Query 003260
Match_columns 835
No_of_seqs 696 out of 4373
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 19:02:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eyq_A TRCF, transcription-rep 100.0 1.3E-97 5E-102 935.1 59.7 698 105-827 443-1147(1151)
2 1gm5_A RECG; helicase, replica 100.0 2.2E-57 7.7E-62 548.1 33.5 430 220-657 302-746 (780)
3 2db3_A ATP-dependent RNA helic 100.0 4.9E-44 1.7E-48 407.3 36.0 321 267-602 63-407 (434)
4 2i4i_A ATP-dependent RNA helic 100.0 1.1E-42 3.9E-47 390.3 33.5 324 266-604 21-385 (417)
5 2oca_A DAR protein, ATP-depend 100.0 1.9E-45 6.6E-50 425.9 9.1 387 188-599 3-452 (510)
6 1xti_A Probable ATP-dependent 100.0 7.7E-42 2.6E-46 379.8 37.1 325 265-602 13-357 (391)
7 3fht_A ATP-dependent RNA helic 100.0 8E-42 2.7E-46 381.9 35.1 335 266-619 31-391 (412)
8 3eiq_A Eukaryotic initiation f 100.0 2.3E-42 8E-47 387.0 29.9 324 266-603 46-388 (414)
9 1s2m_A Putative ATP-dependent 100.0 2.2E-41 7.6E-46 378.1 37.1 324 265-603 26-366 (400)
10 2j0s_A ATP-dependent RNA helic 100.0 6.4E-42 2.2E-46 384.1 32.7 319 270-603 48-384 (410)
11 1hv8_A Putative ATP-dependent 100.0 1.6E-41 5.4E-46 372.8 35.2 322 265-603 11-346 (367)
12 3pey_A ATP-dependent RNA helic 100.0 4.3E-41 1.5E-45 373.0 35.9 324 263-602 8-356 (395)
13 3oiy_A Reverse gyrase helicase 100.0 5.7E-42 1.9E-46 386.3 28.9 309 270-599 10-362 (414)
14 3i5x_A ATP-dependent RNA helic 100.0 1.3E-41 4.3E-46 398.6 32.0 325 270-603 83-450 (563)
15 2v1x_A ATP-dependent DNA helic 100.0 8.2E-41 2.8E-45 394.6 36.2 319 265-602 26-374 (591)
16 3sqw_A ATP-dependent RNA helic 100.0 4.2E-41 1.4E-45 396.5 32.6 325 270-603 32-399 (579)
17 1oyw_A RECQ helicase, ATP-depe 100.0 1.2E-40 4.2E-45 388.2 33.7 313 270-603 13-344 (523)
18 3fmp_B ATP-dependent RNA helic 100.0 2.2E-42 7.7E-47 397.4 16.7 319 270-602 103-446 (479)
19 2z0m_A 337AA long hypothetical 100.0 2.7E-40 9.3E-45 359.1 30.4 305 270-600 5-321 (337)
20 1fuu_A Yeast initiation factor 100.0 2E-41 6.8E-46 376.5 19.1 324 265-604 26-368 (394)
21 2p6r_A Afuhel308 helicase; pro 100.0 1.4E-39 4.7E-44 391.9 22.3 311 270-603 14-389 (702)
22 2zj8_A DNA helicase, putative 100.0 1.1E-39 3.6E-44 394.0 19.4 318 265-603 6-388 (720)
23 3l9o_A ATP-dependent RNA helic 100.0 1E-38 3.6E-43 399.3 25.2 309 271-602 174-597 (1108)
24 2va8_A SSO2462, SKI2-type heli 100.0 7.7E-38 2.6E-42 377.4 30.7 317 265-603 13-409 (715)
25 3fho_A ATP-dependent RNA helic 100.0 9.3E-39 3.2E-43 371.0 21.8 318 270-603 130-471 (508)
26 4a2p_A RIG-I, retinoic acid in 100.0 2.4E-38 8.2E-43 367.9 23.6 312 277-603 3-509 (556)
27 4ddu_A Reverse gyrase; topoiso 100.0 5.3E-38 1.8E-42 392.8 26.0 282 271-573 68-388 (1104)
28 3tbk_A RIG-I helicase domain; 100.0 7.7E-38 2.6E-42 362.8 24.2 310 279-603 2-508 (555)
29 2xgj_A ATP-dependent RNA helic 100.0 6.9E-37 2.4E-41 379.8 29.8 303 275-602 80-499 (1010)
30 1wp9_A ATP-dependent RNA helic 100.0 8.4E-37 2.9E-41 345.2 27.8 307 280-604 8-477 (494)
31 2xau_A PRE-mRNA-splicing facto 100.0 4.4E-38 1.5E-42 381.4 16.7 409 264-702 76-536 (773)
32 2v6i_A RNA helicase; membrane, 100.0 2.3E-37 7.8E-42 352.4 19.4 295 303-642 2-337 (431)
33 3dmq_A RNA polymerase-associat 100.0 3.8E-36 1.3E-40 373.0 30.9 409 150-602 51-615 (968)
34 2ykg_A Probable ATP-dependent 100.0 6.3E-37 2.1E-41 367.5 20.6 315 274-603 6-517 (696)
35 4gl2_A Interferon-induced heli 100.0 7.3E-37 2.5E-41 367.1 20.4 309 279-603 5-520 (699)
36 2fwr_A DNA repair protein RAD2 100.0 1.1E-36 3.6E-41 349.3 18.7 300 278-613 90-465 (472)
37 4a4z_A Antiviral helicase SKI2 100.0 5.6E-36 1.9E-40 371.6 26.5 306 273-601 31-491 (997)
38 4a2q_A RIG-I, retinoic acid in 100.0 3.9E-36 1.3E-40 366.9 24.5 310 278-603 245-750 (797)
39 1yks_A Genome polyprotein [con 100.0 4.4E-37 1.5E-41 350.9 14.3 290 302-650 7-338 (440)
40 2wv9_A Flavivirin protease NS2 100.0 6.2E-37 2.1E-41 365.5 12.9 321 281-642 215-575 (673)
41 1tf5_A Preprotein translocase 100.0 4.1E-34 1.4E-38 340.9 30.5 317 277-616 79-560 (844)
42 1gku_B Reverse gyrase, TOP-RG; 100.0 9.6E-36 3.3E-40 372.1 17.2 277 272-572 48-352 (1054)
43 4f92_B U5 small nuclear ribonu 100.0 3.3E-34 1.1E-38 370.4 27.2 308 281-602 926-1308(1724)
44 4a2w_A RIG-I, retinoic acid in 100.0 8.8E-35 3E-39 360.0 20.6 310 278-603 245-750 (936)
45 2jlq_A Serine protease subunit 100.0 7.1E-35 2.4E-39 333.7 16.4 279 279-602 2-311 (451)
46 4f92_B U5 small nuclear ribonu 100.0 2E-33 7E-38 363.1 24.6 311 280-604 78-475 (1724)
47 3h1t_A Type I site-specific re 100.0 1.7E-33 5.7E-38 332.2 21.6 291 280-591 177-545 (590)
48 2fsf_A Preprotein translocase 100.0 7.2E-33 2.5E-37 329.4 27.1 306 277-604 70-585 (853)
49 1nkt_A Preprotein translocase 100.0 4.8E-32 1.6E-36 322.6 32.1 307 276-604 106-619 (922)
50 2z83_A Helicase/nucleoside tri 100.0 5.1E-33 1.8E-37 319.0 18.4 263 302-602 20-313 (459)
51 2whx_A Serine protease/ntpase/ 100.0 3.1E-33 1.1E-37 331.3 13.1 276 280-600 170-476 (618)
52 3o8b_A HCV NS3 protease/helica 100.0 8.6E-33 2.9E-37 326.5 16.3 256 303-606 232-518 (666)
53 3rc3_A ATP-dependent RNA helic 100.0 1.9E-31 6.4E-36 317.8 20.2 299 270-602 117-445 (677)
54 1z63_A Helicase of the SNF2/RA 100.0 4.6E-30 1.6E-34 296.3 22.3 304 278-603 34-454 (500)
55 1z3i_X Similar to RAD54-like; 100.0 1.2E-26 4.2E-31 276.7 34.8 317 280-604 54-530 (644)
56 3jux_A Protein translocase sub 100.0 1.1E-26 3.7E-31 271.6 31.4 307 273-603 67-588 (822)
57 3mwy_W Chromo domain-containin 100.0 5.1E-27 1.7E-31 286.5 28.2 315 279-604 234-686 (800)
58 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1.1E-26 3.9E-31 287.4 25.8 308 280-600 270-707 (1038)
59 1c4o_A DNA nucleotide excision 99.9 2.3E-25 7.9E-30 266.2 35.6 165 431-603 380-551 (664)
60 2d7d_A Uvrabc system protein B 99.9 1E-24 3.4E-29 260.5 32.9 166 430-603 385-557 (661)
61 3fe2_A Probable ATP-dependent 99.9 1.6E-23 5.5E-28 219.2 21.2 184 267-462 36-238 (242)
62 1t6n_A Probable ATP-dependent 99.9 3.2E-23 1.1E-27 213.1 21.9 189 261-459 15-218 (220)
63 3iuy_A Probable ATP-dependent 99.9 1.8E-23 6.2E-28 216.3 20.1 177 270-459 31-226 (228)
64 2ipc_A Preprotein translocase 99.9 4.9E-22 1.7E-26 236.2 32.6 126 275-416 73-213 (997)
65 3ly5_A ATP-dependent RNA helic 99.9 4.1E-23 1.4E-27 219.4 20.2 175 270-456 65-257 (262)
66 2oxc_A Probable ATP-dependent 99.9 6.3E-23 2.2E-27 213.1 21.0 184 266-461 30-228 (230)
67 2pl3_A Probable ATP-dependent 99.9 7E-23 2.4E-27 213.0 21.3 184 265-461 30-232 (236)
68 1vec_A ATP-dependent RNA helic 99.9 8.7E-23 3E-27 207.3 21.0 183 265-458 8-204 (206)
69 3bor_A Human initiation factor 99.9 4.4E-23 1.5E-27 215.4 18.6 185 266-461 36-234 (237)
70 1q0u_A Bstdead; DEAD protein, 99.9 6.4E-23 2.2E-27 211.1 18.4 186 265-461 9-211 (219)
71 3fmo_B ATP-dependent RNA helic 99.9 6.3E-23 2.2E-27 222.5 17.5 181 270-462 103-298 (300)
72 1qde_A EIF4A, translation init 99.9 1.5E-22 5.1E-27 208.4 19.2 184 266-462 20-217 (224)
73 3dkp_A Probable ATP-dependent 99.9 5.7E-23 2E-27 214.9 16.2 182 270-462 40-241 (245)
74 2gxq_A Heat resistant RNA depe 99.9 3.2E-22 1.1E-26 203.0 20.5 182 265-460 6-204 (207)
75 3ber_A Probable ATP-dependent 99.9 3E-22 1E-26 211.1 21.0 185 265-461 48-247 (249)
76 1wrb_A DJVLGB; RNA helicase, D 99.9 1.9E-22 6.4E-27 212.2 16.6 181 270-462 34-240 (253)
77 2hjv_A ATP-dependent RNA helic 99.8 4.8E-20 1.7E-24 181.6 15.6 110 491-603 34-143 (163)
78 3eaq_A Heat resistant RNA depe 99.8 3.8E-20 1.3E-24 190.6 14.4 111 490-603 29-139 (212)
79 2p6n_A ATP-dependent RNA helic 99.8 1E-19 3.5E-24 184.6 15.6 131 469-602 30-161 (191)
80 2rb4_A ATP-dependent RNA helic 99.8 9.3E-20 3.2E-24 181.6 15.0 120 481-603 21-148 (175)
81 1t5i_A C_terminal domain of A 99.8 1.3E-19 4.4E-24 180.5 13.9 109 491-602 30-138 (172)
82 1fuk_A Eukaryotic initiation f 99.8 9.2E-20 3.1E-24 179.9 12.3 110 491-603 29-138 (165)
83 2jgn_A DBX, DDX3, ATP-dependen 99.8 1.8E-19 6.1E-24 181.7 13.9 111 491-604 45-155 (185)
84 3i32_A Heat resistant RNA depe 99.8 1.8E-19 6E-24 195.4 13.5 110 491-603 27-136 (300)
85 2vl7_A XPD; helicase, unknown 99.8 1.9E-19 6.4E-24 210.5 14.4 291 279-598 5-518 (540)
86 1rif_A DAR protein, DNA helica 99.8 3.1E-19 1.1E-23 191.0 14.5 150 280-444 112-265 (282)
87 3b6e_A Interferon-induced heli 99.8 6E-19 2E-23 179.4 10.8 151 277-440 29-216 (216)
88 3llm_A ATP-dependent RNA helic 99.8 3.2E-18 1.1E-22 178.6 15.8 158 272-445 52-222 (235)
89 2yjt_D ATP-dependent RNA helic 99.6 4.5E-20 1.5E-24 183.2 0.0 110 491-603 29-138 (170)
90 2fz4_A DNA repair protein RAD2 99.8 2.7E-18 9.3E-23 179.8 13.5 140 277-444 89-231 (237)
91 2qsr_A Transcription-repair co 99.7 2.1E-17 7.3E-22 164.5 15.8 147 681-829 8-158 (173)
92 3crv_A XPD/RAD3 related DNA he 99.7 1.8E-15 6.2E-20 177.1 29.9 277 280-572 2-472 (551)
93 4a15_A XPD helicase, ATP-depen 99.6 3.6E-14 1.2E-18 168.2 25.1 85 280-368 2-87 (620)
94 1z5z_A Helicase of the SNF2/RA 99.5 1.6E-14 5.4E-19 154.3 11.4 123 480-604 100-226 (271)
95 3mlq_E Transcription-repair co 99.4 1.2E-13 4.3E-18 116.9 2.3 69 153-226 2-71 (71)
96 2lqk_A Transcriptional regulat 98.0 6.3E-09 2.1E-13 87.9 0.0 50 153-204 6-57 (70)
97 1w36_D RECD, exodeoxyribonucle 98.4 1.3E-06 4.5E-11 103.3 12.9 150 270-438 137-296 (608)
98 4b3f_X DNA-binding protein smu 98.3 6.1E-05 2.1E-09 89.6 25.2 68 280-353 188-255 (646)
99 3upu_A ATP-dependent DNA helic 98.1 2.4E-05 8.3E-10 89.2 14.9 134 279-436 23-160 (459)
100 2xzl_A ATP-dependent helicase 98.0 3.2E-05 1.1E-09 94.2 14.7 67 280-353 359-426 (802)
101 2gk6_A Regulator of nonsense t 98.0 5.2E-05 1.8E-09 89.9 16.0 67 280-353 179-246 (624)
102 3e1s_A Exodeoxyribonuclease V, 98.0 3.8E-05 1.3E-09 90.2 14.1 124 279-436 187-311 (574)
103 3lfu_A DNA helicase II; SF1 he 98.0 0.00014 4.7E-09 86.1 18.9 80 280-368 8-92 (647)
104 2wjy_A Regulator of nonsense t 97.9 0.00011 3.8E-09 89.4 15.6 67 280-353 355-422 (800)
105 1uaa_A REP helicase, protein ( 97.5 0.0025 8.4E-08 76.0 18.6 80 281-369 2-87 (673)
106 2j9r_A Thymidine kinase; TK1, 97.4 0.00053 1.8E-08 70.2 9.7 108 303-440 28-136 (214)
107 2orw_A Thymidine kinase; TMTK, 97.3 0.00062 2.1E-08 67.9 9.4 39 303-341 3-41 (184)
108 1xx6_A Thymidine kinase; NESG, 97.2 0.00077 2.6E-08 67.8 8.7 39 303-341 8-46 (191)
109 3e2i_A Thymidine kinase; Zn-bi 96.8 0.0027 9.3E-08 64.9 8.9 105 302-435 27-132 (219)
110 2b8t_A Thymidine kinase; deoxy 96.8 0.00061 2.1E-08 70.3 4.0 40 302-341 11-50 (223)
111 1a5t_A Delta prime, HOLB; zinc 96.8 0.0058 2E-07 66.4 11.9 46 282-327 3-48 (334)
112 2o0j_A Terminase, DNA packagin 96.6 0.02 6.8E-07 63.7 14.7 121 278-418 160-286 (385)
113 1w4r_A Thymidine kinase; type 96.5 0.0034 1.2E-07 63.2 6.7 38 303-340 20-57 (195)
114 3cpe_A Terminase, DNA packagin 96.4 0.044 1.5E-06 64.3 16.4 121 278-419 160-287 (592)
115 2hjv_A ATP-dependent RNA helic 96.3 0.027 9.3E-07 54.3 11.6 92 314-413 20-111 (163)
116 3hgt_A HDA1 complex subunit 3; 96.2 0.017 5.8E-07 62.6 10.4 116 481-604 113-239 (328)
117 1fuk_A Eukaryotic initiation f 96.2 0.027 9.1E-07 54.4 10.9 90 316-413 17-106 (165)
118 2orv_A Thymidine kinase; TP4A 96.1 0.0052 1.8E-07 63.5 5.7 39 303-341 19-57 (234)
119 3ec2_A DNA replication protein 96.1 0.029 9.8E-07 54.7 10.7 63 283-346 16-81 (180)
120 3vkw_A Replicase large subunit 96.1 0.014 4.8E-07 65.9 9.4 102 304-437 162-266 (446)
121 2p65_A Hypothetical protein PF 96.0 0.033 1.1E-06 53.6 10.7 39 286-325 27-65 (187)
122 2jgn_A DBX, DDX3, ATP-dependen 96.0 0.015 5E-07 57.7 8.0 92 313-411 29-120 (185)
123 1fnn_A CDC6P, cell division co 96.0 0.083 2.9E-06 57.4 14.9 54 284-338 23-80 (389)
124 1gm5_A RECG; helicase, replica 96.0 0.013 4.6E-07 70.9 9.1 92 486-577 411-505 (780)
125 1t5i_A C_terminal domain of A 96.0 0.027 9.4E-07 54.9 9.8 92 314-413 16-107 (172)
126 3te6_A Regulatory protein SIR3 95.9 0.033 1.1E-06 60.3 11.2 39 285-323 27-65 (318)
127 2rb4_A ATP-dependent RNA helic 95.9 0.02 6.7E-07 55.9 8.5 76 330-411 33-108 (175)
128 1l8q_A Chromosomal replication 95.8 0.07 2.4E-06 57.2 13.3 37 302-338 36-72 (324)
129 2p6n_A ATP-dependent RNA helic 95.8 0.033 1.1E-06 55.5 9.8 75 331-411 54-128 (191)
130 1jbk_A CLPB protein; beta barr 95.8 0.024 8.3E-07 54.5 8.5 36 287-323 28-63 (195)
131 3bos_A Putative DNA replicatio 95.7 0.019 6.5E-07 57.9 7.8 50 286-336 36-85 (242)
132 1c4o_A DNA nucleotide excision 95.7 0.044 1.5E-06 65.3 11.8 99 315-419 423-521 (664)
133 3eaq_A Heat resistant RNA depe 95.7 0.05 1.7E-06 55.0 10.7 91 313-411 15-105 (212)
134 2d7d_A Uvrabc system protein B 95.6 0.044 1.5E-06 65.2 11.8 99 315-419 429-527 (661)
135 2qby_B CDC6 homolog 3, cell di 95.6 0.068 2.3E-06 58.2 12.4 41 283-323 25-65 (384)
136 1njg_A DNA polymerase III subu 95.6 0.072 2.5E-06 53.0 11.6 23 302-324 44-66 (250)
137 3u61_B DNA polymerase accessor 95.4 0.049 1.7E-06 58.3 10.0 37 286-322 31-67 (324)
138 1pjr_A PCRA; DNA repair, DNA r 95.4 0.02 6.7E-07 68.9 7.5 80 280-368 10-94 (724)
139 2chg_A Replication factor C sm 95.4 0.071 2.4E-06 52.5 10.5 36 287-323 23-58 (226)
140 3pfi_A Holliday junction ATP-d 95.3 0.14 4.9E-06 54.9 13.6 22 301-322 53-74 (338)
141 2gno_A DNA polymerase III, gam 95.2 0.11 3.7E-06 55.8 12.0 37 286-323 2-38 (305)
142 3kl4_A SRP54, signal recogniti 95.2 0.11 3.7E-06 58.7 12.4 117 303-441 97-223 (433)
143 2v1u_A Cell division control p 95.0 0.11 3.7E-06 56.3 11.5 24 300-323 41-64 (387)
144 2i4i_A ATP-dependent RNA helic 95.0 0.079 2.7E-06 58.2 10.4 86 320-411 265-350 (417)
145 3syl_A Protein CBBX; photosynt 95.0 0.13 4.5E-06 54.3 11.6 23 301-323 65-87 (309)
146 3u4q_A ATP-dependent helicase/ 94.9 0.03 1E-06 71.4 7.4 68 280-356 9-82 (1232)
147 2kjq_A DNAA-related protein; s 94.9 0.046 1.6E-06 52.3 7.1 21 302-322 35-55 (149)
148 1jr3_A DNA polymerase III subu 94.8 0.12 4.2E-06 55.9 11.3 38 286-323 21-58 (373)
149 2bjv_A PSP operon transcriptio 94.8 0.094 3.2E-06 54.4 9.7 20 302-321 28-47 (265)
150 4fcw_A Chaperone protein CLPB; 94.7 0.038 1.3E-06 58.5 6.6 21 304-324 48-68 (311)
151 2eyq_A TRCF, transcription-rep 94.7 0.099 3.4E-06 66.1 11.3 96 322-421 803-898 (1151)
152 1d2n_A N-ethylmaleimide-sensit 94.6 0.23 7.8E-06 51.7 12.4 24 301-324 62-85 (272)
153 3i32_A Heat resistant RNA depe 94.6 0.11 3.7E-06 55.7 9.9 93 313-413 12-104 (300)
154 3dm5_A SRP54, signal recogniti 94.6 0.32 1.1E-05 54.9 14.1 51 303-353 100-152 (443)
155 3i5x_A ATP-dependent RNA helic 94.6 0.22 7.5E-06 57.4 13.2 82 329-413 337-418 (563)
156 3co5_A Putative two-component 94.6 0.033 1.1E-06 52.6 5.1 19 302-320 26-44 (143)
157 3pvs_A Replication-associated 94.6 0.027 9.1E-07 63.9 5.3 20 302-321 49-68 (447)
158 1g5t_A COB(I)alamin adenosyltr 94.4 0.098 3.4E-06 52.6 8.5 36 304-339 29-64 (196)
159 2zpa_A Uncharacterized protein 94.4 0.069 2.4E-06 63.2 8.5 115 281-442 175-289 (671)
160 1wp9_A ATP-dependent RNA helic 94.3 0.14 4.9E-06 56.5 10.5 98 312-415 340-447 (494)
161 3eie_A Vacuolar protein sortin 94.3 0.22 7.6E-06 53.4 11.6 21 303-323 51-71 (322)
162 2z4s_A Chromosomal replication 94.2 0.18 6.1E-06 56.9 11.1 19 303-321 130-148 (440)
163 3h4m_A Proteasome-activating n 94.0 0.28 9.5E-06 51.1 11.4 21 301-321 49-69 (285)
164 3sqw_A ATP-dependent RNA helic 93.9 0.24 8.3E-06 57.6 11.7 84 329-415 286-369 (579)
165 1iqp_A RFCS; clamp loader, ext 93.9 0.29 9.9E-06 51.7 11.4 37 286-323 30-66 (327)
166 3n70_A Transport activator; si 93.8 0.041 1.4E-06 52.0 4.1 21 301-321 22-42 (145)
167 2qp9_X Vacuolar protein sortin 93.8 0.6 2E-05 50.9 13.9 22 303-324 84-105 (355)
168 1hqc_A RUVB; extended AAA-ATPa 93.7 0.44 1.5E-05 50.5 12.5 21 302-322 37-57 (324)
169 1hv8_A Putative ATP-dependent 93.7 0.16 5.5E-06 54.3 9.1 79 329-413 236-314 (367)
170 1xti_A Probable ATP-dependent 93.7 0.15 5.1E-06 55.4 8.9 80 330-415 249-328 (391)
171 3fht_A ATP-dependent RNA helic 93.6 0.17 5.8E-06 55.2 9.3 76 330-411 265-340 (412)
172 2oca_A DAR protein, ATP-depend 93.6 0.27 9.3E-06 55.9 11.1 96 316-416 332-427 (510)
173 3pey_A ATP-dependent RNA helic 93.5 0.19 6.4E-06 54.4 9.2 81 330-416 242-322 (395)
174 3uk6_A RUVB-like 2; hexameric 93.5 0.51 1.7E-05 51.0 12.7 41 284-324 50-91 (368)
175 3vfd_A Spastin; ATPase, microt 93.5 0.29 9.9E-06 54.0 10.8 20 303-322 148-167 (389)
176 1s2m_A Putative ATP-dependent 93.3 0.2 6.7E-06 54.7 9.1 77 330-412 257-333 (400)
177 2qz4_A Paraplegin; AAA+, SPG7, 93.3 0.44 1.5E-05 48.8 11.3 22 302-323 38-59 (262)
178 1sxj_C Activator 1 40 kDa subu 93.2 0.26 8.8E-06 53.2 9.8 38 286-324 30-67 (340)
179 4b4t_J 26S protease regulatory 93.1 0.3 1E-05 54.4 10.2 23 301-323 180-202 (405)
180 3pxi_A Negative regulator of g 93.1 0.42 1.5E-05 57.5 12.3 21 305-325 523-543 (758)
181 2qby_A CDC6 homolog 1, cell di 93.1 0.36 1.2E-05 52.0 10.7 39 284-322 26-64 (386)
182 2chq_A Replication factor C sm 93.1 0.16 5.6E-06 53.4 7.8 38 286-324 22-59 (319)
183 2l8b_A Protein TRAI, DNA helic 92.9 0.14 4.9E-06 50.8 6.4 122 281-440 34-158 (189)
184 2yjt_D ATP-dependent RNA helic 92.1 0.019 6.3E-07 55.9 0.0 77 330-412 29-105 (170)
185 3d8b_A Fidgetin-like protein 1 92.9 0.41 1.4E-05 52.2 10.9 22 302-323 116-137 (357)
186 1sxj_E Activator 1 40 kDa subu 92.8 0.38 1.3E-05 51.8 10.2 37 286-323 19-56 (354)
187 2w58_A DNAI, primosome compone 92.7 0.19 6.5E-06 49.6 7.2 55 283-337 31-88 (202)
188 3cf0_A Transitional endoplasmi 92.7 0.97 3.3E-05 47.9 13.2 21 301-321 47-67 (301)
189 2db3_A ATP-dependent RNA helic 92.7 0.43 1.5E-05 53.3 10.9 74 332-411 301-374 (434)
190 3hjh_A Transcription-repair-co 92.7 0.33 1.1E-05 55.4 9.9 93 303-402 14-118 (483)
191 1sxj_A Activator 1 95 kDa subu 92.6 0.31 1.1E-05 56.1 9.8 33 303-338 77-109 (516)
192 2j0s_A ATP-dependent RNA helic 92.6 0.27 9.3E-06 53.9 9.0 78 330-413 275-352 (410)
193 1sxj_B Activator 1 37 kDa subu 92.6 0.28 9.5E-06 51.7 8.7 38 286-324 26-63 (323)
194 2v1x_A ATP-dependent DNA helic 92.6 0.31 1.1E-05 57.1 9.8 76 330-411 266-341 (591)
195 1ojl_A Transcriptional regulat 92.6 0.24 8.3E-06 52.9 8.2 21 301-321 23-43 (304)
196 1qvr_A CLPB protein; coiled co 91.9 1.1 3.9E-05 54.6 14.1 37 288-325 177-213 (854)
197 1xwi_A SKD1 protein; VPS4B, AA 91.8 0.98 3.3E-05 48.5 12.0 20 303-322 45-64 (322)
198 1sxj_D Activator 1 41 kDa subu 91.8 0.44 1.5E-05 51.0 9.2 34 287-321 43-76 (353)
199 1oyw_A RECQ helicase, ATP-depe 91.7 0.39 1.3E-05 55.3 9.1 76 330-411 235-310 (523)
200 3hu3_A Transitional endoplasmi 91.5 1.2 4.3E-05 50.8 12.9 21 301-321 236-256 (489)
201 1z5z_A Helicase of the SNF2/RA 91.3 0.52 1.8E-05 49.6 8.8 96 312-411 93-189 (271)
202 3oiy_A Reverse gyrase helicase 91.2 0.35 1.2E-05 53.3 7.8 82 489-571 61-148 (414)
203 1w5s_A Origin recognition comp 90.5 1 3.4E-05 49.2 10.7 41 283-323 27-72 (412)
204 2zan_A Vacuolar protein sortin 90.1 1.4 4.8E-05 49.5 11.6 20 302-321 166-185 (444)
205 2z43_A DNA repair and recombin 89.9 0.39 1.3E-05 51.7 6.5 41 301-341 105-151 (324)
206 4a2p_A RIG-I, retinoic acid in 89.9 0.31 1E-05 55.6 6.0 99 312-412 369-478 (556)
207 1r6b_X CLPA protein; AAA+, N-t 89.8 0.43 1.5E-05 57.4 7.4 19 305-323 490-508 (758)
208 4b4t_H 26S protease regulatory 89.8 0.79 2.7E-05 51.9 9.0 22 301-322 241-262 (467)
209 2zr9_A Protein RECA, recombina 89.7 0.32 1.1E-05 53.1 5.7 39 302-340 60-98 (349)
210 1xp8_A RECA protein, recombina 89.6 0.32 1.1E-05 53.5 5.6 41 301-341 72-112 (366)
211 1u94_A RECA protein, recombina 89.5 0.28 9.7E-06 53.8 5.0 40 301-340 61-100 (356)
212 3tbk_A RIG-I helicase domain; 89.2 0.52 1.8E-05 53.5 7.2 97 313-411 369-476 (555)
213 2j37_W Signal recognition part 89.1 9.8 0.00034 43.5 17.6 37 303-339 101-137 (504)
214 1r6b_X CLPA protein; AAA+, N-t 89.1 1.2 4.1E-05 53.5 10.6 39 285-324 190-228 (758)
215 3eiq_A Eukaryotic initiation f 89.0 0.29 1E-05 53.4 4.7 77 330-412 279-355 (414)
216 2xxa_A Signal recognition part 88.6 1 3.4E-05 50.8 8.8 44 303-346 100-146 (433)
217 2r6a_A DNAB helicase, replicat 88.5 0.93 3.2E-05 51.1 8.6 59 289-351 192-251 (454)
218 4gl2_A Interferon-induced heli 88.5 0.26 9E-06 58.3 4.2 79 331-411 400-488 (699)
219 3hr8_A Protein RECA; alpha and 88.4 0.45 1.6E-05 52.2 5.6 43 302-344 60-102 (356)
220 2va8_A SSO2462, SKI2-type heli 87.9 1.8 6.3E-05 51.4 11.1 88 323-411 244-362 (715)
221 2qgz_A Helicase loader, putati 87.7 0.8 2.7E-05 48.9 7.0 35 303-337 152-187 (308)
222 3io5_A Recombination and repai 87.5 0.38 1.3E-05 52.0 4.2 44 301-345 27-72 (333)
223 2zj8_A DNA helicase, putative 87.3 0.89 3.1E-05 54.3 7.9 89 325-415 231-347 (720)
224 1v5w_A DMC1, meiotic recombina 87.3 1 3.5E-05 48.9 7.6 41 301-341 120-166 (343)
225 3dmq_A RNA polymerase-associat 87.2 0.96 3.3E-05 56.1 8.2 97 312-415 486-584 (968)
226 2ce7_A Cell division protein F 87.2 2.9 9.9E-05 47.6 11.6 19 303-321 49-67 (476)
227 2z0m_A 337AA long hypothetical 87.0 0.92 3.1E-05 47.7 7.0 75 329-413 218-292 (337)
228 1z63_A Helicase of the SNF2/RA 86.8 1.3 4.3E-05 50.2 8.4 100 312-415 322-422 (500)
229 2xau_A PRE-mRNA-splicing facto 86.8 0.72 2.4E-05 55.8 6.6 81 330-411 302-393 (773)
230 1n0w_A DNA repair protein RAD5 86.6 0.87 3E-05 45.8 6.2 38 302-339 23-66 (243)
231 2ffh_A Protein (FFH); SRP54, s 86.6 2.3 7.8E-05 47.7 10.1 50 303-352 98-149 (425)
232 3cmu_A Protein RECA, recombina 86.3 0.73 2.5E-05 60.8 6.7 43 301-343 1425-1467(2050)
233 4ddu_A Reverse gyrase; topoiso 86.3 2 6.7E-05 54.1 10.4 84 487-571 116-205 (1104)
234 4a2q_A RIG-I, retinoic acid in 86.3 0.83 2.8E-05 55.3 6.9 99 312-412 610-719 (797)
235 1vma_A Cell division protein F 86.1 2.8 9.5E-05 44.8 10.1 36 303-338 104-139 (306)
236 2q6t_A DNAB replication FORK h 86.0 1.5 5E-05 49.4 8.2 60 289-352 189-249 (444)
237 3fmp_B ATP-dependent RNA helic 86.0 0.15 5E-06 57.7 0.0 74 331-410 333-406 (479)
238 3mwy_W Chromo domain-containin 85.9 4 0.00014 49.4 12.6 95 313-412 554-650 (800)
239 2ykg_A Probable ATP-dependent 85.8 0.91 3.1E-05 53.6 6.8 97 313-411 378-485 (696)
240 2dr3_A UPF0273 protein PH0284; 85.8 0.55 1.9E-05 47.3 4.3 50 302-352 22-71 (247)
241 2p6r_A Afuhel308 helicase; pro 85.5 1.7 5.9E-05 51.6 9.0 88 323-411 234-346 (702)
242 1yks_A Genome polyprotein [con 85.3 0.55 1.9E-05 52.8 4.3 71 330-411 176-246 (440)
243 2gxq_A Heat resistant RNA depe 85.2 1.2 4.1E-05 43.6 6.3 78 491-572 71-154 (207)
244 2i1q_A DNA repair and recombin 84.5 1 3.5E-05 48.1 5.8 37 289-327 86-122 (322)
245 2wv9_A Flavivirin protease NS2 84.3 1.4 4.9E-05 52.3 7.4 71 329-410 408-478 (673)
246 3bh0_A DNAB-like replicative h 83.9 1.5 5.3E-05 46.8 6.9 62 289-354 57-118 (315)
247 2fwr_A DNA repair protein RAD2 83.5 0.74 2.5E-05 51.7 4.4 75 329-414 347-421 (472)
248 4a2w_A RIG-I, retinoic acid in 83.3 1.3 4.3E-05 54.8 6.6 100 313-414 611-721 (936)
249 1j8m_F SRP54, signal recogniti 83.2 3.5 0.00012 43.8 9.3 36 303-338 98-133 (297)
250 2zts_A Putative uncharacterize 82.9 0.5 1.7E-05 47.7 2.4 50 302-352 29-79 (251)
251 2v6i_A RNA helicase; membrane, 81.7 2.5 8.5E-05 47.2 7.8 69 330-409 170-238 (431)
252 1t6n_A Probable ATP-dependent 81.3 3 0.0001 41.3 7.5 79 492-573 82-169 (220)
253 1e9r_A Conjugal transfer prote 81.2 1.1 3.9E-05 49.8 4.7 43 303-345 53-95 (437)
254 3e70_C DPA, signal recognition 80.5 6.5 0.00022 42.4 10.3 37 301-337 127-163 (328)
255 1ofh_A ATP-dependent HSL prote 80.4 1.1 3.8E-05 46.7 4.1 21 302-322 49-69 (310)
256 3fho_A ATP-dependent RNA helic 80.2 0.36 1.2E-05 55.3 0.2 77 330-412 356-432 (508)
257 1fuu_A Yeast initiation factor 80.1 0.35 1.2E-05 52.4 0.0 75 331-411 259-333 (394)
258 3cf2_A TER ATPase, transitiona 80.1 1.8 6E-05 52.5 6.1 19 302-320 237-255 (806)
259 4a74_A DNA repair and recombin 78.9 1.4 4.8E-05 43.8 4.1 23 302-324 24-46 (231)
260 2w0m_A SSO2452; RECA, SSPF, un 78.8 1.2 4.3E-05 44.1 3.7 37 302-338 22-58 (235)
261 2jlq_A Serine protease subunit 78.6 3.9 0.00013 45.8 8.1 70 330-410 187-256 (451)
262 3iuy_A Probable ATP-dependent 78.3 7.1 0.00024 38.8 9.2 78 491-572 93-177 (228)
263 3rc3_A ATP-dependent RNA helic 78.3 4.9 0.00017 47.7 9.1 76 335-417 324-401 (677)
264 1ls1_A Signal recognition part 78.3 6.6 0.00023 41.5 9.3 36 303-338 98-133 (295)
265 3cmw_A Protein RECA, recombina 77.4 2.4 8.4E-05 55.2 6.5 47 301-347 1429-1475(1706)
266 1p9r_A General secretion pathw 76.9 2.7 9.2E-05 47.0 6.0 50 282-337 151-201 (418)
267 3hws_A ATP-dependent CLP prote 76.4 2 6.9E-05 46.6 4.7 22 302-323 50-71 (363)
268 3lda_A DNA repair protein RAD5 76.4 2.1 7.2E-05 47.6 4.9 39 301-339 176-220 (400)
269 3bgw_A DNAB-like replicative h 76.3 2.7 9.2E-05 47.3 5.8 61 289-353 186-246 (444)
270 1gku_B Reverse gyrase, TOP-RG; 76.2 2.4 8.1E-05 53.1 5.9 85 486-572 93-185 (1054)
271 4b4t_L 26S protease subunit RP 75.9 3.3 0.00011 46.6 6.3 24 301-324 213-236 (437)
272 2yvu_A Probable adenylyl-sulfa 75.8 2.3 7.8E-05 41.2 4.5 36 302-337 12-47 (186)
273 2cvh_A DNA repair and recombin 75.8 2 6.7E-05 42.4 4.1 35 301-338 18-52 (220)
274 4b4t_M 26S protease regulatory 75.6 2.8 9.4E-05 47.2 5.6 23 301-323 213-235 (434)
275 2oxc_A Probable ATP-dependent 75.4 3.4 0.00012 41.5 5.8 76 492-572 92-176 (230)
276 2r8r_A Sensor protein; KDPD, P 75.4 2.4 8.3E-05 43.4 4.7 34 304-337 7-40 (228)
277 2yhs_A FTSY, cell division pro 75.4 13 0.00043 42.5 11.0 36 302-337 292-327 (503)
278 2px0_A Flagellar biosynthesis 75.4 2.4 8.1E-05 45.1 4.8 37 302-338 104-141 (296)
279 4ag6_A VIRB4 ATPase, type IV s 75.1 2.4 8.2E-05 46.5 5.0 40 303-342 35-74 (392)
280 1vec_A ATP-dependent RNA helic 74.4 3 0.0001 40.7 5.0 77 492-572 71-156 (206)
281 2whx_A Serine protease/ntpase/ 74.3 5.1 0.00017 47.0 7.7 70 330-410 354-423 (618)
282 3fe2_A Probable ATP-dependent 74.0 5.2 0.00018 40.4 6.8 78 491-572 101-186 (242)
283 3lw7_A Adenylate kinase relate 73.8 1.3 4.4E-05 41.6 2.0 20 304-323 2-21 (179)
284 4b4t_K 26S protease regulatory 73.4 4.1 0.00014 45.7 6.3 23 301-323 204-226 (428)
285 3a8t_A Adenylate isopentenyltr 73.3 1.6 5.4E-05 47.5 2.8 21 303-323 40-60 (339)
286 2r2a_A Uncharacterized protein 73.0 2 6.7E-05 43.0 3.2 25 303-327 5-29 (199)
287 1nks_A Adenylate kinase; therm 72.8 3.7 0.00013 39.3 5.2 38 305-343 3-40 (194)
288 3foz_A TRNA delta(2)-isopenten 72.8 1.7 5.9E-05 46.7 2.9 22 303-324 10-31 (316)
289 2eyu_A Twitching motility prot 72.7 3.2 0.00011 43.2 4.9 20 301-320 23-42 (261)
290 3bor_A Human initiation factor 72.2 4.1 0.00014 41.1 5.5 78 492-572 98-183 (237)
291 3t15_A Ribulose bisphosphate c 72.2 2.6 8.8E-05 44.5 4.1 24 301-324 34-57 (293)
292 1ny5_A Transcriptional regulat 72.0 8.9 0.0003 42.1 8.6 20 301-320 158-177 (387)
293 1qhx_A CPT, protein (chloramph 71.9 1.6 5.4E-05 41.7 2.2 20 303-322 3-22 (178)
294 3ly5_A ATP-dependent RNA helic 71.8 13 0.00044 38.1 9.3 78 491-572 125-211 (262)
295 3trf_A Shikimate kinase, SK; a 71.8 2 6.8E-05 41.4 2.9 22 303-324 5-26 (185)
296 4a1f_A DNAB helicase, replicat 71.7 4.1 0.00014 44.2 5.7 51 302-353 45-95 (338)
297 2z83_A Helicase/nucleoside tri 71.5 2.1 7.2E-05 48.2 3.4 70 330-410 189-258 (459)
298 2pl3_A Probable ATP-dependent 71.0 5.4 0.00019 39.9 6.1 77 491-572 96-181 (236)
299 2oap_1 GSPE-2, type II secreti 70.8 3.5 0.00012 47.3 5.1 33 303-336 260-292 (511)
300 2r44_A Uncharacterized protein 70.5 2.3 8E-05 45.2 3.4 33 286-321 32-64 (331)
301 3vaa_A Shikimate kinase, SK; s 69.8 2.4 8.2E-05 41.7 3.0 22 303-324 25-46 (199)
302 3pxg_A Negative regulator of g 69.5 3.3 0.00011 46.9 4.4 38 286-324 185-222 (468)
303 1gvn_B Zeta; postsegregational 69.5 3.1 0.00011 43.8 4.0 21 302-322 32-52 (287)
304 1um8_A ATP-dependent CLP prote 69.2 3.7 0.00013 44.6 4.7 22 302-323 71-92 (376)
305 2qmh_A HPR kinase/phosphorylas 69.1 2.3 7.9E-05 42.8 2.7 21 303-323 34-54 (205)
306 3h1t_A Type I site-specific re 69.1 12 0.00042 43.0 9.4 86 329-415 437-527 (590)
307 1y63_A LMAJ004144AAA protein; 68.6 2.7 9.2E-05 40.8 3.1 23 301-323 8-30 (184)
308 1aky_A Adenylate kinase; ATP:A 68.4 2.6 9E-05 42.0 3.0 23 302-324 3-25 (220)
309 1zd8_A GTP:AMP phosphotransfer 68.4 2.4 8.3E-05 42.5 2.8 22 302-323 6-27 (227)
310 3sr0_A Adenylate kinase; phosp 68.1 2.9 9.9E-05 41.9 3.2 23 304-326 1-23 (206)
311 3a4m_A L-seryl-tRNA(SEC) kinas 68.1 4 0.00014 42.1 4.4 36 303-338 4-39 (260)
312 3tau_A Guanylate kinase, GMP k 68.0 2.9 9.8E-05 41.6 3.2 20 302-321 7-26 (208)
313 2xgj_A ATP-dependent RNA helic 68.0 9.9 0.00034 47.3 8.7 85 330-417 342-461 (1010)
314 2cdn_A Adenylate kinase; phosp 68.0 2.9 0.0001 40.9 3.2 24 301-324 18-41 (201)
315 2c9o_A RUVB-like 1; hexameric 68.0 5.7 0.00019 44.6 6.0 22 302-323 62-83 (456)
316 3dzd_A Transcriptional regulat 68.0 5.1 0.00017 43.8 5.5 20 302-321 151-170 (368)
317 1cr0_A DNA primase/helicase; R 67.9 4.4 0.00015 42.3 4.8 38 301-338 33-71 (296)
318 1zu4_A FTSY; GTPase, signal re 67.7 4 0.00014 43.8 4.5 35 303-337 105-139 (320)
319 1z3i_X Similar to RAD54-like; 67.6 21 0.00071 41.9 11.0 97 312-414 396-496 (644)
320 2p5t_B PEZT; postsegregational 67.5 3 0.0001 42.8 3.3 22 301-322 30-51 (253)
321 2ze6_A Isopentenyl transferase 67.5 2.4 8.3E-05 43.7 2.6 18 305-322 3-20 (253)
322 2v3c_C SRP54, signal recogniti 67.1 3.3 0.00011 46.5 3.8 36 303-338 99-134 (432)
323 4b4t_I 26S protease regulatory 67.1 5.7 0.0002 44.5 5.6 24 301-324 214-237 (437)
324 2ehv_A Hypothetical protein PH 66.6 3.6 0.00012 41.3 3.7 23 302-324 29-51 (251)
325 3b9p_A CG5977-PA, isoform A; A 66.4 3.1 0.00011 43.4 3.2 19 303-321 54-72 (297)
326 1kht_A Adenylate kinase; phosp 66.2 3 0.0001 39.9 2.9 22 303-324 3-24 (192)
327 3fb4_A Adenylate kinase; psych 66.2 2.8 9.7E-05 41.4 2.7 21 304-324 1-21 (216)
328 3exa_A TRNA delta(2)-isopenten 66.2 2.7 9.2E-05 45.3 2.7 21 304-324 4-24 (322)
329 3nbx_X ATPase RAVA; AAA+ ATPas 66.2 3.1 0.00011 47.6 3.4 19 303-321 41-59 (500)
330 1kgd_A CASK, peripheral plasma 66.1 3.2 0.00011 40.1 3.0 19 303-321 5-23 (180)
331 1wrb_A DJVLGB; RNA helicase, D 66.1 7.1 0.00024 39.5 5.8 77 492-572 100-184 (253)
332 2pez_A Bifunctional 3'-phospho 66.0 5 0.00017 38.4 4.4 20 302-321 4-23 (179)
333 3dkp_A Probable ATP-dependent 66.0 5.9 0.0002 39.9 5.1 79 491-572 97-185 (245)
334 1nn5_A Similar to deoxythymidy 65.9 5.6 0.00019 38.9 4.8 34 302-335 8-41 (215)
335 3dl0_A Adenylate kinase; phosp 65.8 2.9 0.0001 41.4 2.7 20 304-323 1-20 (216)
336 1tue_A Replication protein E1; 65.7 4.4 0.00015 41.0 4.0 33 287-322 45-77 (212)
337 1ly1_A Polynucleotide kinase; 65.7 2.8 9.6E-05 39.8 2.5 20 304-323 3-22 (181)
338 1rj9_A FTSY, signal recognitio 65.6 5.7 0.0002 42.3 5.1 37 302-338 101-137 (304)
339 3ber_A Probable ATP-dependent 65.5 8 0.00027 39.4 6.1 77 492-572 111-196 (249)
340 3crm_A TRNA delta(2)-isopenten 65.5 2.7 9.2E-05 45.4 2.5 21 304-324 6-26 (323)
341 3pxi_A Negative regulator of g 65.3 4.2 0.00014 48.8 4.4 39 286-325 185-223 (758)
342 1lv7_A FTSH; alpha/beta domain 65.0 3.5 0.00012 42.1 3.2 19 303-321 45-63 (257)
343 2rhm_A Putative kinase; P-loop 65.0 3.1 0.00011 40.1 2.7 22 302-323 4-25 (193)
344 1xjc_A MOBB protein homolog; s 64.9 5.4 0.00018 38.8 4.3 34 305-338 6-39 (169)
345 3u4q_B ATP-dependent helicase/ 64.8 3.8 0.00013 51.8 4.1 62 306-368 4-70 (1166)
346 3cm0_A Adenylate kinase; ATP-b 64.7 2.7 9.2E-05 40.4 2.1 22 303-324 4-25 (186)
347 1nlf_A Regulatory protein REPA 64.6 7.2 0.00025 40.4 5.6 25 302-326 29-53 (279)
348 1zak_A Adenylate kinase; ATP:A 64.6 3.5 0.00012 41.1 3.1 23 302-324 4-26 (222)
349 2qor_A Guanylate kinase; phosp 64.5 3.6 0.00012 40.6 3.1 21 302-322 11-31 (204)
350 3iij_A Coilin-interacting nucl 64.5 3.8 0.00013 39.2 3.2 22 303-324 11-32 (180)
351 2j41_A Guanylate kinase; GMP, 64.4 3.7 0.00013 40.0 3.2 20 302-321 5-24 (207)
352 3uie_A Adenylyl-sulfate kinase 64.3 5.7 0.00019 38.9 4.5 23 301-323 23-45 (200)
353 2pbr_A DTMP kinase, thymidylat 64.2 5.8 0.0002 38.0 4.5 32 305-336 2-33 (195)
354 2ewv_A Twitching motility prot 64.1 4.5 0.00015 44.3 4.1 19 302-320 135-153 (372)
355 3kb2_A SPBC2 prophage-derived 64.0 3.4 0.00012 38.8 2.7 19 305-323 3-21 (173)
356 1zp6_A Hypothetical protein AT 63.9 3.4 0.00012 39.8 2.8 20 301-320 7-26 (191)
357 1kag_A SKI, shikimate kinase I 63.5 3.7 0.00013 38.8 2.9 19 303-321 4-22 (173)
358 1tev_A UMP-CMP kinase; ploop, 63.3 3.3 0.00011 39.8 2.5 21 303-323 3-23 (196)
359 4eun_A Thermoresistant glucoki 63.2 3.9 0.00013 40.2 3.0 21 301-321 27-47 (200)
360 2z0h_A DTMP kinase, thymidylat 63.1 6.5 0.00022 37.8 4.7 31 305-335 2-32 (197)
361 2c95_A Adenylate kinase 1; tra 62.9 3.9 0.00013 39.4 3.0 23 302-324 8-30 (196)
362 1q57_A DNA primase/helicase; d 62.9 4.4 0.00015 46.1 3.8 60 289-352 231-291 (503)
363 2pt5_A Shikimate kinase, SK; a 62.3 3.9 0.00013 38.5 2.7 20 304-323 1-20 (168)
364 2vli_A Antibiotic resistance p 62.0 3.9 0.00013 39.0 2.7 21 303-323 5-25 (183)
365 3d3q_A TRNA delta(2)-isopenten 61.9 3.5 0.00012 44.8 2.6 20 305-324 9-28 (340)
366 1qvr_A CLPB protein; coiled co 61.8 4.1 0.00014 49.6 3.5 21 304-324 589-609 (854)
367 3tlx_A Adenylate kinase 2; str 61.8 3.8 0.00013 41.9 2.7 24 301-324 27-50 (243)
368 1m7g_A Adenylylsulfate kinase; 61.7 4.8 0.00016 39.8 3.4 22 301-322 23-44 (211)
369 1g8p_A Magnesium-chelatase 38 61.7 4 0.00014 43.4 3.0 19 303-321 45-63 (350)
370 3l9o_A ATP-dependent RNA helic 61.6 8.6 0.00029 48.3 6.4 80 330-410 440-553 (1108)
371 1g41_A Heat shock protein HSLU 61.6 5.3 0.00018 45.0 4.1 20 302-321 49-68 (444)
372 2wwf_A Thymidilate kinase, put 61.5 7.1 0.00024 38.1 4.6 23 302-324 9-31 (212)
373 1rz3_A Hypothetical protein rb 61.4 11 0.00038 36.9 6.1 20 302-321 21-40 (201)
374 3p32_A Probable GTPase RV1496/ 61.1 13 0.00046 40.0 7.2 37 302-338 78-114 (355)
375 1e4v_A Adenylate kinase; trans 61.1 3.9 0.00013 40.5 2.6 21 304-324 1-21 (214)
376 2v54_A DTMP kinase, thymidylat 61.0 4.7 0.00016 39.2 3.2 22 302-323 3-24 (204)
377 3tr0_A Guanylate kinase, GMP k 61.0 4.7 0.00016 39.2 3.2 18 303-320 7-24 (205)
378 1w36_B RECB, exodeoxyribonucle 60.9 11 0.00039 47.5 7.4 54 304-357 17-82 (1180)
379 1ak2_A Adenylate kinase isoenz 60.9 4.6 0.00016 40.7 3.2 24 302-325 15-38 (233)
380 1qde_A EIF4A, translation init 60.7 6.4 0.00022 38.9 4.2 76 492-572 82-165 (224)
381 3t61_A Gluconokinase; PSI-biol 60.6 5 0.00017 39.2 3.3 21 303-323 18-38 (202)
382 4a4z_A Antiviral helicase SKI2 60.5 17 0.00057 45.2 8.7 84 330-416 335-453 (997)
383 3jvv_A Twitching mobility prot 60.4 5.9 0.0002 43.2 4.1 18 303-320 123-140 (356)
384 3b9q_A Chloroplast SRP recepto 60.3 6.7 0.00023 41.7 4.5 36 302-338 99-135 (302)
385 2iyv_A Shikimate kinase, SK; t 60.2 4.6 0.00016 38.7 2.9 21 304-324 3-23 (184)
386 1knq_A Gluconate kinase; ALFA/ 59.9 3.7 0.00013 39.1 2.1 19 303-321 8-26 (175)
387 2r62_A Cell division protease 59.7 3.3 0.00011 42.4 1.9 21 303-323 44-64 (268)
388 2plr_A DTMP kinase, probable t 58.9 11 0.00037 36.6 5.4 22 303-324 4-25 (213)
389 1c9k_A COBU, adenosylcobinamid 58.8 3.6 0.00012 40.6 1.8 33 306-342 2-34 (180)
390 1in4_A RUVB, holliday junction 58.8 6.5 0.00022 42.1 4.1 19 303-321 51-69 (334)
391 2bwj_A Adenylate kinase 5; pho 58.6 4.8 0.00016 38.9 2.7 22 303-324 12-33 (199)
392 3be4_A Adenylate kinase; malar 58.5 4.3 0.00015 40.4 2.4 23 302-324 4-26 (217)
393 1lvg_A Guanylate kinase, GMP k 58.3 4.9 0.00017 39.6 2.7 18 303-320 4-21 (198)
394 3cmu_A Protein RECA, recombina 58.3 6.6 0.00023 52.0 4.6 47 301-348 1079-1125(2050)
395 2jaq_A Deoxyguanosine kinase; 57.9 5 0.00017 38.8 2.7 20 304-323 1-20 (205)
396 3cmw_A Protein RECA, recombina 57.7 6.7 0.00023 51.2 4.5 40 301-340 32-71 (1706)
397 1ukz_A Uridylate kinase; trans 57.5 5.1 0.00018 39.1 2.8 20 303-322 15-34 (203)
398 3c8u_A Fructokinase; YP_612366 57.3 8.4 0.00029 38.0 4.3 20 301-320 20-39 (208)
399 3kjh_A CO dehydrogenase/acetyl 57.2 6.6 0.00023 39.2 3.6 33 305-337 2-34 (254)
400 1via_A Shikimate kinase; struc 56.7 5.5 0.00019 38.0 2.8 20 305-324 6-25 (175)
401 3eph_A TRNA isopentenyltransfe 56.5 5.5 0.00019 44.3 3.0 20 305-324 4-23 (409)
402 1qf9_A UMP/CMP kinase, protein 56.5 5 0.00017 38.4 2.4 22 303-324 6-27 (194)
403 1ex7_A Guanylate kinase; subst 56.4 4.4 0.00015 40.0 2.1 17 304-320 2-18 (186)
404 1uf9_A TT1252 protein; P-loop, 56.0 5.6 0.00019 38.5 2.7 22 302-323 7-28 (203)
405 1ixz_A ATP-dependent metallopr 55.7 5.8 0.0002 40.3 2.9 18 303-320 49-66 (254)
406 1e6c_A Shikimate kinase; phosp 55.7 5.9 0.0002 37.4 2.7 21 304-324 3-23 (173)
407 2og2_A Putative signal recogni 55.5 8.7 0.0003 42.0 4.4 37 302-338 156-192 (359)
408 3ney_A 55 kDa erythrocyte memb 55.4 6.3 0.00021 39.3 3.0 20 302-321 18-37 (197)
409 2x8a_A Nuclear valosin-contain 54.8 9.3 0.00032 39.8 4.3 18 303-320 44-61 (274)
410 1zuh_A Shikimate kinase; alpha 54.7 6.2 0.00021 37.2 2.7 21 304-324 8-28 (168)
411 3cio_A ETK, tyrosine-protein k 54.6 21 0.00071 37.6 7.1 35 303-337 104-139 (299)
412 4akg_A Glutathione S-transfera 54.4 16 0.00054 50.0 7.4 62 276-340 899-963 (2695)
413 3a00_A Guanylate kinase, GMP k 54.1 6.7 0.00023 38.0 2.9 16 305-320 3-18 (186)
414 1gtv_A TMK, thymidylate kinase 54.1 5.1 0.00017 39.3 2.0 19 305-323 2-20 (214)
415 2xb4_A Adenylate kinase; ATP-b 53.9 6.2 0.00021 39.5 2.7 21 304-324 1-21 (223)
416 3umf_A Adenylate kinase; rossm 53.9 7.3 0.00025 39.4 3.2 24 302-325 28-51 (217)
417 3o8b_A HCV NS3 protease/helica 53.9 16 0.00055 43.2 6.6 67 330-410 395-461 (666)
418 1nkt_A Preprotein translocase 53.6 20 0.00068 43.7 7.3 59 329-394 458-516 (922)
419 1cke_A CK, MSSA, protein (cyti 53.5 6.6 0.00023 38.9 2.8 21 303-323 5-25 (227)
420 2v9p_A Replication protein E1; 53.2 8.9 0.0003 40.9 3.9 46 288-339 114-159 (305)
421 2gza_A Type IV secretion syste 53.0 6.6 0.00022 42.8 2.9 19 302-320 174-192 (361)
422 4gp7_A Metallophosphoesterase; 52.9 4.6 0.00016 38.7 1.5 19 303-321 9-27 (171)
423 3b85_A Phosphate starvation-in 52.8 14 0.00049 36.8 5.2 31 283-320 9-39 (208)
424 1odf_A YGR205W, hypothetical 3 52.3 11 0.00038 39.7 4.5 20 301-320 29-48 (290)
425 2woo_A ATPase GET3; tail-ancho 52.3 11 0.00037 40.4 4.5 34 304-337 20-53 (329)
426 4edh_A DTMP kinase, thymidylat 51.9 12 0.00042 37.4 4.6 38 303-340 6-44 (213)
427 3zq6_A Putative arsenical pump 51.9 10 0.00036 40.4 4.2 34 305-338 16-49 (324)
428 2vhj_A Ntpase P4, P4; non- hyd 51.8 2.7 9.2E-05 45.5 -0.4 24 303-326 123-146 (331)
429 2qt1_A Nicotinamide riboside k 51.6 7.2 0.00025 38.2 2.7 19 303-321 21-39 (207)
430 1q0u_A Bstdead; DEAD protein, 51.6 6 0.00021 39.1 2.2 77 492-572 72-160 (219)
431 1byi_A Dethiobiotin synthase; 51.6 13 0.00043 36.8 4.6 33 307-339 6-38 (224)
432 2w00_A HSDR, R.ECOR124I; ATP-b 51.3 34 0.0012 42.6 9.2 82 331-413 537-675 (1038)
433 1f2t_A RAD50 ABC-ATPase; DNA d 51.0 7.9 0.00027 36.4 2.8 16 305-320 25-40 (149)
434 1np6_A Molybdopterin-guanine d 51.0 13 0.00044 36.2 4.3 17 305-321 8-24 (174)
435 1pzn_A RAD51, DNA repair and r 50.8 8.9 0.0003 41.5 3.5 48 289-338 119-172 (349)
436 1u0j_A DNA replication protein 50.7 15 0.00052 38.4 5.1 19 303-321 104-122 (267)
437 1iy2_A ATP-dependent metallopr 50.6 7.7 0.00026 40.1 2.9 17 304-320 74-90 (278)
438 3bs4_A Uncharacterized protein 50.4 11 0.00039 39.2 4.1 52 301-353 19-70 (260)
439 1ye8_A Protein THEP1, hypothet 50.4 7.8 0.00027 37.7 2.7 17 304-320 1-17 (178)
440 1tf5_A Preprotein translocase 50.1 28 0.00094 42.2 7.8 80 329-416 430-517 (844)
441 4eaq_A DTMP kinase, thymidylat 50.0 13 0.00043 37.7 4.3 34 302-336 25-58 (229)
442 3bfv_A CAPA1, CAPB2, membrane 49.9 27 0.00091 36.2 6.9 33 305-337 84-117 (271)
443 1nij_A Hypothetical protein YJ 49.5 8.8 0.0003 40.9 3.2 33 306-340 7-39 (318)
444 1z6g_A Guanylate kinase; struc 49.5 8.9 0.00031 38.3 3.1 19 302-320 22-40 (218)
445 1yrb_A ATP(GTP)binding protein 49.4 12 0.00042 37.8 4.2 35 303-338 14-48 (262)
446 2bdt_A BH3686; alpha-beta prot 49.3 8 0.00027 37.2 2.6 18 305-322 4-21 (189)
447 2pt7_A CAG-ALFA; ATPase, prote 49.2 6.5 0.00022 42.3 2.1 17 303-319 171-187 (330)
448 3k1j_A LON protease, ATP-depen 49.1 11 0.00039 43.8 4.3 33 286-321 46-78 (604)
449 1tf7_A KAIC; homohexamer, hexa 49.0 12 0.00041 42.8 4.4 39 302-340 280-318 (525)
450 1vht_A Dephospho-COA kinase; s 48.9 6.9 0.00024 38.7 2.1 20 303-322 4-23 (218)
451 2bbw_A Adenylate kinase 4, AK4 48.7 9.1 0.00031 38.7 3.0 19 303-321 27-45 (246)
452 2if2_A Dephospho-COA kinase; a 48.6 8.3 0.00029 37.5 2.6 17 305-321 3-19 (204)
453 1ihu_A Arsenical pump-driving 48.4 14 0.00048 42.8 4.9 36 303-338 8-43 (589)
454 3asz_A Uridine kinase; cytidin 48.3 8.3 0.00028 37.8 2.6 19 302-320 5-23 (211)
455 3vkg_A Dynein heavy chain, cyt 48.1 23 0.00077 49.2 7.3 41 277-320 883-923 (3245)
456 3ug7_A Arsenical pump-driving 47.5 13 0.00046 40.1 4.3 33 306-338 29-61 (349)
457 3fmo_B ATP-dependent RNA helic 47.4 17 0.00057 38.3 4.9 75 492-573 162-246 (300)
458 3lnc_A Guanylate kinase, GMP k 47.2 7.1 0.00024 39.1 1.9 19 302-320 26-44 (231)
459 1hyq_A MIND, cell division inh 45.7 16 0.00056 37.0 4.4 31 307-337 7-37 (263)
460 2f6r_A COA synthase, bifunctio 45.0 8.1 0.00028 40.4 2.0 22 303-324 75-96 (281)
461 1p5z_B DCK, deoxycytidine kina 44.9 8.2 0.00028 39.6 2.0 20 301-320 22-41 (263)
462 1g3q_A MIND ATPase, cell divis 44.9 15 0.00051 36.5 3.9 32 307-338 7-38 (237)
463 3la6_A Tyrosine-protein kinase 44.7 38 0.0013 35.4 7.2 34 304-337 93-127 (286)
464 1s96_A Guanylate kinase, GMP k 44.3 12 0.00041 37.7 3.0 20 301-320 14-33 (219)
465 2ph1_A Nucleotide-binding prot 44.1 15 0.00053 37.4 3.9 30 308-337 24-53 (262)
466 3of5_A Dethiobiotin synthetase 44.0 20 0.00069 36.2 4.7 34 306-339 7-41 (228)
467 4e22_A Cytidylate kinase; P-lo 44.0 12 0.00041 38.2 3.1 22 302-323 26-47 (252)
468 3iqw_A Tail-anchored protein t 43.9 18 0.0006 39.0 4.5 35 304-338 17-51 (334)
469 1znw_A Guanylate kinase, GMP k 43.8 12 0.00042 36.7 3.0 19 302-320 19-37 (207)
470 3end_A Light-independent proto 43.4 18 0.00061 37.8 4.4 35 303-337 41-75 (307)
471 3k4h_A Putative transcriptiona 43.4 2.6E+02 0.0088 27.8 13.3 42 474-515 172-214 (292)
472 1ry6_A Internal kinesin; kines 43.3 11 0.00037 41.3 2.6 16 305-320 87-102 (360)
473 3auy_A DNA double-strand break 43.2 11 0.00037 41.1 2.7 17 304-320 26-42 (371)
474 1sky_E F1-ATPase, F1-ATP synth 43.2 1E+02 0.0035 34.8 10.7 34 288-325 140-173 (473)
475 3r20_A Cytidylate kinase; stru 43.2 12 0.00041 38.3 2.9 22 303-324 9-30 (233)
476 3qf7_A RAD50; ABC-ATPase, ATPa 43.2 14 0.00048 40.2 3.6 16 305-320 25-40 (365)
477 1jjv_A Dephospho-COA kinase; P 43.1 11 0.00039 36.7 2.6 17 305-321 4-20 (206)
478 3l6u_A ABC-type sugar transpor 43.0 2.5E+02 0.0084 28.0 13.1 43 473-515 174-217 (293)
479 3kta_A Chromosome segregation 42.9 12 0.00041 35.7 2.7 16 305-320 28-43 (182)
480 4dzz_A Plasmid partitioning pr 42.8 15 0.0005 35.6 3.3 30 309-338 8-37 (206)
481 3v9p_A DTMP kinase, thymidylat 42.6 17 0.00057 36.9 3.9 23 302-324 24-46 (227)
482 3q9l_A Septum site-determining 42.6 17 0.00058 36.6 3.9 31 307-337 7-37 (260)
483 2woj_A ATPase GET3; tail-ancho 42.5 21 0.00072 38.7 4.8 35 304-338 19-55 (354)
484 3qks_A DNA double-strand break 42.5 12 0.00042 36.9 2.8 17 304-320 24-40 (203)
485 3zvl_A Bifunctional polynucleo 41.8 43 0.0015 37.0 7.3 22 301-322 256-277 (416)
486 3nwj_A ATSK2; P loop, shikimat 41.7 14 0.00046 38.2 3.0 22 303-324 48-69 (250)
487 1ltq_A Polynucleotide kinase; 41.5 12 0.0004 39.0 2.5 20 304-323 3-22 (301)
488 3io3_A DEHA2D07832P; chaperone 41.4 24 0.00082 38.2 5.1 36 303-338 18-55 (348)
489 3lv8_A DTMP kinase, thymidylat 41.3 23 0.0008 36.1 4.7 31 303-333 27-57 (236)
490 1uj2_A Uridine-cytidine kinase 41.3 12 0.00043 38.0 2.7 20 302-321 21-40 (252)
491 3b6e_A Interferon-induced heli 41.0 14 0.00047 35.9 2.8 78 492-573 82-173 (216)
492 1bg2_A Kinesin; motor protein, 40.9 13 0.00045 39.9 2.9 39 281-320 53-95 (325)
493 3ice_A Transcription terminati 40.9 78 0.0027 35.1 9.0 33 286-322 161-193 (422)
494 2h92_A Cytidylate kinase; ross 40.8 14 0.00048 36.3 2.9 20 303-322 3-22 (219)
495 3m9w_A D-xylose-binding peripl 40.5 1.7E+02 0.0058 29.7 11.5 41 475-515 168-210 (313)
496 1lkx_A Myosin IE heavy chain; 40.4 17 0.00059 43.2 4.0 22 299-320 90-111 (697)
497 2y65_A Kinesin, kinesin heavy 40.0 14 0.00047 40.5 2.9 39 281-320 60-102 (365)
498 2v26_A Myosin VI; calmodulin-b 40.0 23 0.00077 42.8 4.9 29 292-320 129-157 (784)
499 1x88_A Kinesin-like protein KI 39.9 12 0.00042 40.8 2.4 39 281-320 64-106 (359)
500 1cp2_A CP2, nitrogenase iron p 39.8 23 0.00077 36.0 4.4 32 306-337 4-35 (269)
No 1
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.3e-97 Score=935.05 Aligned_cols=698 Identities=33% Similarity=0.590 Sum_probs=606.1
Q ss_pred HHHHHHHHHHhhhhhhcCccCCCCCCCCCCCCCCCCCCCcceeeeCCCCCCCCCcccccccccEEEeeEEEeecCCCCCc
Q 003260 105 YIQLVKEQQQKGLQKLKGKKSGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVP 184 (835)
Q Consensus 105 ~~~~~~~~~~~g~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vvh~~~Gig~~~g~~~~~~~~~~~~ 184 (835)
-..++.|.+.+|.++.+++|+++...+ .-....+..+|++||||||++||||+|.|++....+ |..
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~Gd~vvH~~hGig~~~gl~~~~~~--g~~ 508 (1151)
T 2eyq_A 443 NLALICESDLLGERVARRRQDSRRTIN------------PDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAG--GIT 508 (1151)
T ss_dssp TEEEEEHHHHSSCCCCCCCCCGGGBCC------------HHHHHHTCTTCCTTCEEEETTTEEEEEEEEEEEESS--SCE
T ss_pred CEEEEECchhhcccccchhhccccccc------------chhhccchhhCCCCCeEeecccceeEECcEEEEecC--CCC
Confidence 345677889999766332222111000 112224778999999999999999999999953322 678
Q ss_pred cceEEEEEcCCC-cccChhhHhHHHhhhcCCCCCCchHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 003260 185 IEYVFIEYADGM-AKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263 (835)
Q Consensus 185 ~~~~~~~y~~~~-~~~~~~~~~~~~~~y~~~~~~~~~~~l~~l~~~~~w~~~k~~~~~~~~~~~~~l~~l~~~r~~~~~~ 263 (835)
+||+.|+|++++ +++|+++. .++++|.+.++. .+++++|+. ..|++.+.+++..+.+.+.+++++|+.|....++
T Consensus 509 ~~~~~~~y~~~~~l~vp~~~l-~~~~~y~g~~~~--~~~l~~l~~-~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~g~ 584 (1151)
T 2eyq_A 509 GEYLMLTYANDAKLYVPVSSL-HLISRYAGGAEE--NAPLHKLGG-DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGF 584 (1151)
T ss_dssp EEEEEEECGGGCEEEEEGGGG-GGEEECCCSCSS--SCCCCCTTC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred cceEEEEecCCCceeeeHHHh-hhHhcccCCCCC--CCchhhcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 999999999986 78999996 579999776542 578999985 8999999999999999999999999999999999
Q ss_pred CCCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHH
Q 003260 264 PYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIV 342 (835)
Q Consensus 264 ~~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~ 342 (835)
++++++ ++..|.+.|+|++||+|.+|++.++++|. ++++||+|+|||||||||++|+.+++..+..+++++|++||++
T Consensus 585 ~~~~~~~~~~~~~~~f~~~~t~~Q~~ai~~il~~~~-~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~ 663 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMC-QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 663 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHH-SSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred CCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHh-cCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHH
Confidence 998887 89999999999999999999999999884 4567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhH
Q 003260 343 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK 422 (835)
Q Consensus 343 LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~ 422 (835)
||.||+++|.++|..+ ++++..++++.+..++...+..+..|.++|+||||++|.+.+.++++++|||||+|+|+..+.
T Consensus 664 La~Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH~~g~~~~ 742 (1151)
T 2eyq_A 664 LAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHK 742 (1151)
T ss_dssp HHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSCHHHH
T ss_pred HHHHHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEEechHhcChHHH
Confidence 9999999999988877 589999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecCc
Q 003260 423 EKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502 (835)
Q Consensus 423 e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~~~~~~~~l~~~i~~~l~~ggqvlVf~n~v 502 (835)
+.+..+..+.++++|||||+|+++.+...++.+.+++..+|..+.++.+++.......+.+.+.+.+.++++++||||++
T Consensus 743 ~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i~~~il~~l~~g~qvlvf~~~v 822 (1151)
T 2eyq_A 743 ERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDV 822 (1151)
T ss_dssp HHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHHHHHHHHHHTTTCEEEEECCCS
T ss_pred HHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 99999989999999999999999999999999999999999999999999888888888999999999999999999999
Q ss_pred cChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHH
Q 003260 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQL 582 (835)
Q Consensus 503 ~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr 582 (835)
++++.+++.|++.+|++++.++||+|++.+|++++++|++|+++|||||+++++|||+|++++||+++++.|++++|+||
T Consensus 823 ~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr 902 (1151)
T 2eyq_A 823 ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 902 (1151)
T ss_dssp SCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred hcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHHHHHHHH
Q 003260 583 RGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML 662 (835)
Q Consensus 583 ~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dl~irg~g~~lg~~q~g~~~~vg~~~y~~~l 662 (835)
+||+||.|+.|+||+++++++..+..+.+|+.++++.+++++||.++++|++|||+|+++|.+|+|++..+||++|.++|
T Consensus 903 ~GRvgR~g~~g~~~ll~~~~~~l~~~~~~rl~~i~~~~~lg~gf~ia~~dl~irg~g~~lg~~q~g~i~~~~~~~~~~~l 982 (1151)
T 2eyq_A 903 RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELL 982 (1151)
T ss_dssp HTTCCBTTBCEEEEEEECCGGGSCHHHHHHHHHHTTCCSBSHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHH
T ss_pred HhccCcCCCceEEEEEECCccccCHHHHHHHHHHHHhhccCCcchHHHHHhccCCCcccCCccccCChhhccHHHHHHHH
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccccc-cc--CcceEEeeecCCCCccccccccCCchHHHHHHHhhhhcCHHHHHHHHHHHHHhcCCChHHH
Q 003260 663 FESLSKVDEHCVIS-VP--YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739 (835)
Q Consensus 663 ~~ai~~~~~~~~~~-~~--~g~~~~~l~idp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~dr~G~~p~~~ 739 (835)
.+++..+++++... .. ...+.+++++++++|+.||++...|+++|++++.+. +.+++.++..||.||||++|.++
T Consensus 983 ~~a~~~~~~~~~~~~~~~~~~~~~i~l~~~~~ip~~yi~~~~~rl~~y~~l~~~~--~~~~~~~~~~el~drfg~~p~~~ 1060 (1151)
T 2eyq_A 983 ENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAK--TENELEEIKVELIDRFGLLPDPA 1060 (1151)
T ss_dssp HHHHHHHHHTCCSCCGGGSCCCCCEECSSCCSCCTTTSCCHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHCSCCHHH
T ss_pred HHHHHHHHcCCCCCcccccccCeeEecCCcCcCChhhcCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCCcHHH
Confidence 99999887432211 11 125689999999999999999999999999999976 55789999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCccEEEecCcEEEEEecCCHH-HHHHHHHhhcccccccceeeeCCeeEEEEEecCC-cHHHHHH
Q 003260 740 EILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKK-VFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELP-REQLLNW 817 (835)
Q Consensus 740 ~~l~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 817 (835)
++||.+++||++|+++||.+|...++.+.+.+..... -...+...+...+ ..+++.++. ++.+....+ ..+.+++
T Consensus 1061 ~~l~~~~~~k~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~ 1137 (1151)
T 2eyq_A 1061 RTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQP--QHYRLDGPT-RLKFIQDLSERKTRIEW 1137 (1151)
T ss_dssp HHHHHHHHHHHHHHHHCCSCEEECSSEEEEECCSSCCCCHHHHHHHHHHCG--GGEEEETTT-EEEEECCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCcEEEecCCeEEEEEecCCCCCHHHHHHHHHhcC--CcEEECCCc-eEEEEecCCCHHHHHHH
Confidence 9999999999999999999999999997776642211 0112222232222 234444222 233333322 3455899
Q ss_pred HHHHHHHHHh
Q 003260 818 IFQCLAELYA 827 (835)
Q Consensus 818 ~~~~~~~~~~ 827 (835)
+..++..+..
T Consensus 1138 ~~~~~~~~~~ 1147 (1151)
T 2eyq_A 1138 VRQFMRELEE 1147 (1151)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 2
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-57 Score=548.13 Aligned_cols=430 Identities=36% Similarity=0.581 Sum_probs=356.0
Q ss_pred hHHHhccCCCcHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHccCCCCCCCC-hHHHHHHHhCCCCCCHhHHHHHHHHH
Q 003260 220 PRTLSKLSDTTAWERRK-TKGKVAIQKMVVDLMEL---YLHRLKQKRPPYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVE 294 (835)
Q Consensus 220 ~~~l~~l~~~~~w~~~k-~~~~~~~~~~~~~l~~l---~~~r~~~~~~~~~~~-~l~~~~~~~f~~~ptp~Q~~AI~~il 294 (835)
...|..+|.+......+ .+.+..++|...-.+.+ +..+....+.+++.+ .+.+.|.+.++|+|||+|.+|++.++
T Consensus 302 ~~al~~iH~P~~~~~~~~a~~rl~~eEl~~~ql~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~lpf~lt~~Q~~ai~~I~ 381 (780)
T 1gm5_A 302 KDAYYGMHFPKTFYHLEKARERLAYEELFVLQLAFQKIRKEREKHGGIPKKIEGKLAEEFIKSLPFKLTNAQKRAHQEIR 381 (780)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCTHHHHHHHHHSSSCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 35667777664443332 45566677766554444 333344556666654 48999999999999999999999999
Q ss_pred HhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHH
Q 003260 295 RDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAE 374 (835)
Q Consensus 295 ~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e 374 (835)
+++. ++.+|++|++||||||||++|+++++..+..|.+++|++||++||.|+++++.+.+..+ +++++.++|+.+..+
T Consensus 382 ~~l~-~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~-gi~v~~l~G~~~~~~ 459 (780)
T 1gm5_A 382 NDMI-SEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKF-NIHVALLIGATTPSE 459 (780)
T ss_dssp HHHH-SSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCS-SCCEEECCSSSCHHH
T ss_pred hhcc-ccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhc-CceEEEEeCCCCHHH
Confidence 9884 56678999999999999999999999998889999999999999999999999987665 799999999999999
Q ss_pred HHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCC
Q 003260 375 KEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 454 (835)
Q Consensus 375 ~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~ 454 (835)
+...+..+.+|+++|+||||+.+.+.+.+.++++|||||+|+||+.++..+.....+.++++|||||+|+++.+...+..
T Consensus 460 r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr~g~~qr~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~ 539 (780)
T 1gm5_A 460 KEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQREALMNKGKMVDTLVMSATPIPRSMALAFYGDL 539 (780)
T ss_dssp HHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC-----CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCS
T ss_pred HHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecccchhhHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCc
Confidence 88899999999999999999999988999999999999999999988776766667899999999999999998888888
Q ss_pred CcceecCCCCCccceeEEeccc-CHHHHHHHHHHHHhcCCeEEEEecCccC--------hHHHHHHHHh-hCCCCeEEEE
Q 003260 455 DASLISTPPPERLPIKTHLSAF-SKEKVISAIKYELDRGGQVFYVLPRIKG--------LEEPMDFLQQ-AFPGVDIAIA 524 (835)
Q Consensus 455 d~s~I~~~p~~r~~v~~~~~~~-~~~~l~~~i~~~l~~ggqvlVf~n~v~~--------~e~l~~~L~~-~~p~~~v~~l 524 (835)
+.+++...|..+.++.+.+... ....+.+.+.+.+..+++++||||.+++ ++.+++.|.+ .+|++++..+
T Consensus 540 ~~s~i~~~p~~r~~i~~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~l 619 (780)
T 1gm5_A 540 DVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLM 619 (780)
T ss_dssp SCEEECCCCSSCCCCEECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCC
T ss_pred ceeeeeccCCCCcceEEEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEE
Confidence 8888877777777877765543 3456778888888899999999998754 6778888888 7789999999
Q ss_pred eCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003260 525 HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 525 hg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
||+|++.+|+.++++|++|+++|||||+++++|||+|++++||++++|+|++++|+||+||+||.|+.|+||+++++.
T Consensus 620 HG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~-- 697 (780)
T 1gm5_A 620 HGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDV-- 697 (780)
T ss_dssp CSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSC--
T ss_pred eCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCC--
Confidence 999999999999999999999999999999999999999999999999989999999999999999999999999733
Q ss_pred CCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHHH
Q 003260 605 LSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDL 657 (835)
Q Consensus 605 ~~~~a~~rl~~i~~~~~l~sg~~la~~dl~irg~g~~lg~~q~g~~~~vg~~~ 657 (835)
+..+.+|+..+++.. +||.+++.|+++||.|+++|..|+|.+.-...++
T Consensus 698 -~~~~~~rl~~l~~~~---dgf~iae~dL~~Rg~gd~lG~~qsg~~~~~~~~l 746 (780)
T 1gm5_A 698 -GEEAMERLRFFTLNT---DGFKIAEYDLKTRGPGEFFGVKQHGLSGFKVADL 746 (780)
T ss_dssp -CHHHHHHHHHHHTCC---CSHHHHHHHHHSSCCCC----CCCSSCCSCCHHH
T ss_pred -ChHHHHHHHHHHhhh---ccchhhHhhHhccCcchhhhhhhcCCCccceehh
Confidence 577888888887643 5999999999999999999999999865333333
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.9e-44 Score=407.29 Aligned_cols=321 Identities=22% Similarity=0.293 Sum_probs=256.0
Q ss_pred CCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc--------CCCEEEEE
Q 003260 267 KNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--------AGKQAMVL 337 (835)
Q Consensus 267 ~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~--------~g~qvlVL 337 (835)
.++ +.+.+.+.++..|||+|.+||+.+++ ++|++++++||||||++|++|++..+. .+++++|+
T Consensus 63 l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~-------g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil 135 (434)
T 2db3_A 63 LRDIIIDNVNKSGYKIPTPIQKCSIPVISS-------GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIV 135 (434)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEE
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc-------CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEE
Confidence 344 67777777777899999999999874 479999999999999999999987763 25689999
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----cccCCccEEEEc
Q 003260 338 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVD 412 (835)
Q Consensus 338 vPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l~~~~l~llVID 412 (835)
+||++||.|+++++.+ +....++++..++|+.+...+.. .+..+ ++|+|+||+.|.+. +.+.++++||+|
T Consensus 136 ~PtreLa~Q~~~~~~~-~~~~~~~~~~~~~gg~~~~~~~~---~l~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlD 210 (434)
T 2db3_A 136 SPTRELAIQIFNEARK-FAFESYLKIGIVYGGTSFRHQNE---CITRG-CHVVIATPGRLLDFVDRTFITFEDTRFVVLD 210 (434)
T ss_dssp CSSHHHHHHHHHHHHH-HTTTSSCCCCEECTTSCHHHHHH---HHTTC-CSEEEECHHHHHHHHHTTSCCCTTCCEEEEE
T ss_pred ecCHHHHHHHHHHHHH-HhccCCcEEEEEECCCCHHHHHH---HhhcC-CCEEEEChHHHHHHHHhCCcccccCCeEEEc
Confidence 9999999999999997 55545788999999887665433 33444 89999999988643 457889999999
Q ss_pred Cccccch----hhHHHH-hh--hcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCC--ccceeEEecccCHHHHHH
Q 003260 413 EEQRFGV----KQKEKI-AS--FKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLSAFSKEKVIS 483 (835)
Q Consensus 413 EaHr~g~----~~~e~l-~~--l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~--r~~v~~~~~~~~~~~l~~ 483 (835)
|||++.. .+...+ .. ...+.+++++|||+++.....+...+.++..+...... ...+...+..........
T Consensus 211 Eah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 290 (434)
T 2db3_A 211 EADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRS 290 (434)
T ss_dssp THHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHH
T ss_pred cHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHH
Confidence 9999632 222333 22 25678999999999888777777777776655443221 223333333333222333
Q ss_pred HHHHHHh-cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCC
Q 003260 484 AIKYELD-RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562 (835)
Q Consensus 484 ~i~~~l~-~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~ 562 (835)
.+...+. .+.+++|||++++.++.+++.|... ++.+..+||++++.+|+.++++|++|+.+|||||+++++|+|+|+
T Consensus 291 ~l~~~l~~~~~~~lVF~~t~~~a~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~ 368 (434)
T 2db3_A 291 KLIEILSEQADGTIVFVETKRGADFLASFLSEK--EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKN 368 (434)
T ss_dssp HHHHHHHHCCTTEEEECSSHHHHHHHHHHHHHT--TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTT
T ss_pred HHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCccc
Confidence 3333332 3456999999999999999999988 889999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCC
Q 003260 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 563 v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
+++||++|.|. +..+|+||+||+||.|+.|.|++|++++
T Consensus 369 v~~VI~~d~p~-~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 369 IKHVINYDMPS-KIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp CCEEEESSCCS-SHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred CCEEEEECCCC-CHHHHHHHhcccccCCCCCEEEEEEecc
Confidence 99999999996 9999999999999999999999999855
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-42 Score=390.28 Aligned_cols=324 Identities=22% Similarity=0.267 Sum_probs=249.7
Q ss_pred CCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC--------------
Q 003260 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-------------- 330 (835)
Q Consensus 266 ~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-------------- 330 (835)
+.++ +.+.+...+...|||+|.+|++.+++ ++|+++++|||||||++|++|++..+..
T Consensus 21 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~-------~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~ 93 (417)
T 2i4i_A 21 EMGEIIMGNIELTRYTRPTPVQKHAIPIIKE-------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 93 (417)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCB
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHcc-------CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccc
Confidence 3444 67788877778999999999998864 4789999999999999999998876531
Q ss_pred -------CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc----
Q 003260 331 -------GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS---- 399 (835)
Q Consensus 331 -------g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~---- 399 (835)
+++++|++||++|+.|+++++.+. ....++++..++|+.+..+.. ..+..+ ++|+|+||+.|.+
T Consensus 94 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~---~~~~~~-~~I~v~Tp~~l~~~l~~ 168 (417)
T 2i4i_A 94 RYGRRKQYPISLVLAPTRELAVQIYEEARKF-SYRSRVRPCVVYGGADIGQQI---RDLERG-CHLLVATPGRLVDMMER 168 (417)
T ss_dssp TTBSCSBCCSEEEECSSHHHHHHHHHHHHHH-HTTSSCCEEEECSSSCHHHHH---HHHTTC-CSEEEECHHHHHHHHHT
T ss_pred ccccccCCccEEEECCcHHHHHHHHHHHHHH-hCcCCceEEEEECCCCHHHHH---HHhhCC-CCEEEEChHHHHHHHHc
Confidence 257999999999999999999974 444478999999987765533 334444 8999999998864
Q ss_pred -ccccCCccEEEEcCccccchh----hHHHHhh---hc--CCceEEEeecCCChhhHHHHHhcCCCcceecCCCC--Ccc
Q 003260 400 -RVVYNNLGLLVVDEEQRFGVK----QKEKIAS---FK--ISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP--ERL 467 (835)
Q Consensus 400 -~l~~~~l~llVIDEaHr~g~~----~~e~l~~---l~--~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~--~r~ 467 (835)
.+.+.++++|||||+|++... ....+.. +. ...+++++|||+++.........+.++..+..... ...
T Consensus 169 ~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (417)
T 2i4i_A 169 GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSE 248 (417)
T ss_dssp TSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCS
T ss_pred CCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence 245788999999999986432 2222322 11 26789999999977666555555555544433221 112
Q ss_pred ceeEEecccCHHHHHHHHHHHH---hcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCC
Q 003260 468 PIKTHLSAFSKEKVISAIKYEL---DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGA 544 (835)
Q Consensus 468 ~v~~~~~~~~~~~l~~~i~~~l---~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~ 544 (835)
.+...+...........+...+ ..+++++|||++++.++.+++.|.+. ++.+..+||+|+..+|..+++.|++|+
T Consensus 249 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~ 326 (417)
T 2i4i_A 249 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGK 326 (417)
T ss_dssp SEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred CceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC--CCCeeEecCCCCHHHHHHHHHHHHcCC
Confidence 2232222222222233333333 35689999999999999999999987 889999999999999999999999999
Q ss_pred eeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003260 545 IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 545 ~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
.+|||||+++++|+|+|++++||+++.|. +..+|+||+||+||.|+.|.|++|+++.+.
T Consensus 327 ~~vlvaT~~~~~Gidip~v~~Vi~~~~p~-s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 385 (417)
T 2i4i_A 327 SPILVATAVAARGLDISNVKHVINFDLPS-DIEEYVHRIGRTGRVGNLGLATSFFNERNI 385 (417)
T ss_dssp SCEEEECHHHHTTSCCCCEEEEEESSCCS-SHHHHHHHHTTBCC--CCEEEEEEECGGGG
T ss_pred CCEEEECChhhcCCCcccCCEEEEEcCCC-CHHHHHHhcCccccCCCCceEEEEEccccH
Confidence 99999999999999999999999999996 999999999999999999999999987754
No 5
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.9e-45 Score=425.92 Aligned_cols=387 Identities=12% Similarity=0.132 Sum_probs=281.1
Q ss_pred EEEEEcCCC-cc--cChhhHhHHHhhhcCCCCCCchHH---HhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 003260 188 VFIEYADGM-AK--LPVKQASRMLYRYNLPNETKRPRT---LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQK 261 (835)
Q Consensus 188 ~~~~y~~~~-~~--~~~~~~~~~~~~y~~~~~~~~~~~---l~~l~~~~~w~~~k~~~~~~~~~~~~~l~~l~~~r~~~~ 261 (835)
|.|+|++++ .+ +|+++. ..+++|.+.. .|. +.+++. +.|.+.+...+. ...++..+++.+..+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~----~p~~~f~~~~~~-~~w~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ 75 (510)
T 2oca_A 3 IKVHFHDFSHVRIDCEESTF-HELRDFFSFE----ADGYRFNPRFRY-GNWDGRIRLLDY-NRLLPFGLVGQIKKFCDNF 75 (510)
T ss_dssp EEEEECCSSEEEEECCHHHH-HHHHHHTEEE----CTTGGGCHHHHT-SSCCSEEESCCT-TCEEEGGGGGGHHHHHHHH
T ss_pred eeEEEecceeEEEecChhHH-HHHHHHhCEe----cCCcccChhccc-CccCceEeeccc-CCccccCcHHHHHHHHHHc
Confidence 678899886 56 899886 5689996543 244 677764 679875443333 2234445556666655544
Q ss_pred CCCCCCCh-HH-------HHHH---H--hC-----CCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHH
Q 003260 262 RPPYPKNP-AI-------AEFA---A--QF-----PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 262 ~~~~~~~~-l~-------~~~~---~--~f-----~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a 323 (835)
+..+..++ +. ..|. . .| +++|||+|.+|++.++++ +++++++|||||||++|+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~f~~w~~~~~f~~~~~~~~l~~~Q~~ai~~~~~~-------~~~ll~~~tGsGKT~~~~~~ 148 (510)
T 2oca_A 76 GYKAWIDPQINEKEELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALL 148 (510)
T ss_dssp TCCEEECGGGSCCCSCCHHHHHHHHHTCCEEETTEEECCCHHHHHHHHHHHHH-------SEEEEECCSTTTHHHHHHHH
T ss_pred CCeEEEccCCCCCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHHHHHHHHhc-------CCcEEEeCCCCCHHHHHHHH
Confidence 54332211 11 3343 3 44 569999999999999863 68999999999999999999
Q ss_pred HHHHHcCCC-EEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc--
Q 003260 324 IFCVVSAGK-QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-- 400 (835)
Q Consensus 324 ~l~~l~~g~-qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-- 400 (835)
+...+..++ +++||+||++|+.||+++|.+ +..+++..+..++++.+..++ ..+..+|+|+||+.|...
T Consensus 149 ~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~-~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~ 220 (510)
T 2oca_A 149 ARYYLENYEGKILIIVPTTALTTQMADDFVD-YRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPK 220 (510)
T ss_dssp HHHHHHHCSSEEEEEESSHHHHHHHHHHHHH-TTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCG
T ss_pred HHHHHhCCCCeEEEEECcHHHHHHHHHHHHH-hhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchh
Confidence 988775554 999999999999999999975 776767889999998765442 236689999999999865
Q ss_pred cccCCccEEEEcCccccchhhHHHH-hhhcCCceEEEeecCCChhhH-HHHHhcCCCcceecCCCCCcc------c--ee
Q 003260 401 VVYNNLGLLVVDEEQRFGVKQKEKI-ASFKISVDVLTLSATPIPRTL-YLALTGFRDASLISTPPPERL------P--IK 470 (835)
Q Consensus 401 l~~~~l~llVIDEaHr~g~~~~e~l-~~l~~~~~vL~lSATp~p~tl-~~~~~g~~d~s~I~~~p~~r~------~--v~ 470 (835)
..+.++++|||||||+++......+ ..+....++++|||||..... .+...++.+..+...++.... + +.
T Consensus 221 ~~~~~~~liIiDE~H~~~~~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 300 (510)
T 2oca_A 221 EWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKIN 300 (510)
T ss_dssp GGGGGEEEEEEETGGGCCHHHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEE
T ss_pred hhhhcCCEEEEECCcCCCcccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEE
Confidence 5678999999999999988766665 555678899999999954421 122223333344333322110 0 00
Q ss_pred EEec-------------ccC------------HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEe
Q 003260 471 THLS-------------AFS------------KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAH 525 (835)
Q Consensus 471 ~~~~-------------~~~------------~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lh 525 (835)
.... .+. ...+.+.+.+...++++.++++++++.++.+++.|.+. +.++..+|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~--~~~v~~~~ 378 (510)
T 2oca_A 301 SIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNE--YDKVYYVS 378 (510)
T ss_dssp EEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTT--CSSEEEES
T ss_pred EEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHHc--CCCeEEEE
Confidence 0000 000 11234445555555677766666689999999999987 34899999
Q ss_pred CCCCHHHHHHHHHHhhcCCeeEEEEc-CcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEe
Q 003260 526 GQQYSRQLEETMEKFAQGAIKILICT-NIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY 599 (835)
Q Consensus 526 g~m~~~ere~vl~~F~~g~~~ILVaT-~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~ 599 (835)
|+|+..+|+++++.|.+|+.+||||| +++++|+|+|++++||+++++ +++.+|+|++||+||.|+.+.+++++
T Consensus 379 g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~-~s~~~~~Q~~GR~gR~g~~~~~v~i~ 452 (510)
T 2oca_A 379 GEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGV-KSKIIVLQTIGRVLRKHGSKTIATVW 452 (510)
T ss_dssp SSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCC-CSCCHHHHHHHHHHTTTCCCCCCEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCC-CCHHHHHHHHhcccccCCCCceEEEE
Confidence 99999999999999999999999999 999999999999999999999 49999999999999999766443333
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=7.7e-42 Score=379.84 Aligned_cols=325 Identities=18% Similarity=0.155 Sum_probs=257.8
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC---CCEEEEEccc
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPT 340 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~---g~qvlVLvPt 340 (835)
++.++ +.+.+.+.+...|+|+|.+|++.+++ ++++++++|||+|||++|+.+++..+.. +.+++|++||
T Consensus 13 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 85 (391)
T 1xti_A 13 FLLKPELLRAIVDCGFEHPSEVQHECIPQAIL-------GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 85 (391)
T ss_dssp GCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTT-------TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-------CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCC
Confidence 34455 77788777666799999999998864 4789999999999999999999887653 5689999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCcc
Q 003260 341 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 341 r~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaH 415 (835)
++|+.|+++.+.+....++++++..++|+.+..... ..+..+.++|+|+||+.|.. ...+.++++||+||||
T Consensus 86 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 86 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHH---HHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999865555689999999987765543 33455678999999998853 3456889999999999
Q ss_pred ccch--hhH----HHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCc---cceeEEecccCHHHHHHHHH
Q 003260 416 RFGV--KQK----EKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER---LPIKTHLSAFSKEKVISAIK 486 (835)
Q Consensus 416 r~g~--~~~----e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r---~~v~~~~~~~~~~~l~~~i~ 486 (835)
++.. ... ..+.......+++++|||+.+.........+.++..+....... ..+...+...........+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 8743 111 22333456889999999998876666666666665554433221 22333333222222223333
Q ss_pred HHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCcc
Q 003260 487 YEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564 (835)
Q Consensus 487 ~~l--~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~ 564 (835)
..+ ..+++++|||++++.++.+++.|... ++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 243 ~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~ 320 (391)
T 1xti_A 243 DLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 320 (391)
T ss_dssp HHHHHSCCSEEEEECSCHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEE
T ss_pred HHHHhcCCCcEEEEeCcHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCC
Confidence 322 25689999999999999999999988 88999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCC
Q 003260 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 565 ~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
+||+++.|. +..+|.||+||+||.|+.|.|++++++.
T Consensus 321 ~Vi~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 357 (391)
T 1xti_A 321 IAFNYDMPE-DSDTYLHRVARAGRFGTKGLAITFVSDE 357 (391)
T ss_dssp EEEESSCCS-SHHHHHHHHCBCSSSCCCCEEEEEECSH
T ss_pred EEEEeCCCC-CHHHHHHhcccccCCCCceEEEEEEccc
Confidence 999999996 9999999999999999999999999764
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=8e-42 Score=381.93 Aligned_cols=335 Identities=21% Similarity=0.205 Sum_probs=261.1
Q ss_pred CCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC---CCEEEEEcccH
Q 003260 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTI 341 (835)
Q Consensus 266 ~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~---g~qvlVLvPtr 341 (835)
+.++ +.+.+.+.+...|+|+|.+|++.++++ .++++++++|||+|||++|+++++..+.. +.+++|++||+
T Consensus 31 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-----~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 105 (412)
T 3fht_A 31 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAE-----PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 105 (412)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSS-----SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-----CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCH
Confidence 3444 677888777779999999999999752 35799999999999999999999987754 34899999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc------ccccCCccEEEEcCcc
Q 003260 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 342 ~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~------~l~~~~l~llVIDEaH 415 (835)
+|+.|+++.+.+....++++.+....++..... .....++|+|+||+.|.+ .+.+.++++|||||+|
T Consensus 106 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah 178 (412)
T 3fht_A 106 ELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 178 (412)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHH
T ss_pred HHHHHHHHHHHHHHhhcccceEEEeecCcchhh-------hhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHH
Confidence 999999999998555556788888888654322 123457999999998854 3355789999999999
Q ss_pred ccch------hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCC--ccceeEEe-cccCHHHHHHHHH
Q 003260 416 RFGV------KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHL-SAFSKEKVISAIK 486 (835)
Q Consensus 416 r~g~------~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~--r~~v~~~~-~~~~~~~l~~~i~ 486 (835)
++.. .....+..+..+.+++++|||+.+.........+.++..+...... ...+...+ ...........+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 258 (412)
T 3fht_A 179 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALC 258 (412)
T ss_dssp HHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHH
T ss_pred HHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHH
Confidence 8632 1122334446788999999999888777777777776666543221 12222322 2223334444444
Q ss_pred HHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCcc
Q 003260 487 YELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564 (835)
Q Consensus 487 ~~l~--~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~ 564 (835)
..+. .+++++|||++++.++.+++.|... +..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 259 ~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~ 336 (412)
T 3fht_A 259 NLYGAITIAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVS 336 (412)
T ss_dssp HHHHHHSSSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEE
T ss_pred HHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCC
Confidence 4443 4689999999999999999999998 78999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCC-----CChhHHHHHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHH
Q 003260 565 TIIVQDVQQ-----FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619 (835)
Q Consensus 565 ~VIi~d~p~-----~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~ 619 (835)
+||+++.|. .+..+|+||+||+||.|+.|.|++++++. .....+..+++.
T Consensus 337 ~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-----~~~~~~~~i~~~ 391 (412)
T 3fht_A 337 VVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK-----HSMNILNRIQEH 391 (412)
T ss_dssp EEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH-----HHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcCh-----hhHHHHHHHHHH
Confidence 999999994 26789999999999999999999999753 233444455543
No 8
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.3e-42 Score=386.97 Aligned_cols=324 Identities=19% Similarity=0.206 Sum_probs=243.3
Q ss_pred CCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc---CCCEEEEEcccH
Q 003260 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPTI 341 (835)
Q Consensus 266 ~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~---~g~qvlVLvPtr 341 (835)
+.++ +.+.+.+.+...|+|+|.++++.+++ ++++++++|||||||++|+.+++..+. .+.+++|++||+
T Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~-------~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 118 (414)
T 3eiq_A 46 NLSESLLRGIYAYGFEKPSAIQQRAILPCIK-------GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTR 118 (414)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT-------TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHhHHHhC-------CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChH
Confidence 3444 66777776666999999999999874 468999999999999999999998775 467899999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----cccCCccEEEEcCccc
Q 003260 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQR 416 (835)
Q Consensus 342 ~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l~~~~l~llVIDEaHr 416 (835)
+|+.|+++.+.. +....+..+..+.++..... .+..+..+.++|+|+||+.|.+. +.+.++++||+||+|+
T Consensus 119 ~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~ 194 (414)
T 3eiq_A 119 ELAQQIQKVVMA-LGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE 194 (414)
T ss_dssp HHHHHHHHHHHH-HGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH
T ss_pred HHHHHHHHHHHH-HhcccCceEEEEECCcchHH---HHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH
Confidence 999999999998 44444788888888765544 34455557799999999987642 4567899999999998
Q ss_pred cch-----hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCc--cceeEEec-ccCHHHHHHHHHHH
Q 003260 417 FGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LPIKTHLS-AFSKEKVISAIKYE 488 (835)
Q Consensus 417 ~g~-----~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r--~~v~~~~~-~~~~~~l~~~i~~~ 488 (835)
+.. .....+..+..+.++++||||+.+.........+.++..+....... ..+...+. ....+.....+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (414)
T 3eiq_A 195 MLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL 274 (414)
T ss_dssp HHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHH
T ss_pred hhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHH
Confidence 632 22334455567899999999998888777777776665554432211 11222222 11222233334443
Q ss_pred Hh--cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEE
Q 003260 489 LD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566 (835)
Q Consensus 489 l~--~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~V 566 (835)
+. .+++++|||++++.++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 275 ~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~V 352 (414)
T 3eiq_A 275 YETLTITQAVIFINTRRKVDWLTEKMHAR--DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 352 (414)
T ss_dssp HHSSCCSSCEEECSCHHHHHHHHHHHHTT--TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCE
T ss_pred HHhCCCCcEEEEeCCHHHHHHHHHHHHhc--CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEE
Confidence 33 3579999999999999999999988 8899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 567 Ii~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|+++.|. +..+|.||+||+||.|+.|.||+++++.+
T Consensus 353 i~~~~p~-s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 388 (414)
T 3eiq_A 353 INYDLPT-NRENYIHRIGRGGRFGRKGVAINMVTEED 388 (414)
T ss_dssp EESSCCS-STHHHHHHSCCC-------CEEEEECSTH
T ss_pred EEeCCCC-CHHHhhhhcCcccCCCCCceEEEEEcHHH
Confidence 9999996 99999999999999999999999998763
No 9
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.2e-41 Score=378.10 Aligned_cols=324 Identities=17% Similarity=0.159 Sum_probs=254.1
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc---CCCEEEEEccc
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPT 340 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~---~g~qvlVLvPt 340 (835)
++.++ +.+.+.+.+...|+|+|.+|++.+++ ++++++++|||+|||++|+.+++..+. .+.+++|++|+
T Consensus 26 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-------~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 26 FYLKRELLMGIFEAGFEKPSPIQEEAIPVAIT-------GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp GCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHH-------TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-------CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 44555 77888777666899999999999975 367999999999999999999988765 35689999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCcc
Q 003260 341 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 341 r~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaH 415 (835)
++|+.|+++.+...+... ++++..++++....... ..+ .+.++|+|+||+.|.+ ...+.++++||+||+|
T Consensus 99 ~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~---~~~-~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 173 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDI---LRL-NETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD 173 (400)
T ss_dssp HHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHH---HHT-TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH
T ss_pred HHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHH---HHh-cCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch
Confidence 999999999999854443 78899998877654422 222 3568999999998753 2456889999999999
Q ss_pred ccchhhH----H-HHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCC-CccceeEEecccCHHHHHHHHHHHH
Q 003260 416 RFGVKQK----E-KIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP-ERLPIKTHLSAFSKEKVISAIKYEL 489 (835)
Q Consensus 416 r~g~~~~----e-~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~-~r~~v~~~~~~~~~~~l~~~i~~~l 489 (835)
++..... . .+..+....+++++|||+++.........+..+..+..... ....+..++...........+...+
T Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~ 253 (400)
T 1s2m_A 174 KMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLF 253 (400)
T ss_dssp HHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHH
T ss_pred HhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHHHHHHH
Confidence 8754321 2 22334567899999999987766666555555444433222 1222333333332222233333333
Q ss_pred --hcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEE
Q 003260 490 --DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567 (835)
Q Consensus 490 --~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VI 567 (835)
..+++++|||++++.++.+++.|... ++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 254 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi 331 (400)
T 1s2m_A 254 SKLQINQAIIFCNSTNRVELLAKKITDL--GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI 331 (400)
T ss_dssp HHSCCSEEEEECSSHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEE
T ss_pred hhcCCCcEEEEEecHHHHHHHHHHHHhc--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEE
Confidence 24679999999999999999999998 88999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 568 i~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+++.|. +..+|.||+||+||.|+.|.|++++++++
T Consensus 332 ~~~~p~-s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~ 366 (400)
T 1s2m_A 332 NFDFPK-TAETYLHRIGRSGRFGHLGLAINLINWND 366 (400)
T ss_dssp ESSCCS-SHHHHHHHHCBSSCTTCCEEEEEEECGGG
T ss_pred EeCCCC-CHHHHHHhcchhcCCCCCceEEEEeccch
Confidence 999996 99999999999999999999999998764
No 10
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=6.4e-42 Score=384.12 Aligned_cols=319 Identities=20% Similarity=0.196 Sum_probs=250.4
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc---CCCEEEEEcccHHHHHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPTIVLAKQ 346 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~---~g~qvlVLvPtr~LA~Q 346 (835)
+.+.+...+...|+|+|.+|++.+++ ++|+++++|||||||++|+.+++..+. .+.+++|++||++|+.|
T Consensus 48 l~~~l~~~g~~~~~~~Q~~ai~~i~~-------~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q 120 (410)
T 2j0s_A 48 LLRGIYAYGFEKPSAIQQRAIKQIIK-------GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQ 120 (410)
T ss_dssp HHHHHHHHTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHH
Confidence 66777666666899999999999874 468999999999999999999988764 46799999999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCccccchhh
Q 003260 347 HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFGVKQ 421 (835)
Q Consensus 347 ~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaHr~g~~~ 421 (835)
+++.+.. ++...++.+..+.++....+.. ..+..+ ++|+|+||+.|.+ .+.+.++++||+||+|++....
T Consensus 121 ~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~---~~~~~~-~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~ 195 (410)
T 2j0s_A 121 IQKGLLA-LGDYMNVQCHACIGGTNVGEDI---RKLDYG-QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG 195 (410)
T ss_dssp HHHHHHH-HTTTTTCCEEEECTTSCHHHHH---HHHHHC-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHH-HhccCCeEEEEEECCCCHHHHH---HHhhcC-CCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhh
Confidence 9999987 5555578999999887665533 333334 7999999988764 2456789999999999863321
Q ss_pred -----HHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCC--CccceeEEeccc-CHHHHHHHHHHHH--hc
Q 003260 422 -----KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP--ERLPIKTHLSAF-SKEKVISAIKYEL--DR 491 (835)
Q Consensus 422 -----~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~--~r~~v~~~~~~~-~~~~l~~~i~~~l--~~ 491 (835)
...+..+..+.+++++|||+++.........+.++..+..... ....+...+... ......+.+...+ ..
T Consensus 196 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~ 275 (410)
T 2j0s_A 196 FKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT 275 (410)
T ss_dssp THHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcC
Confidence 2233444578899999999988766655555655554433211 111222222211 1121223333322 23
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecC
Q 003260 492 GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571 (835)
Q Consensus 492 ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~ 571 (835)
.++++|||++++.++.+++.|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||+++.
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~ 353 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDL 353 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSC
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC--CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECC
Confidence 579999999999999999999987 889999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 572 p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|. +...|.||+||+||.|+.|.|++|+++.+
T Consensus 354 p~-s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 384 (410)
T 2j0s_A 354 PN-NRELYIHRIGRSGRYGRKGVAINFVKNDD 384 (410)
T ss_dssp CS-SHHHHHHHHTTSSGGGCCEEEEEEEEGGG
T ss_pred CC-CHHHHHHhcccccCCCCceEEEEEecHHH
Confidence 96 99999999999999999999999998764
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.6e-41 Score=372.75 Aligned_cols=322 Identities=21% Similarity=0.235 Sum_probs=260.3
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC--CCEEEEEcccH
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTI 341 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~--g~qvlVLvPtr 341 (835)
++.++ +.+.+.+.+...|+|+|.+|++.++++ ++++++++|||+|||++|+.+++..+.. +.+++|++|++
T Consensus 11 ~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~------~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~ 84 (367)
T 1hv8_A 11 LNLSDNILNAIRNKGFEKPTDIQMKVIPLFLND------EYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTR 84 (367)
T ss_dssp SSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHT------CSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCH
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC------CCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCH
Confidence 34455 778888888889999999999998752 3689999999999999999999887654 67999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----cccCCccEEEEcCccc
Q 003260 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQR 416 (835)
Q Consensus 342 ~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l~~~~l~llVIDEaHr 416 (835)
+|+.|+++++.+.+... ++.+..+.++.........+ . .++|+|+||+.|.+. ..+.++++||+||+|+
T Consensus 85 ~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~---~--~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 85 ELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKAL---K--NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE 158 (367)
T ss_dssp HHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHH---H--TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhc---C--CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH
Confidence 99999999999866543 68888888887665433332 2 479999999988642 4568899999999998
Q ss_pred cchh-----hHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCccceeEEecccCHHHHHHHHHHHH-h
Q 003260 417 FGVK-----QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYEL-D 490 (835)
Q Consensus 417 ~g~~-----~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~~~~~~~~l~~~i~~~l-~ 490 (835)
+... ....+.....+.+++++||||++.........+.+...+...... .+...+.........+.+...+ .
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~ 236 (367)
T 1hv8_A 159 MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKINA--NIEQSYVEVNENERFEALCRLLKN 236 (367)
T ss_dssp HHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSSS--SSEEEEEECCGGGHHHHHHHHHCS
T ss_pred hhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCCC--CceEEEEEeChHHHHHHHHHHHhc
Confidence 6322 123334455789999999999888777766666666666543322 2333333333333444554444 4
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEec
Q 003260 491 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570 (835)
Q Consensus 491 ~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d 570 (835)
.+++++|||++++.++.+++.|... +..+..+||+++..+|+.+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~ 314 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI--GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYH 314 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc--CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEec
Confidence 5678999999999999999999998 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 571 ~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
.|. +..+|.||+||+||.|+.|.|++++++.+
T Consensus 315 ~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 346 (367)
T 1hv8_A 315 LPQ-NPESYMHRIGRTGRAGKKGKAISIINRRE 346 (367)
T ss_dssp CCS-CHHHHHHHSTTTCCSSSCCEEEEEECTTS
T ss_pred CCC-CHHHhhhcccccccCCCccEEEEEEcHHH
Confidence 996 99999999999999999999999998764
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=4.3e-41 Score=373.04 Aligned_cols=324 Identities=21% Similarity=0.258 Sum_probs=254.8
Q ss_pred CCCCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc---CCCEEEEEc
Q 003260 263 PPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLA 338 (835)
Q Consensus 263 ~~~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~---~g~qvlVLv 338 (835)
..++.++ +.+.+.+.+...|+|+|.+|++.+++ ..++++++++|||+|||++|+.+++..+. .+.+++|++
T Consensus 8 ~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~-----~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 8 DELGLAPELLKGIYAMKFQKPSKIQERALPLLLH-----NPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp TTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHC-----SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred hhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHc-----CCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 3455666 88888888888999999999999874 23478999999999999999999988765 467899999
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcC
Q 003260 339 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDE 413 (835)
Q Consensus 339 Ptr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDE 413 (835)
||++|+.|+++.+.+ +....++.+....+...... ....++|+|+||+.|.+ ...+.++++||+||
T Consensus 83 P~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 83 PSRELARQTLEVVQE-MGKFTKITSQLIVPDSFEKN--------KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp SSHHHHHHHHHHHHH-HTTTSCCCEEEESTTSSCTT--------SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred CCHHHHHHHHHHHHH-HhcccCeeEEEEecCchhhh--------ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 999999999999987 55555788888777543221 12358999999998764 23578899999999
Q ss_pred ccccchh-----h-HHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCC--CccceeEEeccc-CHHHHHHH
Q 003260 414 EQRFGVK-----Q-KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP--ERLPIKTHLSAF-SKEKVISA 484 (835)
Q Consensus 414 aHr~g~~-----~-~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~--~r~~v~~~~~~~-~~~~l~~~ 484 (835)
+|++... . ......+..+.+++++|||+.+...........+...+..... ....+...+... ........
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDV 233 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHH
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHH
Confidence 9986431 1 1223344567899999999988766666666655555443221 112233332222 33334444
Q ss_pred HHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCC
Q 003260 485 IKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562 (835)
Q Consensus 485 i~~~l~--~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~ 562 (835)
+...+. .+++++|||++++.++.+++.|+.. +..+..+||+|+..+|+.+++.|++|+.+|||||+++++|+|+|+
T Consensus 234 l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 311 (395)
T 3pey_A 234 LTELYGLMTIGSSIIFVATKKTANVLYGKLKSE--GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPT 311 (395)
T ss_dssp HHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTT
T ss_pred HHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCccc
Confidence 444443 4589999999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCC-----ChhHHHHHhcccCCCCCceEEEEEecCC
Q 003260 563 ANTIIVQDVQQF-----GLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 563 v~~VIi~d~p~~-----sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
+++||+++.|.+ +..+|+||+||+||.|+.|.|++++++.
T Consensus 312 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 356 (395)
T 3pey_A 312 VSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDK 356 (395)
T ss_dssp EEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH
T ss_pred CCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEech
Confidence 999999999852 7899999999999999999999999764
No 13
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=5.7e-42 Score=386.30 Aligned_cols=309 Identities=17% Similarity=0.210 Sum_probs=242.0
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~ 349 (835)
+.+.|.+.++|+|||+|.+|++.+++ ++|+++++|||||||++|+.+++.....+++++|++||++|+.|+++
T Consensus 10 ~~~~l~~~~~~~~~~~Q~~~i~~i~~-------~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 82 (414)
T 3oiy_A 10 FRSFFKKKFGKDLTGYQRLWAKRIVQ-------GKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLE 82 (414)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHTT-------TCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhc-------CCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHH
Confidence 44567777889999999999999864 46899999999999999999988888889999999999999999999
Q ss_pred HHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc---cccCCccEEEEcCccccc--------
Q 003260 350 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR---VVYNNLGLLVVDEEQRFG-------- 418 (835)
Q Consensus 350 ~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~---l~~~~l~llVIDEaHr~g-------- 418 (835)
+++. +.. .++++..++|+.+..++...+..+..|.++|+|+||+.|.+. +.+.++++|||||||++.
T Consensus 83 ~~~~-~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~ 160 (414)
T 3oiy_A 83 RLQK-LAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDT 160 (414)
T ss_dssp HHHH-HCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHH
T ss_pred HHHH-Hcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhh
Confidence 9998 554 589999999999988888888899999899999999998543 456799999999999742
Q ss_pred ------hh---hHHHHhhhc-----------CCceEEEeecCCChhhHH-HHHhcCCCcceecCCCCCccceeEEecc-c
Q 003260 419 ------VK---QKEKIASFK-----------ISVDVLTLSATPIPRTLY-LALTGFRDASLISTPPPERLPIKTHLSA-F 476 (835)
Q Consensus 419 ------~~---~~e~l~~l~-----------~~~~vL~lSATp~p~tl~-~~~~g~~d~s~I~~~p~~r~~v~~~~~~-~ 476 (835)
+. ....+..++ .+.+++++|||+.|.... .....+....+... ......+...+.. .
T Consensus 161 ~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~ 239 (414)
T 3oiy_A 161 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRL-VSVARNITHVRISSR 239 (414)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSCC-CCCCCSEEEEEESSC
T ss_pred HHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCcc-ccccccchheeeccC
Confidence 21 112233333 778999999996554321 11111111111111 1111223333222 2
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEE-EEeCCCCHHHHHHHHHHhhcCCeeEEEE----c
Q 003260 477 SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIA-IAHGQQYSRQLEETMEKFAQGAIKILIC----T 551 (835)
Q Consensus 477 ~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~-~lhg~m~~~ere~vl~~F~~g~~~ILVa----T 551 (835)
....+.+.+.. .+++++|||+++..++.+++.|... ++.+. .+||+ +|+ ++.|++|+++|||| |
T Consensus 240 ~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T 308 (414)
T 3oiy_A 240 SKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRF--KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYY 308 (414)
T ss_dssp CHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHT--TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTT
T ss_pred HHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHc--CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcC
Confidence 33444444444 4689999999999999999999998 88888 88985 444 99999999999999 9
Q ss_pred CcCCcCCCCCC-ccEEEEecCCC-CChhHHHHHhcccCCCC----CceEEEEEe
Q 003260 552 NIVESGLDIQN-ANTIIVQDVQQ-FGLAQLYQLRGRVGRAD----KEAHAYLFY 599 (835)
Q Consensus 552 ~iie~GIDIp~-v~~VIi~d~p~-~sl~~l~Qr~GRaGR~g----~~G~ay~l~ 599 (835)
+++++|+|+|+ +++||+++.|. .+..+|+||+||+||.| +.|.|++++
T Consensus 309 ~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 309 GKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp CCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred chhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 99999999999 99999999993 38999999999999987 589999999
No 14
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.3e-41 Score=398.60 Aligned_cols=325 Identities=21% Similarity=0.199 Sum_probs=248.9
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCC-------CEEEEEcccHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-------KQAMVLAPTIV 342 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g-------~qvlVLvPtr~ 342 (835)
+.+.+...+...|||+|.+||+.++. ..++|+|+++|||||||++|++|++..+..+ .+++||+||++
T Consensus 83 l~~~l~~~g~~~~~~~Q~~~i~~~l~-----~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 83 IHKAITRMEFPGLTPVQQKTIKPILS-----SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp HHHHHHTTCCSSCCHHHHHHHHHHHS-----SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhc-----CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 56666665555799999999999873 2357999999999999999999999877543 48999999999
Q ss_pred HHHHHHHHHHHhhcC---CCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc------cccCCccEEEEcC
Q 003260 343 LAKQHFDVVSERFSK---YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNNLGLLVVDE 413 (835)
Q Consensus 343 LA~Q~~~~~~~~f~~---~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~------l~~~~l~llVIDE 413 (835)
||.|+++.++..+.. .++..+..+.++.+... .+..+..+.++|+|+||+.|.+. ..+.++++|||||
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 234 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDE 234 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEET
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH---HHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeC
Confidence 999999999985432 23456777777765443 44555556699999999988642 3568899999999
Q ss_pred ccccch----hhHHHH----hhh----cCCceEEEeecCCChhhHHHHHhcCCCcceecC--C----CCCccceeEEe--
Q 003260 414 EQRFGV----KQKEKI----ASF----KISVDVLTLSATPIPRTLYLALTGFRDASLIST--P----PPERLPIKTHL-- 473 (835)
Q Consensus 414 aHr~g~----~~~e~l----~~l----~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~--~----p~~r~~v~~~~-- 473 (835)
||++.. ...+.+ ... ..++++++||||+++.........+.+...+.. . +.....+...+
T Consensus 235 ah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (563)
T 3i5x_A 235 ADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVI 314 (563)
T ss_dssp HHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEE
T ss_pred HHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEE
Confidence 998632 112222 111 237799999999988776666666555443321 1 11111122211
Q ss_pred cccCHH---HHHHHHHHHH---hcCCeEEEEecCccChHHHHHHHHhhCC-CCeEEEEeCCCCHHHHHHHHHHhhcCCee
Q 003260 474 SAFSKE---KVISAIKYEL---DRGGQVFYVLPRIKGLEEPMDFLQQAFP-GVDIAIAHGQQYSRQLEETMEKFAQGAIK 546 (835)
Q Consensus 474 ~~~~~~---~l~~~i~~~l---~~ggqvlVf~n~v~~~e~l~~~L~~~~p-~~~v~~lhg~m~~~ere~vl~~F~~g~~~ 546 (835)
...... .....+...+ ..+++++|||+++..++.+++.|.+.++ ++.+..+||+|++.+|+.+++.|++|+.+
T Consensus 315 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~ 394 (563)
T 3i5x_A 315 SEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG 394 (563)
T ss_dssp ESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSE
T ss_pred CchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCC
Confidence 111112 2233333333 4568999999999999999999998766 78999999999999999999999999999
Q ss_pred EEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 547 ILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 547 ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|||||+++++|||+|++++||+++.|. +..+|+||+||+||.|+.|.|++++++.+
T Consensus 395 vLvaT~~~~~GiDip~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~g~~i~~~~~~e 450 (563)
T 3i5x_A 395 ILVCTDVGARGMDFPNVHEVLQIGVPS-ELANYIHRIGRTARSGKEGSSVLFICKDE 450 (563)
T ss_dssp EEEECGGGTSSCCCTTCCEEEEESCCS-STTHHHHHHTTSSCTTCCEEEEEEEEGGG
T ss_pred EEEEcchhhcCCCcccCCEEEEECCCC-chhhhhhhcCccccCCCCceEEEEEchhH
Confidence 999999999999999999999999997 99999999999999999999999998763
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=8.2e-41 Score=394.55 Aligned_cols=319 Identities=18% Similarity=0.198 Sum_probs=257.7
Q ss_pred CCCCh-HHHHHHHhCCC-CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHH
Q 003260 265 YPKNP-AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIV 342 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~-~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~ 342 (835)
++.++ +...+.+.|+| .|+|+|.++|+.+++ ++|+++++|||+|||++|++|++. .++.++|++|+++
T Consensus 26 ~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~-------g~d~lv~~pTGsGKTl~~~lpal~---~~g~~lVisP~~~ 95 (591)
T 2v1x_A 26 FPWSGKVKDILQNVFKLEKFRPLQLETINVTMA-------GKEVFLVMPTGGGKSLCYQLPALC---SDGFTLVICPLIS 95 (591)
T ss_dssp STTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHT-------TCCEEEECCTTSCTTHHHHHHHHT---SSSEEEEECSCHH
T ss_pred CCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc-------CCCEEEEECCCChHHHHHHHHHHH---cCCcEEEEeCHHH
Confidence 55555 67778887777 899999999999975 478999999999999999999864 3679999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhh--hcCCcceeeccHHHhhc----------ccccCCccEEE
Q 003260 343 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI--KHGHLNIIVGTHSLLGS----------RVVYNNLGLLV 410 (835)
Q Consensus 343 LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l--~~G~~dIIVgT~~~L~~----------~l~~~~l~llV 410 (835)
|+.|+++.+.+. |+.+..++++.+..+....+..+ ..+.++|+|+||+.|.. ...+.++++||
T Consensus 96 L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iV 170 (591)
T 2v1x_A 96 LMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIA 170 (591)
T ss_dssp HHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEE
Confidence 999999999874 68899999999888887777777 46789999999987743 12356899999
Q ss_pred EcCccccc-----h----hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcC--CCcceecCCCCCccceeEEec--ccC
Q 003260 411 VDEEQRFG-----V----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGF--RDASLISTPPPERLPIKTHLS--AFS 477 (835)
Q Consensus 411 IDEaHr~g-----~----~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~--~d~s~I~~~p~~r~~v~~~~~--~~~ 477 (835)
|||||++. + .....+....++.++++||||+.+.........+ .+...+.. ...+..+...+. ...
T Consensus 171 iDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~~ 249 (591)
T 2v1x_A 171 VDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQKPSN 249 (591)
T ss_dssp EETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEECCSS
T ss_pred EECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEeCCCc
Confidence 99999853 1 1222455556789999999999887665544333 23222222 222333332222 223
Q ss_pred HHHHHHHHHHHHh---cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcC
Q 003260 478 KEKVISAIKYELD---RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIV 554 (835)
Q Consensus 478 ~~~l~~~i~~~l~---~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~ii 554 (835)
.......+...+. .++++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.|.+|+.+|||||+++
T Consensus 250 ~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~--g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~ 327 (591)
T 2v1x_A 250 TEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL--GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAF 327 (591)
T ss_dssp HHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTS
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC--CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechh
Confidence 3455566666554 4689999999999999999999998 8899999999999999999999999999999999999
Q ss_pred CcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCC
Q 003260 555 ESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 555 e~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
++|||+|++++||+++.|. +++.|+|++||+||.|+.|.|+++|++.
T Consensus 328 ~~GID~p~V~~VI~~~~p~-s~~~y~Qr~GRaGR~G~~g~~i~l~~~~ 374 (591)
T 2v1x_A 328 GMGIDKPDVRFVIHHSMSK-SMENYYQESGRAGRDDMKADCILYYGFG 374 (591)
T ss_dssp CTTCCCSCEEEEEESSCCS-SHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred hcCCCcccccEEEEeCCCC-CHHHHHHHhccCCcCCCCceEEEEEChH
Confidence 9999999999999999997 9999999999999999999999999754
No 16
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.2e-41 Score=396.47 Aligned_cols=325 Identities=21% Similarity=0.199 Sum_probs=249.6
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-------CCEEEEEcccHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-------GKQAMVLAPTIV 342 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-------g~qvlVLvPtr~ 342 (835)
+.+.+...+...|||+|.+||+.++. ..++|+++++|||+|||++|++|++..+.. +.+++|++||++
T Consensus 32 l~~~l~~~g~~~~~~~Q~~~i~~il~-----~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 32 IHKAITRMEFPGLTPVQQKTIKPILS-----SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 106 (579)
T ss_dssp HHHHHHTTTCSSCCHHHHHHHHHHHC-----SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHc-----cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHH
Confidence 56667655555799999999999873 235799999999999999999999887643 348999999999
Q ss_pred HHHHHHHHHHHhhc---CCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc------ccccCCccEEEEcC
Q 003260 343 LAKQHFDVVSERFS---KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVVDE 413 (835)
Q Consensus 343 LA~Q~~~~~~~~f~---~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~------~l~~~~l~llVIDE 413 (835)
|+.|+++.+.+.+. ..+.+.+..+.++..... .+..+..+.++|+|+||+.|.+ ...+.++++|||||
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDE 183 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDE 183 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEET
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHH---HHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEC
Confidence 99999999998543 233466777777765443 4455555669999999998864 23568899999999
Q ss_pred ccccc---h-hhHHHHh----hh----cCCceEEEeecCCChhhHHHHHhcCCCcceecCC------CCCccceeEEe--
Q 003260 414 EQRFG---V-KQKEKIA----SF----KISVDVLTLSATPIPRTLYLALTGFRDASLISTP------PPERLPIKTHL-- 473 (835)
Q Consensus 414 aHr~g---~-~~~e~l~----~l----~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~------p~~r~~v~~~~-- 473 (835)
||++. + ...+.+. .. ..+.++++||||+.+.....+...+.++..+... +.....+...+
T Consensus 184 ah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 263 (579)
T 3sqw_A 184 ADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVI 263 (579)
T ss_dssp HHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEE
T ss_pred hHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEE
Confidence 99863 2 1222222 11 1367999999999887777666666654433211 11111222221
Q ss_pred cccCH---HHHHHHHHHHH---hcCCeEEEEecCccChHHHHHHHHhhCC-CCeEEEEeCCCCHHHHHHHHHHhhcCCee
Q 003260 474 SAFSK---EKVISAIKYEL---DRGGQVFYVLPRIKGLEEPMDFLQQAFP-GVDIAIAHGQQYSRQLEETMEKFAQGAIK 546 (835)
Q Consensus 474 ~~~~~---~~l~~~i~~~l---~~ggqvlVf~n~v~~~e~l~~~L~~~~p-~~~v~~lhg~m~~~ere~vl~~F~~g~~~ 546 (835)
..... ......+...+ ..+++++|||+++..++.+++.|...++ ++.+..+||+|++.+|..+++.|++|+.+
T Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~ 343 (579)
T 3sqw_A 264 SEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG 343 (579)
T ss_dssp ESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSE
T ss_pred ecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCe
Confidence 11111 12333344333 3467999999999999999999998765 78999999999999999999999999999
Q ss_pred EEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 547 ILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 547 ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|||||+++++|||+|++++||+++.|. +..+|+||+||+||.|+.|.|++++++.+
T Consensus 344 vLVaT~~~~~GiDip~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~g~~i~~~~~~e 399 (579)
T 3sqw_A 344 ILVCTDVGARGMDFPNVHEVLQIGVPS-ELANYIHRIGRTARSGKEGSSVLFICKDE 399 (579)
T ss_dssp EEEECGGGTSSCCCTTCCEEEEESCCS-STTHHHHHHTTSSCTTCCEEEEEEEEGGG
T ss_pred EEEEcchhhcCCCcccCCEEEEcCCCC-CHHHhhhhccccccCCCCceEEEEEcccH
Confidence 999999999999999999999999997 99999999999999999999999998753
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.2e-40 Score=388.24 Aligned_cols=313 Identities=20% Similarity=0.242 Sum_probs=252.4
Q ss_pred HHHHHHHhCCC-CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHH
Q 003260 270 AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 348 (835)
Q Consensus 270 l~~~~~~~f~~-~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~ 348 (835)
+...+.+.|+| .|+|+|.++|+.+++ ++|+++++|||+|||++|++|++.. ++.++|++|+++|+.|++
T Consensus 13 ~~~~l~~~~g~~~~r~~Q~~~i~~il~-------g~d~lv~apTGsGKTl~~~lp~l~~---~g~~lvi~P~~aL~~q~~ 82 (523)
T 1oyw_A 13 AKQVLQETFGYQQFRPGQEEIIDTVLS-------GRDCLVVMPTGGGKSLCYQIPALLL---NGLTVVVSPLISLMKDQV 82 (523)
T ss_dssp HHHHHHHTTCCSSCCTTHHHHHHHHHT-------TCCEEEECSCHHHHHHHHHHHHHHS---SSEEEEECSCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHc-------CCCEEEECCCCcHHHHHHHHHHHHh---CCCEEEECChHHHHHHHH
Confidence 66778887777 899999999999874 4689999999999999999988743 578999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----cccCCccEEEEcCccccch----
Q 003260 349 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFGV---- 419 (835)
Q Consensus 349 ~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l~~~~l~llVIDEaHr~g~---- 419 (835)
+.+.+ + |+.+..+++..+..+....+..+..|.++|+|+||+.|... +...++++|||||||++..
T Consensus 83 ~~l~~-~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~ 157 (523)
T 1oyw_A 83 DQLQA-N----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHD 157 (523)
T ss_dssp HHHHH-T----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSC
T ss_pred HHHHH-c----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCc
Confidence 99986 3 68899999998888888888888889999999999988632 3447899999999998631
Q ss_pred -----hhHHHHhhhcCCceEEEeecCCChhhHHHHH--hcCCCcceecCCCCCccceeEEecccC--HHHHHHHHHHHHh
Q 003260 420 -----KQKEKIASFKISVDVLTLSATPIPRTLYLAL--TGFRDASLISTPPPERLPIKTHLSAFS--KEKVISAIKYELD 490 (835)
Q Consensus 420 -----~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~--~g~~d~s~I~~~p~~r~~v~~~~~~~~--~~~l~~~i~~~l~ 490 (835)
.....+....++.+++++|||+.+....... .++.++.++.. ...+..+...+.... ...+.+.+.. .
T Consensus 158 fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~~l~~~v~~~~~~~~~l~~~l~~--~ 234 (523)
T 1oyw_A 158 FRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS-SFDRPNIRYMLMEKFKPLDQLMRYVQE--Q 234 (523)
T ss_dssp CCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC-CCCCTTEEEEEEECSSHHHHHHHHHHH--T
T ss_pred cHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC-CCCCCceEEEEEeCCCHHHHHHHHHHh--c
Confidence 1122233344678999999999887654332 34444443332 233333333332221 2223333322 1
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEec
Q 003260 491 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570 (835)
Q Consensus 491 ~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d 570 (835)
.+++++|||++++.++.+++.|... ++.+..+||+|++.+|+.+++.|.+|+.+|||||+++++|||+|++++||+++
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~ 312 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSK--GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 312 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESS
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHC--CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEEC
Confidence 5679999999999999999999998 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 571 ~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
.|. ++++|+||+||+||.|..|.|++++++.+
T Consensus 313 ~p~-s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d 344 (523)
T 1oyw_A 313 IPR-NIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (523)
T ss_dssp CCS-SHHHHHHHHTTSCTTSSCEEEEEEECHHH
T ss_pred CCC-CHHHHHHHhccccCCCCCceEEEEeCHHH
Confidence 997 99999999999999999999999997653
No 18
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.2e-42 Score=397.37 Aligned_cols=319 Identities=21% Similarity=0.209 Sum_probs=140.1
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCC---CEEEEEcccHHHHHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG---KQAMVLAPTIVLAKQ 346 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g---~qvlVLvPtr~LA~Q 346 (835)
+.+.+.+.+...|||+|.+|++.++. ..++++|++||||||||++|+++++..+..+ ++++||+||++|+.|
T Consensus 103 l~~~l~~~g~~~p~~~Q~~ai~~il~-----~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q 177 (479)
T 3fmp_B 103 LLQGVYAMGFNRPSKIQENALPLMLA-----EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQ 177 (479)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHTS-----BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHc-----CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHH
Confidence 67778777777999999999999874 2358999999999999999999998877654 389999999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc------ccccCCccEEEEcCccccch-
Q 003260 347 HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVVDEEQRFGV- 419 (835)
Q Consensus 347 ~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~------~l~~~~l~llVIDEaHr~g~- 419 (835)
+++.+.+....++++.+.+..++..... ......+|+|+||+.|.+ .+.+.++++|||||+|++..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~ 250 (479)
T 3fmp_B 178 TGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIAT 250 (479)
T ss_dssp HHHHHHHHHTTSTTCCEEEESTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTS
T ss_pred HHHHHHHHHhhCCCceEEEEeCCccccc-------cccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhc
Confidence 9999987554456778888877654321 112347899999998854 34568999999999998632
Q ss_pred ---h--hHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCcc--ceeEEeccc-CHHHHHHHHHHHHh-
Q 003260 420 ---K--QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL--PIKTHLSAF-SKEKVISAIKYELD- 490 (835)
Q Consensus 420 ---~--~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~--~v~~~~~~~-~~~~l~~~i~~~l~- 490 (835)
. ....+..+..+.+++++|||+.+.....+...+.++..+........ .+...+... ........+...+.
T Consensus 251 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 330 (479)
T 3fmp_B 251 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGA 330 (479)
T ss_dssp TTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------------------
T ss_pred CCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhh
Confidence 1 12223344568999999999998888777777777766654322111 111111111 11222223333222
Q ss_pred -cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEe
Q 003260 491 -RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569 (835)
Q Consensus 491 -~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~ 569 (835)
.+++++|||+++..++.+++.|... +..+.++||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||++
T Consensus 331 ~~~~~~lvF~~s~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~ 408 (479)
T 3fmp_B 331 ITIAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINF 408 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCceEEEeCcHHHHHHHHHHHHhC--CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEe
Confidence 3578999999999999999999988 7889999999999999999999999999999999999999999999999999
Q ss_pred cCCC-----CChhHHHHHhcccCCCCCceEEEEEecCC
Q 003260 570 DVQQ-----FGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 570 d~p~-----~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
|.|. .+..+|+||+||+||.|+.|.|++|+++.
T Consensus 409 d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~ 446 (479)
T 3fmp_B 409 DLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446 (479)
T ss_dssp --------------------------------------
T ss_pred cCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCc
Confidence 9994 25689999999999999999999999865
No 19
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.7e-40 Score=359.15 Aligned_cols=305 Identities=17% Similarity=0.166 Sum_probs=239.1
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~ 349 (835)
+.+.+.+.+...|+|+|.+|++.+++ ++++++++|||+|||++|+.+++.. +.+++|++|+++|+.|+++
T Consensus 5 i~~~l~~~g~~~l~~~Q~~~i~~i~~-------~~~~lv~~~TGsGKT~~~~~~~~~~---~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 5 IEQAIREMGFKNFTEVQSKTIPLMLQ-------GKNVVVRAKTGSGKTAAYAIPILEL---GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEECSSHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhc-------CCCEEEEcCCCCcHHHHHHHHHHhh---cCCEEEEeCCHHHHHHHHH
Confidence 66777777667899999999999874 4689999999999999999988765 7899999999999999999
Q ss_pred HHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCccccchh----
Q 003260 350 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFGVK---- 420 (835)
Q Consensus 350 ~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaHr~g~~---- 420 (835)
.+++ +....++++..++++.........+ ..++|+|+||+.|.+ .+.+.++++||+||+|++...
T Consensus 75 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~ 148 (337)
T 2z0m_A 75 HIRD-IGRYMDTKVAEVYGGMPYKAQINRV-----RNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFID 148 (337)
T ss_dssp HHHH-HTTTSCCCEEEECTTSCHHHHHHHH-----TTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHH
T ss_pred HHHH-HhhhcCCcEEEEECCcchHHHHhhc-----CCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHH
Confidence 9997 4444478899999987765543333 238999999998764 235678999999999986321
Q ss_pred -hHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCccceeEEeccc--CHHHHHHHHHHHHhcCCeEEE
Q 003260 421 -QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAF--SKEKVISAIKYELDRGGQVFY 497 (835)
Q Consensus 421 -~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~~~~--~~~~l~~~i~~~l~~ggqvlV 497 (835)
....+.......+++++|||+++.........+.+...+... .....+....... ........+. ...+++++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lv 225 (337)
T 2z0m_A 149 DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC-IGLANVEHKFVHVKDDWRSKVQALR--ENKDKGVIV 225 (337)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS-GGGGGEEEEEEECSSSSHHHHHHHH--TCCCSSEEE
T ss_pred HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc-cccCCceEEEEEeChHHHHHHHHHH--hCCCCcEEE
Confidence 123344455678889999999887766666666665555332 1112222222211 1122222221 145689999
Q ss_pred EecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChh
Q 003260 498 VLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 577 (835)
Q Consensus 498 f~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~ 577 (835)
||++++.++.+++.|. .+..+||+|+..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|. +..
T Consensus 226 f~~~~~~~~~l~~~l~------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~-s~~ 298 (337)
T 2z0m_A 226 FVRTRNRVAKLVRLFD------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQ-DLR 298 (337)
T ss_dssp ECSCHHHHHHHHTTCT------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCS-SHH
T ss_pred EEcCHHHHHHHHHHhh------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCC-CHH
Confidence 9999999888877765 478999999999999999999999999999999999999999999999999996 999
Q ss_pred HHHHHhcccCCCCCceEEEEEec
Q 003260 578 QLYQLRGRVGRADKEAHAYLFYP 600 (835)
Q Consensus 578 ~l~Qr~GRaGR~g~~G~ay~l~~ 600 (835)
+|.||+||+||.|+.|.|++++.
T Consensus 299 ~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 299 TYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp HHHHHHTTBCGGGCCEEEEEEES
T ss_pred HhhHhcCccccCCCCceEEEEEe
Confidence 99999999999999999999998
No 20
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2e-41 Score=376.51 Aligned_cols=324 Identities=22% Similarity=0.199 Sum_probs=142.5
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc---CCCEEEEEccc
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPT 340 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~---~g~qvlVLvPt 340 (835)
++.++ +.+.+...+...|+|+|.+|++.+++ ++++++++|||+|||++|+.+++..+. .+++++|++|+
T Consensus 26 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-------~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 98 (394)
T 1fuu_A 26 MELDENLLRGVFGYGFEEPSAIQQRAIMPIIE-------GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 98 (394)
T ss_dssp GCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHH-------TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCC
Confidence 34455 77778777777999999999999875 368999999999999999999988765 35799999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCcc
Q 003260 341 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 341 r~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaH 415 (835)
++|+.|+++.+.+.+.. .++++..++|+.+..+....+. .++|+|+||+.|.+ ...+.++++||+||+|
T Consensus 99 ~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah 172 (394)
T 1fuu_A 99 RELALQIQKVVMALAFH-MDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 172 (394)
T ss_dssp HHHHHHHHHHHHHHTTT-SCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHHhcc-CCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChH
Confidence 99999999999875444 4789999999877665444432 37999999998764 2346789999999999
Q ss_pred ccchh-----hHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCc--cceeEEecccCH-HHHHHHHHH
Q 003260 416 RFGVK-----QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LPIKTHLSAFSK-EKVISAIKY 487 (835)
Q Consensus 416 r~g~~-----~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r--~~v~~~~~~~~~-~~l~~~i~~ 487 (835)
++... ....+..+....+++++||||.+.........+.++..+....... ..+......... +.....+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (394)
T 1fuu_A 173 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTD 252 (394)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------------
T ss_pred HhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHH
Confidence 86321 2233444567889999999998877666666665554443322111 111111111111 111222222
Q ss_pred HH--hcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccE
Q 003260 488 EL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565 (835)
Q Consensus 488 ~l--~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~ 565 (835)
.+ ..+++++|||++++.++.+++.|++. ++.+..+||+|+..+|+.+++.|++|+.+|||||+++++|+|+|++++
T Consensus 253 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~ 330 (394)
T 1fuu_A 253 LYDSISVTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSL 330 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCCcEEEEECCHHHHHHHHHHHHHc--CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCE
Confidence 22 23579999999999999999999987 788999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003260 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 566 VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
||+++.|. +..+|.||+||+||.|+.|.|++++++++.
T Consensus 331 Vi~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 368 (394)
T 1fuu_A 331 VINYDLPA-NKENYIHRIGRGGRFGRKGVAINFVTNEDV 368 (394)
T ss_dssp ---------------------------------------
T ss_pred EEEeCCCC-CHHHHHHHcCcccCCCCCceEEEEEchhHH
Confidence 99999996 999999999999999999999999987753
No 21
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.4e-39 Score=391.95 Aligned_cols=311 Identities=20% Similarity=0.253 Sum_probs=235.4
Q ss_pred HHHHHHHhCCC-CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHH
Q 003260 270 AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 348 (835)
Q Consensus 270 l~~~~~~~f~~-~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~ 348 (835)
+.+.+.+ ++| +|+|+|.++++.+.+ +++++++||||||||++|.++++..+..+.+++|++|+++||.|++
T Consensus 14 ~~~~l~~-~g~~~l~~~Q~~~i~~i~~-------~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~ 85 (702)
T 2p6r_A 14 AVGILKE-EGIEELFPPQAEAVEKVFS-------GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKY 85 (702)
T ss_dssp HHHHHHC-C---CCCCCCHHHHHHHTT-------CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHH
T ss_pred HHHHHHh-CCCCCCCHHHHHHHHHHhC-------CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHH
Confidence 3344444 455 999999999999643 5789999999999999999999988878899999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc----c-cccCCccEEEEcCccccchhh--
Q 003260 349 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS----R-VVYNNLGLLVVDEEQRFGVKQ-- 421 (835)
Q Consensus 349 ~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~----~-l~~~~l~llVIDEaHr~g~~~-- 421 (835)
++++ .+..+ |++++.++|+....++ ..+.++|+|+||+.|.. . ..+.++++|||||+|+++...
T Consensus 86 ~~~~-~~~~~-g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~ 156 (702)
T 2p6r_A 86 ESFK-KWEKI-GLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRG 156 (702)
T ss_dssp HHHT-TTTTT-TCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTH
T ss_pred HHHH-HHHhc-CCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcc
Confidence 9995 57666 7999999997654331 11468999999987753 2 236889999999999964311
Q ss_pred --H----HHHhhhcCCceEEEeecCCCh-hhHHHHHhcCCCcceecCCCCCccceeEEecc-----c-CH-------HHH
Q 003260 422 --K----EKIASFKISVDVLTLSATPIP-RTLYLALTGFRDASLISTPPPERLPIKTHLSA-----F-SK-------EKV 481 (835)
Q Consensus 422 --~----e~l~~l~~~~~vL~lSATp~p-~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~~~-----~-~~-------~~l 481 (835)
. ..+....++.++|+||||+.. ..+... .+...+.. +....++...+.. + .. ...
T Consensus 157 ~~~~~ll~~l~~~~~~~~ii~lSATl~n~~~~~~~----l~~~~~~~-~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (702)
T 2p6r_A 157 ATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEW----LDADYYVS-DWRPVPLVEGVLCEGTLELFDGAFSTSRRVKF 231 (702)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECCCTTHHHHHHH----TTCEEEEC-CCCSSCEEEEEECSSEEEEEETTEEEEEECCH
T ss_pred cHHHHHHHHHHhcCcCceEEEECCCcCCHHHHHHH----hCCCcccC-CCCCccceEEEeeCCeeeccCcchhhhhhhhH
Confidence 1 223334578999999999863 322221 22333322 1222333322110 0 00 014
Q ss_pred HHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC----------------------------CCeEEEEeCCCCHHHH
Q 003260 482 ISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP----------------------------GVDIAIAHGQQYSRQL 533 (835)
Q Consensus 482 ~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p----------------------------~~~v~~lhg~m~~~er 533 (835)
...+.+.+..+++++|||+++++++.++..|.+.++ +..+.++||+|++++|
T Consensus 232 ~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R 311 (702)
T 2p6r_A 232 EELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQR 311 (702)
T ss_dssp HHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHH
T ss_pred HHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHH
Confidence 566666677899999999999999999998876421 1358899999999999
Q ss_pred HHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEE----ec---CCCCChhHHHHHhcccCCCC--CceEEEEEecCCC
Q 003260 534 EETMEKFAQGAIKILICTNIVESGLDIQNANTIIV----QD---VQQFGLAQLYQLRGRVGRAD--KEAHAYLFYPDKS 603 (835)
Q Consensus 534 e~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi----~d---~p~~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~~ 603 (835)
..+++.|++|.++|||||+++++|||+|++++||+ || .| .+.++|.||+|||||.| ..|.||+++++.+
T Consensus 312 ~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~-~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 312 RVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKR-IKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp HHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEE-CCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred HHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCc-CCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 99999999999999999999999999999999998 55 34 48999999999999998 5899999998764
No 22
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.1e-39 Score=394.05 Aligned_cols=318 Identities=18% Similarity=0.192 Sum_probs=237.7
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHH-HHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc-CCCEEEEEcccH
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLD-VERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTI 341 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~-il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~-~g~qvlVLvPtr 341 (835)
++.++ +.+.+.+.+...|+|+|.+|++. +.+ +++++++||||||||++|.++++..+. .+.+++|++|++
T Consensus 6 l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~-------~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~r 78 (720)
T 2zj8_A 6 LRVDERIKSTLKERGIESFYPPQAEALKSGILE-------GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLK 78 (720)
T ss_dssp CCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGG-------TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSG
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-------CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcH
Confidence 45566 55556554344999999999987 432 578999999999999999999887765 688999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCccc
Q 003260 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQR 416 (835)
Q Consensus 342 ~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaHr 416 (835)
+|+.|++++++ .+..+ |++++.++|+.....+ ..+.++|+|+||+.|.. ...+.++++|||||+|.
T Consensus 79 aLa~q~~~~~~-~l~~~-g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 149 (720)
T 2zj8_A 79 ALAEEKFQEFQ-DWEKI-GLRVAMATGDYDSKDE-------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHL 149 (720)
T ss_dssp GGHHHHHHHTG-GGGGG-TCCEEEECSCSSCCCG-------GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGG
T ss_pred HHHHHHHHHHH-HHHhc-CCEEEEecCCCCcccc-------ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcc
Confidence 99999999995 46665 7899999997654331 12468999999987743 22368899999999998
Q ss_pred cchh-----hHHHHhhhcCCceEEEeecCCCh-hhHHHHHhcCCCcceecCCCCCccceeEEe--------ccc---CHH
Q 003260 417 FGVK-----QKEKIASFKISVDVLTLSATPIP-RTLYLALTGFRDASLISTPPPERLPIKTHL--------SAF---SKE 479 (835)
Q Consensus 417 ~g~~-----~~e~l~~l~~~~~vL~lSATp~p-~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~--------~~~---~~~ 479 (835)
++.. ....+..++.+.++|+||||+.. ..+...+ +...+... ....++...+ ... ...
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~~~~~~~l----~~~~~~~~-~rp~~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T 2zj8_A 150 IGSRDRGATLEVILAHMLGKAQIIGLSATIGNPEELAEWL----NAELIVSD-WRPVKLRRGVFYQGFVTWEDGSIDRFS 224 (720)
T ss_dssp GGCTTTHHHHHHHHHHHBTTBEEEEEECCCSCHHHHHHHT----TEEEEECC-CCSSEEEEEEEETTEEEETTSCEEECS
T ss_pred cCCCcccHHHHHHHHHhhcCCeEEEEcCCcCCHHHHHHHh----CCcccCCC-CCCCcceEEEEeCCeeeccccchhhhh
Confidence 7532 22234445558999999999853 2222221 22222211 1112222111 000 012
Q ss_pred HHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCC-------------------------------CeEEEEeCCC
Q 003260 480 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG-------------------------------VDIAIAHGQQ 528 (835)
Q Consensus 480 ~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~-------------------------------~~v~~lhg~m 528 (835)
.....+...+..+++++|||++++.++.++..|.+..+. ..+.++||+|
T Consensus 225 ~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l 304 (720)
T 2zj8_A 225 SWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGL 304 (720)
T ss_dssp STTHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTS
T ss_pred HHHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCC
Confidence 345556666778899999999999999999988764221 2499999999
Q ss_pred CHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEE----ec---CCCCChhHHHHHhcccCCCC--CceEEEEEe
Q 003260 529 YSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV----QD---VQQFGLAQLYQLRGRVGRAD--KEAHAYLFY 599 (835)
Q Consensus 529 ~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi----~d---~p~~sl~~l~Qr~GRaGR~g--~~G~ay~l~ 599 (835)
++.+|+.+++.|++|.++|||||+++++|||+|++++||+ || ...++..+|+||+|||||.| ..|.||+++
T Consensus 305 ~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~ 384 (720)
T 2zj8_A 305 GRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVS 384 (720)
T ss_dssp CHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEEC
T ss_pred CHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEe
Confidence 9999999999999999999999999999999999999997 55 22248999999999999988 589999999
Q ss_pred cCCC
Q 003260 600 PDKS 603 (835)
Q Consensus 600 ~~~~ 603 (835)
++.+
T Consensus 385 ~~~~ 388 (720)
T 2zj8_A 385 TSDD 388 (720)
T ss_dssp SSSC
T ss_pred cCcc
Confidence 8875
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-38 Score=399.28 Aligned_cols=309 Identities=20% Similarity=0.190 Sum_probs=231.0
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHH
Q 003260 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 350 (835)
Q Consensus 271 ~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~ 350 (835)
...+...++|+|+|+|.+||+.+.+ ++++|++||||||||++|+++++..+..+++++|++||++|+.|++++
T Consensus 174 ~~~~~~~~~f~ltp~Q~~AI~~i~~-------g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~ 246 (1108)
T 3l9o_A 174 RVNEARTYPFTLDPFQDTAISCIDR-------GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRE 246 (1108)
T ss_dssp CCSCSSCCSSCCCHHHHHHHHHHTT-------TCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred hHHHHHhCCCCCCHHHHHHHHHHHc-------CCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHH
Confidence 3455778999999999999999853 578999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----cccCCccEEEEcCccccchh-----
Q 003260 351 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFGVK----- 420 (835)
Q Consensus 351 ~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l~~~~l~llVIDEaHr~g~~----- 420 (835)
|.+.++ .+++++|+.+. +++++|+|+||+.|.+. ..+.++++|||||||+++..
T Consensus 247 l~~~~~-----~VglltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~ 310 (1108)
T 3l9o_A 247 LLAEFG-----DVGLMTGDITI-----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVV 310 (1108)
T ss_dssp HHHHTS-----SEEEECSSCBC-----------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHH
T ss_pred HHHHhC-----CccEEeCcccc-----------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHH
Confidence 998764 57888887652 25689999999987653 34678999999999987432
Q ss_pred hHHHHhhhcCCceEEEeecCCChh-hHHHHH-hcCCCcceecCCCCCccceeEEeccc----------------------
Q 003260 421 QKEKIASFKISVDVLTLSATPIPR-TLYLAL-TGFRDASLISTPPPERLPIKTHLSAF---------------------- 476 (835)
Q Consensus 421 ~~e~l~~l~~~~~vL~lSATp~p~-tl~~~~-~g~~d~s~I~~~p~~r~~v~~~~~~~---------------------- 476 (835)
....+..++.++++|+||||++.. .+.... .....+..+........++..++...
T Consensus 311 ~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~ 390 (1108)
T 3l9o_A 311 WEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQK 390 (1108)
T ss_dssp HHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHH
T ss_pred HHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHH
Confidence 334456667889999999996432 121221 11222222222222222332222100
Q ss_pred ----------------------------------CHHHHHHHHHHHHhc-CCeEEEEecCccChHHHHHHHHhhCC----
Q 003260 477 ----------------------------------SKEKVISAIKYELDR-GGQVFYVLPRIKGLEEPMDFLQQAFP---- 517 (835)
Q Consensus 477 ----------------------------------~~~~l~~~i~~~l~~-ggqvlVf~n~v~~~e~l~~~L~~~~p---- 517 (835)
....+...+...... ++++||||+++..|+.++..|.....
T Consensus 391 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~ 470 (1108)
T 3l9o_A 391 AMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDD 470 (1108)
T ss_dssp HHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC-
T ss_pred HHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHH
Confidence 022233333333333 36999999999999999988764200
Q ss_pred ---------------------------------CCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCcc
Q 003260 518 ---------------------------------GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564 (835)
Q Consensus 518 ---------------------------------~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~ 564 (835)
...|+++||+|++.+|+.+++.|.+|.++|||||+++++|||+|+++
T Consensus 471 e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~ 550 (1108)
T 3l9o_A 471 EKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKT 550 (1108)
T ss_dssp ---CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CE
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCce
Confidence 01289999999999999999999999999999999999999999999
Q ss_pred EEEEecCC-------CCChhHHHHHhcccCCCC--CceEEEEEecCC
Q 003260 565 TIIVQDVQ-------QFGLAQLYQLRGRVGRAD--KEAHAYLFYPDK 602 (835)
Q Consensus 565 ~VIi~d~p-------~~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~ 602 (835)
+||+++.+ ..+..+|+||+|||||.| ..|.||+++++.
T Consensus 551 ~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 551 VVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp EEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred EEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 99966543 125678999999999999 789999999876
No 24
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.7e-38 Score=377.39 Aligned_cols=317 Identities=20% Similarity=0.205 Sum_probs=237.1
Q ss_pred CCCCh-HHHHHHHhCCC-CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc-CCCEEEEEcccH
Q 003260 265 YPKNP-AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTI 341 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~-~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~-~g~qvlVLvPtr 341 (835)
++.++ +.+.+.. ++| .|+|+|.+|++.+.. .+++++++||||||||++|.++++..+. .+.+++|++|++
T Consensus 13 l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~------~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r 85 (715)
T 2va8_A 13 LKLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLL------EGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLR 85 (715)
T ss_dssp SSSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTT------TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCH
T ss_pred cCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhc------CCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcH
Confidence 45556 4455544 555 999999999987332 2578999999999999999999987765 788999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc----c-cccCCccEEEEcCccc
Q 003260 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS----R-VVYNNLGLLVVDEEQR 416 (835)
Q Consensus 342 ~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~----~-l~~~~l~llVIDEaHr 416 (835)
+||.|++++++ .+..+ |++++.++|+....++ .+ +.++|+|+||+.|.. . ..+.++++|||||+|+
T Consensus 86 ~La~q~~~~~~-~~~~~-g~~v~~~~G~~~~~~~-----~~--~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 156 (715)
T 2va8_A 86 ALTNEKYLTFK-DWELI-GFKVAMTSGDYDTDDA-----WL--KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHY 156 (715)
T ss_dssp HHHHHHHHHHG-GGGGG-TCCEEECCSCSSSCCG-----GG--GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGG
T ss_pred HHHHHHHHHHH-HhhcC-CCEEEEEeCCCCCchh-----hc--CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhh
Confidence 99999999995 56665 7899999997654331 11 358999999987753 2 2378999999999999
Q ss_pred cchh----hHHHHhhhcCCceEEEeecCCC-hhhHHHHHhcCCCcceecCCCCCccceeEE--------------eccc-
Q 003260 417 FGVK----QKEKIASFKISVDVLTLSATPI-PRTLYLALTGFRDASLISTPPPERLPIKTH--------------LSAF- 476 (835)
Q Consensus 417 ~g~~----~~e~l~~l~~~~~vL~lSATp~-p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~--------------~~~~- 476 (835)
++.. ..+.+.....+.++|+||||+. +..+...+. ...+.. +....++... +...
T Consensus 157 l~~~~~~~~l~~i~~~~~~~~ii~lSATl~n~~~~~~~l~----~~~~~~-~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 231 (715)
T 2va8_A 157 LNDPERGPVVESVTIRAKRRNLLALSATISNYKQIAKWLG----AEPVAT-NWRPVPLIEGVIYPERKKKEYNVIFKDNT 231 (715)
T ss_dssp GGCTTTHHHHHHHHHHHHTSEEEEEESCCTTHHHHHHHHT----CEEEEC-CCCSSCEEEEEEEECSSTTEEEEEETTSC
T ss_pred cCCcccchHHHHHHHhcccCcEEEEcCCCCCHHHHHHHhC----CCccCC-CCCCCCceEEEEecCCcccceeeecCcch
Confidence 7531 2233322223899999999986 333332221 222221 1111222111 1110
Q ss_pred -----CHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCC---------------------------------
Q 003260 477 -----SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG--------------------------------- 518 (835)
Q Consensus 477 -----~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~--------------------------------- 518 (835)
..+.....+.+.+..+++++|||+++++++.++..|.+..+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 311 (715)
T 2va8_A 232 TKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLI 311 (715)
T ss_dssp EEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHH
T ss_pred hhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHH
Confidence 024566777777788899999999999999999999876432
Q ss_pred -CeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEE----ec-------CCCCChhHHHHHhccc
Q 003260 519 -VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV----QD-------VQQFGLAQLYQLRGRV 586 (835)
Q Consensus 519 -~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi----~d-------~p~~sl~~l~Qr~GRa 586 (835)
..+.++||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+ +| .| .+.++|.||+|||
T Consensus 312 ~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~-~s~~~~~Qr~GRa 390 (715)
T 2va8_A 312 SKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDE-IPIMEYKQMSGRA 390 (715)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC---------------CHHHHHHHHTTB
T ss_pred hcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCc-CCHHHHHHHhhhc
Confidence 35999999999999999999999999999999999999999999999998 77 45 4899999999999
Q ss_pred CCCC--CceEEEEEecCCC
Q 003260 587 GRAD--KEAHAYLFYPDKS 603 (835)
Q Consensus 587 GR~g--~~G~ay~l~~~~~ 603 (835)
||.| ..|.||+++++.+
T Consensus 391 GR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 391 GRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp CCTTTCSCEEEEEECSCGG
T ss_pred CCCCCCCCceEEEEeCCch
Confidence 9988 4799999998764
No 25
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.3e-39 Score=371.03 Aligned_cols=318 Identities=21% Similarity=0.201 Sum_probs=215.0
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCC---CEEEEEcccHHHHHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG---KQAMVLAPTIVLAKQ 346 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g---~qvlVLvPtr~LA~Q 346 (835)
+.+.+.+.+...|+|+|.+|++.++++ .++++++++|||||||++|+.+++..+..+ ++++|++|+++|+.|
T Consensus 130 ~~~~l~~~g~~~p~~~Q~~ai~~i~~~-----~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q 204 (508)
T 3fho_A 130 XXXXXXXXXXXXXXKIQEKALPLLLSN-----PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQ 204 (508)
T ss_dssp ---------CEECCCTTSSSHHHHHCS-----SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHH
T ss_pred cccccccccccCcHHHHHHHHHHHHcC-----CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHH
Confidence 555666655568999999999998752 247899999999999999999999887553 489999999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCccccch--
Q 003260 347 HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFGV-- 419 (835)
Q Consensus 347 ~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaHr~g~-- 419 (835)
+++++.+.+... ++.+....++..... ....++|+|+||+.|.+ ...+.++++|||||||++..
T Consensus 205 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~ 275 (508)
T 3fho_A 205 IMDVVTEMGKYT-EVKTAFGIKDSVPKG--------AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQ 275 (508)
T ss_dssp HHHHHHHHSTTS-SCCEEC------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC-
T ss_pred HHHHHHHhCCcc-CeeEEEEeCCccccc--------ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccC
Confidence 999999854433 455555444322111 12358999999998764 34578899999999998643
Q ss_pred ----hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCc--cceeEEeccc-CHHHHHHHHHHHHh--
Q 003260 420 ----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LPIKTHLSAF-SKEKVISAIKYELD-- 490 (835)
Q Consensus 420 ----~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r--~~v~~~~~~~-~~~~l~~~i~~~l~-- 490 (835)
.....+..+..+.++|++|||+.+...........+...+....... ..+...+... ........+...+.
T Consensus 276 ~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~ 355 (508)
T 3fho_A 276 GLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLL 355 (508)
T ss_dssp -CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhc
Confidence 11223344566899999999998777666666666655554432211 1111122111 22223333333332
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEec
Q 003260 491 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570 (835)
Q Consensus 491 ~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d 570 (835)
.+++++|||++++.++.+++.|.+. +..+.++||+|+..+|+.+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~~--~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~ 433 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTAD--GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYD 433 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTTT--TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC--
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEEC
Confidence 4689999999999999999999987 78899999999999999999999999999999999999999999999999999
Q ss_pred CCC-----CChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 571 VQQ-----FGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 571 ~p~-----~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
.|. .+..+|+||+||+||.|+.|.|++|+++.+
T Consensus 434 ~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~ 471 (508)
T 3fho_A 434 MPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKK 471 (508)
T ss_dssp --CC-----CTHHHHHTTSCCC-----CEEEEEECTTT
T ss_pred CCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChH
Confidence 983 378999999999999999999999998543
No 26
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.4e-38 Score=367.91 Aligned_cols=312 Identities=16% Similarity=0.180 Sum_probs=177.6
Q ss_pred hCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-----CCEEEEEcccHHHHHHHHHHH
Q 003260 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-----GKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 277 ~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-----g~qvlVLvPtr~LA~Q~~~~~ 351 (835)
..+++|||+|.+|++.+++ ++++++++|||+|||++|+.+++..+.. +.+++|++||++|+.|+++.+
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~-------~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 75 (556)
T 4a2p_A 3 METKKARSYQIELAQPAIN-------GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVF 75 (556)
T ss_dssp -----CCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHc-------CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3568999999999999974 4689999999999999999999888765 778999999999999999999
Q ss_pred HHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----c-ccCCccEEEEcCccccchhh-HHH
Q 003260 352 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----V-VYNNLGLLVVDEEQRFGVKQ-KEK 424 (835)
Q Consensus 352 ~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l-~~~~l~llVIDEaHr~g~~~-~e~ 424 (835)
...+... ++++..++|+.+...+ +..+..+ ++|+|+||+.|.+. + .+.++++|||||||++.... ...
T Consensus 76 ~~~~~~~-~~~~~~~~g~~~~~~~---~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~ 150 (556)
T 4a2p_A 76 KHHFERQ-GYSVQGISGENFSNVS---VEKVIED-SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNV 150 (556)
T ss_dssp HHHHGGG-TCCEEECCCC-----C---HHHHHHH-CSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHH
T ss_pred HHHhccc-CceEEEEeCCCCcchh---HHHhhCC-CCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHH
Confidence 9866554 6899999998754432 2222333 89999999988742 3 56789999999999974321 111
Q ss_pred -Hhhh--------cCCceEEEeecCCChhh---H----HH--HHhcCCCcceecCCCCC--------ccceeEEe-cc--
Q 003260 425 -IASF--------KISVDVLTLSATPIPRT---L----YL--ALTGFRDASLISTPPPE--------RLPIKTHL-SA-- 475 (835)
Q Consensus 425 -l~~l--------~~~~~vL~lSATp~p~t---l----~~--~~~g~~d~s~I~~~p~~--------r~~v~~~~-~~-- 475 (835)
+..+ .+..++|+|||||.... . .. .+....+...+...... ..+..... ..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (556)
T 4a2p_A 151 LMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR 230 (556)
T ss_dssp HHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCC
T ss_pred HHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCC
Confidence 1111 35688999999995321 0 00 00001111111111100 00000000 00
Q ss_pred --------------------------------------------------------------------------------
Q 003260 476 -------------------------------------------------------------------------------- 475 (835)
Q Consensus 476 -------------------------------------------------------------------------------- 475 (835)
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (556)
T 4a2p_A 231 IHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRK 310 (556)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------------------------------------c-CHHHHHHHHHHHH--hcC
Q 003260 476 ------------------------------------------------------------F-SKEKVISAIKYEL--DRG 492 (835)
Q Consensus 476 ------------------------------------------------------------~-~~~~l~~~i~~~l--~~g 492 (835)
. ....+.+.+.... ..+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~ 390 (556)
T 4a2p_A 311 YNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQ 390 (556)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCC
Confidence 0 0001112222222 456
Q ss_pred CeEEEEecCccChHHHHHHHHhhC----------CCCeEEEEeCCCCHHHHHHHHHHhhc-CCeeEEEEcCcCCcCCCCC
Q 003260 493 GQVFYVLPRIKGLEEPMDFLQQAF----------PGVDIAIAHGQQYSRQLEETMEKFAQ-GAIKILICTNIVESGLDIQ 561 (835)
Q Consensus 493 gqvlVf~n~v~~~e~l~~~L~~~~----------p~~~v~~lhg~m~~~ere~vl~~F~~-g~~~ILVaT~iie~GIDIp 561 (835)
++++|||+++..++.+++.|.... .|.....+||+|+..+|..++++|++ |+++|||||+++++|||+|
T Consensus 391 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip 470 (556)
T 4a2p_A 391 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 470 (556)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC---------
T ss_pred ceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCch
Confidence 899999999999999999998751 13455566888999999999999999 9999999999999999999
Q ss_pred CccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 562 ~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
++++||++|.|. ++.+|+||+|| ||. +.|.||+|+++.+
T Consensus 471 ~v~~VI~~d~p~-s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~ 509 (556)
T 4a2p_A 471 QCNLVVLYEYSG-NVTKMIQVRGR-GRA-AGSKCILVTSKTE 509 (556)
T ss_dssp --CEEEEETCCS-CHHHHHHC----------CCEEEEESCHH
T ss_pred hCCEEEEeCCCC-CHHHHHHhcCC-CCC-CCceEEEEEeCcc
Confidence 999999999995 99999999999 999 7899999998764
No 27
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=5.3e-38 Score=392.82 Aligned_cols=282 Identities=18% Similarity=0.235 Sum_probs=220.9
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHH
Q 003260 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 350 (835)
Q Consensus 271 ~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~ 350 (835)
.+.+...++|+|||+|.+|++.+++ ++|++++||||||||++|+.+++..+..+.+++|++||++||.|++++
T Consensus 68 ~~~~~~~~gf~pt~iQ~~ai~~il~-------g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~ 140 (1104)
T 4ddu_A 68 RSFFKKKFGKDLTGYQRLWAKRIVQ-------GKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLER 140 (1104)
T ss_dssp HHHHHHHSSSCCCHHHHHHHHHHTT-------TCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHc-------CCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHH
Confidence 3456677889999999999999864 479999999999999999999998888899999999999999999999
Q ss_pred HHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc---cccCCccEEEEcCcccc----------
Q 003260 351 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR---VVYNNLGLLVVDEEQRF---------- 417 (835)
Q Consensus 351 ~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~---l~~~~l~llVIDEaHr~---------- 417 (835)
+.+ |+ ..+++++.++|+.+..++...+..+.+|.++|+|+||+.|.+. +.+.++++|||||||++
T Consensus 141 l~~-l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~ 218 (1104)
T 4ddu_A 141 LQK-LA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTL 218 (1104)
T ss_dssp HHT-TS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHH
T ss_pred HHH-hh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhh
Confidence 998 66 4579999999999988888888999999999999999998553 45689999999999973
Q ss_pred ----chhh---HHHHhhhc-----------CCceEEEeecCCChhhHH-HHHhcCCCcceecCCCCCccceeEEe-cccC
Q 003260 418 ----GVKQ---KEKIASFK-----------ISVDVLTLSATPIPRTLY-LALTGFRDASLISTPPPERLPIKTHL-SAFS 477 (835)
Q Consensus 418 ----g~~~---~e~l~~l~-----------~~~~vL~lSATp~p~tl~-~~~~g~~d~s~I~~~p~~r~~v~~~~-~~~~ 477 (835)
|+.. ...+..++ .+.+++++|||+.|.... ..........+.... .....+...+ ....
T Consensus 219 L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~~-~~~~~i~~~~~~~~k 297 (1104)
T 4ddu_A 219 LMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLV-SVARNITHVRISSRS 297 (1104)
T ss_dssp HHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBCC-CCCCCEEEEEESCCC
T ss_pred hHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccCC-CCcCCceeEEEecCH
Confidence 3321 22333334 678999999997665432 122222222221111 1122233332 2223
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEE-EEeCCCCHHHHHHHHHHhhcCCeeEEEE----cC
Q 003260 478 KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIA-IAHGQQYSRQLEETMEKFAQGAIKILIC----TN 552 (835)
Q Consensus 478 ~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~-~lhg~m~~~ere~vl~~F~~g~~~ILVa----T~ 552 (835)
...+.+.+.. .+++++||||+++.++.++..|... ++.+. .+||+ |.+ +++|++|+++|||| |+
T Consensus 298 ~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~--g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~Td 366 (1104)
T 4ddu_A 298 KEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRF--KFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYG 366 (1104)
T ss_dssp HHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHT--TCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHH
T ss_pred HHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhC--CCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCC
Confidence 3444444444 4689999999999999999999998 88898 99993 455 99999999999999 99
Q ss_pred cCCcCCCCCC-ccEEEEecCCC
Q 003260 553 IVESGLDIQN-ANTIIVQDVQQ 573 (835)
Q Consensus 553 iie~GIDIp~-v~~VIi~d~p~ 573 (835)
++++|||+|+ |++||++|.|.
T Consensus 367 vlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 367 KLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHCCSCCCTTTCCEEEEESCCE
T ss_pred eeEecCcCCCCCCEEEEECCCC
Confidence 9999999999 99999999997
No 28
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=7.7e-38 Score=362.81 Aligned_cols=310 Identities=20% Similarity=0.252 Sum_probs=204.3
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-----CCEEEEEcccHHHHHHHHHHHHH
Q 003260 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-----GKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 279 ~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-----g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
+++|+|+|.+|++.+++ ++++++++|||+|||++|+.+++..+.. +.+++|++||++|+.|+++.+.+
T Consensus 2 ~~~~~~~Q~~~i~~~~~-------~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 74 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKK-------GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSR 74 (555)
T ss_dssp CCCCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhC-------CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 58999999999999874 4689999999999999999999888765 77899999999999999999998
Q ss_pred hhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----c-ccCCccEEEEcCccccchhh-HHH--
Q 003260 354 RFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----V-VYNNLGLLVVDEEQRFGVKQ-KEK-- 424 (835)
Q Consensus 354 ~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l-~~~~l~llVIDEaHr~g~~~-~e~-- 424 (835)
.+... ++++..++|+.+...+.. .+.. .++|+|+||+.|.+. + .+.++++|||||||++.... ...
T Consensus 75 ~~~~~-~~~~~~~~g~~~~~~~~~---~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~ 149 (555)
T 3tbk_A 75 YFERL-GYNIASISGATSDSVSVQ---HIIE-DNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIM 149 (555)
T ss_dssp HHHTT-TCCEEEECTTTGGGSCHH---HHHH-HCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHH
T ss_pred HhccC-CcEEEEEcCCCcchhhHH---HHhc-CCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHH
Confidence 76655 789999999875544322 2222 389999999988653 2 56788999999999974321 111
Q ss_pred ---Hhhh-----cCCceEEEeecCCChhh-------HH--HHHhcCCCcceecCCCCC--------ccceeEEe-cc---
Q 003260 425 ---IASF-----KISVDVLTLSATPIPRT-------LY--LALTGFRDASLISTPPPE--------RLPIKTHL-SA--- 475 (835)
Q Consensus 425 ---l~~l-----~~~~~vL~lSATp~p~t-------l~--~~~~g~~d~s~I~~~p~~--------r~~v~~~~-~~--- 475 (835)
+... ....++++|||||.... .. ..+....+...+...... ..+..... ..
T Consensus 150 ~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 229 (555)
T 3tbk_A 150 FRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRT 229 (555)
T ss_dssp HHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCS
T ss_pred HHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcc
Confidence 1111 25578999999995421 11 011111121112111100 00000000 00
Q ss_pred --------------------------------------------------------------------------------
Q 003260 476 -------------------------------------------------------------------------------- 475 (835)
Q Consensus 476 -------------------------------------------------------------------------------- 475 (835)
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (555)
T 3tbk_A 230 SNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRK 309 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -------------------------------------------------------------cCHHHHHHHHHHHH--hcC
Q 003260 476 -------------------------------------------------------------FSKEKVISAIKYEL--DRG 492 (835)
Q Consensus 476 -------------------------------------------------------------~~~~~l~~~i~~~l--~~g 492 (835)
.....+.+.+.... ..+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~ 389 (555)
T 3tbk_A 310 YNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPE 389 (555)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCC
Confidence 00011112222222 234
Q ss_pred CeEEEEecCccChHHHHHHHHhhC----------CCCeEEEEeCCCCHHHHHHHHHHhhc-CCeeEEEEcCcCCcCCCCC
Q 003260 493 GQVFYVLPRIKGLEEPMDFLQQAF----------PGVDIAIAHGQQYSRQLEETMEKFAQ-GAIKILICTNIVESGLDIQ 561 (835)
Q Consensus 493 gqvlVf~n~v~~~e~l~~~L~~~~----------p~~~v~~lhg~m~~~ere~vl~~F~~-g~~~ILVaT~iie~GIDIp 561 (835)
++++|||+++..++.+++.|.... .|.....+||+|++.+|..++++|++ |+++|||||+++++|||+|
T Consensus 390 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp 469 (555)
T 3tbk_A 390 TKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIA 469 (555)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETT
T ss_pred ceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccc
Confidence 899999999999999999998751 13345556779999999999999999 9999999999999999999
Q ss_pred CccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 562 ~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
++++||++|.|. ++.+|+||+|| ||. +.|.||+|+++.+
T Consensus 470 ~v~~VI~~d~p~-s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~ 508 (555)
T 3tbk_A 470 ECNLVILYEYVG-NVIKMIQTRGR-GRA-RDSKCFLLTSSAD 508 (555)
T ss_dssp SCSEEEEESCCS-SCCCEECSSCC-CTT-TSCEEEEEESCHH
T ss_pred cCCEEEEeCCCC-CHHHHHHhcCc-CcC-CCceEEEEEcCCC
Confidence 999999999995 99999999999 998 8999999998764
No 29
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-37 Score=379.79 Aligned_cols=303 Identities=20% Similarity=0.207 Sum_probs=228.4
Q ss_pred HHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHh
Q 003260 275 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSER 354 (835)
Q Consensus 275 ~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~ 354 (835)
...++|+|+|+|.+|++.+.+ ++++++++|||||||++|+.+++..+..+.+++|++||++|+.|++++|.+.
T Consensus 80 ~~~~~f~L~~~Q~eai~~l~~-------g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 80 ARTYPFTLDPFQDTAISCIDR-------GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp SCCCSSCCCHHHHHHHHHHHH-------TCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHc-------CCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHH
Confidence 467889999999999999875 4689999999999999999999998888999999999999999999999987
Q ss_pred hcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCccccch-----hhHHH
Q 003260 355 FSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFGV-----KQKEK 424 (835)
Q Consensus 355 f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaHr~g~-----~~~e~ 424 (835)
|+ .+++++|+.+.. .+++|+|+||+.|.+ ...+.++++|||||+|+++. .....
T Consensus 153 ~~-----~vglltGd~~~~-----------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~i 216 (1010)
T 2xgj_A 153 FG-----DVGLMTGDITIN-----------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEET 216 (1010)
T ss_dssp HS-----CEEEECSSCEEC-----------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHH
T ss_pred hC-----CEEEEeCCCccC-----------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHH
Confidence 64 678888875432 348999999987754 24568999999999998743 23344
Q ss_pred HhhhcCCceEEEeecCCChhh-HHHHHhc-CC-CcceecCCCCCccceeEEeccc---------------C---------
Q 003260 425 IASFKISVDVLTLSATPIPRT-LYLALTG-FR-DASLISTPPPERLPIKTHLSAF---------------S--------- 477 (835)
Q Consensus 425 l~~l~~~~~vL~lSATp~p~t-l~~~~~g-~~-d~s~I~~~p~~r~~v~~~~~~~---------------~--------- 477 (835)
+..++.++++|+||||++... +...+.. .. ...++.. +....++..++... .
T Consensus 217 l~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~-~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1010)
T 2xgj_A 217 IILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYT-NFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMA 295 (1010)
T ss_dssp HHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEE-CCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHH
T ss_pred HHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEec-CCCcccceEEEEecCCcceeeeeccccccchHHHHHHHH
Confidence 556677899999999974422 1111111 11 1222221 11222222221100 0
Q ss_pred --------------------------------HHHHHHHHHHHHhcC-CeEEEEecCccChHHHHHHHHhhC-C------
Q 003260 478 --------------------------------KEKVISAIKYELDRG-GQVFYVLPRIKGLEEPMDFLQQAF-P------ 517 (835)
Q Consensus 478 --------------------------------~~~l~~~i~~~l~~g-gqvlVf~n~v~~~e~l~~~L~~~~-p------ 517 (835)
...+...+......+ ++++|||+++..|+.++..|.... .
T Consensus 296 ~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~ 375 (1010)
T 2xgj_A 296 SISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKE 375 (1010)
T ss_dssp TCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHH
T ss_pred HHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHH
Confidence 111122222222333 589999999999999988886520 0
Q ss_pred ------------------------------CCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEE
Q 003260 518 ------------------------------GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567 (835)
Q Consensus 518 ------------------------------~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VI 567 (835)
...|+++||+|++.+|+.+++.|++|.++|||||+++++|||+|++++||
T Consensus 376 ~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI 455 (1010)
T 2xgj_A 376 ALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVF 455 (1010)
T ss_dssp HHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEE
T ss_pred HHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEE
Confidence 01389999999999999999999999999999999999999999999999
Q ss_pred E----ecC----CCCChhHHHHHhcccCCCCC--ceEEEEEecCC
Q 003260 568 V----QDV----QQFGLAQLYQLRGRVGRADK--EAHAYLFYPDK 602 (835)
Q Consensus 568 i----~d~----p~~sl~~l~Qr~GRaGR~g~--~G~ay~l~~~~ 602 (835)
+ ||. | ++..+|+||+||+||.|. .|.||+++++.
T Consensus 456 ~~~~kfd~~~~rp-~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 456 TSVRKWDGQQFRW-VSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp SCSEEECSSCEEE-CCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred eCCcccCCcCCcc-CCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 8 887 5 389999999999999996 59999999865
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.4e-37 Score=345.22 Aligned_cols=307 Identities=20% Similarity=0.280 Sum_probs=227.6
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc-CCCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~-~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~ 358 (835)
++|+|+|.++++.+++ + ++++++|||+|||++++.++...+. .+.+++|++|+++|+.||++++.+.++ .
T Consensus 8 ~~l~~~Q~~~i~~~~~-------~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~-~ 78 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE-------T-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFN-L 78 (494)
T ss_dssp HCCCHHHHHHHHHGGG-------S-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBC-S
T ss_pred CCccHHHHHHHHHHhh-------C-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhC-c
Confidence 5899999999988764 2 7999999999999999998877654 578999999999999999999998553 3
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCccccchh-h----HHHHhhh
Q 003260 359 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFGVK-Q----KEKIASF 428 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaHr~g~~-~----~e~l~~l 428 (835)
++.++..++|.....++...+. .++|+|+||+.|.. .+.+.++++||+||||++... . ...+...
T Consensus 79 ~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~ 153 (494)
T 1wp9_A 79 PPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQ 153 (494)
T ss_dssp CGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred chhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhc
Confidence 4568999999877765544432 47999999998865 345788999999999997431 1 1223344
Q ss_pred cCCceEEEeecCCCh--hhHHHHHhcCC--CcceecCCCCC------ccceeEEec------------------------
Q 003260 429 KISVDVLTLSATPIP--RTLYLALTGFR--DASLISTPPPE------RLPIKTHLS------------------------ 474 (835)
Q Consensus 429 ~~~~~vL~lSATp~p--~tl~~~~~g~~--d~s~I~~~p~~------r~~v~~~~~------------------------ 474 (835)
....++++|||||.. ..+......+. ........... .........
T Consensus 154 ~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (494)
T 1wp9_A 154 AKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPL 233 (494)
T ss_dssp CSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999972 22222221111 00000000000 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 003260 475 -------------------------------------------------------------------------------- 474 (835)
Q Consensus 475 -------------------------------------------------------------------------------- 474 (835)
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (494)
T 1wp9_A 234 AETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGST 313 (494)
T ss_dssp HHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccc
Confidence
Q ss_pred --------------------------cc--CHHHHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEE
Q 003260 475 --------------------------AF--SKEKVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA 524 (835)
Q Consensus 475 --------------------------~~--~~~~l~~~i~~~l--~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~l 524 (835)
.. ....+.+.+.... ..+++++|||+++..++.+++.|... ++.+..+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~--~~~~~~~ 391 (494)
T 1wp9_A 314 KASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD--GIKAKRF 391 (494)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT--TCCEEEE
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc--CCCcEEE
Confidence 00 0011222222222 35789999999999999999999998 8899999
Q ss_pred eC--------CCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEE
Q 003260 525 HG--------QQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAY 596 (835)
Q Consensus 525 hg--------~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay 596 (835)
|| +|+..+|+.+++.|++|+.+|||||+++++|+|+|++++||+++.|. ++..|.||+||+||.|+ |.+|
T Consensus 392 ~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~-~~~~~~Qr~GR~~R~g~-g~~~ 469 (494)
T 1wp9_A 392 VGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP-SAIRSIQRRGRTGRHMP-GRVI 469 (494)
T ss_dssp CCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCH-HHHHHHHHHTTSCSCCC-SEEE
T ss_pred eccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCC-CHHHHHHHHhhccCCCC-ceEE
Confidence 99 99999999999999999999999999999999999999999999984 99999999999999997 9999
Q ss_pred EEecCCCc
Q 003260 597 LFYPDKSL 604 (835)
Q Consensus 597 ~l~~~~~~ 604 (835)
.|+++++.
T Consensus 470 ~l~~~~t~ 477 (494)
T 1wp9_A 470 ILMAKGTR 477 (494)
T ss_dssp EEEETTSH
T ss_pred EEEecCCH
Confidence 99998754
No 31
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=4.4e-38 Score=381.41 Aligned_cols=409 Identities=16% Similarity=0.196 Sum_probs=279.5
Q ss_pred CCCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHH-HcC--CCEEEEEcc
Q 003260 264 PYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV-VSA--GKQAMVLAP 339 (835)
Q Consensus 264 ~~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~-l~~--g~qvlVLvP 339 (835)
.++.++ +.+.+...+ ..|++.|+++|..++.. +.+++++||||||||++.-..+... ... +.+++|++|
T Consensus 76 ~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~------~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P 148 (773)
T 2xau_A 76 GREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQN------NQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQP 148 (773)
T ss_dssp CSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHH------CSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEES
T ss_pred ccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhC------CCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCc
Confidence 344555 666666666 67999999999988752 4689999999999999432222222 122 678999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc----ccccCCccEEEEcCcc
Q 003260 340 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 340 tr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~----~l~~~~l~llVIDEaH 415 (835)
+++|+.|+++++.+.++...+..+++..++.. ......+|+++|++.+.+ ...+.++++|||||+|
T Consensus 149 ~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~----------~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah 218 (773)
T 2xau_A 149 RRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN----------KTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAH 218 (773)
T ss_dssp CHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE----------ECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGG
T ss_pred hHHHHHHHHHHHHHHhCCchhheecceecccc----------ccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCcc
Confidence 99999999999887665433445554433221 112458999999998764 3457899999999999
Q ss_pred ccch------hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCccceeEEecccCH----HHHHHHH
Q 003260 416 RFGV------KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSK----EKVISAI 485 (835)
Q Consensus 416 r~g~------~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~~~~~~----~~l~~~i 485 (835)
..+. .....+....++.++|+||||+.+..+. ..+.+..++.. +....++..++..... ...+..+
T Consensus 219 ~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~---~~~~~~~vi~v-~gr~~pv~~~~~~~~~~~~~~~~l~~l 294 (773)
T 2xau_A 219 ERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ---RYFNDAPLLAV-PGRTYPVELYYTPEFQRDYLDSAIRTV 294 (773)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH---HHTTSCCEEEC-CCCCCCEEEECCSSCCSCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH---HHhcCCCcccc-cCcccceEEEEecCCchhHHHHHHHHH
Confidence 6221 2233344455788999999999765443 23344555544 3445677766544322 2233334
Q ss_pred HHHHh--cCCeEEEEecCccChHHHHHHHHhh---------CCCCeEEEEeCCCCHHHHHHHHHHhh-----cCCeeEEE
Q 003260 486 KYELD--RGGQVFYVLPRIKGLEEPMDFLQQA---------FPGVDIAIAHGQQYSRQLEETMEKFA-----QGAIKILI 549 (835)
Q Consensus 486 ~~~l~--~ggqvlVf~n~v~~~e~l~~~L~~~---------~p~~~v~~lhg~m~~~ere~vl~~F~-----~g~~~ILV 549 (835)
..... .++++|||||++++++.+++.|.+. .+++.+.++||+|++.+|..+++.|. +|.++|||
T Consensus 295 ~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlV 374 (773)
T 2xau_A 295 LQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVI 374 (773)
T ss_dssp HHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEE
T ss_pred HHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEE
Confidence 33332 4789999999999999999999851 25788999999999999999999999 99999999
Q ss_pred EcCcCCcCCCCCCccEEEEecC------------------CCCChhHHHHHhcccCCCCCceEEEEEecCCCcCCHHHHH
Q 003260 550 CTNIVESGLDIQNANTIIVQDV------------------QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALE 611 (835)
Q Consensus 550 aT~iie~GIDIp~v~~VIi~d~------------------p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~ 611 (835)
||+++++|||+|++++||+++. |. +.++|.||+||+||. +.|.||+|+++.+........
T Consensus 375 AT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~-S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~~~~l~~~ 452 (773)
T 2xau_A 375 STNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPI-SKASAQQRAGRAGRT-RPGKCFRLYTEEAFQKELIEQ 452 (773)
T ss_dssp ECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEEC-CHHHHHHHHHGGGSS-SSEEEEESSCHHHHHHTSCSS
T ss_pred eCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccC-CHHHHHhhccccCCC-CCCEEEEEecHHHhccccccc
Confidence 9999999999999999999776 54 889999999999999 799999999754320000000
Q ss_pred HHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHHHHHHHHHHHHhcccccccccccCcceEEeeecCCC
Q 003260 612 RLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691 (835)
Q Consensus 612 rl~~i~~~~~l~sg~~la~~dl~irg~g~~lg~~q~g~~~~vg~~~y~~~l~~ai~~~~~~~~~~~~~g~~~~~l~idp~ 691 (835)
..+.|.+.+. ....+..+.+ |.+++........+....+.-..+.|. .+..++.+ ...|++|..++.+|+||.
T Consensus 453 ~~pEi~r~~L--~~~~L~l~~~---gi~~~~~f~~~~~p~~~~i~~a~~~L~-~lgald~~-~~lT~lG~~~a~~pl~p~ 525 (773)
T 2xau_A 453 SYPEILRSNL--SSTVLELKKL---GIDDLVHFDFMDPPAPETMMRALEELN-YLACLDDE-GNLTPLGRLASQFPLDPM 525 (773)
T ss_dssp CCCGGGGSCC--HHHHHHHHHT---TCCCGGGCCCSSCCCHHHHHHHHHHHH-HTTSBCTT-SCBCHHHHHHTTSSSCHH
T ss_pred CCCccccCcH--HHHHHHHHHc---CCCChhhccccCCCcHHHHHHHHHHHH-HcCCcccC-CCcChhhhhhccccCCHH
Confidence 0111211111 2333434433 445555444433333323333333333 34444432 346889999999999999
Q ss_pred CccccccccCC
Q 003260 692 LPSEYINHLEN 702 (835)
Q Consensus 692 ~~~~~i~~~~~ 702 (835)
+++.++.+...
T Consensus 526 ~~~~l~~~~~~ 536 (773)
T 2xau_A 526 LAVMLIGSFEF 536 (773)
T ss_dssp HHHHHHHGGGG
T ss_pred HHHHHHhhccc
Confidence 99998877544
No 32
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2.3e-37 Score=352.37 Aligned_cols=295 Identities=21% Similarity=0.230 Sum_probs=208.3
Q ss_pred CCcEEEEccCCCcccHHHHHHHH-HHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003260 303 PMDRLICGDVGFGKTEVALRAIF-CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l-~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
++++|++||||||||++|+++++ ..+..+.+++|++||++||.|+++.+. ++.+.+.++....
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~--------- 65 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS--------- 65 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC---------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc---------
Confidence 57899999999999999988888 556778899999999999999987764 3567766664221
Q ss_pred hhcCCcceeeccHHHhh----cccccCCccEEEEcCccccc---hhhHHHHhhh--cCCceEEEeecCCChhhHHHHHhc
Q 003260 382 IKHGHLNIIVGTHSLLG----SRVVYNNLGLLVVDEEQRFG---VKQKEKIASF--KISVDVLTLSATPIPRTLYLALTG 452 (835)
Q Consensus 382 l~~G~~dIIVgT~~~L~----~~l~~~~l~llVIDEaHr~g---~~~~e~l~~l--~~~~~vL~lSATp~p~tl~~~~~g 452 (835)
.......+.+.|++.+. ....+.++++|||||+|+++ ..+...+... ..+.++|+|||||++....+
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~---- 141 (431)
T 2v6i_A 66 ERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAF---- 141 (431)
T ss_dssp ---CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSS----
T ss_pred cCCCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhh----
Confidence 11222345556766443 24558899999999999996 3444555544 45899999999998642111
Q ss_pred CCCcceecCCCCCccceeEEeccc---CHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCC
Q 003260 453 FRDASLISTPPPERLPIKTHLSAF---SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 529 (835)
Q Consensus 453 ~~d~s~I~~~p~~r~~v~~~~~~~---~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~ 529 (835)
+..+.++....... ....+.+.+. ..+++++||||++++++.+++.|+.. ++++..+||+
T Consensus 142 ----------~~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~-- 204 (431)
T 2v6i_A 142 ----------PPSNSPIIDEETRIPDKAWNSGYEWIT---EFDGRTVWFVHSIKQGAEIGTCLQKA--GKKVLYLNRK-- 204 (431)
T ss_dssp ----------CCCSSCCEEEECCCCSSCCSSCCHHHH---SCSSCEEEECSSHHHHHHHHHHHHHT--TCCEEEESTT--
T ss_pred ----------cCCCCceeeccccCCHHHHHHHHHHHH---cCCCCEEEEeCCHHHHHHHHHHHHHc--CCeEEEeCCc--
Confidence 11122222211111 1112223322 24789999999999999999999998 8899999998
Q ss_pred HHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccE-----------------EEEecCCCCChhHHHHHhcccCCCCCc
Q 003260 530 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT-----------------IIVQDVQQFGLAQLYQLRGRVGRADKE 592 (835)
Q Consensus 530 ~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~-----------------VIi~d~p~~sl~~l~Qr~GRaGR~g~~ 592 (835)
+|++++++|++|+++|||||+++++|||+| +.+ ||+++.| +++++|+||+||+||.|..
T Consensus 205 --~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p-~~~~~~~Qr~GR~GR~g~~ 280 (431)
T 2v6i_A 205 --TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIA-ITPASAAQRRGRIGRNPEK 280 (431)
T ss_dssp --THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEE-CCHHHHHHHHTTSSCCTTC
T ss_pred --cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeeccccc-CCHHHHHHhhhccCCCCCC
Confidence 578899999999999999999999999999 655 4566677 4999999999999999854
Q ss_pred eEE-EEEecCCCcCC------HHHHHHHHHHHHHhhcccchhh----hhhhhccccCCCcc
Q 003260 593 AHA-YLFYPDKSLLS------DQALERLAALEECRELGQGFQL----AEKDMGIRGFGTIF 642 (835)
Q Consensus 593 G~a-y~l~~~~~~~~------~~a~~rl~~i~~~~~l~sg~~l----a~~dl~irg~g~~l 642 (835)
+.| +++..+..... ..+..|+..+ ...+||.+ +.+|+.+++.|++.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~ 337 (431)
T 2v6i_A 281 LGDIYAYSGNVSSDNEGHVSWTEARMLLDNV----HVQGGVVAQLYTPEREKTEAYEGEFK 337 (431)
T ss_dssp CCCEEEECSCCCCCCTTBHHHHHHHHHHTTC----CCTTSCCCCCCGGGGGGCCCCTTTTC
T ss_pred CCeEEEEcCCCCCccchhHHHHHHHHHHhhc----CCCCCcceeccchhhhccCCCCCcee
Confidence 444 44443322111 1344555554 34578988 78899899988763
No 33
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3.8e-36 Score=373.04 Aligned_cols=409 Identities=17% Similarity=0.202 Sum_probs=270.7
Q ss_pred CCCCCCCCCcccccccccEEEeeEEEeecCCCCCccceEEEEEcCC-CcccChhhHhHHHhhhcCCCCCCchHHHhccCC
Q 003260 150 DPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYNLPNETKRPRTLSKLSD 228 (835)
Q Consensus 150 ~~~~~~~gd~vvh~~~Gig~~~g~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~l~~ 228 (835)
+..++++||+|+|.+ |++.++.-.... +....|+. .|.++ ..++++.+. .+..+|.. ....+++..
T Consensus 51 ~r~~~~~gd~v~~~~---g~~~~v~~~~~~--~g~~~y~~-~~~~~~~~~~~~~e~-~l~~~~~~------~~~~~rl~~ 117 (968)
T 3dmq_A 51 TRVMFNPGDTITSHD---GWQMQVEEVKEE--NGLLTYIG-TRLDTEESGVALREV-FLDSKLVF------SKPQDRLFA 117 (968)
T ss_dssp EECCCCTTCEEEBTT---SCEEEEEEEECS--SSCCEEEE-EETTTCCCSEEEEGG-GBCSSCCC------CCHHHHTTC
T ss_pred eeEEcCCCCEEEcCC---CcEEEEEEEEec--CCcEEEEE-eccCCCcccccccHh-hhcccccc------CCHHHHHhh
Confidence 334899999999988 788887632211 33567874 55544 455666664 33444432 134566653
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCChHHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEE
Q 003260 229 TTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLI 308 (835)
Q Consensus 229 ~~~w~~~k~~~~~~~~~~~~~l~~l~~~r~~~~~~~~~~~~l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll 308 (835)
..|...... +...+.++.+..+.......+. ...++|+|+|.+++..++... ++++|+
T Consensus 118 -~~~~~~~~~------~l~~~~~~~~~~~~~~~~~~l~----------~~~~~LrpyQ~eav~~~l~~~-----~~~~LL 175 (968)
T 3dmq_A 118 -GQIDRMDRF------ALRYRARKYSSEQFRMPYSGLR----------GQRTSLIPHQLNIAHDVGRRH-----APRVLL 175 (968)
T ss_dssp -SSCCCHHHH------TTHHHHHHHHHHHHTCSSCSSS----------CCSSCCCHHHHHHHHHHHHSS-----SCEEEE
T ss_pred -cCCCCchHH------HHHHHHHHHHHHhhcCcccccc----------CCCCCCcHHHHHHHHHHHHhc-----CCCEEE
Confidence 556544321 1112234444444433332222 134799999999999887632 467999
Q ss_pred EccCCCcccHHHHHHHHHHHcCCC--EEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCC
Q 003260 309 CGDVGFGKTEVALRAIFCVVSAGK--QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386 (835)
Q Consensus 309 ~a~TGsGKT~val~a~l~~l~~g~--qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~ 386 (835)
+++||+|||.+++.++...+..+. +++||||+ .|+.||..++.++| ++.+.++++...... ..........
T Consensus 176 ad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f----~l~v~v~~~~~~~~~--~~~~~~~~~~ 248 (968)
T 3dmq_A 176 ADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRF----NLRFALFDDERYAEA--QHDAYNPFDT 248 (968)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHS----CCCCEECCHHHHHHH--HHTTCSSSTT
T ss_pred ECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHh----CCCEEEEccchhhhh--hhhccccccc
Confidence 999999999999988887776665 99999999 99999999998877 456666655321110 0000011134
Q ss_pred cceeeccHHHhhcc------cccCCccEEEEcCccccchhh------HHHHhhhc-CCceEEEeecCCChhhHH----H-
Q 003260 387 LNIIVGTHSLLGSR------VVYNNLGLLVVDEEQRFGVKQ------KEKIASFK-ISVDVLTLSATPIPRTLY----L- 448 (835)
Q Consensus 387 ~dIIVgT~~~L~~~------l~~~~l~llVIDEaHr~g~~~------~e~l~~l~-~~~~vL~lSATp~p~tl~----~- 448 (835)
.+|+|+|++.+... +...++++|||||||++.... ...+..+. ...++++|||||.+.... +
T Consensus 249 ~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll 328 (968)
T 3dmq_A 249 EQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARL 328 (968)
T ss_dssp CSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHH
T ss_pred CCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHH
Confidence 78999999999653 345689999999999985422 33444443 445799999999652110 0
Q ss_pred --------------------------HHhcCCCcc------------ee----------cCCCC----------------
Q 003260 449 --------------------------ALTGFRDAS------------LI----------STPPP---------------- 464 (835)
Q Consensus 449 --------------------------~~~g~~d~s------------~I----------~~~p~---------------- 464 (835)
....+.+.. .+ ...+.
T Consensus 329 ~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~ll 408 (968)
T 3dmq_A 329 RLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLM 408 (968)
T ss_dssp HHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHG
T ss_pred HhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHH
Confidence 000000000 00 00000
Q ss_pred ------------CccceeE--------Eec---------------------------------------------ccCHH
Q 003260 465 ------------ERLPIKT--------HLS---------------------------------------------AFSKE 479 (835)
Q Consensus 465 ------------~r~~v~~--------~~~---------------------------------------------~~~~~ 479 (835)
.+..+.. ... .....
T Consensus 409 d~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~ 488 (968)
T 3dmq_A 409 DRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFD 488 (968)
T ss_dssp GGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTS
T ss_pred HhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCcc
Confidence 0000000 000 00111
Q ss_pred HHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCC--eeEEEEcCcCC
Q 003260 480 KVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGA--IKILICTNIVE 555 (835)
Q Consensus 480 ~l~~~i~~~l--~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~--~~ILVaT~iie 555 (835)
.....+.+.+ ..+++++|||+++..++.+++.|.... ++++..+||+|++.+|+.+++.|++|+ ++|||||++++
T Consensus 489 ~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~-g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~ 567 (968)
T 3dmq_A 489 PRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRERE-GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGS 567 (968)
T ss_dssp HHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTT-CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTT
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhh
Confidence 2233333333 357899999999999999999999643 789999999999999999999999998 99999999999
Q ss_pred cCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEE--ecCC
Q 003260 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLF--YPDK 602 (835)
Q Consensus 556 ~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l--~~~~ 602 (835)
+|+|+|++++||++++| |++.+|+|++||+||.|+.|.|+++ +...
T Consensus 568 ~GlDl~~~~~VI~~d~p-~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~ 615 (968)
T 3dmq_A 568 EGRNFQFASHMVMFDLP-FNPDLLEQRIGRLDRIGQAHDIQIHVPYLEK 615 (968)
T ss_dssp CSSCCTTCCEEECSSCC-SSHHHHHHHHHTTSCSSSCSCCEEEEEEETT
T ss_pred cCCCcccCcEEEEecCC-CCHHHHHHHhhccccCCCCceEEEEEecCCC
Confidence 99999999999999999 6999999999999999988865554 4444
No 34
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=6.3e-37 Score=367.47 Aligned_cols=315 Identities=20% Similarity=0.235 Sum_probs=191.5
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCC-----CEEEEEcccHHHHHHHH
Q 003260 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-----KQAMVLAPTIVLAKQHF 348 (835)
Q Consensus 274 ~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g-----~qvlVLvPtr~LA~Q~~ 348 (835)
+...+...|+|+|.++++.+++ ++|+|+++|||+|||++|+++++..+..+ .+++|++||++|+.|++
T Consensus 6 l~~~g~~~lr~~Q~~~i~~~l~-------g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~ 78 (696)
T 2ykg_A 6 TNLYSPFKPRNYQLELALPAMK-------GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNK 78 (696)
T ss_dssp -CTTC--CCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHH
T ss_pred ccccCCCCccHHHHHHHHHHHc-------CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHH
Confidence 3344556999999999999874 47899999999999999999998766432 78999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----c-ccCCccEEEEcCccccchhh-
Q 003260 349 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----V-VYNNLGLLVVDEEQRFGVKQ- 421 (835)
Q Consensus 349 ~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l-~~~~l~llVIDEaHr~g~~~- 421 (835)
+.+.+.+.. .++++..++|+.+..... ..+..+ ++|+|+||+.|.+. + .+.++++|||||||++....
T Consensus 79 ~~~~~~~~~-~~~~v~~~~g~~~~~~~~---~~~~~~-~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~ 153 (696)
T 2ykg_A 79 SVFSKYFER-HGYRVTGISGATAENVPV---EQIVEN-NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHP 153 (696)
T ss_dssp HHHHHHTTT-TTCCEEEECSSSCSSSCH---HHHHHT-CSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCH
T ss_pred HHHHHHhcc-CCceEEEEeCCccccccH---HHhccC-CCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCccc
Confidence 999985543 478999999977543322 222233 89999999988653 2 46788999999999963221
Q ss_pred HH-----HHhh-----hcCCceEEEeecCCC-------hhhHHHHHhc--CCCcceecCCCC------------------
Q 003260 422 KE-----KIAS-----FKISVDVLTLSATPI-------PRTLYLALTG--FRDASLISTPPP------------------ 464 (835)
Q Consensus 422 ~e-----~l~~-----l~~~~~vL~lSATp~-------p~tl~~~~~g--~~d~s~I~~~p~------------------ 464 (835)
.. .+.. .....++|+|||||. .......... ..+...+.....
T Consensus 154 ~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~ 233 (696)
T 2ykg_A 154 YNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRK 233 (696)
T ss_dssp HHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEE
T ss_pred HHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEe
Confidence 11 1111 135689999999996 2211111100 001111100000
Q ss_pred --Ccc---------------------------------------------------------------------------
Q 003260 465 --ERL--------------------------------------------------------------------------- 467 (835)
Q Consensus 465 --~r~--------------------------------------------------------------------------- 467 (835)
.+.
T Consensus 234 ~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 313 (696)
T 2ykg_A 234 VESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYT 313 (696)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHH
T ss_pred cCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHH
Confidence 000
Q ss_pred --------------------------------------ceeEEec-------------------cc-CHHHHHHHHHHHH
Q 003260 468 --------------------------------------PIKTHLS-------------------AF-SKEKVISAIKYEL 489 (835)
Q Consensus 468 --------------------------------------~v~~~~~-------------------~~-~~~~l~~~i~~~l 489 (835)
.+...+. .. ....+.+.+....
T Consensus 314 ~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~ 393 (696)
T 2ykg_A 314 SHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEY 393 (696)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Confidence 0000000 00 0011122222222
Q ss_pred --hcCCeEEEEecCccChHHHHHHHHhhC--CCCeEEEE--------eCCCCHHHHHHHHHHhhc-CCeeEEEEcCcCCc
Q 003260 490 --DRGGQVFYVLPRIKGLEEPMDFLQQAF--PGVDIAIA--------HGQQYSRQLEETMEKFAQ-GAIKILICTNIVES 556 (835)
Q Consensus 490 --~~ggqvlVf~n~v~~~e~l~~~L~~~~--p~~~v~~l--------hg~m~~~ere~vl~~F~~-g~~~ILVaT~iie~ 556 (835)
..++++||||+++..++.+++.|.... +++++..+ ||+|++.+|++++++|++ |+++|||||+++++
T Consensus 394 ~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~ 473 (696)
T 2ykg_A 394 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADE 473 (696)
T ss_dssp TTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCC
T ss_pred ccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhc
Confidence 246799999999999999999999861 22677777 569999999999999998 99999999999999
Q ss_pred CCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 557 GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|||+|++++||++|.|. +..+|+||+|| ||. +.|.|+++++..+
T Consensus 474 GiDip~v~~VI~~d~p~-s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~ 517 (696)
T 2ykg_A 474 GIDIAQCNLVILYEYVG-NVIKMIQTRGR-GRA-RGSKCFLLTSNAG 517 (696)
T ss_dssp C---CCCSEEEEESCC---CCCC-----------CCCEEEEEESCHH
T ss_pred CCcCccCCEEEEeCCCC-CHHHHHHhhcc-CcC-CCceEEEEecCCC
Confidence 99999999999999996 99999999999 998 7899999998764
No 35
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=7.3e-37 Score=367.09 Aligned_cols=309 Identities=21% Similarity=0.205 Sum_probs=211.4
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCC------CEEEEEcccHHHHHHH-HHHH
Q 003260 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG------KQAMVLAPTIVLAKQH-FDVV 351 (835)
Q Consensus 279 ~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g------~qvlVLvPtr~LA~Q~-~~~~ 351 (835)
+++|+|+|.++++.+++ ++++|+++|||+|||++|+++++..+..+ .++||++|+++|+.|+ ++++
T Consensus 5 ~~~l~~~Q~~~i~~il~-------g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l 77 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALE-------GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEF 77 (699)
T ss_dssp --CCCHHHHHHHHHHHS-------SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTH
T ss_pred CCCccHHHHHHHHHHHh-------CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 47899999999999874 46899999999999999999998765432 7899999999999999 9999
Q ss_pred HHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc-----------ccCCccEEEEcCccccchh
Q 003260 352 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-----------VYNNLGLLVVDEEQRFGVK 420 (835)
Q Consensus 352 ~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l-----------~~~~l~llVIDEaHr~g~~ 420 (835)
++.+.. ++++..++|+.+..++...+ . +.++|+|+||+.|.+.+ .+.++++|||||||++...
T Consensus 78 ~~~~~~--~~~v~~~~g~~~~~~~~~~~---~-~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~ 151 (699)
T 4gl2_A 78 QPFLKK--WYRVIGLSGDTQLKISFPEV---V-KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE 151 (699)
T ss_dssp HHHHTT--TSCEEEEC----CCCCHHHH---H-HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTT
T ss_pred HHHcCc--CceEEEEeCCcchhhHHHhh---h-cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCcc
Confidence 986644 37899999976554322222 2 45899999999887533 5678999999999986321
Q ss_pred h-----HHH-----Hhhhc---------CCceEEEeecCCChh-------hHH--HHHhcCCCcceecCCCCC-------
Q 003260 421 Q-----KEK-----IASFK---------ISVDVLTLSATPIPR-------TLY--LALTGFRDASLISTPPPE------- 465 (835)
Q Consensus 421 ~-----~e~-----l~~l~---------~~~~vL~lSATp~p~-------tl~--~~~~g~~d~s~I~~~p~~------- 465 (835)
. ... +.... +..++|+|||||... ... ..+....+...+......
T Consensus 152 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~ 231 (699)
T 4gl2_A 152 AVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQ 231 (699)
T ss_dssp BSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHH
T ss_pred chHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhh
Confidence 1 111 11112 667999999999762 111 111111111111111000
Q ss_pred -ccceeEEec-c--------------------------------------------------------------------
Q 003260 466 -RLPIKTHLS-A-------------------------------------------------------------------- 475 (835)
Q Consensus 466 -r~~v~~~~~-~-------------------------------------------------------------------- 475 (835)
..|...+.. .
T Consensus 232 ~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 311 (699)
T 4gl2_A 232 IQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEAL 311 (699)
T ss_dssp SCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 000000000 0
Q ss_pred ---------------------------------------------------------------------cCHHHHHHHHH
Q 003260 476 ---------------------------------------------------------------------FSKEKVISAIK 486 (835)
Q Consensus 476 ---------------------------------------------------------------------~~~~~l~~~i~ 486 (835)
.....+.+.+.
T Consensus 312 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~ 391 (699)
T 4gl2_A 312 QINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIM 391 (699)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 00001112222
Q ss_pred HHHhc---CCeEEEEecCccChHHHHHHHHhh----CCCCeEEEEeCC--------CCHHHHHHHHHHhhcCCeeEEEEc
Q 003260 487 YELDR---GGQVFYVLPRIKGLEEPMDFLQQA----FPGVDIAIAHGQ--------QYSRQLEETMEKFAQGAIKILICT 551 (835)
Q Consensus 487 ~~l~~---ggqvlVf~n~v~~~e~l~~~L~~~----~p~~~v~~lhg~--------m~~~ere~vl~~F~~g~~~ILVaT 551 (835)
..+.. ++++||||+++..++.+++.|... ..++++..+||+ |+..+|.+++++|++|+++|||||
T Consensus 392 ~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT 471 (699)
T 4gl2_A 392 EQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIAT 471 (699)
T ss_dssp HHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEE
T ss_pred HHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEc
Confidence 22222 789999999999999999999875 126789999999 999999999999999999999999
Q ss_pred CcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 552 NIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 552 ~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+++++|||+|++++||++|.|. ++.+|+||+||+||.| +.++++++.+.
T Consensus 472 ~~~~~GIDip~v~~VI~~d~p~-s~~~~~Qr~GRArr~g--~~~~l~~~~~~ 520 (699)
T 4gl2_A 472 TVAEEGLDIKECNIVIRYGLVT-NEIAMVQARGRARADE--STYVLVAHSGS 520 (699)
T ss_dssp CSCCTTSCCCSCCCCEEESCCC-CHHHHHHHHTTSCSSS--CEEEEEEESSS
T ss_pred cccccCCccccCCEEEEeCCCC-CHHHHHHHcCCCCCCC--ceEEEEEeCCc
Confidence 9999999999999999999995 9999999999987765 45555555443
No 36
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.1e-36 Score=349.30 Aligned_cols=300 Identities=21% Similarity=0.193 Sum_probs=217.4
Q ss_pred CCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003260 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 278 f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~ 357 (835)
++++|+|+|.+|++.+++ ++++++++|||+|||++|+.++... +.+++|++|+++|+.||+++|.+ |
T Consensus 90 ~~~~l~~~Q~~ai~~i~~-------~~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~-~-- 156 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLV-------DKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-F-- 156 (472)
T ss_dssp CCCCBCHHHHHHHHHHTT-------TTEEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGG-G--
T ss_pred CCCCcCHHHHHHHHHHHh-------cCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHh-C--
Confidence 567999999999998864 2579999999999999999988765 78999999999999999999987 5
Q ss_pred CCCcE-EEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccc-c-CCccEEEEcCccccchhhHHHHhhhcCCceE
Q 003260 358 YPDIK-VGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV-Y-NNLGLLVVDEEQRFGVKQKEKIASFKISVDV 434 (835)
Q Consensus 358 ~~gi~-V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~-~-~~l~llVIDEaHr~g~~~~e~l~~l~~~~~v 434 (835)
+++ ++.++|+... ..+|+|+|++.+...+. + .++++|||||||++.......+.......++
T Consensus 157 --~~~~v~~~~g~~~~-------------~~~Ivv~T~~~l~~~~~~~~~~~~liIvDEaH~~~~~~~~~~~~~~~~~~~ 221 (472)
T 2fwr_A 157 --GEEYVGEFSGRIKE-------------LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFR 221 (472)
T ss_dssp --CGGGEEEBSSSCBC-------------CCSEEEEEHHHHHHTHHHHTTTCSEEEEETGGGTTSTTTHHHHHTCCCSEE
T ss_pred --CCcceEEECCCcCC-------------cCCEEEEEcHHHHHHHHHhcCCCCEEEEECCcCCCChHHHHHHHhcCCCeE
Confidence 577 9999886532 37899999998876542 2 5699999999999876555556666677899
Q ss_pred EEeecCCChhh------------------HHHHHhc-CCCccee--cCC--CCC------------------------cc
Q 003260 435 LTLSATPIPRT------------------LYLALTG-FRDASLI--STP--PPE------------------------RL 467 (835)
Q Consensus 435 L~lSATp~p~t------------------l~~~~~g-~~d~s~I--~~~--p~~------------------------r~ 467 (835)
|+|||||.... ....... +.+.... ... +.. ..
T Consensus 222 l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (472)
T 2fwr_A 222 LGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAE 301 (472)
T ss_dssp EEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCS
T ss_pred EEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchh
Confidence 99999996211 1111111 1111110 000 000 00
Q ss_pred ceeEEecc---------------------cCHHHHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEE
Q 003260 468 PIKTHLSA---------------------FSKEKVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA 524 (835)
Q Consensus 468 ~v~~~~~~---------------------~~~~~l~~~i~~~l--~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~l 524 (835)
.+...+.. .........+.+.+ ..+++++|||++++.++.+++.|. +..+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-------~~~~ 374 (472)
T 2fwr_A 302 DFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-------IPAI 374 (472)
T ss_dssp SSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-------CCBC
T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-------ccee
Confidence 00000000 00001122333323 347899999999999888887773 4578
Q ss_pred eCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCC---ceEEEEEecC
Q 003260 525 HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK---EAHAYLFYPD 601 (835)
Q Consensus 525 hg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~---~G~ay~l~~~ 601 (835)
||+++..+|+++++.|++|+++|||||+++++|+|+|++++||+++.+ +++.+|.||+||+||.|+ .+.+|.+++.
T Consensus 375 ~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~-~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 375 THRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGS-GSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCS-SCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCC-CCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 999999999999999999999999999999999999999999999999 499999999999999983 4677888888
Q ss_pred CCcCCHHHHHHH
Q 003260 602 KSLLSDQALERL 613 (835)
Q Consensus 602 ~~~~~~~a~~rl 613 (835)
+......+..|.
T Consensus 454 ~t~ee~~~~~r~ 465 (472)
T 2fwr_A 454 GTGEVNTARRRK 465 (472)
T ss_dssp SCC---------
T ss_pred CCchHHHHHHHH
Confidence 877665555553
No 37
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=5.6e-36 Score=371.57 Aligned_cols=306 Identities=24% Similarity=0.277 Sum_probs=230.2
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHH
Q 003260 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 273 ~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~ 352 (835)
.+...++|+|+|+|.+||+.+++ ++++++++|||||||++|+.++......+.+++|++|+++|+.|++++++
T Consensus 31 ~~~~~~~f~l~~~Q~~aI~~il~-------g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~ 103 (997)
T 4a4z_A 31 NPARSWPFELDTFQKEAVYHLEQ-------GDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFK 103 (997)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHT-------TCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHH
T ss_pred hHHHhCCCCCCHHHHHHHHHHHc-------CCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 34567899999999999999874 47899999999999999999999888889999999999999999999999
Q ss_pred HhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----cccCCccEEEEcCcccc-----chhhH
Q 003260 353 ERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRF-----GVKQK 422 (835)
Q Consensus 353 ~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l~~~~l~llVIDEaHr~-----g~~~~ 422 (835)
+.|. +++++.++|+.+. +++++|+|+||+.|.+. ..+.++++|||||||++ +....
T Consensus 104 ~~~~---~~~v~~l~G~~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e 169 (997)
T 4a4z_A 104 ETFD---DVNIGLITGDVQI-----------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWE 169 (997)
T ss_dssp TTC-----CCEEEECSSCEE-----------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHH
T ss_pred HHcC---CCeEEEEeCCCcc-----------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHH
Confidence 8653 5789999997542 25689999999988642 35678999999999986 33344
Q ss_pred HHHhhhcCCceEEEeecCCChhh-HHHHHhc--CCCcceecCCCCCccceeEEecc------------------------
Q 003260 423 EKIASFKISVDVLTLSATPIPRT-LYLALTG--FRDASLISTPPPERLPIKTHLSA------------------------ 475 (835)
Q Consensus 423 e~l~~l~~~~~vL~lSATp~p~t-l~~~~~g--~~d~s~I~~~p~~r~~v~~~~~~------------------------ 475 (835)
+.+..++.++++|+||||++... +...+.. ..+..++.. +....|+..++..
T Consensus 170 ~ii~~l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~-~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (997)
T 4a4z_A 170 EVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVIST-PKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKE 248 (997)
T ss_dssp HHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEEC-SSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHH
T ss_pred HHHHhcccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEec-CCCCccceEEEecCCcchhcccchhhhhHHHHHHHHH
Confidence 55667778899999999985432 2211111 122222222 1222222221100
Q ss_pred ---------------------------------------------------------------------cCHHHHHHHHH
Q 003260 476 ---------------------------------------------------------------------FSKEKVISAIK 486 (835)
Q Consensus 476 ---------------------------------------------------------------------~~~~~l~~~i~ 486 (835)
.........+.
T Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 328 (997)
T 4a4z_A 249 ILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIV 328 (997)
T ss_dssp HHC-----------------------------------------------------------------CCCCTTHHHHHH
T ss_pred HhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHH
Confidence 00011233344
Q ss_pred HHHhc--CCeEEEEecCccChHHHHHHHHhhCC-------------------------------------CCeEEEEeCC
Q 003260 487 YELDR--GGQVFYVLPRIKGLEEPMDFLQQAFP-------------------------------------GVDIAIAHGQ 527 (835)
Q Consensus 487 ~~l~~--ggqvlVf~n~v~~~e~l~~~L~~~~p-------------------------------------~~~v~~lhg~ 527 (835)
..+.. .++++|||++++.|+.++..|....- ..++.++||+
T Consensus 329 ~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~g 408 (997)
T 4a4z_A 329 NYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGG 408 (997)
T ss_dssp HHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTT
T ss_pred HHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCC
Confidence 44433 36899999999999999988865310 1268999999
Q ss_pred CCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecCCCC--------ChhHHHHHhcccCCCC--CceEEEE
Q 003260 528 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF--------GLAQLYQLRGRVGRAD--KEAHAYL 597 (835)
Q Consensus 528 m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~~--------sl~~l~Qr~GRaGR~g--~~G~ay~ 597 (835)
|++.+|+.+++.|.+|.++|||||+++++|||+|+ .+||+.+.+.| +..+|+||+|||||.| ..|.||+
T Consensus 409 l~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~ 487 (997)
T 4a4z_A 409 LLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIV 487 (997)
T ss_dssp SCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEE
Confidence 99999999999999999999999999999999998 66676665543 7899999999999988 6799999
Q ss_pred EecC
Q 003260 598 FYPD 601 (835)
Q Consensus 598 l~~~ 601 (835)
++..
T Consensus 488 l~~~ 491 (997)
T 4a4z_A 488 MAYN 491 (997)
T ss_dssp ECCS
T ss_pred ecCC
Confidence 9853
No 38
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=3.9e-36 Score=366.86 Aligned_cols=310 Identities=16% Similarity=0.182 Sum_probs=184.8
Q ss_pred CCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-----CCEEEEEcccHHHHHHHHHHHH
Q 003260 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-----GKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 278 f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-----g~qvlVLvPtr~LA~Q~~~~~~ 352 (835)
+++.|+|+|.+|++.++. ++++|+++|||+|||++|+.+++..+.. +++++|++||++|+.|+++.++
T Consensus 245 g~~~l~~~Q~~~i~~~l~-------~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~ 317 (797)
T 4a2q_A 245 ETKKARSYQIELAQPAIN-------GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFK 317 (797)
T ss_dssp ---CCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh-------CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 456999999999999864 4689999999999999999999988765 7899999999999999999999
Q ss_pred HhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----c-ccCCccEEEEcCccccchhh-H-HH
Q 003260 353 ERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----V-VYNNLGLLVVDEEQRFGVKQ-K-EK 424 (835)
Q Consensus 353 ~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l-~~~~l~llVIDEaHr~g~~~-~-e~ 424 (835)
+.+... ++++..++|+.+...+. ..+.. .++|+|+||+.|.+. + .+.++++|||||||+++... . ..
T Consensus 318 ~~~~~~-~~~v~~~~g~~~~~~~~---~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i 392 (797)
T 4a2q_A 318 HHFERQ-GYSVQGISGENFSNVSV---EKVIE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVL 392 (797)
T ss_dssp HHHGGG-TCCEEEECCC-----CH---HHHHH-TCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHH
T ss_pred HhcccC-CceEEEEeCCcchhhhH---HHhhC-CCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHH
Confidence 876554 68999999987554322 22333 489999999988643 2 46788999999999975431 1 11
Q ss_pred Hhhh--------cCCceEEEeecCCChh----------hHHHHHhcCCCcceecCCCCC--------ccceeEE--ec--
Q 003260 425 IASF--------KISVDVLTLSATPIPR----------TLYLALTGFRDASLISTPPPE--------RLPIKTH--LS-- 474 (835)
Q Consensus 425 l~~l--------~~~~~vL~lSATp~p~----------tl~~~~~g~~d~s~I~~~p~~--------r~~v~~~--~~-- 474 (835)
+..+ .+..++|+|||||... .+... ....+...+...... ..+.... +.
T Consensus 393 ~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l-~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~ 471 (797)
T 4a2q_A 393 MTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSL-CSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR 471 (797)
T ss_dssp HHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHH-HHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCC
T ss_pred HHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHH-HHhcCCcEEecccccHHHHHHhcCCCceEEEecCCC
Confidence 1111 4558899999999531 11110 001111111110000 0000000 00
Q ss_pred --------------------------------------c-------------------c---------------------
Q 003260 475 --------------------------------------A-------------------F--------------------- 476 (835)
Q Consensus 475 --------------------------------------~-------------------~--------------------- 476 (835)
. .
T Consensus 472 ~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 551 (797)
T 4a2q_A 472 IHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRK 551 (797)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 0 0
Q ss_pred ------------------------------------------------------------C--HHHHHHHHHHHH--hcC
Q 003260 477 ------------------------------------------------------------S--KEKVISAIKYEL--DRG 492 (835)
Q Consensus 477 ------------------------------------------------------------~--~~~l~~~i~~~l--~~g 492 (835)
+ ...+.+.+...+ ..+
T Consensus 552 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~ 631 (797)
T 4a2q_A 552 YNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQ 631 (797)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCC
Confidence 0 001111222212 345
Q ss_pred CeEEEEecCccChHHHHHHHHhh----------CCCCeEEEEeCCCCHHHHHHHHHHhhc-CCeeEEEEcCcCCcCCCCC
Q 003260 493 GQVFYVLPRIKGLEEPMDFLQQA----------FPGVDIAIAHGQQYSRQLEETMEKFAQ-GAIKILICTNIVESGLDIQ 561 (835)
Q Consensus 493 gqvlVf~n~v~~~e~l~~~L~~~----------~p~~~v~~lhg~m~~~ere~vl~~F~~-g~~~ILVaT~iie~GIDIp 561 (835)
+++||||+++..++.+++.|... +.|.....+||+|+..+|..++++|++ |+++|||||+++++|||+|
T Consensus 632 ~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp 711 (797)
T 4a2q_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 711 (797)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------C
T ss_pred CeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCch
Confidence 89999999999999999999873 124456677899999999999999999 9999999999999999999
Q ss_pred CccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 562 ~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+|++||++|.|. ++.+|+||+|| ||. +.|.||+|+++.+
T Consensus 712 ~v~~VI~yd~p~-s~~~~iQr~GR-GR~-~~g~~i~l~~~~~ 750 (797)
T 4a2q_A 712 QCNLVVLYEYSG-NVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (797)
T ss_dssp CCSEEEEESCCS-CHHHHHTC---------CCCEEEEECCHH
T ss_pred hCCEEEEeCCCC-CHHHHHHhcCC-CCC-CCceEEEEEeCCc
Confidence 999999999995 99999999999 999 8999999998764
No 39
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=4.4e-37 Score=350.94 Aligned_cols=290 Identities=17% Similarity=0.222 Sum_probs=198.1
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHH-cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l-~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~ 380 (835)
.++|+|++||||||||++|+++++..+ ..+.+++|++||++||.|+++.+.. +.+.+..+..
T Consensus 7 ~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~-------~~v~~~~~~~---------- 69 (440)
T 1yks_A 7 KGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHG-------LDVKFHTQAF---------- 69 (440)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT-------SCEEEESSCC----------
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhc-------CCeEEecccc----------
Confidence 368999999999999999998888754 4577999999999999999988763 2333322211
Q ss_pred hhhcCCcceeeccHHHhhc-------------ccccCCccEEEEcCccccchhh---HHHHhh--hcCCceEEEeecCCC
Q 003260 381 MIKHGHLNIIVGTHSLLGS-------------RVVYNNLGLLVVDEEQRFGVKQ---KEKIAS--FKISVDVLTLSATPI 442 (835)
Q Consensus 381 ~l~~G~~dIIVgT~~~L~~-------------~l~~~~l~llVIDEaHr~g~~~---~e~l~~--l~~~~~vL~lSATp~ 442 (835)
-.++||+.+.+ ...+.++++|||||+|++.... ...+.. ...+.++++|||||+
T Consensus 70 --------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~ 141 (440)
T 1yks_A 70 --------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPP 141 (440)
T ss_dssp --------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCT
T ss_pred --------eeccCCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhccCCceEEEEeCCCC
Confidence 03566544432 2347899999999999982211 111111 136799999999998
Q ss_pred hhhHHHHHhcCCCcceecCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEE
Q 003260 443 PRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIA 522 (835)
Q Consensus 443 p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~~~~~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~ 522 (835)
++...+.... ..+. .+...+.......+... ....+++++||||+++.++.+++.|+.. ++++.
T Consensus 142 ~~~~~~~~~~---~~~~--------~~~~~~~~~~~~~~~~~---l~~~~~~~lVF~~s~~~a~~l~~~L~~~--~~~v~ 205 (440)
T 1yks_A 142 GTSDEFPHSN---GEIE--------DVQTDIPSEPWNTGHDW---ILADKRPTAWFLPSIRAANVMAASLRKA--GKSVV 205 (440)
T ss_dssp TCCCSSCCCS---SCEE--------EEECCCCSSCCSSSCHH---HHHCCSCEEEECSCHHHHHHHHHHHHHT--TCCEE
T ss_pred chhhhhhhcC---CCee--------EeeeccChHHHHHHHHH---HHhcCCCEEEEeCCHHHHHHHHHHHHHc--CCCEE
Confidence 7754222110 0000 00000111111112222 2335889999999999999999999998 88999
Q ss_pred EEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEE-------------------ecCCCCChhHHHHHh
Q 003260 523 IAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV-------------------QDVQQFGLAQLYQLR 583 (835)
Q Consensus 523 ~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi-------------------~d~p~~sl~~l~Qr~ 583 (835)
.+||+ +|+.+++.|++|+++|||||+++++|||+| +++||+ ++.| ++.++|+||+
T Consensus 206 ~lhg~----~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p-~~~~~~~Qr~ 279 (440)
T 1yks_A 206 VLNRK----TFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLR-ISASSAAQRR 279 (440)
T ss_dssp ECCSS----SCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEE-CCHHHHHHHH
T ss_pred Eecch----hHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccc-cCHHHHHHhc
Confidence 99993 688999999999999999999999999999 999986 6777 4999999999
Q ss_pred cccCCC-CCceEEEEEec---CCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCc
Q 003260 584 GRVGRA-DKEAHAYLFYP---DKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDV 650 (835)
Q Consensus 584 GRaGR~-g~~G~ay~l~~---~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dl~irg~g~~lg~~q~g~~ 650 (835)
||+||. |+.|.||+|+. +++. .++..++. .+.++..++..++.+++++..|++..
T Consensus 280 GR~GR~g~~~g~~~~l~~~~~~~~~------~~l~~l~~------~~~~~~~~l~~~~~~~~~~~~~~~~~ 338 (440)
T 1yks_A 280 GRIGRNPNRDGDSYYYSEPTSENNA------HHVCWLEA------SMLLDNMEVRGGMVAPLYGVEGTKTP 338 (440)
T ss_dssp TTSSCCTTCCCEEEEECSCCCCCCT------TBHHHHHH------HHHHTTSCCGGGCCCCCSTTHHHHSS
T ss_pred cccCCCCCCCceEEEEeccCChhhh------hhhhhhhH------HhccccccccccccccccchhhccCC
Confidence 999997 68999999973 3332 22333332 24566677777788888877766543
No 40
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=6.2e-37 Score=365.52 Aligned_cols=321 Identities=20% Similarity=0.196 Sum_probs=216.5
Q ss_pred CCCHhHH-----HHHHHHHH-hhhcCCCCCcEEEEccCCCcccHHHHHHHHHH-HcCCCEEEEEcccHHHHHHHHHHHHH
Q 003260 281 EPTPDQK-----KAFLDVER-DLTERETPMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 281 ~ptp~Q~-----~AI~~il~-dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~-l~~g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
.|||+|. ++|+.++. ++ -..++|+|++||||||||++|+++++.. ...+.+++|++||++||.|+++.+..
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~--l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~ 292 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEM--LKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRG 292 (673)
T ss_dssp EEEEEECC-------CCCCCGGG--GSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT
T ss_pred ccCceeeccccccchHHHhhHHH--HhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhc
Confidence 7899999 89887761 11 1247899999999999999999888866 45678999999999999999988764
Q ss_pred hhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHh----hcccccCCccEEEEcCccccchh---hHHHHh
Q 003260 354 RFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL----GSRVVYNNLGLLVVDEEQRFGVK---QKEKIA 426 (835)
Q Consensus 354 ~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L----~~~l~~~~l~llVIDEaHr~g~~---~~e~l~ 426 (835)
+ ++. +..+.. ..+.....-+-+.+.+.+ .....+.++++|||||+|+++.. ....+.
T Consensus 293 -~----~i~--~~~~~l---------~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~ 356 (673)
T 2wv9_A 293 -L----PVR--YLTPAV---------QREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIA 356 (673)
T ss_dssp -S----CCE--ECCC------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHH
T ss_pred -C----Cee--eecccc---------cccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHH
Confidence 2 222 222210 001011111222222222 12346889999999999999442 333333
Q ss_pred hh--cCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecCccC
Q 003260 427 SF--KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504 (835)
Q Consensus 427 ~l--~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~~~~~~~~l~~~i~~~l~~ggqvlVf~n~v~~ 504 (835)
.. ..+.++|+|||||++....+ +..+.++...........+...+......+++++||||++++
T Consensus 357 ~~~~~~~~~vl~~SAT~~~~i~~~--------------~~~~~~i~~v~~~~~~~~~~~~l~~l~~~~~~~lVF~~s~~~ 422 (673)
T 2wv9_A 357 TRVEAGEAAAIFMTATPPGTSDPF--------------PDTNSPVHDVSSEIPDRAWSSGFEWITDYAGKTVWFVASVKM 422 (673)
T ss_dssp HHHHTTSCEEEEECSSCTTCCCSS--------------CCCSSCEEEEECCCCSSCCSSCCHHHHSCCSCEEEECSSHHH
T ss_pred HhccccCCcEEEEcCCCChhhhhh--------------cccCCceEEEeeecCHHHHHHHHHHHHhCCCCEEEEECCHHH
Confidence 33 26789999999997652211 111222222221111111111122233468999999999999
Q ss_pred hHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEE----------------
Q 003260 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV---------------- 568 (835)
Q Consensus 505 ~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi---------------- 568 (835)
++.+++.|+.. ++++..+||+ +|+++++.|++|+++|||||+++++|||+| +++||+
T Consensus 423 ~e~la~~L~~~--g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r 495 (673)
T 2wv9_A 423 SNEIAQCLQRA--GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGR 495 (673)
T ss_dssp HHHHHHHHHTT--TCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCE
T ss_pred HHHHHHHHHhC--CCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeeccccc
Confidence 99999999988 8899999994 789999999999999999999999999999 999998
Q ss_pred ----ecCCCCChhHHHHHhcccCCC-CCceEEEEEe---cCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCC
Q 003260 569 ----QDVQQFGLAQLYQLRGRVGRA-DKEAHAYLFY---PDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 640 (835)
Q Consensus 569 ----~d~p~~sl~~l~Qr~GRaGR~-g~~G~ay~l~---~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dl~irg~g~ 640 (835)
++.|. +.++|+||+||+||. |+.|.||+|+ ++.+.......+....+... .+..||.++..+.+.++.++
T Consensus 496 ~~ll~d~P~-s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~-~~~~g~~~a~~~~~q~~~~~ 573 (673)
T 2wv9_A 496 VILSVPSAI-TSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNI-HLPNGLVAQLYGPERDKTYT 573 (673)
T ss_dssp EEECCSEEC-CHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTS-CBTTTBCCCCCGGGGGGCCC
T ss_pred ceecccCCC-CHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhc-cCCchhhhhccchhhhcccc
Confidence 34564 789999999999999 7899999996 34443333333333233333 45678887776665555555
Q ss_pred cc
Q 003260 641 IF 642 (835)
Q Consensus 641 ~l 642 (835)
+.
T Consensus 574 ~~ 575 (673)
T 2wv9_A 574 MD 575 (673)
T ss_dssp CT
T ss_pred ch
Confidence 43
No 41
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=4.1e-34 Score=340.88 Aligned_cols=317 Identities=19% Similarity=0.209 Sum_probs=228.0
Q ss_pred hCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003260 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 277 ~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
..+|.|||+|..+++.+++ ++ |.++.||+|||++|.+|++.....|++|+||+||++||.|.++.+... .
T Consensus 79 ~lG~~pt~VQ~~~ip~ll~-------G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l-~ 148 (844)
T 1tf5_A 79 VTGMFPFKVQLMGGVALHD-------GN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKI-F 148 (844)
T ss_dssp HHSCCCCHHHHHHHHHHHT-------TS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHH-H
T ss_pred HcCCCCcHHHHHhhHHHhC-------CC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHH-H
Confidence 3455999999999998874 23 999999999999999999855567889999999999999999999874 4
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHh-----hcc-------cccCCccEEEEcCccccch-----
Q 003260 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSR-------VVYNNLGLLVVDEEQRFGV----- 419 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L-----~~~-------l~~~~l~llVIDEaHr~g~----- 419 (835)
.+.|++|+++.|+.+..++... .+ +||+||||+.| .+. +.++.+.++||||||++..
T Consensus 149 ~~lgl~v~~i~gg~~~~~r~~~-----~~-~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~t 222 (844)
T 1tf5_A 149 EFLGLTVGLNLNSMSKDEKREA-----YA-ADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEART 222 (844)
T ss_dssp HHTTCCEEECCTTSCHHHHHHH-----HH-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTC
T ss_pred hhcCCeEEEEeCCCCHHHHHHh-----cC-CCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhcccc
Confidence 4558999999999876554332 23 89999999988 333 3467899999999998631
Q ss_pred ---------------hh-HHHHhhhc---------CCceEE-----------------EeecCCCh--hhHHHH---Hhc
Q 003260 420 ---------------KQ-KEKIASFK---------ISVDVL-----------------TLSATPIP--RTLYLA---LTG 452 (835)
Q Consensus 420 ---------------~~-~e~l~~l~---------~~~~vL-----------------~lSATp~p--~tl~~~---~~g 452 (835)
.. ...+..+. ...+++ ++|||.+. .....+ ...
T Consensus 223 plIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l 302 (844)
T 1tf5_A 223 PLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVA 302 (844)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHT
T ss_pred chhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHH
Confidence 11 12233333 245665 78888532 111111 100
Q ss_pred C-CCc---------------------------------------------------------------------------
Q 003260 453 F-RDA--------------------------------------------------------------------------- 456 (835)
Q Consensus 453 ~-~d~--------------------------------------------------------------------------- 456 (835)
+ ++.
T Consensus 303 ~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~ 382 (844)
T 1tf5_A 303 MQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEE 382 (844)
T ss_dssp CCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHH
T ss_pred hhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHH
Confidence 0 000
Q ss_pred --------ceecCCCCCccce----eEEecccCHHHHHHHHHHH----HhcCCeEEEEecCccChHHHHHHHHhhCCCCe
Q 003260 457 --------SLISTPPPERLPI----KTHLSAFSKEKVISAIKYE----LDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 520 (835)
Q Consensus 457 --------s~I~~~p~~r~~v----~~~~~~~~~~~l~~~i~~~----l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~ 520 (835)
.++.+| .++... ...+. ........++... ...+.++||||++++.++.++..|... ++.
T Consensus 383 e~~~iY~l~vv~IP-tn~p~~r~d~~d~v~-~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~--gi~ 458 (844)
T 1tf5_A 383 EFRNIYNMQVVTIP-TNRPVVRDDRPDLIY-RTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNK--GIP 458 (844)
T ss_dssp HHHHHHCCCEEECC-CSSCCCCEECCCEEE-SSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTT--TCC
T ss_pred HHHHHhCCceEEec-CCCCcccccCCcEEE-eCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC--CCC
Confidence 001111 111000 00111 1233333444433 345778999999999999999999998 899
Q ss_pred EEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCC--------CccEEEEecCCCCChhHHHHHhcccCCCCCc
Q 003260 521 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ--------NANTIIVQDVQQFGLAQLYQLRGRVGRADKE 592 (835)
Q Consensus 521 v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp--------~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~ 592 (835)
+.++||++.+.+++.+..+|+.| .|+|||++++||+||+ ++.+||+++.|. +...|.||+||+||.|.+
T Consensus 459 ~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~-s~r~y~hr~GRTGRqG~~ 535 (844)
T 1tf5_A 459 HQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHE-SRRIDNQLRGRSGRQGDP 535 (844)
T ss_dssp CEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCS-SHHHHHHHHTTSSGGGCC
T ss_pred EEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCC-CHHHHHhhcCccccCCCC
Confidence 99999999888887777667665 6999999999999999 788999999997 999999999999999999
Q ss_pred eEEEEEecCCCcCC-HHHHHHHHHH
Q 003260 593 AHAYLFYPDKSLLS-DQALERLAAL 616 (835)
Q Consensus 593 G~ay~l~~~~~~~~-~~a~~rl~~i 616 (835)
|.+++|++.++.+- ....++...+
T Consensus 536 G~s~~~vs~eD~l~r~f~~~~~~~~ 560 (844)
T 1tf5_A 536 GITQFYLSMEDELMRRFGAERTMAM 560 (844)
T ss_dssp EEEEEEEETTSSGGGSSHHHHHHHH
T ss_pred CeEEEEecHHHHHHHHHhHHHHHHH
Confidence 99999998765422 2234444443
No 42
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=9.6e-36 Score=372.07 Aligned_cols=277 Identities=17% Similarity=0.157 Sum_probs=199.0
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHH-HHHcCCCEEEEEcccHHHHHHHHHH
Q 003260 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF-CVVSAGKQAMVLAPTIVLAKQHFDV 350 (835)
Q Consensus 272 ~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l-~~l~~g~qvlVLvPtr~LA~Q~~~~ 350 (835)
+.|.+.++|.| |+|.+||+.+++ ++|++++||||||||+ |.++++ .....+.+++|++||++||.|+++.
T Consensus 48 ~~~~~~~g~~p-~iQ~~ai~~il~-------g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~ 118 (1054)
T 1gku_B 48 EFFRKCVGEPR-AIQKMWAKRILR-------KESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAET 118 (1054)
T ss_dssp HHHHTTTCSCC-HHHHHHHHHHHT-------TCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHH
T ss_pred HHHHHhcCCCH-HHHHHHHHHHHh-------CCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHH
Confidence 45566677888 999999999975 4799999999999998 555554 4456688999999999999999999
Q ss_pred HHHhhcCCCCc----EEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccc-cCCccEEEEcCccccch---hhH
Q 003260 351 VSERFSKYPDI----KVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV-YNNLGLLVVDEEQRFGV---KQK 422 (835)
Q Consensus 351 ~~~~f~~~~gi----~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~-~~~l~llVIDEaHr~g~---~~~ 422 (835)
++..+... ++ +++.++|+.+..++...+..+.+ ++|+|+||+.|.+.+. +.++++|||||||++.. ...
T Consensus 119 l~~l~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l~~lViDEah~~l~~~~~~~ 195 (1054)
T 1gku_B 119 IRKYAEKA-GVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVD 195 (1054)
T ss_dssp HHHHHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCCSEEEESCHHHHHTSTHHHH
T ss_pred HHHHHhhc-CCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccCCEEEEeChhhhhhccccHH
Confidence 99865544 67 89999999888777667777665 8999999999987554 67899999999999643 112
Q ss_pred HHHhhh-----------cCCceEEEeecCCChhhHHHHHhcCCCcceecCCCC--CccceeEEecccCHHHHHHHHHHHH
Q 003260 423 EKIASF-----------KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP--ERLPIKTHLSAFSKEKVISAIKYEL 489 (835)
Q Consensus 423 e~l~~l-----------~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~--~r~~v~~~~~~~~~~~l~~~i~~~l 489 (835)
..+..+ ....+++++|||+.+. .......+.++..+...+. ....+...+...... ..+...+
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~k~---~~L~~ll 271 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDESI---STLSSIL 271 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEESCCCT---TTTHHHH
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEechhHH---HHHHHHH
Confidence 222222 3467889999998665 2111111111111211111 111233332222211 1122222
Q ss_pred hc-CCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEE----cCcCCcCCCCCCc-
Q 003260 490 DR-GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILIC----TNIVESGLDIQNA- 563 (835)
Q Consensus 490 ~~-ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVa----T~iie~GIDIp~v- 563 (835)
.. +++++|||++++.++.+++.|... +.+..+||+| +.+++.|++|+.+|||| |+++++|||+|+|
T Consensus 272 ~~~~~~~LVF~~t~~~a~~l~~~L~~~---~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI 343 (1054)
T 1gku_B 272 EKLGTGGIIYARTGEEAEEIYESLKNK---FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERI 343 (1054)
T ss_dssp TTSCSCEEEEESSHHHHHHHHHTTTTS---SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTC
T ss_pred hhcCCCEEEEEcCHHHHHHHHHHHhhc---cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcc
Confidence 22 689999999999999999999876 7899999998 37889999999999999 9999999999995
Q ss_pred cEEEEecCC
Q 003260 564 NTIIVQDVQ 572 (835)
Q Consensus 564 ~~VIi~d~p 572 (835)
++||+++.|
T Consensus 344 ~~VI~~~~P 352 (1054)
T 1gku_B 344 RFAVFVGCP 352 (1054)
T ss_dssp CEEEEESCC
T ss_pred cEEEEeCCC
Confidence 999999999
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.3e-34 Score=370.43 Aligned_cols=308 Identities=20% Similarity=0.236 Sum_probs=223.9
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc--CCCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~--~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~ 358 (835)
.++|+|.+|++.++. .+.|++++||||||||++|.+|++..+. .+.+++|++|+++||.|.++.|.++|+..
T Consensus 926 ~fnpiQ~q~~~~l~~------~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~ 999 (1724)
T 4f92_B 926 FFNPIQTQVFNTVYN------SDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDR 999 (1724)
T ss_dssp BCCHHHHHHHHHHHS------CCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHhc------CCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchh
Confidence 699999999999974 2578999999999999999999998875 36789999999999999999999999876
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-------ccccCCccEEEEcCccccchhh---HH-HHh-
Q 003260 359 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-------RVVYNNLGLLVVDEEQRFGVKQ---KE-KIA- 426 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-------~l~~~~l~llVIDEaHr~g~~~---~e-~l~- 426 (835)
.|++|+.++|+.+...+ . + ++++|+|+||+.+.. ...+.++++||+||+|.++... .+ .+.
T Consensus 1000 ~g~~V~~ltGd~~~~~~--~---~--~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~r 1072 (1724)
T 4f92_B 1000 LNKKVVLLTGETSTDLK--L---L--GKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSR 1072 (1724)
T ss_dssp SCCCEEECCSCHHHHHH--H---H--HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHH
T ss_pred cCCEEEEEECCCCcchh--h---c--CCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHH
Confidence 68999999997543221 1 1 247999999997632 1235789999999999875421 11 111
Q ss_pred ------hhcCCceEEEeecCCC-hhhHHHHHhcCCCcceecCCCCCc-cceeEEecccC---H-H------HHHHHHHHH
Q 003260 427 ------SFKISVDVLTLSATPI-PRTLYLALTGFRDASLISTPPPER-LPIKTHLSAFS---K-E------KVISAIKYE 488 (835)
Q Consensus 427 ------~l~~~~~vL~lSATp~-p~tl~~~~~g~~d~s~I~~~p~~r-~~v~~~~~~~~---~-~------~l~~~i~~~ 488 (835)
....++++|+||||.. ++.+... .+..........+..| .+...++..+. . . .........
T Consensus 1073 l~~i~~~~~~~~riI~lSATl~N~~dla~W-L~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 1151 (1724)
T 4f92_B 1073 MRYISSQIERPIRIVALSSSLSNAKDVAHW-LGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITK 1151 (1724)
T ss_dssp HHHHHHTTSSCCEEEEEESCBTTHHHHHHH-HTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHhhcCCCceEEEEeCCCCCHHHHHHH-hCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHH
Confidence 2346799999999974 3333333 2333222222222222 23333332211 1 1 111222334
Q ss_pred HhcCCeEEEEecCccChHHHHHHHHhhC------------------------C--------CCeEEEEeCCCCHHHHHHH
Q 003260 489 LDRGGQVFYVLPRIKGLEEPMDFLQQAF------------------------P--------GVDIAIAHGQQYSRQLEET 536 (835)
Q Consensus 489 l~~ggqvlVf~n~v~~~e~l~~~L~~~~------------------------p--------~~~v~~lhg~m~~~ere~v 536 (835)
...+++++|||+++..|+.++..|.... . ...|+++||+|++.+|+.+
T Consensus 1152 ~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~V 1231 (1724)
T 4f92_B 1152 HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLV 1231 (1724)
T ss_dssp HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHH
T ss_pred hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHH
Confidence 4567899999999999888876664321 0 1369999999999999999
Q ss_pred HHHhhcCCeeEEEEcCcCCcCCCCCCccEEEE----ecCC-----CCChhHHHHHhcccCCCCC--ceEEEEEecCC
Q 003260 537 MEKFAQGAIKILICTNIVESGLDIQNANTIIV----QDVQ-----QFGLAQLYQLRGRVGRADK--EAHAYLFYPDK 602 (835)
Q Consensus 537 l~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi----~d~p-----~~sl~~l~Qr~GRaGR~g~--~G~ay~l~~~~ 602 (835)
++.|++|.++|||||+++++|||+|...+||. ++.. .++..+|.||+|||||.|. .|.|++++.+.
T Consensus 1232 E~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1232 EQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp HHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG
T ss_pred HHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecch
Confidence 99999999999999999999999996555552 2211 1478899999999999985 79999998765
No 44
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=8.8e-35 Score=360.02 Aligned_cols=310 Identities=16% Similarity=0.178 Sum_probs=184.0
Q ss_pred CCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-----CCEEEEEcccHHHHHHHHHHHH
Q 003260 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-----GKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 278 f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-----g~qvlVLvPtr~LA~Q~~~~~~ 352 (835)
.++.|+|+|.+|++.++. ++++++++|||+|||++|+.+++..+.. +.+++|++||++|+.|++++++
T Consensus 245 ~~~~~r~~Q~~ai~~il~-------g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~ 317 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAIN-------GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFK 317 (936)
T ss_dssp ---CCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHc-------CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 356999999999999864 4789999999999999999999887665 6789999999999999999999
Q ss_pred HhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----c-ccCCccEEEEcCccccchhh--HHH
Q 003260 353 ERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----V-VYNNLGLLVVDEEQRFGVKQ--KEK 424 (835)
Q Consensus 353 ~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----l-~~~~l~llVIDEaHr~g~~~--~e~ 424 (835)
..+... ++++..++|+.+...+. ..+.. .++|+|+||+.|.+. + .+.++++|||||||++.... ...
T Consensus 318 ~~~~~~-~~~v~~~~G~~~~~~~~---~~~~~-~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i 392 (936)
T 4a2w_A 318 HHFERQ-GYSVQGISGENFSNVSV---EKVIE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVL 392 (936)
T ss_dssp HHHHTT-TCCEEEECCC-----CC---HHHHH-HCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHH
T ss_pred HHhccc-CceEEEEECCcchhhHH---HHhcc-CCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHH
Confidence 866544 78999999986544321 22222 389999999988743 2 46778999999999975431 111
Q ss_pred Hhhh--------cCCceEEEeecCCChh----------hHHHHHhcCCCcceecCCCCC--------ccceeEEe--c--
Q 003260 425 IASF--------KISVDVLTLSATPIPR----------TLYLALTGFRDASLISTPPPE--------RLPIKTHL--S-- 474 (835)
Q Consensus 425 l~~l--------~~~~~vL~lSATp~p~----------tl~~~~~g~~d~s~I~~~p~~--------r~~v~~~~--~-- 474 (835)
+..+ .+..++++|||||... .+... ....+...+...... ..+..... .
T Consensus 393 ~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L-~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~ 471 (936)
T 4a2w_A 393 MTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSL-CSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR 471 (936)
T ss_dssp HHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHH-HHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCC
T ss_pred HHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHH-HHhcCCceeecccccHHHHHHhccCCcceEEecccc
Confidence 1111 3458899999999421 11000 000111111110000 00000000 0
Q ss_pred --------------------------------------c-------------------cC--------------------
Q 003260 475 --------------------------------------A-------------------FS-------------------- 477 (835)
Q Consensus 475 --------------------------------------~-------------------~~-------------------- 477 (835)
. ..
T Consensus 472 ~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 551 (936)
T 4a2w_A 472 IHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRK 551 (936)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 0 00
Q ss_pred -----------------------------------------------------------HHHHHHHHHHHH------hcC
Q 003260 478 -----------------------------------------------------------KEKVISAIKYEL------DRG 492 (835)
Q Consensus 478 -----------------------------------------------------------~~~l~~~i~~~l------~~g 492 (835)
.......+...+ ..+
T Consensus 552 ~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~ 631 (936)
T 4a2w_A 552 YNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQ 631 (936)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTT
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCC
Confidence 000011111122 235
Q ss_pred CeEEEEecCccChHHHHHHHHhh----------CCCCeEEEEeCCCCHHHHHHHHHHhhc-CCeeEEEEcCcCCcCCCCC
Q 003260 493 GQVFYVLPRIKGLEEPMDFLQQA----------FPGVDIAIAHGQQYSRQLEETMEKFAQ-GAIKILICTNIVESGLDIQ 561 (835)
Q Consensus 493 gqvlVf~n~v~~~e~l~~~L~~~----------~p~~~v~~lhg~m~~~ere~vl~~F~~-g~~~ILVaT~iie~GIDIp 561 (835)
+++||||+++..++.+++.|... +.|.....+||+|+..+|.+++++|++ |+++|||||+++++|||+|
T Consensus 632 ~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp 711 (936)
T 4a2w_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 711 (936)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CC
T ss_pred CeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcch
Confidence 89999999999999999999975 224456667899999999999999999 9999999999999999999
Q ss_pred CccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 562 ~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+|++||++|+|. ++.+|+||+|| ||. +.|.||+|++..+
T Consensus 712 ~v~~VI~yD~p~-s~~~~iQr~GR-GR~-~~g~vi~Li~~~t 750 (936)
T 4a2w_A 712 QCNLVVLYEYSG-NVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (936)
T ss_dssp CCSEEEEESCCS-CSHHHHCC---------CCCEEEEESCHH
T ss_pred hCCEEEEeCCCC-CHHHHHHhcCC-CCC-CCCEEEEEEeCCC
Confidence 999999999995 99999999999 999 7899999987754
No 45
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=7.1e-35 Score=333.69 Aligned_cols=279 Identities=19% Similarity=0.231 Sum_probs=201.7
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH-HHcCCCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003260 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC-VVSAGKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 279 ~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~-~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~ 357 (835)
..+++|+|+ +|+.++++ ...+++++|||||||++|+.+++. ....+.+++|++||++||.|+++.+.
T Consensus 2 ~~q~~~iq~-~i~~~l~~------~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~----- 69 (451)
T 2jlq_A 2 SAMGEPDYE-VDEDIFRK------KRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR----- 69 (451)
T ss_dssp CCCCSCCCC-CCGGGGST------TCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-----
T ss_pred CCCCCCcHH-HHHHHHhc------CCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc-----
Confidence 347889985 77776531 234599999999999998888775 44567899999999999999988774
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc----ccccCCccEEEEcCccccchhh---HHHHh--hh
Q 003260 358 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRFGVKQ---KEKIA--SF 428 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~----~l~~~~l~llVIDEaHr~g~~~---~e~l~--~l 428 (835)
|..+.+..+.... ...+...|.++|++.+.+ ...+.++++|||||||++.... ...+. ..
T Consensus 70 --g~~v~~~~~~~~~---------~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~ 138 (451)
T 2jlq_A 70 --GLPIRYQTPAVKS---------DHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE 138 (451)
T ss_dssp --TSCEEECCTTCSC---------CCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHHH
T ss_pred --Cceeeeeeccccc---------cCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHhhc
Confidence 3445444432211 112346788899887653 3457899999999999873321 12221 23
Q ss_pred cCCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecCccChHHH
Q 003260 429 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 508 (835)
Q Consensus 429 ~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~~~~~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l 508 (835)
.++.++++|||||++...... ..+..++... ...+...+. .+...+ ...+++++||||++++++.+
T Consensus 139 ~~~~~~i~~SAT~~~~~~~~~---~~~~~~~~~~--~~~p~~~~~------~~~~~l---~~~~~~~lVF~~s~~~a~~l 204 (451)
T 2jlq_A 139 MGEAAAIFMTATPPGSTDPFP---QSNSPIEDIE--REIPERSWN------TGFDWI---TDYQGKTVWFVPSIKAGNDI 204 (451)
T ss_dssp TTSCEEEEECSSCTTCCCSSC---CCSSCEEEEE--CCCCSSCCS------SSCHHH---HHCCSCEEEECSSHHHHHHH
T ss_pred CCCceEEEEccCCCccchhhh---cCCCceEecC--ccCCchhhH------HHHHHH---HhCCCCEEEEcCCHHHHHHH
Confidence 457999999999976543221 1222222211 001100000 011222 23478999999999999999
Q ss_pred HHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEec------------------
Q 003260 509 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD------------------ 570 (835)
Q Consensus 509 ~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d------------------ 570 (835)
++.|+.. ++.+..+||++. +.+++.|++|+.+|||||+++++|||+|+ ++||+++
T Consensus 205 ~~~L~~~--g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~ 277 (451)
T 2jlq_A 205 ANCLRKS--GKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILA 277 (451)
T ss_dssp HHHHHTT--TCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEE
T ss_pred HHHHHHc--CCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeec
Confidence 9999987 889999999863 57999999999999999999999999999 9999988
Q ss_pred --CCCCChhHHHHHhcccCCCCC-ceEEEEEecCC
Q 003260 571 --VQQFGLAQLYQLRGRVGRADK-EAHAYLFYPDK 602 (835)
Q Consensus 571 --~p~~sl~~l~Qr~GRaGR~g~-~G~ay~l~~~~ 602 (835)
.|. +.++|+||+||+||.|+ .|.||+|+...
T Consensus 278 ~~~p~-s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 278 GPIPV-TPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp EEEEC-CHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccC-CHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 664 89999999999999997 89999998644
No 46
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2e-33 Score=363.09 Aligned_cols=311 Identities=20% Similarity=0.213 Sum_probs=224.1
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc-----------CCCEEEEEcccHHHHHHHH
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-----------AGKQAMVLAPTIVLAKQHF 348 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~-----------~g~qvlVLvPtr~LA~Q~~ 348 (835)
..++|+|.++++.++. .+.|+|+|+|||||||++|.++++..+. ++.+++|++|+++||.|++
T Consensus 78 ~~ln~iQs~~~~~al~------~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~ 151 (1724)
T 4f92_B 78 KTLNRIQSKLYRAALE------TDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMV 151 (1724)
T ss_dssp SBCCHHHHHTHHHHHT------CCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc------CCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHH
Confidence 3799999999998874 2578999999999999999999998874 3578999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-------cccCCccEEEEcCccccchh-
Q 003260 349 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-------VVYNNLGLLVVDEEQRFGVK- 420 (835)
Q Consensus 349 ~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-------l~~~~l~llVIDEaHr~g~~- 420 (835)
+.|.++|+.+ |++|+.++|+.+...+. ...++|+|+||+.+... ..++++++|||||+|.++..
T Consensus 152 ~~l~~~~~~~-gi~V~~~tGd~~~~~~~-------~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~R 223 (1724)
T 4f92_B 152 GSFGKRLATY-GITVAELTGDHQLCKEE-------ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDR 223 (1724)
T ss_dssp HHHHHHHTTT-TCCEEECCSSCSSCCTT-------GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTT
T ss_pred HHHHHHHhhC-CCEEEEEECCCCCCccc-------cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCcc
Confidence 9999999887 89999999986543311 13589999999876321 13578999999999977542
Q ss_pred --hHHH--------HhhhcCCceEEEeecCCC-hhhHHHHHhcCCCcceecCCCC-CccceeEEec---ccCHHH----H
Q 003260 421 --QKEK--------IASFKISVDVLTLSATPI-PRTLYLALTGFRDASLISTPPP-ERLPIKTHLS---AFSKEK----V 481 (835)
Q Consensus 421 --~~e~--------l~~l~~~~~vL~lSATp~-p~tl~~~~~g~~d~s~I~~~p~-~r~~v~~~~~---~~~~~~----l 481 (835)
..+. +.....++++|+||||.+ +..+..++.............. ...|....+. ...... +
T Consensus 224 G~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~ 303 (1724)
T 4f92_B 224 GPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIM 303 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHH
Confidence 1121 123457899999999964 3333332221111111111111 1122332221 111111 1
Q ss_pred HHHHHHHH---hcCCeEEEEecCccChHHHHHHHHhhC-----------------------------------CCCeEEE
Q 003260 482 ISAIKYEL---DRGGQVFYVLPRIKGLEEPMDFLQQAF-----------------------------------PGVDIAI 523 (835)
Q Consensus 482 ~~~i~~~l---~~ggqvlVf~n~v~~~e~l~~~L~~~~-----------------------------------p~~~v~~ 523 (835)
.+.+...+ ..+++++|||++++.|+.+++.|.+.. -...|++
T Consensus 304 ~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~ 383 (1724)
T 4f92_B 304 NEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAI 383 (1724)
T ss_dssp HHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEE
T ss_pred HHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEE
Confidence 11222222 346799999999999999988876431 0135999
Q ss_pred EeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEE----ecCC-----CCChhHHHHHhcccCCCC--Cc
Q 003260 524 AHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV----QDVQ-----QFGLAQLYQLRGRVGRAD--KE 592 (835)
Q Consensus 524 lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi----~d~p-----~~sl~~l~Qr~GRaGR~g--~~ 592 (835)
+||+|++.+|..+++.|++|.++|||||++++.|||+|..++||. ++.. ..+..+|.||+|||||.| ..
T Consensus 384 HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~ 463 (1724)
T 4f92_B 384 HHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTK 463 (1724)
T ss_dssp ECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSC
T ss_pred EcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCc
Confidence 999999999999999999999999999999999999996666653 3332 137889999999999987 57
Q ss_pred eEEEEEecCCCc
Q 003260 593 AHAYLFYPDKSL 604 (835)
Q Consensus 593 G~ay~l~~~~~~ 604 (835)
|.+++++++++.
T Consensus 464 G~~ii~~~~~~~ 475 (1724)
T 4f92_B 464 GEGILITSHGEL 475 (1724)
T ss_dssp EEEEEEEESTTC
T ss_pred cEEEEEecchhH
Confidence 999999987654
No 47
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.7e-33 Score=332.24 Aligned_cols=291 Identities=15% Similarity=0.156 Sum_probs=188.9
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc---------CCCEEEEEcccHHHHHHHH-H
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---------AGKQAMVLAPTIVLAKQHF-D 349 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~---------~g~qvlVLvPtr~LA~Q~~-~ 349 (835)
+.|+|+|.+|++.+++.+.+ ...+++++++||||||++++.++...+. .+++++||+||++|+.|++ +
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~--~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQ--GKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHT--TCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------
T ss_pred CCchHHHHHHHHHHHHHHhc--CCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHH
Confidence 48999999999999987743 2356899999999999998877776654 4589999999999999998 6
Q ss_pred HHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc---------cccCCccEEEEcCccccchh
Q 003260 350 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR---------VVYNNLGLLVVDEEQRFGVK 420 (835)
Q Consensus 350 ~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~---------l~~~~l~llVIDEaHr~g~~ 420 (835)
.|.. | +..+..+.+.. ..+..+|+|+|++.|... +...++++|||||||++...
T Consensus 255 ~~~~-~----~~~~~~~~~~~------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~ 317 (590)
T 3h1t_A 255 TFTP-F----GDARHKIEGGK------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSAR 317 (590)
T ss_dssp CCTT-T----CSSEEECCC--------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----
T ss_pred HHHh-c----chhhhhhhccC------------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcccccc
Confidence 5553 3 33455554321 124589999999988653 23467899999999998653
Q ss_pred ---hHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceec----------CCCCCccceeEE---------------
Q 003260 421 ---QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS----------TPPPERLPIKTH--------------- 472 (835)
Q Consensus 421 ---~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~----------~~p~~r~~v~~~--------------- 472 (835)
....+....++.++|+|||||...........+....... ..|.....+...
T Consensus 318 ~~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (590)
T 3h1t_A 318 DNSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDR 397 (590)
T ss_dssp ----CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------
T ss_pred chHHHHHHHHhCCcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccc
Confidence 3344444445688999999997433211111111110000 001000000000
Q ss_pred ---------eccc----------CHHHHHHHHHHHH---hcCCeEEEEecCccChHHHHHHHHhhCCCC------eEEEE
Q 003260 473 ---------LSAF----------SKEKVISAIKYEL---DRGGQVFYVLPRIKGLEEPMDFLQQAFPGV------DIAIA 524 (835)
Q Consensus 473 ---------~~~~----------~~~~l~~~i~~~l---~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~------~v~~l 524 (835)
.... ....+.+.+...+ ..+++++|||+++.+++.+++.|.+..+.. .+..+
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i 477 (590)
T 3h1t_A 398 FGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARV 477 (590)
T ss_dssp -----------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEEC
T ss_pred cccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEE
Confidence 0000 0112222332222 446899999999999999999998875432 37889
Q ss_pred eCCCCHHHHHHHHHHhhcCCee---EEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCC
Q 003260 525 HGQQYSRQLEETMEKFAQGAIK---ILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK 591 (835)
Q Consensus 525 hg~m~~~ere~vl~~F~~g~~~---ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~ 591 (835)
||+++. +|+.++++|++|+.+ |||||+++++|||+|++++||+++.+. +...|+||+||+||.+.
T Consensus 478 ~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~-s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 478 TSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVN-SMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp SSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCC-CHHHHHHHHTTSCCCBG
T ss_pred eCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCC-ChHHHHHHHhhhcccCc
Confidence 999864 799999999998866 899999999999999999999999986 99999999999999874
No 48
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=7.2e-33 Score=329.37 Aligned_cols=306 Identities=20% Similarity=0.188 Sum_probs=212.3
Q ss_pred hCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003260 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 277 ~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
..+..|||+|..+++.+++ ++ |..++||+|||++|.+|++.....|++|+||+||++||.|+++.+...+
T Consensus 70 ~lg~~p~~VQ~~~i~~ll~-------G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~- 139 (853)
T 2fsf_A 70 VFGMRHFDVQLLGGMVLNE-------RC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLF- 139 (853)
T ss_dssp HHSCCCCHHHHHHHHHHHS-------SE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHH-
T ss_pred HcCCCCChHHHhhcccccC-------Ce--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHH-
Confidence 3457999999999998863 22 9999999999999999998666678999999999999999999998744
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhh-----cc-------cccCCccEEEEcCccccchh----
Q 003260 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-----SR-------VVYNNLGLLVVDEEQRFGVK---- 420 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~-----~~-------l~~~~l~llVIDEaHr~g~~---- 420 (835)
.+.|++|+++.|+.+...+.. ..+ ++|+||||+.|. +. +.++++.++||||||++...
T Consensus 140 ~~lgl~v~~i~GG~~~~~r~~-----~~~-~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~t 213 (853)
T 2fsf_A 140 EFLGLTVGINLPGMPAPAKRE-----AYA-ADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEART 213 (853)
T ss_dssp HHTTCCEEECCTTCCHHHHHH-----HHH-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTC
T ss_pred HhcCCeEEEEeCCCCHHHHHH-----hcC-CCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcc
Confidence 445899999999987654332 223 899999999872 22 44588999999999986411
Q ss_pred ----------------h-HHHHhhhcC--------------------CceEE------------------------Eeec
Q 003260 421 ----------------Q-KEKIASFKI--------------------SVDVL------------------------TLSA 439 (835)
Q Consensus 421 ----------------~-~e~l~~l~~--------------------~~~vL------------------------~lSA 439 (835)
. ...+..+.. ..+++ ++||
T Consensus 214 pLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsa 293 (853)
T 2fsf_A 214 PLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSP 293 (853)
T ss_dssp EEEEEEC-------------------------------------------------------------------------
T ss_pred cccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCc
Confidence 1 112222221 23332 7888
Q ss_pred CCChh--hHHHHH---h---------------------------------cCC---------------------------
Q 003260 440 TPIPR--TLYLAL---T---------------------------------GFR--------------------------- 454 (835)
Q Consensus 440 Tp~p~--tl~~~~---~---------------------------------g~~--------------------------- 454 (835)
|.++. .+..++ . |+.
T Consensus 294 t~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyf 373 (853)
T 2fsf_A 294 ANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYF 373 (853)
T ss_dssp ---------------------------------------------------------------CCCCCEEEEEEEHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHH
Confidence 85321 110000 0 000
Q ss_pred ------------------------CcceecCCCC---CccceeEEecccCHHHHHHHHHHHH----hcCCeEEEEecCcc
Q 003260 455 ------------------------DASLISTPPP---ERLPIKTHLSAFSKEKVISAIKYEL----DRGGQVFYVLPRIK 503 (835)
Q Consensus 455 ------------------------d~s~I~~~p~---~r~~v~~~~~~~~~~~l~~~i~~~l----~~ggqvlVf~n~v~ 503 (835)
+..++.+|+. .|......+ .........++...+ ..+.++||||++++
T Consensus 374 r~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v-~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie 452 (853)
T 2fsf_A 374 RLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLV-YMTEAEKIQAIIEDIKERTAKGQPVLVGTISIE 452 (853)
T ss_dssp TTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEE-ESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHH
T ss_pred hhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEE-EeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHH
Confidence 0011111110 000000011 123334444444433 45678999999999
Q ss_pred ChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCc--------------------
Q 003260 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA-------------------- 563 (835)
Q Consensus 504 ~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v-------------------- 563 (835)
.++.+++.|... ++.+.++||++.+.+++.+.++|+.| .|+|||++++||+||+..
T Consensus 453 ~se~Ls~~L~~~--gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~ 528 (853)
T 2fsf_A 453 KSELVSNELTKA--GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEK 528 (853)
T ss_dssp HHHHHHHHHHHT--TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHH
T ss_pred HHHHHHHHHHHC--CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHH
Confidence 999999999998 89999999999888888888999988 699999999999999963
Q ss_pred -----------------cEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003260 564 -----------------NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 564 -----------------~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
.+||+++.|. +...|.||+||+||.|.+|.+++|++.++.
T Consensus 529 ~~~~~~~~~~~V~~~GGl~VI~te~pe-s~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 529 IKADWQVRHDAVLEAGGLHIIGTERHE-SRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEESSCCS-SHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHHHhhhhhhHHHhcCCcEEEEccCCC-CHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999997 999999999999999999999999886653
No 49
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=4.8e-32 Score=322.63 Aligned_cols=307 Identities=17% Similarity=0.154 Sum_probs=226.3
Q ss_pred HhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhh
Q 003260 276 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 276 ~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f 355 (835)
...++.|||+|..+++.+++ + .|.+++||+|||++|.+|++.....|++|+|++||++||.|.++.+...+
T Consensus 106 R~lG~rP~~VQ~~~ip~Ll~-------G--~Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~ 176 (922)
T 1nkt_A 106 RVLDQRPFDVQVMGAAALHL-------G--NVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVH 176 (922)
T ss_dssp HHHSCCCCHHHHHHHHHHHT-------T--EEEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHhHhc-------C--CEEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 45677999999999998864 2 29999999999999999997655668899999999999999999998744
Q ss_pred cCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHh-----hc-------ccccCCccEEEEcCccccch----
Q 003260 356 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GS-------RVVYNNLGLLVVDEEQRFGV---- 419 (835)
Q Consensus 356 ~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L-----~~-------~l~~~~l~llVIDEaHr~g~---- 419 (835)
.+.|++|+++.|+.+..++.... + +||+||||+.| .+ .+.++.+.++||||||++..
T Consensus 177 -~~lGLsv~~i~gg~~~~~r~~~y-----~-~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDear 249 (922)
T 1nkt_A 177 -RFLGLQVGVILATMTPDERRVAY-----N-ADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEAR 249 (922)
T ss_dssp -HHTTCCEEECCTTCCHHHHHHHH-----H-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGG
T ss_pred -hhcCCeEEEEeCCCCHHHHHHhc-----C-CCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCc
Confidence 45589999999998765543332 3 89999999987 22 24567899999999998641
Q ss_pred ----------------h-hHHHHhhhc---------CCceEE-----------------EeecCCCh--hhHHHHH---h
Q 003260 420 ----------------K-QKEKIASFK---------ISVDVL-----------------TLSATPIP--RTLYLAL---T 451 (835)
Q Consensus 420 ----------------~-~~e~l~~l~---------~~~~vL-----------------~lSATp~p--~tl~~~~---~ 451 (835)
. ....+..+. ...+++ ++|||.++ ..+..++ .
T Consensus 250 tPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~ 329 (922)
T 1nkt_A 250 TPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKE 329 (922)
T ss_dssp SCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHH
T ss_pred cceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHH
Confidence 1 123344444 466777 88999643 1111111 0
Q ss_pred cC-CC-------cc------------------------------------------------------------------
Q 003260 452 GF-RD-------AS------------------------------------------------------------------ 457 (835)
Q Consensus 452 g~-~d-------~s------------------------------------------------------------------ 457 (835)
.+ ++ ..
T Consensus 330 l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~ 409 (922)
T 1nkt_A 330 LFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEA 409 (922)
T ss_dssp HCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGH
T ss_pred HhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHH
Confidence 00 00 00
Q ss_pred ----------eecCCCC---CccceeEEecccCHHHHHHHHHH----HHhcCCeEEEEecCccChHHHHHHHHhhCCCCe
Q 003260 458 ----------LISTPPP---ERLPIKTHLSAFSKEKVISAIKY----ELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVD 520 (835)
Q Consensus 458 ----------~I~~~p~---~r~~v~~~~~~~~~~~l~~~i~~----~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~ 520 (835)
++.+|+. .+......+. ........++.. ....+.++||||++++.++.+++.|... +++
T Consensus 410 ~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~-~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~--Gi~ 486 (922)
T 1nkt_A 410 AELHEIYKLGVVSIPTNMPMIREDQSDLIY-KTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKR--RIP 486 (922)
T ss_dssp HHHHHHHCCEEEECCCSSCCCCEECCCEEE-SCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHT--TCC
T ss_pred HHHHHHhCCCeEEeCCCCCcccccCCcEEE-eCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC--CCC
Confidence 1111110 0000000111 123333444433 3345678999999999999999999998 899
Q ss_pred EEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCc-------------------------------------
Q 003260 521 IAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA------------------------------------- 563 (835)
Q Consensus 521 v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v------------------------------------- 563 (835)
+.++||++.+.+++.+.+.|+.| .|+|||++++||+||+..
T Consensus 487 ~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (922)
T 1nkt_A 487 HNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVK 564 (922)
T ss_dssp CEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHH
T ss_pred EEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHH
Confidence 99999999888887888888877 699999999999999964
Q ss_pred ---------------cEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003260 564 ---------------NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 564 ---------------~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
.+||+++.|. +...|.||+||+||.|.+|.+.+|++.++.
T Consensus 565 ~~~~~~~~~V~~~GGlhVI~te~pe-s~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 565 EEASKEAKEVIEAGGLYVLGTERHE-SRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHTTHHHHHHHHTTSEEEEECSCCS-SHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHHhhhHHHhcCCcEEEeccCCC-CHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999997 999999999999999999999999986653
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=5.1e-33 Score=318.98 Aligned_cols=263 Identities=22% Similarity=0.209 Sum_probs=183.9
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHH-cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l-~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~ 380 (835)
.+.++++++|||||||++|+++++..+ ..+.+++|++||++||.|+++++. |..+....+.....
T Consensus 20 ~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~------- 85 (459)
T 2z83_A 20 KRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQRE------- 85 (459)
T ss_dssp TTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT-------TSCEEECC-------------
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc-------CceEeEEecccccC-------
Confidence 367999999999999999999888654 467899999999999999988875 34444433321110
Q ss_pred hhhcCCcceeeccHHHhh----cccccCCccEEEEcCccccchh---hHHHHhh--hcCCceEEEeecCCChhhHHHHHh
Q 003260 381 MIKHGHLNIIVGTHSLLG----SRVVYNNLGLLVVDEEQRFGVK---QKEKIAS--FKISVDVLTLSATPIPRTLYLALT 451 (835)
Q Consensus 381 ~l~~G~~dIIVgT~~~L~----~~l~~~~l~llVIDEaHr~g~~---~~e~l~~--l~~~~~vL~lSATp~p~tl~~~~~ 451 (835)
......+.+.|++.+. ....+.++++|||||||++... ....+.. ...+.++++||||+++....+..
T Consensus 86 --~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~~~~~~- 162 (459)
T 2z83_A 86 --HQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTTDPFPD- 162 (459)
T ss_dssp ----CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC-
T ss_pred --CCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCCcchhhhcc-
Confidence 1122345667766553 3445789999999999985321 1111211 23688999999999654211110
Q ss_pred cCCCcceecCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHH
Q 003260 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSR 531 (835)
Q Consensus 452 g~~d~s~I~~~p~~r~~v~~~~~~~~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ 531 (835)
...++.... ...+. .........+. ..+++++||||+++.++.+++.|+.. ++.+..+||+
T Consensus 163 --~~~pi~~~~--~~~~~------~~~~~~~~~l~---~~~~~~LVF~~s~~~~~~l~~~L~~~--g~~v~~lh~~---- 223 (459)
T 2z83_A 163 --SNAPIHDLQ--DEIPD------RAWSSGYEWIT---EYAGKTVWFVASVKMGNEIAMCLQRA--GKKVIQLNRK---- 223 (459)
T ss_dssp --CSSCEEEEE--CCCCS------SCCSSCCHHHH---HCCSCEEEECSCHHHHHHHHHHHHHT--TCCEEEESTT----
T ss_pred --CCCCeEEec--ccCCc------chhHHHHHHHH---hcCCCEEEEeCChHHHHHHHHHHHhc--CCcEEecCHH----
Confidence 011111100 00000 00001112222 24789999999999999999999998 8899999995
Q ss_pred HHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEE--------------------ecCCCCChhHHHHHhcccCCCCC
Q 003260 532 QLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV--------------------QDVQQFGLAQLYQLRGRVGRADK 591 (835)
Q Consensus 532 ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi--------------------~d~p~~sl~~l~Qr~GRaGR~g~ 591 (835)
+|+.+++.|++|+.+|||||+++++|||+|+ ++||+ ++.|. +.++|+||+||+||.|.
T Consensus 224 ~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~-s~~~~~QR~GRaGR~g~ 301 (459)
T 2z83_A 224 SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPI-TSASAAQRRGRVGRNPN 301 (459)
T ss_dssp CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEEC-CHHHHHHHHTTSSCCTT
T ss_pred HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCC-CHHHHHHhccccCCCCC
Confidence 6788999999999999999999999999999 99998 55775 89999999999999997
Q ss_pred -ceEEEEEecCC
Q 003260 592 -EAHAYLFYPDK 602 (835)
Q Consensus 592 -~G~ay~l~~~~ 602 (835)
.|.||+|+.+.
T Consensus 302 ~~G~~~~~~~~~ 313 (459)
T 2z83_A 302 QVGDEYHYGGAT 313 (459)
T ss_dssp CCCEEEEECSCC
T ss_pred CCCeEEEEEccc
Confidence 89999999875
No 51
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3.1e-33 Score=331.28 Aligned_cols=276 Identities=19% Similarity=0.211 Sum_probs=197.2
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHH-cCCCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l-~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~ 358 (835)
-.++|+|+.+++.++ .++|+++++|||||||++|+++++..+ ..+.+++|++||++||.|+++.+.
T Consensus 170 ~~~lpiq~~~i~~l~-------~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~------ 236 (618)
T 2whx_A 170 RIGEPDYEVDEDIFR-------KKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR------ 236 (618)
T ss_dssp CCCCCCCCCCGGGGS-------TTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT------
T ss_pred ccCCCccccCHHHHh-------cCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc------
Confidence 467888877655443 268999999999999999988887654 457799999999999999988775
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc----ccccCCccEEEEcCccccchh---hHHHHhhh--c
Q 003260 359 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRFGVK---QKEKIASF--K 429 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~----~l~~~~l~llVIDEaHr~g~~---~~e~l~~l--~ 429 (835)
+..+.+..+.. .........+.+.|++.+.. ...+.++++|||||||++... ....+... .
T Consensus 237 -~~~v~~~~~~l---------~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~ 306 (618)
T 2whx_A 237 -GLPIRYQTPAV---------KSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEM 306 (618)
T ss_dssp -TSCEEECCTTS---------SCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHH
T ss_pred -CCceeEecccc---------eeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhcc
Confidence 23444322211 01112223455667665542 334789999999999998432 22233222 2
Q ss_pred CCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecCccChHHHH
Q 003260 430 ISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509 (835)
Q Consensus 430 ~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~~~~~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~ 509 (835)
.+.++++||||+++....+.. .+...+.... ..+ ......+...+ ...++++||||+++++++.++
T Consensus 307 ~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~--~~~------~~~~~~ll~~l---~~~~~~~LVF~~s~~~a~~l~ 372 (618)
T 2whx_A 307 GEAAAIFMTATPPGSTDPFPQ---SNSPIEDIER--EIP------ERSWNTGFDWI---TDYQGKTVWFVPSIKAGNDIA 372 (618)
T ss_dssp TSCEEEEECSSCTTCCCSSCC---CSSCEEEEEC--CCC------SSCCSSSCHHH---HHCCSCEEEECSSHHHHHHHH
T ss_pred cCccEEEEECCCchhhhhhhc---cCCceeeecc--cCC------HHHHHHHHHHH---HhCCCCEEEEECChhHHHHHH
Confidence 678999999999665321111 1111111110 000 00001122222 235789999999999999999
Q ss_pred HHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEE--------------------EEe
Q 003260 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI--------------------IVQ 569 (835)
Q Consensus 510 ~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~V--------------------Ii~ 569 (835)
+.|... ++.+..+||+ +|+++++.|++|+.+|||||+++++|||+| +++| |++
T Consensus 373 ~~L~~~--g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~ 445 (618)
T 2whx_A 373 NCLRKS--GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAG 445 (618)
T ss_dssp HHHHHT--TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEE
T ss_pred HHHHHc--CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcc
Confidence 999998 8899999985 688899999999999999999999999998 9988 556
Q ss_pred cCCCCChhHHHHHhcccCCCC-CceEEEEEec
Q 003260 570 DVQQFGLAQLYQLRGRVGRAD-KEAHAYLFYP 600 (835)
Q Consensus 570 d~p~~sl~~l~Qr~GRaGR~g-~~G~ay~l~~ 600 (835)
+.|. +.++|+||+||+||.| +.|.||+|++
T Consensus 446 d~P~-s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 446 PIPV-TPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp EEEC-CHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred cccC-CHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 6675 8999999999999996 4899999997
No 52
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.98 E-value=8.6e-33 Score=326.50 Aligned_cols=256 Identities=16% Similarity=0.132 Sum_probs=188.7
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhh
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l 382 (835)
+++++++||||||||++|+.+++. .+.+++|++||++||.|+++++.+.++ ..++...++..
T Consensus 232 ~~~vlv~ApTGSGKT~a~~l~ll~---~g~~vLVl~PTReLA~Qia~~l~~~~g----~~vg~~vG~~~----------- 293 (666)
T 3o8b_A 232 FQVAHLHAPTGSGKSTKVPAAYAA---QGYKVLVLNPSVAATLGFGAYMSKAHG----IDPNIRTGVRT----------- 293 (666)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHHHS----CCCEEECSSCE-----------
T ss_pred CCeEEEEeCCchhHHHHHHHHHHH---CCCeEEEEcchHHHHHHHHHHHHHHhC----CCeeEEECcEe-----------
Confidence 578999999999999999888765 477999999999999999999887663 45666666532
Q ss_pred hcCCcceeeccHHHhhcc--cccCCccEEEEcCccccchhhHH---HH-hhhcCCce--EEEeecCCChhhHHHHHhcCC
Q 003260 383 KHGHLNIIVGTHSLLGSR--VVYNNLGLLVVDEEQRFGVKQKE---KI-ASFKISVD--VLTLSATPIPRTLYLALTGFR 454 (835)
Q Consensus 383 ~~G~~dIIVgT~~~L~~~--l~~~~l~llVIDEaHr~g~~~~e---~l-~~l~~~~~--vL~lSATp~p~tl~~~~~g~~ 454 (835)
..+.++|+|+||++|... +.++++++|||||+|.+...... .+ ..+....+ ++++|||+++... ..
T Consensus 294 ~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~------~~ 367 (666)
T 3o8b_A 294 ITTGAPVTYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VP 367 (666)
T ss_dssp ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC------CC
T ss_pred ccCCCCEEEECcHHHHhCCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcccc------cC
Confidence 235689999999988653 45678999999999988654332 22 22333333 7778999976310 11
Q ss_pred Ccce--ecCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHH
Q 003260 455 DASL--ISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQ 532 (835)
Q Consensus 455 d~s~--I~~~p~~r~~v~~~~~~~~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~e 532 (835)
.+.. +...... .+. ....... .....++++|||||+++.++.+++.|++. ++.+..+||+|++.+
T Consensus 368 ~p~i~~v~~~~~~--~i~-~~~~~~~--------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~--g~~v~~lHG~l~q~e 434 (666)
T 3o8b_A 368 HPNIEEVALSNTG--EIP-FYGKAIP--------IEAIRGGRHLIFCHSKKKCDELAAKLSGL--GINAVAYYRGLDVSV 434 (666)
T ss_dssp CTTEEEEECBSCS--SEE-ETTEEEC--------GGGSSSSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECTTSCGGG
T ss_pred CcceEEEeecccc--hhH-HHHhhhh--------hhhccCCcEEEEeCCHHHHHHHHHHHHhC--CCcEEEecCCCCHHH
Confidence 1111 0110000 010 0000000 01225789999999999999999999987 889999999999764
Q ss_pred HHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEE----------Eec-----------CCCCChhHHHHHhcccCCCCC
Q 003260 533 LEETMEKFAQGAIKILICTNIVESGLDIQNANTII----------VQD-----------VQQFGLAQLYQLRGRVGRADK 591 (835)
Q Consensus 533 re~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VI----------i~d-----------~p~~sl~~l~Qr~GRaGR~g~ 591 (835)
|.++..+|||||+++++|||+| +++|| ++| .|. +.++|+||+||+|| |+
T Consensus 435 -------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~-s~~syiQRiGRtGR-g~ 504 (666)
T 3o8b_A 435 -------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQ-DAVSRSQRRGRTGR-GR 504 (666)
T ss_dssp -------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEEC-BHHHHHHHHTTBCS-SS
T ss_pred -------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcC-CHHHHHHHhccCCC-CC
Confidence 5566679999999999999998 99999 455 665 88999999999999 89
Q ss_pred ceEEEEEecCCCcCC
Q 003260 592 EAHAYLFYPDKSLLS 606 (835)
Q Consensus 592 ~G~ay~l~~~~~~~~ 606 (835)
.|. |.|+++++...
T Consensus 505 ~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 505 RGI-YRFVTPGERPS 518 (666)
T ss_dssp CEE-EEESCCCCBCS
T ss_pred CCE-EEEEecchhhc
Confidence 999 99998876543
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=1.9e-31 Score=317.84 Aligned_cols=299 Identities=18% Similarity=0.193 Sum_probs=210.4
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhh-----cCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLT-----ERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLA 344 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~-----~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA 344 (835)
+.....+.||+..++.|.++|..+..... ..-.+++++++||||||||+.++..+.. .++.+|++||++||
T Consensus 117 f~~~~~~~fp~~e~~d~l~~i~dl~~p~~~~p~ar~l~rk~vlv~apTGSGKT~~al~~l~~----~~~gl~l~PtR~LA 192 (677)
T 3rc3_A 117 FLRHAKQIFPVLDCKDDLRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFS----AKSGVYCGPLKLLA 192 (677)
T ss_dssp HHHHHHHHCGGGGCHHHHHHHTBCCCGGGGCHHHHTSCCEEEEEECCTTSSHHHHHHHHHHH----SSSEEEEESSHHHH
T ss_pred HHHHHHhhCCCcCCHHHHHHHhhccChhhhCHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHh----cCCeEEEeCHHHHH
Confidence 55667788999889999999754422110 0123578999999999999966555443 35569999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcC-CcceeeccHHHhhcccccCCccEEEEcCccccch----
Q 003260 345 KQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG-HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV---- 419 (835)
Q Consensus 345 ~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G-~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~---- 419 (835)
.|+++++.+. |+.+.+++|+.... - ...| ..+++++|++.+. ....+++|||||+|+++.
T Consensus 193 ~Qi~~~l~~~-----g~~v~lltG~~~~i------v-~TpGr~~~il~~T~e~~~---l~~~v~lvVIDEaH~l~d~~~g 257 (677)
T 3rc3_A 193 HEIFEKSNAA-----GVPCDLVTGEERVT------V-QPNGKQASHVSCTVEMCS---VTTPYEVAVIDEIQMIRDPARG 257 (677)
T ss_dssp HHHHHHHHHT-----TCCEEEECSSCEEC------C-STTCCCCSEEEEEGGGCC---SSSCEEEEEECSGGGGGCTTTH
T ss_pred HHHHHHHHhc-----CCcEEEEECCeeEE------e-cCCCcccceeEecHhHhh---hcccCCEEEEecceecCCccch
Confidence 9999999873 67899998864320 0 0011 2567777775543 246789999999998643
Q ss_pred -hhHHHHhhhc-CCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEE
Q 003260 420 -KQKEKIASFK-ISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFY 497 (835)
Q Consensus 420 -~~~e~l~~l~-~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~~~~~~~~l~~~i~~~l~~ggqvlV 497 (835)
.....+..+. ...+++++|||. +..............+.... ...+......... .+.. + ..++ +|
T Consensus 258 ~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~~~~~~v~~~~--r~~~l~~~~~~l~------~l~~-~-~~g~-iI 325 (677)
T 3rc3_A 258 WAWTRALLGLCAEEVHLCGEPAAI-DLVMELMYTTGEEVEVRDYK--RLTPISVLDHALE------SLDN-L-RPGD-CI 325 (677)
T ss_dssp HHHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHHHTCCEEEEECC--CSSCEEECSSCCC------SGGG-C-CTTE-EE
T ss_pred HHHHHHHHccCccceEEEeccchH-HHHHHHHHhcCCceEEEEee--ecchHHHHHHHHH------HHHh-c-CCCC-EE
Confidence 2334455555 678999999994 22222222211222222111 1111111000000 0000 1 2344 67
Q ss_pred EecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhc--CCeeEEEEcCcCCcCCCCCCccEEEEecCCC--
Q 003260 498 VLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQ--GAIKILICTNIVESGLDIQNANTIIVQDVQQ-- 573 (835)
Q Consensus 498 f~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~--g~~~ILVaT~iie~GIDIp~v~~VIi~d~p~-- 573 (835)
||+++++++.+++.|.+. ++.+.++||+|++.+|+.+++.|++ |.++|||||+++++|||+ ++++||+++.++
T Consensus 326 f~~s~~~ie~la~~L~~~--g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~ 402 (677)
T 3rc3_A 326 VCFSKNDIYSVSRQIEIR--GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPS 402 (677)
T ss_dssp ECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC--
T ss_pred EEcCHHHHHHHHHHHHhc--CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccc
Confidence 799999999999999987 8899999999999999999999999 889999999999999999 799999999843
Q ss_pred -----------CChhHHHHHhcccCCCCC---ceEEEEEecCC
Q 003260 574 -----------FGLAQLYQLRGRVGRADK---EAHAYLFYPDK 602 (835)
Q Consensus 574 -----------~sl~~l~Qr~GRaGR~g~---~G~ay~l~~~~ 602 (835)
.+.++|+||+|||||.|. .|.||++++.+
T Consensus 403 ~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d 445 (677)
T 3rc3_A 403 INEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHED 445 (677)
T ss_dssp ---------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTH
T ss_pred cccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecch
Confidence 378999999999999995 48999987653
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.97 E-value=4.6e-30 Score=296.30 Aligned_cols=304 Identities=17% Similarity=0.189 Sum_probs=213.6
Q ss_pred CCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC--CCEEEEEcccHHHHHHHHHHHHHhh
Q 003260 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 278 f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~--g~qvlVLvPtr~LA~Q~~~~~~~~f 355 (835)
+...|+|+|.++++.+..... .+.+.|++.+||+|||.+++..+...... ..++||+||+ .|+.||.+++.+++
T Consensus 34 ~~~~L~~~Q~~~v~~l~~~~~---~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 34 IKANLRPYQIKGFSWMRFMNK---LGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKFA 109 (500)
T ss_dssp CSSCCCHHHHHHHHHHHHHHH---TTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHC
T ss_pred hhccchHHHHHHHHHHHHHhh---CCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHHC
Confidence 446899999999987754321 24679999999999999987766655443 3689999995 58899999999743
Q ss_pred cCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccc--cCCccEEEEcCccccchh---hHHHHhhhcC
Q 003260 356 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV--YNNLGLLVVDEEQRFGVK---QKEKIASFKI 430 (835)
Q Consensus 356 ~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~--~~~l~llVIDEaHr~g~~---~~e~l~~l~~ 430 (835)
++.++.++++.... ...+..+|+|+|++.+..... ..++++||+||||++... ....+..+ .
T Consensus 110 ---~~~~v~~~~g~~~~---------~~~~~~~ivi~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l-~ 176 (500)
T 1z63_A 110 ---PHLRFAVFHEDRSK---------IKLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKEL-K 176 (500)
T ss_dssp ---TTSCEEECSSSTTS---------CCGGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSCTTSHHHHHHHTS-C
T ss_pred ---CCceEEEEecCchh---------ccccCCcEEEeeHHHHhccchhcCCCcCEEEEeCccccCCHhHHHHHHHHhh-c
Confidence 35778888775421 122458999999999976543 356899999999998432 23445444 4
Q ss_pred CceEEEeecCCChhhHHHHH---hcC---------------------------------CCccee-----------cCCC
Q 003260 431 SVDVLTLSATPIPRTLYLAL---TGF---------------------------------RDASLI-----------STPP 463 (835)
Q Consensus 431 ~~~vL~lSATp~p~tl~~~~---~g~---------------------------------~d~s~I-----------~~~p 463 (835)
..+.++|||||......... ..+ ..+.++ ..|+
T Consensus 177 ~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~ 256 (500)
T 1z63_A 177 SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPD 256 (500)
T ss_dssp EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCS
T ss_pred cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCC
Confidence 56789999999654321110 000 000001 0111
Q ss_pred CCccceeEEecccCH-----------------------------------------------------------HHHHHH
Q 003260 464 PERLPIKTHLSAFSK-----------------------------------------------------------EKVISA 484 (835)
Q Consensus 464 ~~r~~v~~~~~~~~~-----------------------------------------------------------~~l~~~ 484 (835)
..... .....+. ..+.+.
T Consensus 257 ~~~~~---v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~ 333 (500)
T 1z63_A 257 KIETN---VYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEI 333 (500)
T ss_dssp EEEEE---EEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHH
T ss_pred CeEEE---EEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHH
Confidence 11000 0011110 112233
Q ss_pred HHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcC-Cee-EEEEcCcCCcCCCCCC
Q 003260 485 IKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIK-ILICTNIVESGLDIQN 562 (835)
Q Consensus 485 i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g-~~~-ILVaT~iie~GIDIp~ 562 (835)
+......+.+++|||+.+..++.+++.|.... +..+..+||+++..+|+++++.|+++ ..+ +|+||+++++|+|+|+
T Consensus 334 l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~-~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~ 412 (500)
T 1z63_A 334 IEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL-NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS 412 (500)
T ss_dssp HHHHHTTTCCEEEECSCHHHHHHHHHHHHHHH-TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTT
T ss_pred HHHHHccCCcEEEEEehHHHHHHHHHHHHHhh-CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhh
Confidence 44444578899999999999999999998742 57788999999999999999999998 555 7999999999999999
Q ss_pred ccEEEEecCCCCChhHHHHHhcccCCCCCc--eEEEEEecCCC
Q 003260 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKE--AHAYLFYPDKS 603 (835)
Q Consensus 563 v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~--G~ay~l~~~~~ 603 (835)
+++||++|.| |++..+.|++||++|.|+. ..+|.++..+.
T Consensus 413 ~~~vi~~d~~-~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 413 ANRVIHFDRW-WNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp CSEEEESSCC-SCC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred CCEEEEeCCC-CCcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 9999999998 6999999999999999955 45577777764
No 55
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=1.2e-26 Score=276.66 Aligned_cols=317 Identities=17% Similarity=0.218 Sum_probs=219.0
Q ss_pred CCCCHhHHHHHHHHHHhhhcC--CCCCcEEEEccCCCcccHHHHHHHHHHHcCC-------CEEEEEcccHHHHHHHHHH
Q 003260 280 YEPTPDQKKAFLDVERDLTER--ETPMDRLICGDVGFGKTEVALRAIFCVVSAG-------KQAMVLAPTIVLAKQHFDV 350 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~--~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g-------~qvlVLvPtr~LA~Q~~~~ 350 (835)
..|+|+|.+++..+....... ..+...|++.+||+|||++++..+......+ +++||++|+ .|+.||.++
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 479999999999887643211 2356789999999999999988777665432 469999997 788999999
Q ss_pred HHHhhcCCCCcEEEEecCCCCHHHHHHHHHhh-hc----CCcceeeccHHHhhccc---ccCCccEEEEcCccccch---
Q 003260 351 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI-KH----GHLNIIVGTHSLLGSRV---VYNNLGLLVVDEEQRFGV--- 419 (835)
Q Consensus 351 ~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l-~~----G~~dIIVgT~~~L~~~l---~~~~l~llVIDEaHr~g~--- 419 (835)
+.+++.. .+.+..++++. ..+....+... .. ...+|+|+|++.+.... .-.++++||+||+|++..
T Consensus 133 ~~~~~~~--~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~ 209 (644)
T 1z3i_X 133 VGKWLGG--RVQPVAIDGGS-KDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDN 209 (644)
T ss_dssp HHHHHGG--GCCEEEECSSC-HHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCH
T ss_pred HHHHcCC--CeeEEEEeCCC-HHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhh
Confidence 9986543 35566666543 22322222222 21 14789999999887532 335789999999999843
Q ss_pred hhHHHHhhhcCCceEEEeecCCChhhHH-------HH-----------Hh------------------------------
Q 003260 420 KQKEKIASFKISVDVLTLSATPIPRTLY-------LA-----------LT------------------------------ 451 (835)
Q Consensus 420 ~~~e~l~~l~~~~~vL~lSATp~p~tl~-------~~-----------~~------------------------------ 451 (835)
.....+..+ ...+.++|||||....+. +. ..
T Consensus 210 ~~~~al~~l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~ 288 (644)
T 1z3i_X 210 QTYLALNSM-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELI 288 (644)
T ss_dssp HHHHHHHHH-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHH
Confidence 333445555 445789999999754310 00 00
Q ss_pred ------cCCCc-cee--cCCCCCccceeEEec------------------------------------------------
Q 003260 452 ------GFRDA-SLI--STPPPERLPIKTHLS------------------------------------------------ 474 (835)
Q Consensus 452 ------g~~d~-s~I--~~~p~~r~~v~~~~~------------------------------------------------ 474 (835)
.++.. ..+ ..|+.....+.....
T Consensus 289 ~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~ 368 (644)
T 1z3i_X 289 SIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYE 368 (644)
T ss_dssp HHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHH
Confidence 00000 000 011100000000000
Q ss_pred ---------------------------ccC-HHHHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEE
Q 003260 475 ---------------------------AFS-KEKVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA 524 (835)
Q Consensus 475 ---------------------------~~~-~~~l~~~i~~~l--~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~l 524 (835)
..+ +..++..+...+ ..+.+++||++....++.+...|... ++.+..+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~--g~~~~~l 446 (644)
T 1z3i_X 369 KCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR--RYLYVRL 446 (644)
T ss_dssp HHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH--TCCEEEE
T ss_pred HHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHC--CCCEEEE
Confidence 000 001222233333 24689999999999999999999988 8899999
Q ss_pred eCCCCHHHHHHHHHHhhcCCe---eEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCc--eEEEEEe
Q 003260 525 HGQQYSRQLEETMEKFAQGAI---KILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE--AHAYLFY 599 (835)
Q Consensus 525 hg~m~~~ere~vl~~F~~g~~---~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~--G~ay~l~ 599 (835)
||+++..+|+.+++.|+++.. .+|++|.+++.|+|++++++||++|.+ |+++.+.|++||++|.|+. ..+|.|+
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~-wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPD-WNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCC-SSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCC-CCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 999999999999999999865 489999999999999999999999999 6999999999999999954 5677788
Q ss_pred cCCCc
Q 003260 600 PDKSL 604 (835)
Q Consensus 600 ~~~~~ 604 (835)
....+
T Consensus 526 ~~~ti 530 (644)
T 1z3i_X 526 STGTI 530 (644)
T ss_dssp ETTSH
T ss_pred ECCCH
Confidence 87754
No 56
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.95 E-value=1.1e-26 Score=271.56 Aligned_cols=307 Identities=17% Similarity=0.212 Sum_probs=222.3
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHH
Q 003260 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 273 ~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~ 352 (835)
+-....+..|++.|..+.-.+.+ + .|..+.||+|||++|.+|++-....|+.|.|++|+..||.|-++.+.
T Consensus 67 Aa~R~lg~r~~dvQligg~~L~~-------G--~iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~ 137 (822)
T 3jux_A 67 AARRTLGMRPFDVQVMGGIALHE-------G--KVAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMG 137 (822)
T ss_dssp HHHHHTSCCCCHHHHHHHHHHHT-------T--CEEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHHhC-------C--ChhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHH
Confidence 34455677899999988765532 2 39999999999999999988666679999999999999999999998
Q ss_pred HhhcCCCCcEEEEecC--------------------------------------------------CCCHHHHHHHHHhh
Q 003260 353 ERFSKYPDIKVGLLSR--------------------------------------------------FQSKAEKEEHLDMI 382 (835)
Q Consensus 353 ~~f~~~~gi~V~~l~g--------------------------------------------------~~s~~e~~~~l~~l 382 (835)
..+. +.|++|+++.. +.+..++...+
T Consensus 138 ~l~~-~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--- 213 (822)
T 3jux_A 138 PVYL-FLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--- 213 (822)
T ss_dssp HHHH-HTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH---
T ss_pred HHHH-HhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh---
Confidence 7554 45899998887 23334444444
Q ss_pred hcCCcceeeccHHHh-----hccc-------ccCCccEEEEcCcccc---------------------------------
Q 003260 383 KHGHLNIIVGTHSLL-----GSRV-------VYNNLGLLVVDEEQRF--------------------------------- 417 (835)
Q Consensus 383 ~~G~~dIIVgT~~~L-----~~~l-------~~~~l~llVIDEaHr~--------------------------------- 417 (835)
.+||++||..-+ .+.+ ..+.+.+.||||+|.+
T Consensus 214 ---~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~ 290 (822)
T 3jux_A 214 ---LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFV 290 (822)
T ss_dssp ---HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSC
T ss_pred ---cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcC
Confidence 279999998644 3332 2356889999999920
Q ss_pred -------------------chhhHHH----------------------Hhhh----------------------------
Q 003260 418 -------------------GVKQKEK----------------------IASF---------------------------- 428 (835)
Q Consensus 418 -------------------g~~~~e~----------------------l~~l---------------------------- 428 (835)
|....+. ++..
T Consensus 291 ~~~dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~ 370 (822)
T 3jux_A 291 KDKDFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLP 370 (822)
T ss_dssp BTTTEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCC
T ss_pred cCCcEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCC
Confidence 0000000 0000
Q ss_pred ------------------------------------cCCceEEEeecCCChhhHHHHHhcCCCcceecCCCC---Cccce
Q 003260 429 ------------------------------------KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP---ERLPI 469 (835)
Q Consensus 429 ------------------------------------~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~---~r~~v 469 (835)
+...++.+||||.......+...+ ++.++.+|+. .+...
T Consensus 371 grr~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY--~l~vv~IPtnkp~~R~d~ 448 (822)
T 3jux_A 371 GRRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVY--GMEVVVIPTHKPMIRKDH 448 (822)
T ss_dssp SCCCGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHS--CCCEEECCCSSCCCCEEC
T ss_pred CCcCchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHh--CCeEEEECCCCCcceeec
Confidence 113568899999876655544444 3445555432 22222
Q ss_pred eEEecccCHHHHHHHH----HHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCe
Q 003260 470 KTHLSAFSKEKVISAI----KYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAI 545 (835)
Q Consensus 470 ~~~~~~~~~~~l~~~i----~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~ 545 (835)
...+. .+......++ ......+.++||||++++.++.++..|... ++.+.++||++...++..+..+++.|
T Consensus 449 ~d~vy-~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~--Gi~~~vLhgkq~~rE~~ii~~ag~~g-- 523 (822)
T 3jux_A 449 DDLVF-RTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKK--GIPHQVLNAKYHEKEAEIVAKAGQKG-- 523 (822)
T ss_dssp CCEEE-SSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTT--TCCCEEECSCHHHHHHHHHHHHHSTT--
T ss_pred CcEEE-ecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHC--CCCEEEeeCCchHHHHHHHHhCCCCC--
Confidence 11222 2333333343 333346789999999999999999999998 89999999996666665566666655
Q ss_pred eEEEEcCcCCcCCCCC--------CccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 546 KILICTNIVESGLDIQ--------NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 546 ~ILVaT~iie~GIDIp--------~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
.|+|||+++++|+||+ +..+||+++.|. +...|.||+||+||.|.+|.+++|++.++
T Consensus 524 ~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pe-s~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 524 MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHE-SRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCS-SHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCC-CHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 6999999999999998 667999999997 99999999999999999999999998765
No 57
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.1e-27 Score=286.48 Aligned_cols=315 Identities=15% Similarity=0.190 Sum_probs=220.4
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHH---cCCCEEEEEcccHHHHHHHHHHHHHhh
Q 003260 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV---SAGKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 279 ~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l---~~g~qvlVLvPtr~LA~Q~~~~~~~~f 355 (835)
..+|+|+|.+++..+...+ ..+.+.||+.+||+|||++++..+.... ...+.+||+|| ..|+.||.++|..++
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~---~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~ 309 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLW---SKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWA 309 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHH---TTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHS
T ss_pred CCCcCHHHHHHHHHHHHHh---hcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHC
Confidence 3489999999999887544 2356899999999999999876665432 34578999999 678899999998753
Q ss_pred cCCCCcEEEEecCCCCHHHHHHHHHh--------hhcCCcceeeccHHHhhccc---ccCCccEEEEcCccccc---hhh
Q 003260 356 SKYPDIKVGLLSRFQSKAEKEEHLDM--------IKHGHLNIIVGTHSLLGSRV---VYNNLGLLVVDEEQRFG---VKQ 421 (835)
Q Consensus 356 ~~~~gi~V~~l~g~~s~~e~~~~l~~--------l~~G~~dIIVgT~~~L~~~l---~~~~l~llVIDEaHr~g---~~~ 421 (835)
|++++.+++|............. ...+.++|+|+|++.+.... .-.++++|||||||++. ...
T Consensus 310 ---p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~ 386 (800)
T 3mwy_W 310 ---PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSL 386 (800)
T ss_dssp ---TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHH
T ss_pred ---CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhHH
Confidence 46788888886543322211110 23356899999999887543 22468999999999983 233
Q ss_pred HHHHhhhcCCceEEEeecCCChhhHHH---HHhcC------------------------------CCcceec--------
Q 003260 422 KEKIASFKISVDVLTLSATPIPRTLYL---ALTGF------------------------------RDASLIS-------- 460 (835)
Q Consensus 422 ~e~l~~l~~~~~vL~lSATp~p~tl~~---~~~g~------------------------------~d~s~I~-------- 460 (835)
...+..+ .....++|||||....+.. .+.++ ..+.++.
T Consensus 387 ~~~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~ 465 (800)
T 3mwy_W 387 YESLNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEK 465 (800)
T ss_dssp HHHHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTT
T ss_pred HHHHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhh
Confidence 4445444 4456788999995432111 00000 0000000
Q ss_pred -CCCCCccceeEEecc----------------------------------------------------------------
Q 003260 461 -TPPPERLPIKTHLSA---------------------------------------------------------------- 475 (835)
Q Consensus 461 -~~p~~r~~v~~~~~~---------------------------------------------------------------- 475 (835)
.|+.....+......
T Consensus 466 ~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~ 545 (800)
T 3mwy_W 466 SLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRE 545 (800)
T ss_dssp TSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSH
T ss_pred ccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHH
Confidence 111100000000000
Q ss_pred ---------cCH-HHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCe
Q 003260 476 ---------FSK-EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAI 545 (835)
Q Consensus 476 ---------~~~-~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~ 545 (835)
..+ ..+...+......+.++|||+..+..++.+...|... ++.+..+||+++..+|+.+++.|+++..
T Consensus 546 ~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~~~eR~~~i~~F~~~~~ 623 (800)
T 3mwy_W 546 NVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK--GINFQRLDGTVPSAQRRISIDHFNSPDS 623 (800)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHH--TCCCEEESTTSCHHHHHHHHHTTSSTTC
T ss_pred HHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhCCCC
Confidence 000 0112222233346789999999999999999999988 8899999999999999999999998654
Q ss_pred ---eEEEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCC--ceEEEEEecCCCc
Q 003260 546 ---KILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK--EAHAYLFYPDKSL 604 (835)
Q Consensus 546 ---~ILVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~--~G~ay~l~~~~~~ 604 (835)
.+|++|.+++.|||++.+++||++|.+ |++..+.|++||++|.|+ ...+|.|++...+
T Consensus 624 ~~~v~LlSt~agg~GlNL~~a~~VI~~D~~-wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~Ti 686 (800)
T 3mwy_W 624 NDFVFLLSTRAGGLGINLMTADTVVIFDSD-WNPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 686 (800)
T ss_dssp SCCCEEEEHHHHTTTCCCTTCCEEEESSCC-SCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSH
T ss_pred CceEEEEecccccCCCCccccceEEEecCC-CChhhHHHHHHHHHhcCCCceEEEEEEecCCCH
Confidence 499999999999999999999999998 699999999999999994 5777888888765
No 58
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.95 E-value=1.1e-26 Score=287.43 Aligned_cols=308 Identities=15% Similarity=0.109 Sum_probs=203.7
Q ss_pred CCCCHhHHHHHHHHHHhhhcC-------CCCCcEEEEccCCCcccHHHHHHHHHHHcC---CCEEEEEcccHHHHHHHHH
Q 003260 280 YEPTPDQKKAFLDVERDLTER-------ETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~-------~~~~d~Ll~a~TGsGKT~val~a~l~~l~~---g~qvlVLvPtr~LA~Q~~~ 349 (835)
..|+|+|..|++.+++.+..+ ..+++.+++++||||||++++..+ ..+.. ..++|||+|+++|+.|+.+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 469999999999998755321 123678999999999999985444 44432 3699999999999999999
Q ss_pred HHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-------cccCCccEEEEcCccccchh-h
Q 003260 350 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-------VVYNNLGLLVVDEEQRFGVK-Q 421 (835)
Q Consensus 350 ~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-------l~~~~l~llVIDEaHr~g~~-~ 421 (835)
+|.. |... .+.+..+... ....+..+..+|+|+|++.|... ..+....+||+||||++... .
T Consensus 349 ~f~~-f~~~------~v~~~~s~~~---l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~~ 418 (1038)
T 2w00_A 349 EYQR-FSPD------SVNGSENTAG---LKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGEA 418 (1038)
T ss_dssp HHHT-TSTT------CSSSSCCCHH---HHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHHH
T ss_pred HHHH-hccc------ccccccCHHH---HHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcchHH
Confidence 9986 5432 1223333332 22334445689999999988642 13567789999999998653 2
Q ss_pred HHHHhhhcCCceEEEeecCCChh--------hHHHHH-------------hcCCCccee-cCCCCCcc-------c----
Q 003260 422 KEKIASFKISVDVLTLSATPIPR--------TLYLAL-------------TGFRDASLI-STPPPERL-------P---- 468 (835)
Q Consensus 422 ~e~l~~l~~~~~vL~lSATp~p~--------tl~~~~-------------~g~~d~s~I-~~~p~~r~-------~---- 468 (835)
...+....++.++++|||||... +...+- .++.-+..+ ........ .
T Consensus 419 ~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~ 498 (1038)
T 2w00_A 419 QKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKL 498 (1038)
T ss_dssp HHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHH
T ss_pred HHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHH
Confidence 44555555778999999999742 222110 111100000 00000000 0
Q ss_pred --eeEEecccCHH---HHHHHHHHHHh----------cCCeEEEEecCccChHHHHHHHHhhC----------CCCeEE-
Q 003260 469 --IKTHLSAFSKE---KVISAIKYELD----------RGGQVFYVLPRIKGLEEPMDFLQQAF----------PGVDIA- 522 (835)
Q Consensus 469 --v~~~~~~~~~~---~l~~~i~~~l~----------~ggqvlVf~n~v~~~e~l~~~L~~~~----------p~~~v~- 522 (835)
+.......... .+...+..... .+.+++|||+++..|..+++.|.+.. ++.+++
T Consensus 499 ~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~av 578 (1038)
T 2w00_A 499 SAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIAT 578 (1038)
T ss_dssp HHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEE
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEE
Confidence 00000001111 22333333221 34689999999999999999998764 124554
Q ss_pred EEeCC----------C----------CH-----------------------------HHHHHHHHHhhcCCeeEEEEcCc
Q 003260 523 IAHGQ----------Q----------YS-----------------------------RQLEETMEKFAQGAIKILICTNI 553 (835)
Q Consensus 523 ~lhg~----------m----------~~-----------------------------~ere~vl~~F~~g~~~ILVaT~i 553 (835)
++||. + ++ ..|..++++|++|+++|||+|++
T Consensus 579 v~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~ 658 (1038)
T 2w00_A 579 IFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGM 658 (1038)
T ss_dssp ECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESST
T ss_pred EEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcch
Confidence 45542 2 22 14788999999999999999999
Q ss_pred CCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCc----eEEEEEec
Q 003260 554 VESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE----AHAYLFYP 600 (835)
Q Consensus 554 ie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~----G~ay~l~~ 600 (835)
+.+|+|+|.+ .++.+|.|. +...|+|++||++|.+.. |.++.|..
T Consensus 659 lltGfDiP~l-~tlylDkpl-~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 659 FLTGFDAPTL-NTLFVDKNL-RYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp TSSSCCCTTE-EEEEEESCC-CHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHhCcCcccc-cEEEEccCC-CccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999999 556778885 889999999999998753 77777664
No 59
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=2.3e-25 Score=266.16 Aligned_cols=165 Identities=21% Similarity=0.281 Sum_probs=128.1
Q ss_pred CceEEEeecCCChhhHHHHHhcCCCcceecCCCCCccceeEEeccc--CHHHHHHHHHHHHhcCCeEEEEecCccChHHH
Q 003260 431 SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAF--SKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 508 (835)
Q Consensus 431 ~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~~~~--~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~l 508 (835)
..+++++||||.+...... ... ...+..+.....+... +... ....++..+......+.+++|||+++..++.+
T Consensus 380 ~~q~i~~SAT~~~~~~~~~-~~~--~~~~~r~~~l~~p~i~-v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L 455 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAHS-GRV--VEQIIRPTGLLDPLVR-VKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEEL 455 (664)
T ss_dssp CSEEEEEESSCCHHHHHHC-SEE--EEECSCTTCCCCCEEE-EECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred cCCEEEEecCCCHHHHHhh-hCe--eeeeeccCCCCCCeEE-EecccchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHH
Confidence 5789999999976543321 100 0111111111122211 1111 23455666766677889999999999999999
Q ss_pred HHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecC-----CCCChhHHHHHh
Q 003260 509 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV-----QQFGLAQLYQLR 583 (835)
Q Consensus 509 ~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~-----p~~sl~~l~Qr~ 583 (835)
++.|.+. ++.+..+||+|++.+|..++++|++|+++|||||+++++|+|+|++++||+++. |. +..+|+||+
T Consensus 456 ~~~L~~~--gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~-s~~~~iQr~ 532 (664)
T 1c4o_A 456 TSFLVEH--GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLR-SERSLIQTI 532 (664)
T ss_dssp HHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGG-SHHHHHHHH
T ss_pred HHHHHhc--CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCC-CHHHHHHHH
Confidence 9999998 889999999999999999999999999999999999999999999999999998 54 778999999
Q ss_pred cccCCCCCceEEEEEecCCC
Q 003260 584 GRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 584 GRaGR~g~~G~ay~l~~~~~ 603 (835)
||+||.+ .|.|++++++.+
T Consensus 533 GRagR~~-~G~~i~~~~~~~ 551 (664)
T 1c4o_A 533 GRAARNA-RGEVWLYADRVS 551 (664)
T ss_dssp GGGTTST-TCEEEEECSSCC
T ss_pred CccCcCC-CCEEEEEEcCCC
Confidence 9999995 899999998764
No 60
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=1e-24 Score=260.53 Aligned_cols=166 Identities=20% Similarity=0.317 Sum_probs=129.0
Q ss_pred CCceEEEeecCCChhhHHHHHhcCCCcceecCCCCCccceeEEeccc--CHHHHHHHHHHHHhcCCeEEEEecCccChHH
Q 003260 430 ISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAF--SKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507 (835)
Q Consensus 430 ~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~p~~r~~v~~~~~~~--~~~~l~~~i~~~l~~ggqvlVf~n~v~~~e~ 507 (835)
...+++++||||.+...... ... ......+.....|.. .+... ....++..+......+++++|||+++..++.
T Consensus 385 ~~~q~i~~SAT~~~~~~~~~-~~~--~~~~~r~~~l~~p~i-~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~ 460 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEHT-DEM--VEQIIRPTGLLDPLI-DVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSED 460 (661)
T ss_dssp TCSEEEEECSSCCHHHHHHC-SSC--EEECCCTTCCCCCEE-EEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHH
T ss_pred cCCCEEEEecCCChhHHHhh-hCe--eeeeecccCCCCCeE-EEecccchHHHHHHHHHHHHhcCCeEEEEECCHHHHHH
Confidence 35789999999976554321 111 111111111112221 11111 2345566677767778999999999999999
Q ss_pred HHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEecC-----CCCChhHHHHH
Q 003260 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV-----QQFGLAQLYQL 582 (835)
Q Consensus 508 l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d~-----p~~sl~~l~Qr 582 (835)
+++.|.+. ++++.++||++++.+|..++++|++|+++|||||+++++|+|+|++++||+++. |. +..+|+||
T Consensus 461 L~~~L~~~--gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~-s~~~~iQr 537 (661)
T 2d7d_A 461 LTDYLKEI--GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLR-SERSLIQT 537 (661)
T ss_dssp HHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTT-SHHHHHHH
T ss_pred HHHHHHhc--CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCC-CHHHHHHH
Confidence 99999998 889999999999999999999999999999999999999999999999999998 54 67999999
Q ss_pred hcccCCCCCceEEEEEecCCC
Q 003260 583 RGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 583 ~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+||+||. ..|.|++|+++.+
T Consensus 538 ~GRagR~-~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 538 IGRAARN-AEGRVIMYADKIT 557 (661)
T ss_dssp HHTTTTS-TTCEEEEECSSCC
T ss_pred hCcccCC-CCCEEEEEEeCCC
Confidence 9999998 6899999998764
No 61
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.91 E-value=1.6e-23 Score=219.25 Aligned_cols=184 Identities=23% Similarity=0.180 Sum_probs=146.4
Q ss_pred CCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc--------CCCEEEEE
Q 003260 267 KNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--------AGKQAMVL 337 (835)
Q Consensus 267 ~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~--------~g~qvlVL 337 (835)
.++ +.+.+.+.+...|||+|.+|++.+++ ++|+++++|||||||++|++|++..+. .+.+++|+
T Consensus 36 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil 108 (242)
T 3fe2_A 36 FPANVMDVIARQNFTEPTAIQAQGWPVALS-------GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 108 (242)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHHHHH-------TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEE
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEE
Confidence 444 66777776666799999999999875 478999999999999999999988764 36789999
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEc
Q 003260 338 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVD 412 (835)
Q Consensus 338 vPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVID 412 (835)
+||++|+.|+++.+....... ++++..++|+.+....... +..+ ++|+|+||+.|.+ ...+.++++||||
T Consensus 109 ~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~---~~~~-~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViD 183 (242)
T 3fe2_A 109 APTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRD---LERG-VEICIATPGRLIDFLECGKTNLRRTTYLVLD 183 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHTSCCCTTCCEEEET
T ss_pred eCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHH---hcCC-CCEEEECHHHHHHHHHcCCCCcccccEEEEe
Confidence 999999999999998754444 7899999998776654333 3444 8999999998864 3457899999999
Q ss_pred Cccccch-----hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCC
Q 003260 413 EEQRFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTP 462 (835)
Q Consensus 413 EaHr~g~-----~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~ 462 (835)
|||++.. .....+..++++.++++||||+++.....+...+.++..|...
T Consensus 184 Eah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 184 EADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp THHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred CHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 9998632 2233455566789999999999888888888888877766654
No 62
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=3.2e-23 Score=213.10 Aligned_cols=189 Identities=19% Similarity=0.145 Sum_probs=147.3
Q ss_pred CCCCCCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC---CCEEEE
Q 003260 261 KRPPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMV 336 (835)
Q Consensus 261 ~~~~~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~---g~qvlV 336 (835)
....++.++ +.+.+.+.+...|+|+|.+|++.+++ ++|+++++|||+|||++|+.+++..+.. +.+++|
T Consensus 15 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~li 87 (220)
T 1t6n_A 15 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL-------GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLV 87 (220)
T ss_dssp CSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEE
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEE
Confidence 344456666 77888776555799999999999875 3689999999999999999999987654 358999
Q ss_pred EcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEE
Q 003260 337 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVV 411 (835)
Q Consensus 337 LvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVI 411 (835)
++||++|+.|+++++.+.....+++++..++|+.+..... ..+..+.++|+|+||+.+.. .+.+.++++||+
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 88 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 9999999999999999855555578999999987765543 33445668999999998753 345788999999
Q ss_pred cCccccch--hhH----HHHhhhcCCceEEEeecCCChhhHHHHHhcCCCccee
Q 003260 412 DEEQRFGV--KQK----EKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLI 459 (835)
Q Consensus 412 DEaHr~g~--~~~----e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I 459 (835)
||||++.. ... ..+.....+.+++++|||+++....+....+.++..+
T Consensus 165 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i 218 (220)
T 1t6n_A 165 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 218 (220)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEE
T ss_pred cCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEE
Confidence 99998743 111 2233445688999999999888887777777776554
No 63
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.91 E-value=1.8e-23 Score=216.31 Aligned_cols=177 Identities=23% Similarity=0.262 Sum_probs=137.5
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc---------CCCEEEEEccc
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---------AGKQAMVLAPT 340 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~---------~g~qvlVLvPt 340 (835)
+.+.+.+.+...|||+|.+|++.+++ ++|+++++|||||||++|+++++..+. .+.+++|++||
T Consensus 31 l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt 103 (228)
T 3iuy_A 31 LLKSIIRVGILKPTPIQSQAWPIILQ-------GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPT 103 (228)
T ss_dssp HHHHHHHHTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSS
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCC
Confidence 67778777777999999999999874 478999999999999999999887654 46789999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCcc
Q 003260 341 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 341 r~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaH 415 (835)
++|+.|+++++.. +.. .++++..++++.+.... ...+..+ ++|+|+||+.|.+ ...+.++++|||||||
T Consensus 104 ~~L~~q~~~~~~~-~~~-~~~~~~~~~~~~~~~~~---~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah 177 (228)
T 3iuy_A 104 RELALHVEAECSK-YSY-KGLKSICIYGGRNRNGQ---IEDISKG-VDIIIATPGRLNDLQMNNSVNLRSITYLVIDEAD 177 (228)
T ss_dssp HHHHHHHHHHHHH-HCC-TTCCEEEECC------C---HHHHHSC-CSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHH
T ss_pred HHHHHHHHHHHHH-hcc-cCceEEEEECCCChHHH---HHHhcCC-CCEEEECHHHHHHHHHcCCcCcccceEEEEECHH
Confidence 9999999999987 543 36888888887654432 2333444 8999999998864 3457889999999999
Q ss_pred ccch-----hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCccee
Q 003260 416 RFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLI 459 (835)
Q Consensus 416 r~g~-----~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I 459 (835)
++.. .....+..+..+.+++++|||+++.....+...+.++..+
T Consensus 178 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 226 (228)
T 3iuy_A 178 KMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIV 226 (228)
T ss_dssp HHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEE
T ss_pred HHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEE
Confidence 8532 2234455567789999999999888888888777766544
No 64
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=4.9e-22 Score=236.16 Aligned_cols=126 Identities=20% Similarity=0.156 Sum_probs=104.5
Q ss_pred HHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHh
Q 003260 275 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSER 354 (835)
Q Consensus 275 ~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~ 354 (835)
....++.|||+|..+++.+++ ++ |.++.||+|||++|.+|++.....|.+|+|++||++||.|+++.+...
T Consensus 73 ~R~lG~~Pt~VQ~~~ip~Llq-------G~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 73 KRYLGMRHFDVQLIGGAVLHE-------GK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp HHHTCCCCCHHHHHHHHHHHT-------TS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHhhcccccC-------Cc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 445677999999999998864 22 999999999999999999766567899999999999999999999985
Q ss_pred hcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhh-----cc-------cccC---CccEEEEcCccc
Q 003260 355 FSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-----SR-------VVYN---NLGLLVVDEEQR 416 (835)
Q Consensus 355 f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~-----~~-------l~~~---~l~llVIDEaHr 416 (835)
+. +.|++|+++.|+.+..++.... + +||+||||+.|. +. +.++ +++++||||+|+
T Consensus 144 ~~-~lGLsv~~i~Gg~~~~~r~~ay-----~-~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 144 YR-GLGLSVGVIQHASTPAERRKAY-----L-ADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp HH-TTTCCEEECCTTCCHHHHHHHH-----T-SSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred HH-hcCCeEEEEeCCCCHHHHHHHc-----C-CCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 54 4589999999998865544332 3 899999999882 22 4567 899999999996
No 65
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.90 E-value=4.1e-23 Score=219.36 Aligned_cols=175 Identities=25% Similarity=0.266 Sum_probs=139.6
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc-------CCCEEEEEcccHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-------AGKQAMVLAPTIV 342 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~-------~g~qvlVLvPtr~ 342 (835)
+.+.+.+.+...|+|+|.+|++.++. ++|+++++|||||||++|+++++..+. .+.+++|++||++
T Consensus 65 l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~ 137 (262)
T 3ly5_A 65 TLKAIKEMGFTNMTEIQHKSIRPLLE-------GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRE 137 (262)
T ss_dssp HHHHHHHTTCCBCCHHHHHHHHHHHH-------TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhC-------CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHH
Confidence 67777776666899999999999875 368999999999999999999987663 4788999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc------ccccCCccEEEEcCccc
Q 003260 343 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVVDEEQR 416 (835)
Q Consensus 343 LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~------~l~~~~l~llVIDEaHr 416 (835)
||.|+++.+++.+... +..+..+.|+...... ...+..+ ++|+|+||+.+.. ...+.++++|||||||+
T Consensus 138 La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~---~~~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~ 212 (262)
T 3ly5_A 138 LAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAE---AQKLGNG-INIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADR 212 (262)
T ss_dssp HHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHH---HHHHHHC-CSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHH
T ss_pred HHHHHHHHHHHHHhhc-CceEEEEECCCCHHHH---HHHhcCC-CCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHH
Confidence 9999999999865544 6889999988765543 3344455 8999999998753 24578899999999998
Q ss_pred cch-----hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCc
Q 003260 417 FGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 456 (835)
Q Consensus 417 ~g~-----~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~ 456 (835)
+.. .....+..+....++++||||+++....++...+.+.
T Consensus 213 l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 213 ILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp HHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred HhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 532 2233445556789999999999988888777665543
No 66
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.90 E-value=6.3e-23 Score=213.07 Aligned_cols=184 Identities=20% Similarity=0.159 Sum_probs=142.4
Q ss_pred CCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc---CCCEEEEEcccH
Q 003260 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPTI 341 (835)
Q Consensus 266 ~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~---~g~qvlVLvPtr 341 (835)
+.++ +.+.+.+.+...|+|+|.+|++.+++ ++|+++++|||+|||++|+++++..+. .+.+++|++||+
T Consensus 30 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~ 102 (230)
T 2oxc_A 30 LLSRPVLEGLRAAGFERPSPVQLKAIPLGRC-------GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTR 102 (230)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCH
Confidence 4444 67777766555799999999999864 478999999999999999999988764 357999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCccc
Q 003260 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQR 416 (835)
Q Consensus 342 ~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaHr 416 (835)
+|+.|+++++.......+++++..++|+.+..+....+ ..++|+|+||+.|.+ .+.+.++++||+||||+
T Consensus 103 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~ 177 (230)
T 2oxc_A 103 EIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADK 177 (230)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHH
T ss_pred HHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchH
Confidence 99999999999855555578999999987766544333 248999999998854 34567899999999998
Q ss_pred cchh-----hH-HHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecC
Q 003260 417 FGVK-----QK-EKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 461 (835)
Q Consensus 417 ~g~~-----~~-e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~ 461 (835)
+... .. ..+..++...+++++|||+++........++.++..+..
T Consensus 178 ~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 178 LLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp HHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred hhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 6321 12 234445568899999999988776767666776665543
No 67
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.90 E-value=7e-23 Score=213.05 Aligned_cols=184 Identities=23% Similarity=0.244 Sum_probs=143.3
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHH-------cCCCEEEE
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-------SAGKQAMV 336 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l-------~~g~qvlV 336 (835)
++.++ +.+.+.+.+...|+|+|.+|++.+++ ++|+++++|||||||++|+.+++..+ ..+.+++|
T Consensus 30 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~-------~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~li 102 (236)
T 2pl3_A 30 FPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQ-------GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLI 102 (236)
T ss_dssp SCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEE
Confidence 34455 77788777777999999999999874 47899999999999999999988775 34678999
Q ss_pred EcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc------ccccCCccEEE
Q 003260 337 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLV 410 (835)
Q Consensus 337 LvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~------~l~~~~l~llV 410 (835)
++||++|+.|+++.+... ....++++..++|+.+.......+ +.++|+|+||+.|.+ ...+.++++||
T Consensus 103 l~Pt~~L~~q~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 176 (236)
T 2pl3_A 103 ISPTRELAYQTFEVLRKV-GKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATDLQMLV 176 (236)
T ss_dssp ECSSHHHHHHHHHHHHHH-TTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEE
T ss_pred EeCCHHHHHHHHHHHHHH-hCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccccccEEE
Confidence 999999999999999974 444468899999987655433332 358999999998854 24567899999
Q ss_pred EcCccccch-----hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecC
Q 003260 411 VDEEQRFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 461 (835)
Q Consensus 411 IDEaHr~g~-----~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~ 461 (835)
+||||++.. .....+..++.+.++++||||+++....++...+.++..+..
T Consensus 177 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~ 232 (236)
T 2pl3_A 177 LDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232 (236)
T ss_dssp ETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEEC
T ss_pred EeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEe
Confidence 999998632 222334555678899999999998888888888877776654
No 68
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.90 E-value=8.7e-23 Score=207.27 Aligned_cols=183 Identities=16% Similarity=0.109 Sum_probs=142.1
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC---CCEEEEEccc
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPT 340 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~---g~qvlVLvPt 340 (835)
++.++ +.+.+.+.+...|+|+|.+|++.+++ ++|+++++|||+|||++|+.+++..+.. +.+++|++||
T Consensus 8 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 80 (206)
T 1vec_A 8 YCLKRELLMGIFEMGWEKPSPIQEESIPIALS-------GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPT 80 (206)
T ss_dssp SCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHT-------TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSC
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHcc-------CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCc
Confidence 45555 77888776666999999999999874 4789999999999999999999887643 5689999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCcc
Q 003260 341 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 341 r~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaH 415 (835)
++|+.|+++.+.+.....+++++..++|+.+..+.. ..+. +.++|+|+||+.|.+ ...+.++++||+||||
T Consensus 81 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~-~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah 156 (206)
T 1vec_A 81 RELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI---MRLD-DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD 156 (206)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH---HHTT-SCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH---HhcC-CCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChH
Confidence 999999999999866655578999999987665432 2333 458999999998753 2356789999999999
Q ss_pred ccchh----h-HHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcce
Q 003260 416 RFGVK----Q-KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 458 (835)
Q Consensus 416 r~g~~----~-~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~ 458 (835)
++... . ...+..++.+.+++++|||+++.........+.++..
T Consensus 157 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~ 204 (206)
T 1vec_A 157 KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYE 204 (206)
T ss_dssp HHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEE
T ss_pred HhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeE
Confidence 86331 1 2233444568999999999988877777776665543
No 69
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.90 E-value=4.4e-23 Score=215.41 Aligned_cols=185 Identities=22% Similarity=0.184 Sum_probs=137.6
Q ss_pred CCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc---CCCEEEEEcccH
Q 003260 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPTI 341 (835)
Q Consensus 266 ~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~---~g~qvlVLvPtr 341 (835)
+.++ +.+.+...+...|+|+|.+|++.+++ ++|+++++|||||||++|+.+++..+. .+.+++|++||+
T Consensus 36 ~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~-------~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~ 108 (237)
T 3bor_A 36 NLKESLLRGIYAYGFEKPSAIQQRAIIPCIK-------GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTR 108 (237)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT-------TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcH
Confidence 4445 66777766666799999999999874 468999999999999999999998765 457999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCccc
Q 003260 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQR 416 (835)
Q Consensus 342 ~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaHr 416 (835)
+|+.|+++.+.. +....++.+..+.++.+... .+..+..+.++|+|+||+.|.+ ...+.++++||+||||+
T Consensus 109 ~L~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 184 (237)
T 3bor_A 109 ELAQQIQKVILA-LGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADE 184 (237)
T ss_dssp HHHHHHHHHHHH-HTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHH
T ss_pred HHHHHHHHHHHH-HhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchH
Confidence 999999999997 44444688888888654433 3445556779999999988754 24567899999999998
Q ss_pred cch-----hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecC
Q 003260 417 FGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 461 (835)
Q Consensus 417 ~g~-----~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~ 461 (835)
+.. .....+..+..+.+++++|||+++.....+...+.++..+..
T Consensus 185 ~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 185 MLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred hhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 632 122334555678999999999998888888887777766644
No 70
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.90 E-value=6.4e-23 Score=211.07 Aligned_cols=186 Identities=22% Similarity=0.210 Sum_probs=144.2
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC---CCEEEEEccc
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPT 340 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~---g~qvlVLvPt 340 (835)
++.++ +.+.+.+.+...|+|+|.+|++.+++ ++|+++++|||||||++|+.+++..+.. +.+++|++||
T Consensus 9 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 81 (219)
T 1q0u_A 9 FPFQPFIIEAIKTLRFYKPTEIQERIIPGALR-------GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPT 81 (219)
T ss_dssp SCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHH-------TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCc
Confidence 45555 77888888888999999999999875 3689999999999999999999887653 5789999999
Q ss_pred HHHHHHHHHHHHHhhcCCC---CcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEc
Q 003260 341 IVLAKQHFDVVSERFSKYP---DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVD 412 (835)
Q Consensus 341 r~LA~Q~~~~~~~~f~~~~---gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVID 412 (835)
++|+.|+++.+.+.....+ ++.+..+.|+.+... ..+.+. ..++|+|+||+.|.+ ...+.++++||||
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 157 (219)
T 1q0u_A 82 RELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQK---ALEKLN-VQPHIVIGTPGRINDFIREQALDVHTAHILVVD 157 (219)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHH---TTCCCS-SCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC
T ss_pred HHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHH---HHHHcC-CCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEc
Confidence 9999999999988554332 578888888754332 222333 358999999998764 3456889999999
Q ss_pred Cccccchh-----hHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecC
Q 003260 413 EEQRFGVK-----QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 461 (835)
Q Consensus 413 EaHr~g~~-----~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~ 461 (835)
|||++... ....+..++.+.+++++|||++..........+.++..+..
T Consensus 158 Eah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 158 EADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred CchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 99986421 22334455668899999999988887778878877766644
No 71
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.89 E-value=6.3e-23 Score=222.46 Aligned_cols=181 Identities=21% Similarity=0.178 Sum_probs=143.4
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC---CCEEEEEcccHHHHHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLAKQ 346 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~---g~qvlVLvPtr~LA~Q 346 (835)
+.+.+...++..|||+|.+||+.++. ..++|+++++|||||||++|++|++..+.. +.+++|++||++||.|
T Consensus 103 l~~~l~~~g~~~pt~iQ~~ai~~il~-----~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q 177 (300)
T 3fmo_B 103 LLQGVYAMGFNRPSKIQENALPLMLA-----EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQ 177 (300)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHTS-----SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHc-----CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHH
Confidence 66777777777999999999999864 235899999999999999999999988754 4589999999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc------ccccCCccEEEEcCccccch-
Q 003260 347 HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVVDEEQRFGV- 419 (835)
Q Consensus 347 ~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~------~l~~~~l~llVIDEaHr~g~- 419 (835)
+++.+......++++.+.++.++...... ....++|+||||+.|.+ .+.+.++++|||||||++..
T Consensus 178 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~ 250 (300)
T 3fmo_B 178 TGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIAT 250 (300)
T ss_dssp HHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHS
T ss_pred HHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhc
Confidence 99999875444567888888887543221 13458999999998853 34578999999999998642
Q ss_pred ---h-h-HHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCC
Q 003260 420 ---K-Q-KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTP 462 (835)
Q Consensus 420 ---~-~-~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~ 462 (835)
. . ...+..+..+.|++++|||++.....++...+.++..|...
T Consensus 251 ~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 251 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp TTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred cCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 1 1 22234456789999999999999999999888888777553
No 72
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.89 E-value=1.5e-22 Score=208.45 Aligned_cols=184 Identities=24% Similarity=0.175 Sum_probs=137.4
Q ss_pred CCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc---CCCEEEEEcccH
Q 003260 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPTI 341 (835)
Q Consensus 266 ~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~---~g~qvlVLvPtr 341 (835)
+.++ +.+.+.+.+...|+|+|.+|++.+++ ++++++++|||+|||++|+++++..+. .+.+++|++||+
T Consensus 20 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (224)
T 1qde_A 20 ELDENLLRGVFGYGFEEPSAIQQRAIMPIIE-------GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 92 (224)
T ss_dssp TCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc-------CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCH
Confidence 3444 67777777777999999999999874 368999999999999999999988764 356899999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEcCccc
Q 003260 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQR 416 (835)
Q Consensus 342 ~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVIDEaHr 416 (835)
+|+.|+++.+... ....++++..++|+.+..+....+ ..++|+|+||+.|.+ ...+.++++||+||||+
T Consensus 93 ~L~~q~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~ 166 (224)
T 1qde_A 93 ELALQIQKVVMAL-AFHMDIKVHACIGGTSFVEDAEGL-----RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 166 (224)
T ss_dssp HHHHHHHHHHHHH-TTTSCCCEEEECC----------C-----TTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHH-hcccCceEEEEeCCcchHHHHhcC-----CCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhH
Confidence 9999999999874 444478899998876554433222 238999999998753 34567899999999998
Q ss_pred cchh-----hHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecCC
Q 003260 417 FGVK-----QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTP 462 (835)
Q Consensus 417 ~g~~-----~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~ 462 (835)
+... ....+..+..+.+++++|||+++....+....+.++..+...
T Consensus 167 ~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 167 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred HhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 6321 223344456788999999999998888888888777766554
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.89 E-value=5.7e-23 Score=214.90 Aligned_cols=182 Identities=18% Similarity=0.139 Sum_probs=138.8
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc----CCCEEEEEcccHHHHH
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS----AGKQAMVLAPTIVLAK 345 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~----~g~qvlVLvPtr~LA~ 345 (835)
+.+.+.+.+...|||+|.+|++.+++ ++|+++++|||||||++|+++++..+. .+.+++|++||++|+.
T Consensus 40 l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~ 112 (245)
T 3dkp_A 40 LLQNILDAGFQMPTPIQMQAIPVMLH-------GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELAS 112 (245)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHH
Confidence 66777777666899999999999874 468999999999999999999998875 3568999999999999
Q ss_pred HHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-------ccccCCccEEEEcCccccc
Q 003260 346 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-------RVVYNNLGLLVVDEEQRFG 418 (835)
Q Consensus 346 Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-------~l~~~~l~llVIDEaHr~g 418 (835)
|+++++.+.+... ++++..++++.... ..+.....+.++|+|+||+.|.. ...+.++++|||||||++.
T Consensus 113 q~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~ 188 (245)
T 3dkp_A 113 QIHRELIKISEGT-GFRIHMIHKAAVAA---KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLF 188 (245)
T ss_dssp HHHHHHHHHTTTS-CCCEECCCHHHHHH---TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHH
T ss_pred HHHHHHHHHhccc-CceEEEEecCccHH---HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhc
Confidence 9999999855443 67887777642221 12223334568999999998853 2457789999999999874
Q ss_pred h----hhHHHH----hhh-cCCceEEEeecCCChhhHHHHHhcCCCcceecCC
Q 003260 419 V----KQKEKI----ASF-KISVDVLTLSATPIPRTLYLALTGFRDASLISTP 462 (835)
Q Consensus 419 ~----~~~e~l----~~l-~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~ 462 (835)
. .....+ ... ..+.++++||||+++.........+.++..+...
T Consensus 189 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~ 241 (245)
T 3dkp_A 189 EDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIG 241 (245)
T ss_dssp HHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEEC
T ss_pred ccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeC
Confidence 3 122222 222 3578999999999888888888888777766654
No 74
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.89 E-value=3.2e-22 Score=203.04 Aligned_cols=182 Identities=21% Similarity=0.162 Sum_probs=141.3
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc------CCCEEEEE
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS------AGKQAMVL 337 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~------~g~qvlVL 337 (835)
++.++ +.+.+.+.+...|+|+|.++++.+++ ++++++++|||+|||++|+.+++..+. .+.+++|+
T Consensus 6 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~-------~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil 78 (207)
T 2gxq_A 6 FPLKPEILEALHGRGLTTPTPIQAAALPLALE-------GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVL 78 (207)
T ss_dssp SCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEE
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcC-------CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEE
Confidence 44555 77888887777999999999999874 468999999999999999999988764 46789999
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEc
Q 003260 338 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVD 412 (835)
Q Consensus 338 vPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVID 412 (835)
+||++|+.|+++++...+. ++++..++++.+...... .+..+ ++|+|+||+.+.+ ...+.++++||+|
T Consensus 79 ~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViD 151 (207)
T 2gxq_A 79 TPTRELALQVASELTAVAP---HLKVVAVYGGTGYGKQKE---ALLRG-ADAVVATPGRALDYLRQGVLDLSRVEVAVLD 151 (207)
T ss_dssp CSSHHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHH---HHHHC-CSEEEECHHHHHHHHHHTSSCCTTCSEEEEE
T ss_pred ECCHHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHH---HhhCC-CCEEEECHHHHHHHHHcCCcchhhceEEEEE
Confidence 9999999999999998543 367888888766544332 23334 8999999988753 3457889999999
Q ss_pred Cccccchh-----hHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceec
Q 003260 413 EEQRFGVK-----QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 460 (835)
Q Consensus 413 EaHr~g~~-----~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~ 460 (835)
|||++... ....+..+..+.+++++|||+++....+....+.++..+.
T Consensus 152 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 152 EADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEE
T ss_pred ChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEE
Confidence 99986321 1223344556889999999998887777777777766554
No 75
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.89 E-value=3e-22 Score=211.14 Aligned_cols=185 Identities=18% Similarity=0.080 Sum_probs=143.8
Q ss_pred CCCCh-HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC---CCEEEEEccc
Q 003260 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPT 340 (835)
Q Consensus 265 ~~~~~-l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~---g~qvlVLvPt 340 (835)
++.++ +.+.+...+...|+|+|.+|++.+++ ++|+++++|||||||++|+++++..+.. +.+++|++||
T Consensus 48 l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-------~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Pt 120 (249)
T 3ber_A 48 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQ-------GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPT 120 (249)
T ss_dssp GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSS
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC-------CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCC
Confidence 34455 66777776667999999999999874 4789999999999999999999876533 4679999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc------ccccCCccEEEEcCc
Q 003260 341 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVVDEE 414 (835)
Q Consensus 341 r~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~------~l~~~~l~llVIDEa 414 (835)
++|+.|+++.+....... ++++..++|+.+...... .+. +.++|+|+||+.|.+ .+.+.++++||+|||
T Consensus 121 r~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~---~~~-~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEa 195 (249)
T 3ber_A 121 RELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSL---ALA-KKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEA 195 (249)
T ss_dssp HHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHH---HHH-TCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSH
T ss_pred HHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHH---Hhc-CCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcCh
Confidence 999999999998754443 688999999876654332 223 458999999998853 235678999999999
Q ss_pred cccch-----hhHHHHhhhcCCceEEEeecCCChhhHHHHHhcCCCcceecC
Q 003260 415 QRFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 461 (835)
Q Consensus 415 Hr~g~-----~~~e~l~~l~~~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~ 461 (835)
|++.. .....+..++.+.++++||||+++....++...+.++..+..
T Consensus 196 h~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 196 DRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 98633 123334455668999999999998888888888877766644
No 76
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.88 E-value=1.9e-22 Score=212.19 Aligned_cols=181 Identities=21% Similarity=0.170 Sum_probs=138.4
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC------------CCEEEEE
Q 003260 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA------------GKQAMVL 337 (835)
Q Consensus 270 l~~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~------------g~qvlVL 337 (835)
+.+.+...+...|+|+|.+|++.+++ ++|+++++|||||||++|+++++..+.. +.+++|+
T Consensus 34 l~~~l~~~g~~~~~~~Q~~~i~~i~~-------~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil 106 (253)
T 1wrb_A 34 IRNNILLASYQRPTPIQKNAIPAILE-------HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLIL 106 (253)
T ss_dssp TTTTTTTTTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEE
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEE
Confidence 55566666667899999999999875 4689999999999999999999877642 3589999
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc-----ccccCCccEEEEc
Q 003260 338 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVD 412 (835)
Q Consensus 338 vPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~-----~l~~~~l~llVID 412 (835)
+||++|+.|+++++... ....++++..++|+.+..... ..+. ..++|+|+||+.|.+ ...+.++++||+|
T Consensus 107 ~Pt~~L~~q~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~---~~~~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViD 181 (253)
T 1wrb_A 107 APTRELAIQILSESQKF-SLNTPLRSCVVYGGADTHSQI---REVQ-MGCHLLVATPGRLVDFIEKNKISLEFCKYIVLD 181 (253)
T ss_dssp CSSHHHHHHHHHHHHHH-HTTSSCCEEEECSSSCSHHHH---HHHS-SCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEE
T ss_pred ECCHHHHHHHHHHHHHH-hccCCceEEEEECCCCHHHHH---HHhC-CCCCEEEECHHHHHHHHHcCCCChhhCCEEEEe
Confidence 99999999999999874 444468888888877655432 3333 348999999998864 2456889999999
Q ss_pred Cccccch----hhHHH-Hhh--hcC--CceEEEeecCCChhhHHHHHhcCCCcceecCC
Q 003260 413 EEQRFGV----KQKEK-IAS--FKI--SVDVLTLSATPIPRTLYLALTGFRDASLISTP 462 (835)
Q Consensus 413 EaHr~g~----~~~e~-l~~--l~~--~~~vL~lSATp~p~tl~~~~~g~~d~s~I~~~ 462 (835)
|||++.. ..... +.. ... +.+++++|||+++....++...+.++..+...
T Consensus 182 Eah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 240 (253)
T 1wrb_A 182 EADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 240 (253)
T ss_dssp THHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred CHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEEC
Confidence 9998632 22223 332 222 67899999999988888888777777666543
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.83 E-value=4.8e-20 Score=181.64 Aligned_cols=110 Identities=21% Similarity=0.314 Sum_probs=104.9
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEec
Q 003260 491 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570 (835)
Q Consensus 491 ~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d 570 (835)
.+++++|||+++..++.+++.|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDL--GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYD 111 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeC
Confidence 4679999999999999999999988 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 571 ~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
.|. +..+|.||+||+||.|+.|.|++|+++.+
T Consensus 112 ~p~-~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 143 (163)
T 2hjv_A 112 LPL-EKESYVHRTGRTGRAGNKGKAISFVTAFE 143 (163)
T ss_dssp CCS-SHHHHHHHTTTSSCTTCCEEEEEEECGGG
T ss_pred CCC-CHHHHHHhccccCcCCCCceEEEEecHHH
Confidence 995 99999999999999999999999998653
No 78
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.82 E-value=3.8e-20 Score=190.61 Aligned_cols=111 Identities=21% Similarity=0.339 Sum_probs=104.0
Q ss_pred hcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEe
Q 003260 490 DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569 (835)
Q Consensus 490 ~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~ 569 (835)
..+++++|||+++..++.+++.|... ++.+..+||+|++.+|+.+++.|++|+++|||||+++++|+|+|++++||++
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~ 106 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHY 106 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHH--TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEES
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEEC
Confidence 35789999999999999999999998 8899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 570 d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+.|. +..+|.||+||+||.|+.|.|++|+++.+
T Consensus 107 ~~p~-~~~~~~qr~GR~gR~g~~g~~~~l~~~~~ 139 (212)
T 3eaq_A 107 RLPD-RAEAYQHRSGRTGRAGRGGRVVLLYGPRE 139 (212)
T ss_dssp SCCS-SHHHHHHHHTTBCCCC--BEEEEEECGGG
T ss_pred CCCc-CHHHHHHHhcccCCCCCCCeEEEEEchhH
Confidence 9996 99999999999999999999999998753
No 79
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=184.58 Aligned_cols=131 Identities=18% Similarity=0.299 Sum_probs=111.5
Q ss_pred eeEEecccCHHHHHHHHHHHHh-cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeE
Q 003260 469 IKTHLSAFSKEKVISAIKYELD-RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKI 547 (835)
Q Consensus 469 v~~~~~~~~~~~l~~~i~~~l~-~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~I 547 (835)
+...+...........+.+.+. .+++++|||+++..++.+++.|... ++.+..+||+|++.+|+.+++.|++|+.+|
T Consensus 30 i~q~~~~~~~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~~~v 107 (191)
T 2p6n_A 30 VIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLK--GVEAVAIHGGKDQEERTKAIEAFREGKKDV 107 (191)
T ss_dssp SEEEEEECCGGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHHTSCSE
T ss_pred ceEEEEEcChHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCEE
Confidence 3343333333444555555554 3678999999999999999999988 889999999999999999999999999999
Q ss_pred EEEcCcCCcCCCCCCccEEEEecCCCCChhHHHHHhcccCCCCCceEEEEEecCC
Q 003260 548 LICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 548 LVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
||||+++++|+|+|++++||+++.|. +..+|.||+||+||.|+.|.|++|+++.
T Consensus 108 LvaT~~~~~Gldi~~v~~VI~~d~p~-~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 108 LVATDVASKGLDFPAIQHVINYDMPE-EIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp EEECHHHHTTCCCCCCSEEEESSCCS-SHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred EEEcCchhcCCCcccCCEEEEeCCCC-CHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 99999999999999999999999995 9999999999999999999999999875
No 80
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=9.3e-20 Score=181.59 Aligned_cols=120 Identities=19% Similarity=0.266 Sum_probs=106.2
Q ss_pred HHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCC
Q 003260 481 VISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558 (835)
Q Consensus 481 l~~~i~~~l~--~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GI 558 (835)
....+...+. .+++++|||+++..++.++..|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+
T Consensus 21 K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gi 98 (175)
T 2rb4_A 21 KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGI 98 (175)
T ss_dssp HHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTT
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCC
Confidence 5555655554 3579999999999999999999987 88999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecCC------CCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 559 DIQNANTIIVQDVQ------QFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 559 DIp~v~~VIi~d~p------~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|+|++++||+++.| . +..+|.||+||+||.|+.|.|++|+++.+
T Consensus 99 d~~~~~~Vi~~d~p~~~~~~~-~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 148 (175)
T 2rb4_A 99 DVKQVTIVVNFDLPVKQGEEP-DYETYLHRIGRTGRFGKKGLAFNMIEVDE 148 (175)
T ss_dssp CCTTEEEEEESSCCC--CCSC-CHHHHHHHHCBC----CCEEEEEEECGGG
T ss_pred CcccCCEEEEeCCCCCccccC-CHHHHHHHhcccccCCCCceEEEEEccch
Confidence 99999999999999 5 89999999999999999999999998764
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.81 E-value=1.3e-19 Score=180.46 Aligned_cols=109 Identities=18% Similarity=0.227 Sum_probs=104.2
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEec
Q 003260 491 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570 (835)
Q Consensus 491 ~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d 570 (835)
.+++++|||+++..++.+++.|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d 107 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 107 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEEC
Confidence 4579999999999999999999988 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhcccCCCCCceEEEEEecCC
Q 003260 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 571 ~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
.|. +..+|.||+||+||.|+.|.|++|+++.
T Consensus 108 ~p~-~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 108 MPE-DSDTYLHRVARAGRFGTKGLAITFVSDE 138 (172)
T ss_dssp CCS-SHHHHHHHHHHHTGGGCCCEEEEEECSH
T ss_pred CCC-CHHHHHHHhcccccCCCCcEEEEEEcCh
Confidence 996 9999999999999999999999999764
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.81 E-value=9.2e-20 Score=179.88 Aligned_cols=110 Identities=20% Similarity=0.298 Sum_probs=100.3
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEec
Q 003260 491 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570 (835)
Q Consensus 491 ~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d 570 (835)
.+++++|||++++.++.++..|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYD 106 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeC
Confidence 4689999999999999999999987 78999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 571 ~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
.|. +..+|.||+||+||.|+.|.|++++++.+
T Consensus 107 ~p~-~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 138 (165)
T 1fuk_A 107 LPA-NKENYIHRIGRGGRFGRKGVAINFVTNED 138 (165)
T ss_dssp CCS-SGGGGGGSSCSCC-----CEEEEEEETTT
T ss_pred CCC-CHHHHHHHhcccccCCCCceEEEEEcchH
Confidence 995 99999999999999999999999998764
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=181.71 Aligned_cols=111 Identities=26% Similarity=0.462 Sum_probs=92.0
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEec
Q 003260 491 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570 (835)
Q Consensus 491 ~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d 570 (835)
.+++++|||+++..++.+++.|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d 122 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFD 122 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT--TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc--CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeC
Confidence 4689999999999999999999987 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003260 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 571 ~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
.|. +..+|.||+||+||.|+.|.|++|+++.+.
T Consensus 123 ~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 155 (185)
T 2jgn_A 123 LPS-DIEEYVHRIGRTGRVGNLGLATSFFNERNI 155 (185)
T ss_dssp CCS-SHHHHHHHHTTBCCTTSCEEEEEEECGGGG
T ss_pred CCC-CHHHHHHHccccCCCCCCcEEEEEEchhhH
Confidence 995 999999999999999999999999987654
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.80 E-value=1.8e-19 Score=195.41 Aligned_cols=110 Identities=22% Similarity=0.348 Sum_probs=100.9
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEec
Q 003260 491 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570 (835)
Q Consensus 491 ~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d 570 (835)
.+++++|||++++.++.+++.|... ++.+..+||+|++.+|+.+++.|++|+++|||||+++++|+|+|++++||+++
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d 104 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYR 104 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTT--TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcC
Confidence 3789999999999999999999887 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 571 ~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
.|. +..+|.||+||+||.|+.|.||+|+++.+
T Consensus 105 ~p~-s~~~y~Qr~GRagR~g~~G~~i~l~~~~e 136 (300)
T 3i32_A 105 MPD-RAEAYQHRSGRTGRAGRGGRVVLLYGPRE 136 (300)
T ss_dssp CCS-STTHHHHHHTCCC-----CEEEEEECSST
T ss_pred CCC-CHHHHHHHccCcCcCCCCceEEEEeChHH
Confidence 996 99999999999999999999999998774
No 85
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.80 E-value=1.9e-19 Score=210.45 Aligned_cols=291 Identities=15% Similarity=0.139 Sum_probs=167.0
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003260 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 279 ~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~ 358 (835)
+|+|+|.|.+++..+.+.+.+ ++++++.+|||+|||++|+.|++.. +.+++|++||++|+.|+++.+.. +
T Consensus 5 ~~~~r~~Q~~~~~~v~~~~~~---~~~~~~~a~TGtGKT~~~l~~~~~~---~~~~~~~~~t~~l~~q~~~~~~~-l--- 74 (540)
T 2vl7_A 5 KLQLRQWQAEKLGEAINALKH---GKTLLLNAKPGLGKTVFVEVLGMQL---KKKVLIFTRTHSQLDSIYKNAKL-L--- 74 (540)
T ss_dssp ----CCHHHHHHHHHHHHHHT---TCEEEEECCTTSCHHHHHHHHHHHH---TCEEEEEESCHHHHHHHHHHHGG-G---
T ss_pred CCCCCHHHHHHHHHHHHHHHc---CCCEEEEcCCCCcHHHHHHHHHHhC---CCcEEEEcCCHHHHHHHHHHHHh-c---
Confidence 468999999999988876643 5799999999999999999998754 78999999999999999988865 3
Q ss_pred CCcEEEEecCCCCHH-------H----------------------HHHHHHhh--------------hcCCcceeeccHH
Q 003260 359 PDIKVGLLSRFQSKA-------E----------------------KEEHLDMI--------------KHGHLNIIVGTHS 395 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~-------e----------------------~~~~l~~l--------------~~G~~dIIVgT~~ 395 (835)
++++..+.|..... . ....|..+ ....+||||+||.
T Consensus 75 -~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~ 153 (540)
T 2vl7_A 75 -GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYP 153 (540)
T ss_dssp -TCCEEEC---------------------------------------------------------CTTGGGCSEEEEETH
T ss_pred -CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChH
Confidence 35555555422100 0 00011111 0123799999999
Q ss_pred Hhhccc------------ccCCccEEEEcCccccchh-----------h----HHHHh----------------------
Q 003260 396 LLGSRV------------VYNNLGLLVVDEEQRFGVK-----------Q----KEKIA---------------------- 426 (835)
Q Consensus 396 ~L~~~l------------~~~~l~llVIDEaHr~g~~-----------~----~e~l~---------------------- 426 (835)
.|.+.. .+.+..++||||||++... . ...+.
T Consensus 154 ~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~ 233 (540)
T 2vl7_A 154 YLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYINLLID 233 (540)
T ss_dssp HHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 887532 1346688999999975110 0 00000
Q ss_pred -----------------------------hh---------------------------------------cC--------
Q 003260 427 -----------------------------SF---------------------------------------KI-------- 430 (835)
Q Consensus 427 -----------------------------~l---------------------------------------~~-------- 430 (835)
.. .+
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~~~l~ 313 (540)
T 2vl7_A 234 YMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVNQLIE 313 (540)
T ss_dssp HHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHHHHHH
T ss_pred HHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHHHHHH
Confidence 00 00
Q ss_pred -Cce----EEEeecCCChh-----hHHHHHhcCCCcceecCCCCCccceeE---EecccCH-----HHHHHHHHHHHh-c
Q 003260 431 -SVD----VLTLSATPIPR-----TLYLALTGFRDASLISTPPPERLPIKT---HLSAFSK-----EKVISAIKYELD-R 491 (835)
Q Consensus 431 -~~~----vL~lSATp~p~-----tl~~~~~g~~d~s~I~~~p~~r~~v~~---~~~~~~~-----~~l~~~i~~~l~-~ 491 (835)
... +|++|||..|. .+ ...+ ..+ -+...+.. .-..++. +.+.+.+.+.+. .
T Consensus 314 ~~~~~~~~~IltSATL~p~~~~~~~f---~~~~------~~~-~g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~~~~~~ 383 (540)
T 2vl7_A 314 DALNVKTFKVLMSGTLPESLTLTNSY---KIVV------NES-YGRGEYYYCPNVTSELRKRNSNIPIYSILLKRIYENS 383 (540)
T ss_dssp HHTCCSSCEEEEESSCCTTCCCTTEE---EEEC------CCC--CCCEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHTC
T ss_pred HhcCccCCeEEEcccCCCCcccchhc---CCch------hhe-ecCCcceeccccCCCcccccCHHHHHHHHHHHHHHhC
Confidence 011 37778887761 11 0000 000 00000000 0011111 345555555543 4
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEE--EcCcCCcCCCCCC----ccE
Q 003260 492 GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILI--CTNIVESGLDIQN----ANT 565 (835)
Q Consensus 492 ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILV--aT~iie~GIDIp~----v~~ 565 (835)
++.++||+++...++.+++.|.. .. ...+|.. ..++++++.|+++. .||+ ||..+.+|||+|+ +++
T Consensus 384 ~g~~lvff~S~~~~~~v~~~l~~----~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~ 455 (540)
T 2vl7_A 384 SKSVLVFFPSYEMLESVRIHLSG----IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFES 455 (540)
T ss_dssp SSEEEEEESCHHHHHHHHTTCTT----SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHhcc----Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccE
Confidence 67999999999988888877654 33 3556664 46889999998864 5666 8899999999997 899
Q ss_pred EEEecCCCCCh-----------------------------hHHHHHhcccCCCC-CceEEEEE
Q 003260 566 IIVQDVQQFGL-----------------------------AQLYQLRGRVGRAD-KEAHAYLF 598 (835)
Q Consensus 566 VIi~d~p~~sl-----------------------------~~l~Qr~GRaGR~g-~~G~ay~l 598 (835)
||+.+.|--++ ..+.|.+||+-|.. ..|..+++
T Consensus 456 Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~ll 518 (540)
T 2vl7_A 456 LVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLC 518 (540)
T ss_dssp EEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEE
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEE
Confidence 99999873222 23459999999974 44654443
No 86
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.79 E-value=3.1e-19 Score=191.00 Aligned_cols=150 Identities=16% Similarity=0.169 Sum_probs=118.1
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCC-CEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g-~qvlVLvPtr~LA~Q~~~~~~~~f~~~ 358 (835)
++|+|+|.+|++.++++ .+.++++|||+|||.+++.++...+..+ .+++|++||++|+.|+++++.+ +...
T Consensus 112 ~~l~~~Q~~ai~~~l~~-------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~-~~~~ 183 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVD-YRLF 183 (282)
T ss_dssp CCCCHHHHHHHHHHHHH-------SEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHH-HTSC
T ss_pred cCccHHHHHHHHHHHhc-------CCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH-hccc
Confidence 58999999999988762 4578999999999999988887766544 4999999999999999999987 5555
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc--cccCCccEEEEcCccccchhhHHHH-hhhcCCceEE
Q 003260 359 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR--VVYNNLGLLVVDEEQRFGVKQKEKI-ASFKISVDVL 435 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~--l~~~~l~llVIDEaHr~g~~~~e~l-~~l~~~~~vL 435 (835)
++..+..+.++..... ...+..+|+|+|++.+.+. ..+.++++||+||||++.......+ ..+....+++
T Consensus 184 ~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~~~~~~il~~~~~~~~~l 256 (282)
T 1rif_A 184 SHAMIKKIGGGASKDD-------KYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKF 256 (282)
T ss_dssp CGGGEEECSTTCSSTT-------CCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCHHHHHHHTTTCTTCCEEE
T ss_pred ccceEEEEeCCCcchh-------hhccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCCcccHHHHHHHhhcCCeEE
Confidence 5567777777654321 1124589999999998765 3467899999999999976655444 4455789999
Q ss_pred EeecCCChh
Q 003260 436 TLSATPIPR 444 (835)
Q Consensus 436 ~lSATp~p~ 444 (835)
+|||||...
T Consensus 257 ~lSATp~~~ 265 (282)
T 1rif_A 257 GLSGSLRDG 265 (282)
T ss_dssp EECSSCCTT
T ss_pred EEeCCCCCc
Confidence 999999543
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.77 E-value=6e-19 Score=179.42 Aligned_cols=151 Identities=21% Similarity=0.199 Sum_probs=105.6
Q ss_pred hCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC------CCEEEEEcccHHHHHH-HHH
Q 003260 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA------GKQAMVLAPTIVLAKQ-HFD 349 (835)
Q Consensus 277 ~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~------g~qvlVLvPtr~LA~Q-~~~ 349 (835)
...+.|+|+|.++++.+++ +.++++++|||+|||++++.++...+.. +.+++|++|+++|+.| +.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~-------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~ 101 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALE-------GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRK 101 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHT-------TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHhc-------CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHH
Confidence 3457999999999998874 3689999999999999999888766532 6789999999999999 667
Q ss_pred HHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcc-----------cccCCccEEEEcCccccc
Q 003260 350 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----------VVYNNLGLLVVDEEQRFG 418 (835)
Q Consensus 350 ~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~-----------l~~~~l~llVIDEaHr~g 418 (835)
.+.. +... ++++..++++....... ..+. ..++|+|+||+.|... ..+.++++|||||||++.
T Consensus 102 ~~~~-~~~~-~~~v~~~~g~~~~~~~~---~~~~-~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~ 175 (216)
T 3b6e_A 102 EFQP-FLKK-WYRVIGLSGDTQLKISF---PEVV-KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTN 175 (216)
T ss_dssp THHH-HHTT-TSCEEECCC---CCCCH---HHHH-HHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC----
T ss_pred HHHH-Hhcc-CceEEEEeCCcccchhH---Hhhc-cCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhc
Confidence 7776 4433 57888888865433211 1112 2489999999988532 446789999999999974
Q ss_pred hh-hHHHH-hhh---c--------------CCceEEEeecC
Q 003260 419 VK-QKEKI-ASF---K--------------ISVDVLTLSAT 440 (835)
Q Consensus 419 ~~-~~e~l-~~l---~--------------~~~~vL~lSAT 440 (835)
.. ....+ ..+ . +..++|+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 176 KEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred cCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 32 11111 111 1 57899999998
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.77 E-value=3.2e-18 Score=178.55 Aligned_cols=158 Identities=18% Similarity=0.163 Sum_probs=117.7
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHH-cCC----CEEEEEcccHHHHHH
Q 003260 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAG----KQAMVLAPTIVLAKQ 346 (835)
Q Consensus 272 ~~~~~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l-~~g----~qvlVLvPtr~LA~Q 346 (835)
.-+.....+.++++|.++++.+.+ +.+++++|+||||||+++..+++... ..+ .++++++|+++|+.|
T Consensus 52 ~~~~~~~~~p~~~~q~~~i~~i~~-------g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q 124 (235)
T 3llm_A 52 AILQERELLPVKKFESEILEAISQ-------NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVS 124 (235)
T ss_dssp HHHHHHHTSGGGGGHHHHHHHHHH-------CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHH
T ss_pred HHHHHHhcCChHHHHHHHHHHHhc-------CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHH
Confidence 334445566789999999999875 47899999999999998877776543 222 389999999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc--ccCCccEEEEcCccccchh----
Q 003260 347 HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV--VYNNLGLLVVDEEQRFGVK---- 420 (835)
Q Consensus 347 ~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l--~~~~l~llVIDEaHr~g~~---- 420 (835)
+++++...++...+..++...+... ......++|+|+||+.|.+.+ .+.++++|||||+|+++..
T Consensus 125 ~~~~~~~~~~~~~~~~~g~~~~~~~---------~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~~lVlDEah~~~~~~~~~ 195 (235)
T 3llm_A 125 VAERVAFERGEEPGKSCGYSVRFES---------ILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFL 195 (235)
T ss_dssp HHHHHHHTTTCCTTSSEEEEETTEE---------ECCCSSSEEEEEEHHHHHHHHHHCCTTCCEEEECCTTSCCHHHHHH
T ss_pred HHHHHHHHhccccCceEEEeechhh---------ccCCCCCeEEEECHHHHHHHHHhhhcCCcEEEEECCccCCcchHHH
Confidence 9999988776555666665544321 111245889999998886543 4789999999999986332
Q ss_pred --hHHHHhhhcCCceEEEeecCCChhh
Q 003260 421 --QKEKIASFKISVDVLTLSATPIPRT 445 (835)
Q Consensus 421 --~~e~l~~l~~~~~vL~lSATp~p~t 445 (835)
..+.+....++.++++||||+....
T Consensus 196 ~~~l~~i~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 196 LVVLRDVVQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHHHHCTTSEEEEEECSSCCHH
T ss_pred HHHHHHHHhhCCCCeEEEEecCCCHHH
Confidence 2233444456889999999997766
No 89
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.62 E-value=4.5e-20 Score=183.16 Aligned_cols=110 Identities=16% Similarity=0.367 Sum_probs=104.4
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCCCCCccEEEEec
Q 003260 491 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570 (835)
Q Consensus 491 ~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GIDIp~v~~VIi~d 570 (835)
.+++++|||+++..++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~ 106 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA--GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFD 106 (170)
Confidence 4578999999999999999999987 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhcccCCCCCceEEEEEecCCC
Q 003260 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 571 ~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
.|. +..+|.||+||+||.|+.|.|++++++.+
T Consensus 107 ~p~-~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 138 (170)
T 2yjt_D 107 MPR-SGDTYLHRIGRTARAGRKGTAISLVEAHD 138 (170)
Confidence 995 99999999999999999999999998764
No 90
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.76 E-value=2.7e-18 Score=179.80 Aligned_cols=140 Identities=25% Similarity=0.179 Sum_probs=113.5
Q ss_pred hCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003260 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 277 ~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
.+.++|+|+|.+|++.+++ ..++++++|||+|||.+++.++... +.+++|++|+++|+.|+++++.+ |
T Consensus 89 ~~~~~l~~~Q~~ai~~~~~-------~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~-~- 156 (237)
T 2fz4_A 89 DAEISLRDYQEKALERWLV-------DKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-F- 156 (237)
T ss_dssp CCCCCCCHHHHHHHHHHTT-------TSEEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGG-G-
T ss_pred cCCCCcCHHHHHHHHHHHh-------CCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh-C-
Confidence 3567999999999998764 2469999999999999998877654 78899999999999999999987 5
Q ss_pred CCCCcE-EEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccccc--CCccEEEEcCccccchhhHHHHhhhcCCce
Q 003260 357 KYPDIK-VGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVY--NNLGLLVVDEEQRFGVKQKEKIASFKISVD 433 (835)
Q Consensus 357 ~~~gi~-V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~--~~l~llVIDEaHr~g~~~~e~l~~l~~~~~ 433 (835)
+++ +..++++.. ...+|+|+|++.+...... .++++|||||+|++.......+.......+
T Consensus 157 ---~~~~v~~~~g~~~-------------~~~~i~v~T~~~l~~~~~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~~~~ 220 (237)
T 2fz4_A 157 ---GEEYVGEFSGRIK-------------ELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPF 220 (237)
T ss_dssp ---CGGGEEEESSSCB-------------CCCSEEEEEHHHHHHTHHHHTTTCSEEEEECSSCCCTTTHHHHHHTCCCSE
T ss_pred ---CCCeEEEEeCCCC-------------CcCCEEEEeHHHHHhhHHHhcccCCEEEEECCccCCChHHHHHHHhccCCE
Confidence 577 888888643 2478999999988754332 568999999999998776666766667789
Q ss_pred EEEeecCCChh
Q 003260 434 VLTLSATPIPR 444 (835)
Q Consensus 434 vL~lSATp~p~ 444 (835)
+|+|||||...
T Consensus 221 ~l~LSATp~r~ 231 (237)
T 2fz4_A 221 RLGLTATFERE 231 (237)
T ss_dssp EEEEEESCC--
T ss_pred EEEEecCCCCC
Confidence 99999999643
No 91
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=99.74 E-value=2.1e-17 Score=164.50 Aligned_cols=147 Identities=10% Similarity=0.171 Sum_probs=115.1
Q ss_pred ceEEeeecCCCCccccccccCCchHHHHHHHhhhhcCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhcCccEE
Q 003260 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 760 (835)
Q Consensus 681 ~~~~~l~idp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~dr~G~~p~~~~~l~~~~~~~~~~~~~g~~~i 760 (835)
.+.++++++++||++||++..+|+++|+|++.+. +.++++++.+||.||||++|.+|++||.+++||++|+++||.+|
T Consensus 8 ~~~IdL~v~A~IP~~YI~d~~~RL~lYkria~~~--~~eel~~l~~EL~DRFG~lP~~v~~Ll~v~~lK~~a~~lgI~~I 85 (173)
T 2qsr_A 8 NAELILQIDAYLPDTYISDQRHKIEIYKKIRQID--NRVNYEELQEELIDRFGEYPDVVAYLLEIGLVKSYLDKVFVQRV 85 (173)
T ss_dssp CCEEECCCCCCCCTTTCCCHHHHHHHHHHHHTCC--SHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred CcEEEeCCCccCChhhcCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHCCCcEE
Confidence 6789999999999999999999999999999976 56799999999999999999999999999999999999999999
Q ss_pred EecCcEEEEEecCC--HH-HHHHHHHhhcccccccceeeeCCeeEEEEEec-CCcHHHHHHHHHHHHHHHhhc
Q 003260 761 YASGKMVGMKTNMN--KK-VFKMMIDSMTSEVHRNSLTFEGDQIKAELLLE-LPREQLLNWIFQCLAELYASL 829 (835)
Q Consensus 761 ~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 829 (835)
...++.+.+.+..+ .. -...+...+...+.+..+...++.+.+.+... .+...+++.+..+|..+.+..
T Consensus 86 ~~~~~~i~i~f~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~l~i~~~~~~~~~~~~l~~~~~lL~~L~~~~ 158 (173)
T 2qsr_A 86 ERKDNKITIQFEKVTQRLFLAQDYFKALSVTNLKAGIAENKGLMELVFDVQNKKDYEILEGLLIFGESLLEIK 158 (173)
T ss_dssp EECSSEEEEEECTTHHHHCCHHHHHHHHTTSSSEEEEEEETTEEEEEEECTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCEEEEEEccCcccccCHHHHHHHHHhcCccEEecCCCccEEEEEecCcccHHHHHHHHHHHHHHHHHHh
Confidence 99999988887533 11 12234444544444444443344555544333 245567999999998886543
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.71 E-value=1.8e-15 Score=177.14 Aligned_cols=277 Identities=11% Similarity=0.079 Sum_probs=177.5
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCC
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP 359 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~ 359 (835)
|+++|.|.+++..+.+.+.+ ++++++.+|||+|||++|+.|++. .+.+++|++||++|+.|+.+++.. +....
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~---~~~~~~~a~TGtGKT~~~l~p~l~---~~~~v~i~~pt~~l~~q~~~~~~~-l~~~~ 74 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRN---NFLVALNAPTGSGKTLFSLLVSLE---VKPKVLFVVRTHNEFYPIYRDLTK-IREKR 74 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHT---TCEEEEECCTTSSHHHHHHHHHHH---HCSEEEEEESSGGGHHHHHHHHTT-CCCSS
T ss_pred CCCCHHHHHHHHHHHHHHHc---CCcEEEECCCCccHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHHHHHH-Hhhhc
Confidence 68999999999998877643 579999999999999999999987 478999999999999999988875 55444
Q ss_pred CcEEEEecCCCCHH------------------------------HHHHHH------------------HhhhcCCcceee
Q 003260 360 DIKVGLLSRFQSKA------------------------------EKEEHL------------------DMIKHGHLNIIV 391 (835)
Q Consensus 360 gi~V~~l~g~~s~~------------------------------e~~~~l------------------~~l~~G~~dIIV 391 (835)
++++..+.|..... .....+ +... ..+||||
T Consensus 75 ~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~-~~adIVV 153 (551)
T 3crv_A 75 NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL-YKADVIA 153 (551)
T ss_dssp CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG-GGCSEEE
T ss_pred CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh-hcCCEEE
Confidence 68888777632100 001111 1112 2489999
Q ss_pred ccHHHhhccc-----cc-CCccEEEEcCccccch-----------hh---------------------------------
Q 003260 392 GTHSLLGSRV-----VY-NNLGLLVVDEEQRFGV-----------KQ--------------------------------- 421 (835)
Q Consensus 392 gT~~~L~~~l-----~~-~~l~llVIDEaHr~g~-----------~~--------------------------------- 421 (835)
+||..|.+.. .+ .+..+|||||||++.. .+
T Consensus 154 ~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~ 233 (551)
T 3crv_A 154 LTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDKVNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEK 233 (551)
T ss_dssp EETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGGGGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSS
T ss_pred eCchHhcCHHHHHhcCCCcCCeEEEEecccchHHHHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999987642 11 3567899999996311 00
Q ss_pred -----------H-------H---------------------HH----h--------------hh--------------cC
Q 003260 422 -----------K-------E---------------------KI----A--------------SF--------------KI 430 (835)
Q Consensus 422 -----------~-------e---------------------~l----~--------------~l--------------~~ 430 (835)
. + .+ . .+ ..
T Consensus 234 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~ 313 (551)
T 3crv_A 234 YIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLND 313 (551)
T ss_dssp CEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGC
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhc
Confidence 0 0 00 0 00 11
Q ss_pred C-ceEEEeecCCChhhHHHHHhcCC-Ccc----eecCCCCCccceeEEec-----ccC------HHHHHHHHHHHHh-cC
Q 003260 431 S-VDVLTLSATPIPRTLYLALTGFR-DAS----LISTPPPERLPIKTHLS-----AFS------KEKVISAIKYELD-RG 492 (835)
Q Consensus 431 ~-~~vL~lSATp~p~tl~~~~~g~~-d~s----~I~~~p~~r~~v~~~~~-----~~~------~~~l~~~i~~~l~-~g 492 (835)
. ..+|++|||..|-.......|+. +.. .+..+.+-......++. .+. .+.+.+.+.+.+. .+
T Consensus 314 ~~~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~~ 393 (551)
T 3crv_A 314 NELSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQAK 393 (551)
T ss_dssp TTCEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHCS
T ss_pred cCceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhCC
Confidence 2 57899999998855555555554 221 11222111111112211 011 1234444444443 46
Q ss_pred CeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEc--CcCCcCCCCC-----CccE
Q 003260 493 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICT--NIVESGLDIQ-----NANT 565 (835)
Q Consensus 493 gqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT--~iie~GIDIp-----~v~~ 565 (835)
|.++||+++....+.+++. .+..+.+-..+++ +..+++.|+....-||+|| ..+.+|||+| .++.
T Consensus 394 g~~lvlF~Sy~~l~~v~~~-----~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~ 465 (551)
T 3crv_A 394 ANVLVVFPSYEIMDRVMSR-----ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISD 465 (551)
T ss_dssp SEEEEEESCHHHHHHHHTT-----CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEE
T ss_pred CCEEEEecCHHHHHHHHHh-----cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeE
Confidence 8999999998888887762 2445544333455 3556777854344799998 6999999999 3788
Q ss_pred EEEecCC
Q 003260 566 IIVQDVQ 572 (835)
Q Consensus 566 VIi~d~p 572 (835)
||+.+.|
T Consensus 466 viI~~lP 472 (551)
T 3crv_A 466 VVIVGIP 472 (551)
T ss_dssp EEEESCC
T ss_pred EEEEcCC
Confidence 9988765
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.61 E-value=3.6e-14 Score=168.22 Aligned_cols=85 Identities=20% Similarity=0.153 Sum_probs=67.9
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc-CCCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~-~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~ 358 (835)
|+|+|.|.+.+..+.+.+.+ +.++++++|||+|||++|+.|++..+. .+.+++|++||++|+.|+.+.+.. +...
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~---~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~-l~~~ 77 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQK---SYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRS-LSST 77 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHH---SSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHH-HHHH
T ss_pred CCCCHHHHHHHHHHHHHHHc---CCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHH-Hhhc
Confidence 68999999999999887743 689999999999999999999987753 478999999999999999999876 3332
Q ss_pred CCcEEEEecC
Q 003260 359 PDIKVGLLSR 368 (835)
Q Consensus 359 ~gi~V~~l~g 368 (835)
.++++..+.|
T Consensus 78 ~~~~~~~l~g 87 (620)
T 4a15_A 78 MKIRAIPMQG 87 (620)
T ss_dssp SCCCEEECCC
T ss_pred cCeEEEEEEC
Confidence 2466666554
No 94
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.54 E-value=1.6e-14 Score=154.33 Aligned_cols=123 Identities=16% Similarity=0.240 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcC-Cee-EEEEcCcCCcC
Q 003260 480 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIK-ILICTNIVESG 557 (835)
Q Consensus 480 ~l~~~i~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g-~~~-ILVaT~iie~G 557 (835)
.+.+.+......+.+++|||+....++.+...|...+ ++.+..+||+++..+|+.+++.|+++ ..+ +|+||+++++|
T Consensus 100 ~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~-g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~G 178 (271)
T 1z5z_A 100 RTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL-NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFG 178 (271)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHH-CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCC
T ss_pred HHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhc-CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCC
Confidence 3445555555678999999999999999999998742 67888999999999999999999998 677 78999999999
Q ss_pred CCCCCccEEEEecCCCCChhHHHHHhcccCCCCCce--EEEEEecCCCc
Q 003260 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEA--HAYLFYPDKSL 604 (835)
Q Consensus 558 IDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G--~ay~l~~~~~~ 604 (835)
+|++++++||++|.| |++..+.|++||++|.|+.+ .+|.+++.+.+
T Consensus 179 lnl~~a~~VI~~d~~-wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 179 INLTSANRVIHFDRW-WNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp CCCTTCSEEEECSCC-SCTTTC--------------CCEEEEEEETTSH
T ss_pred cCcccCCEEEEECCC-CChhHHHHHHHhccccCCCCceEEEEEeeCCCH
Confidence 999999999999999 69999999999999999654 55778887654
No 95
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=99.36 E-value=1.2e-13 Score=116.89 Aligned_cols=69 Identities=29% Similarity=0.515 Sum_probs=30.9
Q ss_pred CCCCCCcccccccccEEEeeEEEeecCCCCCccceEEEEEcCCC-cccChhhHhHHHhhhcCCCCCCchHHHhcc
Q 003260 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGM-AKLPVKQASRMLYRYNLPNETKRPRTLSKL 226 (835)
Q Consensus 153 ~~~~gd~vvh~~~Gig~~~g~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~~~~~~~~~~y~~~~~~~~~~~l~~l 226 (835)
.|++||||||.+||||+|.||+..... +..+||+.|+|++++ .++|++++ ++++||.+.++ ..|+|+||
T Consensus 2 ~l~~GD~VVh~~hGiG~~~gi~~~~v~--g~~~ey~~l~y~~~~~l~VPv~~~-~~i~ry~g~~~--~~p~L~kL 71 (71)
T 3mlq_E 2 PHMPGDYLIHPEHGVGQYLGLETREVL--GVKRDYLVLRYKGEGKLYLPVEQL-PLLKRHPGTTD--DPPELSSL 71 (71)
T ss_dssp --------------CEEEEEEEEEEET--TEEEEEEEEEETTTEEEEEESSSC-C--------------------
T ss_pred cCCCCCEEEECCCeeEEEeEEEEEEeC--CeeEEEEEEEECCCCEEEEEhhhh-cceeeecCCCC--CCCcCCcC
Confidence 478999999999999999999843332 678999999999986 78999997 57999998664 25888876
No 96
>2lqk_A Transcriptional regulator; RNA polymerase interacting domain, transcription regulator; NMR {Thermus thermophilus}
Probab=98.00 E-value=6.3e-09 Score=87.85 Aligned_cols=50 Identities=30% Similarity=0.461 Sum_probs=42.1
Q ss_pred CCCCCCcccccccccEEEeeEEEeecCCCCCccceEEEEEc-CC-CcccChhhH
Q 003260 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DG-MAKLPVKQA 204 (835)
Q Consensus 153 ~~~~gd~vvh~~~Gig~~~g~~~~~~~~~~~~~~~~~~~y~-~~-~~~~~~~~~ 204 (835)
++++||||||.+||||+|.||+.... ++..+||+.|+|+ ++ ..++|++++
T Consensus 6 ~f~~GD~VVy~~hGvg~i~gIe~~~v--~G~~~~y~~l~~~~~~~~l~VPv~~~ 57 (70)
T 2lqk_A 6 EFRPGDKVVLPPYGVGVVAGIAQRSV--SGVSRAYYQVDFPGSRSKAYVPVEAP 57 (70)
Confidence 79999999999999999999984332 2678999999998 44 378999986
No 97
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.38 E-value=1.3e-06 Score=103.25 Aligned_cols=150 Identities=20% Similarity=0.182 Sum_probs=86.7
Q ss_pred HHHHHHHhCCC-CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHH--HHHHHHHHH--cCCCEEEEEcccHHHH
Q 003260 270 AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV--ALRAIFCVV--SAGKQAMVLAPTIVLA 344 (835)
Q Consensus 270 l~~~~~~~f~~-~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~v--al~a~l~~l--~~g~qvlVLvPtr~LA 344 (835)
+...+...|+. ..++.|+.|++.++. +..+++.|++|+|||.+ ++.+++... ..+.++++++||..+|
T Consensus 137 ~~~~l~~~~~~~~~~~~Q~~Ai~~~l~-------~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA 209 (608)
T 1w36_D 137 LAQTLDKLFPVSDEINWQKVAAAVALT-------RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAA 209 (608)
T ss_dssp HHHHHHTTCCCTTSCCHHHHHHHHHHT-------BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHhc-------CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHH
Confidence 44455555542 337999999998863 36899999999999954 566666544 3467999999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeec-cHHH--hh-cccccCCccEEEEcCccccchh
Q 003260 345 KQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG-THSL--LG-SRVVYNNLGLLVVDEEQRFGVK 420 (835)
Q Consensus 345 ~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVg-T~~~--L~-~~l~~~~l~llVIDEaHr~g~~ 420 (835)
.++.+.+....... ++......+. .. + ...++-+++ ++.. +. .......+++|||||++.+...
T Consensus 210 ~~L~e~~~~~~~~l-~l~~~~~~~~-~~-~---------~~Tih~ll~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~~~ 277 (608)
T 1w36_D 210 ARLTESLGKALRQL-PLTDEQKKRI-PE-D---------ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLP 277 (608)
T ss_dssp HHHHHHHTHHHHHS-SCCSCCCCSC-SC-C---------CBTTTSCC-----------CTTSCCSCSEEEECSGGGCBHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHhcc-ch-h---------hhhhHhhhccCCCchHHHhccCCCCCCCEEEEechhhCCHH
Confidence 99888776532222 2211000000 00 0 000111111 1111 11 1111236889999999987765
Q ss_pred hHHH-HhhhcCCceEEEee
Q 003260 421 QKEK-IASFKISVDVLTLS 438 (835)
Q Consensus 421 ~~e~-l~~l~~~~~vL~lS 438 (835)
.... +..++.+.++|++-
T Consensus 278 ~~~~Ll~~l~~~~~liLvG 296 (608)
T 1w36_D 278 MMSRLIDALPDHARVIFLG 296 (608)
T ss_dssp HHHHHHHTCCTTCEEEEEE
T ss_pred HHHHHHHhCCCCCEEEEEc
Confidence 5443 45556667777654
No 98
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.31 E-value=6.1e-05 Score=89.62 Aligned_cols=68 Identities=22% Similarity=0.233 Sum_probs=58.3
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHH
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
..+++.|.+|+..++. . ..-.||+||+|+|||.+....+...+..+.++|+++||...+.++.+++..
T Consensus 188 ~~LN~~Q~~AV~~al~---~---~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALS---Q---KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TTCCHHHHHHHHHHHH---C---SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc---C---CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHh
Confidence 4789999999988774 1 124699999999999998888888888899999999999999999988865
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.10 E-value=2.4e-05 Score=89.21 Aligned_cols=134 Identities=19% Similarity=0.139 Sum_probs=82.1
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCC-EEEEEcccHHHHHHHHHHHHHhhcC
Q 003260 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK-QAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 279 ~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~-qvlVLvPtr~LA~Q~~~~~~~~f~~ 357 (835)
.-.+++.|.+|+..++..+.. .. ..++|.|+.|+|||.+....+......+. .+++++||...|..+.+.+
T Consensus 23 ~~~Ln~~Q~~av~~~~~~i~~-~~-~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~------ 94 (459)
T 3upu_A 23 FDDLTEGQKNAFNIVMKAIKE-KK-HHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS------ 94 (459)
T ss_dssp SSCCCHHHHHHHHHHHHHHHS-SS-CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH------
T ss_pred cccCCHHHHHHHHHHHHHHhc-CC-CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh------
Confidence 347999999999998876643 22 38999999999999886544444445555 7999999998887655443
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHh-hh-cCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhhhcC-CceE
Q 003260 358 YPDIKVGLLSRFQSKAEKEEHLDM-IK-HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKI-SVDV 434 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~-l~-~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l~~-~~~v 434 (835)
+..+..+++. +.. .. .+....+.. .....+..+++|||||+|.+...+...+..... ..++
T Consensus 95 --~~~~~T~h~~---------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~ 158 (459)
T 3upu_A 95 --GKEASTIHSI---------LKINPVTYEENVLFEQ-----KEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPWCTI 158 (459)
T ss_dssp --SSCEEEHHHH---------HTEEEEECSSCEEEEE-----CSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCTTCEE
T ss_pred --ccchhhHHHH---------hccCcccccccchhcc-----cccccccCCCEEEEECchhCCHHHHHHHHHhccCCCEE
Confidence 2333333321 100 00 000000000 112235678999999999988776666655433 3444
Q ss_pred EE
Q 003260 435 LT 436 (835)
Q Consensus 435 L~ 436 (835)
++
T Consensus 159 ~~ 160 (459)
T 3upu_A 159 IG 160 (459)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=3.2e-05 Score=94.18 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=54.1
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc-CCCEEEEEcccHHHHHHHHHHHHH
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~-~g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
..+++.|.+|+..++. ..-.+|.||+|+|||.+....+...+. .+.++++++||...+.++.+++.+
T Consensus 359 ~~Ln~~Q~~Av~~~l~-------~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ-------RPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCCCHHHHHHHHHHTT-------CSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhc-------CCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 3689999999987753 235799999999999886555544433 578999999999999999998876
No 101
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.01 E-value=5.2e-05 Score=89.89 Aligned_cols=67 Identities=21% Similarity=0.215 Sum_probs=54.6
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc-CCCEEEEEcccHHHHHHHHHHHHH
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~-~g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
..+++.|.+|+..++. ..-.+|.||+|+|||.+....+...+. .+.++++++||...+.++.+++.+
T Consensus 179 ~~ln~~Q~~av~~~l~-------~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ-------RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCCHHHHHHHHHHHT-------CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhc-------CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 4689999999988763 235799999999999987655555554 578999999999999999888765
No 102
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.00 E-value=3.8e-05 Score=90.16 Aligned_cols=124 Identities=17% Similarity=0.103 Sum_probs=78.7
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003260 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 279 ~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~ 358 (835)
++.+++.|.+|+..+.. ...++|.|+.|+|||.+....+......+.++++++||...+..+.+..
T Consensus 187 ~~~L~~~Q~~Av~~~~~-------~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~------- 252 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG-------HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVT------- 252 (574)
T ss_dssp TTTCCHHHHHHHHHHTT-------CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH-------
T ss_pred cCCCCHHHHHHHHHHHh-------CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhh-------
Confidence 78899999999988753 3678999999999998754444444457889999999998887765433
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhh-hcCCceEEE
Q 003260 359 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIAS-FKISVDVLT 436 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~-l~~~~~vL~ 436 (835)
+.....+++... ..- + ...........+++|||||++.+.......+.. +....++++
T Consensus 253 -~~~a~Tih~ll~-----------------~~~-~-~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~lil 311 (574)
T 3e1s_A 253 -GRTASTVHRLLG-----------------YGP-Q-GFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLL 311 (574)
T ss_dssp -TSCEEEHHHHTT-----------------EET-T-EESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSCTTCEEEE
T ss_pred -cccHHHHHHHHc-----------------CCc-c-hhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhCcCCCEEEE
Confidence 222333322110 000 0 000011123467899999999998766555543 334445544
No 103
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.98 E-value=0.00014 Score=86.11 Aligned_cols=80 Identities=19% Similarity=0.161 Sum_probs=61.8
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCC----CEEEEEcccHHHHHHHHHHHHHhh
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG----KQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g----~qvlVLvPtr~LA~Q~~~~~~~~f 355 (835)
-.+++.|.+|+.. ....++|.|+.|||||.+.+.-+...+..+ .+++++++|+..+.++.+++.+.+
T Consensus 8 ~~Ln~~Q~~av~~---------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA---------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC---------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC---------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 3689999999741 135689999999999999877666666542 589999999999999999998866
Q ss_pred cCC-CCcEEEEecC
Q 003260 356 SKY-PDIKVGLLSR 368 (835)
Q Consensus 356 ~~~-~gi~V~~l~g 368 (835)
+.. .++.|..+++
T Consensus 79 ~~~~~~~~v~Tfhs 92 (647)
T 3lfu_A 79 GTSQGGMWVGTFHG 92 (647)
T ss_dssp CSCCTTCEEEEHHH
T ss_pred ccccCCcEEEcHHH
Confidence 532 3466766655
No 104
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.88 E-value=0.00011 Score=89.37 Aligned_cols=67 Identities=21% Similarity=0.215 Sum_probs=54.2
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc-CCCEEEEEcccHHHHHHHHHHHHH
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~-~g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
..+++.|.+|+..++. ..-.+|.||+|+|||.+....+...+. .+.++++++||...+.++.+++.+
T Consensus 355 ~~Ln~~Q~~Av~~~l~-------~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ-------RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCCHHHHHHHHHHHT-------SSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhcc-------CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 4789999999988763 235799999999999986655554444 578999999999999998888765
No 105
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.46 E-value=0.0025 Score=76.03 Aligned_cols=80 Identities=18% Similarity=0.207 Sum_probs=61.0
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc----CCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS----AGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~----~g~qvlVLvPtr~LA~Q~~~~~~~~f~ 356 (835)
.++|.|.+|+... ...++|.|..|||||.+...-+...+. ...++++++.|+..|.++.+++...++
T Consensus 2 ~L~~~Q~~av~~~---------~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV---------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC---------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC---------CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 5899999997431 357899999999999997655554443 236899999999999999999988665
Q ss_pred CC--CCcEEEEecCC
Q 003260 357 KY--PDIKVGLLSRF 369 (835)
Q Consensus 357 ~~--~gi~V~~l~g~ 369 (835)
.. .++.|..++++
T Consensus 73 ~~~~~~~~v~Tfhs~ 87 (673)
T 1uaa_A 73 RKEARGLMISTFHTL 87 (673)
T ss_dssp TTTTTTSEEEEHHHH
T ss_pred cccccCCEEEeHHHH
Confidence 42 24777776654
No 106
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.37 E-value=0.00053 Score=70.16 Aligned_cols=108 Identities=20% Similarity=0.224 Sum_probs=61.5
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhh
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l 382 (835)
++=.+++|+.|+|||+.++..+......+.+|+++.|...-- --...+.+++ |+.+..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R-~ge~~i~s~~----g~~~~a----------------- 85 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNR-YSEEDVVSHN----GLKVKA----------------- 85 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC----------------------CCE-----------------
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCc-chHHHHHhhc----CCeeEE-----------------
Confidence 445578999999999999999998888999999999976310 0001111111 111110
Q ss_pred hcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhhhc-CCceEEEeecC
Q 003260 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFK-ISVDVLTLSAT 440 (835)
Q Consensus 383 ~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l~-~~~~vL~lSAT 440 (835)
+.+.....+...+. .++++|+|||+|.|...+.+.+..+. .+..| ++++-
T Consensus 86 ------~~~~~~~~~~~~~~-~~~dvViIDEaQF~~~~~V~~l~~l~~~~~~V-i~~Gl 136 (214)
T 2j9r_A 86 ------VPVSASKDIFKHIT-EEMDVIAIDEVQFFDGDIVEVVQVLANRGYRV-IVAGL 136 (214)
T ss_dssp ------EECSSGGGGGGGCC-SSCCEEEECCGGGSCTTHHHHHHHHHHTTCEE-EEEEC
T ss_pred ------eecCCHHHHHHHHh-cCCCEEEEECcccCCHHHHHHHHHHhhCCCEE-EEEec
Confidence 11111112221111 35899999999999776666666643 34444 45554
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.32 E-value=0.00062 Score=67.90 Aligned_cols=39 Identities=26% Similarity=0.197 Sum_probs=32.7
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 341 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr 341 (835)
++-.++.|++|+|||..++..+......+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 345789999999999998888877777888999999984
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.21 E-value=0.00077 Score=67.82 Aligned_cols=39 Identities=28% Similarity=0.295 Sum_probs=33.9
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 341 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr 341 (835)
++=.+++|++|||||+.++..+......+.+|+++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 456788999999999999988888888899999999974
No 109
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.84 E-value=0.0027 Score=64.92 Aligned_cols=105 Identities=19% Similarity=0.164 Sum_probs=61.2
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
.++=.+++|+.|+|||+.++..+......+.+++++.|...-- .-...+..+. |+..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R-~~~~~I~Sr~----G~~~------------------ 83 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDR-YHKEKVVSHN----GNAI------------------ 83 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC------------CBT----TBCC------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCc-chhhhHHHhc----CCce------------------
Confidence 3566789999999999988888887777889999999975311 0011122211 1111
Q ss_pred hhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhhhc-CCceEE
Q 003260 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFK-ISVDVL 435 (835)
Q Consensus 382 l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l~-~~~~vL 435 (835)
..+.+....-+...+ ..++++|+|||+|-|...+.+.+..+. .+..|+
T Consensus 84 -----~a~~v~~~~di~~~i-~~~~dvV~IDEaQFf~~~~v~~l~~la~~gi~Vi 132 (219)
T 3e2i_A 84 -----EAINISKASEIMTHD-LTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVI 132 (219)
T ss_dssp -----EEEEESSGGGGGGSC-CTTCSEEEECCGGGSCTHHHHHHHHHHHTTCEEE
T ss_pred -----eeEEeCCHHHHHHHH-hcCCCEEEEechhcCCHHHHHHHHHHHHCCCEEE
Confidence 112233333232222 257889999999999866665554442 344444
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.83 E-value=0.00061 Score=70.27 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=34.3
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 341 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr 341 (835)
++.-.++.|++|+|||+.++..+......|.+|+++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 3566788999999999999988888888899999998765
No 111
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.81 E-value=0.0058 Score=66.41 Aligned_cols=46 Identities=13% Similarity=0.037 Sum_probs=35.4
Q ss_pred CCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHH
Q 003260 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 282 ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
+.|+|.+++..+.+.+..+.-+...|+.||.|+|||..+...+-..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 4689999999888877544445568999999999999876555443
No 112
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.64 E-value=0.02 Score=63.67 Aligned_cols=121 Identities=12% Similarity=0.128 Sum_probs=75.6
Q ss_pred CCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHH-HHc-CCCEEEEEcccHHHHHHHHHHHHHhh
Q 003260 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC-VVS-AGKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 278 f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~-~l~-~g~qvlVLvPtr~LA~Q~~~~~~~~f 355 (835)
.++.++|+|...+..+.. .+-++++.+-+.|||.++...++. ++. .+..+++++|+..-|..+++.++..+
T Consensus 160 ~p~~L~p~Qk~il~~l~~-------~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSS-------KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp EECCCCHHHHHHHHHHHH-------SSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhhcc-------CcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 457899999998876531 245899999999999986544443 333 46789999999999998888887765
Q ss_pred cCCCC-cE--EEEecCCCCHHHHHHHHHhhhcCC-cceeeccHHHhhcccccCCccEEEEcCccccc
Q 003260 356 SKYPD-IK--VGLLSRFQSKAEKEEHLDMIKHGH-LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFG 418 (835)
Q Consensus 356 ~~~~g-i~--V~~l~g~~s~~e~~~~l~~l~~G~-~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g 418 (835)
...|. ++ +...... .+ .+.+|. +.++-++++.+.. .+..++|+||+|.+.
T Consensus 233 ~~~P~ll~~~~~~~~~~--------~I-~f~nGs~i~~lsa~~~slrG----~~~~~viiDE~a~~~ 286 (385)
T 2o0j_A 233 ELLPDFLQPGIVEWNKG--------SI-ELDNGSSIGAYASSPDAVRG----NSFAMIYIEDCAFIP 286 (385)
T ss_dssp HHSCTTTSCCEEEECSS--------EE-EETTSCEEEEEECSHHHHHT----SCCSEEEEESGGGST
T ss_pred HhChHhhhhhhccCCcc--------EE-EeCCCCEEEEEECCCCCccC----CCCCEEEechhhhcC
Confidence 54442 11 1111100 00 112231 1222223444432 346899999999875
No 113
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.50 E-value=0.0034 Score=63.23 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=33.2
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEccc
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 340 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPt 340 (835)
++=.++.|++|||||+-.+..+-.....+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 45578899999999998888888888888999999886
No 114
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.40 E-value=0.044 Score=64.34 Aligned_cols=121 Identities=12% Similarity=0.110 Sum_probs=76.8
Q ss_pred CCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHH-HHHHHc-CCCEEEEEcccHHHHHHHHHHHHHhh
Q 003260 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA-IFCVVS-AGKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 278 f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a-~l~~l~-~g~qvlVLvPtr~LA~Q~~~~~~~~f 355 (835)
.++.++|+|...+..+.. .+.+++.++-|+|||.+.... +...+. .+..+++++|+...|..+++.++..+
T Consensus 160 ~~~~l~p~Q~~i~~~l~~-------~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMSS-------KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp BBCCCCHHHHHHHHHHHH-------CSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccCcCCHHHHHHHHhhcc-------ccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 467899999998877621 256899999999999985433 333333 34689999999999999998888777
Q ss_pred cCCCC-cE--EEEecCCCCHHHHHHHHHhhhcCCcceee--ccHHHhhcccccCCccEEEEcCccccch
Q 003260 356 SKYPD-IK--VGLLSRFQSKAEKEEHLDMIKHGHLNIIV--GTHSLLGSRVVYNNLGLLVVDEEQRFGV 419 (835)
Q Consensus 356 ~~~~g-i~--V~~l~g~~s~~e~~~~l~~l~~G~~dIIV--gT~~~L~~~l~~~~l~llVIDEaHr~g~ 419 (835)
...|. +. ....... .+ .+.+| ..|.+ +.+..+.. .+.+++|+||+|.+..
T Consensus 233 ~~~p~~~~~~~~~~~~~--------~i-~~~nG-s~i~~~s~~~~~lrG----~~~~~~iiDE~~~~~~ 287 (592)
T 3cpe_A 233 ELLPDFLQPGIVEWNKG--------SI-ELDNG-SSIGAYASSPDAVRG----NSFAMIYIEDCAFIPN 287 (592)
T ss_dssp TTSCTTTSCCEEEECSS--------EE-EETTS-CEEEEEECCHHHHHH----SCCSEEEEETGGGCTT
T ss_pred HhChHhhccccccCCcc--------EE-EecCC-CEEEEEeCCCCCccC----CCcceEEEehhccCCc
Confidence 66542 11 1101100 00 11233 22322 22444432 2467999999998754
No 115
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=96.29 E-value=0.027 Score=54.29 Aligned_cols=92 Identities=12% Similarity=0.185 Sum_probs=73.7
Q ss_pred CcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeecc
Q 003260 314 FGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 393 (835)
Q Consensus 314 sGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT 393 (835)
..|... +.-++.. ..+.+++|.++++.-+..+++.+... |+.+..++|..+..++...++.+.+|+.+|+|+|
T Consensus 20 ~~K~~~-L~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T 92 (163)
T 2hjv_A 20 ENKFSL-LKDVLMT-ENPDSCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT 92 (163)
T ss_dssp GGHHHH-HHHHHHH-HCCSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred HHHHHH-HHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 456443 3334443 34678999999999999998888763 6889999999999999999999999999999999
Q ss_pred HHHhhcccccCCccEEEEcC
Q 003260 394 HSLLGSRVVYNNLGLLVVDE 413 (835)
Q Consensus 394 ~~~L~~~l~~~~l~llVIDE 413 (835)
..+...+++.++++||.-.
T Consensus 93 -~~~~~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 93 -DVAARGIDIENISLVINYD 111 (163)
T ss_dssp -GGGTTTCCCSCCSEEEESS
T ss_pred -ChhhcCCchhcCCEEEEeC
Confidence 6666678888888888643
No 116
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.20 E-value=0.017 Score=62.56 Aligned_cols=116 Identities=11% Similarity=0.003 Sum_probs=80.3
Q ss_pred HHHHHHHHH-hcCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCcCCcCCC
Q 003260 481 VISAIKYEL-DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559 (835)
Q Consensus 481 l~~~i~~~l-~~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~iie~GID 559 (835)
+++.+...+ ..+.+|++|++..+..+-+.+++... ++....+.|.....++ + -.+....|.+.|...+-|+|
T Consensus 113 ~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~--~~~y~RlDG~~~~~~~-k----~~~~~~~i~Lltsag~~gin 185 (328)
T 3hgt_A 113 VLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGN--KVHIKRYDGHSIKSAA-A----ANDFSCTVHLFSSEGINFTK 185 (328)
T ss_dssp HHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTS--SCEEEESSSCCC------------CCSEEEEEEESSCCCTTT
T ss_pred HHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcC--CCceEeCCCCchhhhh-h----cccCCceEEEEECCCCCCcC
Confidence 444444433 46789999999999998888888876 8899999998554321 1 12455666666776666776
Q ss_pred -----CCCccEEEEecCCCCChhHH-HHHhcccCCCC----CceEEEEEecCCCc
Q 003260 560 -----IQNANTIIVQDVQQFGLAQL-YQLRGRVGRAD----KEAHAYLFYPDKSL 604 (835)
Q Consensus 560 -----Ip~v~~VIi~d~p~~sl~~l-~Qr~GRaGR~g----~~G~ay~l~~~~~~ 604 (835)
...+++||.+|.+ |++..= +|.+-|+.|.+ +...+|.|++...+
T Consensus 186 ~~~~nl~~aD~VI~~Dsd-wNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti 239 (328)
T 3hgt_A 186 YPIKSKARFDMLICLDTT-VDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSI 239 (328)
T ss_dssp SCCCCCSCCSEEEECSTT-CCTTSHHHHHHHCCC---------CCEEEEEETTSH
T ss_pred cccccCCCCCEEEEECCC-CCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCH
Confidence 6789999999998 688764 88777777763 56788999988754
No 117
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=96.19 E-value=0.027 Score=54.41 Aligned_cols=90 Identities=16% Similarity=0.248 Sum_probs=72.4
Q ss_pred ccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHH
Q 003260 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 395 (835)
Q Consensus 316 KT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~ 395 (835)
|... +..++... .+.+++|.++++.-+..++..+... ++.+..+++..+..++...++.+.+|+.+|+|+| .
T Consensus 17 K~~~-l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~ 88 (165)
T 1fuk_A 17 KYEC-LTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-D 88 (165)
T ss_dssp HHHH-HHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-G
T ss_pred HHHH-HHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-C
Confidence 6543 44444443 5678999999999999988888763 6789999999999999999999999999999999 5
Q ss_pred HhhcccccCCccEEEEcC
Q 003260 396 LLGSRVVYNNLGLLVVDE 413 (835)
Q Consensus 396 ~L~~~l~~~~l~llVIDE 413 (835)
.+...+++.++++||.-+
T Consensus 89 ~~~~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 89 LLARGIDVQQVSLVINYD 106 (165)
T ss_dssp GGTTTCCCCSCSEEEESS
T ss_pred hhhcCCCcccCCEEEEeC
Confidence 666677888888887643
No 118
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.13 E-value=0.0052 Score=63.48 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=34.7
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 341 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr 341 (835)
++-.+++|+.|+|||+.++..+......|.+++++.|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC
Confidence 455688999999999999999999989999999999875
No 119
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.08 E-value=0.029 Score=54.74 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=38.3
Q ss_pred CHhHHHHHHHHHHhhh--cCCCCCcEEEEccCCCcccHHHHHHHHHHH-cCCCEEEEEcccHHHHHH
Q 003260 283 TPDQKKAFLDVERDLT--ERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQ 346 (835)
Q Consensus 283 tp~Q~~AI~~il~dl~--~~~~~~d~Ll~a~TGsGKT~val~a~l~~l-~~g~qvlVLvPtr~LA~Q 346 (835)
++.|.+++..+.+-.. ....+..++++||+|+|||..+-..+-... ..|..+++ ++..++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~-~~~~~~~~~ 81 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF-FDTKDLIFR 81 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE-EEHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE-EEHHHHHHH
Confidence 6789888887764321 113467899999999999987644333332 34545444 333344443
No 120
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.08 E-value=0.014 Score=65.93 Aligned_cols=102 Identities=15% Similarity=0.026 Sum_probs=60.4
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhh
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~ 383 (835)
.-.++.|+.|+|||......+ .....+|++||++++..+.+.+... +.. .
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~-----~~~~~lVlTpT~~aa~~l~~kl~~~-~~~---------~--------------- 211 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRV-----NFEEDLILVPGRQAAEMIRRRANAS-GII---------V--------------- 211 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHC-----CTTTCEEEESCHHHHHHHHHHHTTT-SCC---------C---------------
T ss_pred cEEEEEcCCCCCHHHHHHHHh-----ccCCeEEEeCCHHHHHHHHHHhhhc-Ccc---------c---------------
Confidence 345789999999998753322 2256799999999998877766431 100 0
Q ss_pred cCCcceeeccHHHh-hccccc--CCccEEEEcCccccchhhHHHHhhhcCCceEEEe
Q 003260 384 HGHLNIIVGTHSLL-GSRVVY--NNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTL 437 (835)
Q Consensus 384 ~G~~dIIVgT~~~L-~~~l~~--~~l~llVIDEaHr~g~~~~e~l~~l~~~~~vL~l 437 (835)
....-|.|-+.+ .+.... ...++|||||+..+.......+.......+++++
T Consensus 212 --~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~~~~l~~l~~~~~~~~vilv 266 (446)
T 3vkw_A 212 --ATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVY 266 (446)
T ss_dssp --CCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSCHHHHHHHHHHTTCSEEEEE
T ss_pred --cccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCCHHHHHHHHHhCCCCEEEEe
Confidence 011224444332 222221 2478999999998765555444444333444443
No 121
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.02 E-value=0.033 Score=53.58 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l 325 (835)
+...+..+.+.+. ...+..++++||+|+|||..+...+.
T Consensus 27 ~~~~~~~l~~~l~-~~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 27 RDTEIRRAIQILS-RRTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CHHHHHHHHHHHT-SSSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred chHHHHHHHHHHh-CCCCCceEEECCCCCCHHHHHHHHHH
Confidence 3444445554442 34467899999999999987654433
No 122
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=95.97 E-value=0.015 Score=57.72 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=62.0
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeec
Q 003260 313 GFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392 (835)
Q Consensus 313 GsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVg 392 (835)
.+.|.. ++.-++.....+.+++|.++++.-+..+++.+... |+.+..++|+.+..++...++.+.+|+.+|+|+
T Consensus 29 ~~~K~~-~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLva 102 (185)
T 2jgn_A 29 ESDKRS-FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVA 102 (185)
T ss_dssp GGGHHH-HHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEE
T ss_pred cHHHHH-HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 456754 34444554445788999999999999988888763 688999999999999999999999999999999
Q ss_pred cHHHhhcccccCCccEEEE
Q 003260 393 THSLLGSRVVYNNLGLLVV 411 (835)
Q Consensus 393 T~~~L~~~l~~~~l~llVI 411 (835)
| ..+...+++.++++||.
T Consensus 103 T-~~~~~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 103 T-AVAARGLDISNVKHVIN 120 (185)
T ss_dssp E-C------CCCSBSEEEE
T ss_pred c-ChhhcCCCcccCCEEEE
Confidence 9 55666677888888776
No 123
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.96 E-value=0.083 Score=57.42 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=30.8
Q ss_pred HhHHHHHHHHHHhhhcCCCCC--cEEEEccCCCcccHHHHHHHHHHHcC--CCEEEEEc
Q 003260 284 PDQKKAFLDVERDLTERETPM--DRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLA 338 (835)
Q Consensus 284 p~Q~~AI~~il~dl~~~~~~~--d~Ll~a~TGsGKT~val~a~l~~l~~--g~qvlVLv 338 (835)
..+.+.+...+.....+..+. .++|+||+|+|||..+-.. ...+.. +..++++-
T Consensus 23 ~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l-~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 23 EQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKL-WELYKDKTTARFVYIN 80 (389)
T ss_dssp HHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHH-HHHHTTSCCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHH-HHHHhhhcCeeEEEEe
Confidence 444444444444332234445 7999999999999876433 333332 34555553
No 124
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.96 E-value=0.013 Score=70.89 Aligned_cols=92 Identities=16% Similarity=0.330 Sum_probs=77.0
Q ss_pred HHHHhcCCeEEEEecCccChHHHHHHHHhhCC--CCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcC-cCCcCCCCCC
Q 003260 486 KYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-IVESGLDIQN 562 (835)
Q Consensus 486 ~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p--~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~-iie~GIDIp~ 562 (835)
...+..+.+++|++|+..-+...++.+.+.++ ++++..+||+++..++..++..+.+|+.+|+|+|. .+...+++.+
T Consensus 411 l~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~ 490 (780)
T 1gm5_A 411 LDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKN 490 (780)
T ss_dssp HHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSC
T ss_pred HHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccC
Confidence 33445688999999999988888888887765 68999999999999999999999999999999998 3456788999
Q ss_pred ccEEEEecCCCCChh
Q 003260 563 ANTIIVQDVQQFGLA 577 (835)
Q Consensus 563 v~~VIi~d~p~~sl~ 577 (835)
+.+||+..+++|+..
T Consensus 491 l~lVVIDEaHr~g~~ 505 (780)
T 1gm5_A 491 LGLVIIDEQHRFGVK 505 (780)
T ss_dssp CCEEEEESCCCC---
T ss_pred CceEEecccchhhHH
Confidence 999999988887644
No 125
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=95.95 E-value=0.027 Score=54.93 Aligned_cols=92 Identities=14% Similarity=0.149 Sum_probs=73.5
Q ss_pred CcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeecc
Q 003260 314 FGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 393 (835)
Q Consensus 314 sGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT 393 (835)
..|.. ++..++.. ..+.+++|.++++.-+..+++.+... |+.+..++|..+..++...++.+.+|..+|+|+|
T Consensus 16 ~~K~~-~L~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT 88 (172)
T 1t5i_A 16 NEKNR-KLFDLLDV-LEFNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 88 (172)
T ss_dssp GGHHH-HHHHHHHH-SCCSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES
T ss_pred HHHHH-HHHHHHHh-CCCCcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEEC
Confidence 45644 34444443 24678999999999999998888763 6889999999999999999999999999999999
Q ss_pred HHHhhcccccCCccEEEEcC
Q 003260 394 HSLLGSRVVYNNLGLLVVDE 413 (835)
Q Consensus 394 ~~~L~~~l~~~~l~llVIDE 413 (835)
..+...+++.++++||.-+
T Consensus 89 -~~~~~Gldi~~~~~Vi~~d 107 (172)
T 1t5i_A 89 -NLFGRGMDIERVNIAFNYD 107 (172)
T ss_dssp -SCCSTTCCGGGCSEEEESS
T ss_pred -CchhcCcchhhCCEEEEEC
Confidence 5666677788888888644
No 126
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.033 Score=60.35 Aligned_cols=39 Identities=8% Similarity=-0.163 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHH
Q 003260 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a 323 (835)
.|...+...+........+.+++|.||+|+|||.++-..
T Consensus 27 ~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v 65 (318)
T 3te6_A 27 EDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDV 65 (318)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHH
Confidence 444444444443334567889999999999999886433
No 127
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=95.91 E-value=0.02 Score=55.93 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=65.8
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
.+.++||.++++.-+..++..+... |+.+..++|..+..++...++.+.+|..+|+|+| ..+...+++.++++|
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT-~~~~~Gid~~~~~~V 106 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT-NVCARGIDVKQVTIV 106 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC-CSCCTTTCCTTEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-cchhcCCCcccCCEE
Confidence 4579999999999999988888752 6889999999999999999999999999999999 555666778888888
Q ss_pred EE
Q 003260 410 VV 411 (835)
Q Consensus 410 VI 411 (835)
|.
T Consensus 107 i~ 108 (175)
T 2rb4_A 107 VN 108 (175)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 128
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.82 E-value=0.07 Score=57.17 Aligned_cols=37 Identities=24% Similarity=0.164 Sum_probs=24.9
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
.+..++++||+|+|||..+-..+-.....+..++++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~ 72 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS 72 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3568999999999999876444333333355666554
No 129
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=95.80 E-value=0.033 Score=55.50 Aligned_cols=75 Identities=7% Similarity=0.188 Sum_probs=65.9
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEE
Q 003260 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llV 410 (835)
+.++||.++++.-+..+++.+... |+.+..++|..+..++...++.+.+|+.+|+|+| ..+...+++.++++||
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-~~~~~Gldi~~v~~VI 127 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-DVASKGLDFPAIQHVI 127 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-HHHHTTCCCCCCSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-CchhcCCCcccCCEEE
Confidence 568999999999999999888764 6889999999999999999999999999999999 5566677888888887
Q ss_pred E
Q 003260 411 V 411 (835)
Q Consensus 411 I 411 (835)
.
T Consensus 128 ~ 128 (191)
T 2p6n_A 128 N 128 (191)
T ss_dssp E
T ss_pred E
Confidence 6
No 130
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.77 E-value=0.024 Score=54.49 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHH
Q 003260 287 KKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 287 ~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a 323 (835)
...+..+.+.+. ...+..++++||+|+|||..+-..
T Consensus 28 ~~~~~~l~~~l~-~~~~~~~ll~G~~G~GKT~l~~~~ 63 (195)
T 1jbk_A 28 DEEIRRTIQVLQ-RRTKNNPVLIGEPGVGKTAIVEGL 63 (195)
T ss_dssp HHHHHHHHHHHT-SSSSCEEEEECCTTSCHHHHHHHH
T ss_pred hHHHHHHHHHHh-cCCCCceEEECCCCCCHHHHHHHH
Confidence 334444444442 344678999999999999876433
No 131
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.72 E-value=0.019 Score=57.89 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEE
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 336 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlV 336 (835)
+..++..+..-. ..+.+..++++||+|+|||..+-..+-.....+..+++
T Consensus 36 ~~~~~~~l~~~~-~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~ 85 (242)
T 3bos_A 36 NDELIGALKSAA-SGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFY 85 (242)
T ss_dssp CHHHHHHHHHHH-HTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHH-hCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 345555554433 33456889999999999998764443333333344433
No 132
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.67 E-value=0.044 Score=65.29 Aligned_cols=99 Identities=16% Similarity=0.262 Sum_probs=81.1
Q ss_pred cccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccH
Q 003260 315 GKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 394 (835)
Q Consensus 315 GKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~ 394 (835)
|+....+..+......+.+++|.++|+.-+..+++.+.+. |+.+.++++..+..++...++.+..|+++|+|||
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT- 496 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI- 496 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-
Confidence 3333333344444557889999999999999988888763 6889999999999999999999999999999999
Q ss_pred HHhhcccccCCccEEEEcCccccch
Q 003260 395 SLLGSRVVYNNLGLLVVDEEQRFGV 419 (835)
Q Consensus 395 ~~L~~~l~~~~l~llVIDEaHr~g~ 419 (835)
..+...+.+.++++||+=+++.+|+
T Consensus 497 ~~l~~GlDip~v~lVI~~d~d~~G~ 521 (664)
T 1c4o_A 497 NLLREGLDIPEVSLVAILDADKEGF 521 (664)
T ss_dssp CCCCTTCCCTTEEEEEETTTTSCSG
T ss_pred ChhhcCccCCCCCEEEEeCCcccCC
Confidence 5667778889999999999988876
No 133
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=95.66 E-value=0.05 Score=55.01 Aligned_cols=91 Identities=20% Similarity=0.231 Sum_probs=73.2
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeec
Q 003260 313 GFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392 (835)
Q Consensus 313 GsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVg 392 (835)
-..|..+. .-++.. ..+.+++|.++++.-+..+++.+... |+.+..++|..+..++...+..+.+|..+|+|+
T Consensus 15 ~~~k~~~l-~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlva 87 (212)
T 3eaq_A 15 VRGRLEVL-SDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVA 87 (212)
T ss_dssp TTSHHHHH-HHHHHH-HCCSCEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEE
T ss_pred HHHHHHHH-HHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEe
Confidence 35565443 333333 34679999999999999998888764 688999999999999999999999999999999
Q ss_pred cHHHhhcccccCCccEEEE
Q 003260 393 THSLLGSRVVYNNLGLLVV 411 (835)
Q Consensus 393 T~~~L~~~l~~~~l~llVI 411 (835)
| ..+...+++.++++||.
T Consensus 88 T-~~~~~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 88 T-DVAARGLDIPQVDLVVH 105 (212)
T ss_dssp C-TTTTCSSSCCCBSEEEE
T ss_pred c-ChhhcCCCCccCcEEEE
Confidence 9 55666778888888875
No 134
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.65 E-value=0.044 Score=65.21 Aligned_cols=99 Identities=19% Similarity=0.294 Sum_probs=81.1
Q ss_pred cccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccH
Q 003260 315 GKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 394 (835)
Q Consensus 315 GKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~ 394 (835)
|+-...+..+......+.+++|.++|+.-+..+++.+.+. |+++.++++..+..++...++.+.+|+++|+|||.
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~ 503 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN 503 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc
Confidence 4333333344445567889999999999999988888763 68899999999999999999999999999999995
Q ss_pred HHhhcccccCCccEEEEcCccccch
Q 003260 395 SLLGSRVVYNNLGLLVVDEEQRFGV 419 (835)
Q Consensus 395 ~~L~~~l~~~~l~llVIDEaHr~g~ 419 (835)
.+...+.+.++++||+-+++.+|+
T Consensus 504 -~l~~GlDip~v~lVi~~d~d~~G~ 527 (661)
T 2d7d_A 504 -LLREGLDIPEVSLVAILDADKEGF 527 (661)
T ss_dssp -CCSTTCCCTTEEEEEETTTTCCTT
T ss_pred -hhhCCcccCCCCEEEEeCcccccC
Confidence 556678888999999999998876
No 135
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.62 E-value=0.068 Score=58.19 Aligned_cols=41 Identities=24% Similarity=0.181 Sum_probs=27.3
Q ss_pred CHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHH
Q 003260 283 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 283 tp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a 323 (835)
+..+.+.+...+..+..+..+..++++||+|+|||..+-..
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l 65 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYI 65 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHH
Confidence 44555555544444334455678999999999999886433
No 136
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.62 E-value=0.072 Score=52.99 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=17.6
Q ss_pred CCCcEEEEccCCCcccHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
.+..+++.||+|+|||..+-..+
T Consensus 44 ~~~~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 44 IHHAYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp CCSEEEEECSTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34568999999999998764433
No 137
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.40 E-value=0.049 Score=58.30 Aligned_cols=37 Identities=22% Similarity=0.064 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~ 322 (835)
|..++..+.+.+..+..+.-+|+.||+|+|||..+-.
T Consensus 31 ~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~ 67 (324)
T 3u61_B 31 PAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKA 67 (324)
T ss_dssp CHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHH
Confidence 3444444444443334445567778899999987643
No 138
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.38 E-value=0.02 Score=68.94 Aligned_cols=80 Identities=18% Similarity=0.143 Sum_probs=61.1
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-C---CEEEEEcccHHHHHHHHHHHHHhh
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-G---KQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-g---~qvlVLvPtr~LA~Q~~~~~~~~f 355 (835)
-.++|.|.+|+... ...++|.|..|||||.+...-+...+.. + .++++++.|+..|.++.+++...+
T Consensus 10 ~~Ln~~Q~~av~~~---------~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT---------EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHCC---------SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhCC---------CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 36899999997431 3578999999999999987666655543 2 589999999999999999998866
Q ss_pred cCC-CCcEEEEecC
Q 003260 356 SKY-PDIKVGLLSR 368 (835)
Q Consensus 356 ~~~-~gi~V~~l~g 368 (835)
+.. .++.|..+++
T Consensus 81 ~~~~~~~~v~Tfhs 94 (724)
T 1pjr_A 81 GGAAEDVWISTFHS 94 (724)
T ss_dssp GGGGTTSEEEEHHH
T ss_pred cccccCcEEeeHHH
Confidence 432 2467776655
No 139
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.37 E-value=0.071 Score=52.45 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHH
Q 003260 287 KKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 287 ~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a 323 (835)
..++..+.+.+.. .....++++||+|+|||..+-..
T Consensus 23 ~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKT~l~~~l 58 (226)
T 2chg_A 23 DEVIQRLKGYVER-KNIPHLLFSGPPGTGKTATAIAL 58 (226)
T ss_dssp HHHHHHHHHHHHT-TCCCCEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHH
Confidence 3444444443322 33345999999999999875433
No 140
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.35 E-value=0.14 Score=54.88 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=17.8
Q ss_pred CCCCcEEEEccCCCcccHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~ 322 (835)
.....+++.||+|+|||..+-.
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHH
Confidence 3456899999999999987643
No 141
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.23 E-value=0.11 Score=55.85 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a 323 (835)
|.+++..+.+.+..+ +....|+.||.|+|||..+...
T Consensus 2 ~~~~~~~L~~~i~~~-~~~~~Lf~Gp~G~GKtt~a~~l 38 (305)
T 2gno_A 2 AKDQLETLKRIIEKS-EGISILINGEDLSYPREVSLEL 38 (305)
T ss_dssp --CHHHHHHHHHHTC-SSEEEEEECSSSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCC-CCcEEEEECCCCCCHHHHHHHH
Confidence 556666666655433 3557899999999999876543
No 142
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.21 E-value=0.11 Score=58.67 Aligned_cols=117 Identities=20% Similarity=0.192 Sum_probs=62.4
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc--ccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA--PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv--Ptr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~ 380 (835)
+.-++++|++|+|||..+...+......|++|+++. +.+.-+.+....+.... ++.+.......+... ...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~----gv~~~~~~~~~dp~~---i~~ 169 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQI----GVQVYGEPNNQNPIE---IAK 169 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTT----TCCEECCTTCSCHHH---HHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhc----CCceeeccccCCHHH---HHH
Confidence 566788999999999987655544455677887765 44444444334443322 444433322222111 000
Q ss_pred hhhcCCcceeeccHHHhhcccccCCccEEEEcCccccc--hh--hHHH----HhhhcCCceEEEeecCC
Q 003260 381 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFG--VK--QKEK----IASFKISVDVLTLSATP 441 (835)
Q Consensus 381 ~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g--~~--~~e~----l~~l~~~~~vL~lSATp 441 (835)
..+ ......++++||||++-+.. .. .... .....++.-++.++|+.
T Consensus 170 --------------~al-~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 170 --------------KGV-DIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp --------------HHH-HHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred --------------HHH-HHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 011 12234578999999998755 21 1111 22233445566677764
No 143
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.01 E-value=0.11 Score=56.27 Aligned_cols=24 Identities=42% Similarity=0.523 Sum_probs=19.1
Q ss_pred CCCCCcEEEEccCCCcccHHHHHH
Q 003260 300 RETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 300 ~~~~~d~Ll~a~TGsGKT~val~a 323 (835)
...+..++++||+|+|||..+-..
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~~ 64 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARLV 64 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHH
Confidence 355678999999999999876433
No 144
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=94.99 E-value=0.079 Score=58.19 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=71.4
Q ss_pred HHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhc
Q 003260 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS 399 (835)
Q Consensus 320 al~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~ 399 (835)
++..++.....+.+++|.++++.-+..+++.+.+. ++.+..+++..+..++...++.+.+|+.+|+|+|. .+..
T Consensus 265 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-~~~~ 338 (417)
T 2i4i_A 265 FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VAAR 338 (417)
T ss_dssp HHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-HHHT
T ss_pred HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-hhhc
Confidence 34444444445789999999999999998888763 68899999999999999999999999999999996 5666
Q ss_pred ccccCCccEEEE
Q 003260 400 RVVYNNLGLLVV 411 (835)
Q Consensus 400 ~l~~~~l~llVI 411 (835)
.+++.++++||.
T Consensus 339 Gidip~v~~Vi~ 350 (417)
T 2i4i_A 339 GLDISNVKHVIN 350 (417)
T ss_dssp TSCCCCEEEEEE
T ss_pred CCCcccCCEEEE
Confidence 788888888775
No 145
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.96 E-value=0.13 Score=54.29 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=18.2
Q ss_pred CCCCcEEEEccCCCcccHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a 323 (835)
..+.+++++||+|+|||..+-..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~l 87 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKM 87 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHH
Confidence 34567999999999999886433
No 146
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.90 E-value=0.03 Score=71.40 Aligned_cols=68 Identities=24% Similarity=0.240 Sum_probs=55.4
Q ss_pred CCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCC------CEEEEEcccHHHHHHHHHHHHH
Q 003260 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG------KQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 280 ~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g------~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
..+|+.|.+||.. . +.+++|.|..|||||.+.+.-+...+..+ .+++++++|+..|..+.+++..
T Consensus 9 ~~~t~eQ~~~i~~--------~-~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 9 STWTDDQWNAIVS--------T-GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp -CCCHHHHHHHHC--------C-SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC--------C-CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 4789999999642 1 46899999999999999877766666553 3899999999999999999887
Q ss_pred hhc
Q 003260 354 RFS 356 (835)
Q Consensus 354 ~f~ 356 (835)
.++
T Consensus 80 ~l~ 82 (1232)
T 3u4q_A 80 ALE 82 (1232)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 147
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.89 E-value=0.046 Score=52.28 Aligned_cols=21 Identities=19% Similarity=0.225 Sum_probs=17.1
Q ss_pred CCCcEEEEccCCCcccHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~ 322 (835)
.+..+++.||+|+|||..+-.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 457799999999999987533
No 148
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.84 E-value=0.12 Score=55.90 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a 323 (835)
|..++..+...+..+..+..++++||.|+|||..+-..
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~l 58 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHH
Confidence 44444444444433333456899999999999886433
No 149
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.78 E-value=0.094 Score=54.36 Aligned_cols=20 Identities=35% Similarity=0.381 Sum_probs=16.9
Q ss_pred CCCcEEEEccCCCcccHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val 321 (835)
.+..+++.|++|+|||..+-
T Consensus 28 ~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHH
Confidence 35789999999999998763
No 150
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.70 E-value=0.038 Score=58.45 Aligned_cols=21 Identities=38% Similarity=0.409 Sum_probs=16.9
Q ss_pred CcEEEEccCCCcccHHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~ 324 (835)
..++++||+|+|||..+-..+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la 68 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLA 68 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHH
Confidence 368999999999998864433
No 151
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=94.67 E-value=0.099 Score=66.11 Aligned_cols=96 Identities=17% Similarity=0.303 Sum_probs=81.9
Q ss_pred HHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhccc
Q 003260 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV 401 (835)
Q Consensus 322 ~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l 401 (835)
..+...+..+.+++|++|++.-+..+++.+++.+ |+.++..++|..+..++...+..+.+|+++|+|+|. .+...+
T Consensus 803 ~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~---p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-v~e~Gi 878 (1151)
T 2eyq_A 803 EAILREILRGGQVYYLYNDVENIQKAAERLAELV---PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-IIETGI 878 (1151)
T ss_dssp HHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHC---TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-TTGGGS
T ss_pred HHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC---CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-cceeee
Confidence 3444556678999999999999999999888753 578899999999999999999999999999999995 666678
Q ss_pred ccCCccEEEEcCccccchhh
Q 003260 402 VYNNLGLLVVDEEQRFGVKQ 421 (835)
Q Consensus 402 ~~~~l~llVIDEaHr~g~~~ 421 (835)
++.++++||+..++.++..+
T Consensus 879 Dip~v~~VIi~~~~~~~l~~ 898 (1151)
T 2eyq_A 879 DIPTANTIIIERADHFGLAQ 898 (1151)
T ss_dssp CCTTEEEEEETTTTSSCHHH
T ss_pred cccCCcEEEEeCCCCCCHHH
Confidence 89999999999898887654
No 152
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.65 E-value=0.23 Score=51.67 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=18.9
Q ss_pred CCCCcEEEEccCCCcccHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
..+..++++||+|+|||..+-..+
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia 85 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIA 85 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHH
Confidence 445789999999999998864433
No 153
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=94.61 E-value=0.11 Score=55.73 Aligned_cols=93 Identities=19% Similarity=0.231 Sum_probs=72.7
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeec
Q 003260 313 GFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392 (835)
Q Consensus 313 GsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVg 392 (835)
-..|..+ +.-++... .+.++||.++++.-+..+++.+... ++.+..++|..+..++...+..+.+|..+|+|+
T Consensus 12 ~~~K~~~-L~~ll~~~-~~~~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVa 84 (300)
T 3i32_A 12 VRGRLEV-LSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVA 84 (300)
T ss_dssp SSSHHHH-HHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEE
T ss_pred HHHHHHH-HHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEE
Confidence 3556544 33333333 3788999999999998888877653 688999999999999999999999999999999
Q ss_pred cHHHhhcccccCCccEEEEcC
Q 003260 393 THSLLGSRVVYNNLGLLVVDE 413 (835)
Q Consensus 393 T~~~L~~~l~~~~l~llVIDE 413 (835)
| ..+...+++.++++||.=+
T Consensus 85 T-~va~~Gidi~~v~~VI~~d 104 (300)
T 3i32_A 85 T-DVAARGLDIPQVDLVVHYR 104 (300)
T ss_dssp C-STTTCSTTCCCCSEEEESS
T ss_pred e-chhhcCccccceeEEEEcC
Confidence 9 4555667888888887533
No 154
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.60 E-value=0.32 Score=54.92 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=36.0
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc--ccHHHHHHHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA--PTIVLAKQHFDVVSE 353 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv--Ptr~LA~Q~~~~~~~ 353 (835)
+.-++++|++|+|||..+...+......|.+|+++. |.+.-+.+....+.+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~ 152 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLD 152 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHG
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHH
Confidence 567888999999999997666655556788887776 555555544444444
No 155
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=94.58 E-value=0.22 Score=57.43 Aligned_cols=82 Identities=15% Similarity=0.233 Sum_probs=70.5
Q ss_pred cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccE
Q 003260 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 408 (835)
Q Consensus 329 ~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~l 408 (835)
..+.+++|.++++.-+..+++.+.+.+.. ++.+..++++.+..++...++.+.+|+.+|+|+|. .+...+++.++++
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-~~~~GiDip~v~~ 413 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-VGARGMDFPNVHE 413 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-GGTSSCCCTTCCE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-hhhcCCCcccCCE
Confidence 45789999999999999999999876543 57899999999999999999999999999999995 5556788888998
Q ss_pred EEEcC
Q 003260 409 LVVDE 413 (835)
Q Consensus 409 lVIDE 413 (835)
||.-.
T Consensus 414 VI~~~ 418 (563)
T 3i5x_A 414 VLQIG 418 (563)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 88654
No 156
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.58 E-value=0.033 Score=52.58 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCCcccHHH
Q 003260 302 TPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~va 320 (835)
.+.++++.|++|+|||.++
T Consensus 26 ~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp CSSCEEEEEETTCCHHHHH
T ss_pred CCCcEEEECCCCccHHHHH
Confidence 3568999999999999765
No 157
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.58 E-value=0.027 Score=63.93 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=16.7
Q ss_pred CCCcEEEEccCCCcccHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val 321 (835)
....+|++||+|+|||..+-
T Consensus 49 ~~~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHH
T ss_pred CCcEEEEECCCCCcHHHHHH
Confidence 34679999999999998764
No 158
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.45 E-value=0.098 Score=52.61 Aligned_cols=36 Identities=25% Similarity=0.168 Sum_probs=32.7
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcc
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvP 339 (835)
..+++.++.|.|||.+++-.++.++..|.+|+|+.-
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF 64 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQF 64 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 578999999999999999999999999999999953
No 159
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.44 E-value=0.069 Score=63.22 Aligned_cols=115 Identities=19% Similarity=0.168 Sum_probs=74.2
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCC
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 360 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~g 360 (835)
.+|.+|.+|+..+.+.. ...++|.|+-|.|||.+.-+++... . ..++|.+|+..-+....+ +...
T Consensus 175 ~~T~dQ~~al~~~~~~~-----~~~~vlta~RGRGKSa~lG~~~a~~-~--~~~~vtAP~~~a~~~l~~-~~~~------ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMP-----PGVAAVTAARGRGKSALAGQLISRI-A--GRAIVTAPAKASTDVLAQ-FAGE------ 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCC-----SEEEEEEECTTSSHHHHHHHHHHHS-S--SCEEEECSSCCSCHHHHH-HHGG------
T ss_pred CCCHHHHHHHHHHHHhh-----hCeEEEecCCCCCHHHHHHHHHHHH-H--hCcEEECCCHHHHHHHHH-HhhC------
Confidence 78999999998887532 1347999999999996654444333 2 347999999876654322 2110
Q ss_pred cEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhhhcCCceEEEeecC
Q 003260 361 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSAT 440 (835)
Q Consensus 361 i~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~l~~~~~vL~lSAT 440 (835)
.|-+..|..+.. ...+.++||||||=.+.......+.. ....++||.|
T Consensus 240 ---------------------------~i~~~~Pd~~~~--~~~~~dlliVDEAAaIp~pll~~ll~---~~~~v~~~tT 287 (671)
T 2zpa_A 240 ---------------------------KFRFIAPDALLA--SDEQADWLVVDEAAAIPAPLLHQLVS---RFPRTLLTTT 287 (671)
T ss_dssp ---------------------------GCCBCCHHHHHH--SCCCCSEEEEETGGGSCHHHHHHHHT---TSSEEEEEEE
T ss_pred ---------------------------CeEEeCchhhhh--CcccCCEEEEEchhcCCHHHHHHHHh---hCCeEEEEec
Confidence 022334443321 23468999999999988776665544 3345677778
Q ss_pred CC
Q 003260 441 PI 442 (835)
Q Consensus 441 p~ 442 (835)
..
T Consensus 288 v~ 289 (671)
T 2zpa_A 288 VQ 289 (671)
T ss_dssp BS
T ss_pred CC
Confidence 63
No 160
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.30 E-value=0.14 Score=56.48 Aligned_cols=98 Identities=19% Similarity=0.162 Sum_probs=74.9
Q ss_pred CCCcccHHHHHHHHHHH--cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecC--------CCCHHHHHHHHHh
Q 003260 312 VGFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR--------FQSKAEKEEHLDM 381 (835)
Q Consensus 312 TGsGKT~val~a~l~~l--~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g--------~~s~~e~~~~l~~ 381 (835)
..++|.......+.... ..+.+++|.++++.-+..+++.+.+. |+.+..++| ..+..++...++.
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~ 414 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILDE 414 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCHHHHHHHHHH
Confidence 45667655444433333 46789999999999999988888764 678999999 7788899999999
Q ss_pred hhcCCcceeeccHHHhhcccccCCccEEEEcCcc
Q 003260 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 382 l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaH 415 (835)
+.+|.++|+|+| ..+...+++.++++||+-+..
T Consensus 415 F~~~~~~vLv~T-~~~~~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 415 FARGEFNVLVAT-SVGEEGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp HHHTSCSEEEEC-GGGGGGGGSTTCCEEEESSCC
T ss_pred HhcCCceEEEEC-CccccCCCchhCCEEEEeCCC
Confidence 999999999999 567777888889988865543
No 161
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.29 E-value=0.22 Score=53.40 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=17.3
Q ss_pred CCcEEEEccCCCcccHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a 323 (835)
+..+|++||+|+|||..+-..
T Consensus 51 ~~~vLl~GppGtGKT~la~ai 71 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAV 71 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 467999999999999876433
No 162
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.21 E-value=0.18 Score=56.87 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCcccHHHH
Q 003260 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val 321 (835)
+..++++||+|+|||..+-
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5689999999999998764
No 163
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.01 E-value=0.28 Score=51.13 Aligned_cols=21 Identities=43% Similarity=0.540 Sum_probs=17.7
Q ss_pred CCCCcEEEEccCCCcccHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val 321 (835)
..+..++++||+|+|||..+-
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHH
Confidence 456789999999999998763
No 164
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=93.91 E-value=0.24 Score=57.56 Aligned_cols=84 Identities=14% Similarity=0.219 Sum_probs=71.4
Q ss_pred cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccE
Q 003260 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 408 (835)
Q Consensus 329 ~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~l 408 (835)
..+.+++|.++|+.-+..+++.+.+.+.. ++.+..+++..+..++...++.+.+|+.+|+|+|. .+...+++.++++
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-~~~~GiDip~v~~ 362 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-VGARGMDFPNVHE 362 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-GGTSSCCCTTCCE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcC--CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-hhhcCCCcccCCE
Confidence 44679999999999999999999876543 57899999999999999999999999999999995 5556778888998
Q ss_pred EEEcCcc
Q 003260 409 LVVDEEQ 415 (835)
Q Consensus 409 lVIDEaH 415 (835)
||.-..-
T Consensus 363 VI~~~~p 369 (579)
T 3sqw_A 363 VLQIGVP 369 (579)
T ss_dssp EEEESCC
T ss_pred EEEcCCC
Confidence 8875543
No 165
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.91 E-value=0.29 Score=51.67 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a 323 (835)
|..++..+...+.. .+...+++.||+|+|||..+-..
T Consensus 30 ~~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKT~la~~l 66 (327)
T 1iqp_A 30 QEHIVKRLKHYVKT-GSMPHLLFAGPPGVGKTTAALAL 66 (327)
T ss_dssp CHHHHHHHHHHHHH-TCCCEEEEESCTTSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CCCCeEEEECcCCCCHHHHHHHH
Confidence 44555555444322 33345999999999999876433
No 166
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.84 E-value=0.041 Score=51.95 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=17.6
Q ss_pred CCCCcEEEEccCCCcccHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val 321 (835)
..+.++++.||+|+|||.++-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 346789999999999998763
No 167
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.79 E-value=0.6 Score=50.92 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=17.7
Q ss_pred CCcEEEEccCCCcccHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~ 324 (835)
+..+|++||+|+|||..+-..+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala 105 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVA 105 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHH
Confidence 4679999999999998864333
No 168
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.75 E-value=0.44 Score=50.47 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=17.3
Q ss_pred CCCcEEEEccCCCcccHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~ 322 (835)
.+..++++||+|+|||..+-.
T Consensus 37 ~~~~vll~G~~GtGKT~la~~ 57 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHV 57 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHH
Confidence 456899999999999987643
No 169
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.72 E-value=0.16 Score=54.34 Aligned_cols=79 Identities=15% Similarity=0.251 Sum_probs=67.0
Q ss_pred cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccE
Q 003260 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 408 (835)
Q Consensus 329 ~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~l 408 (835)
..+.+++|.++++.-+..+++.+.+. +..+..+++..+..++...++.+.+|+.+|+|+| ..+...+++.++++
T Consensus 236 ~~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-~~~~~Gid~~~~~~ 309 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT-DVMSRGIDVNDLNC 309 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC-TTHHHHCCCSCCSE
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEEC-ChhhcCCCcccCCE
Confidence 34678999999999999988888763 6789999999999999999999999999999999 45555677888888
Q ss_pred EEEcC
Q 003260 409 LVVDE 413 (835)
Q Consensus 409 lVIDE 413 (835)
||.-.
T Consensus 310 Vi~~~ 314 (367)
T 1hv8_A 310 VINYH 314 (367)
T ss_dssp EEESS
T ss_pred EEEec
Confidence 88643
No 170
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.69 E-value=0.15 Score=55.37 Aligned_cols=80 Identities=13% Similarity=0.148 Sum_probs=68.7
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
.+.+++|.++++.-+..+++.+.+. ++.+..++++.+..++...++.+.+|+.+|+|+| ..+...+++.++++|
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-~~~~~Gidi~~~~~V 322 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-NLFGRGMDIERVNIA 322 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEES-CCCSSCBCCTTEEEE
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEC-ChhhcCCCcccCCEE
Confidence 5789999999999999998888763 6789999999999999999999999999999999 455667788889988
Q ss_pred EEcCcc
Q 003260 410 VVDEEQ 415 (835)
Q Consensus 410 VIDEaH 415 (835)
|.-..-
T Consensus 323 i~~~~p 328 (391)
T 1xti_A 323 FNYDMP 328 (391)
T ss_dssp EESSCC
T ss_pred EEeCCC
Confidence 875543
No 171
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=93.63 E-value=0.17 Score=55.22 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=66.8
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
.+.+++|.++++.-+..+++.+.+. +..+..+++..+..++...++.+.+|+.+|+|+|. .+...+++.++++|
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidip~~~~V 338 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-VCARGIDVEQVSVV 338 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-GGTSSCCCTTEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-ccccCCCccCCCEE
Confidence 4679999999999999999888763 67899999999999999999999999999999995 56667888889988
Q ss_pred EE
Q 003260 410 VV 411 (835)
Q Consensus 410 VI 411 (835)
|.
T Consensus 339 i~ 340 (412)
T 3fht_A 339 IN 340 (412)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 172
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=93.58 E-value=0.27 Score=55.89 Aligned_cols=96 Identities=16% Similarity=0.182 Sum_probs=71.8
Q ss_pred ccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHH
Q 003260 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 395 (835)
Q Consensus 316 KT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~ 395 (835)
|.......+......+.+.++++..+.-+..+++.+.+ . +.++..++|..+..++...+..+.+|+.+|+|+|..
T Consensus 332 ~~~~l~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~----~-~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~ 406 (510)
T 2oca_A 332 RNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKN----E-YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYG 406 (510)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHT----T-CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHH----c-CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcC
Confidence 33333333334444566666666666656555555554 2 358999999999999999999999999999999999
Q ss_pred HhhcccccCCccEEEEcCccc
Q 003260 396 LLGSRVVYNNLGLLVVDEEQR 416 (835)
Q Consensus 396 ~L~~~l~~~~l~llVIDEaHr 416 (835)
.+...+++.++++||+.....
T Consensus 407 ~~~~GiDip~v~~vi~~~~~~ 427 (510)
T 2oca_A 407 VFSTGISVKNLHHVVLAHGVK 427 (510)
T ss_dssp HHHHSCCCCSEEEEEESSCCC
T ss_pred hhhcccccccCcEEEEeCCCC
Confidence 999899999999999988774
No 173
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.50 E-value=0.19 Score=54.40 Aligned_cols=81 Identities=12% Similarity=0.218 Sum_probs=69.4
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
.+.+++|.++++.-+..+++.+++. +..+..+++..+..++...++.+.+|+.+|+|+|. .+...+++.++++|
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidip~~~~V 315 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-VLARGIDIPTVSMV 315 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-GGSSSCCCTTEEEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-hhhcCCCcccCCEE
Confidence 4679999999999999998888763 67899999999999999999999999999999994 55667888899998
Q ss_pred EEcCccc
Q 003260 410 VVDEEQR 416 (835)
Q Consensus 410 VIDEaHr 416 (835)
|.-....
T Consensus 316 i~~~~p~ 322 (395)
T 3pey_A 316 VNYDLPT 322 (395)
T ss_dssp EESSCCB
T ss_pred EEcCCCC
Confidence 8755543
No 174
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.50 E-value=0.51 Score=51.02 Aligned_cols=41 Identities=27% Similarity=0.258 Sum_probs=25.5
Q ss_pred HhHHHHHHHHHHhhhcCC-CCCcEEEEccCCCcccHHHHHHH
Q 003260 284 PDQKKAFLDVERDLTERE-TPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 284 p~Q~~AI~~il~dl~~~~-~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
+.+.+++..+...+.... .+..+|+.||+|+|||..+-..+
T Consensus 50 ~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la 91 (368)
T 3uk6_A 50 LAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMA 91 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 444444444444332222 23689999999999998765443
No 175
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.47 E-value=0.29 Score=53.96 Aligned_cols=20 Identities=35% Similarity=0.366 Sum_probs=17.1
Q ss_pred CCcEEEEccCCCcccHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~ 322 (835)
+..+|+.||+|+|||.++-.
T Consensus 148 ~~~vLL~GppGtGKT~la~a 167 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKA 167 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999987643
No 176
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.35 E-value=0.2 Score=54.75 Aligned_cols=77 Identities=9% Similarity=0.125 Sum_probs=66.5
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
.+.+++|.++++.-+..+++.+.+. ++.+..+++..+..++...++.+.+|+.+|+|+| ..+...+++.++++|
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-~~~~~Gidip~~~~V 330 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS-DLLTRGIDIQAVNVV 330 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEES-SCSSSSCCCTTEEEE
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-CccccCCCccCCCEE
Confidence 5679999999999999999888764 6789999999999999999999999999999999 455566788888887
Q ss_pred EEc
Q 003260 410 VVD 412 (835)
Q Consensus 410 VID 412 (835)
|.-
T Consensus 331 i~~ 333 (400)
T 1s2m_A 331 INF 333 (400)
T ss_dssp EES
T ss_pred EEe
Confidence 753
No 177
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.33 E-value=0.44 Score=48.75 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=17.6
Q ss_pred CCCcEEEEccCCCcccHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a 323 (835)
.+..++++||+|+|||..+-..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~l 59 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAV 59 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 3567999999999999876433
No 178
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.24 E-value=0.26 Score=53.16 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
|..++..+...+..+.-+ +++++||.|+|||..+...+
T Consensus 30 ~~~~~~~L~~~i~~g~~~-~~ll~Gp~G~GKTtla~~la 67 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLP-HLLFYGPPGTGKTSTIVALA 67 (340)
T ss_dssp CHHHHHHHHHHHHTTCCC-CEEEECSSSSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCc-eEEEECCCCCCHHHHHHHHH
Confidence 566666666555433223 38999999999998865443
No 179
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.15 E-value=0.3 Score=54.41 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=18.4
Q ss_pred CCCCcEEEEccCCCcccHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a 323 (835)
..++.+|+.||+|+|||..+-..
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAi 202 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAV 202 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHH
Confidence 44678999999999999876433
No 180
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.12 E-value=0.42 Score=57.53 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=17.0
Q ss_pred cEEEEccCCCcccHHHHHHHH
Q 003260 305 DRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~a~l 325 (835)
.++++||||+|||..+-..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999998754433
No 181
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.11 E-value=0.36 Score=51.99 Aligned_cols=39 Identities=31% Similarity=0.353 Sum_probs=24.6
Q ss_pred HhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHH
Q 003260 284 PDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 284 p~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~ 322 (835)
..+.+.+...+........+..++|.||+|+|||..+-.
T Consensus 26 ~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 26 EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp HHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHH
Confidence 344444443333221245567899999999999987643
No 182
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.10 E-value=0.16 Score=53.43 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
|..++..+.+.+.. .....++++||+|+|||..+-..+
T Consensus 22 ~~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKt~la~~l~ 59 (319)
T 2chq_A 22 QDEVIQRLKGYVER-KNIPHLLFSGPPGTGKTATAIALA 59 (319)
T ss_dssp CHHHHHHHHTTTTT-TCCCCEEEESSSSSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHhC-CCCCeEEEECcCCcCHHHHHHHHH
Confidence 55666666654433 333359999999999998764443
No 183
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=92.92 E-value=0.14 Score=50.75 Aligned_cols=122 Identities=13% Similarity=0.188 Sum_probs=79.2
Q ss_pred CCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHH-HcCCCEEEEEcccHHHHHHHHHHHHHhhcCCC
Q 003260 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP 359 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~-l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~ 359 (835)
+.++.|..|+..++.+- +.-.+|.|.-|++||...+..+... -..|++|.+|+|+..-+....+...
T Consensus 34 ~~~~~~~~a~~~l~~s~-----~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~~------- 101 (189)
T 2l8b_A 34 PRTAGYSDAVSVLAQDR-----PSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDER------- 101 (189)
T ss_dssp CCHHHHHHHHHHHHHHS-----CCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTTT-------
T ss_pred ccCccchhHHHHHhccC-----CceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhcC-------
Confidence 34578999999988642 3557889999999998854443332 2468999999999876654322211
Q ss_pred CcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccccchhhHHHHhh--hcCCceEEEe
Q 003260 360 DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIAS--FKISVDVLTL 437 (835)
Q Consensus 360 gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~g~~~~e~l~~--l~~~~~vL~l 437 (835)
+. | -+++.+..+.....|..=+++|||||-.++.+..-.|.. ...+.++|++
T Consensus 102 -l~----------------------~---~t~t~~~ll~~~~~~tp~s~lIVD~AekLS~kE~~~Lld~A~~~naqvvll 155 (189)
T 2l8b_A 102 -LS----------------------G---ELITGRRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLIT 155 (189)
T ss_dssp -CS----------------------S---CSSSTTTTTTTSCCCCCCCEEEEEESSSHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred -cC----------------------c---ceeehhhhhcCCCCCCCCCEEEEechhhcCHHHHHHHHHHHHhcCCEEEEe
Confidence 11 1 112334444444555666799999999998865544432 3467888876
Q ss_pred ecC
Q 003260 438 SAT 440 (835)
Q Consensus 438 SAT 440 (835)
--+
T Consensus 156 ~~~ 158 (189)
T 2l8b_A 156 DSG 158 (189)
T ss_dssp ESS
T ss_pred CCc
Confidence 544
No 184
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=92.07 E-value=0.019 Score=55.89 Aligned_cols=77 Identities=12% Similarity=0.178 Sum_probs=63.5
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
.+.+++|.++++.-+..+++.+... ++.+..++|+.+..++...++.+.+|+.+|+|+| ..+...+++.++++|
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gid~~~~~~V 102 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-DVAARGIDIPDVSHV 102 (170)
Confidence 3568999999999888888777653 6789999999999999999999999999999999 556666777777777
Q ss_pred EEc
Q 003260 410 VVD 412 (835)
Q Consensus 410 VID 412 (835)
|.-
T Consensus 103 i~~ 105 (170)
T 2yjt_D 103 FNF 105 (170)
Confidence 653
No 185
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.91 E-value=0.41 Score=52.17 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=18.1
Q ss_pred CCCcEEEEccCCCcccHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a 323 (835)
.+..+|++||+|+|||..+-..
T Consensus 116 ~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 4678999999999999876433
No 186
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.78 E-value=0.38 Score=51.76 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhh-hcCCCCCcEEEEccCCCcccHHHHHH
Q 003260 286 QKKAFLDVERDL-TERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 286 Q~~AI~~il~dl-~~~~~~~d~Ll~a~TGsGKT~val~a 323 (835)
|..++..+.+.+ ..+..+. ++++||.|+|||..+-..
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~l 56 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMAL 56 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTH
T ss_pred CHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHH
Confidence 566666666544 3322334 999999999999876433
No 187
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.75 E-value=0.19 Score=49.59 Aligned_cols=55 Identities=20% Similarity=0.182 Sum_probs=33.7
Q ss_pred CHhHHHHHHHHHHhhhcCC---CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEE
Q 003260 283 TPDQKKAFLDVERDLTERE---TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 283 tp~Q~~AI~~il~dl~~~~---~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVL 337 (835)
.+.|.+++..+.+-+.... .+..++++||+|+|||..+...+-.....+..++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 31 DDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp SHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3466666665554332221 127899999999999988654444444445555544
No 188
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.71 E-value=0.97 Score=47.87 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=17.5
Q ss_pred CCCCcEEEEccCCCcccHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val 321 (835)
..+..++++||+|+|||..+-
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHH
Confidence 345779999999999998764
No 189
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=92.69 E-value=0.43 Score=53.34 Aligned_cols=74 Identities=15% Similarity=0.225 Sum_probs=64.7
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEE
Q 003260 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVV 411 (835)
Q Consensus 332 ~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVI 411 (835)
.+++|.++++.-|..+++.+.+. ++.+..++|..+..++...++.+.+|+.+|+|+|. .+...+++.++++||.
T Consensus 301 ~~~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-v~~rGlDi~~v~~VI~ 374 (434)
T 2db3_A 301 DGTIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-VASRGLDIKNIKHVIN 374 (434)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-GGTSSCCCTTCCEEEE
T ss_pred CCEEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-hhhCCCCcccCCEEEE
Confidence 34999999999999998888763 68899999999999999999999999999999996 5556778888888875
No 190
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=92.65 E-value=0.33 Score=55.43 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=64.6
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCC--------CC---
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRF--------QS--- 371 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~--------~s--- 371 (835)
+....+.|-||||||.+....+. ..++.++|++|+...|.|+++.++..+.. .|.++... ..
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~~---~~~~p~lvv~~~~~~A~~l~~~l~~~~~~----~v~~fp~~e~lpyd~~~p~~~ 86 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIAE---RHAGPVVLIAPDMQNALRLHDEISQFTDQ----MVMNLADWETLPYDSFSPHQD 86 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHHH---HSSSCEEEEESSHHHHHHHHHHHHHTCSS----CEEECCCCCSCTTCSSCCCHH
T ss_pred CCeEEEeCCCchHHHHHHHHHHH---HhCCCEEEEeCCHHHHHHHHHHHHhhCCC----cEEEEeCcccccccccCCChH
Confidence 35678999999999976433322 23567999999999999999999874322 25444332 11
Q ss_pred -HHHHHHHHHhhhcCCcceeeccHHHhhcccc
Q 003260 372 -KAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV 402 (835)
Q Consensus 372 -~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~ 402 (835)
..+|-..+..+..++..|||+|...+...+.
T Consensus 87 ~~~~Rl~~l~~L~~~~~~ivv~sv~al~~~~~ 118 (483)
T 3hjh_A 87 IISSRLSTLYQLPTMQRGVLIVPVNTLMQRVC 118 (483)
T ss_dssp HHHHHHHHHHHGGGCCSSEEEEEHHHHHBCCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEHHHHhhcCC
Confidence 1345556677777878899999988876543
No 191
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.64 E-value=0.31 Score=56.06 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=22.3
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
+..+|++||+|+|||..+-..+- .+ +..++.+-
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~-~l--~~~~i~in 109 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQ-EL--GYDILEQN 109 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH-HT--TCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-Hc--CCCEEEEe
Confidence 46899999999999987644332 22 44555443
No 192
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=92.62 E-value=0.27 Score=53.86 Aligned_cols=78 Identities=13% Similarity=0.184 Sum_probs=66.6
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
...+++|.++++.-+...++.+.+. ++.+..++|..+..++...++.+.+|+.+|+|+|. .+...+++.++++|
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidi~~v~~V 348 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-VWARGLDVPQVSLI 348 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-GGSSSCCCTTEEEE
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-hhhCcCCcccCCEE
Confidence 3568999999999999988888763 67899999999999999999999999999999995 55667788888888
Q ss_pred EEcC
Q 003260 410 VVDE 413 (835)
Q Consensus 410 VIDE 413 (835)
|.-.
T Consensus 349 i~~~ 352 (410)
T 2j0s_A 349 INYD 352 (410)
T ss_dssp EESS
T ss_pred EEEC
Confidence 8633
No 193
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.58 E-value=0.28 Score=51.71 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
|..++..+.+.+.. .+...++++||.|+|||..+...+
T Consensus 26 ~~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKt~la~~l~ 63 (323)
T 1sxj_B 26 NKETIDRLQQIAKD-GNMPHMIISGMPGIGKTTSVHCLA 63 (323)
T ss_dssp CTHHHHHHHHHHHS-CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CCCCeEEEECcCCCCHHHHHHHHH
Confidence 44444444444433 333349999999999998764443
No 194
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=92.57 E-value=0.31 Score=57.15 Aligned_cols=76 Identities=11% Similarity=0.130 Sum_probs=66.1
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
.+.++||.++++.-+.++++.+.+. |+.+..++++.+..++....+.+.+|+.+|+|+|. .+...+++.++++|
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-a~~~GID~p~V~~V 339 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL-----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-AFGMGIDKPDVRFV 339 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-TSCTTCCCSCEEEE
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-hhhcCCCcccccEE
Confidence 4689999999999999999988763 68899999999999999999999999999999995 44556777888888
Q ss_pred EE
Q 003260 410 VV 411 (835)
Q Consensus 410 VI 411 (835)
|.
T Consensus 340 I~ 341 (591)
T 2v1x_A 340 IH 341 (591)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 195
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.56 E-value=0.24 Score=52.90 Aligned_cols=21 Identities=43% Similarity=0.469 Sum_probs=17.5
Q ss_pred CCCCcEEEEccCCCcccHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val 321 (835)
..+..+++.|++|+|||.++-
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHH
Confidence 346789999999999998763
No 196
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.91 E-value=1.1 Score=54.59 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHH
Q 003260 288 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 288 ~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l 325 (835)
..+..+.+-+. ...+.+++++||+|+|||..+-..+-
T Consensus 177 ~~i~~l~~~l~-~~~~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 177 EEIRRVIQILL-RRTKNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp HHHHHHHHHHH-CSSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCCCCceEEEcCCCCCHHHHHHHHHH
Confidence 33444443332 34456899999999999987654443
No 197
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.85 E-value=0.98 Score=48.50 Aligned_cols=20 Identities=30% Similarity=0.262 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCcccHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~ 322 (835)
++.+|++||+|+|||..+-.
T Consensus 45 ~~~iLL~GppGtGKT~la~a 64 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKA 64 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHH
Confidence 46799999999999987643
No 198
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.80 E-value=0.44 Score=50.96 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHH
Q 003260 287 KKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 287 ~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val 321 (835)
..++..+...+. .....++++.||+|+|||..+-
T Consensus 43 ~~~~~~l~~~l~-~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 43 DHAVTVLKKTLK-SANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CTTHHHHHHHTT-CTTCCCEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCCEEEEECCCCCCHHHHHH
Confidence 334444444442 2323459999999999998764
No 199
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=91.67 E-value=0.39 Score=55.32 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=66.2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
.+.+++|.++++.-+..+++.+.+. |+.+..++++.+..++....+.+.+|+.+|+|+|. .+...+++.++++|
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-a~~~GiD~p~v~~V 308 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSK-----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-AFGMGINKPNVRFV 308 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-TSCTTTCCTTCCEE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-hhhCCCCccCccEE
Confidence 5678999999999999999988763 68899999999999999999999999999999996 44556778888888
Q ss_pred EE
Q 003260 410 VV 411 (835)
Q Consensus 410 VI 411 (835)
|.
T Consensus 309 I~ 310 (523)
T 1oyw_A 309 VH 310 (523)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 200
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.46 E-value=1.2 Score=50.76 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=17.8
Q ss_pred CCCCcEEEEccCCCcccHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val 321 (835)
..+..+|+.||+|+|||.++-
T Consensus 236 ~~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHH
Confidence 456789999999999998763
No 201
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=91.26 E-value=0.52 Score=49.55 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=73.0
Q ss_pred CCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcC-Cccee
Q 003260 312 VGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG-HLNII 390 (835)
Q Consensus 312 TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G-~~dII 390 (835)
..+||.......+......+.+++|.+.++..+..+...+...+ |+.+..++|..+..++...++.+.++ .+.|+
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~ 168 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIISKFQNNPSVKFI 168 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHH----CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEE
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhc----CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEE
Confidence 46889776555554555678899999999998888888777643 56788899999999999999999988 67765
Q ss_pred eccHHHhhcccccCCccEEEE
Q 003260 391 VGTHSLLGSRVVYNNLGLLVV 411 (835)
Q Consensus 391 VgT~~~L~~~l~~~~l~llVI 411 (835)
+.+.......+++...+.||+
T Consensus 169 L~st~~~g~Glnl~~a~~VI~ 189 (271)
T 1z5z_A 169 VLSVKAGGFGINLTSANRVIH 189 (271)
T ss_dssp EEECCTTCCCCCCTTCSEEEE
T ss_pred EEehhhhcCCcCcccCCEEEE
Confidence 555566666667777776665
No 202
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.22 E-value=0.35 Score=53.29 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=68.6
Q ss_pred HhcCCeEEEEecCccChHHHHHHHHhhCC-CCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCc-----CCcCCCCCC
Q 003260 489 LDRGGQVFYVLPRIKGLEEPMDFLQQAFP-GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-----VESGLDIQN 562 (835)
Q Consensus 489 l~~ggqvlVf~n~v~~~e~l~~~L~~~~p-~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~i-----ie~GIDIp~ 562 (835)
...+++++|++|+++-+..+++.++...+ ++++..+||+.+..++...+..+..|..+|+|+|+- +.. ++..+
T Consensus 61 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~ 139 (414)
T 3oiy_A 61 ARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKR 139 (414)
T ss_dssp HTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCC
T ss_pred hcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hcccc
Confidence 35788999999999999999999988654 789999999999988888999999999999999972 222 55667
Q ss_pred ccEEEEecC
Q 003260 563 ANTIIVQDV 571 (835)
Q Consensus 563 v~~VIi~d~ 571 (835)
+++||+..+
T Consensus 140 ~~~iViDEa 148 (414)
T 3oiy_A 140 FDFVFVDDV 148 (414)
T ss_dssp CSEEEESCH
T ss_pred ccEEEEeCh
Confidence 888887666
No 203
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.52 E-value=1 Score=49.20 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=26.6
Q ss_pred CHhHHHHHHHHH-HhhhcC--CCCCcEEE--EccCCCcccHHHHHH
Q 003260 283 TPDQKKAFLDVE-RDLTER--ETPMDRLI--CGDVGFGKTEVALRA 323 (835)
Q Consensus 283 tp~Q~~AI~~il-~dl~~~--~~~~d~Ll--~a~TGsGKT~val~a 323 (835)
+..+.+.+...+ .....+ ..+..++| +|+.|+|||..+-..
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~ 72 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFT 72 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHH
Confidence 445556665555 433233 34567888 999999999876443
No 204
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.08 E-value=1.4 Score=49.51 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=16.9
Q ss_pred CCCcEEEEccCCCcccHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val 321 (835)
.++.+|++||+|+|||..+-
T Consensus 166 ~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35789999999999998764
No 205
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.93 E-value=0.39 Score=51.71 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=30.7
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcC------CCEEEEEcccH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSA------GKQAMVLAPTI 341 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~------g~qvlVLvPtr 341 (835)
+.+.-++|.|++|+|||..++..+...... +..++++.-..
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 346778999999999999887777665443 56788876543
No 206
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=89.88 E-value=0.31 Score=55.60 Aligned_cols=99 Identities=15% Similarity=0.056 Sum_probs=44.7
Q ss_pred CCCcccHHHHHHHHHHH--cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEE--------EEecCCCCHHHHHHHHHh
Q 003260 312 VGFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKV--------GLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 312 TGsGKT~val~a~l~~l--~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V--------~~l~g~~s~~e~~~~l~~ 381 (835)
..++|-......+.... ..+.++||.++++..+..+++.+.+ ...++++++ ..++++.+..++...++.
T Consensus 369 ~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~ 447 (556)
T 4a2p_A 369 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEE-NPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDA 447 (556)
T ss_dssp SCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTT-CSGGGSCCEEC------------------------
T ss_pred CCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHh-CCCcceeeeeEEEccCCcccccccCHHHHHHHHHH
Confidence 45778665544443433 5678999999999999988888765 221222333 344556788889999999
Q ss_pred hhc-CCcceeeccHHHhhcccccCCccEEEEc
Q 003260 382 IKH-GHLNIIVGTHSLLGSRVVYNNLGLLVVD 412 (835)
Q Consensus 382 l~~-G~~dIIVgT~~~L~~~l~~~~l~llVID 412 (835)
+.+ |+++|+|+| ..+...+++.++++||.=
T Consensus 448 F~~~g~~~vLvaT-~~~~~GiDip~v~~VI~~ 478 (556)
T 4a2p_A 448 FKTSKDNRLLIAT-SVADEGIDIVQCNLVVLY 478 (556)
T ss_dssp ------CCEEEEE-C-----------CEEEEE
T ss_pred hcccCceEEEEEc-CchhcCCCchhCCEEEEe
Confidence 999 999999999 456667788888888763
No 207
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.80 E-value=0.43 Score=57.41 Aligned_cols=19 Identities=42% Similarity=0.656 Sum_probs=16.2
Q ss_pred cEEEEccCCCcccHHHHHH
Q 003260 305 DRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~a 323 (835)
.++++||+|+|||.++-..
T Consensus 490 ~~ll~G~~GtGKT~la~~l 508 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQL 508 (758)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 6899999999999887443
No 208
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.75 E-value=0.79 Score=51.89 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=18.1
Q ss_pred CCCCcEEEEccCCCcccHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~ 322 (835)
..++.+|+.||+|+|||+.+-.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkA 262 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARA 262 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHH
Confidence 4468899999999999987643
No 209
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=89.70 E-value=0.32 Score=53.14 Aligned_cols=39 Identities=31% Similarity=0.239 Sum_probs=31.9
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEccc
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 340 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPt 340 (835)
.+.-++|.|++|+|||..++..+......+..++++.-.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 467789999999999999888877777777788887644
No 210
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.61 E-value=0.32 Score=53.53 Aligned_cols=41 Identities=22% Similarity=0.135 Sum_probs=32.7
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 341 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr 341 (835)
+.+.-++|.|++|+|||..++..+......+..|+|+....
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 34667899999999999998887777766777888886543
No 211
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.48 E-value=0.28 Score=53.76 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=32.7
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEccc
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 340 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPt 340 (835)
+.+.-++|.|++|+|||..++..+......+..|+++...
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3467789999999999999988877777777788888754
No 212
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=89.24 E-value=0.52 Score=53.51 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=54.7
Q ss_pred CCcccHHHHHHHHHHH--cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEec--------CCCCHHHHHHHHHhh
Q 003260 313 GFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLS--------RFQSKAEKEEHLDMI 382 (835)
Q Consensus 313 GsGKT~val~a~l~~l--~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~--------g~~s~~e~~~~l~~l 382 (835)
.++|.......+.... ..+.++||.++++.-+..+++.+.. .+...++.+..++ ++.+..++...++.+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 447 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEE-NPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAF 447 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHH-CGGGTTCCEEECCC----------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhh-CcCcCceeeeEEEecCCcccccccCHHHHHHHHHHH
Confidence 4677655443333332 3458999999999999999998876 3322224444444 477788899999999
Q ss_pred hc-CCcceeeccHHHhhcccccCCccEEEE
Q 003260 383 KH-GHLNIIVGTHSLLGSRVVYNNLGLLVV 411 (835)
Q Consensus 383 ~~-G~~dIIVgT~~~L~~~l~~~~l~llVI 411 (835)
.+ |+++|+|+| ..+...+++.++++||.
T Consensus 448 ~~~g~~~vLvaT-~~~~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 448 RASGDNNILIAT-SVADEGIDIAECNLVIL 476 (555)
T ss_dssp ----CCSEEEEC-CCTTCCEETTSCSEEEE
T ss_pred hcCCCeeEEEEc-chhhcCCccccCCEEEE
Confidence 98 999999999 45666778888888876
No 213
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.07 E-value=9.8 Score=43.50 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=27.5
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcc
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvP 339 (835)
+..++++|.+|+|||..+...+......|.+++++..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4568889999999999876665555556777877764
No 214
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.06 E-value=1.2 Score=53.46 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHH
Q 003260 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 285 ~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
-|...+..+.+.+. ...+.+++++||+|+|||.++-..+
T Consensus 190 Gr~~~i~~l~~~l~-~~~~~~vlL~G~~GtGKT~la~~la 228 (758)
T 1r6b_X 190 GREKELERAIQVLC-RRRKNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_dssp SCHHHHHHHHHHHT-SSSSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-ccCCCCeEEEcCCCCCHHHHHHHHH
Confidence 34455555555443 3467889999999999998864433
No 215
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=88.95 E-value=0.29 Score=53.44 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=57.5
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
.+.+++|.++++.-+..+++.+.+. ++.+..+++..+..++...++.+.+|+.+|+|+|. .+...+++.++++|
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidip~v~~V 352 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHAR-----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-LLARGIDVQQVSLV 352 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHTT-----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-SCC--CCGGGCSCE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHhc-----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-ccccCCCccCCCEE
Confidence 4568999999999999988888753 67899999999999999999999999999999995 44455677788887
Q ss_pred EEc
Q 003260 410 VVD 412 (835)
Q Consensus 410 VID 412 (835)
|.-
T Consensus 353 i~~ 355 (414)
T 3eiq_A 353 INY 355 (414)
T ss_dssp EES
T ss_pred EEe
Confidence 753
No 216
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=88.59 E-value=1 Score=50.75 Aligned_cols=44 Identities=23% Similarity=0.148 Sum_probs=31.5
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcC-CCEEEEEc--ccHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLA--PTIVLAKQ 346 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~-g~qvlVLv--Ptr~LA~Q 346 (835)
+..++++|+.|+|||.++...+...... |++|+++. |.+..+..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ 146 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIK 146 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHH
Confidence 4567889999999999987666665566 88888765 44444433
No 217
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.50 E-value=0.93 Score=51.12 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=39.0
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc-CCCEEEEEcccHHHHHHHHHHH
Q 003260 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 289 AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~-~g~qvlVLvPtr~LA~Q~~~~~ 351 (835)
.++.+..++ ..+.-++|.|++|+|||..++..+..... .|..|+++...-. ..|+..++
T Consensus 192 ~LD~~~gGl---~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s-~~~l~~r~ 251 (454)
T 2r6a_A 192 ELDRMTSGF---QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS-AQQLVMRM 251 (454)
T ss_dssp HHHHHHSSB---CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC-HHHHHHHH
T ss_pred HHHhhcCCC---CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC-HHHHHHHH
Confidence 456665433 34667899999999999988777666554 4667888764322 23444444
No 218
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=88.50 E-value=0.26 Score=58.33 Aligned_cols=79 Identities=14% Similarity=0.261 Sum_probs=60.6
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHh--hcCCCCcEEEEecCC--------CCHHHHHHHHHhhhcCCcceeeccHHHhhcc
Q 003260 331 GKQAMVLAPTIVLAKQHFDVVSER--FSKYPDIKVGLLSRF--------QSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 400 (835)
Q Consensus 331 g~qvlVLvPtr~LA~Q~~~~~~~~--f~~~~gi~V~~l~g~--------~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~ 400 (835)
+.++||.++++..+..+++.+.+. +.. .|+++..++|. .+..++...++.+.+|+.+|+|+|. .+...
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~-~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-~~~~G 477 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAE-VGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-VAEEG 477 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-SCCTT
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccc-cCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-ccccC
Confidence 689999999999999999888763 222 26889999998 9999999999999999999999994 55566
Q ss_pred cccCCccEEEE
Q 003260 401 VVYNNLGLLVV 411 (835)
Q Consensus 401 l~~~~l~llVI 411 (835)
+++.++++||.
T Consensus 478 IDip~v~~VI~ 488 (699)
T 4gl2_A 478 LDIKECNIVIR 488 (699)
T ss_dssp SCCCSCCCCEE
T ss_pred CccccCCEEEE
Confidence 78888888874
No 219
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.35 E-value=0.45 Score=52.17 Aligned_cols=43 Identities=28% Similarity=0.192 Sum_probs=32.8
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLA 344 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA 344 (835)
.+.-++|.||+|+|||..++..+......+..|+++.....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~ 102 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD 102 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc
Confidence 4567889999999999988777766666677888887654443
No 220
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=87.91 E-value=1.8 Score=51.39 Aligned_cols=88 Identities=15% Similarity=0.083 Sum_probs=68.7
Q ss_pred HHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcC-CC------------------------------CcEEEEecCCCC
Q 003260 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK-YP------------------------------DIKVGLLSRFQS 371 (835)
Q Consensus 323 a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~-~~------------------------------gi~V~~l~g~~s 371 (835)
.+...+..+.+++|.+|++.-+...+..+.+.+.. +. ...+..++++.+
T Consensus 244 ~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~ 323 (715)
T 2va8_A 244 YTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLS 323 (715)
T ss_dssp HHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSC
T ss_pred HHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCC
Confidence 33445567899999999999999999888865432 00 124889999999
Q ss_pred HHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEE
Q 003260 372 KAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVV 411 (835)
Q Consensus 372 ~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVI 411 (835)
..++....+.+.+|..+|+|+| ..+...+++.++.+||-
T Consensus 324 ~~~r~~v~~~f~~g~~~vlvaT-~~l~~Gidip~~~~VI~ 362 (715)
T 2va8_A 324 KALRDLIEEGFRQRKIKVIVAT-PTLAAGVNLPARTVIIG 362 (715)
T ss_dssp HHHHHHHHHHHHTTCSCEEEEC-GGGGGSSCCCBSEEEEC
T ss_pred HHHHHHHHHHHHcCCCeEEEEC-hHHhcccCCCceEEEEe
Confidence 9999999999999999999999 45556677888777554
No 221
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=87.70 E-value=0.8 Score=48.94 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=26.4
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHH-cCCCEEEEE
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVL 337 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l-~~g~qvlVL 337 (835)
+.++++.||+|+|||..+...+.... ..+..++++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 57899999999999988765555555 566666654
No 222
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.45 E-value=0.38 Score=52.02 Aligned_cols=44 Identities=7% Similarity=0.072 Sum_probs=34.1
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcC--CCEEEEEcccHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAK 345 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~--g~qvlVLvPtr~LA~ 345 (835)
+++ -++|.||+|+|||..++..+...... +..++++.....+..
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH
Confidence 345 58999999999999998887776654 778999877665543
No 223
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=87.34 E-value=0.89 Score=54.25 Aligned_cols=89 Identities=11% Similarity=0.106 Sum_probs=68.2
Q ss_pred HHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCC----------------------------CcEEEEecCCCCHHHHH
Q 003260 325 FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP----------------------------DIKVGLLSRFQSKAEKE 376 (835)
Q Consensus 325 l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~----------------------------gi~V~~l~g~~s~~e~~ 376 (835)
...+..+.+++|.+|++.-+...+..+.+.+..+. ...++.++++.+..++.
T Consensus 231 ~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~ 310 (720)
T 2zj8_A 231 YDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERV 310 (720)
T ss_dssp HHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred HHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHH
Confidence 33456789999999999999999888876533210 12389999999999999
Q ss_pred HHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCcc
Q 003260 377 EHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 377 ~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaH 415 (835)
...+.+.+|..+|+|+| ..+...+++.+..+ |||..+
T Consensus 311 ~v~~~f~~g~~~vlvaT-~~l~~Gvdip~~~~-VI~~~~ 347 (720)
T 2zj8_A 311 LVEENFRKGIIKAVVAT-PTLSAGINTPAFRV-IIRDIW 347 (720)
T ss_dssp HHHHHHHTTSSCEEEEC-STTGGGCCCCBSEE-EECCSE
T ss_pred HHHHHHHCCCCeEEEEC-cHhhccCCCCceEE-EEcCCe
Confidence 99999999999999999 45555677777765 555433
No 224
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=87.25 E-value=1 Score=48.87 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=30.3
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHc------CCCEEEEEcccH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVS------AGKQAMVLAPTI 341 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~------~g~qvlVLvPtr 341 (835)
+.+.-++|.|++|+|||..++..+..... .+..++++.-..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 44667899999999999988777665433 366788876543
No 225
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=87.20 E-value=0.96 Score=56.11 Aligned_cols=97 Identities=12% Similarity=0.091 Sum_probs=77.2
Q ss_pred CCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCC--cce
Q 003260 312 VGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH--LNI 389 (835)
Q Consensus 312 TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~--~dI 389 (835)
..+.|... +..++.. ..+.+++|.++++.-+..+...+.+.+ |+++..++|..+..++...+..+.+|+ ++|
T Consensus 486 ~~~~K~~~-L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~----g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~v 559 (968)
T 3dmq_A 486 NFDPRVEW-LMGYLTS-HRSQKVLVICAKAATALQLEQVLRERE----GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQV 559 (968)
T ss_dssp TTSHHHHH-HHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTT----CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEE
T ss_pred CccHHHHH-HHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccE
Confidence 34455443 3333333 457899999999998888877776432 688999999999999999999999998 999
Q ss_pred eeccHHHhhcccccCCccEEEEcCcc
Q 003260 390 IVGTHSLLGSRVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 390 IVgT~~~L~~~l~~~~l~llVIDEaH 415 (835)
+|+| ..+...+++.++++||+-+..
T Consensus 560 LvaT-~v~~~GlDl~~~~~VI~~d~p 584 (968)
T 3dmq_A 560 LLCS-EIGSEGRNFQFASHMVMFDLP 584 (968)
T ss_dssp EECS-CCTTCSSCCTTCCEEECSSCC
T ss_pred EEec-chhhcCCCcccCcEEEEecCC
Confidence 9999 777778889999999987776
No 226
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=87.15 E-value=2.9 Score=47.56 Aligned_cols=19 Identities=42% Similarity=0.539 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCcccHHHH
Q 003260 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val 321 (835)
+..++++||+|+|||..+-
T Consensus 49 p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4669999999999998763
No 227
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=87.01 E-value=0.92 Score=47.73 Aligned_cols=75 Identities=9% Similarity=0.127 Sum_probs=60.1
Q ss_pred cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccE
Q 003260 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 408 (835)
Q Consensus 329 ~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~l 408 (835)
..+.+++|.++++.-+..+++.+. .+..+++..+..++...++.+.+|+.+|+|+|. .+...+++.++++
T Consensus 218 ~~~~~~lvf~~~~~~~~~l~~~l~---------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~Gid~~~~~~ 287 (337)
T 2z0m_A 218 NKDKGVIVFVRTRNRVAKLVRLFD---------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-VASRGLDIPLVEK 287 (337)
T ss_dssp CCCSSEEEECSCHHHHHHHHTTCT---------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-HHHTTCCCCCBSE
T ss_pred CCCCcEEEEEcCHHHHHHHHHHhh---------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-ccccCCCccCCCE
Confidence 356789999999987776544332 467889999999999999999999999999995 5566778888888
Q ss_pred EEEcC
Q 003260 409 LVVDE 413 (835)
Q Consensus 409 lVIDE 413 (835)
||.-.
T Consensus 288 Vi~~~ 292 (337)
T 2z0m_A 288 VINFD 292 (337)
T ss_dssp EEESS
T ss_pred EEEec
Confidence 88643
No 228
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=86.84 E-value=1.3 Score=50.16 Aligned_cols=100 Identities=13% Similarity=0.159 Sum_probs=74.9
Q ss_pred CCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcC-Cccee
Q 003260 312 VGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG-HLNII 390 (835)
Q Consensus 312 TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G-~~dII 390 (835)
..++|.......+......+.+++|.+.++..+..+.+.+...+ |..+..++|..+..++...++.+.+| .+.++
T Consensus 322 ~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~----~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vi 397 (500)
T 1z63_A 322 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIISKFQNNPSVKFI 397 (500)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHH----TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCC
T ss_pred hcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhh----CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEE
Confidence 45778766555555556678899999999999888888877643 46788899999999999999999888 56655
Q ss_pred eccHHHhhcccccCCccEEEEcCcc
Q 003260 391 VGTHSLLGSRVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 391 VgT~~~L~~~l~~~~l~llVIDEaH 415 (835)
+.+...+...+++...+.||+=+..
T Consensus 398 l~st~~~~~Glnl~~~~~vi~~d~~ 422 (500)
T 1z63_A 398 VLSVKAGGFGINLTSANRVIHFDRW 422 (500)
T ss_dssp EEECCCC-CCCCCTTCSEEEESSCC
T ss_pred EEecccccCCCchhhCCEEEEeCCC
Confidence 5555566666778888888875544
No 229
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=86.82 E-value=0.72 Score=55.81 Aligned_cols=81 Identities=6% Similarity=0.024 Sum_probs=65.5
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhc------CCCCcEEEEecCCCCHHHHHHHHHhhh-----cCCcceeeccHHHhh
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFS------KYPDIKVGLLSRFQSKAEKEEHLDMIK-----HGHLNIIVGTHSLLG 398 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~------~~~gi~V~~l~g~~s~~e~~~~l~~l~-----~G~~dIIVgT~~~L~ 398 (835)
.+.++||.+|++.-+.+.++.+.+.+. ...++.+..++++.+..++...++... +|..+|||+|. .+.
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~-iae 380 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN-IAE 380 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-HHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-HHH
Confidence 478999999999999999888875321 224789999999999999988888888 89999999995 445
Q ss_pred cccccCCccEEEE
Q 003260 399 SRVVYNNLGLLVV 411 (835)
Q Consensus 399 ~~l~~~~l~llVI 411 (835)
..+++.++.+||-
T Consensus 381 ~GidIp~v~~VId 393 (773)
T 2xau_A 381 TSLTIDGIVYVVD 393 (773)
T ss_dssp HTCCCTTEEEEEE
T ss_pred hCcCcCCeEEEEe
Confidence 5677778887663
No 230
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.61 E-value=0.87 Score=45.80 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=26.5
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHc------CCCEEEEEcc
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVS------AGKQAMVLAP 339 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~------~g~qvlVLvP 339 (835)
.+.-++|.||+|+|||..+...+..... .+..++++.-
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 4677899999999999987666554332 2456676643
No 231
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=86.55 E-value=2.3 Score=47.70 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=31.3
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc--ccHHHHHHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA--PTIVLAKQHFDVVS 352 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv--Ptr~LA~Q~~~~~~ 352 (835)
+.-++++|+.|+|||..+...+......+.+|+++. +.+..+..+...+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~ 149 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLG 149 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhc
Confidence 455778899999999887655544445577777664 44444443333333
No 232
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.33 E-value=0.73 Score=60.80 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=36.5
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 343 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~L 343 (835)
+++..++++||+|+|||..++..+..+...|.+++++.....+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 1467 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccccc
Confidence 4678999999999999999988888888888899998876443
No 233
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=86.31 E-value=2 Score=54.09 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=69.3
Q ss_pred HHHhcCCeEEEEecCccChHHHHHHHHhhC-CCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCc-----CCcCCCC
Q 003260 487 YELDRGGQVFYVLPRIKGLEEPMDFLQQAF-PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-----VESGLDI 560 (835)
Q Consensus 487 ~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~-p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~i-----ie~GIDI 560 (835)
..+..+.+++|++|+++-+.++++.++... .++++..+||+++..++...+..+.+|..+|+|+|+- +.. ++.
T Consensus 116 ~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~ 194 (1104)
T 4ddu_A 116 WLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQ 194 (1104)
T ss_dssp HHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHT
T ss_pred HHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcc
Confidence 334678899999999999999999998843 3679999999999988889999999999999999972 222 556
Q ss_pred CCccEEEEecC
Q 003260 561 QNANTIIVQDV 571 (835)
Q Consensus 561 p~v~~VIi~d~ 571 (835)
.++.+||+..+
T Consensus 195 ~~l~~lViDEa 205 (1104)
T 4ddu_A 195 KRFDFVFVDDV 205 (1104)
T ss_dssp SCCSEEEESCH
T ss_pred cCcCEEEEeCC
Confidence 78899988666
No 234
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=86.30 E-value=0.83 Score=55.30 Aligned_cols=99 Identities=13% Similarity=0.029 Sum_probs=47.6
Q ss_pred CCCcccHHHHHHHHHHH--cCCCEEEEEcccHHHHHHHHHHHHHhhcCCC--------CcEEEEecCCCCHHHHHHHHHh
Q 003260 312 VGFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYP--------DIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 312 TGsGKT~val~a~l~~l--~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~--------gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
..++|-......+.... ..+.++||.++++..+..+++.+.+ ...+. |..+..++++.+..++...++.
T Consensus 610 ~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~-~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~ 688 (797)
T 4a2q_A 610 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEE-NPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDA 688 (797)
T ss_dssp CCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHT-CSTTCSCCCEEC-----------------------
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHh-CcccccccceEEEecCCcccCCCCCHHHHHHHHHH
Confidence 35778665444443322 4568999999999999999888875 22222 3334444566788899999999
Q ss_pred hhc-CCcceeeccHHHhhcccccCCccEEEEc
Q 003260 382 IKH-GHLNIIVGTHSLLGSRVVYNNLGLLVVD 412 (835)
Q Consensus 382 l~~-G~~dIIVgT~~~L~~~l~~~~l~llVID 412 (835)
+.+ |.++|+|+| ..+...+++.++++||.=
T Consensus 689 F~~~g~~~vLVaT-~~~~~GIDlp~v~~VI~y 719 (797)
T 4a2q_A 689 FKTSKDNRLLIAT-SVADEGIDIVQCNLVVLY 719 (797)
T ss_dssp -----CCSEEEEE-CC-------CCCSEEEEE
T ss_pred hhccCCceEEEEc-CchhcCCCchhCCEEEEe
Confidence 998 999999999 456667788888888863
No 235
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=86.06 E-value=2.8 Score=44.85 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=24.4
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
+.-++++|++|+|||+.+...+......+++|+++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 455778999999999886544433334566666654
No 236
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=85.98 E-value=1.5 Score=49.36 Aligned_cols=60 Identities=17% Similarity=0.057 Sum_probs=39.4
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHc-CCCEEEEEcccHHHHHHHHHHHH
Q 003260 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 289 AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~-~g~qvlVLvPtr~LA~Q~~~~~~ 352 (835)
.++.++.++ ..+.-++|+|++|+|||..++..+..... .|..|+++...-. ..|+..++.
T Consensus 189 ~LD~~lgGl---~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~ 249 (444)
T 2q6t_A 189 ELDQLIGTL---GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMM 249 (444)
T ss_dssp HHHHHHCCC---CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHH
T ss_pred hhhhhcCCc---CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHH
Confidence 455555333 34566789999999999988877776664 4677888764322 335555543
No 237
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=85.96 E-value=0.15 Score=57.67 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEE
Q 003260 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llV 410 (835)
+.+++|.+|++.-+..+++.+... +..+..++++.+..++...++.+.+|+.+|+|+|. .+...+++.++.+||
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-~~~~GlDip~v~~VI 406 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-VCARGIDVEQVSVVI 406 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC-----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-ccccCCccccCCEEE
Confidence 468999999999888888877653 67899999999999999999999999999999994 555667888888876
No 238
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=85.90 E-value=4 Score=49.36 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=70.3
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcc--ee
Q 003260 313 GFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN--II 390 (835)
Q Consensus 313 GsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~d--II 390 (835)
.|||-.+....+......|.++||.+..+..+.-+...+... |+.+..++|..+..++...+..+.++..+ ++
T Consensus 554 ~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~-----g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~ 628 (800)
T 3mwy_W 554 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK-----GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVF 628 (800)
T ss_dssp TCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHH-----TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCE
T ss_pred cChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEE
Confidence 467755444333344456789999999998888877777653 68899999999999999999999886555 56
Q ss_pred eccHHHhhcccccCCccEEEEc
Q 003260 391 VGTHSLLGSRVVYNNLGLLVVD 412 (835)
Q Consensus 391 VgT~~~L~~~l~~~~l~llVID 412 (835)
+.+.......+++...+.||+=
T Consensus 629 LlSt~agg~GlNL~~a~~VI~~ 650 (800)
T 3mwy_W 629 LLSTRAGGLGINLMTADTVVIF 650 (800)
T ss_dssp EEEHHHHTTTCCCTTCCEEEES
T ss_pred EEecccccCCCCccccceEEEe
Confidence 6666777767777777766653
No 239
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=85.84 E-value=0.91 Score=53.61 Aligned_cols=97 Identities=18% Similarity=0.147 Sum_probs=51.8
Q ss_pred CCcccHHHHHHHHHHH--cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEec--------CCCCHHHHHHHHHhh
Q 003260 313 GFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLS--------RFQSKAEKEEHLDMI 382 (835)
Q Consensus 313 GsGKT~val~a~l~~l--~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~--------g~~s~~e~~~~l~~l 382 (835)
.+.|.......+.... ..+.++||.++++.-+..+++.+.. .+.+.++++..++ ++.+..++...++.+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~-~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F 456 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEG-NPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 456 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHH-CTTCCSCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHh-CCCccccceeEEEccCCCccccCCCHHHHHHHHHHH
Confidence 3456544333332222 2567899999999999999998886 3333347777775 477888889999999
Q ss_pred hc-CCcceeeccHHHhhcccccCCccEEEE
Q 003260 383 KH-GHLNIIVGTHSLLGSRVVYNNLGLLVV 411 (835)
Q Consensus 383 ~~-G~~dIIVgT~~~L~~~l~~~~l~llVI 411 (835)
.+ |+.+|+|+| ..+...+++.++++||.
T Consensus 457 ~~~g~~~vLVaT-~v~~~GiDip~v~~VI~ 485 (696)
T 2ykg_A 457 KASGDHNILIAT-SVADEGIDIAQCNLVIL 485 (696)
T ss_dssp ----CCSCSEEE-ESSCCC---CCCSEEEE
T ss_pred HhcCCccEEEEe-chhhcCCcCccCCEEEE
Confidence 98 999999999 45556678888888885
No 240
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=85.79 E-value=0.55 Score=47.34 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=35.2
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~ 352 (835)
.+.-+++.|++|+|||..++..+......+..++++.-.. -..+..+++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHH
Confidence 4567899999999999998777766666677788776432 2344444443
No 241
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=85.52 E-value=1.7 Score=51.58 Aligned_cols=88 Identities=16% Similarity=0.123 Sum_probs=67.0
Q ss_pred HHHHHHcCCCEEEEEcccHHHHHHHHHHHHHhhcCCC-------------------------CcEEEEecCCCCHHHHHH
Q 003260 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP-------------------------DIKVGLLSRFQSKAEKEE 377 (835)
Q Consensus 323 a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~-------------------------gi~V~~l~g~~s~~e~~~ 377 (835)
.+...+..+.+++|.+|++.-+...+..+.+.+..+. +..+..++++.+..++..
T Consensus 234 ~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 313 (702)
T 2p6r_A 234 LVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRV 313 (702)
T ss_dssp HHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHH
T ss_pred HHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHH
Confidence 3344556789999999999999998888876533210 124778999999999999
Q ss_pred HHHhhhcCCcceeeccHHHhhcccccCCccEEEE
Q 003260 378 HLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVV 411 (835)
Q Consensus 378 ~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVI 411 (835)
..+.+.+|..+|+|+|. .+...+++.+..+||-
T Consensus 314 v~~~f~~g~~~vlvaT~-~l~~Gidip~~~~VI~ 346 (702)
T 2p6r_A 314 VEDAFRRGNIKVVVATP-TLAAGVNLPARRVIVR 346 (702)
T ss_dssp HHHHHHTTSCCEEEECS-TTTSSSCCCBSEEEEC
T ss_pred HHHHHHCCCCeEEEECc-HHhccCCCCceEEEEc
Confidence 99999999999999996 4445567777766443
No 242
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=85.30 E-value=0.55 Score=52.76 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=50.3
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
.+.+++|.+|++.-+..+++.+++. ++++..++|. ++...+..+.+|+.+|+|+|. .+...+++. +++|
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~----~R~~~~~~F~~g~~~vLVaT~-v~e~GiDip-v~~V 244 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRK----TFEREYPTIKQKKPDFILATD-IAEMGANLC-VERV 244 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSS----SCC--------CCCSEEEESS-STTCCTTCC-CSEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecch----hHHHHHhhhcCCCceEEEECC-hhheeeccC-ceEE
Confidence 4789999999999999999988863 6789999983 455677888899999999994 455556777 7776
Q ss_pred EE
Q 003260 410 VV 411 (835)
Q Consensus 410 VI 411 (835)
|.
T Consensus 245 I~ 246 (440)
T 1yks_A 245 LD 246 (440)
T ss_dssp EE
T ss_pred Ee
Confidence 63
No 243
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=85.22 E-value=1.2 Score=43.58 Aligned_cols=78 Identities=12% Similarity=0.167 Sum_probs=59.1
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcC-----cCC-cCCCCCCcc
Q 003260 491 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVE-SGLDIQNAN 564 (835)
Q Consensus 491 ~ggqvlVf~n~v~~~e~l~~~L~~~~p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~-----iie-~GIDIp~v~ 564 (835)
.+.+++|++|++.-+..+++.+....++.++..++|+.+.......+. ...+|+|+|. .+. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 357899999999999999999999988889999999887544433332 2578999996 222 346778888
Q ss_pred EEEEecCC
Q 003260 565 TIIVQDVQ 572 (835)
Q Consensus 565 ~VIi~d~p 572 (835)
+||+..++
T Consensus 147 ~iViDEah 154 (207)
T 2gxq_A 147 VAVLDEAD 154 (207)
T ss_dssp EEEEESHH
T ss_pred EEEEEChh
Confidence 88876655
No 244
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=84.52 E-value=1 Score=48.13 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=25.6
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHH
Q 003260 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 289 AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
.++.++.+ .-+.+.-++|.|++|+|||..++..+...
T Consensus 86 ~LD~~l~G--Gl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 86 ELDSVLGG--GLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHTTS--SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCC--CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555531 11346678999999999999887776653
No 245
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=84.27 E-value=1.4 Score=52.30 Aligned_cols=71 Identities=8% Similarity=0.170 Sum_probs=57.3
Q ss_pred cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccE
Q 003260 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 408 (835)
Q Consensus 329 ~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~l 408 (835)
..+.+++|.+|++.-+..+++.+.+. ++++..++|. ++...++.+.+|+.+|+|+| ..+...+++. +++
T Consensus 408 ~~~~~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaT-dv~e~GIDip-v~~ 476 (673)
T 2wv9_A 408 DYAGKTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRK----SYDTEYPKCKNGDWDFVITT-DISEMGANFG-ASR 476 (673)
T ss_dssp SCCSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSS----SHHHHGGGGGTCCCSEEEEC-GGGGTTCCCC-CSE
T ss_pred hCCCCEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChH----HHHHHHHHHHCCCceEEEEC-chhhcceeeC-CcE
Confidence 35789999999999999988888753 6889999983 67778899999999999999 4555556666 666
Q ss_pred EE
Q 003260 409 LV 410 (835)
Q Consensus 409 lV 410 (835)
||
T Consensus 477 VI 478 (673)
T 2wv9_A 477 VI 478 (673)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 246
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=83.91 E-value=1.5 Score=46.78 Aligned_cols=62 Identities=13% Similarity=0.056 Sum_probs=42.3
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHHh
Q 003260 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSER 354 (835)
Q Consensus 289 AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~~ 354 (835)
.++.++.++ ..+.-++|+|++|+|||..++..+......+..|+++... .-..|+..++...
T Consensus 57 ~LD~~lgGl---~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 57 ELDRMTYGY---KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp HHHHHHSSB---CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-SCHHHHHHHHHHH
T ss_pred HHHhhcCCC---CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHHHHH
Confidence 344444333 3456789999999999998888777777777788888644 3344555555543
No 247
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=83.50 E-value=0.74 Score=51.67 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=60.6
Q ss_pred cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccE
Q 003260 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 408 (835)
Q Consensus 329 ~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~l 408 (835)
..+.+++|.++++..+..+++.+. +..+++..+..++...++.+.+|+++|+|+| ..+...+++.++++
T Consensus 347 ~~~~k~lvF~~~~~~~~~l~~~l~----------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T-~~~~~Gldlp~~~~ 415 (472)
T 2fwr_A 347 HRKDKIIIFTRHNELVYRISKVFL----------IPAITHRTSREEREEILEGFRTGRFRAIVSS-QVLDEGIDVPDANV 415 (472)
T ss_dssp TSSSCBCCBCSCHHHHHHHHHHTT----------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCS-SCCCSSSCSCCBSE
T ss_pred CCCCcEEEEECCHHHHHHHHHHhC----------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEc-CchhcCcccccCcE
Confidence 457899999999987776655431 3457788888899999999999999999999 77778888999998
Q ss_pred EEEcCc
Q 003260 409 LVVDEE 414 (835)
Q Consensus 409 lVIDEa 414 (835)
||+=..
T Consensus 416 Vi~~~~ 421 (472)
T 2fwr_A 416 GVIMSG 421 (472)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887443
No 248
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=83.29 E-value=1.3 Score=54.84 Aligned_cols=100 Identities=15% Similarity=0.068 Sum_probs=49.8
Q ss_pred CCcccHHHHHHHHHHH--cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcE--------EEEecCCCCHHHHHHHHHhh
Q 003260 313 GFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIK--------VGLLSRFQSKAEKEEHLDMI 382 (835)
Q Consensus 313 GsGKT~val~a~l~~l--~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~--------V~~l~g~~s~~e~~~~l~~l 382 (835)
.++|.......+.... ..+.++||.++++..+..+.+.+.+. ..+++++ ...++++.+..++...++.+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~-~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~F 689 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEEN-PILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHC-STTSSCCCEEC------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhC-ccccccceeEEecCCCcccCCCCCHHHHHHHHHHh
Confidence 4677655443333322 34689999999999999999988863 2222333 34445667888999999999
Q ss_pred hc-CCcceeeccHHHhhcccccCCccEEEEcCc
Q 003260 383 KH-GHLNIIVGTHSLLGSRVVYNNLGLLVVDEE 414 (835)
Q Consensus 383 ~~-G~~dIIVgT~~~L~~~l~~~~l~llVIDEa 414 (835)
.+ |.++|+|+|. .+...+++.++++||.=+.
T Consensus 690 r~~g~~~VLVaT~-~~~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 690 KTSKDNRLLIATS-VADEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp ----CCSEEEEEC-C------CCCCSEEEEESC
T ss_pred hccCCeeEEEEeC-chhcCCcchhCCEEEEeCC
Confidence 98 9999999994 5556678888998886433
No 249
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=83.23 E-value=3.5 Score=43.79 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=25.2
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
+.-++++|+.|+|||..+...+......+.+++++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 445778899999999887555544445577776654
No 250
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=82.92 E-value=0.5 Score=47.73 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=33.3
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHH-cCCCEEEEEcccHHHHHHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l-~~g~qvlVLvPtr~LA~Q~~~~~~ 352 (835)
.+.-++|+|++|+|||..++..+.... ..+..++++.-.. -..++.+++.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~-~~~~~~~~~~ 79 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE-RARDLRREMA 79 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS-CHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC-CHHHHHHHHH
Confidence 456789999999999998877666543 3356677765432 2445444444
No 251
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=81.68 E-value=2.5 Score=47.19 Aligned_cols=69 Identities=12% Similarity=0.076 Sum_probs=54.1
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
.+.+++|++|++.-+..+++.+.+. +.++..++|. ++...+..+.+|+.+|+|+|. .+...+++. ...|
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~-v~e~GiDip-~~~V 238 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRK----TFESEYPKCKSEKWDFVITTD-ISEMGANFK-ADRV 238 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTT----THHHHTTHHHHSCCSEEEECG-GGGTSCCCC-CSEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECc-hHHcCcccC-CcEE
Confidence 3678999999999999999888763 5789999985 466688889999999999995 444455554 4444
No 252
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=81.26 E-value=3 Score=41.30 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=58.8
Q ss_pred CCeEEEEecCccChHHHHHHHHhhC---CCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCc-----C-CcCCCCCC
Q 003260 492 GGQVFYVLPRIKGLEEPMDFLQQAF---PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-----V-ESGLDIQN 562 (835)
Q Consensus 492 ggqvlVf~n~v~~~e~l~~~L~~~~---p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~i-----i-e~GIDIp~ 562 (835)
+.+++|++|+++-++.+++.++... |+.++..++|+.+....... +.++..+|+|+|.- + ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 3489999999988888888777654 57899999999886655433 44567799999961 1 23467888
Q ss_pred ccEEEEecCCC
Q 003260 563 ANTIIVQDVQQ 573 (835)
Q Consensus 563 v~~VIi~d~p~ 573 (835)
+++||+..++.
T Consensus 159 ~~~lViDEah~ 169 (220)
T 1t6n_A 159 IKHFILDECDK 169 (220)
T ss_dssp CCEEEEESHHH
T ss_pred CCEEEEcCHHH
Confidence 88888776653
No 253
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=81.22 E-value=1.1 Score=49.81 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=33.5
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 345 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~ 345 (835)
..+++|.|+||||||......+...+..|..++|+=|..++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 3679999999999999754444455667888999989887754
No 254
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=80.55 E-value=6.5 Score=42.39 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=23.4
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEE
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVL 337 (835)
+.|.-+.++||+|+|||...-..+......++.+++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~ 163 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA 163 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 4567788999999999987533222222345555554
No 255
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=80.42 E-value=1.1 Score=46.75 Aligned_cols=21 Identities=52% Similarity=0.800 Sum_probs=17.6
Q ss_pred CCCcEEEEccCCCcccHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~ 322 (835)
.+..++++||+|+|||..+-.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~ 69 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARR 69 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 467899999999999987643
No 256
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=80.23 E-value=0.36 Score=55.26 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=55.6
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
.+.+++|.++++.-|..++..+.+. +..+..++++.+..++...++.+.+|+.+|+|+|. .+...+++.++++|
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~~-----~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-~l~~GiDip~v~~V 429 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTAD-----GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-VIARGIDVSQVNLV 429 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTTT-----TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC------CCCTTCCEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-hhhcCCCccCCCEE
Confidence 4578999999999888877777542 67889999988888888888999999999999995 66667888889988
Q ss_pred EEc
Q 003260 410 VVD 412 (835)
Q Consensus 410 VID 412 (835)
|..
T Consensus 430 I~~ 432 (508)
T 3fho_A 430 VNY 432 (508)
T ss_dssp EC-
T ss_pred EEE
Confidence 853
No 257
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=80.08 E-value=0.35 Score=52.36 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=0.0
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEE
Q 003260 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llV 410 (835)
+.+++|.++++.-+...++.+.+. +..+..+++..+..++...++.+.+|+.+|+|+|. .+...+++.++++||
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~Gldi~~~~~Vi 332 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-LLARGIDVQQVSLVI 332 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc-----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC-hhhcCCCcccCCEEE
Confidence 568999999999888887777653 67899999999889999999999999999999995 455566777777776
Q ss_pred E
Q 003260 411 V 411 (835)
Q Consensus 411 I 411 (835)
.
T Consensus 333 ~ 333 (394)
T 1fuu_A 333 N 333 (394)
T ss_dssp -
T ss_pred E
Confidence 4
No 258
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=80.08 E-value=1.8 Score=52.51 Aligned_cols=19 Identities=42% Similarity=0.588 Sum_probs=16.8
Q ss_pred CCCcEEEEccCCCcccHHH
Q 003260 302 TPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~va 320 (835)
.++.+|+.||+|+|||+.+
T Consensus 237 ~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999876
No 259
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=78.92 E-value=1.4 Score=43.79 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=17.8
Q ss_pred CCCcEEEEccCCCcccHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
.+.-+.|+||+|||||..+...+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35668899999999998764443
No 260
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=78.82 E-value=1.2 Score=44.07 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=25.9
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
.+.-+++.|++|+|||..+...+......+..++++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4567889999999999876555544444455666654
No 261
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=78.59 E-value=3.9 Score=45.84 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=55.1
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
.+.+++|.+|++.-+.++++.+.+. ++.+..+++.. +...++.+.+|+.+|+|+|. .+...+++.+ .+|
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~-v~~~GiDip~-~~V 255 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTD-ISEMGANFRA-GRV 255 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTT----HHHHGGGGGSSCCSEEEECG-GGGSSCCCCC-SEE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHH----HHHHHHhhccCCceEEEECC-HHHhCcCCCC-CEE
Confidence 3668999999999999988888753 67888888853 34678888999999999994 5555677777 665
Q ss_pred E
Q 003260 410 V 410 (835)
Q Consensus 410 V 410 (835)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 262
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=78.34 E-value=7.1 Score=38.82 Aligned_cols=78 Identities=10% Similarity=0.168 Sum_probs=53.4
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhC-CCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcC------cCCcCCCCCCc
Q 003260 491 RGGQVFYVLPRIKGLEEPMDFLQQAF-PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN------IVESGLDIQNA 563 (835)
Q Consensus 491 ~ggqvlVf~n~v~~~e~l~~~L~~~~-p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~------iie~GIDIp~v 563 (835)
.+.+++|++|+++-+..+++.+.... ++..+..++|+.+...+... +. ...+|+|+|+ +....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 56789999999999888888888763 47788999998765443332 22 3478999996 22345678889
Q ss_pred cEEEEecCC
Q 003260 564 NTIIVQDVQ 572 (835)
Q Consensus 564 ~~VIi~d~p 572 (835)
++||+..++
T Consensus 169 ~~lViDEah 177 (228)
T 3iuy_A 169 TYLVIDEAD 177 (228)
T ss_dssp CEEEECCHH
T ss_pred eEEEEECHH
Confidence 988876554
No 263
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=78.34 E-value=4.9 Score=47.74 Aligned_cols=76 Identities=8% Similarity=0.038 Sum_probs=61.8
Q ss_pred EEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhc--CCcceeeccHHHhhcccccCCccEEEEc
Q 003260 335 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH--GHLNIIVGTHSLLGSRVVYNNLGLLVVD 412 (835)
Q Consensus 335 lVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~--G~~dIIVgT~~~L~~~l~~~~l~llVID 412 (835)
+|+++++.-+.++++.+.+. ++.+..++|..+..++..+.+.+.+ |..+|+|+|. .+...+++ ++.+||.-
T Consensus 324 iIf~~s~~~ie~la~~L~~~-----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-i~e~GlDi-~v~~VI~~ 396 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIR-----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-AIGMGLNL-SIRRIIFY 396 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-GGGSSCCC-CBSEEEES
T ss_pred EEEEcCHHHHHHHHHHHHhc-----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-HHHCCcCc-CccEEEEC
Confidence 55588888788888877752 6889999999999999999999998 8899999995 45556778 88988887
Q ss_pred Ccccc
Q 003260 413 EEQRF 417 (835)
Q Consensus 413 EaHr~ 417 (835)
...++
T Consensus 397 ~~~k~ 401 (677)
T 3rc3_A 397 SLIKP 401 (677)
T ss_dssp CSBC-
T ss_pred Ccccc
Confidence 77665
No 264
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=78.31 E-value=6.6 Score=41.49 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=24.4
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
+.-+.++|+.|+|||..+...+......+.+++++-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 455678899999999886544443334566776653
No 265
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=77.36 E-value=2.4 Score=55.19 Aligned_cols=47 Identities=21% Similarity=0.159 Sum_probs=40.7
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~ 347 (835)
++++-+.+.||.|||||..++..+.++...|..++++.+..+|....
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY 1475 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH
Confidence 45677899999999999999998888888899999999988777665
No 266
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=76.93 E-value=2.7 Score=46.99 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=30.5
Q ss_pred CCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-CCEEEEE
Q 003260 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVL 337 (835)
Q Consensus 282 ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-g~qvlVL 337 (835)
..+.+..++..++. ..+.-++|+||||||||... .+++..+.. ...++++
T Consensus 151 ~~~~~~~~L~~l~~-----~~ggii~I~GpnGSGKTTlL-~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 151 MTAHNHDNFRRLIK-----RPHGIILVTGPTGSGKSTTL-YAGLQELNSSERNILTV 201 (418)
T ss_dssp CCHHHHHHHHHHHT-----SSSEEEEEECSTTSCHHHHH-HHHHHHHCCTTSCEEEE
T ss_pred CCHHHHHHHHHHHH-----hcCCeEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEEe
Confidence 45667667766632 23456899999999999763 333444432 3445544
No 267
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=76.41 E-value=2 Score=46.56 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=17.9
Q ss_pred CCCcEEEEccCCCcccHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a 323 (835)
.+..++++||+|+|||.++-..
T Consensus 50 ~~~~vll~GppGtGKT~la~~i 71 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETL 71 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 4578999999999999986433
No 268
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=76.38 E-value=2.1 Score=47.59 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=27.1
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHc------CCCEEEEEcc
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVS------AGKQAMVLAP 339 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~------~g~qvlVLvP 339 (835)
+.+.-++|+||.|+|||..+...+..... .+..++++.-
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 34677899999999999887655444332 2456777754
No 269
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=76.31 E-value=2.7 Score=47.32 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=42.4
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHH
Q 003260 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 289 AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
.++.++.++ .++.-++|.|++|+|||..++..+......|..|+++...- -..|+..++..
T Consensus 186 ~LD~~lgGl---~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm-s~~ql~~R~~~ 246 (444)
T 3bgw_A 186 ELDRMTYGY---KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLIV 246 (444)
T ss_dssp HHHHHHSSB---CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS-CTTHHHHHHHH
T ss_pred HHHhhcCCC---CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC-CHHHHHHHHHH
Confidence 456665444 34567889999999999998888887777788888886542 23344445443
No 270
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=76.23 E-value=2.4 Score=53.08 Aligned_cols=85 Identities=21% Similarity=0.330 Sum_probs=64.1
Q ss_pred HHHHhcCCeEEEEecCccChHHHHHHHHhhCC--CC----eEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcC-cCCcCC
Q 003260 486 KYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP--GV----DIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-IVESGL 558 (835)
Q Consensus 486 ~~~l~~ggqvlVf~n~v~~~e~l~~~L~~~~p--~~----~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~-iie~GI 558 (835)
.....++.+++|++|+++-+.++++.++..++ ++ ++..+||+.+...+....+.+.+ .+|+|+|+ .+..-+
T Consensus 93 ~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l 170 (1054)
T 1gku_B 93 LFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHY 170 (1054)
T ss_dssp HHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCS
T ss_pred HHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHH
Confidence 33345678999999999999888888887654 45 78999999998888878888877 89999997 111111
Q ss_pred C-CCCccEEEEecCC
Q 003260 559 D-IQNANTIIVQDVQ 572 (835)
Q Consensus 559 D-Ip~v~~VIi~d~p 572 (835)
. +.++++||+..++
T Consensus 171 ~~L~~l~~lViDEah 185 (1054)
T 1gku_B 171 RELGHFDFIFVDDVD 185 (1054)
T ss_dssp TTSCCCSEEEESCHH
T ss_pred HHhccCCEEEEeChh
Confidence 1 5678888876654
No 271
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.92 E-value=3.3 Score=46.60 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=18.9
Q ss_pred CCCCcEEEEccCCCcccHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
..++.+|+.||+|+|||..+-..+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA 236 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVA 236 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHH
Confidence 346789999999999998864333
No 272
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=75.80 E-value=2.3 Score=41.16 Aligned_cols=36 Identities=28% Similarity=0.255 Sum_probs=24.7
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEE
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVL 337 (835)
+++.++++|+.|||||.++-..+-..-..+..+.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 467789999999999998754443333345556554
No 273
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=75.77 E-value=2 Score=42.40 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=26.2
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
+.+.-+++.|++|+|||..+...+. ..+..++++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 3466789999999999988765554 3466777765
No 274
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.62 E-value=2.8 Score=47.16 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=18.5
Q ss_pred CCCCcEEEEccCCCcccHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a 323 (835)
+.++.+|+.||+|+|||..+-..
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAi 235 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARAC 235 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHH
Confidence 44678999999999999876433
No 275
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=75.45 E-value=3.4 Score=41.47 Aligned_cols=76 Identities=11% Similarity=0.083 Sum_probs=56.5
Q ss_pred CCeEEEEecCccChHHHHHHHHhhC---CCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCc-----C-CcCCCCCC
Q 003260 492 GGQVFYVLPRIKGLEEPMDFLQQAF---PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-----V-ESGLDIQN 562 (835)
Q Consensus 492 ggqvlVf~n~v~~~e~l~~~L~~~~---p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~i-----i-e~GIDIp~ 562 (835)
+.+++|++|+++-++.+++.++... ++.++..++|+.+..++...+ ...+|+|+|.- + ...+++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 4689999999998888888887764 478899999998876554433 25789999972 1 23467778
Q ss_pred ccEEEEecCC
Q 003260 563 ANTIIVQDVQ 572 (835)
Q Consensus 563 v~~VIi~d~p 572 (835)
+++||+..++
T Consensus 167 ~~~lViDEah 176 (230)
T 2oxc_A 167 IRLFILDEAD 176 (230)
T ss_dssp CCEEEESSHH
T ss_pred CCEEEeCCch
Confidence 8888875554
No 276
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=75.43 E-value=2.4 Score=43.43 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=28.2
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEE
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVL 337 (835)
.++++.++.|+|||..++..+......|..|+++
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~ 40 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG 40 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence 5689999999999999988888777788777543
No 277
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=75.42 E-value=13 Score=42.54 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=23.6
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEE
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVL 337 (835)
.+.-+.|+|++|||||..+-..+......+++|++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 455678999999999987533322222346677765
No 278
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=75.38 E-value=2.4 Score=45.06 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=26.2
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHH-cCCCEEEEEc
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLA 338 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l-~~g~qvlVLv 338 (835)
.+.-++++|++|+|||..+...+.... ..|.+|+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 466788999999999988654444333 4676776653
No 279
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=75.11 E-value=2.4 Score=46.49 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=31.0
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIV 342 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~ 342 (835)
+.+++|+|+||+|||...-..+......+.+++++=|..+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 4679999999999998765555555566788888878754
No 280
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=74.43 E-value=3 Score=40.66 Aligned_cols=77 Identities=12% Similarity=0.213 Sum_probs=55.6
Q ss_pred CCeEEEEecCccChHHHHHHHHhhC---CCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcC-----cCC-cCCCCCC
Q 003260 492 GGQVFYVLPRIKGLEEPMDFLQQAF---PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVE-SGLDIQN 562 (835)
Q Consensus 492 ggqvlVf~n~v~~~e~l~~~L~~~~---p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~-----iie-~GIDIp~ 562 (835)
+.+++|++|+++-++.+++.+.... ++..+..++|+.+..+... .+ .+..+|+|+|+ .+. ..+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 4579999999988888888877654 4678999999987654322 22 34678999997 222 2356778
Q ss_pred ccEEEEecCC
Q 003260 563 ANTIIVQDVQ 572 (835)
Q Consensus 563 v~~VIi~d~p 572 (835)
+++||+..++
T Consensus 147 ~~~lViDEah 156 (206)
T 1vec_A 147 VQMIVLDEAD 156 (206)
T ss_dssp CCEEEEETHH
T ss_pred CCEEEEEChH
Confidence 8888876655
No 281
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=74.33 E-value=5.1 Score=47.03 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=55.8
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
.+.++||.++++.-+..+++.+.+. ++++..+++. ++...++.+.+|+.+|+|+|. .+...+++. +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTd-v~~rGiDi~-v~~V 422 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTD-ISEMGANFR-AGRV 422 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTT----THHHHTTHHHHSCCSEEEECG-GGGTTCCCC-CSEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHc-----CCcEEEEChH----HHHHHHHhhcCCCcEEEEECc-HHHcCcccC-ceEE
Confidence 4678999999999999999988863 6788999873 566788889999999999995 455556664 6665
Q ss_pred E
Q 003260 410 V 410 (835)
Q Consensus 410 V 410 (835)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
No 282
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=73.99 E-value=5.2 Score=40.40 Aligned_cols=78 Identities=10% Similarity=0.169 Sum_probs=56.2
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhC--CCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcC-----cCC-cCCCCCC
Q 003260 491 RGGQVFYVLPRIKGLEEPMDFLQQAF--PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVE-SGLDIQN 562 (835)
Q Consensus 491 ~ggqvlVf~n~v~~~e~l~~~L~~~~--p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~-----iie-~GIDIp~ 562 (835)
.+.+++|++|+++-+..+.+.++... .+..+..++|+.+.......+.. ..+|+|+|+ .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 35679999999988888777766542 36789999999887665544432 478999996 222 3457888
Q ss_pred ccEEEEecCC
Q 003260 563 ANTIIVQDVQ 572 (835)
Q Consensus 563 v~~VIi~d~p 572 (835)
+.+||+..++
T Consensus 177 ~~~lViDEah 186 (242)
T 3fe2_A 177 TTYLVLDEAD 186 (242)
T ss_dssp CCEEEETTHH
T ss_pred ccEEEEeCHH
Confidence 8888875554
No 283
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=73.77 E-value=1.3 Score=41.64 Aligned_cols=20 Identities=40% Similarity=0.306 Sum_probs=16.3
Q ss_pred CcEEEEccCCCcccHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a 323 (835)
|-++++|++|||||.++-..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 45789999999999986433
No 284
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.36 E-value=4.1 Score=45.65 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=18.4
Q ss_pred CCCCcEEEEccCCCcccHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a 323 (835)
..++.+|+.||+|+|||..+-..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAi 226 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAV 226 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHH
Confidence 34677999999999999876433
No 285
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=73.33 E-value=1.6 Score=47.49 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCcccHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a 323 (835)
+.-++|+||||||||..++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 346889999999999876543
No 286
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=72.95 E-value=2 Score=43.00 Aligned_cols=25 Identities=28% Similarity=0.161 Sum_probs=19.7
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~ 327 (835)
.|-.+++|+.|||||..++..+...
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4778999999999999876554443
No 287
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=72.83 E-value=3.7 Score=39.29 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=24.2
Q ss_pred cEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHH
Q 003260 305 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 343 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~L 343 (835)
-++++|+.|||||.++-..+-..-..|..+.++ |+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~-~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII-NYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE-EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE-ECChH
Confidence 478999999999998754443332334445555 54433
No 288
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=72.80 E-value=1.7 Score=46.66 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=17.0
Q ss_pred CCcEEEEccCCCcccHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~ 324 (835)
+.-++|+||||||||..+...+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHH
Confidence 3457889999999998875544
No 289
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=72.72 E-value=3.2 Score=43.17 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=16.5
Q ss_pred CCCCcEEEEccCCCcccHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~va 320 (835)
..+.-++|+||||||||...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 45667899999999999764
No 290
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=72.18 E-value=4.1 Score=41.11 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=50.2
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCC--CCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcC-----cCC-cCCCCCCc
Q 003260 492 GGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVE-SGLDIQNA 563 (835)
Q Consensus 492 ggqvlVf~n~v~~~e~l~~~L~~~~p--~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~-----iie-~GIDIp~v 563 (835)
+.+++|++|+++-+..+++.++.... +..+..++|+.... .....+..+..+|+|+|+ .+. ..+++.++
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 46899999999999998888887653 46788888876533 233455567789999994 333 34677788
Q ss_pred cEEEEecCC
Q 003260 564 NTIIVQDVQ 572 (835)
Q Consensus 564 ~~VIi~d~p 572 (835)
.+||+..++
T Consensus 175 ~~lViDEah 183 (237)
T 3bor_A 175 KMFVLDEAD 183 (237)
T ss_dssp CEEEEESHH
T ss_pred cEEEECCch
Confidence 888876554
No 291
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=72.17 E-value=2.6 Score=44.47 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=18.5
Q ss_pred CCCCcEEEEccCCCcccHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
..+..++++||+|+|||..+-..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA 57 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVF 57 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345778999999999998764433
No 292
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=72.00 E-value=8.9 Score=42.09 Aligned_cols=20 Identities=40% Similarity=0.494 Sum_probs=16.9
Q ss_pred CCCCcEEEEccCCCcccHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~va 320 (835)
....+++++|++|+|||.+|
T Consensus 158 ~~~~~vli~Ge~GtGK~~lA 177 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVA 177 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEecCCCcCHHHHH
Confidence 34578999999999999875
No 293
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=71.91 E-value=1.6 Score=41.75 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCcccHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~ 322 (835)
++-++++|++|||||.++-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 46789999999999988643
No 294
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=71.77 E-value=13 Score=38.15 Aligned_cols=78 Identities=14% Similarity=0.284 Sum_probs=57.3
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCC--CCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcC-----cC--CcCCCCC
Q 003260 491 RGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IV--ESGLDIQ 561 (835)
Q Consensus 491 ~ggqvlVf~n~v~~~e~l~~~L~~~~p--~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~-----ii--e~GIDIp 561 (835)
.+.+++|++|+++-++.+++.++..+. +..+..++|+......... +..+ .+|+|+|+ .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 467899999999999999999888754 4678888998876544333 3333 88999994 22 2357888
Q ss_pred CccEEEEecCC
Q 003260 562 NANTIIVQDVQ 572 (835)
Q Consensus 562 ~v~~VIi~d~p 572 (835)
++.+||+..+.
T Consensus 201 ~l~~lViDEah 211 (262)
T 3ly5_A 201 NLQCLVIDEAD 211 (262)
T ss_dssp TCCEEEECSHH
T ss_pred cCCEEEEcChH
Confidence 89888875554
No 295
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=71.77 E-value=2 Score=41.38 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=18.0
Q ss_pred CCcEEEEccCCCcccHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~ 324 (835)
+..++++|++|||||.++-..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999875544
No 296
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=71.73 E-value=4.1 Score=44.17 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=36.9
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
.+.-++|.|++|+|||..++..+......+..|+|+...- -..|+..++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm-s~~ql~~Rlls 95 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM-SAEQLALRALS 95 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS-CHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CHHHHHHHHHH
Confidence 3456888999999999998877777666788898886542 24455555543
No 297
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=71.47 E-value=2.1 Score=48.22 Aligned_cols=70 Identities=10% Similarity=0.155 Sum_probs=52.5
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
.+.++||.+|++.-+..+++.+... ++.+..+++. ++...+..+.+|+.+|+|+| ..+...+++.+ .+|
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~-----g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT-~v~~~GiDip~-~~V 257 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRA-----GKKVIQLNRK----SYDTEYPKCKNGDWDFVITT-DISEMGANFGA-SRV 257 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHT-----TCCEEEESTT----CCCCCGGGSSSCCCSEEEES-SCC---CCCSC-SEE
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhc-----CCcEEecCHH----HHHHHHhhccCCCceEEEEC-ChHHhCeecCC-CEE
Confidence 3678999999999999998888763 6788899884 44456777888999999999 44555566766 555
Q ss_pred E
Q 003260 410 V 410 (835)
Q Consensus 410 V 410 (835)
|
T Consensus 258 I 258 (459)
T 2z83_A 258 I 258 (459)
T ss_dssp E
T ss_pred E
Confidence 4
No 298
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=71.02 E-value=5.4 Score=39.90 Aligned_cols=77 Identities=14% Similarity=0.287 Sum_probs=53.9
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCC--CCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCc-----CCc--CCCCC
Q 003260 491 RGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-----VES--GLDIQ 561 (835)
Q Consensus 491 ~ggqvlVf~n~v~~~e~l~~~L~~~~p--~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~i-----ie~--GIDIp 561 (835)
.+.+++|++|+++-+..+++.++.... +..+..++|+.+.......+ +..+|+|+|.- +.. .++..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 467899999999999999988888754 47889999987654433322 36789999961 122 36677
Q ss_pred CccEEEEecCC
Q 003260 562 NANTIIVQDVQ 572 (835)
Q Consensus 562 ~v~~VIi~d~p 572 (835)
++++||+..++
T Consensus 171 ~~~~lViDEah 181 (236)
T 2pl3_A 171 DLQMLVLDEAD 181 (236)
T ss_dssp TCCEEEETTHH
T ss_pred cccEEEEeChH
Confidence 78888765554
No 299
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=70.77 E-value=3.5 Score=47.27 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=21.3
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEE
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 336 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlV 336 (835)
+..++|+||||||||... .++...+.....++.
T Consensus 260 g~~i~I~GptGSGKTTlL-~aL~~~i~~~~giit 292 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTL-NAIMMFIPPDAKVVS 292 (511)
T ss_dssp TCCEEEEESTTSSHHHHH-HHHGGGSCTTCCEEE
T ss_pred CCEEEEECCCCCCHHHHH-HHHHhhCCCCCCEEE
Confidence 567999999999999763 334433333333433
No 300
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=70.51 E-value=2.3 Score=45.18 Aligned_cols=33 Identities=21% Similarity=0.067 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val 321 (835)
|..++..+...+.. +.++++.||+|+|||..+-
T Consensus 32 ~~~~~~~l~~~l~~---~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 32 QKYMINRLLIGICT---GGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp CHHHHHHHHHHHHH---TCCEEEESCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHc---CCeEEEECCCCCcHHHHHH
Confidence 44455555444432 4689999999999998764
No 301
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=69.79 E-value=2.4 Score=41.66 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=17.9
Q ss_pred CCcEEEEccCCCcccHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~ 324 (835)
++.++++|++|||||.++-..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 5678999999999999875443
No 302
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=69.50 E-value=3.3 Score=46.86 Aligned_cols=38 Identities=29% Similarity=0.382 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
|...+..+..-+. .....++|++||+|+|||.++-..+
T Consensus 185 r~~~i~~l~~~l~-r~~~~~~LL~G~pG~GKT~la~~la 222 (468)
T 3pxg_A 185 RSKEIQRVIEVLS-RRTKNNPVLIGEPGVGKTAIAEGLA 222 (468)
T ss_dssp CHHHHHHHHHHHH-CSSSCEEEEESCTTTTTHHHHHHHH
T ss_pred cHHHHHHHHHHHh-ccCCCCeEEECCCCCCHHHHHHHHH
Confidence 4444544544442 3456789999999999998864443
No 303
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=69.47 E-value=3.1 Score=43.80 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=17.1
Q ss_pred CCCcEEEEccCCCcccHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~ 322 (835)
.++-++++|++|||||.++-.
T Consensus 32 ~~~livl~G~sGsGKSTla~~ 52 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSA 52 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456789999999999987643
No 304
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=69.22 E-value=3.7 Score=44.56 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=17.7
Q ss_pred CCCcEEEEccCCCcccHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a 323 (835)
.+..++++||+|+|||.++-..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~l 92 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTL 92 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHH
Confidence 3567999999999999886433
No 305
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=69.10 E-value=2.3 Score=42.84 Aligned_cols=21 Identities=48% Similarity=0.703 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCcccHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a 323 (835)
++-++++||||+|||..++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 456899999999999876543
No 306
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=69.06 E-value=12 Score=43.02 Aligned_cols=86 Identities=14% Similarity=0.029 Sum_probs=62.5
Q ss_pred cCCCEEEEEcccHHHHHHHHHHHHHhhcC---CCCcEEEEecCCCCHHHHHHHHHhhhcCCc--ceeeccHHHhhccccc
Q 003260 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSK---YPDIKVGLLSRFQSKAEKEEHLDMIKHGHL--NIIVGTHSLLGSRVVY 403 (835)
Q Consensus 329 ~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~---~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~--dIIVgT~~~L~~~l~~ 403 (835)
..+.+++|.++++.-|..+++.+.+.... ..+-.+..++|..+ .++...++.+.+|+. .+|+.|-..+...+++
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi 515 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDA 515 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccc
Confidence 45689999999999999999998764321 11223667777643 357888899998764 4455555677777889
Q ss_pred CCccEEEEcCcc
Q 003260 404 NNLGLLVVDEEQ 415 (835)
Q Consensus 404 ~~l~llVIDEaH 415 (835)
.++.+||++..-
T Consensus 516 p~v~~Vi~~~~~ 527 (590)
T 3h1t_A 516 PTCKNVVLARVV 527 (590)
T ss_dssp TTEEEEEEESCC
T ss_pred hheeEEEEEecC
Confidence 999999987654
No 307
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=68.60 E-value=2.7 Score=40.77 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=18.4
Q ss_pred CCCCcEEEEccCCCcccHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a 323 (835)
.+++.++++|++|||||.++-..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 34678999999999999986433
No 308
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=68.40 E-value=2.6 Score=41.96 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=18.8
Q ss_pred CCCcEEEEccCCCcccHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
+++.++++|+.|||||.++-..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999875443
No 309
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=68.40 E-value=2.4 Score=42.50 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=17.6
Q ss_pred CCCcEEEEccCCCcccHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a 323 (835)
+++.++++|++|||||.++-..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L 27 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRI 27 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999986443
No 310
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=68.08 E-value=2.9 Score=41.94 Aligned_cols=23 Identities=30% Similarity=0.173 Sum_probs=18.4
Q ss_pred CcEEEEccCCCcccHHHHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~ 326 (835)
|.+++.||+||||++++-..+-.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999987655543
No 311
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=68.07 E-value=4 Score=42.12 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=23.1
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
++-++++|++|||||.++-..+-.....|..++++.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 467899999999999987544332222355555443
No 312
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=68.04 E-value=2.9 Score=41.57 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCCcccHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val 321 (835)
.+.-++++||+|+|||.++-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 45678899999999998753
No 313
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=68.02 E-value=9.9 Score=47.26 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=62.8
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcC-------------------CC----------------CcEEEEecCCCCHHH
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSK-------------------YP----------------DIKVGLLSRFQSKAE 374 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~-------------------~~----------------gi~V~~l~g~~s~~e 374 (835)
.+.+++|.++++.-+.+.+..+.. .+- +. ...|+.++|+.+..+
T Consensus 342 ~~~~~IVF~~sr~~~e~la~~L~~-~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~e 420 (1010)
T 2xgj_A 342 KYNPVIVFSFSKRDCEELALKMSK-LDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPIL 420 (1010)
T ss_dssp TCCSEEEEESSHHHHHHHHHTTTT-SCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHh-CCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHH
Confidence 345899999999988887776643 110 00 012889999999999
Q ss_pred HHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCcccc
Q 003260 375 KEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRF 417 (835)
Q Consensus 375 ~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr~ 417 (835)
+......+.+|.++|+|+|. .+...+++.+..+ ||+-...|
T Consensus 421 R~~ve~~F~~G~ikVLVAT~-~la~GIDiP~~~v-VI~~~~kf 461 (1010)
T 2xgj_A 421 KEVIEILFQEGFLKVLFATE-TFSIGLNMPAKTV-VFTSVRKW 461 (1010)
T ss_dssp HHHHHHHHHTTCCSEEEEEG-GGGGSTTCCBSEE-EESCSEEE
T ss_pred HHHHHHHHhcCCCcEEEEeh-HhhccCCCCCceE-EEeCCccc
Confidence 99999999999999999994 5556677777766 55544444
No 314
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=68.01 E-value=2.9 Score=40.91 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=19.4
Q ss_pred CCCCcEEEEccCCCcccHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
..++.++++|+.|||||.++-..+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 457889999999999999875443
No 315
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=67.99 E-value=5.7 Score=44.61 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=18.0
Q ss_pred CCCcEEEEccCCCcccHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a 323 (835)
.++.+|+.||+|+|||..+-..
T Consensus 62 ~~~~iLl~GppGtGKT~la~al 83 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAI 83 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHHHH
Confidence 3478999999999999887433
No 316
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=67.97 E-value=5.1 Score=43.78 Aligned_cols=20 Identities=40% Similarity=0.473 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCcccHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val 321 (835)
....+++.|++|+||+.++-
T Consensus 151 ~~~~vli~GesGtGKe~lAr 170 (368)
T 3dzd_A 151 SKAPVLITGESGTGKEIVAR 170 (368)
T ss_dssp SCSCEEEECCTTSSHHHHHH
T ss_pred cchhheEEeCCCchHHHHHH
Confidence 35679999999999998763
No 317
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=67.89 E-value=4.4 Score=42.32 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=26.5
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcC-CCEEEEEc
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLA 338 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-g~qvlVLv 338 (835)
..+.-++|.|++|+|||..+...+...... |..++++.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 446678899999999998875555444333 55676664
No 318
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=67.69 E-value=4 Score=43.81 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=24.5
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEE
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVL 337 (835)
+.-++++|+.|+|||..+...+......+++|+++
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45578899999999988654444333457777765
No 319
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=67.62 E-value=21 Score=41.89 Aligned_cols=97 Identities=11% Similarity=0.038 Sum_probs=68.7
Q ss_pred CCCcccHHHHHHHHHHH--cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcc-
Q 003260 312 VGFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN- 388 (835)
Q Consensus 312 TGsGKT~val~a~l~~l--~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~d- 388 (835)
.-|||-.+. ..++..+ ..+.+++|.+..+..+..+...+... |+.+..++|..+..++...++.+.+|...
T Consensus 396 ~~s~K~~~l-~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~-----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~ 469 (644)
T 1z3i_X 396 QLSGKMLVL-DYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR-----RYLYVRLDGTMSIKKRAKIVERFNNPSSPE 469 (644)
T ss_dssp GGSHHHHHH-HHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH-----TCCEEEECSSCCHHHHHHHHHHHHSTTCCC
T ss_pred ccChHHHHH-HHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHC-----CCCEEEEeCCCCHHHHHHHHHHhcCCCCCc
Confidence 347886543 2333333 35789999999998888777766653 68899999999999999999999988654
Q ss_pred -eeeccHHHhhcccccCCccEEEEcCc
Q 003260 389 -IIVGTHSLLGSRVVYNNLGLLVVDEE 414 (835)
Q Consensus 389 -IIVgT~~~L~~~l~~~~l~llVIDEa 414 (835)
+++.+.......+++...+.||+=+.
T Consensus 470 ~v~L~st~a~g~Glnl~~a~~Vi~~d~ 496 (644)
T 1z3i_X 470 FIFMLSSKAGGCGLNLIGANRLVMFDP 496 (644)
T ss_dssp CEEEEEGGGSCTTCCCTTEEEEEECSC
T ss_pred EEEEEecccccCCcccccCCEEEEECC
Confidence 44444455555667777777666443
No 320
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=67.49 E-value=3 Score=42.80 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=17.8
Q ss_pred CCCCcEEEEccCCCcccHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~ 322 (835)
..++.++++|++|||||.++-.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHH
Confidence 4467789999999999988643
No 321
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=67.47 E-value=2.4 Score=43.70 Aligned_cols=18 Identities=39% Similarity=0.529 Sum_probs=14.7
Q ss_pred cEEEEccCCCcccHHHHH
Q 003260 305 DRLICGDVGFGKTEVALR 322 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~ 322 (835)
-++|+|++|||||..+..
T Consensus 3 li~I~G~~GSGKSTla~~ 20 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQ 20 (253)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 468999999999987643
No 322
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=67.14 E-value=3.3 Score=46.48 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=27.0
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
+..++++|++|+|||..+...+......|.+|+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 457889999999999987655555445577777765
No 323
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.09 E-value=5.7 Score=44.50 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=18.8
Q ss_pred CCCCcEEEEccCCCcccHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
..++.+|+.||+|+|||..+-..+
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA 237 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVA 237 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHH
Confidence 446789999999999998764333
No 324
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=66.60 E-value=3.6 Score=41.27 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=18.0
Q ss_pred CCCcEEEEccCCCcccHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
.+.-+.|.||+|||||..+...+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 46678999999999998764443
No 325
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=66.40 E-value=3.1 Score=43.35 Aligned_cols=19 Identities=37% Similarity=0.385 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCcccHHHH
Q 003260 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val 321 (835)
+..+++.||+|+|||..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5789999999999998764
No 326
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=66.18 E-value=3 Score=39.94 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=17.8
Q ss_pred CCcEEEEccCCCcccHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~ 324 (835)
++-++++|+.|||||.++-..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999864443
No 327
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=66.16 E-value=2.8 Score=41.40 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=16.9
Q ss_pred CcEEEEccCCCcccHHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~ 324 (835)
|.++|+|+.|||||.++-..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999875443
No 328
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=66.15 E-value=2.7 Score=45.27 Aligned_cols=21 Identities=24% Similarity=0.234 Sum_probs=16.5
Q ss_pred CcEEEEccCCCcccHHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~ 324 (835)
.-++|+||||||||..+...+
T Consensus 4 ~~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHH
Confidence 347889999999998875443
No 329
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=66.15 E-value=3.1 Score=47.59 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCcccHHHH
Q 003260 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val 321 (835)
+.+++++||+|+|||..+-
T Consensus 41 ~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp TCEEEEECCSSSSHHHHHH
T ss_pred CCeeEeecCchHHHHHHHH
Confidence 4689999999999998753
No 330
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=66.14 E-value=3.2 Score=40.14 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCcccHHHH
Q 003260 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val 321 (835)
+.-++|+||+|||||..+-
T Consensus 5 g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4568899999999998753
No 331
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=66.13 E-value=7.1 Score=39.54 Aligned_cols=77 Identities=9% Similarity=0.080 Sum_probs=55.0
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCC--CCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCc-----C-CcCCCCCCc
Q 003260 492 GGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-----V-ESGLDIQNA 563 (835)
Q Consensus 492 ggqvlVf~n~v~~~e~l~~~L~~~~p--~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~i-----i-e~GIDIp~v 563 (835)
+.+++|++|+++-+..+++.++.... +..+..++|+.+....... + ....+|+|+|+- + ...+++.++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 46899999999988888888776542 4678889998765443322 2 246789999971 1 234677888
Q ss_pred cEEEEecCC
Q 003260 564 NTIIVQDVQ 572 (835)
Q Consensus 564 ~~VIi~d~p 572 (835)
++||+..++
T Consensus 176 ~~lViDEah 184 (253)
T 1wrb_A 176 KYIVLDEAD 184 (253)
T ss_dssp CEEEEETHH
T ss_pred CEEEEeCHH
Confidence 888876665
No 332
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=65.97 E-value=5 Score=38.39 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=16.9
Q ss_pred CCCcEEEEccCCCcccHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val 321 (835)
+++-++++|+.|||||.++-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46778999999999998863
No 333
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=65.96 E-value=5.9 Score=39.90 Aligned_cols=79 Identities=15% Similarity=0.266 Sum_probs=53.5
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCC--CCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcC-----cCCc---CCCC
Q 003260 491 RGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVES---GLDI 560 (835)
Q Consensus 491 ~ggqvlVf~n~v~~~e~l~~~L~~~~p--~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~-----iie~---GIDI 560 (835)
.+.+++|++|+++-+..+++.+..... +..+..++|+.... ........+..+|+|+|+ .+.. .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA---KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH---TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH---HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 345899999999999999988888754 45677777653211 112223355789999995 1212 5788
Q ss_pred CCccEEEEecCC
Q 003260 561 QNANTIIVQDVQ 572 (835)
Q Consensus 561 p~v~~VIi~d~p 572 (835)
.++.+||+..++
T Consensus 174 ~~~~~lViDEah 185 (245)
T 3dkp_A 174 ASVEWLVVDESD 185 (245)
T ss_dssp TTCCEEEESSHH
T ss_pred ccCcEEEEeChH
Confidence 889988876554
No 334
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=65.87 E-value=5.6 Score=38.92 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=22.6
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEE
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM 335 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvl 335 (835)
+++-++++|+.|||||.++-..+-..-..+..+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~ 41 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE 41 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 4678999999999999987444332222344443
No 335
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=65.82 E-value=2.9 Score=41.38 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=16.5
Q ss_pred CcEEEEccCCCcccHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a 323 (835)
|.++|+|+.|||||.++-..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999987443
No 336
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=65.74 E-value=4.4 Score=40.98 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHH
Q 003260 287 KKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 287 ~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~ 322 (835)
..++..+++. -++...+++.||+|+|||..+..
T Consensus 45 ~~~l~~~~~~---iPkkn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 45 LGALKSFLKG---TPKKNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp HHHHHHHHHT---CTTCSEEEEESCGGGCHHHHHHH
T ss_pred HHHHHHHHhc---CCcccEEEEECCCCCCHHHHHHH
Confidence 4445555542 23445689999999999987643
No 337
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=65.70 E-value=2.8 Score=39.76 Aligned_cols=20 Identities=30% Similarity=0.119 Sum_probs=16.1
Q ss_pred CcEEEEccCCCcccHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a 323 (835)
+-++++|++|||||.++-..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L 22 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREF 22 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHH
Confidence 45789999999999986433
No 338
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=65.56 E-value=5.7 Score=42.29 Aligned_cols=37 Identities=27% Similarity=0.222 Sum_probs=23.4
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
.+.-+.++||+|||||...-..+...-..++++++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4567888999999998875333322223455666553
No 339
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=65.54 E-value=8 Score=39.42 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=56.0
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCC--CCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcC-----cC--CcCCCCCC
Q 003260 492 GGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IV--ESGLDIQN 562 (835)
Q Consensus 492 ggqvlVf~n~v~~~e~l~~~L~~~~p--~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~-----ii--e~GIDIp~ 562 (835)
+.+++|++|+++-+..+++.++.... +..+..++|+.+.......+ .+..+|+|+|+ .+ ..++++.+
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 45799999999888888877766532 67889999998765544333 24689999996 12 24577888
Q ss_pred ccEEEEecCC
Q 003260 563 ANTIIVQDVQ 572 (835)
Q Consensus 563 v~~VIi~d~p 572 (835)
+++||+..+.
T Consensus 187 ~~~lViDEah 196 (249)
T 3ber_A 187 LKYLVMDEAD 196 (249)
T ss_dssp CCEEEECSHH
T ss_pred cCEEEEcChh
Confidence 8888876554
No 340
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=65.50 E-value=2.7 Score=45.38 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=16.7
Q ss_pred CcEEEEccCCCcccHHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~ 324 (835)
+.++|+||||||||..+...+
T Consensus 6 ~~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 358899999999998765443
No 341
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=65.34 E-value=4.2 Score=48.83 Aligned_cols=39 Identities=28% Similarity=0.350 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l 325 (835)
|...+..+..-+. ...+.++|++||+|+|||.++-..+.
T Consensus 185 ~~~~i~~l~~~l~-~~~~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 185 RSKEIQRVIEVLS-RRTKNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CHHHHHHHHHHHH-CSSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred chHHHHHHHHHHh-CCCCCCeEEECCCCCCHHHHHHHHHH
Confidence 4555555555442 35567899999999999998744433
No 342
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=65.04 E-value=3.5 Score=42.10 Aligned_cols=19 Identities=42% Similarity=0.543 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCcccHHHH
Q 003260 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val 321 (835)
+..++++||+|+|||..+-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4569999999999998763
No 343
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=64.97 E-value=3.1 Score=40.08 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=17.8
Q ss_pred CCCcEEEEccCCCcccHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a 323 (835)
.++-++++|+.|||||.++-..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3567899999999999986443
No 344
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=64.86 E-value=5.4 Score=38.84 Aligned_cols=34 Identities=18% Similarity=0.117 Sum_probs=21.7
Q ss_pred cEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 305 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
-+.++|+.|||||......+-.....|.++.++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 4678999999999875443332224455555554
No 345
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=64.85 E-value=3.8 Score=51.77 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=39.4
Q ss_pred EEEEccCCCcccHHHHHHHHHHHcC---CCEEEEEcccHHHHHHHHHHHHHhhcCC--CCcEEEEecC
Q 003260 306 RLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLAKQHFDVVSERFSKY--PDIKVGLLSR 368 (835)
Q Consensus 306 ~Ll~a~TGsGKT~val~a~l~~l~~---g~qvlVLvPtr~LA~Q~~~~~~~~f~~~--~gi~V~~l~g 368 (835)
.+|.|..|||||.+.+.-+...+.. +.++++|||... .-+..+++...++.. .++.|..+++
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~-TFt~~~rl~~~l~~~~~~~~~V~TFhs 70 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM-TFLMEYELAKTPDMGGMIRAQVFSFSR 70 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG-HHHHHHHHTCCSSCSEESSEEEECHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc-cHHHHHHHHHhhhhcceeeeEEecHHH
Confidence 4889999999999987666554433 478999999863 333445554443321 2345555443
No 346
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=64.67 E-value=2.7 Score=40.39 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=17.9
Q ss_pred CCcEEEEccCCCcccHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~ 324 (835)
++.++++|+.|||||.++-..+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999999875443
No 347
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=64.61 E-value=7.2 Score=40.38 Aligned_cols=25 Identities=20% Similarity=0.124 Sum_probs=19.8
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~ 326 (835)
.+.-++|.|+.|+|||..+...+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999987665543
No 348
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=64.55 E-value=3.5 Score=41.09 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=18.7
Q ss_pred CCCcEEEEccCCCcccHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
.++.++++|+.|||||.++-..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999875443
No 349
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=64.50 E-value=3.6 Score=40.56 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=17.3
Q ss_pred CCCcEEEEccCCCcccHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~ 322 (835)
.++-++++|++|||||.++-.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~ 31 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKK 31 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHH
Confidence 467899999999999987533
No 350
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=64.48 E-value=3.8 Score=39.23 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=17.8
Q ss_pred CCcEEEEccCCCcccHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~ 324 (835)
+..++++|++|||||.++-..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4679999999999999865443
No 351
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=64.41 E-value=3.7 Score=39.95 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=16.7
Q ss_pred CCCcEEEEccCCCcccHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val 321 (835)
.++-++++|++|||||..+-
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46778999999999998753
No 352
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=64.29 E-value=5.7 Score=38.92 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=18.1
Q ss_pred CCCCcEEEEccCCCcccHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a 323 (835)
..+.-+.++|+.|||||.++-..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~L 45 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACAL 45 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 44677889999999999886433
No 353
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=64.20 E-value=5.8 Score=38.01 Aligned_cols=32 Identities=22% Similarity=0.042 Sum_probs=20.4
Q ss_pred cEEEEccCCCcccHHHHHHHHHHHcCCCEEEE
Q 003260 305 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 336 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlV 336 (835)
-++++|+.|||||.++-..+-..-..|..++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 47899999999999864443322223544443
No 354
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=64.10 E-value=4.5 Score=44.33 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCcccHHH
Q 003260 302 TPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~va 320 (835)
.+..++|+||||||||...
T Consensus 135 ~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSEEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567899999999999764
No 355
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=63.98 E-value=3.4 Score=38.82 Aligned_cols=19 Identities=21% Similarity=0.036 Sum_probs=15.7
Q ss_pred cEEEEccCCCcccHHHHHH
Q 003260 305 DRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~a 323 (835)
-++++|+.|||||.++-..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L 21 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKL 21 (173)
T ss_dssp EEEEECSSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999986443
No 356
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=63.93 E-value=3.4 Score=39.79 Aligned_cols=20 Identities=30% Similarity=0.317 Sum_probs=16.7
Q ss_pred CCCCcEEEEccCCCcccHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~va 320 (835)
..+.-++++|+.|||||..+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34667899999999999875
No 357
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=63.54 E-value=3.7 Score=38.83 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCcccHHHH
Q 003260 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val 321 (835)
++.++|+|+.|||||.++-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4578999999999998763
No 358
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=63.34 E-value=3.3 Score=39.77 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=17.3
Q ss_pred CCcEEEEccCCCcccHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a 323 (835)
++-++++|++|||||.++-..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L 23 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARI 23 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 467899999999999987443
No 359
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=63.22 E-value=3.9 Score=40.16 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=17.0
Q ss_pred CCCCcEEEEccCCCcccHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val 321 (835)
..+.-++|+|+.|||||.++-
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 446778999999999998863
No 360
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=63.11 E-value=6.5 Score=37.83 Aligned_cols=31 Identities=19% Similarity=0.075 Sum_probs=19.9
Q ss_pred cEEEEccCCCcccHHHHHHHHHHHcCCCEEE
Q 003260 305 DRLICGDVGFGKTEVALRAIFCVVSAGKQAM 335 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~a~l~~l~~g~qvl 335 (835)
-+++.|+.|||||.++-...-..-..|..++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 3689999999999987544332223355554
No 361
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=62.87 E-value=3.9 Score=39.42 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=18.3
Q ss_pred CCCcEEEEccCCCcccHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
+++-++++|+.|||||.++-..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999874443
No 362
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=62.87 E-value=4.4 Score=46.06 Aligned_cols=60 Identities=8% Similarity=-0.018 Sum_probs=40.7
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC-CCEEEEEcccHHHHHHHHHHHH
Q 003260 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 289 AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~-g~qvlVLvPtr~LA~Q~~~~~~ 352 (835)
.++.++.++ ..+.-++|.|++|+|||..++..+...... |..|+++.-.-. ..|+..++.
T Consensus 231 ~LD~~lgGl---~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~~ 291 (503)
T 1q57_A 231 GINDKTLGA---RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLI 291 (503)
T ss_dssp THHHHHCCC---CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHHH
T ss_pred hhhHhhccc---CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHHH
Confidence 345555333 446678899999999999988888777665 777888764322 345555553
No 363
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=62.30 E-value=3.9 Score=38.53 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=16.4
Q ss_pred CcEEEEccCCCcccHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a 323 (835)
|.++++|+.|||||.++-..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46899999999999986443
No 364
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=61.97 E-value=3.9 Score=39.03 Aligned_cols=21 Identities=33% Similarity=0.284 Sum_probs=13.5
Q ss_pred CCcEEEEccCCCcccHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a 323 (835)
++-++++|+.|||||.++-..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp CCEEEEECCC----CHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 577899999999999987443
No 365
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=61.93 E-value=3.5 Score=44.80 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=16.1
Q ss_pred cEEEEccCCCcccHHHHHHH
Q 003260 305 DRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~a~ 324 (835)
-++|+||||||||..+...+
T Consensus 9 lI~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHH
Confidence 47899999999998765443
No 366
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=61.85 E-value=4.1 Score=49.64 Aligned_cols=21 Identities=38% Similarity=0.409 Sum_probs=17.0
Q ss_pred CcEEEEccCCCcccHHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~ 324 (835)
..++++||+|+|||.++-..+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la 609 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLA 609 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 378999999999998874443
No 367
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=61.79 E-value=3.8 Score=41.85 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=19.7
Q ss_pred CCCCcEEEEccCCCcccHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
..++.++++|+.|||||.++-..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 357889999999999999875444
No 368
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=61.72 E-value=4.8 Score=39.82 Aligned_cols=22 Identities=18% Similarity=0.287 Sum_probs=17.9
Q ss_pred CCCCcEEEEccCCCcccHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~ 322 (835)
..++-++++|+.|||||.++-.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4467889999999999988643
No 369
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=61.67 E-value=4 Score=43.35 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCcccHHHH
Q 003260 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val 321 (835)
+..+|+.||+|+|||..+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4569999999999998764
No 370
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=61.59 E-value=8.6 Score=48.31 Aligned_cols=80 Identities=11% Similarity=0.034 Sum_probs=58.8
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHh-hcC-------------C--------------------CCcEEEEecCCCCHHHH
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSER-FSK-------------Y--------------------PDIKVGLLSRFQSKAEK 375 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~-f~~-------------~--------------------~gi~V~~l~g~~s~~e~ 375 (835)
.+.+++|.++++.-+.+.+..+... +.. . ....|+.++++.+..++
T Consensus 440 ~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R 519 (1108)
T 3l9o_A 440 KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILK 519 (1108)
T ss_dssp TCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHH
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHH
Confidence 3568999999999888877766431 000 0 00118999999999999
Q ss_pred HHHHHhhhcCCcceeeccHHHhhcccccCCccEEE
Q 003260 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 376 ~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llV 410 (835)
......+.+|.++|+|+|. .+...+++.++.+||
T Consensus 520 ~~v~~~F~~G~ikVLVAT~-vla~GIDiP~v~~VI 553 (1108)
T 3l9o_A 520 EVIEILFQEGFLKVLFATE-TFSIGLNMPAKTVVF 553 (1108)
T ss_dssp HHHHHHHHHTCCCEEEEES-CCCSCCCC--CEEEE
T ss_pred HHHHHHHhCCCCeEEEECc-HHhcCCCCCCceEEE
Confidence 9999999999999999995 455567788888855
No 371
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=61.58 E-value=5.3 Score=44.97 Aligned_cols=20 Identities=50% Similarity=0.762 Sum_probs=17.1
Q ss_pred CCCcEEEEccCCCcccHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val 321 (835)
.+.++|++||+|+|||..+-
T Consensus 49 ~~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHH
Confidence 35789999999999998763
No 372
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=61.51 E-value=7.1 Score=38.13 Aligned_cols=23 Identities=13% Similarity=-0.080 Sum_probs=18.5
Q ss_pred CCCcEEEEccCCCcccHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
.++-++++|+.|||||.++-..+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 36778999999999999874443
No 373
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=61.45 E-value=11 Score=36.90 Aligned_cols=20 Identities=30% Similarity=0.057 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCcccHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val 321 (835)
.+.-+.|+|+.|||||..+-
T Consensus 21 ~~~~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 44567889999999998763
No 374
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=61.13 E-value=13 Score=40.03 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=27.3
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
....++++|++|+|||..+...+......|.+++++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 4457889999999999887655555555677777664
No 375
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=61.06 E-value=3.9 Score=40.54 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=16.9
Q ss_pred CcEEEEccCCCcccHHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~ 324 (835)
|.++++|+.|||||.++-..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999875443
No 376
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=60.95 E-value=4.7 Score=39.19 Aligned_cols=22 Identities=18% Similarity=0.006 Sum_probs=18.0
Q ss_pred CCCcEEEEccCCCcccHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a 323 (835)
+++-++++|+.|||||.++-..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L 24 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNI 24 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 3678999999999999986433
No 377
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=60.95 E-value=4.7 Score=39.21 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCcccHHH
Q 003260 303 PMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~va 320 (835)
+.-+.|.||+|||||..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECcCCCCHHHHH
Confidence 556789999999999875
No 378
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=60.87 E-value=11 Score=47.52 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=43.0
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHHcC-C-----------CEEEEEcccHHHHHHHHHHHHHhhcC
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVVSA-G-----------KQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l~~-g-----------~qvlVLvPtr~LA~Q~~~~~~~~f~~ 357 (835)
...+|.|.-|||||.+...-++..+.. | .++|+|+=|+.-|.++.+++.+++..
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~~ 82 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHE 82 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHHH
Confidence 456999999999999966555555532 1 37999999999999999999887643
No 379
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=60.87 E-value=4.6 Score=40.69 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=19.3
Q ss_pred CCCcEEEEccCCCcccHHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l 325 (835)
.++.+++.|++|||||.++-..+-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999998755443
No 380
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=60.66 E-value=6.4 Score=38.89 Aligned_cols=76 Identities=9% Similarity=0.062 Sum_probs=49.7
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCC--CCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCc------CCcCCCCCCc
Q 003260 492 GGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI------VESGLDIQNA 563 (835)
Q Consensus 492 ggqvlVf~n~v~~~e~l~~~L~~~~p--~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~i------ie~GIDIp~v 563 (835)
+.+++|++|+++-+..+++.+....+ +..+..++|+.+..+.... +. ..+|+|+|.- ....+++.++
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 46899999999988888888887653 5788899998765443322 22 3789999962 1345677788
Q ss_pred cEEEEecCC
Q 003260 564 NTIIVQDVQ 572 (835)
Q Consensus 564 ~~VIi~d~p 572 (835)
.+||+..++
T Consensus 157 ~~iViDEah 165 (224)
T 1qde_A 157 KMFILDEAD 165 (224)
T ss_dssp CEEEEETHH
T ss_pred cEEEEcChh
Confidence 888876554
No 381
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=60.64 E-value=5 Score=39.25 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=17.1
Q ss_pred CCcEEEEccCCCcccHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a 323 (835)
++-++|+|+.|||||.++-..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L 38 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAI 38 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 457899999999999886443
No 382
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=60.54 E-value=17 Score=45.16 Aligned_cols=84 Identities=7% Similarity=0.008 Sum_probs=61.2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcC-----------------------------------CCCcEEEEecCCCCHHH
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSK-----------------------------------YPDIKVGLLSRFQSKAE 374 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~-----------------------------------~~gi~V~~l~g~~s~~e 374 (835)
...+++|.++++.-+.+.+..+.. .+- .....|..++++.+..+
T Consensus 335 ~~~~~IVF~~sr~~~e~la~~L~~-~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~ 413 (997)
T 4a4z_A 335 ELLPMVVFVFSKKRCEEYADWLEG-INFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIV 413 (997)
T ss_dssp TCCSEEEECSCHHHHHHHHHTTTT-CCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHH
Confidence 346899999999888877666543 110 00124789999999999
Q ss_pred HHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcCccc
Q 003260 375 KEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQR 416 (835)
Q Consensus 375 ~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDEaHr 416 (835)
+......+.+|.++|+|+|. .+...+++.+ ..+|+.-...
T Consensus 414 R~~v~~~F~~G~~kVLvAT~-~~a~GIDiP~-~~VVi~~~~k 453 (997)
T 4a4z_A 414 KELIEILFSKGFIKVLFATE-TFAMGLNLPT-RTVIFSSIRK 453 (997)
T ss_dssp HHHHHHHHHTTCCSEEEECT-HHHHSCCCCC-SEEEESCSEE
T ss_pred HHHHHHHHHCCCCcEEEEch-HhhCCCCCCC-ceEEEecccc
Confidence 99999999999999999996 4555677777 5556544443
No 383
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=60.40 E-value=5.9 Score=43.19 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCcccHHH
Q 003260 303 PMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~va 320 (835)
+..++|+||||||||...
T Consensus 123 ~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 347899999999999763
No 384
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=60.26 E-value=6.7 Score=41.66 Aligned_cols=36 Identities=28% Similarity=0.218 Sum_probs=22.9
Q ss_pred CCCcEEEEccCCCcccHHHH-HHHHHHHcCCCEEEEEc
Q 003260 302 TPMDRLICGDVGFGKTEVAL-RAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val-~a~l~~l~~g~qvlVLv 338 (835)
.+.-+.++||+|+|||...- ++-+.. ..++++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAA 135 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEe
Confidence 35567899999999988753 332222 3455666653
No 385
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=60.15 E-value=4.6 Score=38.73 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=17.0
Q ss_pred CcEEEEccCCCcccHHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~ 324 (835)
+.++++|+.|||||.++-..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 458999999999999874443
No 386
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=59.86 E-value=3.7 Score=39.07 Aligned_cols=19 Identities=32% Similarity=0.303 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCcccHHHH
Q 003260 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val 321 (835)
++.++++|+.|||||.++-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568899999999998763
No 387
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=59.72 E-value=3.3 Score=42.42 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=17.0
Q ss_pred CCcEEEEccCCCcccHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a 323 (835)
+..++++||+|+|||..+-..
T Consensus 44 ~~~vll~G~~GtGKT~la~~l 64 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAV 64 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHH
Confidence 456899999999999876433
No 388
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=58.86 E-value=11 Score=36.59 Aligned_cols=22 Identities=23% Similarity=-0.002 Sum_probs=17.7
Q ss_pred CCcEEEEccCCCcccHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~ 324 (835)
++-++++|+.|||||.++-..+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLK 25 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 4678999999999999874443
No 389
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=58.77 E-value=3.6 Score=40.61 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=24.5
Q ss_pred EEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHH
Q 003260 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIV 342 (835)
Q Consensus 306 ~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~ 342 (835)
++|.|++|||||.-+...+.. +..+++++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCC
Confidence 589999999999877654422 567888887543
No 390
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=58.77 E-value=6.5 Score=42.06 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCcccHHHH
Q 003260 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val 321 (835)
+..+++.||+|+|||..+-
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCCEEEESSTTSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4679999999999998753
No 391
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=58.63 E-value=4.8 Score=38.91 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=17.7
Q ss_pred CCcEEEEccCCCcccHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~ 324 (835)
++-++++|++|||||.++-..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999874443
No 392
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=58.46 E-value=4.3 Score=40.44 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=18.6
Q ss_pred CCCcEEEEccCCCcccHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
+++.++++|+.|||||.++-..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999875443
No 393
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=58.32 E-value=4.9 Score=39.60 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCcccHHH
Q 003260 303 PMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~va 320 (835)
++-+.|+||+|+|||...
T Consensus 4 g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp -CCEEEECCTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 466899999999999875
No 394
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=58.31 E-value=6.6 Score=52.03 Aligned_cols=47 Identities=19% Similarity=0.173 Sum_probs=37.4
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 348 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~ 348 (835)
+.+..++++|++|+|||..++..+......|..++++.-. ++..+++
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~e-e~~~~L~ 1125 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE-HALDPIY 1125 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT-SCCCHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcc-ccHHHHH
Confidence 4678999999999999999998888888889888887533 3334444
No 395
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=57.87 E-value=5 Score=38.83 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=16.1
Q ss_pred CcEEEEccCCCcccHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a 323 (835)
|.+++.|+.|||||.++-..
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L 20 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEI 20 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHH
Confidence 35789999999999886443
No 396
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=57.70 E-value=6.7 Score=51.23 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=33.8
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEccc
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 340 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPt 340 (835)
+.+..++|+|++|+|||..++..+...+..|..|+|+.-.
T Consensus 32 ~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te 71 (1706)
T 3cmw_A 32 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 71 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEec
Confidence 4578899999999999999988888887788888888643
No 397
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=57.47 E-value=5.1 Score=39.06 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCcccHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~ 322 (835)
++-++++|+.|||||.++-.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~ 34 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEK 34 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688999999999988633
No 398
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=57.31 E-value=8.4 Score=37.96 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=16.1
Q ss_pred CCCCcEEEEccCCCcccHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~va 320 (835)
+.+.-+.|.||+|||||..+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34566788999999999765
No 399
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=57.18 E-value=6.6 Score=39.24 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=26.4
Q ss_pred cEEEEccCCCcccHHHHHHHHHHHcCCCEEEEE
Q 003260 305 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVL 337 (835)
.+.+++.-|.|||.++...+......|++|+++
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 356688999999999887777666778888776
No 400
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=56.73 E-value=5.5 Score=37.96 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=16.5
Q ss_pred cEEEEccCCCcccHHHHHHH
Q 003260 305 DRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~a~ 324 (835)
.++|+|+.|||||.++-..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999874443
No 401
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=56.53 E-value=5.5 Score=44.32 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=15.9
Q ss_pred cEEEEccCCCcccHHHHHHH
Q 003260 305 DRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~a~ 324 (835)
-++|+||||||||..+...+
T Consensus 4 ~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHH
Confidence 46889999999998765443
No 402
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=56.51 E-value=5 Score=38.40 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=17.2
Q ss_pred CCcEEEEccCCCcccHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~ 324 (835)
++-++++|+.|||||.++-..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999864443
No 403
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=56.41 E-value=4.4 Score=40.00 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.5
Q ss_pred CcEEEEccCCCcccHHH
Q 003260 304 MDRLICGDVGFGKTEVA 320 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~va 320 (835)
+.++|+||+|+|||.+.
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34899999999999864
No 404
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=55.98 E-value=5.6 Score=38.54 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=17.6
Q ss_pred CCCcEEEEccCCCcccHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a 323 (835)
+++.+.|.|++|||||.++-..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~L 28 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALL 28 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHH
Confidence 4567889999999999986443
No 405
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=55.74 E-value=5.8 Score=40.30 Aligned_cols=18 Identities=44% Similarity=0.719 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCcccHHH
Q 003260 303 PMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~va 320 (835)
+..++++||+|+|||..+
T Consensus 49 ~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 345999999999999775
No 406
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=55.68 E-value=5.9 Score=37.35 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=16.8
Q ss_pred CcEEEEccCCCcccHHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~ 324 (835)
+.++++|+.|||||.++-..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 458999999999999874443
No 407
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=55.55 E-value=8.7 Score=41.96 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=22.8
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
.+.-+.++|++|+|||...-..+-.....++++++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 3456788999999999875332222223455666553
No 408
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=55.37 E-value=6.3 Score=39.34 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCCcccHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val 321 (835)
.+.-++|+||+|+|||...-
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHH
Confidence 45678899999999998753
No 409
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=54.80 E-value=9.3 Score=39.79 Aligned_cols=18 Identities=44% Similarity=0.665 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCcccHHH
Q 003260 303 PMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~va 320 (835)
+..+++.||.|+|||..+
T Consensus 44 ~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 345999999999999865
No 410
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=54.70 E-value=6.2 Score=37.24 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=17.4
Q ss_pred CcEEEEccCCCcccHHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~ 324 (835)
.+++|.|+.|||||.++-..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 578999999999999875443
No 411
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=54.58 E-value=21 Score=37.64 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=25.0
Q ss_pred CCcEEEEcc-CCCcccHHHHHHHHHHHcCCCEEEEE
Q 003260 303 PMDRLICGD-VGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 303 ~~d~Ll~a~-TGsGKT~val~a~l~~l~~g~qvlVL 337 (835)
++-+++.++ .|.|||.++...+......|++|+++
T Consensus 104 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 104 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp CCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 344555554 69999999876666655678888876
No 412
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=54.43 E-value=16 Score=50.02 Aligned_cols=62 Identities=11% Similarity=0.150 Sum_probs=37.3
Q ss_pred HhCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHH--HHHHHHHHcCC-CEEEEEccc
Q 003260 276 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA--LRAIFCVVSAG-KQAMVLAPT 340 (835)
Q Consensus 276 ~~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~va--l~a~l~~l~~g-~qvlVLvPt 340 (835)
....+.+++.+..=+..+.+-+.. ...++++||||||||.++ +..++..+... ..+.++-|-
T Consensus 899 ~~~~l~~~~~~~~K~~ql~e~~~~---r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk 963 (2695)
T 4akg_A 899 QRSGFSMSEEFLKKCMQFYYMQKT---QQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTK 963 (2695)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHHHH---CSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTT
T ss_pred HHcCCcccHHHHHHHHHHHHHHHh---cceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 334567777776655555554432 366999999999999985 33333333322 234455554
No 413
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=54.11 E-value=6.7 Score=37.98 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.8
Q ss_pred cEEEEccCCCcccHHH
Q 003260 305 DRLICGDVGFGKTEVA 320 (835)
Q Consensus 305 d~Ll~a~TGsGKT~va 320 (835)
-+.|+||+|+|||..+
T Consensus 3 ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 3 PIVISGPSGTGKSTLL 18 (186)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999874
No 414
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=54.08 E-value=5.1 Score=39.29 Aligned_cols=19 Identities=26% Similarity=0.153 Sum_probs=15.2
Q ss_pred cEEEEccCCCcccHHHHHH
Q 003260 305 DRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~a 323 (835)
-++++|+.|||||..+-..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L 20 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKL 20 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 3688999999999886443
No 415
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=53.95 E-value=6.2 Score=39.51 Aligned_cols=21 Identities=33% Similarity=0.306 Sum_probs=16.7
Q ss_pred CcEEEEccCCCcccHHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~ 324 (835)
|.+++.|+.|||||.++-..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999875443
No 416
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=53.91 E-value=7.3 Score=39.42 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=18.3
Q ss_pred CCCcEEEEccCCCcccHHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l 325 (835)
+++-++|.||+||||++++-..+-
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 355678899999999998755543
No 417
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=53.86 E-value=16 Score=43.19 Aligned_cols=67 Identities=12% Similarity=0.034 Sum_probs=50.5
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccCCccEE
Q 003260 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~ll 409 (835)
.+.++||.+|++.-+.++++.+.+. ++++..++|..+..+ ..++..+|+|+|. .+...+++. +++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~-----g~~v~~lHG~l~q~e-------r~~~~~~VLVATd-VaerGIDId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL-----GINAVAYYRGLDVSV-------IPTIGDVVVVATD-ALMTGYTGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECTTSCGGG-------SCSSSCEEEEECT-THHHHCCCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC-----CCcEEEecCCCCHHH-------HHhCCCcEEEECC-hHHccCCCC-CcEE
Confidence 4679999999999999998888763 688999999887654 2345569999995 444445553 7766
Q ss_pred E
Q 003260 410 V 410 (835)
Q Consensus 410 V 410 (835)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 418
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=53.65 E-value=20 Score=43.69 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=43.5
Q ss_pred cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccH
Q 003260 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 394 (835)
Q Consensus 329 ~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~ 394 (835)
..+.+|||.+.|++-+..+...+.+. |+.+.++++.....++.-.......| .|+|+|.
T Consensus 458 ~~gqpvLVft~Sie~sE~Ls~~L~~~-----Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATn 516 (922)
T 1nkt_A 458 AKGQPVLIGTTSVERSEYLSRQFTKR-----RIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATN 516 (922)
T ss_dssp HTTCCEEEEESCHHHHHHHHHHHHHT-----TCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEET
T ss_pred hcCCcEEEEECCHHHHHHHHHHHHHC-----CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecc
Confidence 45778999999999999888888764 78899999986544443333444444 6999994
No 419
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=53.46 E-value=6.6 Score=38.89 Aligned_cols=21 Identities=24% Similarity=0.142 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCcccHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a 323 (835)
++.+.|.|++|||||+++-..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 356889999999999886433
No 420
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=53.21 E-value=8.9 Score=40.91 Aligned_cols=46 Identities=13% Similarity=0.071 Sum_probs=28.4
Q ss_pred HHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcc
Q 003260 288 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 288 ~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvP 339 (835)
.++..+.- .-+.+.-+.|+||+|||||..+-+ +...+ .+.+++.+|
T Consensus 114 ~vL~~vsl---~i~~Ge~vaIvGpsGsGKSTLl~l-L~gl~--~G~I~~~v~ 159 (305)
T 2v9p_A 114 NALKLWLK---GIPKKNCLAFIGPPNTGKSMLCNS-LIHFL--GGSVLSFAN 159 (305)
T ss_dssp HHHHHHHH---TCTTCSEEEEECSSSSSHHHHHHH-HHHHH--TCEEECGGG
T ss_pred hhhccceE---EecCCCEEEEECCCCCcHHHHHHH-Hhhhc--CceEEEEec
Confidence 45555443 235567788999999999976432 22333 456655554
No 421
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=53.01 E-value=6.6 Score=42.77 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCcccHHH
Q 003260 302 TPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~va 320 (835)
.+..++|+||||||||...
T Consensus 174 ~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp TTCCEEEEESSSSCHHHHH
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 3578999999999999763
No 422
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=52.90 E-value=4.6 Score=38.71 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCcccHHHH
Q 003260 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val 321 (835)
+.-+.++||.|||||..+-
T Consensus 9 gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4567899999999998653
No 423
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=52.78 E-value=14 Score=36.81 Aligned_cols=31 Identities=29% Similarity=0.199 Sum_probs=22.3
Q ss_pred CHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHH
Q 003260 283 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 283 tp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~va 320 (835)
+..|..++..+.. +.-+.|.||.|||||..+
T Consensus 9 ~~g~~~~l~~i~~-------Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAIDT-------NTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHHHH-------CSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhccC-------CCEEEEECCCCCCHHHHH
Confidence 3446666666532 456789999999999875
No 424
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=52.30 E-value=11 Score=39.72 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=15.9
Q ss_pred CCCCcEEEEccCCCcccHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~va 320 (835)
..+.-+.|+|++|||||..+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34556778999999999886
No 425
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=52.28 E-value=11 Score=40.41 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=27.7
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEE
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVL 337 (835)
.-+++.|..|.|||.++...+......|.+|+++
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllv 53 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLI 53 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 4456789999999999877777777788888876
No 426
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=51.91 E-value=12 Score=37.44 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=25.0
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEE-ccc
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL-APT 340 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVL-vPt 340 (835)
++-+++.|+.|||||.++-...-..-..|..++++ -|.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~ 44 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCC
Confidence 56788999999999998754443333345555443 354
No 427
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=51.89 E-value=10 Score=40.36 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=27.0
Q ss_pred cEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 305 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
-++..|..|.|||.++...+......|.+|+++-
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 3456789999999998877777667788888775
No 428
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=51.84 E-value=2.7 Score=45.45 Aligned_cols=24 Identities=17% Similarity=0.014 Sum_probs=19.1
Q ss_pred CCcEEEEccCCCcccHHHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~ 326 (835)
+.-+++.||+|+|||..++..+..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 455799999999999987766554
No 429
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=51.64 E-value=7.2 Score=38.24 Aligned_cols=19 Identities=32% Similarity=0.191 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCcccHHHH
Q 003260 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val 321 (835)
+.-+.|+|++|||||.++-
T Consensus 21 ~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4567899999999998753
No 430
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=51.63 E-value=6 Score=39.12 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=52.0
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCC------CCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcC-----cCCc-CCC
Q 003260 492 GGQVFYVLPRIKGLEEPMDFLQQAFP------GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVES-GLD 559 (835)
Q Consensus 492 ggqvlVf~n~v~~~e~l~~~L~~~~p------~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~-----iie~-GID 559 (835)
+.+++|++|+++-+..+++.+++... +..+..++|+.+.... .+.+ ....+|+|+|+ .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---LEKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---TCCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---HHHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 46899999999888888887776542 5678888998754322 1112 23578999995 2222 456
Q ss_pred CCCccEEEEecCC
Q 003260 560 IQNANTIIVQDVQ 572 (835)
Q Consensus 560 Ip~v~~VIi~d~p 572 (835)
+.++++||+..++
T Consensus 148 ~~~~~~lViDEah 160 (219)
T 1q0u_A 148 VHTAHILVVDEAD 160 (219)
T ss_dssp GGGCCEEEECSHH
T ss_pred cCcceEEEEcCch
Confidence 7778888765554
No 431
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=51.58 E-value=13 Score=36.76 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=25.1
Q ss_pred EEEccCCCcccHHHHHHHHHHHcCCCEEEEEcc
Q 003260 307 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 307 Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvP 339 (835)
+....+|+|||.+++..+......|.+|+++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 334568999999987777666677889998755
No 432
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=51.33 E-value=34 Score=42.58 Aligned_cols=82 Identities=15% Similarity=0.234 Sum_probs=57.5
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhc-------CCCCcEEEEecCCC---------------------CHH---------
Q 003260 331 GKQAMVLAPTIVLAKQHFDVVSERFS-------KYPDIKVGLLSRFQ---------------------SKA--------- 373 (835)
Q Consensus 331 g~qvlVLvPtr~LA~Q~~~~~~~~f~-------~~~gi~V~~l~g~~---------------------s~~--------- 373 (835)
+.+++|+|+++.-|...++.|.+... ...+++++++.++. +..
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 56899999999999999999987541 22235664443321 111
Q ss_pred --------------------HHHHHHHhhhcCCcceeeccHHHhhcccccCCccEEEEcC
Q 003260 374 --------------------EKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDE 413 (835)
Q Consensus 374 --------------------e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~~l~llVIDE 413 (835)
.+......+++|+++|+|+|.-. ...++...+.++.+|=
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~l-ltGfDiP~l~tlylDk 675 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMF-LTGFDAPTLNTLFVDK 675 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTT-SSSCCCTTEEEEEEES
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchH-HhCcCcccccEEEEcc
Confidence 24556677888999999999544 4567778888899983
No 433
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=51.01 E-value=7.9 Score=36.43 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=13.7
Q ss_pred cEEEEccCCCcccHHH
Q 003260 305 DRLICGDVGFGKTEVA 320 (835)
Q Consensus 305 d~Ll~a~TGsGKT~va 320 (835)
-.+|+||+|+|||.+.
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4689999999999873
No 434
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=50.99 E-value=13 Score=36.16 Aligned_cols=17 Identities=24% Similarity=0.071 Sum_probs=13.9
Q ss_pred cEEEEccCCCcccHHHH
Q 003260 305 DRLICGDVGFGKTEVAL 321 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val 321 (835)
-++++|+.|||||....
T Consensus 8 ~i~i~G~sGsGKTTl~~ 24 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLK 24 (174)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 46789999999997643
No 435
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=50.75 E-value=8.9 Score=41.53 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=30.2
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHHHHHcC------CCEEEEEc
Q 003260 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA------GKQAMVLA 338 (835)
Q Consensus 289 AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l~~l~~------g~qvlVLv 338 (835)
.++.++.. .-+.+.-+.|+||.|||||..+...+...... +..|+++.
T Consensus 119 ~LD~lL~g--gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~ 172 (349)
T 1pzn_A 119 SLDKLLGG--GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 172 (349)
T ss_dssp HHHHHHTS--SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE
T ss_pred HHHHHhcC--CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe
Confidence 45556531 22456778899999999998876655443111 25666664
No 436
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=50.66 E-value=15 Score=38.40 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCcccHHHH
Q 003260 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val 321 (835)
...+++.||+|+|||..+.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3458999999999998765
No 437
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=50.59 E-value=7.7 Score=40.10 Aligned_cols=17 Identities=41% Similarity=0.612 Sum_probs=14.7
Q ss_pred CcEEEEccCCCcccHHH
Q 003260 304 MDRLICGDVGFGKTEVA 320 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~va 320 (835)
..++++||+|+|||..+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 44999999999999875
No 438
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=50.45 E-value=11 Score=39.18 Aligned_cols=52 Identities=4% Similarity=-0.000 Sum_probs=36.5
Q ss_pred CCCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEcccHHHHHHHHHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPtr~LA~Q~~~~~~~ 353 (835)
+++..+++.|++|+|||..++..+...+.+|-+++++.-.. -..++.+++..
T Consensus 19 ~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e-~~~~l~~~~~~ 70 (260)
T 3bs4_A 19 KHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISY-PLQLIIRILSR 70 (260)
T ss_dssp TTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSS-CHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeC-CHHHHHHHHHH
Confidence 45667788889999999777777777788888888876432 23455555554
No 439
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=50.44 E-value=7.8 Score=37.65 Aligned_cols=17 Identities=41% Similarity=0.726 Sum_probs=14.4
Q ss_pred CcEEEEccCCCcccHHH
Q 003260 304 MDRLICGDVGFGKTEVA 320 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~va 320 (835)
|.+.+.||.|+|||..+
T Consensus 1 ~~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLV 17 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35789999999999874
No 440
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=50.09 E-value=28 Score=42.21 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=52.3
Q ss_pred cCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhhhcCCcceeeccHHHhhcccccC----
Q 003260 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYN---- 404 (835)
Q Consensus 329 ~~g~qvlVLvPtr~LA~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~G~~dIIVgT~~~L~~~l~~~---- 404 (835)
..+..+||.+.|++-+..+...+... |+.+.++++.....++........ ...|+|+|. ...+.++..
T Consensus 430 ~~~~pvLVft~s~~~se~Ls~~L~~~-----gi~~~vLhg~~~~rEr~ii~~ag~--~g~VlIATd-mAgRG~DI~l~~~ 501 (844)
T 1tf5_A 430 MTGQPVLVGTVAVETSELISKLLKNK-----GIPHQVLNAKNHEREAQIIEEAGQ--KGAVTIATN-MAGRGTDIKLGEG 501 (844)
T ss_dssp HHTCCEEEEESCHHHHHHHHHHHHTT-----TCCCEEECSSCHHHHHHHHTTTTS--TTCEEEEET-TSSTTCCCCCCTT
T ss_pred hcCCcEEEEECCHHHHHHHHHHHHHC-----CCCEEEeeCCccHHHHHHHHHcCC--CCeEEEeCC-ccccCcCccccch
Confidence 34678999999999998888877653 788999999865555433322222 347999994 333333333
Q ss_pred ----CccEEEEcCccc
Q 003260 405 ----NLGLLVVDEEQR 416 (835)
Q Consensus 405 ----~l~llVIDEaHr 416 (835)
...+||-=|.|.
T Consensus 502 V~~~ggl~VIn~d~p~ 517 (844)
T 1tf5_A 502 VKELGGLAVVGTERHE 517 (844)
T ss_dssp SGGGTSEEEEESSCCS
T ss_pred hhhcCCcEEEEecCCC
Confidence 344666666664
No 441
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=49.99 E-value=13 Score=37.68 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=22.5
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEE
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 336 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlV 336 (835)
.++-+++.|+.|||||.++-..+-. +..+..++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~-l~~~~~~~~ 58 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR-LVKDYDVIM 58 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH-HTTTSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH-HhcCCCcee
Confidence 4677889999999999886444333 222445543
No 442
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=49.92 E-value=27 Score=36.20 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=23.5
Q ss_pred cEEEEc-cCCCcccHHHHHHHHHHHcCCCEEEEE
Q 003260 305 DRLICG-DVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 305 d~Ll~a-~TGsGKT~val~a~l~~l~~g~qvlVL 337 (835)
-+++.+ ..|.|||.++...+......|++|+++
T Consensus 84 vI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 84 SIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 344544 468999999877666666678888776
No 443
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=49.51 E-value=8.8 Score=40.89 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=24.2
Q ss_pred EEEEccCCCcccHHHHHHHHHHHcCCCEEEEEccc
Q 003260 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 340 (835)
Q Consensus 306 ~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPt 340 (835)
++|.|+.|||||... ..+.. ...+.+++|+.|.
T Consensus 7 ~~i~G~~GaGKTTll-~~l~~-~~~~~~~aVi~~d 39 (318)
T 1nij_A 7 TLLTGFLGAGKTTLL-RHILN-EQHGYKIAVIENE 39 (318)
T ss_dssp EEEEESSSSSCHHHH-HHHHH-SCCCCCEEEECSS
T ss_pred EEEEecCCCCHHHHH-HHHHh-hcCCCcEEEEEec
Confidence 578999999999764 33332 2367889999985
No 444
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=49.47 E-value=8.9 Score=38.31 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCcccHHH
Q 003260 302 TPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~va 320 (835)
.+.-+.|+||+|+|||..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567889999999999864
No 445
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=49.41 E-value=12 Score=37.77 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=25.8
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
..-+++.|..|+|||..+...+.... .|.+++++-
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 34567899999999998766655544 677777765
No 446
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=49.26 E-value=8 Score=37.21 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=14.7
Q ss_pred cEEEEccCCCcccHHHHH
Q 003260 305 DRLICGDVGFGKTEVALR 322 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val~ 322 (835)
-++++|+.|||||..+-.
T Consensus 4 ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 468899999999987533
No 447
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=49.21 E-value=6.5 Score=42.27 Aligned_cols=17 Identities=35% Similarity=0.710 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCcccHH
Q 003260 303 PMDRLICGDVGFGKTEV 319 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~v 319 (835)
+..++|+|+||||||..
T Consensus 171 g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp TCCEEEEESTTSCHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 56799999999999975
No 448
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=49.05 E-value=11 Score=43.78 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val 321 (835)
|..++..+...+.. +..+++.||+|+|||..+-
T Consensus 46 ~~~~l~~l~~~i~~---g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 46 QEHAVEVIKTAANQ---KRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp CHHHHHHHHHHHHT---TCCEEEECCTTSSHHHHHH
T ss_pred chhhHhhccccccC---CCEEEEEeCCCCCHHHHHH
Confidence 45555555544422 4689999999999998763
No 449
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=48.97 E-value=12 Score=42.78 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=27.4
Q ss_pred CCCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEccc
Q 003260 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 340 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLvPt 340 (835)
.+.-++|.|++|+|||..+...+-.....|..++++++.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 456788999999999988655544433456667776654
No 450
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=48.95 E-value=6.9 Score=38.69 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCcccHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~ 322 (835)
++-+.|.|+.|||||.++-.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~ 23 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANA 23 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 46788999999999988643
No 451
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=48.66 E-value=9.1 Score=38.73 Aligned_cols=19 Identities=32% Similarity=0.399 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCcccHHHH
Q 003260 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val 321 (835)
++-++|+|+.|||||..+-
T Consensus 27 ~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5678999999999998753
No 452
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=48.64 E-value=8.3 Score=37.54 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=14.7
Q ss_pred cEEEEccCCCcccHHHH
Q 003260 305 DRLICGDVGFGKTEVAL 321 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val 321 (835)
.+.|+|+.|||||.++-
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 57899999999998863
No 453
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=48.38 E-value=14 Score=42.78 Aligned_cols=36 Identities=22% Similarity=0.438 Sum_probs=29.1
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
.+-+++.|..|.|||.++...+......|.+|+++-
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 355778899999999998877777777888888864
No 454
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=48.26 E-value=8.3 Score=37.77 Aligned_cols=19 Identities=37% Similarity=0.438 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCcccHHH
Q 003260 302 TPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~va 320 (835)
.+.-+.|.|++|||||..+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3456788999999999875
No 455
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=48.05 E-value=23 Score=49.20 Aligned_cols=41 Identities=20% Similarity=0.168 Sum_probs=28.7
Q ss_pred hCCCCCCHhHHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHH
Q 003260 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 277 ~f~~~ptp~Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~va 320 (835)
...+.++|.|..=+-.+.+-+. ..+.++++||||||||.++
T Consensus 883 ~~~L~~~~~~v~KviQLye~~~---vRhGvmlVGp~gsGKTt~~ 923 (3245)
T 3vkg_A 883 QRHLVTKQEWVEKILQLHQILN---INHGVMMVGPSGGGKTTSW 923 (3245)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHT---TCSEEEEECSSSSSHHHHH
T ss_pred HcCCccCHHHHHHHHHHHHHHH---heeeEEEECCCCCCHHHHH
Confidence 3455667766665555555442 3466999999999999985
No 456
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=47.46 E-value=13 Score=40.05 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=26.3
Q ss_pred EEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 306 ~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
++..|..|.|||.++...+......|++|+++-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 455789999999998777776667788888775
No 457
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=47.43 E-value=17 Score=38.27 Aligned_cols=75 Identities=13% Similarity=0.082 Sum_probs=53.7
Q ss_pred CCeEEEEecCccChHHHHHHHHhhC---CCCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCc-----C-C-cCCCCC
Q 003260 492 GGQVFYVLPRIKGLEEPMDFLQQAF---PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-----V-E-SGLDIQ 561 (835)
Q Consensus 492 ggqvlVf~n~v~~~e~l~~~L~~~~---p~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~i-----i-e-~GIDIp 561 (835)
+.+++|++|+++-+..+++.+.... ++..+..++|+...... .....+|||||+- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 3479999999998888877776653 57788888887653221 1345789999972 2 2 357888
Q ss_pred CccEEEEecCCC
Q 003260 562 NANTIIVQDVQQ 573 (835)
Q Consensus 562 ~v~~VIi~d~p~ 573 (835)
++.++|+..++.
T Consensus 235 ~l~~lVlDEad~ 246 (300)
T 3fmo_B 235 KIKVFVLDEADV 246 (300)
T ss_dssp GCSEEEETTHHH
T ss_pred hceEEEEeCHHH
Confidence 999998766553
No 458
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=47.23 E-value=7.1 Score=39.12 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=11.7
Q ss_pred CCCcEEEEccCCCcccHHH
Q 003260 302 TPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~va 320 (835)
.+.-+.|.||+|||||.++
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3556789999999999875
No 459
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=45.73 E-value=16 Score=36.98 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=23.8
Q ss_pred EEEccCCCcccHHHHHHHHHHHcCCCEEEEE
Q 003260 307 LICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 307 Ll~a~TGsGKT~val~a~l~~l~~g~qvlVL 337 (835)
+..+..|.|||.+++..+......|.+|+++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLGHDVTIV 37 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 4467889999999877666655668888876
No 460
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=45.00 E-value=8.1 Score=40.37 Aligned_cols=22 Identities=32% Similarity=0.199 Sum_probs=17.5
Q ss_pred CCcEEEEccCCCcccHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~ 324 (835)
++-+.|+|+.|||||.++-..+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999999874443
No 461
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=44.93 E-value=8.2 Score=39.59 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=16.5
Q ss_pred CCCCcEEEEccCCCcccHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~va 320 (835)
.+++-+++.|..|||||.++
T Consensus 22 ~~~~~I~ieG~~GsGKST~~ 41 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFV 41 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred cCceEEEEECCCCCCHHHHH
Confidence 34677899999999999885
No 462
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=44.89 E-value=15 Score=36.47 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=23.8
Q ss_pred EEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 307 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 307 Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
+..+..|.|||.++...+......|.+|+++=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRGRKVLAVD 38 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 33567899999998776666656788888763
No 463
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=44.71 E-value=38 Score=35.39 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=24.6
Q ss_pred CcEEEE-ccCCCcccHHHHHHHHHHHcCCCEEEEE
Q 003260 304 MDRLIC-GDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 304 ~d~Ll~-a~TGsGKT~val~a~l~~l~~g~qvlVL 337 (835)
+-+++. +-.|.|||.++...+......|++|+++
T Consensus 93 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 127 (286)
T 3la6_A 93 NVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI 127 (286)
T ss_dssp CEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 344444 4569999999877776666778888877
No 464
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=44.30 E-value=12 Score=37.69 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=16.0
Q ss_pred CCCCcEEEEccCCCcccHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~va 320 (835)
+.+.-++|+||.|+|||...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 34667889999999999864
No 465
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=44.09 E-value=15 Score=37.43 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=23.2
Q ss_pred EEccCCCcccHHHHHHHHHHHcCCCEEEEE
Q 003260 308 ICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 308 l~a~TGsGKT~val~a~l~~l~~g~qvlVL 337 (835)
..+..|.|||.++...+......|.+|+++
T Consensus 24 ~s~kGGvGKTT~a~nLA~~la~~G~~Vlli 53 (262)
T 2ph1_A 24 MSGKGGVGKSTVTALLAVHYARQGKKVGIL 53 (262)
T ss_dssp ECSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EcCCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 356789999999877666666678888875
No 466
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=44.00 E-value=20 Score=36.21 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=23.7
Q ss_pred EEEEc-cCCCcccHHHHHHHHHHHcCCCEEEEEcc
Q 003260 306 RLICG-DVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 306 ~Ll~a-~TGsGKT~val~a~l~~l~~g~qvlVLvP 339 (835)
++|.| .||+|||.+.+..+......|.+|.+.=|
T Consensus 7 i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 7 FFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecc
Confidence 44444 58999999976665555567888877544
No 467
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=43.97 E-value=12 Score=38.24 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=17.3
Q ss_pred CCCcEEEEccCCCcccHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a 323 (835)
.++-+.|.|+.|||||.++-..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~L 47 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKAL 47 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3567889999999999886433
No 468
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=43.87 E-value=18 Score=39.00 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=27.9
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
.-+++.|.-|.|||.++...+......|++|+++-
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45667889999999998877777767788888765
No 469
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=43.84 E-value=12 Score=36.70 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCcccHHH
Q 003260 302 TPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~va 320 (835)
.+.-+.|.||.|||||..+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3566889999999999864
No 470
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=43.43 E-value=18 Score=37.79 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=26.8
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCEEEEE
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVL 337 (835)
.+-+.+.+--|.|||.++...+......|++|+++
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 34566678999999999877766666678888776
No 471
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=43.38 E-value=2.6e+02 Score=27.83 Aligned_cols=42 Identities=12% Similarity=-0.077 Sum_probs=26.1
Q ss_pred cccCHHHHHHHHHHHHhcC-CeEEEEecCccChHHHHHHHHhh
Q 003260 474 SAFSKEKVISAIKYELDRG-GQVFYVLPRIKGLEEPMDFLQQA 515 (835)
Q Consensus 474 ~~~~~~~l~~~i~~~l~~g-gqvlVf~n~v~~~e~l~~~L~~~ 515 (835)
..++.+...+.+.+.+..+ ....|||.+...+..+.+.|++.
T Consensus 172 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~ 214 (292)
T 3k4h_A 172 FDFSRESGQQAVEELMGLQQPPTAIMATDDLIGLGVLSALSKK 214 (292)
T ss_dssp CCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHcCCCCCcEEEEcChHHHHHHHHHHHHh
Confidence 3455566677777777654 33456666655566666777665
No 472
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=43.28 E-value=11 Score=41.29 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=13.4
Q ss_pred cEEEEccCCCcccHHH
Q 003260 305 DRLICGDVGFGKTEVA 320 (835)
Q Consensus 305 d~Ll~a~TGsGKT~va 320 (835)
-++..|.||||||...
T Consensus 87 tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 87 SCFAYGQTGSGKTYTM 102 (360)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEeeCCCCCCCCEEE
Confidence 3678999999999764
No 473
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=43.23 E-value=11 Score=41.07 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=14.4
Q ss_pred CcEEEEccCCCcccHHH
Q 003260 304 MDRLICGDVGFGKTEVA 320 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~va 320 (835)
.-.+|+|+||+|||.+.
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34689999999999873
No 474
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=43.23 E-value=1e+02 Score=34.76 Aligned_cols=34 Identities=21% Similarity=0.089 Sum_probs=24.1
Q ss_pred HHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHHHHH
Q 003260 288 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 288 ~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~a~l 325 (835)
++|+.+.. -.++...++.|+.|+|||..+...+.
T Consensus 140 r~ID~L~p----i~kGq~~~i~G~sGvGKTtL~~~l~~ 173 (473)
T 1sky_E 140 KVVDLLAP----YIKGGKIGLFGGAGVGKTVLIQELIH 173 (473)
T ss_dssp HHHHHHSC----EETTCEEEEECCSSSCHHHHHHHHHH
T ss_pred hHHHHHhh----hccCCEEEEECCCCCCccHHHHHHHh
Confidence 56766542 23467799999999999988654443
No 475
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=43.18 E-value=12 Score=38.25 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=17.9
Q ss_pred CCcEEEEccCCCcccHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~ 324 (835)
++.+.|.||+|||||.++-..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999998875443
No 476
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=43.17 E-value=14 Score=40.18 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=14.1
Q ss_pred cEEEEccCCCcccHHH
Q 003260 305 DRLICGDVGFGKTEVA 320 (835)
Q Consensus 305 d~Ll~a~TGsGKT~va 320 (835)
-.+|+||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5789999999999875
No 477
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=43.11 E-value=11 Score=36.68 Aligned_cols=17 Identities=35% Similarity=0.401 Sum_probs=14.4
Q ss_pred cEEEEccCCCcccHHHH
Q 003260 305 DRLICGDVGFGKTEVAL 321 (835)
Q Consensus 305 d~Ll~a~TGsGKT~val 321 (835)
.+.|.|+.|||||+++-
T Consensus 4 ~i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999998863
No 478
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=42.97 E-value=2.5e+02 Score=28.01 Aligned_cols=43 Identities=9% Similarity=-0.013 Sum_probs=27.3
Q ss_pred ecccCHHHHHHHHHHHHhcC-CeEEEEecCccChHHHHHHHHhh
Q 003260 473 LSAFSKEKVISAIKYELDRG-GQVFYVLPRIKGLEEPMDFLQQA 515 (835)
Q Consensus 473 ~~~~~~~~l~~~i~~~l~~g-gqvlVf~n~v~~~e~l~~~L~~~ 515 (835)
...++.+...+.+.+.+... ....|||.+...+..+.+.|++.
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~ 217 (293)
T 3l6u_A 174 SGNYDPVTSERVMRQVIDSGIPFDAVYCHNDDIAMGVLEALKKA 217 (293)
T ss_dssp ECTTCHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCCEEEECCchHHHHHHHHHHhC
Confidence 34456666677777777654 33466777666666677777766
No 479
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=42.88 E-value=12 Score=35.66 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=13.8
Q ss_pred cEEEEccCCCcccHHH
Q 003260 305 DRLICGDVGFGKTEVA 320 (835)
Q Consensus 305 d~Ll~a~TGsGKT~va 320 (835)
-.+|+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5689999999999774
No 480
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=42.79 E-value=15 Score=35.57 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=23.0
Q ss_pred EccCCCcccHHHHHHHHHHHcCCCEEEEEc
Q 003260 309 CGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 309 ~a~TGsGKT~val~a~l~~l~~g~qvlVLv 338 (835)
.+.-|+|||.++...+......|.+|+++=
T Consensus 8 s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 356789999998777666666788888764
No 481
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=42.65 E-value=17 Score=36.95 Aligned_cols=23 Identities=22% Similarity=-0.096 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCcccHHHHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val~a~ 324 (835)
+++-+++.|+.|||||.++-..+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46778999999999999864433
No 482
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=42.58 E-value=17 Score=36.60 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=23.3
Q ss_pred EEEccCCCcccHHHHHHHHHHHcCCCEEEEE
Q 003260 307 LICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 307 Ll~a~TGsGKT~val~a~l~~l~~g~qvlVL 337 (835)
+..+..|+|||.++...+......|.+|+++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 3456789999999877666666678888775
No 483
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=42.51 E-value=21 Score=38.66 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=27.6
Q ss_pred CcEEEEccCCCcccHHHHHHHHHHH--cCCCEEEEEc
Q 003260 304 MDRLICGDVGFGKTEVALRAIFCVV--SAGKQAMVLA 338 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a~l~~l--~~g~qvlVLv 338 (835)
.-++..|-.|.|||.++...+.... ..|++|+++-
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3456678999999999887777766 7788888864
No 484
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=42.47 E-value=12 Score=36.94 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=14.1
Q ss_pred CcEEEEccCCCcccHHH
Q 003260 304 MDRLICGDVGFGKTEVA 320 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~va 320 (835)
.-.+|+||+|+|||.+.
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 34689999999999874
No 485
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=41.82 E-value=43 Score=36.96 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=17.4
Q ss_pred CCCCcEEEEccCCCcccHHHHH
Q 003260 301 ETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 301 ~~~~d~Ll~a~TGsGKT~val~ 322 (835)
..+.-++++|+.|||||.++-.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~ 277 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQE 277 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3456788999999999988643
No 486
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=41.65 E-value=14 Score=38.18 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=17.8
Q ss_pred CCcEEEEccCCCcccHHHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~ 324 (835)
+..++|+|++|||||.++-..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5679999999999999864433
No 487
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=41.46 E-value=12 Score=39.02 Aligned_cols=20 Identities=30% Similarity=0.119 Sum_probs=16.2
Q ss_pred CcEEEEccCCCcccHHHHHH
Q 003260 304 MDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 304 ~d~Ll~a~TGsGKT~val~a 323 (835)
+-++++|++|||||.++-..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L 22 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREF 22 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45789999999999986433
No 488
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=41.39 E-value=24 Score=38.18 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=28.1
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHH--cCCCEEEEEc
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVV--SAGKQAMVLA 338 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l--~~g~qvlVLv 338 (835)
.+-+++.|.-|.|||.++...+.... ..|++|+++-
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 35566778999999999877776666 7788888775
No 489
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=41.27 E-value=23 Score=36.10 Aligned_cols=31 Identities=19% Similarity=0.121 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCcccHHHHHHHHHHHcCCCE
Q 003260 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 333 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~a~l~~l~~g~q 333 (835)
++-+++.|+.|||||.++-..+-..-..+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 5678899999999999865444333334555
No 490
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=41.26 E-value=12 Score=37.96 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCcccHHHH
Q 003260 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~Ll~a~TGsGKT~val 321 (835)
+++-+.|.|+.|||||.++-
T Consensus 21 ~~~iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCA 40 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHH
Confidence 34568899999999998864
No 491
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=40.95 E-value=14 Score=35.87 Aligned_cols=78 Identities=14% Similarity=0.180 Sum_probs=46.3
Q ss_pred CCeEEEEecCccChHH-HHHHHHhhCC-CCeEEEEeCCCCHHHHHHHHHHhhcCCeeEEEEcCc-----CCc-------C
Q 003260 492 GGQVFYVLPRIKGLEE-PMDFLQQAFP-GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-----VES-------G 557 (835)
Q Consensus 492 ggqvlVf~n~v~~~e~-l~~~L~~~~p-~~~v~~lhg~m~~~ere~vl~~F~~g~~~ILVaT~i-----ie~-------G 557 (835)
+++++|++|+..-++. +.+.+....+ ++.+..++|+.....+...+. ...+|+|+|.- +.. +
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 157 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 157 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------C
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCcccccc
Confidence 6789999999877666 5555555432 578888888764322211111 14679999962 122 2
Q ss_pred CCCCCccEEEEecCCC
Q 003260 558 LDIQNANTIIVQDVQQ 573 (835)
Q Consensus 558 IDIp~v~~VIi~d~p~ 573 (835)
+.+.++++||+..++.
T Consensus 158 ~~~~~~~~iIiDEah~ 173 (216)
T 3b6e_A 158 VQLSDFSLIIIDECHH 173 (216)
T ss_dssp CCGGGCSEEEETTC--
T ss_pred cchhcccEEEEECchh
Confidence 5677788888766654
No 492
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=40.92 E-value=13 Score=39.93 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=23.3
Q ss_pred CCCHhHHHHHHHH----HHhhhcCCCCCcEEEEccCCCcccHHH
Q 003260 281 EPTPDQKKAFLDV----ERDLTERETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 281 ~ptp~Q~~AI~~i----l~dl~~~~~~~d~Ll~a~TGsGKT~va 320 (835)
.+..-|.+.++.+ .++..+ +...-++..|.||||||...
T Consensus 53 ~~~~sQ~~Vy~~~~~plv~~~l~-G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 53 QSSTSQEQVYNDCAKKIVKDVLE-GYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHT-TCCEEEEEECSTTSSHHHHH
T ss_pred CCCCCHHHHHHHHhhhhHHHHhC-CCeEEEEEECCCCCCCceEe
Confidence 3444565555443 222222 23455777899999999774
No 493
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=40.89 E-value=78 Score=35.08 Aligned_cols=33 Identities=15% Similarity=0.014 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCcccHHHHH
Q 003260 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 286 Q~~AI~~il~dl~~~~~~~d~Ll~a~TGsGKT~val~ 322 (835)
=.++|+... .-.++..+.|.||+|+|||..+..
T Consensus 161 GiraID~~~----pi~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 161 TARVLDLAS----PIGRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp HHHHHHHHS----CCBTTCEEEEECCSSSSHHHHHHH
T ss_pred cceeeeeee----eecCCcEEEEecCCCCChhHHHHH
Confidence 345555443 345678999999999999988643
No 494
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=40.75 E-value=14 Score=36.30 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=16.8
Q ss_pred CCcEEEEccCCCcccHHHHH
Q 003260 303 PMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 303 ~~d~Ll~a~TGsGKT~val~ 322 (835)
++.+.++|++|||||.++-.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~ 22 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKR 22 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 46789999999999998643
No 495
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=40.45 E-value=1.7e+02 Score=29.74 Aligned_cols=41 Identities=10% Similarity=0.041 Sum_probs=23.4
Q ss_pred ccCHHHHHHHHHHHHhcC--CeEEEEecCccChHHHHHHHHhh
Q 003260 475 AFSKEKVISAIKYELDRG--GQVFYVLPRIKGLEEPMDFLQQA 515 (835)
Q Consensus 475 ~~~~~~l~~~i~~~l~~g--gqvlVf~n~v~~~e~l~~~L~~~ 515 (835)
.++.+...+.+.+.+... ....|||.+...+..+.+.|++.
T Consensus 168 ~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~ 210 (313)
T 3m9w_A 168 GWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQ 210 (313)
T ss_dssp GGCHHHHHHHHHHHHHHTTTCCCEEEESSHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHHHc
Confidence 345555566666666543 34456666655555666666655
No 496
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=40.42 E-value=17 Score=43.18 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=18.6
Q ss_pred cCCCCCcEEEEccCCCcccHHH
Q 003260 299 ERETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 299 ~~~~~~d~Ll~a~TGsGKT~va 320 (835)
....++.+||.|..|+|||+..
T Consensus 90 ~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 90 QSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HHCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCCcEEEecCCCCCCchhhH
Confidence 3455788999999999999995
No 497
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=40.00 E-value=14 Score=40.46 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=23.5
Q ss_pred CCCHhHHHHHHHHH----HhhhcCCCCCcEEEEccCCCcccHHH
Q 003260 281 EPTPDQKKAFLDVE----RDLTERETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 281 ~ptp~Q~~AI~~il----~dl~~~~~~~d~Ll~a~TGsGKT~va 320 (835)
.+..-|.+.+..+. ++..+ +...-++..|.||||||...
T Consensus 60 ~~~~~Q~~Vy~~~~~plv~~~l~-G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 60 KPNASQEKVYNEAAKSIVTDVLA-GYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHT-TCCEEEEEECSTTSSHHHHH
T ss_pred cCCCCHHHHHHHhhhhHHHHHhC-CCceEEEeecCCCCCCceEE
Confidence 44555665554432 22222 23455677899999999874
No 498
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=39.99 E-value=23 Score=42.77 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=21.9
Q ss_pred HHHHhhhcCCCCCcEEEEccCCCcccHHH
Q 003260 292 DVERDLTERETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 292 ~il~dl~~~~~~~d~Ll~a~TGsGKT~va 320 (835)
...+.|.....++.+||.|..|+|||+..
T Consensus 129 ~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 129 KAFRDMKVLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhcCCCcEEEEcCCCCCCceehH
Confidence 34444444456788999999999999995
No 499
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=39.93 E-value=12 Score=40.78 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=23.0
Q ss_pred CCCHhHHHHHHHHHH----hhhcCCCCCcEEEEccCCCcccHHH
Q 003260 281 EPTPDQKKAFLDVER----DLTERETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 281 ~ptp~Q~~AI~~il~----dl~~~~~~~d~Ll~a~TGsGKT~va 320 (835)
.+..-|.+.+..+.. +..+ ....-++..|.||||||...
T Consensus 64 ~~~~~Q~~Vy~~~~~plv~~~l~-G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 64 GASTKQIDVYRSVVCPILDEVIM-GYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHT-TCEEEEEEEECTTSSHHHHH
T ss_pred eccCchhHHHHHHHHHhHHHHhC-CCceEEEEeCCCCCCCceEE
Confidence 344556655554332 2222 23345677899999999764
No 500
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=39.80 E-value=23 Score=36.00 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=24.3
Q ss_pred EEEEccCCCcccHHHHHHHHHHHcCCCEEEEE
Q 003260 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 306 ~Ll~a~TGsGKT~val~a~l~~l~~g~qvlVL 337 (835)
+.+++.-|.|||.++...+......|.+|+++
T Consensus 4 I~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 34467889999999877766666678888775
Done!