
Confidence 3344556789999999999999999998875542 22467999999999999999999999999999999964 555688
Q ss_pred cCCccEEEEcCc
Q 003260 403 YNNLGLLVVDEE 414 (835)
Q Consensus 403 ~~~l~llVIDEa 414 (835)
+.++++||.-..
T Consensus 356 ip~Vd~VI~~~~ 367 (876)
T PRK13767 356 IGYIDLVVLLGS 367 (876)
T ss_pred CCCCcEEEEeCC
Confidence 889999986443
No 347
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.49 E-value=0.65 Score=48.76 Aligned_cols=35 Identities=31% Similarity=0.483 Sum_probs=21.9
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHH---cCCCEEEEEcc
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVV---SAGKQAMVLAP 339 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l---~~g~qvlVLvP 339 (835)
..++|+|++|+|||-. +.++...+ ..+.+|+++..
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEH
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecH
Confidence 4589999999999974 34443332 23556666543
No 348
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.48 E-value=0.7 Score=51.64 Aligned_cols=44 Identities=18% Similarity=0.147 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHH
Q 003260 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l 328 (835)
-|..++..+.+.+..+.-+.-.|++||.|+|||..+...+-..+
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~ 53 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLF 53 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHC
Confidence 36777777776664444455669999999999988765544443
No 349
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.46 E-value=0.62 Score=52.63 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHH
Q 003260 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a 323 (835)
.|..++..+.+.+..+.-+...|++||.|+|||..+...
T Consensus 21 g~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 21 GQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 466666666665544444567899999999999876544
No 350
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.43 E-value=0.55 Score=57.31 Aligned_cols=145 Identities=19% Similarity=0.140 Sum_probs=86.3
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC--CCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~--g~qvlVLvPtr~LA~Q~~~~~~~~f~~~ 358 (835)
..|.+|.+++..+..-+ +. +..-+++.|+=|=|||.++=+++...... ...++|.+|+.+-++..++-..+.|...
T Consensus 211 ~~T~dQ~~~l~~~~~l~-~~-~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~l 288 (758)
T COG1444 211 CLTEDQAEALEILERLL-DA-PKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFL 288 (758)
T ss_pred hcChhHHHHHHHHHHHH-cC-CCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHh
Confidence 46889999888776654 32 23478899999999999865444333332 3589999999988877776655544333
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhhhcCCceEEEee
Q 003260 359 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLS 438 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l~~~~~vL~lS 438 (835)
|.+-.+..... . ...........|=+-+|.... ..-++||||||=-++......+. ...+.++||
T Consensus 289 -g~~~~v~~d~~--g----~~~~~~~~~~~i~y~~P~~a~-----~~~DllvVDEAAaIplplL~~l~---~~~~rv~~s 353 (758)
T COG1444 289 -GYKRKVAPDAL--G----EIREVSGDGFRIEYVPPDDAQ-----EEADLLVVDEAAAIPLPLLHKLL---RRFPRVLFS 353 (758)
T ss_pred -CCccccccccc--c----ceeeecCCceeEEeeCcchhc-----ccCCEEEEehhhcCChHHHHHHH---hhcCceEEE
Confidence 33311111100 0 000011111234444554332 11689999999988876555443 334677889
Q ss_pred cCCC
Q 003260 439 ATPI 442 (835)
Q Consensus 439 ATp~ 442 (835)
.|..
T Consensus 354 TTIh 357 (758)
T COG1444 354 TTIH 357 (758)
T ss_pred eeec
Confidence 8963
No 351
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.36 E-value=0.82 Score=48.42 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=36.7
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~ 352 (835)
+.+.-+++.|++|+|||..++..+...+.+|..++++.... -..+..+.+.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~-~~~~~~~~~~ 72 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL-TTTEFIKQMM 72 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC-CHHHHHHHHH
Confidence 34567899999999999998777777667788888887432 3344444443
No 352
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.34 E-value=1 Score=52.48 Aligned_cols=57 Identities=21% Similarity=0.204 Sum_probs=31.0
Q ss_pred CHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc--CCCEEEEEcc
Q 003260 283 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAP 339 (835)
Q Consensus 283 tp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~--~g~qvlVLvP 339 (835)
.+....|...+.+-..+......++++|++|+|||-.+...+-.... .+..++++..
T Consensus 110 g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 110 GPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 34444455444432211122346899999999999775433332222 2456666643
No 353
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=93.34 E-value=0.63 Score=43.28 Aligned_cols=80 Identities=20% Similarity=0.392 Sum_probs=65.7
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
.+.+++|.+++..-+.++++.+.+ ++..+..+++..+..++......+.++...|+++|. .+...+++.+.+.+
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~-~~~~G~d~~~~~~v 100 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK-----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATD-VIARGIDLPNVSVV 100 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh-----cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcC-hhhcCcChhhCCEE
Confidence 567899999999988888888775 257899999999988999999999999989999986 45566777778877
Q ss_pred EEcCcc
Q 003260 410 VVDEEQ 415 (835)
Q Consensus 410 VIDEaH 415 (835)
|+....
T Consensus 101 i~~~~~ 106 (131)
T cd00079 101 INYDLP 106 (131)
T ss_pred EEeCCC
Confidence 776664
No 354
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.33 E-value=0.15 Score=64.13 Aligned_cols=135 Identities=16% Similarity=0.199 Sum_probs=84.5
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHH------------------cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcE
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVV------------------SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIK 362 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l------------------~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~ 362 (835)
..+.++++.-..|+|||..-+...+... ...+-+||++|.. +..||.+++...... +++
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~a-Il~QW~~EI~kH~~~--~lK 448 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNA-ILMQWFEEIHKHISS--LLK 448 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHH-HHHHHHHHHHHhccc--cce
Confidence 3456778888999999988543332211 1135689999985 556999999875443 467
Q ss_pred EEEecCCCCH--HHHHHHHHhhhcCCcceeeccHHHhhcccccC-----------------------C--ccEEEEcCcc
Q 003260 363 VGLLSRFQSK--AEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYN-----------------------N--LGLLVVDEEQ 415 (835)
Q Consensus 363 V~~l~g~~s~--~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~-----------------------~--l~llVIDEaH 415 (835)
|..+-|-... .+. ..+ -++|||++|+..|...+.+. . +=-|++||||
T Consensus 449 v~~Y~Girk~~~~~~-~el-----~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQ 522 (1394)
T KOG0298|consen 449 VLLYFGIRKTFWLSP-FEL-----LQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQ 522 (1394)
T ss_pred EEEEechhhhcccCc-hhh-----hccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHH
Confidence 7766663211 011 111 25899999998886433111 0 1128999999
Q ss_pred ccch--hhHHHHhhhcCCceEEEeecCCChh
Q 003260 416 RFGV--KQKEKIASFKISVDVLTLSATPIPR 444 (835)
Q Consensus 416 r~g~--~~~e~l~~l~~~~~vL~lSATp~p~ 444 (835)
..-. .....+...-+..+..+.|+||+.+
T Consensus 523 MvesssS~~a~M~~rL~~in~W~VTGTPiq~ 553 (1394)
T KOG0298|consen 523 MVESSSSAAAEMVRRLHAINRWCVTGTPIQK 553 (1394)
T ss_pred hhcchHHHHHHHHHHhhhhceeeecCCchhh
Confidence 8633 2233333344677889999999776
No 355
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.32 E-value=0.39 Score=51.69 Aligned_cols=51 Identities=10% Similarity=0.049 Sum_probs=35.3
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcC-CCEEEEEcccHHHHHHHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~-g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
.+.-++|.|++|+|||..++..+...... |..|+++.-.- -..++..++..
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~-~~~~~~~r~~~ 80 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE-PVVRTARRLLG 80 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc-CHHHHHHHHHH
Confidence 45678999999999999877766666555 77888876422 23444555544
No 356
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.31 E-value=0.21 Score=55.59 Aligned_cols=58 Identities=19% Similarity=0.026 Sum_probs=43.5
Q ss_pred HHHHHHHH-hhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHH
Q 003260 288 KAFLDVER-DLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 288 ~AI~~il~-dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~ 347 (835)
.+++.++. + .-+++.-+.|+||+|||||..++..+......|..++++-+...+-.+.
T Consensus 41 ~~LD~~Lg~G--Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~ 99 (325)
T cd00983 41 LSLDIALGIG--GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVY 99 (325)
T ss_pred HHHHHHhcCC--CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHH
Confidence 35555553 1 1245677889999999999999988888777888999998877666543
No 357
>PRK10867 signal recognition particle protein; Provisional
Probab=93.27 E-value=0.41 Score=55.39 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=33.9
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcC-CCEEEEEc--ccHHHHHHHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLA--PTIVLAKQHFDVVSE 353 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~-g~qvlVLv--Ptr~LA~Q~~~~~~~ 353 (835)
+.-++++|++|+|||+++...+...... |.+|+++. +.|.-+......+.+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~ 153 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGE 153 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHh
Confidence 5667899999999999887666555555 77776654 445555433344433
No 358
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.26 E-value=0.59 Score=57.84 Aligned_cols=39 Identities=31% Similarity=0.445 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhhhc-------CCCC-CcEEEEccCCCcccHHHHHH
Q 003260 285 DQKKAFLDVERDLTE-------RETP-MDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~-------~~~~-~d~Ll~a~TGsGKT~val~a 323 (835)
-|.+|+..+...+.. ..+| ..++++||||+|||+.+-..
T Consensus 462 GQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~L 508 (758)
T PRK11034 462 GQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL 508 (758)
T ss_pred CcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHH
Confidence 367777766654431 1233 36899999999999987533
No 359
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=93.25 E-value=0.021 Score=63.89 Aligned_cols=43 Identities=28% Similarity=0.190 Sum_probs=37.4
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHH
Q 003260 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 279 ~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l 328 (835)
-.-||.+|.+||+.|+- +.|+|..+.||||||-+|.+|+++.+
T Consensus 22 w~lptdvqaeaiplilg-------ggdvlmaaetgsgktgaf~lpilqiv 64 (725)
T KOG0349|consen 22 WTLPTDVQAEAIPLILG-------GGDVLMAAETGSGKTGAFCLPILQIV 64 (725)
T ss_pred cccccccccccccEEec-------CCcEEEEeccCCCCccceehhhHHHH
Confidence 34689999999999874 57999999999999999999988754
No 360
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.20 E-value=0.34 Score=60.93 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHhhhc-------CCCC-CcEEEEccCCCcccHHHHHHH
Q 003260 285 DQKKAFLDVERDLTE-------RETP-MDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~-------~~~~-~d~Ll~a~TGsGKT~val~a~ 324 (835)
-|..|+..+...+.. ..+| ..++++||||+|||..+-..+
T Consensus 572 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa 619 (857)
T PRK10865 572 GQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALA 619 (857)
T ss_pred CCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHH
Confidence 577777776655432 1222 358999999999999875443
No 361
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=93.05 E-value=0.27 Score=53.62 Aligned_cols=43 Identities=23% Similarity=0.216 Sum_probs=31.4
Q ss_pred HhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHH
Q 003260 284 PDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 284 p~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
..|..++..+++.+.. ...-+.|+.||.|+|||-+++..+-+.
T Consensus 39 ~gQe~vV~~L~~a~~~-~~lp~~LFyGPpGTGKTStalafar~L 81 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLR-RILPHYLFYGPPGTGKTSTALAFARAL 81 (346)
T ss_pred cchHHHHHHHHHHHhh-cCCceEEeeCCCCCcHhHHHHHHHHHh
Confidence 4578888877776654 334468999999999999876655433
No 362
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=93.04 E-value=0.15 Score=50.39 Aligned_cols=51 Identities=25% Similarity=0.416 Sum_probs=41.8
Q ss_pred CCCCCCCcccccccccEEEeeEEEeecCCCCCccceEEEEEcCCC--cccChhhH
Q 003260 152 YSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGM--AKLPVKQA 204 (835)
Q Consensus 152 ~~~~~gd~vvh~~~Gig~~~g~~~~~~~~~~~~~~~~~~~y~~~~--~~~~~~~~ 204 (835)
..+++||.||=..||.|...+|+...- .|+..+|.+|.|..++ ..+|+..+
T Consensus 3 ~~Fk~Gd~VVYP~HGvG~I~~Ieeke~--~Ge~~~yyVI~f~~~dm~v~VP~~ka 55 (166)
T COG1329 3 MAFKIGDHVVYPAHGVGIIQAIEEKEI--AGETLEYYVIDFPQSDMTVMVPVAKA 55 (166)
T ss_pred ccccCCCEEEecCCCceeeehhhhHhh--cCceeEEEEEEEcCCCcEEEeeccch
Confidence 468899999999999999999973322 3789999999999985 45788764
No 363
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.03 E-value=0.052 Score=64.74 Aligned_cols=155 Identities=19% Similarity=0.162 Sum_probs=90.2
Q ss_pred CCCHhHHHHHHHHHHhh---hcCCCCCcEEEEccCCCcc--cHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhh
Q 003260 281 EPTPDQKKAFLDVERDL---TERETPMDRLICGDVGFGK--TEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl---~~~~~~~d~Ll~a~TGsGK--T~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f 355 (835)
.++..|.+|+--..+.- .-+...-..||-...|.|| |.+.+ ..-..+...+++|++.-...|--...+.++. .
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgi-IfeNyLkGRKrAlW~SVSsDLKfDAERDL~D-i 341 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGI-IFENYLKGRKRALWFSVSSDLKFDAERDLRD-I 341 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEE-EehhhhcccceeEEEEeccccccchhhchhh-c
Confidence 56788999986554311 0112223456655556666 54432 2234455568999999888887777777776 4
Q ss_pred cCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc---------------ccc--CC-ccEEEEcCcccc
Q 003260 356 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR---------------VVY--NN-LGLLVVDEEQRF 417 (835)
Q Consensus 356 ~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~---------------l~~--~~-l~llVIDEaHr~ 417 (835)
+.. ++.|..++-+.-.+-..+.-..++.| |+++|+..|... +.| .+ =|+||+||||+.
T Consensus 342 gA~-~I~V~alnK~KYakIss~en~n~krG---ViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkA 417 (1300)
T KOG1513|consen 342 GAT-GIAVHALNKFKYAKISSKENTNTKRG---VIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKA 417 (1300)
T ss_pred CCC-CccceehhhcccccccccccCCccce---eEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhh
Confidence 443 67887776553221111111222334 999998776421 111 12 278999999973
Q ss_pred -------ch---h---hHHHHhhhcCCceEEEeecCC
Q 003260 418 -------GV---K---QKEKIASFKISVDVLTLSATP 441 (835)
Q Consensus 418 -------g~---~---~~e~l~~l~~~~~vL~lSATp 441 (835)
+. + ..-.|.+.-++.+||..|||-
T Consensus 418 KNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATG 454 (1300)
T KOG1513|consen 418 KNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATG 454 (1300)
T ss_pred cccccccCCCcCcccHhHHHHHHhCCCceEEEeeccC
Confidence 11 1 112344556899999999995
No 364
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.02 E-value=0.31 Score=57.01 Aligned_cols=92 Identities=12% Similarity=0.137 Sum_probs=71.5
Q ss_pred CCcccHHHHHHHHHHHc--CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCccee
Q 003260 313 GFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNII 390 (835)
Q Consensus 313 GsGKT~val~a~l~~l~--~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dII 390 (835)
...|=.. +..++.... .+.++||.|-|+--|.++...++.. +..+..+||+.+..+|...++.+.+|++.|+
T Consensus 322 ~~~K~~~-l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~-----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vL 395 (519)
T KOG0331|consen 322 ETAKLRK-LGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK-----GWPAVAIHGDKSQSERDWVLKGFREGKSPVL 395 (519)
T ss_pred HHHHHHH-HHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc-----CcceeeecccccHHHHHHHHHhcccCCcceE
Confidence 4445322 344444443 4568999999999999998888752 4789999999999999999999999999999
Q ss_pred eccHHHhhcccccCCccEEEE
Q 003260 391 VGTHSLLGSRVVYNNLGLLVV 411 (835)
Q Consensus 391 VgT~~~L~~~l~~~~l~llVI 411 (835)
|+|.-. .+.+++.++++||-
T Consensus 396 VATdVA-aRGLDi~dV~lVIn 415 (519)
T KOG0331|consen 396 VATDVA-ARGLDVPDVDLVIN 415 (519)
T ss_pred EEcccc-cccCCCccccEEEe
Confidence 999633 34567788888874
No 365
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.98 E-value=0.13 Score=53.85 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=20.4
Q ss_pred CCccEEEEcCccccchhhHHHHhhhcCCceEEE
Q 003260 404 NNLGLLVVDEEQRFGVKQKEKIASFKISVDVLT 436 (835)
Q Consensus 404 ~~l~llVIDEaHr~g~~~~e~l~~l~~~~~vL~ 436 (835)
...+.+||||++.+.......+........+++
T Consensus 61 ~~~~~liiDE~~~~~~g~l~~l~~~~~~~~~~l 93 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPPGYLLLLLSLSPAKNVIL 93 (234)
T ss_pred CcCCEEEEeccccCChHHHHHHHhhccCcceEE
Confidence 357899999999986544444444433333433
No 366
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.98 E-value=0.43 Score=49.11 Aligned_cols=39 Identities=21% Similarity=0.146 Sum_probs=34.5
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 341 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr 341 (835)
...+++.+++|-|||.+++-.++.++..|.+|+++.=.+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlK 60 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIK 60 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 357899999999999999999999999999999987544
No 367
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.93 E-value=1.3 Score=49.36 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=36.7
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~ 329 (835)
.+.|+|...+..+.+.+..+.-+.-.|++||.|.||+..+...+-..+.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC 51 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLC 51 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 4568888888888876655455667899999999999887655544443
No 368
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.92 E-value=1.3 Score=51.71 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=28.6
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHH---cCCCEEEEEcccHHHHHHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVV---SAGKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l---~~g~qvlVLvPtr~LA~Q~~~~~ 351 (835)
..+++.|++|+|||-.+ .++...+ ..+.+++++.+ ..+..+....+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHH
Confidence 45889999999999654 4444433 24567776554 45555544443
No 369
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.90 E-value=0.3 Score=54.30 Aligned_cols=46 Identities=28% Similarity=0.182 Sum_probs=37.5
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 346 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q 346 (835)
+++.-++|+||+|||||..++..+......|..++++-....+..+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV 98 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH
Confidence 4567788999999999999998888877788889888766655554
No 370
>PRK09183 transposase/IS protein; Provisional
Probab=92.88 E-value=0.5 Score=50.97 Aligned_cols=45 Identities=27% Similarity=0.300 Sum_probs=31.8
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 346 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q 346 (835)
+.+.++++.||+|+|||..+...+..+...|..|+++. ...|..+
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-AADLLLQ 144 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-HHHHHHH
Confidence 34678999999999999887655555556777887664 3344433
No 371
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=92.86 E-value=0.3 Score=55.82 Aligned_cols=131 Identities=11% Similarity=0.111 Sum_probs=72.5
Q ss_pred cEEEEccCCCcccHHHHHHHH-HHHc--CCCEEEEEcccHH-HHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHH
Q 003260 305 DRLICGDVGFGKTEVALRAIF-CVVS--AGKQAMVLAPTIV-LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~a~l-~~l~--~g~qvlVLvPtr~-LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~ 380 (835)
-.+++|..|||||.++...++ ..+. .+.+++|+-|+.. |...++..+...+..+ |+....-...... .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~-----~i- 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSM-----EI- 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCcc-----EE-
Confidence 368899999999999654443 4444 5778899999875 7777888887665554 3331111110000 00
Q ss_pred hhhc-CCcceeeccH-HHhhcccccCCccEEEEcCccccchhhHHHH-hhhcC--CceEEEeecCCCh
Q 003260 381 MIKH-GHLNIIVGTH-SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKI-ASFKI--SVDVLTLSATPIP 443 (835)
Q Consensus 381 ~l~~-G~~dIIVgT~-~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l-~~l~~--~~~vL~lSATp~p 443 (835)
.+.. | ..|++..- ..-.+......++++.+||+..+.....+.+ .+++. ....+.+|.||..
T Consensus 76 ~~~~~g-~~i~f~g~~d~~~~ik~~~~~~~~~idEa~~~~~~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 76 KILNTG-KKFIFKGLNDKPNKLKSGAGIAIIWFEEASQLTFEDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred EecCCC-eEEEeecccCChhHhhCcceeeeehhhhhhhcCHHHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 0111 3 23444322 1111111233468999999999865443332 33331 1124788999854
No 372
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.86 E-value=0.58 Score=43.78 Aligned_cols=19 Identities=37% Similarity=0.408 Sum_probs=15.1
Q ss_pred EEEEccCCCcccHHHHHHH
Q 003260 306 RLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 306 ~Ll~a~TGsGKT~val~a~ 324 (835)
+++.||+|+|||..+-..+
T Consensus 1 ill~G~~G~GKT~l~~~la 19 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALA 19 (132)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHH
Confidence 5899999999998764443
No 373
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=92.85 E-value=0.89 Score=50.50 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~ 330 (835)
|..+...+.+.+.++.-+...|++||.|+||+..+...+-..+..
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~ 53 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQ 53 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 667776666655444446789999999999998876655544433
No 374
>PRK12377 putative replication protein; Provisional
Probab=92.85 E-value=2.2 Score=45.78 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=40.9
Q ss_pred CHhHHHHHHHHH---HhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHH
Q 003260 283 TPDQKKAFLDVE---RDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 283 tp~Q~~AI~~il---~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~ 349 (835)
++.|..|+..+. +.+. .....+++.|++|+|||-.+...+-.....|..|++ ++...|..++..
T Consensus 80 ~~~~~~a~~~a~~~a~~~~--~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~-i~~~~l~~~l~~ 146 (248)
T PRK12377 80 NDGQRYALSQAKSIADELM--TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIV-VTVPDVMSRLHE 146 (248)
T ss_pred ChhHHHHHHHHHHHHHHHH--hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEE-EEHHHHHHHHHH
Confidence 466766665443 2222 123578999999999998876665555566766654 455567766544
No 375
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.82 E-value=0.55 Score=51.51 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=20.0
Q ss_pred cEEEEccCCCcccHHHHHHHHHHHc
Q 003260 305 DRLICGDVGFGKTEVALRAIFCVVS 329 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~a~l~~l~ 329 (835)
-.|++||.|+|||.++...+-....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhC
Confidence 4899999999999998766655543
No 376
>PRK08116 hypothetical protein; Validated
Probab=92.81 E-value=2.4 Score=45.98 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=40.8
Q ss_pred CCHhHHHHHHHHH---Hhhhc-CCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHH
Q 003260 282 PTPDQKKAFLDVE---RDLTE-RETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 282 ptp~Q~~AI~~il---~dl~~-~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~ 349 (835)
.++.|..|+..+. +.+.+ ...+..+++.|++|+|||-.+...+-.....+..++++ +...|..++..
T Consensus 89 ~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~-~~~~ll~~i~~ 159 (268)
T PRK08116 89 FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFV-NFPQLLNRIKS 159 (268)
T ss_pred CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHHH
Confidence 5677777665544 22211 11233499999999999988765555555556666554 45556655543
No 377
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.79 E-value=0.69 Score=57.30 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhhhc-------CCCCC-cEEEEccCCCcccHHHHHHH
Q 003260 285 DQKKAFLDVERDLTE-------RETPM-DRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~-------~~~~~-d~Ll~a~TGsGKT~val~a~ 324 (835)
-|..|+..+.+.+.. ..+|. .++++||||+|||+.+-..+
T Consensus 458 GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la 505 (731)
T TIGR02639 458 GQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLA 505 (731)
T ss_pred CcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHH
Confidence 366676666554431 12233 47899999999998874443
No 378
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.73 E-value=0.63 Score=57.62 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
|..-+..+.+-+ ......+.|+.||+|+|||.++-..+...
T Consensus 187 r~~ei~~~~~~L-~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 187 REDELERTIQVL-CRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred cHHHHHHHHHHH-hcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 444444444433 23456789999999999998865444433
No 379
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.68 E-value=0.23 Score=55.32 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=43.2
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHH---cCCCEEEEEcccHHHH
Q 003260 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV---SAGKQAMVLAPTIVLA 344 (835)
Q Consensus 272 ~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l---~~g~qvlVLvPtr~LA 344 (835)
..+...+. +++.|...+..+.. .+.++|++|+||||||... .+++..+ ..+.+++.+-.+.||.
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~------~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAID------SRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHH------cCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCcccc
Confidence 33444433 56788877776654 1468999999999999764 5555554 2456788887777764
No 380
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.68 E-value=0.91 Score=49.72 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
|..++..+...+. ......+++.|++|+|||..+-..+
T Consensus 22 ~~~~~~~l~~~i~-~~~~~~~ll~G~~G~GKt~~~~~l~ 59 (319)
T PRK00440 22 QEEIVERLKSYVK-EKNMPHLLFAGPPGTGKTTAALALA 59 (319)
T ss_pred cHHHHHHHHHHHh-CCCCCeEEEECCCCCCHHHHHHHHH
Confidence 4556655555443 2333458999999999998764433
No 381
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.67 E-value=0.21 Score=50.84 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=31.6
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 346 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q 346 (835)
..+.++++.|++|+|||-.+...+..++..|..|+++ +...|...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI-TASDLLDE 89 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE-EHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe-ecCceecc
Confidence 4568899999999999999877777777778877775 44455544
No 382
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.67 E-value=1 Score=45.70 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=20.2
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l 328 (835)
-+...|+.||.|+|||..+...+-...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 346689999999999988765544443
No 383
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.61 E-value=0.28 Score=54.08 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=42.8
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC---CCEEEEEcccHHHH
Q 003260 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLA 344 (835)
Q Consensus 272 ~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~---g~qvlVLvPtr~LA 344 (835)
+.+.+.+. +++.|...+..+.+ ...+++++|+||||||... .+++..+.. +.+++++-.+.+|.
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~------~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVL------ARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHH------cCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhhc
Confidence 34444333 45677777666653 1468999999999999764 455555432 56888888887764
No 384
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=92.59 E-value=0.52 Score=55.94 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=63.3
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEE
Q 003260 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llV 410 (835)
..+++|.+.|+..+...+..+... |+++..++|..+..++...+..+.+|+.+|+|+|.-. .+.+++.++.+||
T Consensus 273 ~~~~IVF~~tk~~~~~l~~~l~~~-----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDva-aRGiDi~~v~~Vi 346 (513)
T COG0513 273 EGRVIVFVRTKRLVEELAESLRKR-----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVA-ARGLDIPDVSHVI 346 (513)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHC-----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechh-hccCCccccceeE
Confidence 347999999999999988877763 7899999999999999999999999999999999644 4556777777764
No 385
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=92.57 E-value=1.2 Score=49.30 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~ 326 (835)
|..++..+.+.+..+.-+.-.|++||-|+|||..+...+-.
T Consensus 9 ~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~ 49 (313)
T PRK05564 9 HENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALK 49 (313)
T ss_pred cHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHH
Confidence 56666666665544444556689999999999987655543
No 386
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.51 E-value=0.87 Score=53.15 Aligned_cols=43 Identities=21% Similarity=0.125 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l 328 (835)
|..++..+.+.+..+.-+...|++||.|+|||.++...+-...
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 6666666665554333345689999999999998866554443
No 387
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.47 E-value=0.71 Score=50.04 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=17.8
Q ss_pred CCCCcEEEEccCCCcccHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a 323 (835)
+.-.++|+.||+|.|||..|...
T Consensus 50 e~lDHvLl~GPPGlGKTTLA~II 72 (332)
T COG2255 50 EALDHVLLFGPPGLGKTTLAHII 72 (332)
T ss_pred CCcCeEEeeCCCCCcHHHHHHHH
Confidence 34467899999999999876443
No 388
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.46 E-value=0.18 Score=59.78 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=40.8
Q ss_pred CCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHH
Q 003260 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 278 f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l 328 (835)
|||+|+.+|.+-+.++.+-+.+ ++--++..|||+|||+..+-+++..+
T Consensus 12 fPy~PYdIQ~~lM~elyrvLe~---GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 12 FPYTPYDIQEDLMRELYRVLEE---GKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CCCCchhHHHHHHHHHHHHHhc---CCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 7899999999999999987754 45668999999999999877777655
No 389
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.44 E-value=0.26 Score=64.46 Aligned_cols=67 Identities=22% Similarity=0.268 Sum_probs=53.9
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCC---CEEEEEcccHHHHHHHHHHHHHhhc
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG---KQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g---~qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
.+|+.|.+||.. ++.+++|.|..|||||.+.+.-+...+..+ .++++++=|+..|..+.+++.+.+.
T Consensus 1 ~~t~~Q~~ai~~---------~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 1 QWTDEQWQAIYT---------RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred CCCHHHHHHHhC---------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 368999999742 257899999999999999876666665544 3599999999999998888887654
No 390
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.32 E-value=0.54 Score=48.98 Aligned_cols=41 Identities=22% Similarity=0.226 Sum_probs=31.4
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCC------CEEEEEcccH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAG------KQAMVLAPTI 341 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g------~qvlVLvPtr 341 (835)
+.+.-+.|.|++|+|||..++..+......+ ..++++....
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 3456788999999999999887777665555 6788877543
No 391
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.31 E-value=0.21 Score=52.95 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=40.5
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
+++..++|.|++|+|||..++..+...+.+|..++++.- .+-..|+.+++..
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~-ee~~~~i~~~~~~ 70 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL-EEHPVQVRRNMAQ 70 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe-eCCHHHHHHHHHH
Confidence 456788999999999999998888887777888888874 3455566666654
No 392
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=92.29 E-value=0.55 Score=54.76 Aligned_cols=77 Identities=10% Similarity=0.110 Sum_probs=66.5
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
...+++|.|+++.-+..+++.+.+. ++.+..++|+.+..++...++.+.+|+.+|+|+|. .+...+++.++++|
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~-----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd-v~~rGiDi~~v~~V 314 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQ-----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD-VAARGLDIKALEAV 314 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec-ccccccchhcCCeE
Confidence 3567999999999999999888763 68899999999999999999999999999999995 56666778888888
Q ss_pred EEc
Q 003260 410 VVD 412 (835)
Q Consensus 410 VID 412 (835)
|.-
T Consensus 315 I~~ 317 (460)
T PRK11776 315 INY 317 (460)
T ss_pred EEe
Confidence 753
No 393
>PTZ00424 helicase 45; Provisional
Probab=92.27 E-value=0.41 Score=54.41 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=65.4
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEE
Q 003260 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llV 410 (835)
..+++|.++++.-+...++.+.+. ++.+..++++.+..++...++.+.+|+.+|+|+|. .+...+++.++++||
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~-~l~~GiDip~v~~VI 340 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHER-----DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD-LLARGIDVQQVSLVI 340 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc-cccCCcCcccCCEEE
Confidence 468999999999888877777653 67899999999999999999999999999999995 666778889999888
Q ss_pred Ec
Q 003260 411 VD 412 (835)
Q Consensus 411 ID 412 (835)
.-
T Consensus 341 ~~ 342 (401)
T PTZ00424 341 NY 342 (401)
T ss_pred EE
Confidence 53
No 394
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.21 E-value=0.41 Score=56.36 Aligned_cols=53 Identities=28% Similarity=0.372 Sum_probs=40.9
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHH------cCCCEEEEEcccHHHHHHHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVV------SAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l------~~g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
+++.-++|+|..|||||.+|+.-+...+ .++++|+|+.|.+.+..-+.+.+-+
T Consensus 224 ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPe 282 (747)
T COG3973 224 EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPE 282 (747)
T ss_pred cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchh
Confidence 4566789999999999999976544333 2356799999999998877666654
No 395
>PRK09354 recA recombinase A; Provisional
Probab=92.17 E-value=0.41 Score=53.74 Aligned_cols=56 Identities=25% Similarity=0.093 Sum_probs=42.8
Q ss_pred HHHHHHH-hhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHH
Q 003260 289 AFLDVER-DLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 346 (835)
Q Consensus 289 AI~~il~-dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q 346 (835)
.++.++. + .-+++.-+.|+||+|||||..++..+......|..++|+-....+-..
T Consensus 47 ~LD~~LG~G--Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~ 103 (349)
T PRK09354 47 ALDIALGIG--GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV 103 (349)
T ss_pred HHHHHhcCC--CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHH
Confidence 4555553 1 224566788999999999999998888887888899999877766654
No 396
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=92.15 E-value=0.5 Score=48.70 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=32.4
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEccc
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 340 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPt 340 (835)
+.+.-+.+.|++|+|||..++..+......+..++++.-.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 3466788999999999999988877776777788887664
No 397
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.12 E-value=0.67 Score=54.34 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=65.4
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEE
Q 003260 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llV 410 (835)
..++||.++++.-+..+++.+... ++.+..++|+.+..++...++.+.+|+.+|+|+|. .+...+++.++++||
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~-~l~~GIDi~~v~~VI 408 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKD-----GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD-VAGRGIHIDGISHVI 408 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc-ccccCCcccCCCEEE
Confidence 468999999999998888777642 67899999999999999999999999999999994 666678889999888
Q ss_pred Ec
Q 003260 411 VD 412 (835)
Q Consensus 411 ID 412 (835)
.-
T Consensus 409 ~~ 410 (475)
T PRK01297 409 NF 410 (475)
T ss_pred Ee
Confidence 64
No 398
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=92.11 E-value=0.62 Score=55.30 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=64.8
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEE
Q 003260 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llV 410 (835)
..+++|.++++.-+..+++.+... .++++..++|+.+..++...++.+.+|+.+|+|+|. .+...+++.++++||
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~----~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-vl~rGiDip~v~~VI 441 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVV----TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-VLGRGVDLLRVRQVI 441 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhc----cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-HhhccCCcccCCEEE
Confidence 467999999999888877776542 267899999999999999999999999999999996 566678888999888
Q ss_pred E
Q 003260 411 V 411 (835)
Q Consensus 411 I 411 (835)
.
T Consensus 442 ~ 442 (518)
T PLN00206 442 I 442 (518)
T ss_pred E
Confidence 5
No 399
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.04 E-value=0.25 Score=54.90 Aligned_cols=63 Identities=21% Similarity=0.316 Sum_probs=41.6
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHH---cCCCEEEEEcccHHH
Q 003260 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV---SAGKQAMVLAPTIVL 343 (835)
Q Consensus 272 ~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l---~~g~qvlVLvPtr~L 343 (835)
..+.+.+. +++.|.+.+..+.+ .+++++++|+||||||.. +.+++..+ ....+++++-.+.+|
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~------~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVR------AHRNILVIGGTGSGKTTL-VNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHH------cCCeEEEECCCCCCHHHH-HHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 44444333 46778887766553 257899999999999955 44444432 345677877777766
No 400
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=91.94 E-value=0.44 Score=55.99 Aligned_cols=76 Identities=20% Similarity=0.081 Sum_probs=51.4
Q ss_pred HhHHHHHHHHHHhh--hcCCCCCcEEEEccCCCcccHHHHHHHH-HHHc---CCCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003260 284 PDQKKAFLDVERDL--TERETPMDRLICGDVGFGKTEVALRAIF-CVVS---AGKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 284 p~Q~~AI~~il~dl--~~~~~~~d~Ll~a~TGsGKT~val~a~l-~~l~---~g~qvlVLvPtr~LA~Q~~~~~~~~f~~ 357 (835)
|+|.-.+..++--. ....+-+.+++.-+=|.|||......++ ..+. .+.++++.++++.-|...++.+...+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 56776666655210 0112235678888999999988543333 3332 3679999999999999999999886655
Q ss_pred CC
Q 003260 358 YP 359 (835)
Q Consensus 358 ~~ 359 (835)
.|
T Consensus 81 ~~ 82 (477)
T PF03354_consen 81 SP 82 (477)
T ss_pred Ch
Confidence 43
No 401
>PF13871 Helicase_C_4: Helicase_C-like
Probab=91.91 E-value=0.41 Score=52.03 Aligned_cols=67 Identities=18% Similarity=0.340 Sum_probs=51.8
Q ss_pred HHHHHhhcCCeeEEEEcCcCCcCCCCCC--------ccEEEEecCCCCChhHHHHHhcccCCCCC-ceEEEEEecCC
Q 003260 535 ETMEKFAQGAIKILICTNIVESGLDIQN--------ANTIIVQDVQQFGLAQLYQLRGRVGRADK-EAHAYLFYPDK 602 (835)
Q Consensus 535 ~vl~~F~~g~~~ILVaT~iie~GIDIp~--------v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~-~G~ay~l~~~~ 602 (835)
...+.|.+|+.+|+|.|..+++||.+.. -+..|....| |+....+|..||+.|.|+ .+..|.+...+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~p-wsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~ 127 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELP-WSADKAIQQFGRTHRSNQVSAPEYRFLVTD 127 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCC-CCHHHHHHHhccccccccccCCEEEEeecC
Confidence 4567899999999999999999998862 1234556666 799999999999999995 35556655443
No 402
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=91.90 E-value=0.82 Score=50.18 Aligned_cols=54 Identities=22% Similarity=0.173 Sum_probs=32.8
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHH--cC-C----CEEEEEcccHHHHHHHHHHHHHhh
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVV--SA-G----KQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l--~~-g----~qvlVLvPtr~LA~Q~~~~~~~~f 355 (835)
+.-+.+|+|+||.|||.+.-...-..- .+ + +-+++-+|...=....|..+-..+
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 345789999999999987533222111 01 1 234555677666666777766554
No 403
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.88 E-value=0.19 Score=52.70 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=38.2
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcC-CCEEEEEcccHHHHHHHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
+++..++|.|++|+|||..++..+...+.+ |..++++.- .+-..++.+.+..
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~-ee~~~~l~~~~~s 69 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF-EEPPEELIENMKS 69 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES-SS-HHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe-cCCHHHHHHHHHH
Confidence 457789999999999999999888888888 888888874 3334565555553
No 404
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=91.87 E-value=0.26 Score=61.01 Aligned_cols=82 Identities=22% Similarity=0.389 Sum_probs=63.3
Q ss_pred hcCCeEEEEecCccChHHHHHHHHhhC-----CCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcC-CcCCC-CC-
Q 003260 490 DRGGQVFYVLPRIKGLEEPMDFLQQAF-----PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIV-ESGLD-IQ- 561 (835)
Q Consensus 490 ~~ggqvlVf~n~v~~~e~l~~~L~~~~-----p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~ii-e~GID-Ip- 561 (835)
.+|.++++++|+..-+.++++.|+... ....+. +||.|+..+++.++++|.+|..+|||+|+.. ..-.| ++
T Consensus 123 ~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~ 201 (1187)
T COG1110 123 KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK 201 (1187)
T ss_pred hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc
Confidence 457899999999888888888887764 233444 9999999999999999999999999999854 22222 22
Q ss_pred -CccEEEEecCC
Q 003260 562 -NANTIIVQDVQ 572 (835)
Q Consensus 562 -~v~~VIi~d~p 572 (835)
+.+.|++.|.+
T Consensus 202 ~kFdfifVDDVD 213 (1187)
T COG1110 202 LKFDFIFVDDVD 213 (1187)
T ss_pred cCCCEEEEccHH
Confidence 36678877765
No 405
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=91.72 E-value=0.49 Score=57.28 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=67.2
Q ss_pred cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccE
Q 003260 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 408 (835)
Q Consensus 329 ~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~l 408 (835)
..+.+++|.++|+.-+.+++..+.+. |+.+..++++.+..++....+.+..|+.+|+|+|.. +...+++.++++
T Consensus 234 ~~~~~~IIFc~tr~~~e~la~~L~~~-----g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a-~~~GIDip~V~~ 307 (607)
T PRK11057 234 QRGKSGIIYCNSRAKVEDTAARLQSR-----GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVA-FGMGINKPNVRF 307 (607)
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEech-hhccCCCCCcCE
Confidence 35678999999999999998888763 689999999999999999999999999999999974 566788889998
Q ss_pred EEE
Q 003260 409 LVV 411 (835)
Q Consensus 409 lVI 411 (835)
||.
T Consensus 308 VI~ 310 (607)
T PRK11057 308 VVH 310 (607)
T ss_pred EEE
Confidence 884
No 406
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.67 E-value=0.48 Score=57.60 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=66.2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
...+++|.|+|+.-+.++++.+.+. |+.+..+++..+..++...+..+.+|+++|+|+|. .+...+++.++++|
T Consensus 244 ~~~~~IVF~~tk~~a~~l~~~L~~~-----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATd-v~arGIDip~V~~V 317 (629)
T PRK11634 244 DFDAAIIFVRTKNATLEVAEALERN-----GYNSAALNGDMNQALREQTLERLKDGRLDILIATD-VAARGLDVERISLV 317 (629)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHhC-----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcc-hHhcCCCcccCCEE
Confidence 3468999999999999988888763 67899999999999999999999999999999996 56667888999998
Q ss_pred EE
Q 003260 410 VV 411 (835)
Q Consensus 410 VI 411 (835)
|.
T Consensus 318 I~ 319 (629)
T PRK11634 318 VN 319 (629)
T ss_pred EE
Confidence 85
No 407
>PRK06921 hypothetical protein; Provisional
Probab=91.67 E-value=2.1 Score=46.43 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=30.6
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcC-CCEEEEEcccHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~-g~qvlVLvPtr~LA~Q~ 347 (835)
.+..+++.|++|+|||-.+...+-..... +..|+++.. ..+..+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~-~~l~~~l 161 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF-VEGFGDL 161 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH-HHHHHHH
Confidence 35679999999999998765444444555 677776554 4554444
No 408
>CHL00176 ftsH cell division protein; Validated
Probab=91.61 E-value=2.6 Score=51.29 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=17.0
Q ss_pred CCCcEEEEccCCCcccHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val 321 (835)
.++.+|+.||+|+|||..+-
T Consensus 215 ~p~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 36789999999999998763
No 409
>PHA02244 ATPase-like protein
Probab=91.55 E-value=2 Score=48.71 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=24.1
Q ss_pred CHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHH
Q 003260 283 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 283 tp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a 323 (835)
.|.+......+.+.+ ..+.+++|.||||+|||..+...
T Consensus 102 sp~~~~~~~ri~r~l---~~~~PVLL~GppGtGKTtLA~aL 139 (383)
T PHA02244 102 NPTFHYETADIAKIV---NANIPVFLKGGAGSGKNHIAEQI 139 (383)
T ss_pred CHHHHHHHHHHHHHH---hcCCCEEEECCCCCCHHHHHHHH
Confidence 344433434444433 23578999999999999876433
No 410
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.52 E-value=0.62 Score=58.58 Aligned_cols=54 Identities=26% Similarity=0.378 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHhhhc-------CCCCC-cEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcc
Q 003260 285 DQKKAFLDVERDLTE-------RETPM-DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~-------~~~~~-d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvP 339 (835)
.|..|+..+.+.+.. ..+|. .++++||||+|||..+-..+-. +..+...++...
T Consensus 570 GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~-l~~~~~~~~~~d 631 (852)
T TIGR03345 570 GQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL-LYGGEQNLITIN 631 (852)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH-HhCCCcceEEEe
Confidence 577788777665421 22343 3799999999999987544333 333333344333
No 411
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.51 E-value=1.2 Score=45.25 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=30.3
Q ss_pred cEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcc
Q 003260 305 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvP 339 (835)
-+.+..++|-|||.+++-.++.++..|.+|+++.=
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQF 41 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQF 41 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 36777889999999999999999999999988843
No 412
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.44 E-value=0.28 Score=54.85 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=32.0
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLA 344 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA 344 (835)
+.+++|+|+||||||.. +.+++..+....+++.+--+.+|.
T Consensus 160 ~~nili~G~tgSGKTTl-l~aL~~~ip~~~ri~tiEd~~El~ 200 (332)
T PRK13900 160 KKNIIISGGTSTGKTTF-TNAALREIPAIERLITVEDAREIV 200 (332)
T ss_pred CCcEEEECCCCCCHHHH-HHHHHhhCCCCCeEEEecCCCccc
Confidence 57899999999999975 466677777777888776666654
No 413
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=91.38 E-value=1.2 Score=53.58 Aligned_cols=158 Identities=16% Similarity=0.153 Sum_probs=92.3
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHH--cCCCEEEEEcccHHHHHHHHHHHHHhhcCC-CCcEEEEecCCCCHHHHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKY-PDIKVGLLSRFQSKAEKEEHLD 380 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l--~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~-~gi~V~~l~g~~s~~e~~~~l~ 380 (835)
+-.+++.|==.|||+.....+...+ ..|.++++.+|.+..++..++++..++..+ ++-.+....| . .+.-
T Consensus 255 k~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e------~I~i 327 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-E------TISF 327 (738)
T ss_pred cceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-c------EEEE
Confidence 5578899999999997542222222 368999999999999999999999876643 2222222222 0 0101
Q ss_pred hhhcCC-cceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhhh--cCCceEEEeecCCChhhHHHHHhcCCCcc
Q 003260 381 MIKHGH-LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF--KISVDVLTLSATPIPRTLYLALTGFRDAS 457 (835)
Q Consensus 381 ~l~~G~-~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l--~~~~~vL~lSATp~p~tl~~~~~g~~d~s 457 (835)
...+|. ..|.+++-. =.+...=.+++++||||||.........+.-+ ..+.++|.+|-|-.....-.++..+++..
T Consensus 328 ~f~nG~kstI~FaSar-ntNsiRGqtfDLLIVDEAqFIk~~al~~ilp~l~~~n~k~I~ISS~Ns~~~sTSFL~nLk~a~ 406 (738)
T PHA03368 328 SFPDGSRSTIVFASSH-NTNGIRGQDFNLLFVDEANFIRPDAVQTIMGFLNQTNCKIIFVSSTNTGKASTSFLYNLKGAA 406 (738)
T ss_pred EecCCCccEEEEEecc-CCCCccCCcccEEEEechhhCCHHHHHHHHHHHhccCccEEEEecCCCCccchHHHHhhcCch
Confidence 122232 245554210 00012224789999999999876665554322 34889999998865543333343333322
Q ss_pred eecCCCCCccceeEEecc
Q 003260 458 LISTPPPERLPIKTHLSA 475 (835)
Q Consensus 458 ~I~~~p~~r~~v~~~~~~ 475 (835)
.....|.+|+..
T Consensus 407 ------~~lLNVVsYvCd 418 (738)
T PHA03368 407 ------DELLNVVTYICD 418 (738)
T ss_pred ------hhheeeEEEECh
Confidence 234455556553
No 414
>PHA02558 uvsW UvsW helicase; Provisional
Probab=91.28 E-value=0.71 Score=54.58 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=66.3
Q ss_pred cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccE
Q 003260 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 408 (835)
Q Consensus 329 ~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~l 408 (835)
..+.+++|++.++.=+..+++.+.+ . +.++..++|..+..++....+...+|...|+|+|-+.+...+++.++++
T Consensus 342 ~~~~~~lV~~~~~~h~~~L~~~L~~----~-g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~ 416 (501)
T PHA02558 342 KKGENTFVMFKYVEHGKPLYEMLKK----V-YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHH 416 (501)
T ss_pred hcCCCEEEEEEEHHHHHHHHHHHHH----c-CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccE
Confidence 4577899999888766666666654 2 6899999999999999988888888888899999999999999999999
Q ss_pred EEEc
Q 003260 409 LVVD 412 (835)
Q Consensus 409 lVID 412 (835)
||+.
T Consensus 417 vIl~ 420 (501)
T PHA02558 417 VIFA 420 (501)
T ss_pred EEEe
Confidence 9975
No 415
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.24 E-value=0.36 Score=56.12 Aligned_cols=43 Identities=26% Similarity=0.262 Sum_probs=29.8
Q ss_pred CCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC
Q 003260 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330 (835)
Q Consensus 282 ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~ 330 (835)
.+|.|...+..+++ .+.| =+|+.||||||||... ..++..+..
T Consensus 242 ~~~~~~~~~~~~~~----~p~G-liLvTGPTGSGKTTTL-Y~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLN----RPQG-LILVTGPTGSGKTTTL-YAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHh----CCCe-EEEEeCCCCCCHHHHH-HHHHHHhcC
Confidence 36888888777764 3444 4789999999999873 444444443
No 416
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=91.19 E-value=0.71 Score=53.47 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=62.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEE
Q 003260 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llV 410 (835)
.+.++|.|.++.-|.-++..+.+. |.++..+||+.+..+++..+..++.|..+|+|+|.-.= +.++..|+++||
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~-----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAg-RGIDIpnVSlVi 590 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKA-----GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAG-RGIDIPNVSLVI 590 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhc-----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccc-cCCCCCccceee
Confidence 578999999998888777777652 78999999999999999999999999999999997433 346777888776
No 417
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.18 E-value=1.7 Score=48.88 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=32.7
Q ss_pred CHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc
Q 003260 283 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS 329 (835)
Q Consensus 283 tp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~ 329 (835)
.|+|...+..+..- .+.-+.-.|+.||.|.||+..+...+-..+.
T Consensus 3 yPW~~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC 47 (342)
T PRK06964 3 YPWQTDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLC 47 (342)
T ss_pred CcccHHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 57888888887652 2344567889999999999988665544443
No 418
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.15 E-value=0.47 Score=51.19 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=37.5
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEE
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVL 337 (835)
|.+||..++.+..++..+. .+.++++.||+|+|||..+...+. .. |..++.+
T Consensus 1 ~~~t~~~~~l~~~~l~~l~---~g~~vLL~G~~GtGKT~lA~~la~-~l--g~~~~~i 52 (262)
T TIGR02640 1 FIETDAVKRVTSRALRYLK---SGYPVHLRGPAGTGKTTLAMHVAR-KR--DRPVMLI 52 (262)
T ss_pred CCCCHHHHHHHHHHHHHHh---cCCeEEEEcCCCCCHHHHHHHHHH-Hh--CCCEEEE
Confidence 4578888888888887663 357899999999999998754442 22 4445544
No 419
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.07 E-value=0.25 Score=54.79 Aligned_cols=60 Identities=22% Similarity=0.245 Sum_probs=45.4
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHH
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~ 347 (835)
..++.|...+..+.+. ..++|++|.||||||.. +.++...+...-+++++--|.+|..++
T Consensus 157 t~~~~~a~~L~~av~~------r~NILisGGTGSGKTTl-LNal~~~i~~~eRvItiEDtaELql~~ 216 (355)
T COG4962 157 TMIRRAAKFLRRAVGI------RCNILISGGTGSGKTTL-LNALSGFIDSDERVITIEDTAELQLAH 216 (355)
T ss_pred CcCHHHHHHHHHHHhh------ceeEEEeCCCCCCHHHH-HHHHHhcCCCcccEEEEeehhhhccCC
Confidence 6789999888777652 36899999999999975 334444455566899999998886553
No 420
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.87 E-value=0.31 Score=54.75 Aligned_cols=41 Identities=22% Similarity=0.518 Sum_probs=31.7
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLA 344 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA 344 (835)
+.+++|+|+||||||.. +.+++..+....+++.+-.+.+|.
T Consensus 162 ~~nilI~G~tGSGKTTl-l~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTM-SKTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred CCeEEEECCCCccHHHH-HHHHHcccCCCCCEEEECCCcccc
Confidence 57899999999999975 455566666666788888887764
No 421
>PRK09694 helicase Cas3; Provisional
Probab=90.72 E-value=1.4 Score=55.48 Aligned_cols=91 Identities=14% Similarity=0.259 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHH----HHHHhh-hcCC---cceee
Q 003260 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKE----EHLDMI-KHGH---LNIIV 391 (835)
Q Consensus 320 al~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~----~~l~~l-~~G~---~dIIV 391 (835)
.+..+...+..|++++|+++|+.-|++.++.+++.+.. +..+.++++.....++. +.++.+ ++|+ ..|+|
T Consensus 549 ~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~--~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 549 LLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNT--QVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCC--CceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 34445555677899999999999999999999875432 36799999987777663 334444 4454 36999
Q ss_pred ccHHHhhcccccCCccEEEEcCc
Q 003260 392 GTHSLLGSRVVYNNLGLLVVDEE 414 (835)
Q Consensus 392 gT~~~L~~~l~~~~l~llVIDEa 414 (835)
+| +.+...+++ +++++|.|-+
T Consensus 627 aT-QViE~GLDI-d~DvlItdla 647 (878)
T PRK09694 627 AT-QVVEQSLDL-DFDWLITQLC 647 (878)
T ss_pred EC-cchhheeec-CCCeEEECCC
Confidence 99 555555666 5788998854
No 422
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.60 E-value=2.8 Score=49.24 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=61.1
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHH-HcCC-CEEEEEc--ccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCV-VSAG-KQAMVLA--PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~-l~~g-~qvlVLv--Ptr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~ 378 (835)
+.-++++||||+|||+.....+... ...| .+|.++. +.+.-+.+....+.+.+ |+.+...... .+ .
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~Aeil----GVpv~~~~~~---~D---l 325 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKIL----GVPVHAVKDA---AD---L 325 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHh----CCCeeccCCc---hh---H
Confidence 4567899999999998865444333 3444 3555433 22444444444444433 3333222111 01 0
Q ss_pred HHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchh--hHHHHhhhc----CCceEEEeecCCChhhHHHHHhc
Q 003260 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVK--QKEKIASFK----ISVDVLTLSATPIPRTLYLALTG 452 (835)
Q Consensus 379 l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~--~~e~l~~l~----~~~~vL~lSATp~p~tl~~~~~g 452 (835)
......+.+.++++||.+=+.-.. ..+.+..+. +.-.++.++||.....+......
T Consensus 326 ------------------~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~ 387 (484)
T PRK06995 326 ------------------RLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQA 387 (484)
T ss_pred ------------------HHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHH
Confidence 001123456678888885432111 111222221 22257889999877666544433
No 423
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=90.57 E-value=0.16 Score=61.27 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=47.0
Q ss_pred hcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhc---CCeeEEEEcCcCCcC
Q 003260 490 DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQ---GAIKILICTNIVESG 557 (835)
Q Consensus 490 ~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~---g~~~ILVaT~iie~G 557 (835)
+.|.+|++|..-+..++-+.+.+... + ....+.|..+..+|+..+..|.. ...-.|+||...+.|
T Consensus 629 ~~ghrvl~~~q~~~~ldlled~~~~~--~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 629 SSGHRVLIFSQMIHMLDLLEDYLTYE--G-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hcchhhHHHHHHHHHHHHhHHHHhcc--C-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 34566777666666666555665554 3 66788999999999999999983 246688999887765
No 424
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.55 E-value=2.5 Score=52.09 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=58.7
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHH-HcCC-CEEEEEcc--cHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCV-VSAG-KQAMVLAP--TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~-l~~g-~qvlVLvP--tr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~ 378 (835)
+.-++++||||+|||..+...+... ...| ++|.++.- .+.=+......+.+.+ ++.+.... +..+-...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~----gvpv~~~~---~~~~l~~a 257 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRIL----GVPVHAVK---DAADLRFA 257 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhC----CCCccccC---CHHHHHHH
Confidence 4457899999999988864444333 3444 46655443 2332333334444322 33332221 22222222
Q ss_pred HHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccch--hhHHHHhhh----cCCceEEEeecCCChhhHHHH
Q 003260 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV--KQKEKIASF----KISVDVLTLSATPIPRTLYLA 449 (835)
Q Consensus 379 l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~--~~~e~l~~l----~~~~~vL~lSATp~p~tl~~~ 449 (835)
+. .+.+.++|+||=+=+... ...+.+..+ .+.-.++.+|||...+.+...
T Consensus 258 l~---------------------~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i 313 (767)
T PRK14723 258 LA---------------------ALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV 313 (767)
T ss_pred HH---------------------HhcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH
Confidence 21 234556777776654321 112222221 234457888999766665433
No 425
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=90.52 E-value=0.9 Score=56.32 Aligned_cols=88 Identities=14% Similarity=0.093 Sum_probs=72.0
Q ss_pred HHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCC---CCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccc
Q 003260 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY---PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV 402 (835)
Q Consensus 326 ~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~---~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~ 402 (835)
..+..+.+++|.+.|+..+..++..+++.+... .+.++..++++.+..+|....+.+++|+.+++|+|. .|...++
T Consensus 266 ~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd-~lerGID 344 (742)
T TIGR03817 266 DLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTN-ALELGVD 344 (742)
T ss_pred HHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECc-hHhccCC
Confidence 334567899999999999999998887654321 246788999999999999999999999999999995 4555688
Q ss_pred cCCccEEEEcCc
Q 003260 403 YNNLGLLVVDEE 414 (835)
Q Consensus 403 ~~~l~llVIDEa 414 (835)
+.++++||.-..
T Consensus 345 I~~vd~VI~~~~ 356 (742)
T TIGR03817 345 ISGLDAVVIAGF 356 (742)
T ss_pred cccccEEEEeCC
Confidence 889998887654
No 426
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=90.51 E-value=1.4 Score=52.12 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=17.4
Q ss_pred CCCCcEEEEccCCCcccHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val 321 (835)
..++.+|+.||+|+|||..+-
T Consensus 214 ~~p~GILLyGPPGTGKT~LAK 234 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAK 234 (512)
T ss_pred CCCcceEEECCCCCcHHHHHH
Confidence 346789999999999998753
No 427
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.48 E-value=1.5 Score=55.22 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l 325 (835)
|..-+..+..-+. .....+.++.||+|+|||.++-..+.
T Consensus 178 r~~ei~~~~~~l~-r~~~~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 178 RDEEIRRTIQVLS-RRTKNNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred cHHHHHHHHHHHh-cCCCCceEEEcCCCCCHHHHHHHHHH
Confidence 4444555555442 34557899999999999988754433
No 428
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=90.36 E-value=3.5 Score=48.71 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=17.5
Q ss_pred CCCCcEEEEccCCCcccHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val 321 (835)
..++.+|+.||+|+|||..+-
T Consensus 86 ~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHH
Confidence 446789999999999998753
No 429
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.28 E-value=1.4 Score=54.69 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=19.5
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~ 326 (835)
...+.|+.||+|+|||.++-..+..
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999986544433
No 430
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=90.18 E-value=1.8 Score=48.43 Aligned_cols=85 Identities=14% Similarity=0.318 Sum_probs=64.3
Q ss_pred HHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHH----HHhhhcCCcceeeccHHHhhc
Q 003260 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH----LDMIKHGHLNIIVGTHSLLGS 399 (835)
Q Consensus 324 ~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~----l~~l~~G~~dIIVgT~~~L~~ 399 (835)
++.....+.+++|+++|+.-+..+++.+++.. ++..+..++|..+..++... +..+.+|+..|+|+|. .+..
T Consensus 215 l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~---~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~-~~~~ 290 (358)
T TIGR01587 215 LLEFIKKGGKIAIIVNTVDRAQEFYQQLKENA---PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ-VIEA 290 (358)
T ss_pred HHHHhhCCCeEEEEECCHHHHHHHHHHHHhhc---CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc-chhc
Confidence 34555668899999999999999998887642 23579999999888777653 6778889999999997 5555
Q ss_pred ccccCCccEEEEcC
Q 003260 400 RVVYNNLGLLVVDE 413 (835)
Q Consensus 400 ~l~~~~l~llVIDE 413 (835)
.+++ +++++|.+.
T Consensus 291 GiDi-~~~~vi~~~ 303 (358)
T TIGR01587 291 SLDI-SADVMITEL 303 (358)
T ss_pred eecc-CCCEEEEcC
Confidence 5666 366666653
No 431
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=90.18 E-value=0.45 Score=51.96 Aligned_cols=39 Identities=21% Similarity=0.459 Sum_probs=25.5
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHH--HcC-CCEEEEEcccHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCV--VSA-GKQAMVLAPTIV 342 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~--l~~-g~qvlVLvPtr~ 342 (835)
|--.+|.|||||||+- .++.++.. +.. .-.|++++|++-
T Consensus 87 P~I~~VYGPTG~GKSq-LlRNLis~~lI~P~PETVfFItP~~~ 128 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKSQ-LLRNLISCQLIQPPPETVFFITPQKD 128 (369)
T ss_pred ceEEEEECCCCCCHHH-HHHHhhhcCcccCCCCceEEECCCCC
Confidence 4446889999999984 44544322 222 247899999763
No 432
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=90.00 E-value=1 Score=45.43 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=16.4
Q ss_pred CCCCcEEEEccCCCcccHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~va 320 (835)
..+..++|+|++|+||+.+|
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA 39 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLA 39 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHH
Confidence 44678999999999999875
No 433
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=89.95 E-value=2.8 Score=48.57 Aligned_cols=146 Identities=19% Similarity=0.091 Sum_probs=78.8
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc--CCCEEEEEcccHHHHHHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~--~g~qvlVLvPtr~LA~Q~ 347 (835)
+.+.++..-. .+-..|.+|.-. .+.+.- .|.|=.|||||++..+-+..... .+-++++.+-|+.|+.++
T Consensus 152 ~l~~ieskIa-nfD~~Q~kaa~~-------~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~ 222 (660)
T COG3972 152 LLDTIESKIA-NFDTDQTKAAFQ-------SGFGKQ-RIRGLAGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTM 222 (660)
T ss_pred HHHHHHHHHh-cccchhheeeee-------cCCchh-hhhcccCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHH
Confidence 5666654432 455678777322 222333 67899999999986544433323 356999999999999998
Q ss_pred HHHHHHhhcCC----CC---cEEEEecCCCCHHHHHHHHHhhhcCCcceeecc---------HHHhhcccccCCccEEEE
Q 003260 348 FDVVSERFSKY----PD---IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT---------HSLLGSRVVYNNLGLLVV 411 (835)
Q Consensus 348 ~~~~~~~f~~~----~g---i~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT---------~~~L~~~l~~~~l~llVI 411 (835)
...+.+.+-.+ |+ +-+..-.|+.+..--....... .+...+-++- -+++.+.-..+-+++|.|
T Consensus 223 r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~-~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilI 301 (660)
T COG3972 223 RTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYI-CHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILI 301 (660)
T ss_pred HHHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHH-hcccccccCCCCcchHHHHHHHHHhhhccccccEEEe
Confidence 88777644221 21 1222222332221111111111 1212222221 123333334567899999
Q ss_pred cCccccchhhHHHH
Q 003260 412 DEEQRFGVKQKEKI 425 (835)
Q Consensus 412 DEaHr~g~~~~e~l 425 (835)
||.|.|-....+..
T Consensus 302 DE~QDFP~~F~~Lc 315 (660)
T COG3972 302 DESQDFPQSFIDLC 315 (660)
T ss_pred cccccCCHHHHHHH
Confidence 99999855444433
No 434
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=89.72 E-value=2.5 Score=48.37 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=17.8
Q ss_pred CCCCcEEEEccCCCcccHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~ 322 (835)
..++.+|++||+|+|||..+-.
T Consensus 163 ~~p~gvLL~GppGtGKT~lAka 184 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKA 184 (389)
T ss_pred CCCCceEEECCCCCChHHHHHH
Confidence 3467799999999999987633
No 435
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=89.63 E-value=1.8 Score=49.55 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=20.6
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHc
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVS 329 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~ 329 (835)
..++.++|+||+|+|||..+.. +...+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~-i~~~I~ 193 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQK-IAQAIT 193 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHH-HHHhhc
Confidence 5678899999999999976433 444433
No 436
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=89.52 E-value=3.6 Score=48.50 Aligned_cols=146 Identities=18% Similarity=0.156 Sum_probs=85.9
Q ss_pred HhCCCCCCHhHHHHHHHHHHhhhcCCCC----CcEEEEccCCCcccHHHH-HHHHHH---HcCCCEEEEEcccHHHHHHH
Q 003260 276 AQFPYEPTPDQKKAFLDVERDLTERETP----MDRLICGDVGFGKTEVAL-RAIFCV---VSAGKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 276 ~~f~~~ptp~Q~~AI~~il~dl~~~~~~----~d~Ll~a~TGsGKT~val-~a~l~~---l~~g~qvlVLvPtr~LA~Q~ 347 (835)
..+|+++-|+|.-.+..+.--. ..+++ ...+|..|-+-|||..+. +..... ...+..+.|++|+.+-|.+.
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~-~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~ 134 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFY-DKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANS 134 (546)
T ss_pred CCCccccchHHHHHHHHHhcee-ecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHh
Confidence 5678899999999998887322 22222 356889999999987753 221111 14578899999999999988
Q ss_pred HHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhh----------cccccCCccEEEEcCcccc
Q 003260 348 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG----------SRVVYNNLGLLVVDEEQRF 417 (835)
Q Consensus 348 ~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~----------~~l~~~~l~llVIDEaHr~ 417 (835)
+..++......+++.. +.+-+.+-...++.... +...=.+..+.|+||.|.|
T Consensus 135 F~~ar~mv~~~~~l~~------------------~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f 196 (546)
T COG4626 135 FNPARDMVKRDDDLRD------------------LCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLF 196 (546)
T ss_pred hHHHHHHHHhCcchhh------------------hhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhh
Confidence 8887764433321110 00011122222222111 1122246689999999999
Q ss_pred chhhHHHHhh------hcCCceEEEeecCC
Q 003260 418 GVKQKEKIAS------FKISVDVLTLSATP 441 (835)
Q Consensus 418 g~~~~e~l~~------l~~~~~vL~lSATp 441 (835)
+... +.+.. .+++..++..|--.
T Consensus 197 ~~~~-~~~~~~~~g~~ar~~~l~~~ITT~g 225 (546)
T COG4626 197 GKQE-DMYSEAKGGLGARPEGLVVYITTSG 225 (546)
T ss_pred cCHH-HHHHHHHhhhccCcCceEEEEecCC
Confidence 8753 22222 24566676666543
No 437
>PHA00350 putative assembly protein
Probab=89.50 E-value=0.8 Score=52.32 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=24.8
Q ss_pred cEEEEccCCCcccHHHHH-HHHHHHcCCCEEE
Q 003260 305 DRLICGDVGFGKTEVALR-AIFCVVSAGKQAM 335 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~-a~l~~l~~g~qvl 335 (835)
-.++.|..|||||.-++. .++.++..|+.|+
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~palk~GR~V~ 34 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDGRKVI 34 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHHHCCCEEE
Confidence 468999999999999876 5777788887553
No 438
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.44 E-value=0.68 Score=47.15 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=34.9
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcc
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvP 339 (835)
..++.|...+....+ .+..++++|+||||||..+ .++...+.....++.+--
T Consensus 9 ~~~~~~~~~l~~~v~------~g~~i~I~G~tGSGKTTll-~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 9 TFSPLQAAYLWLAVE------ARKNILISGGTGSGKTTLL-NALLAFIPPDERIITIED 60 (186)
T ss_pred CCCHHHHHHHHHHHh------CCCEEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEECC
Confidence 356778888776654 2578999999999999764 444444444445555543
No 439
>PRK11823 DNA repair protein RadA; Provisional
Probab=89.42 E-value=1.6 Score=50.95 Aligned_cols=50 Identities=24% Similarity=0.221 Sum_probs=37.0
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~ 352 (835)
.+.-+++.|++|+|||..++..+......+.+++|+.-. +-..|+..+..
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E-es~~qi~~ra~ 128 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE-ESASQIKLRAE 128 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-ccHHHHHHHHH
Confidence 456778999999999998877776665667888888754 44556666554
No 440
>PRK05973 replicative DNA helicase; Provisional
Probab=89.35 E-value=0.48 Score=50.47 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=39.9
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
+++.-++|.|++|+|||..++..+.....+|.+++|+.-.-. ..|+.+++..
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes-~~~i~~R~~s 113 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT-EQDVRDRLRA 113 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHH
Confidence 345678899999999999998888877778888888864433 4566666654
No 441
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=89.33 E-value=1.1 Score=54.22 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=64.4
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEE
Q 003260 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llV 410 (835)
+.+++|.++++..+.++++.+... |+.+..++++.+..++....+...+|+++|+|+|. .+...+++.++++||
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~-----g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~-a~~~GID~p~v~~VI 297 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQ-----GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATN-AFGMGIDKPNVRFVI 297 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEec-hhhccCcCCCCCEEE
Confidence 578899999999999998888752 68899999999999999999999999999999996 455567788888877
Q ss_pred E
Q 003260 411 V 411 (835)
Q Consensus 411 I 411 (835)
.
T Consensus 298 ~ 298 (591)
T TIGR01389 298 H 298 (591)
T ss_pred E
Confidence 5
No 442
>PRK04328 hypothetical protein; Provisional
Probab=89.24 E-value=0.6 Score=50.01 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=38.5
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
+.+.-++|.|++|+|||..++..+...+..|..++++. +.+-..++.+.+..
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~ 72 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQ 72 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHH
Confidence 45678899999999999998888888777888888876 33344455555543
No 443
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=89.21 E-value=1.9 Score=44.78 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=30.9
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEE
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVL 337 (835)
+.+.-++|.|++|+|||..++..+......+..++++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi 53 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYI 53 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3456688999999999999988887777778888888
No 444
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=89.03 E-value=3.3 Score=42.02 Aligned_cols=130 Identities=18% Similarity=0.260 Sum_probs=57.2
Q ss_pred EEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecC-CCCH-HHHHHHHHhhh
Q 003260 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR-FQSK-AEKEEHLDMIK 383 (835)
Q Consensus 306 ~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g-~~s~-~e~~~~l~~l~ 383 (835)
+.|.-..|=|||.+|+=.++.++..|.+|+++.=.+-- -.+.+... +..++++.+..... +... .+.........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~--~~~GE~~~-l~~l~~~~~~~~g~~f~~~~~~~~~~~~~~~ 82 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGG--RYSGELKA-LKKLPNVEIERFGKGFVWRMNEEEEDRAAAR 82 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--S--S--HHHHH-HGGGT--EEEE--TT----GGGHHHHHHHHH
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCC--CCcCHHHH-HHhCCeEEEEEcCCcccccCCCcHHHHHHHH
Confidence 45555668999999999999999999999999866551 11222222 33444444432222 1111 11111111111
Q ss_pred cCCcceeeccHHHhhcccccCCccEEEEcCccc---cchhh----HHHHhhhcCCceEEEeecCCChhhHH
Q 003260 384 HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQR---FGVKQ----KEKIASFKISVDVLTLSATPIPRTLY 447 (835)
Q Consensus 384 ~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr---~g~~~----~e~l~~l~~~~~vL~lSATp~p~tl~ 447 (835)
++ -....+.+.-..+++||+||+=. +|.-. .+.|...+....+| +|+.-.|..+.
T Consensus 83 ~~--------~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evV-lTGR~~~~~l~ 144 (172)
T PF02572_consen 83 EG--------LEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVV-LTGRNAPEELI 144 (172)
T ss_dssp HH--------HHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEE-EE-SS--HHHH
T ss_pred HH--------HHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEE-EECCCCCHHHH
Confidence 11 01111223346799999999874 23322 23344334455554 66665454443
No 445
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=88.83 E-value=1.3 Score=50.32 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=35.7
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~ 352 (835)
.+.-+++.|++|+|||..++..+......+.+++|+.-.. -..|+..+..
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE-s~~qi~~Ra~ 130 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE-SPEQIKLRAD 130 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc-CHHHHHHHHH
Confidence 3566789999999999988777766666667888886543 3456555544
No 446
>CHL00095 clpC Clp protease ATP binding subunit
Probab=88.81 E-value=1.2 Score=56.08 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=29.5
Q ss_pred HhHHHHHHHHHHhhhc-------CCCCC-cEEEEccCCCcccHHHHHHHHH
Q 003260 284 PDQKKAFLDVERDLTE-------RETPM-DRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 284 p~Q~~AI~~il~dl~~-------~~~~~-d~Ll~a~TGsGKT~val~a~l~ 326 (835)
..|..|+..+...+.. ..+|. .++++||||+|||..+-..+-.
T Consensus 512 ~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~ 562 (821)
T CHL00095 512 IGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY 562 (821)
T ss_pred cChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 3688888888665431 22232 4789999999999987555433
No 447
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=88.80 E-value=0.81 Score=49.53 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=35.1
Q ss_pred CCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc-CCCEEEEEcccHH
Q 003260 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIV 342 (835)
Q Consensus 282 ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~-~g~qvlVLvPtr~ 342 (835)
+.+.|.+.+..++.. ....++++|+||||||... .+++..+. .+..++.+--..+
T Consensus 64 ~~~~~~~~l~~~~~~-----~~GlilisG~tGSGKTT~l-~all~~i~~~~~~iitiEdp~E 119 (264)
T cd01129 64 LKPENLEIFRKLLEK-----PHGIILVTGPTGSGKTTTL-YSALSELNTPEKNIITVEDPVE 119 (264)
T ss_pred CCHHHHHHHHHHHhc-----CCCEEEEECCCCCcHHHHH-HHHHhhhCCCCCeEEEECCCce
Confidence 467788887666531 1346899999999999764 44444443 3456666654444
No 448
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=88.77 E-value=2.5 Score=46.00 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.9
Q ss_pred CcEEEEccCCCcccHHH
Q 003260 304 MDRLICGDVGFGKTEVA 320 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~va 320 (835)
.++++.||+|+|||..+
T Consensus 112 ~~~~i~g~~g~GKttl~ 128 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLL 128 (270)
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 68999999999999753
No 449
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=88.70 E-value=1.8 Score=48.12 Aligned_cols=50 Identities=12% Similarity=0.081 Sum_probs=33.0
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc------CCCEEEEEccc
Q 003260 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS------AGKQAMVLAPT 340 (835)
Q Consensus 289 AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~------~g~qvlVLvPt 340 (835)
.++.++.+ .-+.+.-..|+|++|+|||..++..+..... .+..|+|+--.
T Consensus 84 ~LD~lLgG--Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE 139 (313)
T TIGR02238 84 ALDGILGG--GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTE 139 (313)
T ss_pred HHHHHhCC--CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcC
Confidence 44555542 1244566789999999999998776654432 24688888643
No 450
>PF12846 AAA_10: AAA-like domain
Probab=88.69 E-value=0.57 Score=50.42 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=33.4
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 345 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~ 345 (835)
.+++++|+||||||..+...+...+..|..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHHH
Confidence 468999999999998887666677778888888877655444
No 451
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=88.61 E-value=1.4 Score=48.12 Aligned_cols=44 Identities=23% Similarity=0.212 Sum_probs=34.1
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 346 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q 346 (835)
+.=+=|+||-|||||.+++.++..+...+..++|+--...|-.+
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~ 103 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPE 103 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHH
Confidence 33344689999999999999999888888888888655544433
No 452
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=88.52 E-value=1.8 Score=52.17 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=25.8
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHHc--CCCEEEEEcccHHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l~--~g~qvlVLvPtr~LA~Q~ 347 (835)
..++|+|++|+|||-.+...+..... .+.+|+++. ...++.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-aeef~~el 359 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-SEEFTNEF 359 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-HHHHHHHH
Confidence 34899999999999764333322222 356666554 34455443
No 453
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.42 E-value=0.54 Score=50.64 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=30.5
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCC-CEEEEEcccHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLA 344 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g-~qvlVLvPtr~LA 344 (835)
+.+++++|+||||||... .+++..+... .+++++-.+.++-
T Consensus 127 ~~~ili~G~tGSGKTT~l-~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL-NALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp TEEEEEEESTTSSHHHHH-HHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ceEEEEECCCccccchHH-HHHhhhccccccceEEecccccee
Confidence 578999999999999765 5555666666 7888888776653
No 454
>PRK13531 regulatory ATPase RavA; Provisional
Probab=88.36 E-value=1.7 Score=50.82 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a 323 (835)
|.++|..++..+. .+.++|+.||+|+|||..+-..
T Consensus 25 re~vI~lll~aal---ag~hVLL~GpPGTGKT~LAraL 59 (498)
T PRK13531 25 RSHAIRLCLLAAL---SGESVFLLGPPGIAKSLIARRL 59 (498)
T ss_pred cHHHHHHHHHHHc---cCCCEEEECCCChhHHHHHHHH
Confidence 5666766666543 3678999999999999987433
No 455
>PRK01172 ski2-like helicase; Provisional
Probab=88.34 E-value=1.8 Score=53.09 Aligned_cols=89 Identities=20% Similarity=0.313 Sum_probs=66.6
Q ss_pred HHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCC--------------------cEEEEecCCCCHHHHHHHHHhhhcCC
Q 003260 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD--------------------IKVGLLSRFQSKAEKEEHLDMIKHGH 386 (835)
Q Consensus 327 ~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~g--------------------i~V~~l~g~~s~~e~~~~l~~l~~G~ 386 (835)
....+++++|.+|++.-+...+..+.+.+..... ..|++++++.+..++....+...+|.
T Consensus 232 ~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~ 311 (674)
T PRK01172 232 TVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRY 311 (674)
T ss_pred HHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCC
Confidence 3556889999999999888888887765432211 23788999999999999999999999
Q ss_pred cceeeccHHHhhcccccCCccEEEEcCcccc
Q 003260 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRF 417 (835)
Q Consensus 387 ~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~ 417 (835)
.+|+|+|.. +...+++.. ..|||+...++
T Consensus 312 i~VLvaT~~-la~Gvnipa-~~VII~~~~~~ 340 (674)
T PRK01172 312 IKVIVATPT-LAAGVNLPA-RLVIVRDITRY 340 (674)
T ss_pred CeEEEecch-hhccCCCcc-eEEEEcCceEe
Confidence 999999954 444455555 35677665554
No 456
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=88.34 E-value=2.4 Score=52.26 Aligned_cols=103 Identities=23% Similarity=0.251 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHhhh-------cCCCC-CcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003260 285 DQKKAFLDVERDLT-------ERETP-MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 285 ~Q~~AI~~il~dl~-------~~~~~-~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
-|..|+..+.+.+. ...+| ..+++.||||.|||+.+-..+. .+-.+...++-....+-...| .+....+
T Consensus 495 GQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~-~Lfg~e~aliR~DMSEy~EkH--sVSrLIG 571 (786)
T COG0542 495 GQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE-ALFGDEQALIRIDMSEYMEKH--SVSRLIG 571 (786)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH-HhcCCCccceeechHHHHHHH--HHHHHhC
Confidence 47888877765432 23344 4778899999999998754443 334445667766666655543 3444455
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCcccc
Q 003260 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRF 417 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~ 417 (835)
..|| -|++=.|+ .|...+.-+-+++|.+||+...
T Consensus 572 aPPG-YVGyeeGG--------------------------~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 572 APPG-YVGYEEGG--------------------------QLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred CCCC-Cceecccc--------------------------chhHhhhcCCCeEEEechhhhc
Confidence 5443 34443332 2223333445889999998764
No 457
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=88.28 E-value=1.5 Score=51.60 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=25.9
Q ss_pred cCCccEEEEcCccccchhhHHHH-hhhc-CCceEEEeecCC
Q 003260 403 YNNLGLLVVDEEQRFGVKQKEKI-ASFK-ISVDVLTLSATP 441 (835)
Q Consensus 403 ~~~l~llVIDEaHr~g~~~~e~l-~~l~-~~~~vL~lSATp 441 (835)
..++.+.||||+|.+.......+ +.+. +..+|++.=||-
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATT 157 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATT 157 (515)
T ss_pred cccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecC
Confidence 46889999999999876555443 3332 445565555664
No 458
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=88.28 E-value=1.8 Score=48.39 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCcccHHH
Q 003260 302 TPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~va 320 (835)
....++|.|++|+||+.+|
T Consensus 21 ~~~pVLI~GE~GtGK~~lA 39 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIA 39 (329)
T ss_pred CCCCEEEECCCCChHHHHH
Confidence 4578999999999999875
No 459
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.25 E-value=1.2 Score=49.76 Aligned_cols=73 Identities=14% Similarity=0.227 Sum_probs=61.6
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEE
Q 003260 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 332 ~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llV 410 (835)
.+.+|.|-|+.-|..++.++.+. |..|.+++|.....+|...+..++.|...|+|+|.-.- +.++...+.+||
T Consensus 331 gqsiIFc~tk~ta~~l~~~m~~~-----Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~A-RGiDv~qVs~Vv 403 (477)
T KOG0332|consen 331 GQSIIFCHTKATAMWLYEEMRAE-----GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCA-RGIDVAQVSVVV 403 (477)
T ss_pred hheEEEEeehhhHHHHHHHHHhc-----CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhh-cccccceEEEEE
Confidence 58899999999999999999874 88999999999999999999999999999999996433 344555555554
No 460
>PRK04195 replication factor C large subunit; Provisional
Probab=88.14 E-value=4.1 Score=47.99 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcc
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvP 339 (835)
+.+.+..++..+..+..+..+|+.||+|+|||..+-..+-.. +..++.+-+
T Consensus 22 ~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el---~~~~ielna 72 (482)
T PRK04195 22 AKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY---GWEVIELNA 72 (482)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEcc
Confidence 334444444433223335789999999999998764443322 455665543
No 461
>PRK10865 protein disaggregation chaperone; Provisional
Probab=88.00 E-value=2.4 Score=53.43 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH
Q 003260 287 KKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 287 ~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~ 326 (835)
..-+..+.+-++ .....+.|+.||+|+|||.++-..+..
T Consensus 184 ~~ei~~~i~iL~-r~~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 184 DEEIRRTIQVLQ-RRTKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred HHHHHHHHHHHh-cCCcCceEEECCCCCCHHHHHHHHHHH
Confidence 333454544332 344578999999999999887544443
No 462
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.92 E-value=2.9 Score=49.63 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=17.0
Q ss_pred CCCCcEEEEccCCCcccHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~va 320 (835)
..++-+|++||+|+|||..|
T Consensus 221 ~PprGvLlHGPPGCGKT~lA 240 (802)
T KOG0733|consen 221 RPPRGVLLHGPPGCGKTSLA 240 (802)
T ss_pred CCCCceeeeCCCCccHHHHH
Confidence 45678999999999999765
No 463
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=87.86 E-value=0.99 Score=38.61 Aligned_cols=55 Identities=20% Similarity=0.399 Sum_probs=49.1
Q ss_pred CcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCcc
Q 003260 360 DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 360 gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaH 415 (835)
++++..+++..+..++...++.+.++..+|+|+| ..+...+++.++++||+=+.+
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t-~~~~~Gid~~~~~~vi~~~~~ 61 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIAT-DILGEGIDLPDASHVIFYDPP 61 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEES-CGGTTSSTSTTESEEEESSSE
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEee-ccccccccccccccccccccC
Confidence 7899999999999999999999999999999999 567778888899998886654
No 464
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.62 E-value=6.4 Score=45.54 Aligned_cols=123 Identities=16% Similarity=0.181 Sum_probs=61.4
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHH-HcCC-CE-EEEEccc-HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCV-VSAG-KQ-AMVLAPT-IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~-l~~g-~q-vlVLvPt-r~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~ 378 (835)
+.-+.++||||+|||......+... ...+ .. .++...+ +.-+.++...+.+.+ |+.+..... ..+....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~il----Gvp~~~v~~---~~dl~~a 263 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLL----GVSVRSIKD---IADLQLM 263 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHc----CCceecCCC---HHHHHHH
Confidence 5568899999999998864333222 2222 23 3444444 333444444444432 444433322 1111111
Q ss_pred HHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccc--hhhHHHHhhh---c-CCceEEEeecCCChhhHHHHHhc
Q 003260 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFG--VKQKEKIASF---K-ISVDVLTLSATPIPRTLYLALTG 452 (835)
Q Consensus 379 l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g--~~~~e~l~~l---~-~~~~vL~lSATp~p~tl~~~~~g 452 (835)
+ ..+.+.++++||.+=+.- ....+.+..+ . +...+|.+|||.....+......
T Consensus 264 l---------------------~~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~ 322 (420)
T PRK14721 264 L---------------------HELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISA 322 (420)
T ss_pred H---------------------HHhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHH
Confidence 1 124567788888763221 0112223333 1 23456889999888777655544
Q ss_pred C
Q 003260 453 F 453 (835)
Q Consensus 453 ~ 453 (835)
+
T Consensus 323 f 323 (420)
T PRK14721 323 Y 323 (420)
T ss_pred h
Confidence 3
No 465
>PRK10436 hypothetical protein; Provisional
Probab=87.62 E-value=1 Score=52.61 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=32.8
Q ss_pred CCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-CCEEEEEc
Q 003260 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLA 338 (835)
Q Consensus 282 ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-g~qvlVLv 338 (835)
+.+.|.+.+..+... + ..-+|++||||||||... .+++..+.. +..++-+-
T Consensus 202 ~~~~~~~~l~~~~~~----~-~GliLvtGpTGSGKTTtL-~a~l~~~~~~~~~i~TiE 253 (462)
T PRK10436 202 MTPAQLAQFRQALQQ----P-QGLILVTGPTGSGKTVTL-YSALQTLNTAQINICSVE 253 (462)
T ss_pred cCHHHHHHHHHHHHh----c-CCeEEEECCCCCChHHHH-HHHHHhhCCCCCEEEEec
Confidence 567788887776542 2 346899999999999874 344444433 34444433
No 466
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=87.61 E-value=4.2 Score=46.70 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCcccHHH
Q 003260 303 PMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~va 320 (835)
...++++|++|+|||=..
T Consensus 113 ~nplfi~G~~GlGKTHLl 130 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLL 130 (408)
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467899999999999653
No 467
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=87.27 E-value=4.3 Score=43.63 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=28.4
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcC-CCEEEEEcccHHHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~-g~qvlVLvPtr~LA~Q~~~ 349 (835)
|+++|..||+|+|||..|= ++.+ -+--++++-..+|.-.|.-
T Consensus 151 PknVLFyGppGTGKTm~Ak-----alane~kvp~l~vkat~liGehVG 193 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAK-----ALANEAKVPLLLVKATELIGEHVG 193 (368)
T ss_pred cceeEEECCCCccHHHHHH-----HHhcccCCceEEechHHHHHHHhh
Confidence 7899999999999997652 2222 2445666766666655443
No 468
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=87.10 E-value=4.3 Score=50.37 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=18.1
Q ss_pred CCCCcEEEEccCCCcccHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a 323 (835)
..++.+|+.||+|+|||..+-..
T Consensus 485 ~~~~giLL~GppGtGKT~lakal 507 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAV 507 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHH
Confidence 34567999999999999876433
No 469
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.08 E-value=1.8 Score=48.70 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=26.2
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcC--CCEEEEEcccHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVL 343 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~--g~qvlVLvPtr~L 343 (835)
...++++||||||||... .+++..+.. +.+++.+--..++
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKNAAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcCCCCEEEEEcCChhh
Confidence 356899999999999874 344444442 3566666554443
No 470
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.04 E-value=4.7 Score=50.72 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=20.8
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
....+.++.||+|+|||.++-..+...
T Consensus 198 ~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 198 RTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred cccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 445789999999999999875554443
No 471
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=86.67 E-value=2.1 Score=43.58 Aligned_cols=37 Identities=3% Similarity=-0.044 Sum_probs=30.2
Q ss_pred EEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHH
Q 003260 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIV 342 (835)
Q Consensus 306 ~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~ 342 (835)
+.|.-..|=|||.+|+-.++.++..|.+|+|+.=.+-
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg 60 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKG 60 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecC
Confidence 4455556999999999999999999999999875543
No 472
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=86.64 E-value=1.7 Score=45.45 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=28.7
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcC------CCEEEEEcc
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSA------GKQAMVLAP 339 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~------g~qvlVLvP 339 (835)
+.+.-+.|+|++|+|||..++..+...... +..++++.-
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 346678999999999999987776654433 367787764
No 473
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=86.42 E-value=10 Score=43.08 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=16.5
Q ss_pred CCCCcEEEEccCCCcccHH
Q 003260 301 ETPMDRLICGDVGFGKTEV 319 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~v 319 (835)
..++.+.+.|++|.|||..
T Consensus 60 ~~~~GlYl~G~vG~GKT~L 78 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTML 78 (362)
T ss_pred CCCceEEEECCCCCchhHH
Confidence 3578899999999999974
No 474
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=86.26 E-value=2.8 Score=55.39 Aligned_cols=90 Identities=18% Similarity=0.154 Sum_probs=67.9
Q ss_pred HHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCC----------------------------CCcEEEEecCCCCHHHH
Q 003260 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY----------------------------PDIKVGLLSRFQSKAEK 375 (835)
Q Consensus 324 ~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~----------------------------~gi~V~~l~g~~s~~e~ 375 (835)
++..+..+.++||.++|+..|..++..+.+..... +...+...||+.+..++
T Consensus 237 il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 237 ILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred HHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 34445567899999999999999998887643210 01225678899999999
Q ss_pred HHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCc
Q 003260 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEE 414 (835)
Q Consensus 376 ~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEa 414 (835)
....+.+++|+.+++|+|..+ .-.+++.++++||.=+.
T Consensus 317 ~~IE~~fK~G~LrvLVATssL-ELGIDIg~VDlVIq~gs 354 (1490)
T PRK09751 317 AITEQALKSGELRCVVATSSL-ELGIDMGAVDLVIQVAT 354 (1490)
T ss_pred HHHHHHHHhCCceEEEeCcHH-HccCCcccCCEEEEeCC
Confidence 999999999999999999654 33567778888876444
No 475
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=86.14 E-value=0.96 Score=47.27 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=38.9
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
+.+.-+++.|++|+|||..++..+...+.+|..++++.... -..|+.+.+..
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~-~~~~l~~~~~~ 65 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE-REERILGYAKS 65 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHH
Confidence 34677899999999999998888877777788888876543 35565555543
No 476
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=86.08 E-value=1 Score=47.24 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=34.2
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 350 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~ 350 (835)
+.+..+++.|++|+|||..++..+...+.++..++++.-. ..+.++.+.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e-~~~~~i~~~ 66 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE-ESRESIIRQ 66 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc-CCHHHHHHH
Confidence 4567889999999999998876666666667777777642 233444433
No 477
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=85.81 E-value=5.9 Score=40.66 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=29.6
Q ss_pred EEEEccCCCcccHHHHHHHHHHHcCCCEEEEEccc
Q 003260 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 340 (835)
Q Consensus 306 ~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPt 340 (835)
++|.-..|=|||.+++=.++.++..|.+|+|+.=-
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFi 65 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFI 65 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEe
Confidence 56667778889999999999999999999998643
No 478
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=85.76 E-value=27 Score=39.05 Aligned_cols=149 Identities=15% Similarity=0.218 Sum_probs=76.9
Q ss_pred CCcceeeccHHHhhcccccCCccEEEEcCccccchh-------hHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcc
Q 003260 385 GHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVK-------QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 457 (835)
Q Consensus 385 G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~-------~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s 457 (835)
..+||||.-.+ +++.-..+++++|++|-.+-||.. .+|-+..+ ...+++.++..+........... ...+
T Consensus 127 ~~~dviilDDG-fQh~~L~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~~l-~rAD~vi~~~~~~~~~~~~~~~~-~~~p 203 (326)
T PF02606_consen 127 FPADVIILDDG-FQHRRLKRDLDIVLVDADRPFGNGFLLPAGPLREPLSAL-KRADAVIVTGCDASDPAIEKAIR-PGKP 203 (326)
T ss_pred CCCCEEEEcCC-cccccccCCcEEEEEeCCCCCcCCccCCCCcccCChhHh-CcccEEEEcCCCcchhHHHHhhh-cCCc
Confidence 34777776533 332223478889999987766442 23334433 45566767655433222111111 1111
Q ss_pred eecCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEE-----EeCCCCHHH
Q 003260 458 LISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAI-----AHGQQYSRQ 532 (835)
Q Consensus 458 ~I~~~p~~r~~v~~~~~~~~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~-----lhg~m~~~e 532 (835)
++ ........-..... ....--.+.+++.|| .+..-+.+.+.|++. |+.+.- =|-..+..+
T Consensus 204 ~~----------~~~~~~~~~~~~~~-~~~~~l~~~~v~a~s-GIg~P~~F~~~L~~~--G~~~~~~~~f~DHh~yt~~d 269 (326)
T PF02606_consen 204 IF----------SARLKPEGLRNLNT-GSIEPLKGKPVLAFS-GIGNPERFFDTLESL--GIEVVGTLAFPDHHRYTEQD 269 (326)
T ss_pred eE----------EEEEEecccccccc-cchhhccCCeeEEEE-EcCChHHHHHHHHHc--CCeEEEeeECCCCCCCCHHH
Confidence 11 11111000000000 000012455666665 567778888889886 555442 277788888
Q ss_pred HHHHHHHhhcCCeeEEEEcC
Q 003260 533 LEETMEKFAQGAIKILICTN 552 (835)
Q Consensus 533 re~vl~~F~~g~~~ILVaT~ 552 (835)
.+.+....+... .||+|.
T Consensus 270 l~~l~~~a~~~~--~iltTe 287 (326)
T PF02606_consen 270 LEKLEAEAKAAG--IILTTE 287 (326)
T ss_pred HHHHHHhhcccc--eEEecH
Confidence 888888776555 888885
No 479
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=85.72 E-value=0.69 Score=48.72 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=18.5
Q ss_pred CcEEEEccCCCcccHHHHHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
-+.++.||+|.|||...+..+-..
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHH
Confidence 368999999999999876554433
No 480
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=85.65 E-value=9.3 Score=47.48 Aligned_cols=19 Identities=42% Similarity=0.578 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCcccHHH
Q 003260 302 TPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~va 320 (835)
.+..++++||+|+|||..+
T Consensus 211 ~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCceEEEECCCCCChHHHH
Confidence 3567999999999999764
No 481
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=85.65 E-value=0.98 Score=48.49 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=40.4
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
+.+..++|.|++|||||.-++..+...+..|..++++.- .+...+..+.+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~-~e~~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVST-EESPEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEe-cCCHHHHHHHHHH
Confidence 567889999999999999999988888888887777654 3455565555654
No 482
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=85.61 E-value=1.4 Score=52.92 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=32.8
Q ss_pred CCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-CCEEEEEc
Q 003260 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLA 338 (835)
Q Consensus 282 ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-g~qvlVLv 338 (835)
+.|.|.+.+..+... ...-+|++||||||||... .+++..+.. +..++-+-
T Consensus 300 ~~~~~~~~l~~~~~~-----~~Glilv~G~tGSGKTTtl-~a~l~~~~~~~~~i~tiE 351 (564)
T TIGR02538 300 FEPDQKALFLEAIHK-----PQGMVLVTGPTGSGKTVSL-YTALNILNTEEVNISTAE 351 (564)
T ss_pred CCHHHHHHHHHHHHh-----cCCeEEEECCCCCCHHHHH-HHHHHhhCCCCceEEEec
Confidence 467888887776542 2346899999999999874 444555533 34444333
No 483
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.46 E-value=0.56 Score=51.49 Aligned_cols=20 Identities=35% Similarity=0.410 Sum_probs=17.0
Q ss_pred CcEEEEccCCCcccHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a 323 (835)
.|+|+.||||||||+.|...
T Consensus 98 SNILLiGPTGsGKTlLAqTL 117 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTL 117 (408)
T ss_pred ccEEEECCCCCcHHHHHHHH
Confidence 58999999999999877543
No 484
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=85.34 E-value=5.9 Score=49.98 Aligned_cols=38 Identities=21% Similarity=0.306 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
|..-|..+..-+. ..+..+.|+.||+|+|||.++-..+
T Consensus 192 r~~ei~~~i~~l~-r~~~~n~lLvG~pGvGKTal~~~La 229 (852)
T TIGR03345 192 RDDEIRQMIDILL-RRRQNNPILTGEAGVGKTAVVEGLA 229 (852)
T ss_pred CHHHHHHHHHHHh-cCCcCceeEECCCCCCHHHHHHHHH
Confidence 4445666655442 3455789999999999998864443
No 485
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=85.27 E-value=3.5 Score=47.51 Aligned_cols=68 Identities=19% Similarity=0.207 Sum_probs=41.7
Q ss_pred CCCCChHHHHHHHhCCCCCCHhHHHH-HHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH-HHcCC
Q 003260 264 PYPKNPAIAEFAAQFPYEPTPDQKKA-FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC-VVSAG 331 (835)
Q Consensus 264 ~~~~~~l~~~~~~~f~~~ptp~Q~~A-I~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~-~l~~g 331 (835)
.|..++|.+-+..+.+|+|+..-.++ +..+.+-+.=-+++.|+++.||+|+|||-.|...... ++..|
T Consensus 169 ~FT~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG 238 (449)
T TIGR02688 169 EFTLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG 238 (449)
T ss_pred hcCHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC
Confidence 36667788888888888776443322 2222221001134679999999999999777543333 44455
No 486
>PRK06835 DNA replication protein DnaC; Validated
Probab=85.23 E-value=1.1 Score=50.01 Aligned_cols=44 Identities=20% Similarity=0.164 Sum_probs=31.8
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~ 347 (835)
..+++++|+||+|||-.+...+-..+..|..|+++ +...|..+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~-t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYR-TADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE-EHHHHHHHH
Confidence 37899999999999987766666666677777665 444555443
No 487
>PRK00254 ski2-like helicase; Provisional
Probab=85.22 E-value=3.2 Score=51.42 Aligned_cols=90 Identities=17% Similarity=0.235 Sum_probs=64.5
Q ss_pred HHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCC----------------------------CCcEEEEecCCCCHH
Q 003260 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY----------------------------PDIKVGLLSRFQSKA 373 (835)
Q Consensus 322 ~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~----------------------------~gi~V~~l~g~~s~~ 373 (835)
..+...+..+.+++|.+||+.-+...+..+...+..+ ....|+..+++.+..
T Consensus 229 ~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~ 308 (720)
T PRK00254 229 SLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRT 308 (720)
T ss_pred HHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHH
Confidence 3445556678899999999977766555553321100 012489999999999
Q ss_pred HHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEc
Q 003260 374 EKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVD 412 (835)
Q Consensus 374 e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVID 412 (835)
+|....+.+.+|..+|+|+|..+- ..+++....+||.|
T Consensus 309 eR~~ve~~F~~G~i~VLvaT~tLa-~Gvnipa~~vVI~~ 346 (720)
T PRK00254 309 ERVLIEDAFREGLIKVITATPTLS-AGINLPAFRVIIRD 346 (720)
T ss_pred HHHHHHHHHHCCCCeEEEeCcHHh-hhcCCCceEEEECC
Confidence 999999999999999999997544 34566666766654
No 488
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=85.17 E-value=6.3 Score=52.41 Aligned_cols=118 Identities=15% Similarity=0.204 Sum_probs=69.5
Q ss_pred CCHhHHHHHHHHHHhhhcCCCCCcEEEEccCC-CcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCC
Q 003260 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVG-FGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 360 (835)
Q Consensus 282 ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TG-sGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~g 360 (835)
+++.|..|+..++.+ ++.-.++.+.-| +|||...-......-..|..|.+|+|+..-+.++.+.. +
T Consensus 282 ~~~~q~~Av~~il~d-----r~~v~iv~~~GgAtGKtt~l~~l~~~a~~~G~~V~~lApt~~a~~~L~e~~--------g 348 (1623)
T PRK14712 282 RTAGYSDAVSVLAQD-----RPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNLKQDE--------R 348 (1623)
T ss_pred cchhHHHHHHHHhcC-----CCceEEEEecccccccHHHHHHHHHHHHhCCcEEEEEeCCHHHHHHHHhcc--------C
Confidence 467899999998842 223335555544 89998754222223347999999999998887654321 2
Q ss_pred cEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhhh--cCCceEEEe
Q 003260 361 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF--KISVDVLTL 437 (835)
Q Consensus 361 i~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l--~~~~~vL~l 437 (835)
+.-..+.+ ...+.....+..=.++||||+..++..+...|..+ ..+.++|++
T Consensus 349 i~a~Tva~-------------------------~~~~l~~~~~~~~~ilIVDEA~~Ls~rdm~~Ll~~A~~~garVllg 402 (1623)
T PRK14712 349 LSGELITG-------------------------RRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLIT 402 (1623)
T ss_pred CCchhhhh-------------------------hhhhhcccCCCCCcEEEEECCCcCCHHHHHHHHHHHHhcCCEEEEE
Confidence 22111111 01011111122337999999999999877666443 456776644
No 489
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=85.17 E-value=1.2 Score=46.61 Aligned_cols=40 Identities=25% Similarity=0.332 Sum_probs=32.1
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEccc
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 340 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPt 340 (835)
+.+.-+++.|++|+|||..++..+...+..+..|+++.-.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3466789999999999999888887777778888877544
No 490
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=85.16 E-value=2.8 Score=46.54 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=28.9
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcC------CCEEEEEcc
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSA------GKQAMVLAP 339 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~------g~qvlVLvP 339 (835)
+.+.-+.|+|++|+|||..++..+...... +..++|+.-
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~t 144 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDT 144 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeC
Confidence 456778899999999999988777665432 247777763
No 491
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=85.05 E-value=16 Score=40.25 Aligned_cols=64 Identities=13% Similarity=0.030 Sum_probs=37.7
Q ss_pred CChHHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEE--EEccCCCcccHHHHHHHHHHHcCC
Q 003260 267 KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRL--ICGDVGFGKTEVALRAIFCVVSAG 331 (835)
Q Consensus 267 ~~~l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~L--l~a~TGsGKT~val~a~l~~l~~g 331 (835)
.+.+...+.....-+. -.++..++.+...+......+..+ +.|.||+||..|+-+.+-.....|
T Consensus 73 ~~~Le~dL~~~lfGQH-la~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G 138 (344)
T KOG2170|consen 73 LDGLEKDLARALFGQH-LAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG 138 (344)
T ss_pred chHHHHHHHHHhhchH-HHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcc
Confidence 3446666655444332 345556666666554333334444 479999999999877666554444
No 492
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=85.03 E-value=2.5 Score=52.94 Aligned_cols=77 Identities=13% Similarity=0.241 Sum_probs=62.6
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEE
Q 003260 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llV 410 (835)
..++||.+|+..-+...++.+.+.+. +++.+..++|..+..++...++...+|...|||+|. .....+.+.++.+||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~--~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn-IAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLD--SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN-IAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcC--CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc-hHhhcccccCceEEE
Confidence 56899999999999998888876543 368999999999999999999999999999999996 333445666776554
No 493
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=84.90 E-value=3.3 Score=52.98 Aligned_cols=75 Identities=11% Similarity=0.114 Sum_probs=64.6
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEE
Q 003260 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llV 410 (835)
+...||.+.++.-+.++++.+... |+++..++++.+..+|....+.+..|+++|||+|. .+...++..++.+||
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~-----Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATd-AFGMGIDkPDVR~VI 753 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEF-----GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATV-AFGMGINKPDVRFVI 753 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHC-----CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEec-hhhcCCCccCCcEEE
Confidence 456889999999998888887752 78999999999999999999999999999999995 456678888999988
Q ss_pred E
Q 003260 411 V 411 (835)
Q Consensus 411 I 411 (835)
-
T Consensus 754 H 754 (1195)
T PLN03137 754 H 754 (1195)
T ss_pred E
Confidence 4
No 494
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=84.73 E-value=1.3 Score=46.55 Aligned_cols=52 Identities=23% Similarity=0.349 Sum_probs=38.1
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
+.+.-+++.|++|+|||..+...+...+.+|.+++++.-... ..++.+.+.+
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~-~~~~~~~~~~ 74 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT-SKSYLKQMES 74 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC-HHHHHHHHHH
Confidence 456778999999999999988877777777888888765433 3445555543
No 495
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=84.68 E-value=5.7 Score=49.37 Aligned_cols=104 Identities=16% Similarity=0.101 Sum_probs=78.1
Q ss_pred CCCcEEEEccCCC----cccHHHH-HHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHH
Q 003260 302 TPMDRLICGDVGF----GKTEVAL-RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKE 376 (835)
Q Consensus 302 ~~~d~Ll~a~TGs----GKT~val-~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~ 376 (835)
+..++-+.-|... |-...++ ..+...+...+.++|.++||..|.-.+.++++.+. ..+...||..+...+.
T Consensus 219 k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~----~~i~~HHgSlSre~R~ 294 (814)
T COG1201 219 KKLEIKVISPVEDLIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGP----DIIEVHHGSLSRELRL 294 (814)
T ss_pred CcceEEEEecCCccccccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcC----CceeeecccccHHHHH
Confidence 3455555555555 5555543 34445667778999999999999999999988642 6788999999999999
Q ss_pred HHHHhhhcCCcceeeccHHHhhcccccCCccEEE
Q 003260 377 EHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 377 ~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llV 410 (835)
..-+.+++|+.+.+|||.++=. .++..++++||
T Consensus 295 ~vE~~lk~G~lravV~TSSLEL-GIDiG~vdlVI 327 (814)
T COG1201 295 EVEERLKEGELKAVVATSSLEL-GIDIGDIDLVI 327 (814)
T ss_pred HHHHHHhcCCceEEEEccchhh-ccccCCceEEE
Confidence 9999999999999999965432 34556666666
No 496
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=84.52 E-value=3.4 Score=44.43 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=20.0
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l 328 (835)
.++...+|.||.|+|||..+ ..+...+
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLl-r~I~n~l 40 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLL-QSIANAI 40 (249)
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHhcc
Confidence 45788999999999999754 4444443
No 497
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=84.48 E-value=1.1 Score=52.32 Aligned_cols=58 Identities=22% Similarity=0.193 Sum_probs=42.4
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecC
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR 368 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g 368 (835)
.+++++||||||||..++.|.+- .....++|.=|--+|....+...++. |-+|.++.-
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll--~~~~s~iV~D~KgEl~~~t~~~r~~~-----G~~V~vldp 102 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL--NYPGSMIVTDPKGELYEKTAGYRKKR-----GYKVYVLDP 102 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH--hccCCEEEEECCCcHHHHHHHHHHHC-----CCEEEEeec
Confidence 46899999999999998877653 33447888889989988776655542 335555543
No 498
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=84.32 E-value=1.1 Score=47.09 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=31.5
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcC-CCEEEEEcc
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAP 339 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-g~qvlVLvP 339 (835)
.++.-++|+|++|+|||..++..+...+.+ +..++++..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 345678999999999999888777777666 888888873
No 499
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=84.28 E-value=1.5 Score=51.60 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=32.4
Q ss_pred CCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-CCEEEEEc
Q 003260 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLA 338 (835)
Q Consensus 282 ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-g~qvlVLv 338 (835)
++|.|.+.+..+.. .+. .-++++||||||||... .+++..+.. +..++.+-
T Consensus 226 ~~~~~~~~l~~~~~----~~~-GlilitGptGSGKTTtL-~a~L~~l~~~~~~iiTiE 277 (486)
T TIGR02533 226 MSPELLSRFERLIR----RPH-GIILVTGPTGSGKTTTL-YAALSRLNTPERNILTVE 277 (486)
T ss_pred CCHHHHHHHHHHHh----cCC-CEEEEEcCCCCCHHHHH-HHHHhccCCCCCcEEEEc
Confidence 47888888877654 222 34789999999999874 334444432 34444443
No 500
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=84.27 E-value=4.6 Score=49.73 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=16.9
Q ss_pred CCCcEEEEccCCCcccHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val 321 (835)
.+.+++|.|++|+|||.+|-
T Consensus 398 ~~~pVLI~GE~GTGK~~lA~ 417 (686)
T PRK15429 398 SDSTVLILGETGTGKELIAR 417 (686)
T ss_pred CCCCEEEECCCCcCHHHHHH
Confidence 45689999999999998763
Done!