Query 003261
Match_columns 835
No_of_seqs 422 out of 1733
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 20:07:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003261.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003261hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 9.3E-90 2E-94 710.2 22.1 229 336-565 1-229 (229)
2 PF01852 START: START domain; 99.7 1.4E-17 3E-22 168.9 14.2 202 341-565 1-205 (206)
3 smart00234 START in StAR and p 99.7 4E-16 8.6E-21 158.7 19.1 202 342-566 2-206 (206)
4 KOG0842 Transcription factor t 99.7 8.5E-17 1.9E-21 173.0 7.5 68 129-196 149-216 (307)
5 KOG0485 Transcription factor N 99.6 1.1E-15 2.5E-20 154.8 6.7 65 130-194 101-165 (268)
6 KOG0483 Transcription factor H 99.6 6.4E-16 1.4E-20 158.0 4.9 78 138-215 55-132 (198)
7 KOG0488 Transcription factor B 99.6 8.2E-16 1.8E-20 167.4 4.9 66 129-194 168-233 (309)
8 KOG0494 Transcription factor C 99.6 2.2E-15 4.7E-20 156.0 7.3 70 136-205 144-213 (332)
9 KOG0850 Transcription factor D 99.6 1.2E-15 2.7E-20 156.3 4.4 76 124-199 113-188 (245)
10 KOG0489 Transcription factor z 99.5 1.4E-15 3E-20 162.4 1.9 65 131-195 157-221 (261)
11 KOG0487 Transcription factor A 99.5 7.3E-15 1.6E-19 158.3 7.3 64 131-194 233-296 (308)
12 KOG0843 Transcription factor E 99.5 3.1E-15 6.8E-20 148.3 3.9 64 132-195 101-164 (197)
13 KOG0484 Transcription factor P 99.5 1.5E-15 3.4E-20 138.2 1.0 65 129-193 13-77 (125)
14 KOG0492 Transcription factor M 99.5 4.2E-14 9.2E-19 142.8 5.9 65 129-193 140-204 (246)
15 KOG0848 Transcription factor C 99.4 2.5E-14 5.3E-19 149.1 2.2 66 131-196 197-262 (317)
16 KOG2251 Homeobox transcription 99.4 6E-14 1.3E-18 143.5 4.5 67 129-195 33-99 (228)
17 PF00046 Homeobox: Homeobox do 99.4 8.8E-14 1.9E-18 114.6 2.4 57 134-190 1-57 (57)
18 KOG0493 Transcription factor E 99.4 1.6E-12 3.5E-17 135.0 9.1 60 134-193 247-306 (342)
19 KOG0486 Transcription factor P 99.3 2.9E-12 6.3E-17 136.5 5.3 62 131-192 110-171 (351)
20 cd00177 START Lipid-binding ST 99.3 1.4E-10 3.1E-15 115.0 15.8 189 345-562 2-190 (193)
21 TIGR01565 homeo_ZF_HD homeobox 99.2 9.8E-12 2.1E-16 104.0 5.2 53 133-185 1-57 (58)
22 KOG0844 Transcription factor E 99.2 4.2E-12 9.1E-17 134.3 3.7 64 130-193 178-241 (408)
23 COG5576 Homeodomain-containing 99.2 5.1E-12 1.1E-16 125.4 4.0 65 132-196 50-114 (156)
24 smart00389 HOX Homeodomain. DN 99.2 3.9E-12 8.6E-17 104.0 2.5 55 135-189 2-56 (56)
25 KOG0491 Transcription factor B 99.2 1.2E-12 2.6E-17 128.3 -1.3 65 132-196 99-163 (194)
26 cd00086 homeodomain Homeodomai 99.2 5.7E-12 1.2E-16 103.6 2.8 56 135-190 2-57 (59)
27 KOG4577 Transcription factor L 99.2 2.3E-11 5.1E-16 127.9 5.7 77 132-208 166-242 (383)
28 KOG3802 Transcription factor O 99.1 3.3E-11 7.2E-16 132.7 4.8 62 131-192 292-353 (398)
29 KOG0847 Transcription factor, 99.1 2.6E-11 5.7E-16 123.5 1.6 64 130-193 164-227 (288)
30 cd08871 START_STARD10-like Lip 99.0 1.3E-08 2.9E-13 106.0 19.9 201 344-577 9-213 (222)
31 cd08868 START_STARD1_3_like Ch 99.0 1.8E-08 4E-13 103.9 16.9 196 339-567 6-208 (208)
32 cd08867 START_STARD4_5_6-like 98.9 3.6E-08 7.8E-13 101.6 17.8 195 339-564 3-205 (206)
33 KOG0490 Transcription factor, 98.9 7.2E-10 1.6E-14 114.8 4.1 64 130-193 57-120 (235)
34 cd08904 START_STARD6-like Lipi 98.8 1.4E-07 3E-12 98.0 15.1 172 339-535 3-178 (204)
35 cd08903 START_STARD5-like Lipi 98.7 8.7E-07 1.9E-11 92.0 17.1 193 339-564 3-205 (208)
36 KOG0849 Transcription factor P 98.6 1.6E-08 3.4E-13 112.9 3.4 63 130-192 173-235 (354)
37 cd08909 START_STARD13-like C-t 98.5 2.6E-06 5.7E-11 88.6 16.9 129 392-535 48-178 (205)
38 KOG1168 Transcription factor A 98.5 7.9E-08 1.7E-12 101.8 4.2 62 131-192 307-368 (385)
39 cd08869 START_RhoGAP C-termina 98.5 3.1E-06 6.6E-11 87.2 15.5 167 344-539 4-173 (197)
40 PLN00188 enhanced disease resi 98.5 1.7E-06 3.8E-11 102.4 14.6 129 396-537 227-365 (719)
41 cd08905 START_STARD1-like Chol 98.5 2.6E-06 5.5E-11 88.6 14.1 192 339-565 6-207 (209)
42 cd08906 START_STARD3-like Chol 98.4 1.1E-05 2.3E-10 84.2 16.3 196 338-565 5-207 (209)
43 cd08902 START_STARD4-like Lipi 98.3 1E-05 2.2E-10 83.6 14.9 192 339-563 3-200 (202)
44 cd08910 START_STARD2-like Lipi 98.1 4E-05 8.6E-10 79.7 14.2 183 351-566 17-206 (207)
45 KOG0775 Transcription factor S 98.1 1.4E-06 3E-11 92.4 3.3 50 140-189 183-232 (304)
46 cd08877 START_2 Uncharacterize 98.0 0.00013 2.8E-09 75.9 15.4 200 339-565 3-213 (215)
47 cd08876 START_1 Uncharacterize 98.0 0.00017 3.7E-09 73.2 14.4 152 397-564 42-194 (195)
48 cd08874 START_STARD9-like C-te 97.9 0.00014 3.1E-09 75.8 12.5 130 390-538 44-181 (205)
49 cd08908 START_STARD12-like C-t 97.8 0.00027 5.8E-09 73.7 13.6 162 343-533 11-175 (204)
50 KOG0774 Transcription factor P 97.8 9.6E-06 2.1E-10 85.4 2.6 59 134-192 189-250 (334)
51 cd08907 START_STARD8-like C-te 97.7 0.0003 6.4E-09 73.2 10.7 166 343-535 11-178 (205)
52 cd08870 START_STARD2_7-like Li 97.6 0.0024 5.3E-08 66.3 16.1 154 395-566 49-208 (209)
53 cd08872 START_STARD11-like Cer 97.5 0.0029 6.4E-08 67.3 16.6 195 344-564 9-224 (235)
54 PF05920 Homeobox_KN: Homeobox 97.5 1.6E-05 3.4E-10 62.2 -0.6 34 154-187 7-40 (40)
55 cd08911 START_STARD7-like Lipi 97.4 0.003 6.4E-08 65.8 14.4 152 397-566 46-206 (207)
56 KOG0490 Transcription factor, 97.4 0.00011 2.4E-09 76.2 3.7 64 130-193 150-213 (235)
57 KOG2252 CCAAT displacement pro 97.3 0.0001 2.2E-09 85.0 2.8 60 130-189 417-476 (558)
58 cd08873 START_STARD14_15-like 97.1 0.0048 1E-07 65.8 12.3 119 401-531 82-203 (235)
59 cd08871 START_STARD10-like Lip 97.1 0.026 5.7E-07 59.0 17.6 175 610-832 21-201 (222)
60 cd08869 START_RhoGAP C-termina 96.6 0.088 1.9E-06 54.4 16.1 174 610-833 17-196 (197)
61 cd08907 START_STARD8-like C-te 96.5 0.17 3.7E-06 53.0 17.8 174 609-832 24-203 (205)
62 cd08913 START_STARD14-like Lip 96.5 0.034 7.3E-07 59.6 12.8 129 399-540 84-215 (240)
63 cd08914 START_STARD15-like Lip 96.4 0.027 5.8E-07 60.2 11.6 129 397-540 79-211 (236)
64 KOG1146 Homeobox protein [Gene 96.4 0.0035 7.5E-08 78.6 5.0 61 133-193 903-963 (1406)
65 cd08904 START_STARD6-like Lipi 96.1 0.27 5.8E-06 51.6 16.8 174 611-831 21-203 (204)
66 cd08874 START_STARD9-like C-te 95.4 0.19 4.1E-06 52.7 12.4 133 609-762 19-157 (205)
67 KOG0773 Transcription factor M 95.1 0.015 3.2E-07 64.9 3.1 62 133-194 239-303 (342)
68 cd08876 START_1 Uncharacterize 94.9 1.8 3.9E-05 43.9 17.5 59 609-676 14-72 (195)
69 cd08877 START_2 Uncharacterize 94.7 1.6 3.4E-05 45.6 16.8 117 598-731 10-129 (215)
70 cd00177 START Lipid-binding ST 94.5 1.9 4.1E-05 42.7 16.2 147 612-801 15-165 (193)
71 cd08868 START_STARD1_3_like Ch 94.3 2.3 4.9E-05 44.2 16.8 132 611-763 23-161 (208)
72 cd08870 START_STARD2_7-like Li 94.3 1.7 3.6E-05 45.4 15.7 107 611-731 21-133 (209)
73 cd08867 START_STARD4_5_6-like 94.2 4.9 0.00011 41.6 19.1 145 592-762 8-160 (206)
74 cd08906 START_STARD3-like Chol 94.1 3.7 8E-05 43.1 17.9 130 611-761 24-160 (209)
75 smart00234 START in StAR and p 94.0 2.9 6.3E-05 42.6 16.7 135 611-763 18-158 (206)
76 cd08908 START_STARD12-like C-t 93.8 2.3 4.9E-05 44.8 15.6 172 613-832 28-202 (204)
77 cd08903 START_STARD5-like Lipi 93.7 2.3 4.9E-05 44.5 15.4 178 610-832 20-206 (208)
78 cd08911 START_STARD7-like Lipi 93.4 2.2 4.7E-05 44.5 14.8 180 610-832 19-205 (207)
79 PF11569 Homez: Homeodomain le 93.2 0.019 4.2E-07 48.2 -0.7 42 144-185 9-50 (56)
80 cd08909 START_STARD13-like C-t 93.0 4.5 9.8E-05 42.6 16.3 173 612-832 27-203 (205)
81 cd08914 START_STARD15-like Lip 92.6 1.3 2.9E-05 47.5 11.9 57 609-676 53-109 (236)
82 cd08873 START_STARD14_15-like 92.2 1.4 3E-05 47.4 11.4 66 610-688 53-118 (235)
83 PF01852 START: START domain; 91.3 5.7 0.00012 40.3 14.5 150 594-762 2-157 (206)
84 cd08860 TcmN_ARO-CYC_like N-te 90.2 5.2 0.00011 39.5 12.5 140 400-566 5-144 (146)
85 PRK09413 IS2 repressor TnpA; R 90.2 0.84 1.8E-05 43.7 6.7 40 138-182 11-51 (121)
86 cd05018 CoxG Carbon monoxide d 89.5 4.7 0.0001 37.9 11.3 119 401-545 6-124 (144)
87 cd08866 SRPBCC_11 Ligand-bindi 89.1 6.8 0.00015 37.2 12.1 133 399-565 2-143 (144)
88 cd08875 START_ArGLABRA2_like C 88.4 15 0.00032 39.5 15.1 187 590-808 3-204 (229)
89 cd08864 SRPBCC_DUF3074 DUF3074 88.3 3.4 7.4E-05 43.5 10.2 99 431-535 76-179 (208)
90 KOG4005 Transcription factor X 87.4 2.8 6E-05 44.8 8.7 39 182-220 82-122 (292)
91 cd07819 SRPBCC_2 Ligand-bindin 87.3 14 0.0003 34.4 12.9 132 400-563 6-139 (140)
92 KOG2761 START domain-containin 86.6 5.5 0.00012 42.3 10.4 112 405-529 63-183 (219)
93 KOG4196 bZIP transcription fac 86.4 1.8 3.9E-05 42.3 6.2 86 138-257 22-108 (135)
94 cd07813 COQ10p_like Coenzyme Q 85.9 8.5 0.00018 36.5 10.7 135 400-566 3-137 (138)
95 cd08910 START_STARD2-like Lipi 85.0 1.6 3.4E-05 45.7 5.5 93 609-718 22-116 (207)
96 cd08905 START_STARD1-like Chol 83.7 61 0.0013 33.9 16.7 195 590-832 5-207 (209)
97 PRK10724 hypothetical protein; 83.6 22 0.00048 35.8 12.9 137 399-567 18-154 (158)
98 KOG3623 Homeobox transcription 82.3 0.6 1.3E-05 56.3 1.3 46 145-190 568-613 (1007)
99 cd08861 OtcD1_ARO-CYC_like N-t 82.3 8.8 0.00019 36.3 9.1 27 401-427 4-30 (142)
100 cd08913 START_STARD14-like Lip 82.1 2.1 4.7E-05 46.0 5.3 57 609-676 56-112 (240)
101 cd07821 PYR_PYL_RCAR_like Pyra 82.0 20 0.00044 33.1 11.4 135 401-565 6-140 (140)
102 cd07817 SRPBCC_8 Ligand-bindin 81.5 34 0.00074 31.9 12.7 134 401-565 5-138 (139)
103 PF02183 HALZ: Homeobox associ 80.0 3.5 7.6E-05 33.4 4.5 40 192-259 2-41 (45)
104 PRK15422 septal ring assembly 79.8 6.1 0.00013 35.7 6.4 61 189-263 12-76 (79)
105 PF10604 Polyketide_cyc2: Poly 79.7 51 0.0011 30.4 14.3 35 401-439 7-41 (139)
106 cd08902 START_STARD4-like Lipi 77.5 4.8 0.0001 42.4 5.9 59 610-677 21-79 (202)
107 PF06005 DUF904: Protein of un 75.0 8.1 0.00017 34.3 5.8 50 192-262 15-68 (72)
108 PF04218 CENP-B_N: CENP-B N-te 73.5 2 4.3E-05 35.6 1.5 46 134-184 1-46 (53)
109 cd07822 SRPBCC_4 Ligand-bindin 72.2 39 0.00085 31.2 10.2 51 512-565 91-141 (141)
110 cd08872 START_STARD11-like Cer 71.7 12 0.00025 40.2 7.3 97 608-718 22-121 (235)
111 cd08865 SRPBCC_10 Ligand-bindi 71.6 70 0.0015 29.4 11.8 136 401-565 4-139 (140)
112 TIGR00219 mreC rod shape-deter 71.3 5.3 0.00011 44.0 4.7 41 197-254 68-108 (283)
113 COG3074 Uncharacterized protei 70.6 14 0.0003 32.7 6.0 60 190-263 13-76 (79)
114 cd07818 SRPBCC_1 Ligand-bindin 66.2 57 0.0012 31.1 10.2 29 400-428 6-34 (150)
115 PRK13922 rod shape-determining 64.7 8.7 0.00019 41.7 4.7 40 196-253 70-109 (276)
116 KOG4343 bZIP transcription fac 62.5 16 0.00034 43.4 6.3 20 238-257 317-336 (655)
117 PLN00188 enhanced disease resi 61.7 28 0.00061 43.0 8.5 157 609-801 195-361 (719)
118 PF12711 Kinesin-relat_1: Kine 60.1 18 0.00039 33.3 5.0 47 199-260 21-67 (86)
119 KOG0971 Microtubule-associated 56.5 31 0.00068 43.3 7.6 55 200-260 337-391 (1243)
120 KOG0709 CREB/ATF family transc 52.9 1.1E+02 0.0023 36.2 10.8 97 137-261 218-317 (472)
121 PF04880 NUDE_C: NUDE protein, 49.8 15 0.00033 37.7 3.1 20 238-257 25-44 (166)
122 KOG1146 Homeobox protein [Gene 49.4 20 0.00044 46.6 4.8 94 134-240 445-539 (1406)
123 PF01527 HTH_Tnp_1: Transposas 48.3 2.1 4.5E-05 36.9 -2.8 43 135-181 2-44 (76)
124 TIGR03752 conj_TIGR03752 integ 47.5 28 0.0006 41.1 5.2 55 193-260 78-132 (472)
125 smart00338 BRLZ basic region l 47.4 58 0.0013 27.7 6.0 39 194-253 25-63 (65)
126 smart00340 HALZ homeobox assoc 45.2 20 0.00044 28.8 2.5 19 241-259 16-34 (44)
127 cd07824 SRPBCC_6 Ligand-bindin 45.0 2.7E+02 0.0059 26.7 11.0 119 403-547 8-129 (146)
128 PF06156 DUF972: Protein of un 44.0 34 0.00074 32.6 4.4 21 238-258 37-57 (107)
129 COG1792 MreC Cell shape-determ 42.7 49 0.0011 36.6 6.0 42 194-253 65-106 (284)
130 PF07407 Seadorna_VP6: Seadorn 42.6 30 0.00065 38.9 4.2 23 196-218 33-55 (420)
131 COG4026 Uncharacterized protei 41.9 57 0.0012 35.1 5.9 49 187-256 141-189 (290)
132 PRK14872 rod shape-determining 41.4 25 0.00055 39.9 3.6 42 195-254 57-98 (337)
133 PRK13169 DNA replication intia 39.1 54 0.0012 31.5 4.9 19 238-256 37-55 (110)
134 PF00170 bZIP_1: bZIP transcri 38.7 1.1E+02 0.0024 25.9 6.4 23 194-216 25-47 (64)
135 cd07823 SRPBCC_5 Ligand-bindin 38.5 16 0.00034 35.3 1.3 26 649-674 3-28 (146)
136 KOG4403 Cell surface glycoprot 36.5 90 0.002 36.5 6.8 26 338-364 398-423 (575)
137 PF06785 UPF0242: Uncharacteri 36.4 48 0.001 37.5 4.6 72 180-263 54-125 (401)
138 cd07812 SRPBCC START/RHO_alpha 35.8 3E+02 0.0066 24.1 11.1 35 401-439 4-38 (141)
139 PF14197 Cep57_CLD_2: Centroso 35.2 97 0.0021 27.4 5.5 45 198-256 22-66 (69)
140 PF15058 Speriolin_N: Sperioli 34.6 54 0.0012 34.4 4.4 38 199-258 9-46 (200)
141 PF14389 Lzipper-MIP1: Leucine 32.7 2.6E+02 0.0055 25.7 8.0 70 186-258 6-75 (88)
142 cd07819 SRPBCC_2 Ligand-bindin 32.7 34 0.00074 31.8 2.5 29 647-675 4-32 (140)
143 PF10604 Polyketide_cyc2: Poly 32.2 43 0.00093 30.9 3.1 28 648-675 5-32 (139)
144 cd08865 SRPBCC_10 Ligand-bindi 32.2 28 0.00062 32.0 1.9 28 648-675 2-29 (140)
145 TIGR00219 mreC rod shape-deter 30.9 1.5E+02 0.0032 32.8 7.4 43 200-260 64-107 (283)
146 cd07821 PYR_PYL_RCAR_like Pyra 30.3 38 0.00083 31.2 2.4 27 648-674 4-30 (140)
147 cd05018 CoxG Carbon monoxide d 29.7 29 0.00064 32.4 1.5 27 649-675 5-31 (144)
148 KOG2761 START domain-containin 29.7 26 0.00056 37.5 1.2 182 608-832 25-213 (219)
149 cd08866 SRPBCC_11 Ligand-bindi 29.6 35 0.00076 32.3 2.0 28 648-675 2-29 (144)
150 TIGR02449 conserved hypothetic 29.0 1.8E+02 0.0038 25.7 5.9 41 199-260 11-51 (65)
151 cd08901 SRPBCC_CalC_Aha1-like_ 29.0 34 0.00075 32.7 1.9 27 647-673 2-28 (136)
152 cd07817 SRPBCC_8 Ligand-bindin 28.8 41 0.00089 31.3 2.3 28 648-675 3-30 (139)
153 TIGR03752 conj_TIGR03752 integ 28.4 1.3E+02 0.0027 35.8 6.5 26 193-218 71-96 (472)
154 PRK13729 conjugal transfer pil 28.2 1.5E+02 0.0032 35.3 7.0 63 179-255 60-122 (475)
155 cd08862 SRPBCC_Smu440-like Lig 26.8 46 0.001 30.9 2.3 30 646-675 2-31 (138)
156 cd07814 SRPBCC_CalC_Aha1-like 26.7 39 0.00086 31.4 1.8 28 648-675 3-30 (139)
157 cd07825 SRPBCC_7 Ligand-bindin 26.1 47 0.001 31.4 2.2 26 649-674 4-29 (144)
158 cd07812 SRPBCC START/RHO_alpha 25.9 46 0.001 29.5 2.0 27 649-675 3-29 (141)
159 PF04967 HTH_10: HTH DNA bindi 25.9 72 0.0016 26.8 3.0 37 140-176 1-39 (53)
160 KOG3119 Basic region leucine z 25.6 1.5E+02 0.0032 32.7 6.2 22 240-261 232-253 (269)
161 PRK00888 ftsB cell division pr 25.1 90 0.002 29.6 3.8 42 176-218 16-57 (105)
162 KOG4571 Activating transcripti 24.7 2.1E+02 0.0045 32.0 7.0 28 191-218 244-271 (294)
163 PF05494 Tol_Tol_Ttg2: Toluene 24.2 1.8E+02 0.0038 29.2 6.1 56 433-493 85-140 (170)
164 cd07818 SRPBCC_1 Ligand-bindin 24.1 1.4E+02 0.0029 28.5 5.0 32 647-678 4-35 (150)
165 KOG4343 bZIP transcription fac 23.7 87 0.0019 37.6 4.1 22 198-219 312-333 (655)
166 PRK03975 tfx putative transcri 22.8 65 0.0014 32.3 2.5 46 138-189 5-50 (141)
167 KOG0288 WD40 repeat protein Ti 22.4 1.9E+02 0.0041 33.8 6.3 24 195-218 27-50 (459)
168 KOG3119 Basic region leucine z 22.1 43 0.00093 36.8 1.2 26 238-263 223-248 (269)
169 cd06171 Sigma70_r4 Sigma70, re 21.5 26 0.00057 26.8 -0.4 42 139-185 10-51 (55)
170 PF03364 Polyketide_cyc: Polyk 21.3 4.1E+02 0.009 24.5 7.6 103 405-535 2-106 (130)
171 KOG3755 SATB1 matrix attachmen 21.0 21 0.00046 42.9 -1.4 56 137-192 695-758 (769)
172 cd07822 SRPBCC_4 Ligand-bindin 20.8 74 0.0016 29.3 2.4 27 649-675 4-30 (141)
173 PF07151 DUF1391: Protein of u 20.2 49 0.0011 26.8 0.9 8 551-558 38-45 (49)
174 PRK00888 ftsB cell division pr 20.2 1.3E+02 0.0027 28.6 3.7 37 180-216 26-62 (105)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=9.3e-90 Score=710.20 Aligned_cols=229 Identities=61% Similarity=1.029 Sum_probs=221.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHh
Q 003261 336 RSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 415 (835)
Q Consensus 336 ~~~l~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~l 415 (835)
|++|++||++||+||++||++++|||+++.+++ +|+||+|||.++|++..|.++.||++|||||||+|+||+.+|||+|
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~-~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~l 79 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMK-PEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEIL 79 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCC-ccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHH
Confidence 578999999999999999999999999998877 7999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecCCeEEEEEEeccCccC
Q 003261 416 MDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRE 495 (835)
Q Consensus 416 mD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~g~waVvDvSld~~~~ 495 (835)
||+++|.++||+||++|+|++||++|.+|+|||+|||||+|||+||||||+|||||||||||++||+|||||||+|..+.
T Consensus 80 mD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~ 159 (229)
T cd08875 80 MDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT 159 (229)
T ss_pred hChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred CCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003261 496 TSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 565 (835)
Q Consensus 496 ~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqce 565 (835)
.+..+.++||||+|||||||||+|||||||||||+|||++.+|.+||+|++||+||||+||+++||||||
T Consensus 160 ~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 160 APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 4434458999999999999999999999999999999999999999999999999999999999999997
No 2
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.74 E-value=1.4e-17 Score=168.89 Aligned_cols=202 Identities=22% Similarity=0.333 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHhhcCCCCceeecc--CCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcCh
Q 003261 341 ELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 418 (835)
Q Consensus 341 ~lA~~Am~El~~la~~~eplWi~~~--~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~ 418 (835)
|+|+++|.+++++++.++.-|.... ++. +.|.+..+.. .+..+..-|..++|...+.++++.|+|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~~~~-----~~~~~~~~k~~~~v~~~~~~~~~~~~~~ 68 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDKKNG-------DVYYKKVSPS-----DSCPIKMFKAEGVVPASPEQVVEDLLDD 68 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEETTT-------CEEEEEEECS-----SSTSCEEEEEEEEESSCHHHHHHHHHCG
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEccCCC-------eEEEEEeCcc-----ccccceEEEEEEEEcCChHHHHHHHHhh
Confidence 5899999999999999999998875 332 1222222111 1246778999999999999999999998
Q ss_pred h-hhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecCCeEEEEEEeccCccCCC
Q 003261 419 N-RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETS 497 (835)
Q Consensus 419 ~-~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~g~waVvDvSld~~~~~~ 497 (835)
. +|-.++- .+..++.++.+ ..|..++.++..++|+.| |||.++|++++.++|.|+|+..|++.-...+
T Consensus 69 ~~~Wd~~~~----~~~~le~~~~~------~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~ 137 (206)
T PF01852_consen 69 REQWDKMCV----EAEVLEQIDED------TDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQYPP 137 (206)
T ss_dssp GGHHSTTEE----EEEEEEEEETT------EEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTTSST
T ss_pred Hhhcccchh----hheeeeecCCC------CeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeeccccccc
Confidence 8 9998844 47777777743 578888889999999999 9999999999999999999999998654433
Q ss_pred CCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003261 498 GAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 565 (835)
Q Consensus 498 ~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqce 565 (835)
..+.++|+..++||++|++.++|.|+||+|-|++..-+...-+++.++.+...--.+.+.+.|++|++
T Consensus 138 ~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 138 NSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQKK 205 (206)
T ss_dssp T-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred cccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 13358999999999999999999999999999999999999999999999999989999999988865
No 3
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.71 E-value=4e-16 Score=158.66 Aligned_cols=202 Identities=34% Similarity=0.523 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHhhcCCCCceeeccC--CCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhh-HHHHhcCh
Q 003261 342 LALAAMDELVKMAQTDEPLWIRSFE--GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLA-LVETLMDP 418 (835)
Q Consensus 342 lA~~Am~El~~la~~~eplWi~~~~--~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~-LVe~lmD~ 418 (835)
-|+.++.|+++++...+..|....+ .+ ..|.+.+ .+.+..+.+-|..++|...+.+ +.++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~------~~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~ 68 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSENENG-------DEVRSIL------SPGRSPGEASRAVGVVPMVCADLVEELMDDL 68 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEccccCCc-------ceEEEEc------cCCCCceEEEEEEEEEecChHHHHHHHHhcc
Confidence 3678899999999999999998764 22 1111111 1123567899999999999998 55666665
Q ss_pred hhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecCCeEEEEEEeccCccCCCC
Q 003261 419 NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSG 498 (835)
Q Consensus 419 ~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~g~waVvDvSld~~~~~~~ 498 (835)
.+...+-..+..++.++.++.+ ..|......+.. +|+ ..|||.++|++++.++|.|+|+..|++.-.. +.
T Consensus 69 -~~r~~Wd~~~~~~~~ie~~~~~------~~i~~~~~~~~~-~p~-~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-p~ 138 (206)
T smart00234 69 -RYRPEWDKNVAKAETLEVIDNG------TVIYHYVSKFVA-GPV-SPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-PP 138 (206)
T ss_pred -cchhhCchhcccEEEEEEECCC------CeEEEEEEeccc-CcC-CCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-CC
Confidence 2222233334557888877643 233333333333 354 5599999999999999999999999986432 21
Q ss_pred CCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHH
Q 003261 499 APAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 566 (835)
Q Consensus 499 ~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqcer 566 (835)
.+.++|+..++||++|+++++|.|+|||+.|++..-+..+-+.+.++.++....+++|.+.|+++|++
T Consensus 139 ~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~~~ 206 (206)
T smart00234 139 TSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHCAK 206 (206)
T ss_pred CCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHHhcC
Confidence 23589999999999999999999999999999999998889999999999999999999999999973
No 4
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.66 E-value=8.5e-17 Score=173.01 Aligned_cols=68 Identities=32% Similarity=0.446 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHHHh
Q 003261 129 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 196 (835)
Q Consensus 129 ~~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e 196 (835)
..++|||+|..|+..|+.+||+.|+..+|.+..+|++||+.|+|++.||||||||||-|+||+++.++
T Consensus 149 ~~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~ 216 (307)
T KOG0842|consen 149 GKRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKA 216 (307)
T ss_pred ccccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhh
Confidence 35567778888999999999999999999999999999999999999999999999999999876644
No 5
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.59 E-value=1.1e-15 Score=154.79 Aligned_cols=65 Identities=34% Similarity=0.433 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHH
Q 003261 130 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 194 (835)
Q Consensus 130 ~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 194 (835)
+.+|||.|+.|+..|+..||..|+..+|.+..+|..||++|.|++.||||||||||.||||+..-
T Consensus 101 ~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~aa 165 (268)
T KOG0485|consen 101 DDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYAA 165 (268)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHhh
Confidence 45788899999999999999999999999999999999999999999999999999999987643
No 6
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.59 E-value=6.4e-16 Score=157.95 Aligned_cols=78 Identities=33% Similarity=0.527 Sum_probs=73.3
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHHHhhhHHHHHhHHHHHhhHhHH
Q 003261 138 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIR 215 (835)
Q Consensus 138 tr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~ 215 (835)
.|||.+|+..||+.|+...|..+.+|..||++|||.+|||+|||||||+|||.++...++..|+.+.+.|+.+|..+.
T Consensus 55 ~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq 132 (198)
T KOG0483|consen 55 RRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSENDRLQ 132 (198)
T ss_pred ccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhhHHH
Confidence 469999999999999999999999999999999999999999999999999999999999999999999988765444
No 7
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.58 E-value=8.2e-16 Score=167.41 Aligned_cols=66 Identities=36% Similarity=0.473 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHH
Q 003261 129 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 194 (835)
Q Consensus 129 ~~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 194 (835)
..+|+||.|+.||..|+.+||+.|++.+|.+..+|.+||++|||+..|||+||||||+||||+..+
T Consensus 168 ~pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 168 TPKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred CCcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHh
Confidence 447778889999999999999999999999999999999999999999999999999999987765
No 8
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.58 E-value=2.2e-15 Score=155.99 Aligned_cols=70 Identities=31% Similarity=0.430 Sum_probs=64.7
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHHHhhhHHHHHhH
Q 003261 136 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQEND 205 (835)
Q Consensus 136 ~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~ 205 (835)
-||.||..|+++||+.|++.+||+...|+-||.++.|.+.+|+|||||||+||||+.++........|+-
T Consensus 144 ~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg~sT~maeyg 213 (332)
T KOG0494|consen 144 FRTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRWGGSTIMAEYG 213 (332)
T ss_pred ccchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhcCcchhhhhhc
Confidence 3889999999999999999999999999999999999999999999999999999999887776666553
No 9
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.57 E-value=1.2e-15 Score=156.26 Aligned_cols=76 Identities=26% Similarity=0.352 Sum_probs=68.0
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHHHhhhH
Q 003261 124 DLDAADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSL 199 (835)
Q Consensus 124 ~~~~~~~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e~~~ 199 (835)
..-.++.+|.||.||.++.-||+.|.+.|+++.|.-..+|.+||..|||+..||||||||||.|.||..+..+...
T Consensus 113 ~~~Ngk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~g~~~~ 188 (245)
T KOG0850|consen 113 RRPNGKGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKKQGSGPV 188 (245)
T ss_pred eccCCCcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHhcCCCcc
Confidence 3445667778899999999999999999999999999999999999999999999999999999999887555443
No 10
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.54 E-value=1.4e-15 Score=162.44 Aligned_cols=65 Identities=34% Similarity=0.475 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 195 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~ 195 (835)
.+.||.|+.||..|+.+||+.|+.++|.+...|.|||..|.|+++||||||||||+||||..+..
T Consensus 157 ~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~ 221 (261)
T KOG0489|consen 157 GKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAK 221 (261)
T ss_pred CCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccc
Confidence 45688899999999999999999999999999999999999999999999999999999866543
No 11
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.54 E-value=7.3e-15 Score=158.29 Aligned_cols=64 Identities=39% Similarity=0.445 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 194 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 194 (835)
++.||||.-+|+.|+.+||+.|-.+.|.+.+.|.+|++.|+|++|||||||||||+|+||..++
T Consensus 233 ~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re 296 (308)
T KOG0487|consen 233 RRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNRE 296 (308)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhh
Confidence 4557778889999999999999999999999999999999999999999999999999988754
No 12
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.54 E-value=3.1e-15 Score=148.35 Aligned_cols=64 Identities=34% Similarity=0.479 Sum_probs=61.3
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHHH
Q 003261 132 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 195 (835)
Q Consensus 132 kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~ 195 (835)
|.||.||.||.+|+..||..|+.++|-.-.+|++||+.|+|++.||||||||||+|.||++.+.
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHh
Confidence 6688899999999999999999999999999999999999999999999999999999988775
No 13
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.53 E-value=1.5e-15 Score=138.23 Aligned_cols=65 Identities=31% Similarity=0.533 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHH
Q 003261 129 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 193 (835)
Q Consensus 129 ~~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 193 (835)
.++|.||-|+.||..|+.+||+.|.+.+||+...|++||.++.|++.+|||||||||+|.||+.+
T Consensus 13 ekrKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr 77 (125)
T KOG0484|consen 13 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQER 77 (125)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHH
Confidence 34566778899999999999999999999999999999999999999999999999999997553
No 14
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.47 E-value=4.2e-14 Score=142.79 Aligned_cols=65 Identities=38% Similarity=0.505 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHH
Q 003261 129 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 193 (835)
Q Consensus 129 ~~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 193 (835)
+.+..||.|+-||.+|+..||+.|++.+|.+..+|.+++..|.|++.||||||||||+|.||.++
T Consensus 140 Khk~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQe 204 (246)
T KOG0492|consen 140 KHKPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQE 204 (246)
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHH
Confidence 33445788999999999999999999999999999999999999999999999999999998664
No 15
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.44 E-value=2.5e-14 Score=149.06 Aligned_cols=66 Identities=32% Similarity=0.415 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHHHh
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 196 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e 196 (835)
+.|-|-|..+|..|..+||+.|...+|.++..+.|||.-|+|++|||||||||||+|+||.++++.
T Consensus 197 RTkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk~ 262 (317)
T KOG0848|consen 197 RTKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKKR 262 (317)
T ss_pred ecccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHHH
Confidence 334566778999999999999999999999999999999999999999999999999998776643
No 16
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.44 E-value=6e-14 Score=143.49 Aligned_cols=67 Identities=30% Similarity=0.513 Sum_probs=62.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHHH
Q 003261 129 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 195 (835)
Q Consensus 129 ~~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~ 195 (835)
..+|.||.||+||.+|+++||+.|.+..||+...|++||.+|+|.+.+|||||.|||+|+|++++.+
T Consensus 33 ~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 33 GPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred cchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 3567789999999999999999999999999999999999999999999999999999999877664
No 17
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.40 E-value=8.8e-14 Score=114.64 Aligned_cols=57 Identities=47% Similarity=0.737 Sum_probs=54.7
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHH
Q 003261 134 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 190 (835)
Q Consensus 134 rr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 190 (835)
||+|++||.+|+..||..|..++||+..++++||.++||++.||++||||||.++|+
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 567889999999999999999999999999999999999999999999999999985
No 18
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.36 E-value=1.6e-12 Score=135.03 Aligned_cols=60 Identities=35% Similarity=0.566 Sum_probs=56.3
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHH
Q 003261 134 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 193 (835)
Q Consensus 134 rr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 193 (835)
||.|+-||.+|++.|++.|++++|.++..|++||.+|+|.+.||||||||+|+|.||-.-
T Consensus 247 KRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsTg 306 (342)
T KOG0493|consen 247 KRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKSTG 306 (342)
T ss_pred cCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhccC
Confidence 566888999999999999999999999999999999999999999999999999997543
No 19
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.27 E-value=2.9e-12 Score=136.50 Aligned_cols=62 Identities=31% Similarity=0.529 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
.|+||.|+.||.+|+++||..|++++||+...|++||...+|++.+|+|||.|||+||||++
T Consensus 110 ~KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrE 171 (351)
T KOG0486|consen 110 SKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 171 (351)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhh
Confidence 47788899999999999999999999999999999999999999999999999999999644
No 20
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.25 E-value=1.4e-10 Score=114.97 Aligned_cols=189 Identities=18% Similarity=0.254 Sum_probs=137.9
Q ss_pred HHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcChhhhhhh
Q 003261 345 AAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDPNRWAEM 424 (835)
Q Consensus 345 ~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~~~W~~~ 424 (835)
+|..+++.+.+.+ .-|-...+.+ +..-|.+.++.. ....-|..+.|..++.++.++|+|.+....-
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~~-----~v~vy~~~~~~~--------~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w 67 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEKD-----GVKIYTKPYEDS--------GLKLLKAEGVIPASPEQVFELLMDIDLRKKW 67 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEECC-----cEEEEEecCCCC--------CceeEEEEEEECCCHHHHHHHHhCCchhhch
Confidence 4667888887766 6898764432 122244433221 3467899999999999999999994333222
Q ss_pred cccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecCCeEEEEEEeccCccCCCCCCCccc
Q 003261 425 FPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVN 504 (835)
Q Consensus 425 Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~g~waVvDvSld~~~~~~~~~~~~~ 504 (835)
.+ .+.+++.++.+.. ...++|..+..|.| +..|||.++|++.+.++|.++|+..|+|.-. .+..+.++|
T Consensus 68 ~~-~~~~~~vl~~~~~--------~~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~-~p~~~~~vR 136 (193)
T cd00177 68 DK-NFEEFEVIEEIDE--------HTDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHDS-HPKEKGYVR 136 (193)
T ss_pred hh-cceEEEEEEEeCC--------CeEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCCC-CCCCCCcEE
Confidence 22 2334555555432 27899999999999 9999999999999999999999999999741 122225799
Q ss_pred eeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHH
Q 003261 505 CRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQR 562 (835)
Q Consensus 505 ~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqR 562 (835)
++.+++|++|+++++|.|+||++-|++..-+.. ..++++.+.-.+..++..++.
T Consensus 137 ~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~iP----~~~~~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 137 AEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSIP----KSLVNSAAKKQLASFLKDLRK 190 (193)
T ss_pred EEEEccEEEEEECCCCCEEEEEEEeeCCCCCcc----HHHHHhhhhhccHHHHHHHHH
Confidence 999999999999999999999999999886543 445666666666777766644
No 21
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.23 E-value=9.8e-12 Score=104.04 Aligned_cols=53 Identities=15% Similarity=0.378 Sum_probs=50.6
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCC----CCHHHHHHHHHhhcccceeEEeecchhh
Q 003261 133 RKKRYHRHTPQQIQELESLFKECPH----PDEKQRLELSKRLCLETRQVKFWFQNRR 185 (835)
Q Consensus 133 krr~Rtr~T~~Ql~~LE~~F~~~~y----Ps~~~R~eLA~~LgLs~rQVkvWFQNRR 185 (835)
+||.||.||++|+..||..|+..+| |+...|.+||..+||++++|||||||.+
T Consensus 1 ~kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 4788999999999999999999999 9999999999999999999999999964
No 22
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.23 E-value=4.2e-12 Score=134.27 Aligned_cols=64 Identities=31% Similarity=0.382 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHH
Q 003261 130 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 193 (835)
Q Consensus 130 ~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 193 (835)
...-||-||-||.+||..||+.|-+..|-+...|.+||..|+|.+.-|||||||||+|+|||..
T Consensus 178 ~dqmRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQRl 241 (408)
T KOG0844|consen 178 DDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 241 (408)
T ss_pred cHHHHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhhh
Confidence 3455788999999999999999999999999999999999999999999999999999997653
No 23
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.23 E-value=5.1e-12 Score=125.40 Aligned_cols=65 Identities=32% Similarity=0.522 Sum_probs=58.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHHHh
Q 003261 132 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 196 (835)
Q Consensus 132 kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e 196 (835)
..+++|+|.|.+|+.+|++.|+.++||+...|..|+..|+|+++-||+||||||++.|++.....
T Consensus 50 ~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~ 114 (156)
T COG5576 50 PPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKV 114 (156)
T ss_pred cCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccch
Confidence 34666778899999999999999999999999999999999999999999999999998766544
No 24
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.22 E-value=3.9e-12 Score=103.95 Aligned_cols=55 Identities=45% Similarity=0.786 Sum_probs=51.7
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHH
Q 003261 135 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 189 (835)
Q Consensus 135 r~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 189 (835)
+.|++++.+|+..||..|..++||+..++.+||.++||+..||+.||+|||.+.|
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 4567799999999999999999999999999999999999999999999998864
No 25
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.21 E-value=1.2e-12 Score=128.34 Aligned_cols=65 Identities=34% Similarity=0.462 Sum_probs=60.8
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHHHh
Q 003261 132 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 196 (835)
Q Consensus 132 kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e 196 (835)
+++|-|+.|+..|+..||+.|+..+|.+..+|.+||..|+|+++|||.||||||+|.||++++.+
T Consensus 99 ~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 99 RRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred HhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 46778999999999999999999999999999999999999999999999999999998877644
No 26
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.21 E-value=5.7e-12 Score=103.64 Aligned_cols=56 Identities=48% Similarity=0.832 Sum_probs=53.1
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHH
Q 003261 135 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 190 (835)
Q Consensus 135 r~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 190 (835)
+++..++.+|+..||..|..++||+..++.+||.++||+++||+.||+|||.+.|+
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999999999999999999999999999999885
No 27
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.17 E-value=2.3e-11 Score=127.93 Aligned_cols=77 Identities=26% Similarity=0.412 Sum_probs=70.5
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHHHhhhHHHHHhHHHH
Q 003261 132 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLR 208 (835)
Q Consensus 132 kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~ 208 (835)
..||.|+.+|+.|++.|+..|+..++|-...|++|+.++||..|.|||||||||+|+||.++......+.|-...++
T Consensus 166 ~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR~RWgqyfrsmK 242 (383)
T KOG4577|consen 166 SNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWGQYFRSMK 242 (383)
T ss_pred ccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcchhHHHHHHHHhh
Confidence 34788999999999999999999999999999999999999999999999999999999999888888877665444
No 28
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.13 E-value=3.3e-11 Score=132.71 Aligned_cols=62 Identities=26% Similarity=0.414 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
.|||||||.|+...+..||++|.+|++|+..++.+||.+|+|++..|+|||+|||.|+||..
T Consensus 292 ~RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~ 353 (398)
T KOG3802|consen 292 SRKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRIT 353 (398)
T ss_pred ccccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCC
Confidence 47888999999999999999999999999999999999999999999999999999999644
No 29
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.09 E-value=2.6e-11 Score=123.47 Aligned_cols=64 Identities=34% Similarity=0.493 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHH
Q 003261 130 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 193 (835)
Q Consensus 130 ~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 193 (835)
..++|..|..|+..||..||+.|+..+|+--.+|.+||..+|+++.||+|||||||+||||+..
T Consensus 164 dG~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhA 227 (288)
T KOG0847|consen 164 NGQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHA 227 (288)
T ss_pred CccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhc
Confidence 4566667788999999999999999999999999999999999999999999999999998764
No 30
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.05 E-value=1.3e-08 Score=105.97 Aligned_cols=201 Identities=13% Similarity=0.186 Sum_probs=147.8
Q ss_pred HHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEE-EechhhHHHHhcCh---h
Q 003261 344 LAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMV-IINSLALVETLMDP---N 419 (835)
Q Consensus 344 ~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V-~~~~~~LVe~lmD~---~ 419 (835)
++.+++|+.++..+ .-|-...+... .+.|.+. ..+...-.-|..+++ ...+..+.+.|+|. .
T Consensus 9 ~~~~~~~~~~~~~~-~~W~~~~~~~g---------i~iy~r~----~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~ 74 (222)
T cd08871 9 DADFEEFKKLCDST-DGWKLKYNKNN---------VKVWTKN----PENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRK 74 (222)
T ss_pred HHHHHHHHHHhcCC-CCcEEEEcCCC---------eEEEEee----CCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhh
Confidence 37889999999654 47987643320 2233221 122333455776765 57889999999995 6
Q ss_pred hhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecCCeEEEEEEeccCccCCCCC
Q 003261 420 RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGA 499 (835)
Q Consensus 420 ~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~g~waVvDvSld~~~~~~~~ 499 (835)
+|-..+ ..++.++.+. ....++|..+..|-| |..|||.++|..+..+ |.++|+..|++.-. .+..
T Consensus 75 ~Wd~~~----~e~~~ie~~d--------~~~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~-~P~~ 139 (222)
T cd08871 75 TWDSNM----IESFDICQLN--------PNNDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKHKK-YPPR 139 (222)
T ss_pred hhhhhh----ceeEEEEEcC--------CCCEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccCCC-CCCC
Confidence 676652 2356666554 224789999999988 8999999999998776 88899999987432 2222
Q ss_pred CCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 003261 500 PAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSA 577 (835)
Q Consensus 500 ~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqcerla~l~~~~i~~ 577 (835)
..++|.....+|++|++++++.|+|||+-|++..-+ +|. -+++..+.-.+-.++..|+++|+...-.+..+-|.
T Consensus 140 ~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~-IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~~~ 213 (222)
T cd08871 140 KGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS-LPK---WVVNKATTKLAPKVMKKLHKAALKYPEWKAKNNPE 213 (222)
T ss_pred CCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC-cCH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 358999999999999999999999999999988765 443 34666666777899999999999999988877664
No 31
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=98.97 E-value=1.8e-08 Score=103.90 Aligned_cols=196 Identities=15% Similarity=0.221 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHH-hcC
Q 003261 339 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVET-LMD 417 (835)
Q Consensus 339 l~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~-lmD 417 (835)
-..+++.|++|++.+.. ++-|-...+.. +..+.|.+.. .| ..-.-|..++|...+.++++. |+|
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~--------~~i~i~~r~~----~~-~~~~~k~~~~i~~~~~~v~~~l~~d 70 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTT--------WGDVVYSRNV----PG-VGKVFRLTGVLDCPAEFLYNELVLN 70 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecC--------CCCEEEEEEc----CC-CceEEEEEEEEcCCHHHHHHHHHcC
Confidence 57889999999999954 55897654221 0122232221 11 114578889999999999764 545
Q ss_pred h---hhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeeccc-ccccccceeeEEeeeceecCCeEEEEEEeccCc
Q 003261 418 P---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL-SPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTI 493 (835)
Q Consensus 418 ~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~-SPLvp~Re~~flRyckq~~~g~waVvDvSld~~ 493 (835)
. .+|-..| ..++.++.+. +...++|.-+.-+ .++|..|||.++|+.++.+ +.++|+..|++.-
T Consensus 71 ~~~~~~Wd~~~----~~~~~i~~~d--------~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~ 137 (208)
T cd08868 71 VESLPSWNPTV----LECKIIQVID--------DNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHP 137 (208)
T ss_pred ccccceecCcc----cceEEEEEec--------CCcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccCC
Confidence 3 5677662 2244444443 2235666444333 3689999999999999866 6799999998732
Q ss_pred cCCCCCCCccceeecCCcceEeecCC--CccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 003261 494 RETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 567 (835)
Q Consensus 494 ~~~~~~~~~~~~~r~PSGclIq~~~n--G~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqcerl 567 (835)
. .|..+.++|+...++|++|+++++ +.|+|||+-|++..-+ +|.- ++++.+.-+.-.+++.|+++|+.|
T Consensus 138 ~-~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~~---lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 138 A-MPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQY---LVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred C-CCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-Ccce---eeehhhHHHHHHHHHHHHHHHhhC
Confidence 1 122235899999999999999987 6899999999987755 3332 377778888889999999998753
No 32
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=98.94 E-value=3.6e-08 Score=101.59 Aligned_cols=195 Identities=15% Similarity=0.195 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcC-
Q 003261 339 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD- 417 (835)
Q Consensus 339 l~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD- 417 (835)
+-.+|..|.+|++++.. .+.-|....+.. +.+.|.+. ...+..-.-|..+.+..++.++++.|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~---------~i~v~~~~----~~~~~~~~~k~~~~i~~~~~~v~~~l~d~ 68 (206)
T cd08867 3 FKVIAEKLANEALQYIN-DTDGWKVLKTVK---------NITVSWKP----STEFTGHLYRAEGIVDALPEKVIDVIIPP 68 (206)
T ss_pred HHHHHHHHHHHHHHHhc-CcCCcEEEEcCC---------CcEEEEec----CCCCCCEEEEEEEEEcCCHHHHHHHHHhc
Confidence 34688899999999987 447897753221 12222221 1122222358888999999999999998
Q ss_pred ----hhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecc-cccccccceeeEEeeeceecCCeEEEEEEeccC
Q 003261 418 ----PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQV-LSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDT 492 (835)
Q Consensus 418 ----~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v-~SPLvp~Re~~flRyckq~~~g~waVvDvSld~ 492 (835)
+.+|... +..++.++-|.. ...++|..+-- +.++|..|||.++||.++.++|.++|+-+|++.
T Consensus 69 ~~~~r~~Wd~~----~~~~~~le~id~--------~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~h 136 (206)
T cd08867 69 CGGLRLKWDKS----LKHYEVLEKISE--------DLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDI 136 (206)
T ss_pred Ccccccccccc----ccceEEEEEeCC--------CeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccC
Confidence 4678755 455777776642 12456653322 245799999999999999999999999999864
Q ss_pred ccCCCCCCCccceeecCCcceEeecC--CCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHH
Q 003261 493 IRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQC 564 (835)
Q Consensus 493 ~~~~~~~~~~~~~~r~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqc 564 (835)
-. .|..+.++|+...++|++|++.+ ++.|+|||+-|++.--+ +| +-++++.++=+.--|+..|++|.
T Consensus 137 p~-~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~-iP---~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 137 PE-RPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGM-IP---QSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred CC-CCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCC-Cc---HHHHHhhhhhhHHHHHHHHHHhc
Confidence 42 22223589999999999999886 57899999999987643 33 45577777777778999998764
No 33
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.91 E-value=7.2e-10 Score=114.82 Aligned_cols=64 Identities=27% Similarity=0.326 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHH
Q 003261 130 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 193 (835)
Q Consensus 130 ~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 193 (835)
..++|+.|+.|+..|+++||+.|++.+||+...|+.||..+++++..|++||||||+||+++..
T Consensus 57 ~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 57 KFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred hccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence 4566788899999999999999999999999999999999999999999999999999997654
No 34
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.77 E-value=1.4e-07 Score=97.95 Aligned_cols=172 Identities=16% Similarity=0.198 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCC-CCCCceeeeeceeEEEechhhHHHHhcC
Q 003261 339 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLK-PNGFVTEASRETGMVIINSLALVETLMD 417 (835)
Q Consensus 339 l~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~-~~g~~~EAsR~~g~V~~~~~~LVe~lmD 417 (835)
...|+++|++|++++-+ +.-.|-.-.++. +...+ .+ ...+.+---|..|+|..++.+|+|.+.|
T Consensus 3 ~~~~~~~~~~~~l~~~~-~~~gWk~~k~~~---------~~~v~-----~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~ 67 (204)
T cd08904 3 FKKIAQETSQEVLGYSR-DTSGWKVVKTSK---------KITVS-----WKPSRKYHGNLYRVEGIIPESPAKLIQFMYQ 67 (204)
T ss_pred HHHHHHHHHHHHHhhhh-cccCCeEEecCC---------ceEEE-----EEEcCCCCceEEEEEEEecCCHHHHHHHHhc
Confidence 35789999999999977 567897654331 01111 12 1234445679999999999999999998
Q ss_pred hhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeec-ccccccccceeeEEeeeceecCCeEEEEEEeccCccCC
Q 003261 418 PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ-VLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRET 496 (835)
Q Consensus 418 ~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~-v~SPLvp~Re~~flRyckq~~~g~waVvDvSld~~~~~ 496 (835)
.+...+-=+ .+..++.++-|. +...+.|.-++ .+-++|-+|||..+||.++.++|.++|..+|++.-.-
T Consensus 68 ~e~r~~Wd~-~~~~~~iie~Id--------~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~- 137 (204)
T cd08904 68 PEHRIKWDK-SLQVYKMLQRID--------SDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQC- 137 (204)
T ss_pred cchhhhhcc-cccceeeEEEeC--------CCcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCC-
Confidence 764443222 345566666554 22256675554 4557899999999999999999999999999864321
Q ss_pred CCCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccc
Q 003261 497 SGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDES 535 (835)
Q Consensus 497 ~~~~~~~~~~r~PSGclIq~~~nG--~skVtwVeH~e~d~~ 535 (835)
|..+.++|++..|+||+|++.+++ +|++||+-++++.-+
T Consensus 138 Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 138 PPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred CCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC
Confidence 222358999999999999999874 899999999776643
No 35
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.66 E-value=8.7e-07 Score=92.00 Aligned_cols=193 Identities=13% Similarity=0.208 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcCh
Q 003261 339 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 418 (835)
Q Consensus 339 l~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~ 418 (835)
..+++++|+++++.+-+ .+.-|-...+.. +.+.|.+... .+..=.-|.-|+|..++.+|++.|+|.
T Consensus 3 ~~~~~~~~~~~~l~~~~-~~~~W~~~~~~~---------~i~v~~~~~~----~~~~~~~k~e~~i~~s~~~~~~~l~d~ 68 (208)
T cd08903 3 YAELAESVADKMLLYRR-DESGWKTCRRTN---------EVAVSWRPSA----EFAGNLYKGEGIVYATLEQVWDCLKPA 68 (208)
T ss_pred HHHHHHHHHHHHHhhhc-cccCCEEEEcCC---------CEEEEeeecC----CCCCcEEEEEEEecCCHHHHHHHHHhc
Confidence 36789999999999974 677897654321 2233322110 111112688899999999999999976
Q ss_pred -----hhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeeccccc---ccccceeeEEeeeceecCCeEEEEEEec
Q 003261 419 -----NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP---LVPVREVNFLRFCKQHAEGVWAVVDVSI 490 (835)
Q Consensus 419 -----~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SP---Lvp~Re~~flRyckq~~~g~waVvDvSl 490 (835)
.+|-..+ ..++.++-|. +...+.|. ..+.| +|.+|||..+|+.++.++|.++|.-.|.
T Consensus 69 ~~~~r~~W~~~~----~~~~vle~id--------~~~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv 134 (208)
T cd08903 69 AGGLRVKWDQNV----KDFEVVEAIS--------DDVSVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNV 134 (208)
T ss_pred cchhhhhhhhcc----ccEEEEEEec--------CCEEEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEec
Confidence 5888772 2345555444 12233443 45555 7999999999999999999988777776
Q ss_pred cCccCCCCCCCccceeecCCcceEeecCC--CccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHH
Q 003261 491 DTIRETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQC 564 (835)
Q Consensus 491 d~~~~~~~~~~~~~~~r~PSGclIq~~~n--G~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqc 564 (835)
..-. -|..+.++|++..|+|++|...++ +.|+|||+-|++.-- .+| +.++++.++=...-.+..|+++.
T Consensus 135 ~h~~-~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG-~iP---~~lvn~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08903 135 EHPL-CPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSG-YLP---QTVVDSFFPASMAEFYNNLTKAV 205 (208)
T ss_pred cCCC-CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCC-CcC---HHHHHHHhhHHHHHHHHHHHHHH
Confidence 5421 122235899999999999999964 589999998887642 344 34555444434445566665554
No 36
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.63 E-value=1.6e-08 Score=112.90 Aligned_cols=63 Identities=32% Similarity=0.539 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 130 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 130 ~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
.++.+|.|+.|+..|+..||+.|+.++||+...|++||+++++++.+|++||+|||+|++|+.
T Consensus 173 ~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~ 235 (354)
T KOG0849|consen 173 QRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQH 235 (354)
T ss_pred cccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhcc
Confidence 445566788999999999999999999999999999999999999999999999999999755
No 37
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.55 E-value=2.6e-06 Score=88.59 Aligned_cols=129 Identities=17% Similarity=0.231 Sum_probs=99.1
Q ss_pred CCceeeeeceeEEEechhhHH-HHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceee
Q 003261 392 GFVTEASRETGMVIINSLALV-ETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVN 470 (835)
Q Consensus 392 g~~~EAsR~~g~V~~~~~~LV-e~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~ 470 (835)
+...-+-|....|.-.+..++ .+|.++..|-..|- .+++++-|. +...+.|--+.-|-|+ |.|||+
T Consensus 48 ~~~lk~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~~----~~~~ie~ld--------~~tdi~~y~~~~~~P~-~~RD~v 114 (205)
T cd08909 48 GNPLRLWKVSVEVEAPPSVVLNRVLRERHLWDEDFL----QWKVVETLD--------KQTEVYQYVLNCMAPH-PSRDFV 114 (205)
T ss_pred CCceEEEEEEEEeCCCHHHHHHHHHhhHhhHHhhcc----eeEEEEEeC--------CCcEEEEEEeecCCCC-CCCEEE
Confidence 344456777777777777664 46677888888743 377777665 2246777777777776 999999
Q ss_pred EEeeece-ecCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccc
Q 003261 471 FLRFCKQ-HAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDES 535 (835)
Q Consensus 471 flRyckq-~~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~ 535 (835)
.+|+-++ +++|.++|+..|++.....+ ..++|+..+=+|++|+++++|.|+||++-|++..-+
T Consensus 115 ~~R~w~~~~~~G~~vi~~~Sv~H~~~p~--~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~ 178 (205)
T cd08909 115 VLRSWRTDLPKGACSLVSVSVEHEEAPL--LGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH 178 (205)
T ss_pred EEEEEEEeCCCCcEEEEEecCCCCcCCC--CCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC
Confidence 9999765 46999999999999764322 247999999999999999999999999999987543
No 38
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.50 E-value=7.9e-08 Score=101.85 Aligned_cols=62 Identities=23% Similarity=0.433 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
..|||+|+.+.....+.||++|...+.|+.+....+|++|+|....|+|||+|.|.|.||..
T Consensus 307 ~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm~ 368 (385)
T KOG1168|consen 307 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 368 (385)
T ss_pred cccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHhh
Confidence 35677889999999999999999999999999999999999999999999999999988743
No 39
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.49 E-value=3.1e-06 Score=87.21 Aligned_cols=167 Identities=13% Similarity=0.244 Sum_probs=120.0
Q ss_pred HHHHHHHHHhhcCCCCceeeccC-CCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcCh-hhh
Q 003261 344 LAAMDELVKMAQTDEPLWIRSFE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP-NRW 421 (835)
Q Consensus 344 ~~Am~El~~la~~~eplWi~~~~-~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~-~~W 421 (835)
+.+.++|++-+...+.-|.-..+ .| .+| |.|.. +.++..-+=|..++|...+.++++.|+|. .+|
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~~~g-i~I-----~~k~~-------~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~W 70 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSSSDH-VEL-----AFKKV-------DDGHPLRLWRASTEVEAPPEEVLQRILRERHLW 70 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEecCCc-EEE-----EEEeC-------CCCCcEEEEEEEEEeCCCHHHHHHHHHHHHhcc
Confidence 46788999999988999976532 23 122 22221 22445567788899999999999877764 456
Q ss_pred hhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeece-ecCCeEEEEEEeccCccCCCCCC
Q 003261 422 AEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQ-HAEGVWAVVDVSIDTIRETSGAP 500 (835)
Q Consensus 422 ~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq-~~~g~waVvDvSld~~~~~~~~~ 500 (835)
-.. +.+++.++.|+ ....+.|..+..|-| +++|||..+|+++. .++|..+|.=.|++....-+ +
T Consensus 71 d~~----~~~~~vie~id--------~~~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p--~ 135 (197)
T cd08869 71 DDD----LLQWKVVETLD--------EDTEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVP--L 135 (197)
T ss_pred chh----hheEEEEEEec--------CCcEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCC--C
Confidence 665 23356666554 123578888888877 59999999998875 67889999999986321111 1
Q ss_pred CccceeecCCcceEeecCCCccEEEEEEeeeeccccccc
Q 003261 501 AFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQ 539 (835)
Q Consensus 501 ~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~ 539 (835)
.++|++.+++|++|++..+|.|+|||+-|++.-- .+|.
T Consensus 136 g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G-~iP~ 173 (197)
T cd08869 136 GGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRG-RSPE 173 (197)
T ss_pred CCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCC-CCCc
Confidence 4899999999999999999999999999998643 3444
No 40
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.47 E-value=1.7e-06 Score=102.42 Aligned_cols=129 Identities=17% Similarity=0.286 Sum_probs=104.3
Q ss_pred eeeeceeEEEechhhHHHHhcChh----hhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeec--cccccccccee
Q 003261 396 EASRETGMVIINSLALVETLMDPN----RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ--VLSPLVPVREV 469 (835)
Q Consensus 396 EAsR~~g~V~~~~~~LVe~lmD~~----~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~--v~SPLvp~Re~ 469 (835)
-+=|+.|+|...+.+|.|.+|+.+ +|=.. +..++-++-|. |...++|.-++ .+...+-+|||
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~----~~~~~vIE~ID--------~htdI~Y~~~~~~~~~~~ispRDF 294 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCS----FQYGSLVEEVD--------GHTAILYHRLQLDWFPMFVWPRDL 294 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhc----ccceEEEEEec--------CCeEEEEEEeccccccCccCccee
Confidence 577899999999999999999777 66554 45577777763 56678887774 45567777999
Q ss_pred eEEeeeceecCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecC--C--CccEEEEEEeeeeccccc
Q 003261 470 NFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP--N--GYSKVTWVEHAEYDESQV 537 (835)
Q Consensus 470 ~flRyckq~~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~--n--G~skVtwVeH~e~d~~~v 537 (835)
+++||-+..+||+++|+=+|+..-.- |..+.++|++..|.||+|.+++ + -.|.|+|+-|++..-|..
T Consensus 295 V~~Rywrr~eDGsYvil~~Sv~Hp~c-PP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~ 365 (719)
T PLN00188 295 CYVRYWRRNDDGSYVVLFRSREHENC-GPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV 365 (719)
T ss_pred EEEEEEEEcCCCcEEEeeeeeecCCC-CCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccc
Confidence 99999999999999999999875332 2123589999999999999964 3 379999999999988874
No 41
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.46 E-value=2.6e-06 Score=88.61 Aligned_cols=192 Identities=13% Similarity=0.206 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeecc--CCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhc
Q 003261 339 FLELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLM 416 (835)
Q Consensus 339 l~~lA~~Am~El~~la~~~eplWi~~~--~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lm 416 (835)
-..++.+|++|++++.+ .+..|-... +.| ..| |.+.||.. | -+-|.-++|..++.+|++.|.
T Consensus 6 y~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~g-i~v-----~s~~~~~~------~---k~~k~e~~i~~~~~~l~~~l~ 69 (209)
T cd08905 6 YIKQGEEALQKSLSILQ-DQEGWKTEIVAENG-DKV-----LSKVVPDI------G---KVFRLEVVVDQPLDNLYSELV 69 (209)
T ss_pred HHHHHHHHHHHHHHHhc-cccCCEEEEecCCC-CEE-----EEEEcCCC------C---cEEEEEEEecCCHHHHHHHHH
Confidence 56889999999999986 666897652 223 111 22333222 1 456667799999999995555
Q ss_pred -Ch---hhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeeccccc--ccccceeeEEeeeceecCCeEEEEEEec
Q 003261 417 -DP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCKQHAEGVWAVVDVSI 490 (835)
Q Consensus 417 -D~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SP--Lvp~Re~~flRyckq~~~g~waVvDvSl 490 (835)
|. .+|... |.-.++|.... ....++|. ..++.| +|..|||..+|+.++.+++. +++..|.
T Consensus 70 ~d~e~~~~W~~~-------~~~~~vl~~id-----~~~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s~ 135 (209)
T cd08905 70 DRMEQMGEWNPN-------VKEVKILQRIG-----KDTLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMAT 135 (209)
T ss_pred hchhhhceeccc-------chHHHHHhhcC-----CCceEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEee
Confidence 53 566665 45555554332 12245664 667766 79999999999999986654 4556665
Q ss_pred cCccCCCCCCCccceeecCCcceEeecCC--CccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003261 491 DTIRETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 565 (835)
Q Consensus 491 d~~~~~~~~~~~~~~~r~PSGclIq~~~n--G~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqce 565 (835)
+.-. -|..+.++|.+..+.|++|+++++ |.|+|||+-|++..-+ +|. .|++..++=..-.++..|+++.+
T Consensus 136 ~~~~-~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 136 HFGL-MPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPK---SIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred cCCC-CCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CCH---HHHHHHhHHhHHHHHHHHHHHHh
Confidence 4321 122225899999999999999988 9999999999987655 443 45666666666778888877754
No 42
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.38 E-value=1.1e-05 Score=84.15 Aligned_cols=196 Identities=10% Similarity=0.167 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceeec-cC-CCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHH-HH
Q 003261 338 MFLELALAAMDELVKMAQTDEPLWIRS-FE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV-ET 414 (835)
Q Consensus 338 ~l~~lA~~Am~El~~la~~~eplWi~~-~~-~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LV-e~ 414 (835)
-....+.+||+++.++... +..|.-. .+ .| .+.|.+........| |.-++|...+..|. +.
T Consensus 5 ~~~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~g----------i~V~s~~~~~~~~~f-----k~~~~v~~~~~~l~~~l 68 (209)
T cd08906 5 EYVRQGKEALAVVEQILAQ-EENWKFEKNNDNG----------DTVYTLEVPFHGKTF-----ILKAFMQCPAELVYQEV 68 (209)
T ss_pred HHHHHHHHHHHHHHHHhhc-ccCCEEEEecCCC----------CEEEEeccCCCCcEE-----EEEEEEcCCHHHHHHHH
Confidence 3567899999999999765 4579853 22 34 123322111011223 66677888888995 68
Q ss_pred hcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeeccccc--ccccceeeEEeeeceecCCeEEEEEEeccC
Q 003261 415 LMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCKQHAEGVWAVVDVSIDT 492 (835)
Q Consensus 415 lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SP--Lvp~Re~~flRyckq~~~g~waVvDvSld~ 492 (835)
|.|.+...+=.+.+ ..++.++-|+. .--+.| +.-.|.+ .|..|||..+|+.++.+++ ++++..|++.
T Consensus 69 l~D~~~~~~W~~~~-~~~~vi~~~~~--------~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~ 137 (209)
T cd08906 69 ILQPEKMVLWNKTV-SACQVLQRVDD--------NTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTH 137 (209)
T ss_pred HhChhhccccCccc-hhhhheeeccC--------CcEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEec
Confidence 88886555444442 22444444431 124557 6666664 7999999999999998888 5777788764
Q ss_pred ccCCCCCCCccceeecCCcceEeec--CCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003261 493 IRETSGAPAFVNCRRLPSGCVVQDM--PNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 565 (835)
Q Consensus 493 ~~~~~~~~~~~~~~r~PSGclIq~~--~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqce 565 (835)
-. -|..+.++|.+..++|++|++. .+|.|+|||+-|++.--+ +| +.|++..++=..-..+..|.++.+
T Consensus 138 ~~-~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~-lP---~~lvN~~~~~~~~~~~~~LR~~~~ 207 (209)
T cd08906 138 SH-KPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR-LP---RYLIHQSLAATMFEFASHLRQRIR 207 (209)
T ss_pred CC-CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 31 1222358999999999999985 577999999999987653 33 245666555555555666655543
No 43
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.34 E-value=1e-05 Score=83.61 Aligned_cols=192 Identities=14% Similarity=0.160 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCC-CCCCceeeeeceeEEEechhhHHHHhcC
Q 003261 339 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLK-PNGFVTEASRETGMVIINSLALVETLMD 417 (835)
Q Consensus 339 l~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~-~~g~~~EAsR~~g~V~~~~~~LVe~lmD 417 (835)
...+|.++-+++++--+.++-.|-.-.+.+. -.+..+ .+-|.+---|.-|+|.-.+..|++.+-+
T Consensus 3 ~~~~~~~~~~~~~~y~~~~~~~Wkl~k~~~~--------------~~v~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v~~ 68 (202)
T cd08902 3 IASKTTKLQNTLIQYHSILEEEWRVAKKSKD--------------VTVWRKPSEEFGGYLYKAQGVVEDVYNRIVDHIRP 68 (202)
T ss_pred HHHHHHHHHHHHHHhccccccCcEEEEeCCC--------------EEEEEecCCcCCCceEEEEEEecCCHHHHHHHHhc
Confidence 3567888888899987779999976433220 111222 2245555667788998999999999999
Q ss_pred ---hhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecCCeEEEEEEeccCcc
Q 003261 418 ---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIR 494 (835)
Q Consensus 418 ---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~g~waVvDvSld~~~ 494 (835)
+.+|=+. |..|+.++-|.. +++-.-|.=.-.+-++|-+|||.-|||+++.++|. ..|=||++.-.
T Consensus 69 ~~~r~~Wd~~----v~~~~Iie~Id~-------dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~ 136 (202)
T cd08902 69 GPYRLDWDSL----MTSMDIIEEFEE-------NCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEE 136 (202)
T ss_pred ccchhcccch----hhheeHhhhhcC-------CcEEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCC
Confidence 5599876 455666655542 33322355566777899999999999999999998 77788887543
Q ss_pred CCCCCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHH
Q 003261 495 ETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQ 563 (835)
Q Consensus 495 ~~~~~~~~~~~~r~PSGclIq~~~nG--~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRq 563 (835)
.- +.++|.+..|.||++++.+|| .|+.||+-++++.-+ |=+-++++.++=..=-....|+++
T Consensus 137 ~p---pg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~----LPqsiIdq~~~~~~~~F~~~Lrk~ 200 (202)
T cd08902 137 AR---PNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGM----LPQSAVDTAMASTLVNFYSDLKKA 200 (202)
T ss_pred CC---CCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCC----ccHHHHHHHhhHHHHHHHHHHHHh
Confidence 21 258999999999999999998 677889999777644 334456554444333335555443
No 44
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=98.13 E-value=4e-05 Score=79.69 Aligned_cols=183 Identities=15% Similarity=0.241 Sum_probs=124.5
Q ss_pred HHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEE-echhhHHHHhcChh---hhhhhcc
Q 003261 351 VKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVETLMDPN---RWAEMFP 426 (835)
Q Consensus 351 ~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~-~~~~~LVe~lmD~~---~W~~~Fp 426 (835)
+..-+.+.+-|-...+... .+.|.+.. .|...-.=|+.+.+. ..+..|.++|+|.+ +|...
T Consensus 17 ~~~~~~~~~~W~l~~~~~~---------i~Vy~r~~----~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~-- 81 (207)
T cd08910 17 LQQPALDGAAWELLVESSG---------ISIYRLLD----EQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQY-- 81 (207)
T ss_pred hcCCCCCCCCeEEEEecCC---------eEEEEecc----CCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHH--
Confidence 3444455677987654321 22332221 233333678888887 79999999999965 56665
Q ss_pred cccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeece-ecCC--eEEEEEEeccCccCCCCCCCcc
Q 003261 427 CMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQ-HAEG--VWAVVDVSIDTIRETSGAPAFV 503 (835)
Q Consensus 427 ~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq-~~~g--~waVvDvSld~~~~~~~~~~~~ 503 (835)
++. .++.++ .+ ..++|-.+..|-| |..||+.++|-... ..+| .|+|+..|.+.- .-|....++
T Consensus 82 -~~~---~~~~~~-------~~-~~i~y~~~k~PwP-vs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p-~~P~~~~~V 147 (207)
T cd08910 82 -VKE---LYEKEC-------DG-ETVIYWEVKYPFP-LSNRDYVYIRQRRDLDVEGRKIWVILARSTSLP-QLPEKPGVI 147 (207)
T ss_pred -HHh---heeecC-------CC-CEEEEEEEEcCCC-CCCceEEEEEEeccccCCCCeEEEEEecCCCCC-CCCCCCCCE
Confidence 221 223222 12 3678999999999 99999999964443 3344 689888887632 112223589
Q ss_pred ceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHH
Q 003261 504 NCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 566 (835)
Q Consensus 504 ~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqcer 566 (835)
|....-+|++|++..++.|+|+++-|.+--- .+|. -+++.....+.-.|+..|+..|.+
T Consensus 148 Rv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG-~IP~---wlvN~~~~~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 148 RVKQYKQSLAIESDGKKGSKVFMYYFDNPGG-MIPS---WLINWAAKNGVPNFLKDMQKACQN 206 (207)
T ss_pred EEEEEEEEEEEEeCCCCceEEEEEEEeCCCC-cchH---HHHHHHHHHhhHHHHHHHHHHHhc
Confidence 9999999999999988899999999988532 3443 257777888889999999888853
No 45
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.13 E-value=1.4e-06 Score=92.41 Aligned_cols=50 Identities=26% Similarity=0.469 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHH
Q 003261 140 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 189 (835)
Q Consensus 140 ~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 189 (835)
|-..-...|..+|..++||+..++.+||+.+||+..||-.||.|||.|+|
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDR 232 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDR 232 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhh
Confidence 44556779999999999999999999999999999999999999999988
No 46
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.02 E-value=0.00013 Score=75.86 Aligned_cols=200 Identities=16% Similarity=0.077 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcCh
Q 003261 339 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 418 (835)
Q Consensus 339 l~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~ 418 (835)
+++=+...|+|+++..+. +.-|....+.. +.++|-+.. ++-..-+-|.-|++..+...+.++|.|.
T Consensus 3 ~~~~~~~~~~~~~~~l~~-~~~W~~~~~~~---------~i~v~~r~~----~~~~~~~~k~e~~i~~~~~~~~~vl~d~ 68 (215)
T cd08877 3 KIRQEATIMQENLKDLDE-SDGWTLQKESE---------GIRVYYKFE----PDGSLLSLRMEGEIDGPLFNLLALLNEV 68 (215)
T ss_pred hHHHHHHHHHHHHhcccC-CCCcEEeccCC---------CeEEEEEeC----CCCCEEEEEEEEEecCChhHeEEEEehh
Confidence 355566788999988776 55798764431 223322211 1222467788899999999999999999
Q ss_pred hhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEE-eeecee-cCCeEEEEEEeccCccC-
Q 003261 419 NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL-RFCKQH-AEGVWAVVDVSIDTIRE- 495 (835)
Q Consensus 419 ~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fl-Ryckq~-~~g~waVvDvSld~~~~- 495 (835)
+...+-+|.. ..++.++.++- .-++.|..+-+|-| +..||+.+. +.+.++ ++|..+|+=.|++.-..
T Consensus 69 ~~~~~W~p~~-~~~~~l~~~~~--------~~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~ 138 (215)
T cd08877 69 ELYKTWVPFC-IRSKKVKQLGR--------ADKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEF 138 (215)
T ss_pred hhHhhhcccc-eeeEEEeecCC--------ceEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCccc
Confidence 8777777763 33455444431 13677878888888 888999975 567777 89999999999985432
Q ss_pred -------CCCCC-CccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003261 496 -------TSGAP-AFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 565 (835)
Q Consensus 496 -------~~~~~-~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqce 565 (835)
-|..+ .++|....-+|++|+++++|.|+|+++-|++-.-+-||.= |++...--.+...+..|+++|+
T Consensus 139 ~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~---liN~~~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 139 LKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKS---LLNFVARKFAGLLFEKIQKAAK 213 (215)
T ss_pred ccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 12233 5899999999999999999999999999966332226553 3444444446667777877765
No 47
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.95 E-value=0.00017 Score=73.20 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=106.6
Q ss_pred eeeceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeec
Q 003261 397 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK 476 (835)
Q Consensus 397 AsR~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyck 476 (835)
.-|.+++|..++.++.+++.|.+.|.+-=|. +...+||..... + -.++|..+..+=| |..|||.++|...
T Consensus 42 ~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~----~~~~~vie~~~~----~-~~i~~~~~~~p~p-vs~Rdfv~~~~~~ 111 (195)
T cd08876 42 EFKAVAEVDASIEAFLALLRDTESYPQWMPN----CKESRVLKRTDD----N-ERSVYTVIDLPWP-VKDRDMVLRSTTE 111 (195)
T ss_pred EEEEEEEEeCCHHHHHHHHhhhHhHHHHHhh----cceEEEeecCCC----C-cEEEEEEEecccc-cCCceEEEEEEEE
Confidence 5588889999999999999999888766554 445555553321 1 2556666666555 7899999876543
Q ss_pred ee-cCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHH
Q 003261 477 QH-AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQR 555 (835)
Q Consensus 477 q~-~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~r 555 (835)
.. ++|..+|.=.|.+.. -+....++|++.+-+|+.|++.++|.|+||++-|++..-+...-+.+.+. .=+..+
T Consensus 112 ~~~~~~~~~i~~~s~~~~--~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~~lv~~~~----~~~~~~ 185 (195)
T cd08876 112 QDADDGSVTITLEAAPEA--LPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPGWLANAFA----KDAPYN 185 (195)
T ss_pred EcCCCCEEEEEeecCCcc--CCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCHHHHHHHH----HHHHHH
Confidence 33 367777766666542 12122478999999999999999999999999999887544434444443 345668
Q ss_pred HHHHHHHHH
Q 003261 556 WVATLQRQC 564 (835)
Q Consensus 556 WlatLqRqc 564 (835)
++++|.++|
T Consensus 186 ~l~~l~~~~ 194 (195)
T cd08876 186 TLENLRKQL 194 (195)
T ss_pred HHHHHHHhh
Confidence 888887765
No 48
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.87 E-value=0.00014 Score=75.79 Aligned_cols=130 Identities=17% Similarity=0.212 Sum_probs=93.2
Q ss_pred CCCCceeeeeceeEEEechhhHHHHhcChh---hhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeeccccccc-c
Q 003261 390 PNGFVTEASRETGMVIINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLV-P 465 (835)
Q Consensus 390 ~~g~~~EAsR~~g~V~~~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLv-p 465 (835)
..+|+. -++|...+.+|++.|.|.. +|-.+ +.+.+||..-. ....++|..+..|=|+. +
T Consensus 44 ~~~~~g-----e~~v~as~~~v~~ll~D~~~r~~Wd~~-------~~~~~vl~~~~-----~d~~i~y~~~~~Pwp~~~~ 106 (205)
T cd08874 44 YHGFLG-----AGVIKAPLATVWKAVKDPRTRFLYDTM-------IKTARIHKTFT-----EDICLVYLVHETPLCLLKQ 106 (205)
T ss_pred cceEEE-----EEEEcCCHHHHHHHHhCcchhhhhHHh-------hhheeeeeecC-----CCeEEEEEEecCCCCCCCC
Confidence 345664 4478899999999998875 56665 66677776432 33467787777666554 9
Q ss_pred cceeeEEeeeceecCCeEEEEEEeccC-ccCCCCCCCccceeecCCcceEeec---CCCccEEEEEEeeeecccccc
Q 003261 466 VREVNFLRFCKQHAEGVWAVVDVSIDT-IRETSGAPAFVNCRRLPSGCVVQDM---PNGYSKVTWVEHAEYDESQVH 538 (835)
Q Consensus 466 ~Re~~flRyckq~~~g~waVvDvSld~-~~~~~~~~~~~~~~r~PSGclIq~~---~nG~skVtwVeH~e~d~~~v~ 538 (835)
.|||..+|-....+++.. |.=.|++. ..+.. .+.++|.+.+++|++|+++ ++|.|+||.+-|+|---..+|
T Consensus 107 ~RDfV~l~~~~~~~~~~v-i~~~SV~~~~~P~~-~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP 181 (205)
T cd08874 107 PRDFCCLQVEAKEGELSV-VACQSVYDKSMPEP-GRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVP 181 (205)
T ss_pred CCeEEEEEEEEECCCcEE-EEEEecccccCCCC-CCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCC
Confidence 999999995555555544 66677765 22211 1148999999999999999 999999999999987533343
No 49
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=97.83 E-value=0.00027 Score=73.71 Aligned_cols=162 Identities=19% Similarity=0.246 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhhcCCCCceeecc-CCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcC-hhh
Q 003261 343 ALAAMDELVKMAQTDEPLWIRSF-EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD-PNR 420 (835)
Q Consensus 343 A~~Am~El~~la~~~eplWi~~~-~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD-~~~ 420 (835)
-+..+++|++.|..--=-|+.-. ..+ .|+- |. .+..|...-.-|....+.-.+.+|+..|+| +.+
T Consensus 11 ~~~~~~~l~~e~~~k~k~w~~~~~~~~-~el~----~~--------k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~ 77 (204)
T cd08908 11 LQDCVDGLFKEVKEKFKGWVSYSTSEQ-AELS----YK--------KVSEGPPLRLWRTTIEVPAAPEEILKRLLKEQHL 77 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCc-EEEE----Ee--------ccCCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHH
Confidence 34677777777764444555421 111 1110 11 123444555667777788888888865555 567
Q ss_pred hhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeec-eecCCeEEEEEEeccCccCCCCC
Q 003261 421 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK-QHAEGVWAVVDVSIDTIRETSGA 499 (835)
Q Consensus 421 W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyck-q~~~g~waVvDvSld~~~~~~~~ 499 (835)
|-.. +..++.++-|+. .-.+.|-.+..|-| +|.|||.++|-.+ +.++|..+|+-.|++.-. .|
T Consensus 78 Wd~~----~~e~~vIe~ld~--------~~~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~-~P-- 141 (204)
T cd08908 78 WDVD----LLDSKVIEILDS--------QTEIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHDR-AP-- 141 (204)
T ss_pred HHHH----hhheEeeEecCC--------CceEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCccc-CC--
Confidence 8776 234666666552 12578888899988 7999999997665 578999999999988542 11
Q ss_pred CCccceeecCCcceEeecCCCccEEEEEEeeeec
Q 003261 500 PAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYD 533 (835)
Q Consensus 500 ~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d 533 (835)
...+|.+.+-+|++|+++++|.|+||.+-|++--
T Consensus 142 ~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPg 175 (204)
T cd08908 142 VAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLR 175 (204)
T ss_pred cCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCC
Confidence 2368999999999999999999999999999753
No 50
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.81 E-value=9.6e-06 Score=85.39 Aligned_cols=59 Identities=27% Similarity=0.509 Sum_probs=53.1
Q ss_pred CCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 134 KKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 134 rr~Rtr~T~~Ql~~LE~~F---~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
||+|..|+..-.+.|..+| ..+|||+...+++||++++++..||-.||.|+|-+.||-.
T Consensus 189 rRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~~ 250 (334)
T KOG0774|consen 189 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKNM 250 (334)
T ss_pred HHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhhh
Confidence 5566689999999999999 4578999999999999999999999999999999988643
No 51
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.66 E-value=0.0003 Score=73.17 Aligned_cols=166 Identities=16% Similarity=0.185 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEE-EechhhHHHHhcChhhh
Q 003261 343 ALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMV-IINSLALVETLMDPNRW 421 (835)
Q Consensus 343 A~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V-~~~~~~LVe~lmD~~~W 421 (835)
-+..+++|++-+....=-|+...+....|+. .|.- +.|...--=|.+.-| ...+.-|-++|.|+..|
T Consensus 11 l~~~~~~~lre~~ek~kgW~~~~~~~~vev~-----~kk~-------~d~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~W 78 (205)
T cd08907 11 LEDNVQCLLREASERFKGWHSAPGPDNTELA-----CKKV-------GDGHPLRLWKVSTEVEAPPSVVLQRVLRERHLW 78 (205)
T ss_pred HHHHHHHHHHHhhhccCCceeecCCCCcEEE-----EEeC-------CCCCceEEEEEEEEecCCCHHHHHHHhhchhhh
Confidence 3478889999998777789874322102221 1110 111111111222222 23456678999999999
Q ss_pred hhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeec-eecCCeEEEEEEeccCccCCCCCC
Q 003261 422 AEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK-QHAEGVWAVVDVSIDTIRETSGAP 500 (835)
Q Consensus 422 ~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyck-q~~~g~waVvDvSld~~~~~~~~~ 500 (835)
=+. +-+.++|+.|..-. ++-|=-+..| +.+|.|||.+||.-+ .+..|.-+|+.+|++....-+ ..
T Consensus 79 D~~----m~e~~~Ie~Ld~n~--------dI~yY~~~~~-~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp-~~ 144 (205)
T cd08907 79 DED----LLHSQVIEALENNT--------EVYHYVTDSM-APHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQL-EA 144 (205)
T ss_pred hHH----HHhhhhheeecCCC--------EEEEEEecCC-CCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCC-CC
Confidence 987 34588988885211 2233223333 568999999999864 467788999999998654332 12
Q ss_pred CccceeecCCcceEeecCCCccEEEEEEeeeeccc
Q 003261 501 AFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDES 535 (835)
Q Consensus 501 ~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~ 535 (835)
-+|+--+=|||||++++.|.|+||-|-|++..-+
T Consensus 145 -gVRa~~l~sgYlIep~g~g~s~ltyi~rvD~rG~ 178 (205)
T cd08907 145 -GVRAVLLTSQYLIEPCGMGRSRLTHICRADLRGR 178 (205)
T ss_pred -CeEEEEEeccEEEEECCCCCeEEEEEEEeCCCCC
Confidence 3899999999999999999999999999987544
No 52
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.57 E-value=0.0024 Score=66.30 Aligned_cols=154 Identities=11% Similarity=0.086 Sum_probs=117.1
Q ss_pred eeeeeceeEE-EechhhHHHHhcChh---hhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceee
Q 003261 395 TEASRETGMV-IINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVN 470 (835)
Q Consensus 395 ~EAsR~~g~V-~~~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~ 470 (835)
.-.=|..+++ .+.+..|.+.|+|.+ +|-.. +...++|.... +-...++|-.+..|-|+ -.||+.
T Consensus 49 ~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~-------~~~~~~le~~~----~~~~~i~y~~~~~P~P~-s~RD~V 116 (209)
T cd08870 49 LYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDET-------VIEHETLEEDE----KSGTEIVRWVKKFPFPL-SDREYV 116 (209)
T ss_pred ceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhh-------eeeEEEEEecC----CCCcEEEEEEEECCCcC-CCceEE
Confidence 3457778878 569999999999965 56665 34444554311 10147899999999988 999999
Q ss_pred EEeeeceecCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeec--CCCccEEEEEEeeeeccccccccchhhhccc
Q 003261 471 FLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDM--PNGYSKVTWVEHAEYDESQVHQLYKPLIISG 548 (835)
Q Consensus 471 flRyckq~~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~--~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg 548 (835)
+.|-..+..+|..+|+=.|++.-. .|.. .++|.+..=||++|++. .+|.++|+++-|.+- .-.+|. -|++..
T Consensus 117 ~~r~~~~~~~~~~~i~~~sv~~~~-~P~~-~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~---wlvN~~ 190 (209)
T cd08870 117 IARRLWESDDRSYVCVTKGVPYPS-VPRS-GRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPR---ELAKLA 190 (209)
T ss_pred EEEEEEEcCCCEEEEEEeCCcCCC-CCCC-CcEEEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCH---HHHHHH
Confidence 999777777999988888877521 1211 47999999999999999 789999999999863 223554 468888
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 003261 549 MGFGAQRWVATLQRQCEC 566 (835)
Q Consensus 549 ~afGA~rWlatLqRqcer 566 (835)
...|+-.||..|.+.|..
T Consensus 191 ~~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 191 VKRGMPGFLKKLENALRK 208 (209)
T ss_pred HHhhhHHHHHHHHHHHhc
Confidence 999999999999988853
No 53
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.54 E-value=0.0029 Score=67.31 Aligned_cols=195 Identities=13% Similarity=0.178 Sum_probs=124.2
Q ss_pred HHHHHHHHHhhcC--CCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEE-echhhHHHHhcChhh
Q 003261 344 LAAMDELVKMAQT--DEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVETLMDPNR 420 (835)
Q Consensus 344 ~~Am~El~~la~~--~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~-~~~~~LVe~lmD~~~ 420 (835)
.+-.+|.+++|+. ++.-|--..+.+. .+.|.+.. ...|+....=|+.++|. ..+..+.+.|.|.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~W~l~~~~~g---------ikVy~r~~--~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~ 77 (235)
T cd08872 9 DEKVQEQLTYALEDVGADGWQLFAEEGE---------MKVYRREV--EEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDV 77 (235)
T ss_pred HHHHHHHHHHHHccCCCCCCEEEEeCCc---------eEEEEEEC--CCCCceeeeEEEEEEECCCCHHHHHHHHhChhh
Confidence 3566789999865 5557976543321 23333321 11244445678888888 889999999999874
Q ss_pred hhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecC-------CeEEEEEEeccCc
Q 003261 421 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE-------GVWAVVDVSIDTI 493 (835)
Q Consensus 421 W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~-------g~waVvDvSld~~ 493 (835)
..+=... +...+||..-. ....+.|..+-.|=| +..|||.|+|+-++.++ +.|+|+..|++.-
T Consensus 78 r~~Wd~~----~~~~~vie~l~-----~~~~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~ 147 (235)
T cd08872 78 RMDWETT----LENFHVVETLS-----QDTLIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHD 147 (235)
T ss_pred HHHHHhh----hheeEEEEecC-----CCCEEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecccCc
Confidence 4333222 34444554332 223567888888999 69999999999998876 7899999997743
Q ss_pred cCCCCCCCccceee---cCCcceEee------c--CCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHH
Q 003261 494 RETSGAPAFVNCRR---LPSGCVVQD------M--PNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQR 562 (835)
Q Consensus 494 ~~~~~~~~~~~~~r---~PSGclIq~------~--~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqR 562 (835)
. .|..+.++|++. +=.|.+|.+ + .||.|+||++-|++---+.-.- +++.....++-++|..|--
T Consensus 148 ~-~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~iP~w----vvn~~~k~~~P~~l~~~~~ 222 (235)
T cd08872 148 S-APLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGWAPAS----VLRAVYKREYPKFLKRFTS 222 (235)
T ss_pred c-CCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCCccHH----HHHHHHHhhchHHHHHHHH
Confidence 2 122224777765 223333332 1 5889999999999755443333 3555556667777777754
Q ss_pred HH
Q 003261 563 QC 564 (835)
Q Consensus 563 qc 564 (835)
++
T Consensus 223 ~~ 224 (235)
T cd08872 223 YV 224 (235)
T ss_pred HH
Confidence 43
No 54
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.52 E-value=1.6e-05 Score=62.16 Aligned_cols=34 Identities=32% Similarity=0.630 Sum_probs=29.0
Q ss_pred cCCCCCHHHHHHHHHhhcccceeEEeecchhhHH
Q 003261 154 ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 187 (835)
Q Consensus 154 ~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK 187 (835)
.+|||+..++++||+++||+.+||..||-|.|.|
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 4799999999999999999999999999999875
No 55
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.42 E-value=0.003 Score=65.75 Aligned_cols=152 Identities=11% Similarity=0.127 Sum_probs=111.5
Q ss_pred eeeceeEE-EechhhHHHHhcChh---hhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEE
Q 003261 397 ASRETGMV-IINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL 472 (835)
Q Consensus 397 AsR~~g~V-~~~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fl 472 (835)
.=|..+++ ...+..+++.|+|.+ +|-.. +...++|.-.. +-...++|..+..|-|+ -.||+.+.
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~-------~~~~~~le~~~----~~~~~i~y~~~~~P~P~-s~RD~V~~ 113 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQLDLEYRKKWDAT-------AVELEVVDEDP----ETGSEIIYWEMQWPKPF-ANRDYVYV 113 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhh-------heeEEEEEccC----CCCCEEEEEEEECCCCC-CCccEEEE
Confidence 46665644 789999999999986 56665 44456665421 11237899999999996 89999999
Q ss_pred eeeceec-CCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecC---CCccEEEEEEeeeeccc-cccccchhhhcc
Q 003261 473 RFCKQHA-EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP---NGYSKVTWVEHAEYDES-QVHQLYKPLIIS 547 (835)
Q Consensus 473 Ryckq~~-~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~---nG~skVtwVeH~e~d~~-~v~~lyrpl~~S 547 (835)
|-..+.+ +|.++|+-.|++.-. .|....++|.....+|++|++.. ++.|+|+++-|. |+. .+|.- |++.
T Consensus 114 r~~~~~~~~~~~~i~~~sv~hp~-~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~--dPgG~IP~~---lvN~ 187 (207)
T cd08911 114 RRYIIDEENKLIVIVSKAVQHPS-YPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD--NPGVNIPSY---ITSW 187 (207)
T ss_pred EEEEEcCCCCEEEEEEecCCCCC-CCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe--CCCCccCHH---HHHH
Confidence 8876665 567888888887421 12122589999999999999984 677999988885 655 36653 4666
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 003261 548 GMGFGAQRWVATLQRQCEC 566 (835)
Q Consensus 548 g~afGA~rWlatLqRqcer 566 (835)
-...++-.||..|++-|..
T Consensus 188 ~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 188 VAMSGMPDFLERLRNAALK 206 (207)
T ss_pred HHHhhccHHHHHHHHHHhc
Confidence 6777888999999888753
No 56
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.40 E-value=0.00011 Score=76.22 Aligned_cols=64 Identities=30% Similarity=0.610 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHH
Q 003261 130 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 193 (835)
Q Consensus 130 ~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 193 (835)
..+.++.|+.++..|+..++..|...++|+...+++|+..++++++.+++||||+|.+.|+...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 150 NKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred ccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 4556777888999999999999999999999999999999999999999999999999997654
No 57
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=97.35 E-value=0.0001 Score=85.00 Aligned_cols=60 Identities=28% Similarity=0.309 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHH
Q 003261 130 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 189 (835)
Q Consensus 130 ~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 189 (835)
..+.||.|..||..|...|.++|++++||+....+.|+.+|+|...-|..||-|-|.|.+
T Consensus 417 ~~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRsl 476 (558)
T KOG2252|consen 417 MLQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRSL 476 (558)
T ss_pred cccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhcc
Confidence 445678899999999999999999999999999999999999999999999999988863
No 58
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.12 E-value=0.0048 Score=65.78 Aligned_cols=119 Identities=13% Similarity=0.128 Sum_probs=85.1
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecC
Q 003261 401 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 480 (835)
Q Consensus 401 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~ 480 (835)
-++|...+.+|++.|.|.+...+=.+ .+...++|..-. ....++|..+..|. -+..|||.++|+-++..+
T Consensus 82 e~~vd~s~~~v~dlL~D~~~R~~WD~----~~~e~evI~~id-----~d~~iyy~~~p~Pw-Pvk~RDfV~~~s~~~~~~ 151 (235)
T cd08873 82 ELKVQTCASDAFDLLSDPFKRPEWDP----HGRSCEEVKRVG-----EDDGIYHTTMPSLT-SEKPNDFVLLVSRRKPAT 151 (235)
T ss_pred EEEecCCHHHHHHHHhCcchhhhhhh----cccEEEEEEEeC-----CCcEEEEEEcCCCC-CCCCceEEEEEEEEeccC
Confidence 34488899999999999875443322 255566665321 13356776655555 488999999999998443
Q ss_pred C--eEEEEEEecc-CccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeee
Q 003261 481 G--VWAVVDVSID-TIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAE 531 (835)
Q Consensus 481 g--~waVvDvSld-~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e 531 (835)
+ ..+|.=.|+. ... |..+.++|.+.+=.|++|++..+|.|+||.+-|++
T Consensus 152 ~~~~~~I~~~SV~h~~~--Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 152 DGDPYKVAFRSVTLPRV--PQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred CCCeEEEEEeeeecccC--CCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 3 3777766655 221 11225899999999999999999999999999986
No 59
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=97.11 E-value=0.026 Score=59.01 Aligned_cols=175 Identities=19% Similarity=0.285 Sum_probs=102.0
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 003261 610 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 688 (835)
Q Consensus 610 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~i 688 (835)
..++|... .. .++|+|.+|+..+ +.+...++...++ +||+.+|++|.|...|.+||..... .+.+.++
T Consensus 21 ~~~~W~~~-~~--~~gi~iy~r~~~~------~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e--~~~ie~~ 89 (222)
T cd08871 21 STDGWKLK-YN--KNNVKVWTKNPEN------SSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIE--SFDICQL 89 (222)
T ss_pred CCCCcEEE-Ec--CCCeEEEEeeCCC------CceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhce--eEEEEEc
Confidence 34689976 33 5679999988632 2344555666666 9999999999999999999974332 2334444
Q ss_pred ccCCCCCceEEEEEecccC-CCCCceEEEEccccCCCCcEEEEe-ecchhhhhhhhcCCCCCCc--cccCCccEEcCCCC
Q 003261 689 AKGQDHGNCVSLLRASAIN-ANQSSMLILQETCTDAAGSLVVYA-PVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDGP 764 (835)
Q Consensus 689 a~g~~~gn~vsllr~~~~~-~~~~~~liLQes~td~sgs~vVyA-PvD~~~m~~vm~G~D~~~v--~LLPSGF~I~Pdg~ 764 (835)
+.++.|.-...+..- -...+.++++..+.+. ++++|++ .|+-+.+ ...+.+| ..+.+||.|-|.+
T Consensus 90 ----d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~-----P~~~g~VR~~~~~~g~~i~p~~- 158 (222)
T cd08871 90 ----NPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKY-----PPRKGFVRAISLLTGYLIRPTG- 158 (222)
T ss_pred ----CCCCEEEEEEeECCCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCC-----CCCCCeEEeEEEccEEEEEECC-
Confidence 344555444444221 3456777777655445 7766543 3432221 0111222 3567777777733
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh-HhhhhhHHHHHHHHHhc
Q 003261 765 DSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 832 (835)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t-v~~li~~tv~~Ik~Al~ 832 (835)
.++|.+|.-+|+=.... +..--|.. +....-.++++++.|+.
T Consensus 159 ----------------------~~~t~vt~~~~~Dp~G~----IP~~lvN~~~~~~~~~~l~~l~k~~~ 201 (222)
T cd08871 159 ----------------------PKGCTLTYVTQNDPKGS----LPKWVVNKATTKLAPKVMKKLHKAAL 201 (222)
T ss_pred ----------------------CCCEEEEEEEecCCCCC----cCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 13588887776654422 22222222 23334467888887764
No 60
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=96.57 E-value=0.088 Score=54.44 Aligned_cols=174 Identities=17% Similarity=0.230 Sum_probs=103.4
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecc
Q 003261 610 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIA 689 (835)
Q Consensus 610 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~ia 689 (835)
..++|... . ..++|+|.+|+..+ +.| +..-+...-++.+|+.||+.|.| .|.+||...- ..+.+-.|
T Consensus 17 ~~~~W~~~-~--~~~gi~I~~k~~~~--~~~---l~~~K~~~~v~a~~~~v~~~l~d--~r~~Wd~~~~--~~~vie~i- 83 (197)
T cd08869 17 KSKGWVSV-S--SSDHVELAFKKVDD--GHP---LRLWRASTEVEAPPEEVLQRILR--ERHLWDDDLL--QWKVVETL- 83 (197)
T ss_pred ccCCceEE-e--cCCcEEEEEEeCCC--CCc---EEEEEEEEEeCCCHHHHHHHHHH--HHhccchhhh--eEEEEEEe-
Confidence 46899965 3 35799999999732 222 44557888889999999999988 6899996332 12333333
Q ss_pred cCCCCCceEEEEEecccCC-CCCceEEEEccccC-CCCcEEEEe-ecchh-hhhhhhcCCCCCC--ccccCCccEEcCCC
Q 003261 690 KGQDHGNCVSLLRASAINA-NQSSMLILQETCTD-AAGSLVVYA-PVDIP-AMHVVMNGGDSAY--VALLPSGFAIVPDG 763 (835)
Q Consensus 690 ~g~~~gn~vsllr~~~~~~-~~~~~liLQes~td-~sgs~vVyA-PvD~~-~m~~vm~G~D~~~--v~LLPSGF~I~Pdg 763 (835)
+..+.|--...+..-+ ...++.+++-...| ..|+++|.. -|+-+ .+ -+.+ +..+++||.|-|.+
T Consensus 84 ---d~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~-------p~g~VR~~~~~~g~~i~p~~ 153 (197)
T cd08869 84 ---DEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPV-------PLGGVRAVVLASRYLIEPCG 153 (197)
T ss_pred ---cCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCC-------CCCCEEEEEEeeeEEEEECC
Confidence 2334433333332222 33466666533333 455665433 23221 11 0122 35788999998843
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHhHhhhhhHHHHHHHHHhcc
Q 003261 764 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQC 833 (835)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~tv~~li~~tv~~Ik~Al~~ 833 (835)
. ++|.+|--.|+=.. ..+..=-+-..+++++..|++|++.+.|
T Consensus 154 ~-----------------------~~t~vty~~~~Dp~----G~iP~wl~N~~~~~~~~~~~~l~~~~~~ 196 (197)
T cd08869 154 S-----------------------GKSRVTHICRVDLR----GRSPEWYNKVYGHLCARELLRIRDSFRQ 196 (197)
T ss_pred C-----------------------CCeEEEEEEEECCC----CCCCceeecchHhHHHHHHHHHHhhccC
Confidence 2 35777766555433 3333223445678999999999998876
No 61
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=96.53 E-value=0.17 Score=53.02 Aligned_cols=174 Identities=19% Similarity=0.281 Sum_probs=106.8
Q ss_pred CCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhccccchhhhh-hcCCCCcceee
Q 003261 609 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDI-LSNGGPMQEMA 686 (835)
Q Consensus 609 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~-ls~G~~vqe~~ 686 (835)
....+|... ...++|.|.++|..+ |.|.-++.| |+=++ +|.+.|+|.|+| |..||. |.... .|.
T Consensus 24 ek~kgW~~~---~~~~~vev~~kk~~d--~~~l~lwk~---s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~---~Ie 89 (205)
T cd08907 24 ERFKGWHSA---PGPDNTELACKKVGD--GHPLRLWKV---STEVEAPPSVVLQRVLRE---RHLWDEDLLHSQ---VIE 89 (205)
T ss_pred hccCCceee---cCCCCcEEEEEeCCC--CCceEEEEE---EEEecCCCHHHHHHHhhc---hhhhhHHHHhhh---hhe
Confidence 455689866 236789999999754 566555544 45568 999999999999 999996 33322 222
Q ss_pred ecccCCCCCceEEEEEecccCCCCCceEEEEccc-cC-CCCcEEEEee-cchhhhhhhhcCCCCCCccccCCccEEcCCC
Q 003261 687 HIAKGQDHGNCVSLLRASAINANQSSMLILQETC-TD-AAGSLVVYAP-VDIPAMHVVMNGGDSAYVALLPSGFAIVPDG 763 (835)
Q Consensus 687 ~ia~g~~~gn~vsllr~~~~~~~~~~~liLQes~-td-~sgs~vVyAP-vD~~~m~~vm~G~D~~~v~LLPSGF~I~Pdg 763 (835)
.| +..|.|-=.-.+...+-.+--|++|-++ +| ..|++++.+- |+=+... ..|| --...|=+||-|=|.|
T Consensus 90 ~L----d~n~dI~yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~p--p~~g--VRa~~l~sgYlIep~g 161 (205)
T cd08907 90 AL----ENNTEVYHYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQ--LEAG--VRAVLLTSQYLIEPCG 161 (205)
T ss_pred ee----cCCCEEEEEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCC--CCCC--eEEEEEeccEEEEECC
Confidence 23 4444454444444444555667777777 34 5677666542 2222111 1222 1223455777776643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHhH-hhhhhHHHHHHHHHhc
Q 003261 764 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETV-NNLISCTVQKIKAALQ 832 (835)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~tv-~~li~~tv~~Ik~Al~ 832 (835)
. |+|-||==.|+=.... .++=+..| ..|++.-+.||+..+.
T Consensus 162 ~-----------------------g~s~ltyi~rvD~rG~-----~P~Wynk~~g~~~a~~l~~ir~sF~ 203 (205)
T cd08907 162 M-----------------------GRSRLTHICRADLRGR-----SPDWYNKVFGHLCAMEVARIRDSFP 203 (205)
T ss_pred C-----------------------CCeEEEEEEEeCCCCC-----CcHHHHHhHHHHHHHHHHHHHhhcc
Confidence 2 5788887767666555 44555555 5667778889988764
No 62
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.50 E-value=0.034 Score=59.63 Aligned_cols=129 Identities=12% Similarity=0.116 Sum_probs=84.0
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeeccc-ccccccceeeEEeeece
Q 003261 399 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL-SPLVPVREVNFLRFCKQ 477 (835)
Q Consensus 399 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~-SPLvp~Re~~flRyckq 477 (835)
|.-++|...+.+|.+.|.|.+...+=.+. +...+||..... + . . +|-..-.+ ..-|..|||..++...+
T Consensus 84 K~e~~vd~s~e~v~~lL~D~~~r~~Wd~~----~~e~~vIe~id~---~-~-~-vY~v~~~p~~~pvs~RDfV~~~s~~~ 153 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSDLRRRPEWDKH----YRSCELVQQVDE---D-D-A-IYHVTSPSLSGHGKPQDFVILASRRK 153 (240)
T ss_pred EEEEEEcCCHHHHHHHHhChhhhhhhHhh----ccEEEEEEecCC---C-c-E-EEEEecCCCCCCCCCCeEEEEEEEEe
Confidence 33468899999999999998755444333 444555543322 1 1 1 23322111 12588999999988866
Q ss_pred ec-CC-eEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeecccccccc
Q 003261 478 HA-EG-VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQL 540 (835)
Q Consensus 478 ~~-~g-~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l 540 (835)
.+ +| .++|+=.|+..-. -|..+.++|.+.+..|++|++..+|.|+||++-|++ +..+|..
T Consensus 154 ~~~~g~~yii~~~sv~~P~-~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d--PG~LP~~ 215 (240)
T cd08913 154 PCDNGDPYVIALRSVTLPT-HPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT--PGVLPYI 215 (240)
T ss_pred ccCCCccEEEEEEEeecCC-CCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC--CccccHH
Confidence 54 34 4555555544221 222235899999999999999999999999999988 2345443
No 63
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.44 E-value=0.027 Score=60.22 Aligned_cols=129 Identities=12% Similarity=0.074 Sum_probs=89.6
Q ss_pred eeeceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccc-cccccceeeEEeee
Q 003261 397 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLS-PLVPVREVNFLRFC 475 (835)
Q Consensus 397 AsR~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~S-PLvp~Re~~flRyc 475 (835)
+-|.-..|...+.+|++.|.|.+...+=.+- +...+||..-...+ . +|...-.|- |+ ..|||.++|--
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~----~~e~~vI~qld~~~-----~-vY~~~~pPw~Pv-k~RD~V~~~s~ 147 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFTKRPLWDPH----FLSCEVIDWVSEDD-----Q-IYHITCPIVNND-KPKDLVVLVSR 147 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhchhHHh----hceEEEEEEeCCCc-----C-EEEEecCCCCCC-CCceEEEEEEE
Confidence 4444457889999999999998754443332 45555554322211 1 466554443 44 89999998777
Q ss_pred ceec-CCe-EEEEEEeccC-ccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeecccccccc
Q 003261 476 KQHA-EGV-WAVVDVSIDT-IRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQL 540 (835)
Q Consensus 476 kq~~-~g~-waVvDvSld~-~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l 540 (835)
.+.. +|. ++|.=.|+.. ..+ ..+.++|.+.+=+|++|++.++|.|+||.+-|++ +..+|..
T Consensus 148 ~~~~~dg~~~~I~~~SVp~~~~P--p~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~d--Pg~lp~~ 211 (236)
T cd08914 148 RKPLKDGNTYVVAVKSVILPSVP--PSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQIS--ASILPYF 211 (236)
T ss_pred EecCCCCCEEEEEEeecccccCC--CCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcC--Cccchhe
Confidence 6665 885 8888888765 322 1225899999999999999999999999999995 4555544
No 64
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=96.36 E-value=0.0035 Score=78.61 Aligned_cols=61 Identities=20% Similarity=0.352 Sum_probs=57.4
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHH
Q 003261 133 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 193 (835)
Q Consensus 133 krr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 193 (835)
+|+.|++++..|+..+..+|....||...+.+.|...++++++.|++||||-|.|.|+...
T Consensus 903 r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 903 RRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKL 963 (1406)
T ss_pred hhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhh
Confidence 5677899999999999999999999999999999999999999999999999999997665
No 65
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=96.12 E-value=0.27 Score=51.60 Aligned_cols=174 Identities=18% Similarity=0.259 Sum_probs=107.3
Q ss_pred CCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeeccc
Q 003261 611 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAK 690 (835)
Q Consensus 611 ~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~ia~ 690 (835)
.++|... . ..+++.|.++++.+..|. -.++.--+|.+|+.||+||.|..+|.+||-.... .+.+-+|
T Consensus 21 ~~gWk~~-k--~~~~~~v~~k~~~~~~gk------l~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~--~~iie~I-- 87 (204)
T cd08904 21 TSGWKVV-K--TSKKITVSWKPSRKYHGN------LYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQV--YKMLQRI-- 87 (204)
T ss_pred ccCCeEE-e--cCCceEEEEEEcCCCCce------EEEEEEEecCCHHHHHHHHhccchhhhhcccccc--eeeEEEe--
Confidence 4899977 3 348899999988655542 3456677899999999999999999999974332 3344444
Q ss_pred CCCCCceEEEEEeccc--C-CCCCceEEEEcccc-CCCCcEEE-EeecchhhhhhhhcCCCCCCc--cccCCccEEcCCC
Q 003261 691 GQDHGNCVSLLRASAI--N-ANQSSMLILQETCT-DAAGSLVV-YAPVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDG 763 (835)
Q Consensus 691 g~~~gn~vsllr~~~~--~-~~~~~~liLQes~t-d~sgs~vV-yAPvD~~~m~~vm~G~D~~~v--~LLPSGF~I~Pdg 763 (835)
+...+|...+..+. + -+..+.+.+|-..- +- +.+++ +.-|+-+.+ ..-+.+| -..|+||.|.|..
T Consensus 88 --d~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~-~~~ii~~~sv~Hp~~-----Pp~~g~VRa~n~~~G~~i~pl~ 159 (204)
T cd08904 88 --DSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEG-NMNIVSSVSVEYPQC-----PPSSNYIRGYNHPCGYVCSPLP 159 (204)
T ss_pred --CCCcEEEEEecccccCCcccCceEEEEEEEEEeCC-CEEEEEEEecccCCC-----CCCCCcEEEeeeccEEEEEECC
Confidence 66667777665421 1 23467777764222 33 33333 444554443 1123444 3789999999933
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh--HhhhhhHHHHHHHHHh
Q 003261 764 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET--VNNLISCTVQKIKAAL 831 (835)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t--v~~li~~tv~~Ik~Al 831 (835)
.. .++|.||.-+|+=.. -.|..--|.. -.+++ ..+...|.||
T Consensus 160 ~~---------------------p~~t~l~~~~~~Dlk----G~lP~~vv~~~~~~~~~-~f~~~~~~~~ 203 (204)
T cd08904 160 EN---------------------PAYSKLVMFVQPELR----GNLSRSVIEKTMPTNLV-NLILDAKDGI 203 (204)
T ss_pred CC---------------------CCceEEEEEEEeCCC----CCCCHHHHHHHhHHHHH-HHHHHHHHhc
Confidence 21 146899998885433 3344434433 23333 3667777776
No 66
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=95.43 E-value=0.19 Score=52.66 Aligned_cols=133 Identities=19% Similarity=0.230 Sum_probs=73.0
Q ss_pred CCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 003261 609 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 688 (835)
Q Consensus 609 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~i 688 (835)
-...+|..- . ..++|+|.++.. +|...| +++ .+ -+++||+.|+++|+|...|.+||...... +|
T Consensus 19 ~~~~gW~l~-~--~~~gI~Vy~k~~---~~~~~~-~~g-e~--~v~as~~~v~~ll~D~~~r~~Wd~~~~~~------~v 82 (205)
T cd08874 19 QATAGWSYQ-C--LEKDVVIYYKVF---NGTYHG-FLG-AG--VIKAPLATVWKAVKDPRTRFLYDTMIKTA------RI 82 (205)
T ss_pred hccCCcEEE-e--cCCCEEEEEecC---CCCcce-EEE-EE--EEcCCHHHHHHHHhCcchhhhhHHhhhhe------ee
Confidence 456799533 2 368999999864 234444 443 33 34999999999999999999999854321 22
Q ss_pred ccCCCCCceEEEEEecccC---C--CCCceEEEEccccCCCCcEEE-EeecchhhhhhhhcCCCCCCccccCCccEEcCC
Q 003261 689 AKGQDHGNCVSLLRASAIN---A--NQSSMLILQETCTDAAGSLVV-YAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPD 762 (835)
Q Consensus 689 a~g~~~gn~vsllr~~~~~---~--~~~~~liLQes~td~sgs~vV-yAPvD~~~m~~vm~G~D~~~v~LLPSGF~I~Pd 762 (835)
.+-.+.. ..|++..... . ..+++.+|+ ++.+.-+.++| ---|+-+.+-. .+.+==-+..+++||.|.|.
T Consensus 83 l~~~~~d--~~i~y~~~~~Pwp~~~~~RDfV~l~-~~~~~~~~~vi~~~SV~~~~~P~--~~~~~VR~~~~~~gw~i~P~ 157 (205)
T cd08874 83 HKTFTED--ICLVYLVHETPLCLLKQPRDFCCLQ-VEAKEGELSVVACQSVYDKSMPE--PGRSLVRGEILPSAWILEPV 157 (205)
T ss_pred eeecCCC--eEEEEEEecCCCCCCCCCCeEEEEE-EEEECCCcEEEEEEecccccCCC--CCCCeEEeeeEeeeEEEEEC
Confidence 2222332 3455543111 1 456787777 45444343333 21122211100 00000124578888888883
No 67
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=95.07 E-value=0.015 Score=64.90 Aligned_cols=62 Identities=21% Similarity=0.336 Sum_probs=51.2
Q ss_pred CCCCCCCCCHHHHHHHHHhhh---cCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHH
Q 003261 133 RKKRYHRHTPQQIQELESLFK---ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 194 (835)
Q Consensus 133 krr~Rtr~T~~Ql~~LE~~F~---~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 194 (835)
++|++..+.......|+.+.. ..+||+..++..|++++||+..||..||-|.|-|..+-...
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~p~~~ 303 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWKPMIE 303 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCCchHH
Confidence 445556789999999998743 35799999999999999999999999999999886654443
No 68
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=94.91 E-value=1.8 Score=43.89 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=45.9
Q ss_pred CCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhh
Q 003261 609 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 676 (835)
Q Consensus 609 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~l 676 (835)
|.+-+|... . ..++|+|.+++..+ +.+..-.++..++.||+.+|+++.|..+|.+||--
T Consensus 14 ~~~~~W~~~-~--~~~~v~v~~~~~~~------~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~ 72 (195)
T cd08876 14 APDGDWQLV-K--DKDGIKVYTRDVEG------SPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPN 72 (195)
T ss_pred CCCCCCEEE-e--cCCCeEEEEEECCC------CCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhh
Confidence 445559977 3 35799999988632 12445577778999999999999999999999973
No 69
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=94.73 E-value=1.6 Score=45.56 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=80.2
Q ss_pred HHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhc
Q 003261 598 MTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILS 677 (835)
Q Consensus 598 M~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls 677 (835)
++..|...+.. .++|... . ..++|+|.+|...+ +.+++.+.-..++.|+..++++|+|-..+.+|+-.+
T Consensus 10 ~~~~~~~~l~~--~~~W~~~-~--~~~~i~v~~r~~~~------~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~ 78 (215)
T cd08877 10 IMQENLKDLDE--SDGWTLQ-K--ESEGIRVYYKFEPD------GSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFC 78 (215)
T ss_pred HHHHHHhcccC--CCCcEEe-c--cCCCeEEEEEeCCC------CCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccc
Confidence 34556666655 6789977 3 35799999999732 348899999999999999999999999999999753
Q ss_pred CCCCcceeeecccCCCCCceEEEEEecccC-CCCCceEEEEcccc--CCCCcEEEEe
Q 003261 678 NGGPMQEMAHIAKGQDHGNCVSLLRASAIN-ANQSSMLILQETCT--DAAGSLVVYA 731 (835)
Q Consensus 678 ~G~~vqe~~~ia~g~~~gn~vsllr~~~~~-~~~~~~liLQes~t--d~sgs~vVyA 731 (835)
. ..+.+..+ +..+.|..+++...= -+..++++....|. |..|+++|+.
T Consensus 79 ~--~~~~l~~~----~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~ 129 (215)
T cd08877 79 I--RSKKVKQL----GRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEENGQIVILL 129 (215)
T ss_pred e--eeEEEeec----CCceEEEEEEEeCceEecceEEEEEEEEEeeeccCCCEEEEE
Confidence 2 12233333 445678888765321 23456666544343 3677777665
No 70
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=94.51 E-value=1.9 Score=42.67 Aligned_cols=147 Identities=20% Similarity=0.296 Sum_probs=90.0
Q ss_pred CCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecccC
Q 003261 612 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKG 691 (835)
Q Consensus 612 ~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~ia~g 691 (835)
++|..+ .. .++|+|..++..+ . .+...++..-++.|+..|+++|.|...|.+||...... ..+..+.
T Consensus 15 ~~W~~~-~~--~~~v~vy~~~~~~-~-----~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~--~vl~~~~-- 81 (193)
T cd00177 15 EGWKLV-KE--KDGVKIYTKPYED-S-----GLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEF--EVIEEID-- 81 (193)
T ss_pred CCeEEE-EE--CCcEEEEEecCCC-C-----CceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEE--EEEEEeC--
Confidence 589988 32 4589998887633 1 23456667778999999999999999999999633222 2233332
Q ss_pred CCCCceEEEEEecccC-CCCCceEEEEccccCCCC-cEEEEeecchhhhhhhhcCCCCCCc--cccCCccEEcCCCCCCC
Q 003261 692 QDHGNCVSLLRASAIN-ANQSSMLILQETCTDAAG-SLVVYAPVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDGPDSR 767 (835)
Q Consensus 692 ~~~gn~vsllr~~~~~-~~~~~~liLQes~td~sg-s~vVyAPvD~~~m~~vm~G~D~~~v--~LLPSGF~I~Pdg~~~~ 767 (835)
.+..|.-......- ....+++++.....+..+ -+++...||.+.. ..-+.+| .++++||.|-|.+
T Consensus 82 --~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~-----p~~~~~vR~~~~~~~~~i~~~~---- 150 (193)
T cd00177 82 --EHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSH-----PKEKGYVRAEIKLSGWIIEPLD---- 150 (193)
T ss_pred --CCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCC-----CCCCCcEEEEEEccEEEEEECC----
Confidence 22344444443322 345678888765445534 5666677776521 1112333 3668888888741
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeeEEEeeeeccc
Q 003261 768 GPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVN 801 (835)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~ 801 (835)
.++|.+|.-+|+=..
T Consensus 151 -------------------~~~~~vt~~~~~D~~ 165 (193)
T cd00177 151 -------------------PGKTKVTYVLQVDPK 165 (193)
T ss_pred -------------------CCCEEEEEEEeeCCC
Confidence 146888887777544
No 71
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=94.30 E-value=2.3 Score=44.16 Aligned_cols=132 Identities=18% Similarity=0.174 Sum_probs=74.8
Q ss_pred CCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhh-hccccchhhhhhcCCCCcceeeecc
Q 003261 611 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL-RDERLRSEWDILSNGGPMQEMAHIA 689 (835)
Q Consensus 611 ~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FL-rde~~R~eWd~ls~G~~vqe~~~ia 689 (835)
..+|... .. ..++|.|.+|+. +| .|-+ .++...+++||..||++| .|...|.+||..+.. .+.+-.+
T Consensus 23 ~~~W~l~-~~-~~~~i~i~~r~~---~~--~~~~--~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~--~~~i~~~- 90 (208)
T cd08868 23 DPGWKLE-KN-TTWGDVVYSRNV---PG--VGKV--FRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLE--CKIIQVI- 90 (208)
T ss_pred CCCceEE-Ee-cCCCCEEEEEEc---CC--CceE--EEEEEEEcCCHHHHHHHHHcCccccceecCcccc--eEEEEEe-
Confidence 4489976 32 223899999986 33 2333 455557799999999865 588999999975432 3344444
Q ss_pred cCCCCCceEEEEEeccc--C-CCCCceEEEEccccCCCCcEEE-EeecchhhhhhhhcCCCCCC--ccccCCccEEcCCC
Q 003261 690 KGQDHGNCVSLLRASAI--N-ANQSSMLILQETCTDAAGSLVV-YAPVDIPAMHVVMNGGDSAY--VALLPSGFAIVPDG 763 (835)
Q Consensus 690 ~g~~~gn~vsllr~~~~--~-~~~~~~liLQes~td~sgs~vV-yAPvD~~~m~~vm~G~D~~~--v~LLPSGF~I~Pdg 763 (835)
+....|--...... . -+.++.+.++- +....+.++| ...|+-+.+ ...+.+ +..+++||.|-|.+
T Consensus 91 ---d~~~~i~y~~~~~~~~~~vs~RDfV~~r~-~~~~~~~~~i~~~sv~h~~~-----P~~~g~VR~~~~~~~~~i~p~~ 161 (208)
T cd08868 91 ---DDNTDISYQVAAEAGGGLVSPRDFVSLRH-WGIRENCYLSSGVSVEHPAM-----PPTKNYVRGENGPGCWILRPLP 161 (208)
T ss_pred ---cCCcEEEEEEecCcCCCcccccceEEEEE-EEecCCeEEEEEEeccCCCC-----CCCCCeEEEeccccEEEEEECC
Confidence 23334433222211 1 23456666665 3332255544 333443321 112333 45788999998854
No 72
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=94.27 E-value=1.7 Score=45.35 Aligned_cols=107 Identities=16% Similarity=0.262 Sum_probs=63.5
Q ss_pred CCCceeccCCCCCCc----eEEEEecCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhccccchhhhhhcCCCCccee
Q 003261 611 VHKWNKLNAGNVDED----VRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEM 685 (835)
Q Consensus 611 ~~~W~~l~~~~~~~d----Vrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~ls~G~~vqe~ 685 (835)
+++|... .. .++ |+|-.|+.. |. | +.--++...++ +||+.|+++|.|...|.+||... .|.
T Consensus 21 ~~~W~~~-~~--k~~~~~~i~vy~r~~~---~s--~-~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~-----~~~ 86 (209)
T cd08870 21 GQAWQQV-MD--KSTPDMSYQAWRRKPK---GT--G-LYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETV-----IEH 86 (209)
T ss_pred CCcceEh-hh--ccCCCceEEEEecccC---CC--C-ceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhhe-----eeE
Confidence 3689987 43 344 888777652 22 2 33456677786 89999999999999999999743 333
Q ss_pred eecccCCCCCceEEEEEeccc-CCCCCceEEEEccccCCCCcEEEEe
Q 003261 686 AHIAKGQDHGNCVSLLRASAI-NANQSSMLILQETCTDAAGSLVVYA 731 (835)
Q Consensus 686 ~~ia~g~~~gn~vsllr~~~~-~~~~~~~liLQes~td~sgs~vVyA 731 (835)
--|.+..+.++.|-=...... --+..+..+....+.|.-+.++|..
T Consensus 87 ~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~ 133 (209)
T cd08870 87 ETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVT 133 (209)
T ss_pred EEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEE
Confidence 333332222444333333221 1234566665555566566666554
No 73
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=94.23 E-value=4.9 Score=41.59 Aligned_cols=145 Identities=17% Similarity=0.223 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhc--ccc
Q 003261 592 LKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRD--ERL 669 (835)
Q Consensus 592 lkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd--e~~ 669 (835)
=++.|.|..-|.. .++|... . ..++|+|.+++..+.. + -..++..-+|.+|+.||++|.| +..
T Consensus 8 ~~~~~~~~~~~~~------~~~W~~~-~--~~~~i~v~~~~~~~~~----~--~~~k~~~~i~~~~~~v~~~l~d~~~~~ 72 (206)
T cd08867 8 EKLANEALQYIND------TDGWKVL-K--TVKNITVSWKPSTEFT----G--HLYRAEGIVDALPEKVIDVIIPPCGGL 72 (206)
T ss_pred HHHHHHHHHHhcC------cCCcEEE-E--cCCCcEEEEecCCCCC----C--EEEEEEEEEcCCHHHHHHHHHhcCccc
Confidence 3455556555542 2789977 3 3478999998643211 2 2246677779999999999999 899
Q ss_pred chhhhhhcCCCCcceeeecccCCCCCceEEEEEeccc--C-CCCCceEEEEccccCCCCcEEEE-eecchhhhhhhhcCC
Q 003261 670 RSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI--N-ANQSSMLILQETCTDAAGSLVVY-APVDIPAMHVVMNGG 745 (835)
Q Consensus 670 R~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~--~-~~~~~~liLQes~td~sgs~vVy-APvD~~~m~~vm~G~ 745 (835)
|.+||.... ..+.+.+| ++.+.|-.+..... . -...+...+|-......|++++. .-|+-+.+ ..
T Consensus 73 r~~Wd~~~~--~~~~le~i----d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~-----p~ 141 (206)
T cd08867 73 RLKWDKSLK--HYEVLEKI----SEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPER-----PP 141 (206)
T ss_pred ccccccccc--ceEEEEEe----CCCeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCC-----CC
Confidence 999995432 34555555 33444433322111 1 23456777764222233555444 33333321 11
Q ss_pred CCCCc--cccCCccEEcCC
Q 003261 746 DSAYV--ALLPSGFAIVPD 762 (835)
Q Consensus 746 D~~~v--~LLPSGF~I~Pd 762 (835)
-+.+| ..+++||.|-|.
T Consensus 142 ~~~~VR~~~~~~g~~i~p~ 160 (206)
T cd08867 142 TPGFVRGYNHPCGYFCSPL 160 (206)
T ss_pred CCCcEEEEeecCEEEEEEC
Confidence 23333 467888888874
No 74
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=94.07 E-value=3.7 Score=43.08 Aligned_cols=130 Identities=13% Similarity=0.151 Sum_probs=77.7
Q ss_pred CCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHH-hhhccccchhhhhhcCCCCcceeeecc
Q 003261 611 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFN-FLRDERLRSEWDILSNGGPMQEMAHIA 689 (835)
Q Consensus 611 ~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~-FLrde~~R~eWd~ls~G~~vqe~~~ia 689 (835)
..+|..- .. ..++|+|-+++.. +. | .+-+.-+-+++||+.||+ .|.|...|.+||.-. ..++.+..|
T Consensus 24 ~~~W~l~-~~-~~~gi~V~s~~~~---~~--~--~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~--~~~~vi~~~- 91 (209)
T cd08906 24 EENWKFE-KN-NDNGDTVYTLEVP---FH--G--KTFILKAFMQCPAELVYQEVILQPEKMVLWNKTV--SACQVLQRV- 91 (209)
T ss_pred ccCCEEE-Ee-cCCCCEEEEeccC---CC--C--cEEEEEEEEcCCHHHHHHHHHhChhhccccCccc--hhhhheeec-
Confidence 3589854 22 2478999997652 22 2 334777778999999985 789999999999632 123344444
Q ss_pred cCCCCCceEEEEEeccc---C-CCCCceEEEEccccCCCCcEEEEeecchhhhhhhhcCCCCCCc--cccCCccEEcC
Q 003261 690 KGQDHGNCVSLLRASAI---N-ANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYV--ALLPSGFAIVP 761 (835)
Q Consensus 690 ~g~~~gn~vsllr~~~~---~-~~~~~~liLQes~td~sgs~vVyAPvD~~~m~~vm~G~D~~~v--~LLPSGF~I~P 761 (835)
++.+.|. ..+... + -+..++.+++-.+-+..+..++...|+.+.+ ...+.+| ...++||.|.|
T Consensus 92 ---~~~~~i~-Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~~i~~~~sv~~~~~-----P~~~~~VR~~~~~~G~~i~~ 160 (209)
T cd08906 92 ---DDNTLVS-YDVAAGAAGGVVSPRDFVNVRRIERRRDRYVSAGISTTHSHK-----PPLSKYVRGENGPGGFVVLK 160 (209)
T ss_pred ---cCCcEEE-EEEccccccCCCCCCceEEEEEEEecCCcEEEEEEEEecCCC-----CCCCCeEEEeeeccEEEEEE
Confidence 2333433 232221 1 2456788876544455554445555554432 2234444 35899999998
No 75
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=94.02 E-value=2.9 Score=42.64 Aligned_cols=135 Identities=20% Similarity=0.232 Sum_probs=80.8
Q ss_pred CCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhH-HHHhhhccccchhhhhhcCCCCcceeeecc
Q 003261 611 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQR-LFNFLRDERLRSEWDILSNGGPMQEMAHIA 689 (835)
Q Consensus 611 ~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~-vf~FLrde~~R~eWd~ls~G~~vqe~~~ia 689 (835)
.++|... .+ +.+++.+..|...+ +. .+-..+....++.+++. +.++|.|...|.+||..... ++.+-.+.
T Consensus 18 ~~~W~~~-~~-~~~~~~~~~~~~~~--~~---~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~--~~~ie~~~ 88 (206)
T smart00234 18 EPGWVLS-SE-NENGDEVRSILSPG--RS---PGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAK--AETLEVID 88 (206)
T ss_pred CCccEEc-cc-cCCcceEEEEccCC--CC---ceEEEEEEEEEecChHHHHHHHHhcccchhhCchhccc--EEEEEEEC
Confidence 4679977 43 23444444554311 11 36688889999988875 66899999999999975432 33344442
Q ss_pred cCCCCCceEEEEEeccc--CCCCCceEEEEccccCCCCcEEEEe-ecchhhhhhhhcCCCCCCc--cccCCccEEcCCC
Q 003261 690 KGQDHGNCVSLLRASAI--NANQSSMLILQETCTDAAGSLVVYA-PVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDG 763 (835)
Q Consensus 690 ~g~~~gn~vsllr~~~~--~~~~~~~liLQes~td~sgs~vVyA-PvD~~~m~~vm~G~D~~~v--~LLPSGF~I~Pdg 763 (835)
.++.|-....+.. --...+.+++.....+..++++|.. -++-+.. ...+.+| .++++||.|-|.+
T Consensus 89 ----~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-----p~~~~~VR~~~~~~~~~i~p~~ 158 (206)
T smart00234 89 ----NGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-----PPTSGYVRAENLPSGLLIEPLG 158 (206)
T ss_pred ----CCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-----CCCCCceEEEEeceEEEEEECC
Confidence 2344444333221 1234677777765556777766654 5554432 1123334 5899999999943
No 76
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=93.81 E-value=2.3 Score=44.79 Aligned_cols=172 Identities=20% Similarity=0.299 Sum_probs=98.7
Q ss_pred CceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecccCC
Q 003261 613 KWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQ 692 (835)
Q Consensus 613 ~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~ia~g~ 692 (835)
+|..+ ...+.+.+..+|. .+|.| +.--+.++=+|.+|..|...|-|+ |.+||...- .++.+..|
T Consensus 28 ~w~~~---~~~~~~el~~~k~--~~gs~---l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~--e~~vIe~l---- 91 (204)
T cd08908 28 GWVSY---STSEQAELSYKKV--SEGPP---LRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLL--DSKVIEIL---- 91 (204)
T ss_pred CCccc---CCCCcEEEEEecc--CCCCC---cEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhh--heEeeEec----
Confidence 78777 2357799999986 35555 567778888898888888777775 999997321 12333333
Q ss_pred CCCceEEEEEecccCC-CCCceEEEEccccC-CCCcEEEEee-cchhhhhhhhcCCCCCCccccCCccEEcCCCCCCCCC
Q 003261 693 DHGNCVSLLRASAINA-NQSSMLILQETCTD-AAGSLVVYAP-VDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGP 769 (835)
Q Consensus 693 ~~gn~vsllr~~~~~~-~~~~~liLQes~td-~sgs~vVyAP-vD~~~m~~vm~G~D~~~v~LLPSGF~I~Pdg~~~~~~ 769 (835)
++.+.|-=..++..-+ ...++.+++-..+| .-|++++... |+-+.+- .++ =-+..+-+|+.|-|.|
T Consensus 92 d~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P--~~~---VR~~~~~~~w~i~P~g------ 160 (204)
T cd08908 92 DSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAP--VAG---VRVNVLLSRYLIEPCG------ 160 (204)
T ss_pred CCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCC--cCc---eEEEEEeeEEEEEECC------
Confidence 3333333333333222 23456666443333 4677777665 4433211 000 0122233444444421
Q ss_pred CCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHhHhhhhhHHHHHHHHHhc
Q 003261 770 LANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQ 832 (835)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~tv~~li~~tv~~Ik~Al~ 832 (835)
.|+|-||--.|+= |...+..=-+-....|++.-+.||+..+.
T Consensus 161 -----------------~g~t~vtyi~~~D----PgG~iP~W~~N~~g~~~~~~~~~~r~sf~ 202 (204)
T cd08908 161 -----------------SGKSKLTYMCRID----LRGHMPEWYTKSFGHLCAAEVVKIRDSFS 202 (204)
T ss_pred -----------------CCcEEEEEEEEeC----CCCCCcHHHHhhHHHHHHHHHHHHHhhcc
Confidence 2568887644443 44445555566688999999999998764
No 77
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=93.66 E-value=2.3 Score=44.47 Aligned_cols=178 Identities=15% Similarity=0.179 Sum_probs=97.9
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhcc--ccchhhhhhcCCCCcceeee
Q 003261 610 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDE--RLRSEWDILSNGGPMQEMAH 687 (835)
Q Consensus 610 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrde--~~R~eWd~ls~G~~vqe~~~ 687 (835)
..++|... . ..++|+|.+|++...+|. + .++-.-+|++++.||+||.|. ..|.+||..+.. ++.+-+
T Consensus 20 ~~~~W~~~-~--~~~~i~v~~~~~~~~~~~----~--~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~--~~vle~ 88 (208)
T cd08903 20 DESGWKTC-R--RTNEVAVSWRPSAEFAGN----L--YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKD--FEVVEA 88 (208)
T ss_pred cccCCEEE-E--cCCCEEEEeeecCCCCCc----E--EEEEEEecCCHHHHHHHHHhccchhhhhhhhcccc--EEEEEE
Confidence 56789977 4 347999999998655553 2 455566799999999999864 478999975432 333444
Q ss_pred cccCCCCCceEEEEEeccc--C-CCCCceEEEEccccCCCCcEEEEe-ecchhhhhhhhcCCCCCCcc--ccCCccEEcC
Q 003261 688 IAKGQDHGNCVSLLRASAI--N-ANQSSMLILQETCTDAAGSLVVYA-PVDIPAMHVVMNGGDSAYVA--LLPSGFAIVP 761 (835)
Q Consensus 688 ia~g~~~gn~vsllr~~~~--~-~~~~~~liLQes~td~sgs~vVyA-PvD~~~m~~vm~G~D~~~v~--LLPSGF~I~P 761 (835)
| +....|..++.... + -+..++++++-...+..|.+++.. -++-+.+ ...+.+|- .-|+|+.|.|
T Consensus 89 i----d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~-----P~~~~~VR~~~~~~g~~~~~ 159 (208)
T cd08903 89 I----SDDVSVCRTVTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLC-----PPQAGFVRGFNHPCGCFCEP 159 (208)
T ss_pred e----cCCEEEEEEecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCC-----CCCCCeEEEeeeccEEEEEE
Confidence 4 33334332222111 1 234677776653334556665544 2222221 11233342 4457777765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh-HhhhhhHHHHHHHHHhc
Q 003261 762 DGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 832 (835)
Q Consensus 762 dg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t-v~~li~~tv~~Ik~Al~ 832 (835)
-.. ..++|.+|.-+|+= |...|...-|.+ +...+-.+.+.++.+|.
T Consensus 160 ~~~---------------------~~~~t~v~~~~~~D----pkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 160 VPG---------------------EPDKTQLVSFFQTD----LSGYLPQTVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred CCC---------------------CCCceEEEEEEEec----cCCCcCHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 110 01356666555543 444454444433 22344457777777764
No 78
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=93.43 E-value=2.2 Score=44.54 Aligned_cols=180 Identities=14% Similarity=0.171 Sum_probs=93.0
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeec-ccChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 003261 610 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWL-PVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 688 (835)
Q Consensus 610 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wL-pv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~i 688 (835)
-..+|... . ..++|+|-.|... |. |+. --++...+ .+|++.+|++|.|...|.+||... +|.--|
T Consensus 19 ~~~~W~l~-~--~~~~i~Vy~r~~~---~s--~~~-~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~-----~~~~~l 84 (207)
T cd08911 19 EPDGWEPF-I--EKKDMLVWRREHP---GT--GLY-EYKVYGSFDDVTARDFLNVQLDLEYRKKWDATA-----VELEVV 84 (207)
T ss_pred cCCCcEEE-E--EcCceEEEEeccC---CC--CcE-EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhh-----eeEEEE
Confidence 34569877 3 2567999888763 22 222 34554545 699999999999999999999743 333233
Q ss_pred ccCCCCCceEEEEEeccc-CCCCCceEEEEccccCCC-CcEEEEe-ecchhhhhhhhcCCCCC--CccccCCccEEcCCC
Q 003261 689 AKGQDHGNCVSLLRASAI-NANQSSMLILQETCTDAA-GSLVVYA-PVDIPAMHVVMNGGDSA--YVALLPSGFAIVPDG 763 (835)
Q Consensus 689 a~g~~~gn~vsllr~~~~-~~~~~~~liLQes~td~s-gs~vVyA-PvD~~~m~~vm~G~D~~--~v~LLPSGF~I~Pdg 763 (835)
.+..+.++.|--.+.... --...+..+-+-...|.. +.++|.. -|+-+.. ..-+. -|..+.+|+.|-|.+
T Consensus 85 e~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~-----P~~~g~VRv~~~~~~~~i~p~~ 159 (207)
T cd08911 85 DEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSY-----PESPKKVRVEDYWSYMVIRPHK 159 (207)
T ss_pred EccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCC-----CCCCCCEEEEEeEEEEEEEeCC
Confidence 332233444333333321 123345555443334543 3434432 1221110 00111 244567777777743
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh-HhhhhhHHHHHHHHHhc
Q 003261 764 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 832 (835)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t-v~~li~~tv~~Ik~Al~ 832 (835)
.. ..+|+-++.-++ . .|...|..--|.. +...+-.++++++.|..
T Consensus 160 ~~--------------------~~~~~~~~~~~~--~--dPgG~IP~~lvN~~~~~~~~~~l~~l~~a~~ 205 (207)
T cd08911 160 SF--------------------DEPGFEFVLTYF--D--NPGVNIPSYITSWVAMSGMPDFLERLRNAAL 205 (207)
T ss_pred CC--------------------CCCCeEEEEEEE--e--CCCCccCHHHHHHHHHhhccHHHHHHHHHHh
Confidence 21 114666664333 2 4554443322211 33333458888888864
No 79
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=93.20 E-value=0.019 Score=48.20 Aligned_cols=42 Identities=29% Similarity=0.439 Sum_probs=31.4
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhh
Q 003261 144 QIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 185 (835)
Q Consensus 144 Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRR 185 (835)
.++.|+++|...+++.......|..+.+|+..||+.||-.|+
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 467799999999999999999999999999999999997554
No 80
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=93.00 E-value=4.5 Score=42.63 Aligned_cols=173 Identities=18% Similarity=0.222 Sum_probs=95.5
Q ss_pred CCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhh-cCCCCcceeeeccc
Q 003261 612 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL-SNGGPMQEMAHIAK 690 (835)
Q Consensus 612 ~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~l-s~G~~vqe~~~ia~ 690 (835)
.+|..+ + ..+++.+..+|.. +|.|. =--++++=+|.+|..|+..+-+ .|.+||.- ..+. .+-+|
T Consensus 27 k~w~~~-~--~~~~~e~~ykK~~--d~~~l---k~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~---~ie~l-- 91 (205)
T cd08909 27 KGWISC-S--SSDNTELAYKKVG--DGNPL---RLWKVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQWK---VVETL-- 91 (205)
T ss_pred cCCccc-C--CcCCeEEEEecCC--CCCce---EEEEEEEEeCCCHHHHHHHHHh--hHhhHHhhcceeE---EEEEe--
Confidence 478776 2 3578889999864 45553 2345688889666666554444 59999962 2222 22222
Q ss_pred CCCCCceEEEEEecccCCC-CCceEEEEccccC-CCCcEEE-EeecchhhhhhhhcCCCCCCccccCCccEEcCCCCCCC
Q 003261 691 GQDHGNCVSLLRASAINAN-QSSMLILQETCTD-AAGSLVV-YAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSR 767 (835)
Q Consensus 691 g~~~gn~vsllr~~~~~~~-~~~~liLQes~td-~sgs~vV-yAPvD~~~m~~vm~G~D~~~v~LLPSGF~I~Pdg~~~~ 767 (835)
+..+.|=-.+++...+- ..+..+++-..+| ..|++++ +..|+-+.-.. .|+= -+.++=+||.|-|.|.
T Consensus 92 --d~~tdi~~y~~~~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~--~g~V--Ra~~~~~gylI~P~~~--- 162 (205)
T cd08909 92 --DKQTEVYQYVLNCMAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPL--LGGV--RAVVLDSQYLIEPCGS--- 162 (205)
T ss_pred --CCCcEEEEEEeecCCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCC--CCcE--EEEEEcCcEEEEECCC---
Confidence 22244444444433222 3455565542334 5777644 33344332111 1211 3445668888888332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHhHhhhhhHHHHHHHHHhc
Q 003261 768 GPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQ 832 (835)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~tv~~li~~tv~~Ik~Al~ 832 (835)
|+|.||---|+=.... +..=-+-.+..|++.-+.||+..+.
T Consensus 163 --------------------g~trvt~i~~vDpkG~----~P~W~~n~~g~~~~~~~~~~r~sf~ 203 (205)
T cd08909 163 --------------------GKSRLTHICRVDLKGH----SPEWYNKGFGHLCAAEAARIRNSFQ 203 (205)
T ss_pred --------------------CCEEEEEEEEecCCCC----ChHHHHHhHHHHHHHHHHHHHhhcc
Confidence 3577765544433333 2323455578889999999998764
No 81
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=92.61 E-value=1.3 Score=47.51 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=46.6
Q ss_pred CCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhh
Q 003261 609 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 676 (835)
Q Consensus 609 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~l 676 (835)
...++|..- . ..++|+|-++. |. -+++-+.-+-+++|++.||++|.|...|.+||..
T Consensus 53 a~~~~W~l~-~--dkdgIkVytr~-----~s---~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~ 109 (236)
T cd08914 53 AAKSGWEVT-S--TVEKIKIYTLE-----EH---DVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPH 109 (236)
T ss_pred cccCCCEEE-E--ccCCEEEEEec-----CC---CcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHh
Confidence 347899865 3 46899999984 22 2578888888899999999999999999999974
No 82
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=92.18 E-value=1.4 Score=47.35 Aligned_cols=66 Identities=23% Similarity=0.385 Sum_probs=48.7
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 003261 610 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 688 (835)
Q Consensus 610 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~i 688 (835)
..++|..- . ..++|+|.++.+ ..+++-..=+-+++|++.||++|.|...|.+||. +...++.+..|
T Consensus 53 ~~~~W~l~-~--~k~gIkVytr~~--------s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~--~~~e~evI~~i 118 (235)
T cd08873 53 AKSDWTVA-S--STTSVTLYTLEQ--------DGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDP--HGRSCEEVKRV 118 (235)
T ss_pred ccCCCEEE-E--cCCCEEEEEecC--------CCceEEEEEEEecCCHHHHHHHHhCcchhhhhhh--cccEEEEEEEe
Confidence 46799865 3 468999999873 1244555555589999999999999999999997 33345555555
No 83
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=91.31 E-value=5.7 Score=40.34 Aligned_cols=150 Identities=19% Similarity=0.310 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhh
Q 003261 594 LAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEW 673 (835)
Q Consensus 594 LaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrde~~R~eW 673 (835)
|+++.+..|.. ......++|... .+ .+++.+.+++... +.+ ..+...++..-++.++..+|..|.+... +|
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~W~~~-~~--~~~~~~~~~~~~~--~~~-~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~W 72 (206)
T PF01852_consen 2 LAEELMQEELA-LAQEDEDGWKLY-KD--KKNGDVYYKKVSP--SDS-CPIKMFKAEGVVPASPEQVVEDLLDDRE--QW 72 (206)
T ss_dssp HHHHHHHHHHH-HHHHTCTTCEEE-EE--ETTTCEEEEEEEC--SSS-TSCEEEEEEEEESSCHHHHHHHHHCGGG--HH
T ss_pred HHHHHHHHHHH-HhhcCCCCCeEe-Ec--cCCCeEEEEEeCc--ccc-ccceEEEEEEEEcCChHHHHHHHHhhHh--hc
Confidence 45555556653 335677799988 42 2333334444321 111 1355678888999888877777777444 99
Q ss_pred hhhcCCCCcceeeecccCCCCCceEEEEEecccC---CCCCceEEEEccccCCCCcEEEE-eecchhhhhhhhcCCCCCC
Q 003261 674 DILSNGGPMQEMAHIAKGQDHGNCVSLLRASAIN---ANQSSMLILQETCTDAAGSLVVY-APVDIPAMHVVMNGGDSAY 749 (835)
Q Consensus 674 d~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~~---~~~~~~liLQes~td~sgs~vVy-APvD~~~m~~vm~G~D~~~ 749 (835)
|.... .++.+-.| +++..|.....+..- -...+.++++-...+.-|.++|. ..||.+..... .+.+
T Consensus 73 d~~~~--~~~~le~~----~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~----~~~~ 142 (206)
T PF01852_consen 73 DKMCV--EAEVLEQI----DEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPN----SKGY 142 (206)
T ss_dssp STTEE--EEEEEEEE----ETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-----TTS
T ss_pred ccchh--hheeeeec----CCCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccceEEEEEeeecccccccc----ccCc
Confidence 98543 23344444 233555555444322 22356777765444566765554 57877764322 2344
Q ss_pred cc--ccCCccEEcCC
Q 003261 750 VA--LLPSGFAIVPD 762 (835)
Q Consensus 750 v~--LLPSGF~I~Pd 762 (835)
|- +++|||.|-|.
T Consensus 143 VR~~~~~s~~~i~~~ 157 (206)
T PF01852_consen 143 VRAEILISGWVIRPL 157 (206)
T ss_dssp EEEEEESEEEEEEEE
T ss_pred ceeeeeeEeEEEEEc
Confidence 43 89999999984
No 84
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=90.17 E-value=5.2 Score=39.48 Aligned_cols=140 Identities=11% Similarity=0.138 Sum_probs=75.1
Q ss_pred ceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceec
Q 003261 400 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 479 (835)
Q Consensus 400 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~ 479 (835)
.+-+|.-.+..+-+++-|..+|-+.||. |.-++|++.|..| . .....++...+ ..+.-|.=|.+. .
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~----~~~~~~l~~~~~~----~--~~r~~i~~~~~--g~~~~w~s~~~~--~ 70 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIATWPDLFSE----YAEAEVLEEDGDT----V--RFRLTMHPDAN--GTVWSWVSERTL--D 70 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhhhhhhccc----eEEEEEEEecCCe----E--EEEEEEEeccC--CEEEEEEEEEEe--c
Confidence 4566777899999999999999999999 5777888754322 1 11122223222 122223234332 3
Q ss_pred CCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHH
Q 003261 480 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 559 (835)
Q Consensus 480 ~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlat 559 (835)
...|-|.=..+.. .+ + ..+=--..+++.++| |+|++..+++...-. .+.-+++....--.-+.=+++
T Consensus 71 ~~~~~i~~~~~~~---~p----~---~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~ 137 (146)
T cd08860 71 PVNRTVRARRVET---GP----F---AYMNIRWEYTEVPEG-TRMRWVQDFEMKPGA--PVDDAAMTDRLNTNTRAQMAR 137 (146)
T ss_pred CCCcEEEEEEecC---CC----c---ceeeeeEEEEECCCC-EEEEEEEEEEECCCC--ccchHHHHHHHhcccHHHHHH
Confidence 3334333112111 11 1 122223446888887 999999998865211 222223322222233445677
Q ss_pred HHHHHHH
Q 003261 560 LQRQCEC 566 (835)
Q Consensus 560 LqRqcer 566 (835)
|.+.+|+
T Consensus 138 Lk~~aE~ 144 (146)
T cd08860 138 IKKKIEA 144 (146)
T ss_pred HHHHhhh
Confidence 7777765
No 85
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=90.16 E-value=0.84 Score=43.73 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=26.6
Q ss_pred CCCCHHHHH-HHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecc
Q 003261 138 HRHTPQQIQ-ELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 182 (835)
Q Consensus 138 tr~T~~Ql~-~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQ 182 (835)
.+||.++.. .+...+. +. ....++|+++|+++.++..|.+
T Consensus 11 r~ys~EfK~~aV~~~~~-~g----~sv~evA~e~gIs~~tl~~W~r 51 (121)
T PRK09413 11 RRRTTQEKIAIVQQSFE-PG----MTVSLVARQHGVAASQLFLWRK 51 (121)
T ss_pred CCCCHHHHHHHHHHHHc-CC----CCHHHHHHHHCcCHHHHHHHHH
Confidence 457776644 4444443 22 2356789999999999999943
No 86
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=89.54 E-value=4.7 Score=37.88 Aligned_cols=119 Identities=14% Similarity=0.171 Sum_probs=64.5
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecC
Q 003261 401 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 480 (835)
Q Consensus 401 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~ 480 (835)
+-.+...+.++.++|.|.+.|.+-+|.+. .+++++. +...+ +....+ .|+ ..|--...+|..--++
T Consensus 6 ~~~i~a~~e~v~~~l~D~~~~~~w~p~~~----~~~~~~~-------~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~ 71 (144)
T cd05018 6 EFRIPAPPEEVWAALNDPEVLARCIPGCE----SLEKIGP-------NEYEA-TVKLKV-GPV-KGTFKGKVELSDLDPP 71 (144)
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhccchh----hccccCC-------CeEEE-EEEEEE-ccE-EEEEEEEEEEEecCCC
Confidence 44567788999999999999999999854 4566542 22221 122222 232 2232223455543344
Q ss_pred CeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhh
Q 003261 481 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLI 545 (835)
Q Consensus 481 g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~ 545 (835)
..+++.-..... .. + ...=--+-+++. +|.++|||.-+++..- .+..|..+++
T Consensus 72 ~~~~~~~~~~~~---~~----~---~~~~~~~~l~~~-~~gT~v~~~~~~~~~g-~l~~l~~~~~ 124 (144)
T cd05018 72 ESYTITGEGKGG---AG----F---VKGTARVTLEPD-GGGTRLTYTADAQVGG-KLAQLGSRLI 124 (144)
T ss_pred cEEEEEEEEcCC---Cc----e---EEEEEEEEEEec-CCcEEEEEEEEEEEcc-ChhhhCHHHH
Confidence 554444221110 00 1 111122346777 6679999999999653 3444455544
No 87
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=89.07 E-value=6.8 Score=37.19 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=74.1
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccce-eeEEeeece
Q 003261 399 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVRE-VNFLRFCKQ 477 (835)
Q Consensus 399 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re-~~flRyckq 477 (835)
|++-.|..++..+-++|.|.+.|.+-+|.+ ...+++..+. ++. . ++.. .|. +.+++|+..
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v----~~~~~l~~~~----~~~-~-~~~~---------~~~~~~~~~~~~~ 62 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPNL----AESRLLERNG----NRV-V-LEQT---------GKQGILFFKFEAR 62 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcCc----eEEEEEEcCC----CEE-E-EEEe---------eeEEEEeeeeeEE
Confidence 346677778999999999999999999994 5666675421 121 1 1111 111 222233221
Q ss_pred ecCCeEEEEEEeccCccCCCCCCCccceeec----C--Ccc-eEeecCC-CccEEEEEEeeeeccccccccchhhhccch
Q 003261 478 HAEGVWAVVDVSIDTIRETSGAPAFVNCRRL----P--SGC-VVQDMPN-GYSKVTWVEHAEYDESQVHQLYKPLIISGM 549 (835)
Q Consensus 478 ~~~g~waVvDvSld~~~~~~~~~~~~~~~r~----P--SGc-lIq~~~n-G~skVtwVeH~e~d~~~v~~lyrpl~~Sg~ 549 (835)
++.++.... +.. ..++++.. + .|+ -+++.++ |.++|+|--|++... . ++-++++.-+
T Consensus 63 ------v~~~~~~~~--~~~---~~i~~~~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~-~---~p~~l~~~~~ 127 (144)
T cd08866 63 ------VVLELRERE--EFP---RELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDF-F---APVFLVEFVL 127 (144)
T ss_pred ------EEEEEEEec--CCC---ceEEEEEcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCC-C---CCHHHHHHHH
Confidence 122211100 000 01111111 0 122 3578887 789999988877653 2 3336676666
Q ss_pred hHHHHHHHHHHHHHHH
Q 003261 550 GFGAQRWVATLQRQCE 565 (835)
Q Consensus 550 afGA~rWlatLqRqce 565 (835)
-=+.++-++.|.++||
T Consensus 128 ~~~~~~~l~~lr~~ae 143 (144)
T cd08866 128 RQDLPTNLLAIRAEAE 143 (144)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6667788888888876
No 88
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=88.35 E-value=15 Score=39.51 Aligned_cols=187 Identities=18% Similarity=0.171 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCceeccCCCCC-----Cc-eEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHh
Q 003261 590 SMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVD-----ED-VRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNF 663 (835)
Q Consensus 590 sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~-----~d-Vrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~F 663 (835)
-|+.||..-+.-|- .+.-...--|.+. .+.+. |. .|++.+.. .+..+...+..+-++-.+.+.|..|.++
T Consensus 3 ~~~~lA~~am~Ell-~~a~~~~plWi~~-~~~~~~~l~~dey~~~f~~~~--~~~~~~~~~eASR~~glV~m~~~~lVe~ 78 (229)
T cd08875 3 GLLELAEEAMDELL-KLAQGGEPLWIKS-PGMKPEILNPDEYERMFPRHG--GSKPGGFTTEASRACGLVMMNAIKLVEI 78 (229)
T ss_pred HHHHHHHHHHHHHH-HHhccCCCCceec-CCCCccccCHHHHhhcccCcC--CCCCCCCeEEEEeeeEEEecCHHHHHHH
Confidence 47889999999998 4444556789987 44321 22 22222221 1212234577888999999999999999
Q ss_pred hhccccchh-hhhhcCCCCcceeeecccCCCCCceEEEEEecccC----CCCCceEEEEccccCCCCcEEEEe-ecchhh
Q 003261 664 LRDERLRSE-WDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAIN----ANQSSMLILQETCTDAAGSLVVYA-PVDIPA 737 (835)
Q Consensus 664 Lrde~~R~e-Wd~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~~----~~~~~~liLQes~td~sgs~vVyA-PvD~~~ 737 (835)
|.|..++.+ .+-.+.-..+-++..=..|..++..+.|+..+-.- ..-.+..+|.-|+--.-|..+|-- .+|-..
T Consensus 79 lmD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~ 158 (229)
T cd08875 79 LMDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQ 158 (229)
T ss_pred HhChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeecccc
Confidence 999555544 33333322222222222223446677787765211 124689999985556788776633 333210
Q ss_pred hhhhhcCCCCC---CccccCCccEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccc
Q 003261 738 MHVVMNGGDSA---YVALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKL 808 (835)
Q Consensus 738 m~~vm~G~D~~---~v~LLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l 808 (835)
+..-+. .--.+||||-|=|- .+|+|-+|+-=++-++..+.-.+
T Consensus 159 -----~~p~~~~~~r~~~~PSGcLIq~~-----------------------~nG~SkVtwVeH~e~d~~~~~~l 204 (229)
T cd08875 159 -----TAPPPASFVRCRRLPSGCLIQDM-----------------------PNGYSKVTWVEHVEVDEKPVHLL 204 (229)
T ss_pred -----cCCCCCCccEEEEecCcEEEEEC-----------------------CCCceEEEEEEEEeccCCccccc
Confidence 111111 23489999999771 12578888887777765544433
No 89
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=88.26 E-value=3.4 Score=43.49 Aligned_cols=99 Identities=19% Similarity=0.150 Sum_probs=68.6
Q ss_pred cceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEee-eceecC-CeEEEEEEeccCccCCCCCCCccceeec
Q 003261 431 RTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRF-CKQHAE-GVWAVVDVSIDTIRETSGAPAFVNCRRL 508 (835)
Q Consensus 431 ~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRy-ckq~~~-g~waVvDvSld~~~~~~~~~~~~~~~r~ 508 (835)
.++.++++..+. ++...+.|.+..+|-| +..|+|..|.. +...+. ..++|+..+++.-.-......++|.+ -
T Consensus 76 ~~~~l~~~~~~~----~~~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr~~-y 149 (208)
T cd08864 76 DLEPVEVDGEGD----GVVTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVLGR-Y 149 (208)
T ss_pred eeEEeeecCCCc----cceEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEEEE-E
Confidence 345555544332 2356888889999999 89999999999 666652 67899999987432110112478887 6
Q ss_pred CCcceEeecCC---CccEEEEEEeeeeccc
Q 003261 509 PSGCVVQDMPN---GYSKVTWVEHAEYDES 535 (835)
Q Consensus 509 PSGclIq~~~n---G~skVtwVeH~e~d~~ 535 (835)
=||..|+..|. +-.+|+|+==...|+.
T Consensus 150 ~SgE~~~~~p~~~~~~~~vew~maT~sDpG 179 (208)
T cd08864 150 ASVEKISYLPDADGKSNKVEWIMATRSDAG 179 (208)
T ss_pred EEEEEEEEcCccCCCcCCEEEEEEEeeCCC
Confidence 79999998885 4789999993334444
No 90
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=87.40 E-value=2.8 Score=44.81 Aligned_cols=39 Identities=33% Similarity=0.405 Sum_probs=28.0
Q ss_pred chhhHHHHHHHHHHhh--hHHHHHhHHHHHhhHhHHhhhcC
Q 003261 182 QNRRTQMKTQLERHEN--SLLRQENDKLRAENMSIRDAMRN 220 (835)
Q Consensus 182 QNRRaK~Kkk~~r~e~--~~l~~en~~L~~en~~l~ea~~~ 220 (835)
||-|-|.|.+..+-|. ..|..+|++|+.||++|++..++
T Consensus 82 QtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~ 122 (292)
T KOG4005|consen 82 QTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINES 122 (292)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667776665555443 55788899999999999887653
No 91
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=87.32 E-value=14 Score=34.45 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=72.8
Q ss_pred ceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceec
Q 003261 400 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 479 (835)
Q Consensus 400 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~ 479 (835)
.+..|...+.++.+.|.|.+.|.+.+|. +..++++..+.. |.-...+ +.+- ..+.++-+.++|...-
T Consensus 6 ~s~~i~ap~e~V~~~l~D~~~~~~w~p~----~~~~~~~~~~~~----~~~~~~~--~~~~--~~~~~~~~~~~~~~~~- 72 (140)
T cd07819 6 REFEIEAPPAAVMDVLADVEAYPEWSPK----VKSVEVLLRDND----GRPEMVR--IGVG--AYGIKDTYALEYTWDG- 72 (140)
T ss_pred EEEEEeCCHHHHHHHHhChhhhhhhCcc----eEEEEEeccCCC----CCEEEEE--EEEe--eeeEEEEEEEEEEEcC-
Confidence 4567788899999999999999999998 455666655432 2222222 2221 2244555556665432
Q ss_pred CCe--EEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHH
Q 003261 480 EGV--WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWV 557 (835)
Q Consensus 480 ~g~--waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWl 557 (835)
... |-+.+. .. +.... .-.-+++.++ .|+|||.-+++..- . +...++....--+.+.-+
T Consensus 73 ~~~i~~~~~~~-------~~----~~~~~---~~~~~~~~~~-~t~vt~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~ 133 (140)
T cd07819 73 AGSVSWTLVEG-------EG----NRSQE---GSYTLTPKGD-GTRVTFDLTVELTV-P---LPGFLKRKAEPLVLDEAL 133 (140)
T ss_pred CCcEEEEEecc-------cc----eeEEE---EEEEEEECCC-CEEEEEEEEEEecC-C---CCHHHHHHhhhHHHHHHH
Confidence 222 222111 01 11111 1256788877 59999999998754 2 333334333333344445
Q ss_pred HHHHHH
Q 003261 558 ATLQRQ 563 (835)
Q Consensus 558 atLqRq 563 (835)
..|.++
T Consensus 134 ~~l~~~ 139 (140)
T cd07819 134 KGLKKR 139 (140)
T ss_pred HhHhhh
Confidence 555443
No 92
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=86.59 E-value=5.5 Score=42.34 Aligned_cols=112 Identities=14% Similarity=0.188 Sum_probs=78.2
Q ss_pred EechhhHHHHhcCh---hhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecCC
Q 003261 405 IINSLALVETLMDP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEG 481 (835)
Q Consensus 405 ~~~~~~LVe~lmD~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~g 481 (835)
.+.|..|-+.|+|. .+|=.+ |.+-.|++..+. .|+ .++|-+.+.|.|+- .||+-++|---+.++.
T Consensus 63 Dvtp~~~~Dv~~D~eYRkkWD~~----vi~~e~ie~d~~--tg~-----~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~k 130 (219)
T KOG2761|consen 63 DVTPEIVRDVQWDDEYRKKWDDM----VIELETIEEDPV--TGT-----EVVYWVKKFPFPMS-NRDYVYVRRWWESDEK 130 (219)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHH----hhhheeeeecCC--CCc-----eEEEEEEeCCcccC-CccEEEEEEEEecCCc
Confidence 45788999999995 599887 444555555441 222 78999999998876 5999999887777777
Q ss_pred eEEEEEEeccCccCCCCCCCccceeecCCcceEe-----ecCCC-ccEEEEEEe
Q 003261 482 VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQ-----DMPNG-YSKVTWVEH 529 (835)
Q Consensus 482 ~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq-----~~~nG-~skVtwVeH 529 (835)
.-.||-.|+..-.- |.....+|..-.=||.+|+ +-++| .|-++|++|
T Consensus 131 ~~~i~s~~v~h~s~-P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T KOG2761|consen 131 DYYIVSKSVQHPSY-PPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHN 183 (219)
T ss_pred eEEEEEecccCCCc-CCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEEC
Confidence 77777777663211 1111357888889999999 55555 355556554
No 93
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=86.43 E-value=1.8 Score=42.29 Aligned_cols=86 Identities=24% Similarity=0.302 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhh-cccceeEEeecchhhHHHHHHHHHHhhhHHHHHhHHHHHhhHhHHh
Q 003261 138 HRHTPQQIQELESLFKECPHPDEKQRLELSKRL-CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRD 216 (835)
Q Consensus 138 tr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~L-gLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~e 216 (835)
.+|+.+++..+- -.+|=++| |++...|-.|=|.||+-.-+-.........-++-+.|..++..|..
T Consensus 22 d~lsDd~LvsmS-------------VReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~q 88 (135)
T KOG4196|consen 22 DRLSDDELVSMS-------------VRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQ 88 (135)
T ss_pred CCcCHHHHHHhh-------------HHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888776651 12333344 7888888888898887655544444444444445556666666655
Q ss_pred hhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHHHHh
Q 003261 217 AMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 257 (835)
Q Consensus 217 a~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~ 257 (835)
+..+|+.||++++.|++-..
T Consensus 89 ---------------------qv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 89 ---------------------QVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHH
Confidence 44578888888888887544
No 94
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=85.92 E-value=8.5 Score=36.54 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=77.4
Q ss_pred ceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceec
Q 003261 400 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 479 (835)
Q Consensus 400 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~ 479 (835)
.+..|...+..+.+++-|.+.|.+.+|.+ ...+|+..+. ++ +.+++.+..|. -.|++. .|++-. .
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~----~~~~vl~~~~----~~----~~~~~~~~~~~-~~~~~~-~~~~~~-~ 67 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWC----TASRVLERDE----DE----LEAELTVGFGG-IRESFT-SRVTLV-P 67 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCc----cccEEEEcCC----CE----EEEEEEEeecc-ccEEEE-EEEEec-C
Confidence 35566778889999999999999999994 5566666432 12 22333333332 234443 333321 1
Q ss_pred CCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHH
Q 003261 480 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 559 (835)
Q Consensus 480 ~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlat 559 (835)
+. .+ -=.++++ . + ..+=--..+++.++|.|+|+|.-|++..-. |+..|++.-+.=.+++-|.+
T Consensus 68 ~~-~i-~~~~~~g----~----~---~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~----l~~~l~~~~~~~~~~~~l~~ 130 (138)
T cd07813 68 PE-SI-EAELVDG----P----F---KHLEGEWRFKPLGENACKVEFDLEFEFKSR----LLEALAGLVFDEVAKKMVDA 130 (138)
T ss_pred CC-EE-EEEecCC----C----h---hhceeEEEEEECCCCCEEEEEEEEEEECCH----HHHHHHHHHHHHHHHHHHHH
Confidence 33 22 1122222 1 1 111123457889999999999999998733 33333333333336677888
Q ss_pred HHHHHHH
Q 003261 560 LQRQCEC 566 (835)
Q Consensus 560 LqRqcer 566 (835)
+.+.|++
T Consensus 131 f~~~~~~ 137 (138)
T cd07813 131 FEKRAKQ 137 (138)
T ss_pred HHHHHhh
Confidence 8777765
No 95
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=84.97 E-value=1.6 Score=45.72 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=60.1
Q ss_pred CCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhccccchhhhhhcCCCCcceeee
Q 003261 609 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMAH 687 (835)
Q Consensus 609 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~ 687 (835)
-.+.+|... .+ .++|+|-+|.. +|. .+.--++...++ ++|+.++++|.|...|.+||...- ++..
T Consensus 22 ~~~~~W~l~-~~--~~~i~Vy~r~~---~~s---~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~-----~~~~ 87 (207)
T cd08910 22 LDGAAWELL-VE--SSGISIYRLLD---EQS---GLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVK-----ELYE 87 (207)
T ss_pred CCCCCeEEE-Ee--cCCeEEEEecc---CCC---CcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHH-----hhee
Confidence 344579977 33 56899998875 222 244677778889 999999999999999999998532 2222
Q ss_pred cccCCCCCceEEEEEeccc-CCCCCceEEEEc
Q 003261 688 IAKGQDHGNCVSLLRASAI-NANQSSMLILQE 718 (835)
Q Consensus 688 ia~g~~~gn~vsllr~~~~-~~~~~~~liLQe 718 (835)
. . ++++.|--.+.+.. --+..++++++.
T Consensus 88 ~--~-~~~~~i~y~~~k~PwPvs~RD~V~~r~ 116 (207)
T cd08910 88 K--E-CDGETVIYWEVKYPFPLSNRDYVYIRQ 116 (207)
T ss_pred e--c-CCCCEEEEEEEEcCCCCCCceEEEEEE
Confidence 1 1 33455544444321 134456766664
No 96
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=83.71 E-value=61 Score=33.95 Aligned_cols=195 Identities=12% Similarity=0.129 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhh-ccc
Q 003261 590 SMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLR-DER 668 (835)
Q Consensus 590 sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLr-de~ 668 (835)
+-.++++.....|-.-. ....+|... . .+.++++|.++.. |+. | --.+.-.-+|+|++.||++|. |-.
T Consensus 5 ~y~~~~~~~~~~~~~~~--~~~~~W~~~-~-~~~~gi~v~s~~~---~~~--~--k~~k~e~~i~~~~~~l~~~l~~d~e 73 (209)
T cd08905 5 SYIKQGEEALQKSLSIL--QDQEGWKTE-I-VAENGDKVLSKVV---PDI--G--KVFRLEVVVDQPLDNLYSELVDRME 73 (209)
T ss_pred HHHHHHHHHHHHHHHHh--ccccCCEEE-E-ecCCCCEEEEEEc---CCC--C--cEEEEEEEecCCHHHHHHHHHhchh
Confidence 33445555555555444 245689965 2 2356788888665 222 1 234456677999999996666 568
Q ss_pred cchhhhhhcCCCCcceeeecccCCCCCceEEEEEeccc--C-CCCCceEEEEccccCCCCcEE-EEeecchhhhhhhhcC
Q 003261 669 LRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI--N-ANQSSMLILQETCTDAAGSLV-VYAPVDIPAMHVVMNG 744 (835)
Q Consensus 669 ~R~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~--~-~~~~~~liLQes~td~sgs~v-VyAPvD~~~m~~vm~G 744 (835)
.+.+|+..+.. ++.+.+| +...+|.-....+. . -+..++++++-..-+. +.++ +.--++.+.+ .
T Consensus 74 ~~~~W~~~~~~--~~vl~~i----d~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~-~~~~~~~~s~~~~~~-----P 141 (209)
T cd08905 74 QMGEWNPNVKE--VKILQRI----GKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRG-STCVLAGMATHFGLM-----P 141 (209)
T ss_pred hhceecccchH--HHHHhhc----CCCceEEEEEeccCCCCccCccceEEEEEEEEcC-CcEEEEEEeecCCCC-----C
Confidence 99999974432 2223233 33344444321111 1 3446777766422232 3333 2222332221 1
Q ss_pred CCCCC--ccccCCccEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh-Hhhhhh
Q 003261 745 GDSAY--VALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLIS 821 (835)
Q Consensus 745 ~D~~~--v~LLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t-v~~li~ 821 (835)
.-+.+ +...++|+.+-|-+.. .+.|.+|.-+++= |...|..--|.. +-...-
T Consensus 142 ~~~~~VR~~~~~~~w~l~p~~~~---------------------~~~t~v~~~~~~D----pkG~iP~~lvN~~~~~~~~ 196 (209)
T cd08905 142 EQKGFIRAENGPTCIVLRPLAGD---------------------PSKTKLTWLLSID----LKGWLPKSIINQVLSQTQV 196 (209)
T ss_pred CCCCeEEEEeeccEEEEEECCCC---------------------CCceEEEEEEeec----CCCCCCHHHHHHHhHHhHH
Confidence 11222 2356666666662211 1357666555543 333343333333 233344
Q ss_pred HHHHHHHHHhc
Q 003261 822 CTVQKIKAALQ 832 (835)
Q Consensus 822 ~tv~~Ik~Al~ 832 (835)
.|++.+|..|.
T Consensus 197 ~~~~~Lr~~~~ 207 (209)
T cd08905 197 DFANHLRQRMA 207 (209)
T ss_pred HHHHHHHHHHh
Confidence 57777777765
No 97
>PRK10724 hypothetical protein; Provisional
Probab=83.56 E-value=22 Score=35.79 Aligned_cols=137 Identities=13% Similarity=0.151 Sum_probs=83.4
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeecee
Q 003261 399 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 478 (835)
Q Consensus 399 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~ 478 (835)
+.+.+|.-.+.++.+.+.|.++|-+.+|- |...+|+.-.. ++ +.+++.+--.-+ ++-|.-|+.-.
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~----~~~s~vl~~~~----~~----~~a~l~v~~~g~--~~~f~srv~~~- 82 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPG----CTGSRVLESTP----GQ----MTAAVDVSKAGI--SKTFTTRNQLT- 82 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCcc----cCeEEEEEecC----CE----EEEEEEEeeCCc--cEEEEEEEEec-
Confidence 45678888999999999999999999888 66677776433 12 467776644433 33333333332
Q ss_pred cCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHH
Q 003261 479 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 558 (835)
Q Consensus 479 ~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWla 558 (835)
.++ .+.+ ..+++ + | +.+=.-.-+++.++|.|+|+.--++|+.. .||.+++....-=.|++-+.
T Consensus 83 ~~~-~I~~-~~~~G----p----F---~~l~g~W~f~p~~~~~t~V~~~l~fef~s----~l~~~~~~~~~~~~~~~mv~ 145 (158)
T PRK10724 83 SNQ-SILM-QLVDG----P----F---KKLIGGWKFTPLSQEACRIEFHLDFEFTN----KLIELAFGRVFKELASNMVQ 145 (158)
T ss_pred CCC-EEEE-EecCC----C----h---hhccceEEEEECCCCCEEEEEEEEEEEch----HHHHHHHHHHHHHHHHHHHH
Confidence 233 3322 22222 2 1 23333344678887789999998888653 34445553333444667777
Q ss_pred HHHHHHHHH
Q 003261 559 TLQRQCECL 567 (835)
Q Consensus 559 tLqRqcerl 567 (835)
+..+-|+.+
T Consensus 146 AF~~Ra~~~ 154 (158)
T PRK10724 146 AFTVRAKEV 154 (158)
T ss_pred HHHHHHHHH
Confidence 776656554
No 98
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=82.29 E-value=0.6 Score=56.29 Aligned_cols=46 Identities=17% Similarity=0.347 Sum_probs=43.0
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHH
Q 003261 145 IQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 190 (835)
Q Consensus 145 l~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 190 (835)
+..|...|..|..|+..+...+|.+.||+.+.||.||++++++...
T Consensus 568 ~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~s 613 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMS 613 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhh
Confidence 7789999999999999999999999999999999999999888664
No 99
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=82.28 E-value=8.8 Score=36.33 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=23.5
Q ss_pred eeEEEechhhHHHHhcChhhhhhhccc
Q 003261 401 TGMVIINSLALVETLMDPNRWAEMFPC 427 (835)
Q Consensus 401 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~ 427 (835)
+.+|.-.+..+-++|-|.++|-+.+|+
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~ 30 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPT 30 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCC
Confidence 456777899999999999999998887
No 100
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=82.10 E-value=2.1 Score=46.03 Aligned_cols=57 Identities=26% Similarity=0.402 Sum_probs=43.1
Q ss_pred CCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhh
Q 003261 609 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 676 (835)
Q Consensus 609 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~l 676 (835)
...++|..- .. .++|+|-++.. +. +++-+.=+-+++|++.||++|.|...|.+||..
T Consensus 56 ~~~~~W~l~-~~--~~gI~Vyt~~~-----s~---~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~ 112 (240)
T cd08913 56 VAKDNWVLS-SE--KNQVRLYTLEE-----DK---FLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKH 112 (240)
T ss_pred cccCCCEEE-Ec--cCCEEEEEEeC-----CC---ccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhh
Confidence 456689865 33 58999999553 11 234455667799999999999999999999974
No 101
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=82.05 E-value=20 Score=33.08 Aligned_cols=135 Identities=16% Similarity=0.085 Sum_probs=69.9
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecC
Q 003261 401 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 480 (835)
Q Consensus 401 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~ 480 (835)
+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..+. ..|+...++... . +.+. -+|.. .++
T Consensus 6 ~~~i~a~~~~V~~~l~d~~~~~~w~~~~----~~~~~~~~~~---~~g~~~~~~~~~----g----~~~~-~~i~~-~~~ 68 (140)
T cd07821 6 SVTIDAPADKVWALLSDFGGLHKWHPAV----ASCELEGGGP---GVGAVRTVTLKD----G----GTVR-ERLLA-LDD 68 (140)
T ss_pred EEEECCCHHHHHHHHhCcCchhhhccCc----ceEEeecCCC---CCCeEEEEEeCC----C----CEEE-EEehh-cCc
Confidence 3457778899999999999999888863 4566655432 234432222110 0 1111 11111 111
Q ss_pred CeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHH
Q 003261 481 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATL 560 (835)
Q Consensus 481 g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatL 560 (835)
..-.|. ..+... +.+ +...-.-+-+.+.++|.|+|+|..+.+.... +..+++...+-=+-+..++.|
T Consensus 69 ~~~~i~-~~~~~~-~~~-------~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~L 135 (140)
T cd07821 69 AERRYS-YRIVEG-PLP-------VKNYVATIRVTPEGDGGTRVTWTAEFDPPEG----LTDELARAFLTGVYRAGLAAL 135 (140)
T ss_pred cCCEEE-EEecCC-CCC-------cccceEEEEEEECCCCccEEEEEEEEecCCC----cchHHHHHHHHHHHHHHHHHH
Confidence 100111 111110 000 0111123557788887899999999887755 333444444444455566666
Q ss_pred HHHHH
Q 003261 561 QRQCE 565 (835)
Q Consensus 561 qRqce 565 (835)
.++||
T Consensus 136 ~~~~~ 140 (140)
T cd07821 136 KAALE 140 (140)
T ss_pred HHhhC
Confidence 66653
No 102
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=81.51 E-value=34 Score=31.87 Aligned_cols=134 Identities=9% Similarity=0.003 Sum_probs=71.9
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecC
Q 003261 401 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 480 (835)
Q Consensus 401 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~ 480 (835)
+..|...+..+-++|.|.+.|.+-+|.+ ..+++++. .+. ++.+-.|....+++ ..|++. .+.
T Consensus 5 ~i~I~ap~e~V~~~~~D~~~~~~w~~~~----~~~~~~~~------~~~------~~~~~~~~g~~~~~-~~~v~~-~~~ 66 (139)
T cd07817 5 SITVNVPVEEVYDFWRDFENLPRFMSHV----ESVEQLDD------TRS------HWKAKGPAGLSVEW-DAEITE-QVP 66 (139)
T ss_pred EEEeCCCHHHHHHHHhChhhhHHHhhhh----cEEEEcCC------Cce------EEEEecCCCCcEEE-EEEEec-cCC
Confidence 4456668889999999999999999974 44566532 111 11112232333433 345544 334
Q ss_pred CeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHH
Q 003261 481 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATL 560 (835)
Q Consensus 481 g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatL 560 (835)
+..++.. ..++.. . .....+ +++.++|.++||+--|.+......-.++-+++....-=..+++|..|
T Consensus 67 ~~~i~~~-~~~~~~--~----~~~~~~------f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 133 (139)
T cd07817 67 NERIAWR-SVEGAD--P----NAGSVR------FRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRF 133 (139)
T ss_pred CCEEEEE-ECCCCC--C----cceEEE------EEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHH
Confidence 4433222 222211 1 111222 46777778999999999877533333434444333333445555555
Q ss_pred HHHHH
Q 003261 561 QRQCE 565 (835)
Q Consensus 561 qRqce 565 (835)
.+++|
T Consensus 134 k~~aE 138 (139)
T cd07817 134 KQLVE 138 (139)
T ss_pred HHHhh
Confidence 55544
No 103
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.99 E-value=3.5 Score=33.37 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=29.6
Q ss_pred HHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHHHHhhh
Q 003261 192 LERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 259 (835)
Q Consensus 192 ~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~ 259 (835)
|-+.+...|++.++.|++++.+|. .||..|+.|+.++...
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~----------------------------~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLK----------------------------KENEKLRAEVQELKEK 41 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHh
Confidence 346677888888888888876555 4788888888776654
No 104
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=79.77 E-value=6.1 Score=35.65 Aligned_cols=61 Identities=30% Similarity=0.444 Sum_probs=44.6
Q ss_pred HHHHHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHH----HHhhhhhhc
Q 003261 189 KTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGKF 263 (835)
Q Consensus 189 Kkk~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~----r~~~~~~~~ 263 (835)
|-++.-..-..|+-+.+.|+.+|..+.+..... ......|..||..||+|.. |++++.+|+
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~--------------~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA--------------QHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555666788999999999999988876521 2234569999999999974 677766553
No 105
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=79.71 E-value=51 Score=30.43 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=27.6
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEee
Q 003261 401 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVIS 439 (835)
Q Consensus 401 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis 439 (835)
+..|...+.++-++|.|...|.+-+|.+ ..+++++
T Consensus 7 ~~~v~a~~e~V~~~l~d~~~~~~w~~~~----~~~~~~~ 41 (139)
T PF10604_consen 7 SIEVPAPPEAVWDLLSDPENWPRWWPGV----KSVELLS 41 (139)
T ss_dssp EEEESS-HHHHHHHHTTTTGGGGTSTTE----EEEEEEE
T ss_pred EEEECCCHHHHHHHHhChhhhhhhhhce----EEEEEcc
Confidence 4467789999999999999999988874 4566666
No 106
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=77.51 E-value=4.8 Score=42.41 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=42.6
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhc
Q 003261 610 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILS 677 (835)
Q Consensus 610 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls 677 (835)
...+|..- .. .+||.|..+++...+|.- - .+---++.-|+.|+||+.+..+|.+||-..
T Consensus 21 ~~~~Wkl~-k~--~~~~~v~~k~~~ef~gkl----~--R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v 79 (202)
T cd08902 21 LEEEWRVA-KK--SKDVTVWRKPSEEFGGYL----Y--KAQGVVEDVYNRIVDHIRPGPYRLDWDSLM 79 (202)
T ss_pred cccCcEEE-Ee--CCCEEEEEecCCcCCCce----E--EEEEEecCCHHHHHHHHhcccchhcccchh
Confidence 66799966 43 389999999885545532 1 111112788899999999999999999744
No 107
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=75.03 E-value=8.1 Score=34.33 Aligned_cols=50 Identities=34% Similarity=0.547 Sum_probs=36.2
Q ss_pred HHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHH----HHhhhhhh
Q 003261 192 LERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGK 262 (835)
Q Consensus 192 ~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~----r~~~~~~~ 262 (835)
+.-.....|+.+++.|+.+|..+.+ +...|+.||.+|++|.. |+.++.+|
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~---------------------e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKE---------------------ENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566788888888888888875 44578899999998875 55555554
No 108
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=73.45 E-value=2 Score=35.62 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=33.8
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchh
Q 003261 134 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNR 184 (835)
Q Consensus 134 rr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNR 184 (835)
||+|..+|.+|...+-..++... ...+||+++|++..+|..|..||
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k 46 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNK 46 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhH
Confidence 45677899888887777787766 57789999999999999998774
No 109
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=72.16 E-value=39 Score=31.21 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=34.8
Q ss_pred ceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003261 512 CVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 565 (835)
Q Consensus 512 clIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqce 565 (835)
+.+.+.+.|.|+|+|.+... .....++..++...+.-+-++|++.|.++||
T Consensus 91 ~~~~~~~~~~T~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 91 FELEPLGDGGTRFVHRETFS---GLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred EEEEEcCCCcEEEEEeeEEE---EEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 34677767889999864322 1122345666777777788888999988886
No 110
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=71.72 E-value=12 Score=40.22 Aligned_cols=97 Identities=14% Similarity=0.331 Sum_probs=60.4
Q ss_pred cCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEE-EEEEeeecc-cChhHHHHhhhccccchhhhhhcCCCCccee
Q 003261 608 ASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVL-SAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEM 685 (835)
Q Consensus 608 ~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl-~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~ls~G~~vqe~ 685 (835)
+-..++|... .. .++|+|-.|...+ . |+++ .-++..-++ ++++.++++|.|...|.+||.-... +..+
T Consensus 22 ~~~~~~W~l~-~~--~~gikVy~r~~~~-s----g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~--~~vi 91 (235)
T cd08872 22 DVGADGWQLF-AE--EGEMKVYRREVEE-D----GVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLEN--FHVV 91 (235)
T ss_pred cCCCCCCEEE-Ee--CCceEEEEEECCC-C----CceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhhe--eEEE
Confidence 4455689977 32 5789999987632 2 2332 367777789 9999999999999999999974321 2333
Q ss_pred eecccCCCCCceEEEEEeccc-CCCCCceEEEEc
Q 003261 686 AHIAKGQDHGNCVSLLRASAI-NANQSSMLILQE 718 (835)
Q Consensus 686 ~~ia~g~~~gn~vsllr~~~~-~~~~~~~liLQe 718 (835)
-+| ++.+.|--...+.. -.++.++.++.-
T Consensus 92 e~l----~~~~~I~Y~~~k~PwPvs~RD~V~~~~ 121 (235)
T cd08872 92 ETL----SQDTLIFHQTHKRVWPAAQRDALFVSH 121 (235)
T ss_pred Eec----CCCCEEEEEEccCCCCCCCcEEEEEEE
Confidence 333 23333333322221 124567766654
No 111
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=71.60 E-value=70 Score=29.38 Aligned_cols=136 Identities=13% Similarity=0.080 Sum_probs=70.5
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecC
Q 003261 401 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 480 (835)
Q Consensus 401 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~ 480 (835)
+..|...+.++-++|-|.++|.+-.|.+ ..+++++.+.. ..|+.-.+...+ - +.+--...|++.--.+
T Consensus 4 ~~~i~ap~~~Vw~~l~d~~~~~~w~~~~----~~~~~~~~~~~--~~g~~~~~~~~~---~---g~~~~~~~~v~~~~p~ 71 (140)
T cd08865 4 SIVIERPVEEVFAYLADFENAPEWDPGV----VEVEKITDGPV--GVGTRYHQVRKF---L---GRRIELTYEITEYEPG 71 (140)
T ss_pred EEEEcCCHHHHHHHHHCccchhhhccCc----eEEEEcCCCCC--cCccEEEEEEEe---c---CceEEEEEEEEEecCC
Confidence 4456678899999999999999999985 45676654432 234432222221 0 1111122344432222
Q ss_pred CeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHH
Q 003261 481 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATL 560 (835)
Q Consensus 481 g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatL 560 (835)
..+. ... .. +.. . +.. =.-+++.++| |+|+|-.+++. ..+-.++.+++...+.=+-++++..|
T Consensus 72 ~~~~-~~~-~~----~~~-~-~~~------~~~~~~~~~~-t~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l 134 (140)
T cd08865 72 RRVV-FRG-SS----GPF-P-YED------TYTFEPVGGG-TRVRYTAELEP--GGFARLLDPLMAPAFRRRARAALENL 134 (140)
T ss_pred cEEE-EEe-cC----CCc-c-eEE------EEEEEEcCCc-eEEEEEEEEcc--chhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 2221 111 11 110 0 111 1335677665 99999998876 33334555555444444455666666
Q ss_pred HHHHH
Q 003261 561 QRQCE 565 (835)
Q Consensus 561 qRqce 565 (835)
.+.+|
T Consensus 135 k~~~e 139 (140)
T cd08865 135 KALLE 139 (140)
T ss_pred HHHhh
Confidence 55544
No 112
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=71.30 E-value=5.3 Score=44.02 Aligned_cols=41 Identities=34% Similarity=0.439 Sum_probs=26.2
Q ss_pred hhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHH
Q 003261 197 NSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 254 (835)
Q Consensus 197 ~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~ 254 (835)
...+++||++|+.|+..+++++. ...+.|+.||++||+.|.
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~-----------------~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLE-----------------ILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhc
Confidence 34567777777777777655443 122337788888888663
No 113
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.59 E-value=14 Score=32.71 Aligned_cols=60 Identities=32% Similarity=0.445 Sum_probs=39.4
Q ss_pred HHHHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHH----HHHhhhhhhc
Q 003261 190 TQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL----DRVCALAGKF 263 (835)
Q Consensus 190 kk~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el----~r~~~~~~~~ 263 (835)
-++.-..-..++-+.+.|+.+|..+.....+ ..-....|..||..||+|- +|++++++|+
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~q~--------------~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQN--------------AQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344445566777888888888777665431 1123346889999999986 4777776653
No 114
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=66.25 E-value=57 Score=31.13 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=23.4
Q ss_pred ceeEEEechhhHHHHhcChhhhhhhcccc
Q 003261 400 ETGMVIINSLALVETLMDPNRWAEMFPCM 428 (835)
Q Consensus 400 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~i 428 (835)
.+.+|...+..+-+++-|...|-+-.|-.
T Consensus 6 ~s~~I~ap~e~V~~~i~D~~~~~~W~p~~ 34 (150)
T cd07818 6 RSIVINAPPEEVFPYVNDLKNWPEWSPWE 34 (150)
T ss_pred EEEEEeCCHHHHHHHHhCcccCcccCchh
Confidence 34568889999999999999998876643
No 115
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=64.73 E-value=8.7 Score=41.69 Aligned_cols=40 Identities=35% Similarity=0.516 Sum_probs=24.5
Q ss_pred hhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHH
Q 003261 196 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 253 (835)
Q Consensus 196 e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el 253 (835)
....+++||++|++|+..++..+. +.+.|+.||.+||+.|
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~------------------~~~~l~~en~~L~~lL 109 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQ------------------ELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHh
Confidence 344566666666666666665443 3345677777777755
No 116
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=62.49 E-value=16 Score=43.35 Aligned_cols=20 Identities=45% Similarity=0.685 Sum_probs=15.3
Q ss_pred hhhHHHHhhHhhHHHHHHHh
Q 003261 238 EEQHLRIENARLKDELDRVC 257 (835)
Q Consensus 238 ~~q~L~~ENa~Lk~el~r~~ 257 (835)
|.++|+.||+.||++|+.+.
T Consensus 317 Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 317 ENEQLKKENATLKRQLDELV 336 (655)
T ss_pred HHHHHHhhhHHHHHHHHHHh
Confidence 66778888888888886543
No 117
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=61.65 E-value=28 Score=42.95 Aligned_cols=157 Identities=18% Similarity=0.239 Sum_probs=83.3
Q ss_pred CCCCCceeccCCCCCCceEEEEecC-CCCCCCCCceEEEEEEeeecccChhHHHHhhhccc-cchhhhhhcC-CCCccee
Q 003261 609 STVHKWNKLNAGNVDEDVRVMTRKS-VDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDER-LRSEWDILSN-GGPMQEM 685 (835)
Q Consensus 609 s~~~~W~~l~~~~~~~dVrv~~r~~-~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrde~-~R~eWd~ls~-G~~vqe~ 685 (835)
+....|.-+..- .++||+-.-. .+.-+...+-++ ++-=-++.+|+.||++|-+.. .|.|||.... |.-++++
T Consensus 195 ~~~~~Wr~~~c~---NGlRiF~e~~~~~~~~~~~~~~m--KavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~I 269 (719)
T PLN00188 195 FSRKHWRLLQCQ---NGLRIFEELLEVDYLPRSCSRAM--KAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEV 269 (719)
T ss_pred cccCCeEEEEee---ccceeehhhhccccccccCCcee--EEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEe
Confidence 555667665222 3567664432 121111122222 233346789999999997444 9999998533 3333333
Q ss_pred eecccCCCCCceEEEEEeccc----CCCCCceEEEEccccCCCCcEEE-EeecchhhhhhhhcCCCCCCc--cccCCccE
Q 003261 686 AHIAKGQDHGNCVSLLRASAI----NANQSSMLILQETCTDAAGSLVV-YAPVDIPAMHVVMNGGDSAYV--ALLPSGFA 758 (835)
Q Consensus 686 ~~ia~g~~~gn~vsllr~~~~----~~~~~~~liLQes~td~sgs~vV-yAPvD~~~m~~vm~G~D~~~v--~LLPSGF~ 758 (835)
+...+|.-.++... --...+..++.--.-+.-|+|++ |-.|.-+.- .--+.+| -+-|+||.
T Consensus 270 -------D~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~c-----PP~kG~VRg~~~pGGwi 337 (719)
T PLN00188 270 -------DGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENC-----GPQPGFVRAHLESGGFN 337 (719)
T ss_pred -------cCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCCC-----CCCCCeEEEEEeCCEEE
Confidence 44445553343211 12335666666533356677766 445554331 0002222 37799999
Q ss_pred EcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeeccc
Q 003261 759 IVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVN 801 (835)
Q Consensus 759 I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~ 801 (835)
|.|--... ...+|+||--+|+=..
T Consensus 338 IsPL~~~~-------------------g~~r~lv~~~lqtDlk 361 (719)
T PLN00188 338 ISPLKPRN-------------------GRPRTQVQHLMQIDLK 361 (719)
T ss_pred EEECCCCC-------------------CCCceEEEEEEEEccC
Confidence 99932210 1146888888887543
No 118
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=60.15 E-value=18 Score=33.34 Aligned_cols=47 Identities=30% Similarity=0.482 Sum_probs=35.0
Q ss_pred HHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHHHHhhhh
Q 003261 199 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 260 (835)
Q Consensus 199 ~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~~ 260 (835)
.+.++++.|+.|.+-|++.+. ..++.-+...||.+|++|+.|+..+-
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve---------------~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVE---------------HNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHH---------------hCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777664 24566678899999999999988653
No 119
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.50 E-value=31 Score=43.33 Aligned_cols=55 Identities=29% Similarity=0.378 Sum_probs=39.8
Q ss_pred HHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHHHHhhhh
Q 003261 200 LRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 260 (835)
Q Consensus 200 l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~~ 260 (835)
++..++.|..+-.-|+++|.+. |..+.+..+.+-.||.++|+|||+-|-|++.+.
T Consensus 337 lkEr~deletdlEILKaEmeek------G~~~~~~ss~qfkqlEqqN~rLKdalVrLRDls 391 (1243)
T KOG0971|consen 337 LKERVDELETDLEILKAEMEEK------GSDGQAASSYQFKQLEQQNARLKDALVRLRDLS 391 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc------CCCCcccchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444555666666678888765 333334457899999999999999999887664
No 120
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=52.90 E-value=1.1e+02 Score=36.21 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=57.1
Q ss_pred CCCCCHHHHHHHHHh-hhc-CCCCCHHHHHHHHHhhcccceeEEeecchhhHH-HHHHHHHHhhhHHHHHhHHHHHhhHh
Q 003261 137 YHRHTPQQIQELESL-FKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ-MKTQLERHENSLLRQENDKLRAENMS 213 (835)
Q Consensus 137 Rtr~T~~Ql~~LE~~-F~~-~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK-~Kkk~~r~e~~~l~~en~~L~~en~~ 213 (835)
--++|.+....|.+. |.. ..+|--+.-+++-++.... .+|+|.+ ++|++++.--..+......-.+||++
T Consensus 218 ~L~LteeEkrLL~kEG~slPs~lPLTKaEEriLKrvRRK-------IrNK~SAQESRrkKkeYid~LE~rv~~~taeNqe 290 (472)
T KOG0709|consen 218 PLVLTEEEKRLLTKEGYSLPSKLPLTKAEERILKRVRRK-------IRNKRSAQESRRKKKEYIDGLESRVSAFTAENQE 290 (472)
T ss_pred ceeccHHHHHHHHhccCcCcccCCchHHHHHHHHHHHHH-------HHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHH
Confidence 446788888888764 322 3467666666666665211 1243322 22222222223344444555566666
Q ss_pred HHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHHHHhhhhh
Q 003261 214 IRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAG 261 (835)
Q Consensus 214 l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~~~ 261 (835)
|++ +.++|..+|..|-++|.++.++..
T Consensus 291 L~k---------------------kV~~Le~~N~sLl~qL~klQt~v~ 317 (472)
T KOG0709|consen 291 LQK---------------------KVEELELSNRSLLAQLKKLQTLVI 317 (472)
T ss_pred HHH---------------------HHHHHhhccHHHHHHHHHHHHHHh
Confidence 665 566888999999999988876643
No 121
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=49.82 E-value=15 Score=37.65 Aligned_cols=20 Identities=50% Similarity=0.625 Sum_probs=6.3
Q ss_pred hhhHHHHhhHhhHHHHHHHh
Q 003261 238 EEQHLRIENARLKDELDRVC 257 (835)
Q Consensus 238 ~~q~L~~ENa~Lk~el~r~~ 257 (835)
|+..|++|++|||||+..+.
T Consensus 25 EKE~L~~~~QRLkDE~RDLK 44 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDLK 44 (166)
T ss_dssp HHHHHHHCH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55567778888887776544
No 122
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=49.42 E-value=20 Score=46.60 Aligned_cols=94 Identities=19% Similarity=0.169 Sum_probs=68.2
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHHHhhhHHHHHhHHHHHhhHh
Q 003261 134 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMS 213 (835)
Q Consensus 134 rr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~ 213 (835)
+-.+++++.-|...|..+|+...||.-.++..++.-|++..|.+-.|||++++++.+...+.. +-..
T Consensus 445 ~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~a-------------rg~~ 511 (1406)
T KOG1146|consen 445 LLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLA-------------RGEV 511 (1406)
T ss_pred hhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhcccccccc-------------cccc
Confidence 445678899999999999999999999999999999999999999999998888875443321 1112
Q ss_pred HHhhhcCCCCCCCCCCCcc-CCCChhhh
Q 003261 214 IRDAMRNPICTNCGGPAII-GDISLEEQ 240 (835)
Q Consensus 214 l~ea~~~~~C~~Cggp~~~-~~~~~~~q 240 (835)
.+.--...-|-.|-..+.. +.++-..|
T Consensus 512 ~~~~~~p~~C~~C~~stttng~Lsihlq 539 (1406)
T KOG1146|consen 512 YRCPGKPYPCRACNYSTTTNGNLSIHLQ 539 (1406)
T ss_pred ccCCCCcccceeeeeeeecchHHHHHHH
Confidence 2222233458888877654 44443333
No 123
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=48.34 E-value=2.1 Score=36.92 Aligned_cols=43 Identities=9% Similarity=0.191 Sum_probs=26.9
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeec
Q 003261 135 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWF 181 (835)
Q Consensus 135 r~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWF 181 (835)
++|++||+++...+-..+. .......++|+++|+++.++..|-
T Consensus 2 ~~r~~ys~e~K~~~v~~~~----~~g~sv~~va~~~gi~~~~l~~W~ 44 (76)
T PF01527_consen 2 RKRRRYSPEFKLQAVREYL----ESGESVSEVAREYGISPSTLYNWR 44 (76)
T ss_dssp -SS----HHHHHHHHHHHH----HHHCHHHHHHHHHTS-HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH----HCCCceEeeecccccccccccHHH
Confidence 3456799888777665551 123567889999999999988883
No 124
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=47.46 E-value=28 Score=41.07 Aligned_cols=55 Identities=29% Similarity=0.387 Sum_probs=25.9
Q ss_pred HHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHHHHhhhh
Q 003261 193 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 260 (835)
Q Consensus 193 ~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~~ 260 (835)
-..+|..+++||++|+.....+.+.+.+.. .-+.++|..|-..|++|..++....
T Consensus 78 l~~~N~~l~~eN~~L~~r~~~id~~i~~av-------------~~~~~~~~~~~~ql~~~~~~~~~~l 132 (472)
T TIGR03752 78 LISENEALKAENERLQKREQSIDQQIQQAV-------------QSETQELTKEIEQLKSERQQLQGLI 132 (472)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-------------HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554443333333211 1234455555566666655554443
No 125
>smart00338 BRLZ basic region leucin zipper.
Probab=47.40 E-value=58 Score=27.70 Aligned_cols=39 Identities=33% Similarity=0.487 Sum_probs=25.9
Q ss_pred HHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHH
Q 003261 194 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 253 (835)
Q Consensus 194 r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el 253 (835)
+..-..|..+...|..+|..|+..+ .+|..|+..|++++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~---------------------~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEI---------------------ERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHh
Confidence 3444556777777777777777633 35677777777765
No 126
>smart00340 HALZ homeobox associated leucin zipper.
Probab=45.16 E-value=20 Score=28.79 Aligned_cols=19 Identities=42% Similarity=0.546 Sum_probs=16.0
Q ss_pred HHHHhhHhhHHHHHHHhhh
Q 003261 241 HLRIENARLKDELDRVCAL 259 (835)
Q Consensus 241 ~L~~ENa~Lk~el~r~~~~ 259 (835)
.|..||.||+.|++.++++
T Consensus 16 ~LteeNrRL~ke~~eLral 34 (44)
T smart00340 16 SLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5777899999999988865
No 127
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=44.98 E-value=2.7e+02 Score=26.72 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=63.4
Q ss_pred EEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecCCe
Q 003261 403 MVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGV 482 (835)
Q Consensus 403 ~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~g~ 482 (835)
.+...+.++-+++.|.++|.+-.|. +..+++++.+.....+...+ +... ...|.+.-+..|+...-....
T Consensus 8 ~i~ap~e~Vw~~~tD~~~~~~w~~~----v~~~~~~~~~~~~~~g~~~~-~~~~-----~~~~~~~~~~~~v~~~~p~~~ 77 (146)
T cd07824 8 RIPAPPEAVWDVLVDAESWPDWWPG----VERVVELEPGDEAGIGARRR-YTWR-----GLLPYRLRFELRVTRIEPLSL 77 (146)
T ss_pred EecCCHHHHHHHHhChhhcchhhhc----eEEEEEccCCCCCCcceEEE-EEEE-----ecCCcEEEEEEEEEeecCCcE
Confidence 4556788999999999999999887 46677776322112122222 1111 112222223344444334445
Q ss_pred EEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccc---cccccchhhhcc
Q 003261 483 WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDES---QVHQLYKPLIIS 547 (835)
Q Consensus 483 waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~---~v~~lyrpl~~S 547 (835)
|++. . ++. . ....+ .-|++.++ +|+||+-.+++..-- ..+.|+.+++..
T Consensus 78 ~~~~-~--~g~---~--~~~~~-------~~~~~~~~-gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~ 129 (146)
T cd07824 78 LEVR-A--SGD---L--EGVGR-------WTLAPDGS-GTVVRYDWEVRTTKPWMNLLAPLARPVFRW 129 (146)
T ss_pred EEEE-E--EEe---e--eEEEE-------EEEEEcCC-CEEEEEEEEEEcCHHHHHhhhHhhhhHHHH
Confidence 5442 2 211 0 00111 23666555 499999888887542 355566665543
No 128
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=44.01 E-value=34 Score=32.63 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=14.1
Q ss_pred hhhHHHHhhHhhHHHHHHHhh
Q 003261 238 EEQHLRIENARLKDELDRVCA 258 (835)
Q Consensus 238 ~~q~L~~ENa~Lk~el~r~~~ 258 (835)
+..+|++||..||+.|.+...
T Consensus 37 EN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 37 ENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455677777777777766543
No 129
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=42.75 E-value=49 Score=36.61 Aligned_cols=42 Identities=31% Similarity=0.359 Sum_probs=24.8
Q ss_pred HHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHH
Q 003261 194 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 253 (835)
Q Consensus 194 r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el 253 (835)
-.+...+..+|+.|+.++.++.+... +.+.|+.||.+||+.|
T Consensus 65 ~~~~~~~~~en~~Lk~~l~~~~~~~~------------------~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 65 LKSLKDLALENEELKKELAELEQLLE------------------EVESLEEENKRLKELL 106 (284)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHh
Confidence 34445555666666666655554332 4556677777777755
No 130
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=42.57 E-value=30 Score=38.88 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=13.9
Q ss_pred hhhHHHHHhHHHHHhhHhHHhhh
Q 003261 196 ENSLLRQENDKLRAENMSIRDAM 218 (835)
Q Consensus 196 e~~~l~~en~~L~~en~~l~ea~ 218 (835)
|+..||+||++|+.||..|+...
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eV 55 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEV 55 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHH
Confidence 45556666666666666666533
No 131
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=41.89 E-value=57 Score=35.06 Aligned_cols=49 Identities=27% Similarity=0.442 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHHHH
Q 003261 187 QMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRV 256 (835)
Q Consensus 187 K~Kkk~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~ 256 (835)
|.|-+....++..|..+++.|.++...+++.++ +|+.||++|.+++.++
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk---------------------~le~E~s~LeE~~~~l 189 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLK---------------------RLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhc
Confidence 344445556666777777777777777666553 6888888888877654
No 132
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=41.36 E-value=25 Score=39.87 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=26.8
Q ss_pred HhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHH
Q 003261 195 HENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 254 (835)
Q Consensus 195 ~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~ 254 (835)
.....+++||++|+.||..|++.+. +.+.+..||++|++.+.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~------------------~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLK------------------SYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhhc
Confidence 3445666777777777777766553 34456678888776553
No 133
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=39.11 E-value=54 Score=31.54 Aligned_cols=19 Identities=37% Similarity=0.767 Sum_probs=14.4
Q ss_pred hhhHHHHhhHhhHHHHHHH
Q 003261 238 EEQHLRIENARLKDELDRV 256 (835)
Q Consensus 238 ~~q~L~~ENa~Lk~el~r~ 256 (835)
+..+|++||..||+.|+++
T Consensus 37 EN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 37 ENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5557888888888887765
No 134
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=38.69 E-value=1.1e+02 Score=25.91 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=14.5
Q ss_pred HHhhhHHHHHhHHHHHhhHhHHh
Q 003261 194 RHENSLLRQENDKLRAENMSIRD 216 (835)
Q Consensus 194 r~e~~~l~~en~~L~~en~~l~e 216 (835)
...-..|....+.|..+|..|+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777777777766665
No 135
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=38.45 E-value=16 Score=35.32 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.6
Q ss_pred EeeecccChhHHHHhhhccccchhhh
Q 003261 649 TSVWLPVSPQRLFNFLRDERLRSEWD 674 (835)
Q Consensus 649 tS~wLpv~p~~vf~FLrde~~R~eWd 674 (835)
-++.++.||++||+||.|.....+|.
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~ 28 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCL 28 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcC
Confidence 47889999999999999999999884
No 136
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=36.45 E-value=90 Score=36.50 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceeec
Q 003261 338 MFLELALAAMDELVKMAQTDEPLWIRS 364 (835)
Q Consensus 338 ~l~~lA~~Am~El~~la~~~eplWi~~ 364 (835)
.|++ |..||.|+....+..---|.+.
T Consensus 398 kIle-ak~al~evtt~lrErl~RWqQI 423 (575)
T KOG4403|consen 398 KILE-AKSALSEVTTLLRERLHRWQQI 423 (575)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 7789999988887777778774
No 137
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=36.44 E-value=48 Score=37.46 Aligned_cols=72 Identities=24% Similarity=0.340 Sum_probs=48.1
Q ss_pred ecchhhHHHHHHHHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHHHHhhh
Q 003261 180 WFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 259 (835)
Q Consensus 180 WFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~ 259 (835)
||=-=|.|+| +.+-...+.++....|+.+.++-+|+--. ...+...|.++|+..|.+|+.+|-++..+
T Consensus 54 wff~i~~re~-qlk~aa~~llq~kirk~~e~~eglr~i~e-----------s~~e~q~e~~qL~~qnqkL~nqL~~~~~v 121 (401)
T PF06785_consen 54 WFFAIGRREK-QLKTAAGQLLQTKIRKITEKDEGLRKIRE-----------SVEERQQESEQLQSQNQKLKNQLFHVREV 121 (401)
T ss_pred HHHHhhHHHH-HHHHHHHHHHHHHHHHHHhccHHHHHHHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 7754444444 34456677888888888877766554221 11234567778999999999999888877
Q ss_pred hhhc
Q 003261 260 AGKF 263 (835)
Q Consensus 260 ~~~~ 263 (835)
..|.
T Consensus 122 f~k~ 125 (401)
T PF06785_consen 122 FMKT 125 (401)
T ss_pred HHHh
Confidence 6554
No 138
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=35.76 E-value=3e+02 Score=24.11 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=26.9
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEee
Q 003261 401 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVIS 439 (835)
Q Consensus 401 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis 439 (835)
...|...+..+-+.|.|...|...+|.+ ...+++.
T Consensus 4 ~~~i~a~~~~v~~~l~d~~~~~~~~~~~----~~~~~~~ 38 (141)
T cd07812 4 SIEIPAPPEAVWDLLSDPERWPEWSPGL----ERVEVLG 38 (141)
T ss_pred EEEeCCCHHHHHHHHhChhhhhhhCccc----ceEEEcC
Confidence 4556667999999999999999988874 4444554
No 139
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=35.21 E-value=97 Score=27.35 Aligned_cols=45 Identities=33% Similarity=0.437 Sum_probs=25.3
Q ss_pred hHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHHHH
Q 003261 198 SLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRV 256 (835)
Q Consensus 198 ~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~ 256 (835)
.....+++.|+.|+......+. +...+..+|+.||..|++|++..
T Consensus 22 ~~~~~~~k~L~~ERd~~~~~l~--------------~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 22 SVHEIENKRLRRERDSAERQLG--------------DAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555666666555444332 12235567777777777777653
No 140
>PF15058 Speriolin_N: Speriolin N terminus
Probab=34.56 E-value=54 Score=34.43 Aligned_cols=38 Identities=37% Similarity=0.530 Sum_probs=27.4
Q ss_pred HHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHHHHhh
Q 003261 199 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 258 (835)
Q Consensus 199 ~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~ 258 (835)
-++.++++|-.||.+||+..+ |..||.+||.-|.+.+.
T Consensus 9 GlrhqierLv~ENeeLKKlVr----------------------LirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 9 GLRHQIERLVRENEELKKLVR----------------------LIRENHELKSALGEACA 46 (200)
T ss_pred HHHHHHHHHHhhhHHHHHHHH----------------------HHHHHHHHHHHHHHhhc
Confidence 356667777788888877553 77899999887766554
No 141
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=32.69 E-value=2.6e+02 Score=25.75 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHHHHhh
Q 003261 186 TQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 258 (835)
Q Consensus 186 aK~Kkk~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~ 258 (835)
.+.++..-+++...|+.....-..-+..|..++....++-+..| ..+....+.|..|=|.|..|+.++..
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~---~~lp~~~keLL~EIA~lE~eV~~LE~ 75 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSP---SSLPKKAKELLEEIALLEAEVAKLEQ 75 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCcc---ccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667778888888887777777888888877655543333 34566778888888888888776543
No 142
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=32.68 E-value=34 Score=31.84 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=26.4
Q ss_pred EEEeeecccChhHHHHhhhccccchhhhh
Q 003261 647 AATSVWLPVSPQRLFNFLRDERLRSEWDI 675 (835)
Q Consensus 647 A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 675 (835)
...|+.++.||..||++|.|.....+|.-
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~~~~~w~p 32 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVEAYPEWSP 32 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChhhhhhhCc
Confidence 45789999999999999999999999985
No 143
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=32.23 E-value=43 Score=30.94 Aligned_cols=28 Identities=21% Similarity=0.480 Sum_probs=23.7
Q ss_pred EEeeecccChhHHHHhhhccccchhhhh
Q 003261 648 ATSVWLPVSPQRLFNFLRDERLRSEWDI 675 (835)
Q Consensus 648 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 675 (835)
..++-++.||+.||++|.|.....+|.-
T Consensus 5 ~~~~~v~a~~e~V~~~l~d~~~~~~w~~ 32 (139)
T PF10604_consen 5 EVSIEVPAPPEAVWDLLSDPENWPRWWP 32 (139)
T ss_dssp EEEEEESS-HHHHHHHHTTTTGGGGTST
T ss_pred EEEEEECCCHHHHHHHHhChhhhhhhhh
Confidence 4577889999999999999999999964
No 144
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=32.17 E-value=28 Score=32.03 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=24.8
Q ss_pred EEeeecccChhHHHHhhhccccchhhhh
Q 003261 648 ATSVWLPVSPQRLFNFLRDERLRSEWDI 675 (835)
Q Consensus 648 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 675 (835)
..++-++.||..||++|.|-.+..+|..
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~~ 29 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWDP 29 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhcc
Confidence 3567789999999999999999999974
No 145
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=30.88 E-value=1.5e+02 Score=32.83 Aligned_cols=43 Identities=28% Similarity=0.340 Sum_probs=31.8
Q ss_pred HHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhh-hHHHHhhHhhHHHHHHHhhhh
Q 003261 200 LRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEE-QHLRIENARLKDELDRVCALA 260 (835)
Q Consensus 200 l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~-q~L~~ENa~Lk~el~r~~~~~ 260 (835)
.-.....+++||++|++++. +. +++......|++|.+|++.++
T Consensus 64 ~~~~~~~l~~EN~~Lr~e~~------------------~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 64 NLKDVNNLEYENYKLRQELL------------------KKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456778999999998774 22 455555666999999998875
No 146
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=30.35 E-value=38 Score=31.23 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=24.3
Q ss_pred EEeeecccChhHHHHhhhccccchhhh
Q 003261 648 ATSVWLPVSPQRLFNFLRDERLRSEWD 674 (835)
Q Consensus 648 ~tS~wLpv~p~~vf~FLrde~~R~eWd 674 (835)
..+.-+++||+.||++|.|..+..+|.
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~~~~~~w~ 30 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDFGGLHKWH 30 (140)
T ss_pred EEEEEECCCHHHHHHHHhCcCchhhhc
Confidence 356789999999999999999999996
No 147
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=29.73 E-value=29 Score=32.44 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=24.6
Q ss_pred EeeecccChhHHHHhhhccccchhhhh
Q 003261 649 TSVWLPVSPQRLFNFLRDERLRSEWDI 675 (835)
Q Consensus 649 tS~wLpv~p~~vf~FLrde~~R~eWd~ 675 (835)
.++-++.||++||+||.|.....+|..
T Consensus 5 ~~~~i~a~~e~v~~~l~D~~~~~~w~p 31 (144)
T cd05018 5 GEFRIPAPPEEVWAALNDPEVLARCIP 31 (144)
T ss_pred eEEEecCCHHHHHHHhcCHHHHHhhcc
Confidence 567789999999999999999999984
No 148
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=29.66 E-value=26 Score=37.45 Aligned_cols=182 Identities=16% Similarity=0.156 Sum_probs=91.4
Q ss_pred cCCCCCceeccCCCCCCceEEEE-ecCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhccccchhhhhhcCCCCccee
Q 003261 608 ASTVHKWNKLNAGNVDEDVRVMT-RKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEM 685 (835)
Q Consensus 608 ~s~~~~W~~l~~~~~~~dVrv~~-r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~ls~G~~vqe~ 685 (835)
+-.+.+|..+ -+ ..+++|.. |.- +.| | =.+.|- .-+. ++|..|+||+-|..-|.+||.+.--. ..+
T Consensus 25 ~~~~~~We~~-~~--k~~~~i~~q~~~--~~g-~-~~Yk~~---~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~--e~i 92 (219)
T KOG2761|consen 25 CDAGQGWELV-MD--KSTPSIWRQRRP--KTG-L-YEYKSR---TVFEDVTPEIVRDVQWDDEYRKKWDDMVIEL--ETI 92 (219)
T ss_pred cCcccchhhh-cc--cCCceEEEEccc--CCC-C-EEEEEE---EEEcCCCHHHHHHHHhhhHHHHHHHHHhhhh--eee
Confidence 5677899877 22 35677766 332 123 3 234333 3467 99999999999999999999842211 111
Q ss_pred eecccCCCCCceEEEEEec--ccCCCCCceEEEEccccCC--CCcEEEEeecchhhhhhhhcCCCCCCccccCCccEEcC
Q 003261 686 AHIAKGQDHGNCVSLLRAS--AINANQSSMLILQETCTDA--AGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVP 761 (835)
Q Consensus 686 ~~ia~g~~~gn~vsllr~~--~~~~~~~~~liLQes~td~--sgs~vVyAPvD~~~m~~vm~G~D~~~v~LLPSGF~I~P 761 (835)
... ...||- |++-. -.-+-.+--+|++-.+.+. -.-+++-=-|+-+++ ---.+.--|-++=||+.|=
T Consensus 93 e~d---~~tg~~--vv~w~~kfP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~---P~~~~~vRv~~~~s~~~I~- 163 (219)
T KOG2761|consen 93 EED---PVTGTE--VVYWVKKFPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSY---PPLKKKVRVTVYRSGWLIR- 163 (219)
T ss_pred eec---CCCCce--EEEEEEeCCcccCCccEEEEEEEEecCCceEEEEEecccCCCc---CCcCCcEEEEEEEEEEEEE-
Confidence 111 112332 23211 0001112234444333322 112222211222211 0000112334556777776
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh-HhhhhhHHHHHHHHHhc
Q 003261 762 DGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 832 (835)
Q Consensus 762 dg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t-v~~li~~tv~~Ik~Al~ 832 (835)
-+... ....||-.. ++.-.+|...|..+-|.= +...+-..|.++-.|+.
T Consensus 164 --~~~~~----------------~~~~~~~~~----~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~ 213 (219)
T KOG2761|consen 164 --VESRS----------------GDEQGCACE----YLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALL 213 (219)
T ss_pred --ccccc----------------CCCCccEEE----EEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHH
Confidence 11110 112344433 344457888887776654 88888889999988875
No 149
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=29.57 E-value=35 Score=32.29 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=25.7
Q ss_pred EEeeecccChhHHHHhhhccccchhhhh
Q 003261 648 ATSVWLPVSPQRLFNFLRDERLRSEWDI 675 (835)
Q Consensus 648 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 675 (835)
.+++.++.||.+||+.|.|-.+..+|.-
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p 29 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIP 29 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCc
Confidence 3689999999999999999999999974
No 150
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=29.04 E-value=1.8e+02 Score=25.66 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=24.8
Q ss_pred HHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHHHHhhhh
Q 003261 199 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 260 (835)
Q Consensus 199 ~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~~ 260 (835)
.+-+.++.|+.||..+++.. ..+..|++.|++..+-++.-.
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~---------------------~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQE---------------------KTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777777633 356667777777665544433
No 151
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=29.00 E-value=34 Score=32.73 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=25.5
Q ss_pred EEEeeecccChhHHHHhhhccccchhh
Q 003261 647 AATSVWLPVSPQRLFNFLRDERLRSEW 673 (835)
Q Consensus 647 A~tS~wLpv~p~~vf~FLrde~~R~eW 673 (835)
|.+++.++.||++||+.|-|+.+-.+|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W 28 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKF 28 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccc
Confidence 678999999999999999999999998
No 152
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=28.81 E-value=41 Score=31.32 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=25.5
Q ss_pred EEeeecccChhHHHHhhhccccchhhhh
Q 003261 648 ATSVWLPVSPQRLFNFLRDERLRSEWDI 675 (835)
Q Consensus 648 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 675 (835)
..++-++.||+.||++|.|.....+|.-
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~~~~w~~ 30 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFENLPRFMS 30 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhhhHHHhh
Confidence 4678889999999999999999999985
No 153
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.43 E-value=1.3e+02 Score=35.82 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=14.9
Q ss_pred HHHhhhHHHHHhHHHHHhhHhHHhhh
Q 003261 193 ERHENSLLRQENDKLRAENMSIRDAM 218 (835)
Q Consensus 193 ~r~e~~~l~~en~~L~~en~~l~ea~ 218 (835)
-|.+-..+.++|++|++||++|++..
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445556666666666666665544
No 154
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.17 E-value=1.5e+02 Score=35.32 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=37.3
Q ss_pred eecchhhHHHHHHHHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHHH
Q 003261 179 FWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDR 255 (835)
Q Consensus 179 vWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r 255 (835)
-=|-.+..+.+-.+.+.....+.+++++|+.|.+.+..... +..-..+.|..||.+|+++++.
T Consensus 60 ~~FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~--------------dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 60 TTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRG--------------DDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------------hHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555566667777888888777653333222 1112233677889999988843
No 155
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=26.79 E-value=46 Score=30.92 Aligned_cols=30 Identities=17% Similarity=0.408 Sum_probs=26.4
Q ss_pred EEEEeeecccChhHHHHhhhccccchhhhh
Q 003261 646 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 675 (835)
Q Consensus 646 ~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 675 (835)
+...++-++.||..||+++.|.....+|.-
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~ 31 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTP 31 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccC
Confidence 345688899999999999999999999984
No 156
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=26.75 E-value=39 Score=31.35 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=24.8
Q ss_pred EEeeecccChhHHHHhhhccccchhhhh
Q 003261 648 ATSVWLPVSPQRLFNFLRDERLRSEWDI 675 (835)
Q Consensus 648 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 675 (835)
..|+-++.||+.||++|.|..+-.+|.-
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~~~~w~~ 30 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPELLAQWFG 30 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHHHHhhhC
Confidence 3577889999999999999999999963
No 157
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=26.07 E-value=47 Score=31.38 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=23.5
Q ss_pred EeeecccChhHHHHhhhccccchhhh
Q 003261 649 TSVWLPVSPQRLFNFLRDERLRSEWD 674 (835)
Q Consensus 649 tS~wLpv~p~~vf~FLrde~~R~eWd 674 (835)
.+.-+..||++||++|.|..+..+|.
T Consensus 4 ~~~~i~ap~e~Vw~~l~d~~~~~~W~ 29 (144)
T cd07825 4 VSRTVDAPAEAVFAVLADPRRHPEID 29 (144)
T ss_pred EEEEEeCCHHHHHHHHhCccccceeC
Confidence 45667899999999999999999997
No 158
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=25.90 E-value=46 Score=29.49 Aligned_cols=27 Identities=26% Similarity=0.636 Sum_probs=23.8
Q ss_pred EeeecccChhHHHHhhhccccchhhhh
Q 003261 649 TSVWLPVSPQRLFNFLRDERLRSEWDI 675 (835)
Q Consensus 649 tS~wLpv~p~~vf~FLrde~~R~eWd~ 675 (835)
.++-++.||+.||++|.|..+..+|.-
T Consensus 3 ~~~~i~a~~~~v~~~l~d~~~~~~~~~ 29 (141)
T cd07812 3 ASIEIPAPPEAVWDLLSDPERWPEWSP 29 (141)
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhCc
Confidence 466788999999999999999999963
No 159
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=25.88 E-value=72 Score=26.76 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHhhhcCCC--CCHHHHHHHHHhhccccee
Q 003261 140 HTPQQIQELESLFKECPH--PDEKQRLELSKRLCLETRQ 176 (835)
Q Consensus 140 ~T~~Ql~~LE~~F~~~~y--Ps~~~R~eLA~~LgLs~rQ 176 (835)
+|+.|.+.|...|+..=| |-...-.+||++||+++.-
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st 39 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKST 39 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHH
Confidence 588999999999987654 7777788999999998743
No 160
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=25.58 E-value=1.5e+02 Score=32.68 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=12.9
Q ss_pred hHHHHhhHhhHHHHHHHhhhhh
Q 003261 240 QHLRIENARLKDELDRVCALAG 261 (835)
Q Consensus 240 q~L~~ENa~Lk~el~r~~~~~~ 261 (835)
+.|+.+...|++|+..++.+..
T Consensus 232 ~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 232 EALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666665543
No 161
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.09 E-value=90 Score=29.58 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=22.1
Q ss_pred eEEeecchhhHHHHHHHHHHhhhHHHHHhHHHHHhhHhHHhhh
Q 003261 176 QVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAM 218 (835)
Q Consensus 176 QVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~ea~ 218 (835)
+...||++.=- .+-.+.+++...+++++++++.+|+.|++.+
T Consensus 16 ~y~l~~g~~G~-~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 16 QYSLWFGKNGI-LDYWRVNDQVAAQQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred HHHHhccCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578865411 1111234445556677777777666666543
No 162
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=24.74 E-value=2.1e+02 Score=32.04 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=19.9
Q ss_pred HHHHHhhhHHHHHhHHHHHhhHhHHhhh
Q 003261 191 QLERHENSLLRQENDKLRAENMSIRDAM 218 (835)
Q Consensus 191 k~~r~e~~~l~~en~~L~~en~~l~ea~ 218 (835)
+++|.+...+-.+.+.|..+|.+||+..
T Consensus 244 qKkRae~E~l~ge~~~Le~rN~~LK~qa 271 (294)
T KOG4571|consen 244 QKKRAEKEALLGELEGLEKRNEELKDQA 271 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566677778888888888888733
No 163
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=24.22 E-value=1.8e+02 Score=29.24 Aligned_cols=56 Identities=23% Similarity=0.421 Sum_probs=29.8
Q ss_pred eEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecCCeEEEEEEeccCc
Q 003261 433 ATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTI 493 (835)
Q Consensus 433 ~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~g~waVvDvSld~~ 493 (835)
..++|++.-..+..+|.--.+.+++....- .|..=.|-|+. .+|.|-|+||.++++
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~V~t~i~~~~g-~~i~v~y~l~~----~~g~Wki~Dv~ieGv 140 (170)
T PF05494_consen 85 QSVEVLSEPPNGRKGGNRAIVRTEIISKDG-QPIPVDYRLRK----KDGKWKIYDVIIEGV 140 (170)
T ss_dssp -EEEE------S-TT-SEEEEEEEEEET-T-EEEEEEEEEEE----ETTEEEEEEEEETTE
T ss_pred CeEEEEeccCCCCCCCCEEEEEEEEEcCCC-CcEEEEEEEEE----cCCCeEEEEEEEcce
Confidence 455666544444334455566666666654 33333344443 889999999999976
No 164
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=24.05 E-value=1.4e+02 Score=28.51 Aligned_cols=32 Identities=19% Similarity=0.482 Sum_probs=27.2
Q ss_pred EEEeeecccChhHHHHhhhccccchhhhhhcC
Q 003261 647 AATSVWLPVSPQRLFNFLRDERLRSEWDILSN 678 (835)
Q Consensus 647 A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~ 678 (835)
...|+-++.||++||+++.|..+..+|.-...
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~ 35 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLKNWPEWSPWEK 35 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCcccCcccCchhh
Confidence 34677889999999999999999999986443
No 165
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=23.66 E-value=87 Score=37.55 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=17.6
Q ss_pred hHHHHHhHHHHHhhHhHHhhhc
Q 003261 198 SLLRQENDKLRAENMSIRDAMR 219 (835)
Q Consensus 198 ~~l~~en~~L~~en~~l~ea~~ 219 (835)
+.+-+||+.|++||..||+.+.
T Consensus 312 q~ll~Ene~Lk~ENatLk~qL~ 333 (655)
T KOG4343|consen 312 QALLSENEQLKKENATLKRQLD 333 (655)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH
Confidence 4567788889999988888775
No 166
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=22.83 E-value=65 Score=32.27 Aligned_cols=46 Identities=17% Similarity=0.082 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHH
Q 003261 138 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 189 (835)
Q Consensus 138 tr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 189 (835)
..+|+.|.+.|+..++ . ....++|+.+|++...|+.|-++.+.+.|
T Consensus 5 ~~Lt~rqreVL~lr~~-G-----lTq~EIAe~LGiS~~tVs~ie~ra~kkLr 50 (141)
T PRK03975 5 SFLTERQIEVLRLRER-G-----LTQQEIADILGTSRANVSSIEKRARENIE 50 (141)
T ss_pred cCCCHHHHHHHHHHHc-C-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4689999999988432 2 34668999999999999988775555444
No 167
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=22.37 E-value=1.9e+02 Score=33.83 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=11.4
Q ss_pred HhhhHHHHHhHHHHHhhHhHHhhh
Q 003261 195 HENSLLRQENDKLRAENMSIRDAM 218 (835)
Q Consensus 195 ~e~~~l~~en~~L~~en~~l~ea~ 218 (835)
+....+.+++..+++|.+.++..+
T Consensus 27 k~~s~~~aq~~~~~a~~~ai~a~~ 50 (459)
T KOG0288|consen 27 KAQSRLSAQLVILRAESRAIKAKL 50 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555444433
No 168
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=22.07 E-value=43 Score=36.77 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=18.4
Q ss_pred hhhHHHHhhHhhHHHHHHHhhhhhhc
Q 003261 238 EEQHLRIENARLKDELDRVCALAGKF 263 (835)
Q Consensus 238 ~~q~L~~ENa~Lk~el~r~~~~~~~~ 263 (835)
....|..||+.|+.+++++.....++
T Consensus 223 r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 223 RVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467788888888888877665554
No 169
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=21.55 E-value=26 Score=26.76 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhh
Q 003261 139 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 185 (835)
Q Consensus 139 r~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRR 185 (835)
.+++.+...++..|... ..-.++|+.+|++...|+.|.+.-+
T Consensus 10 ~l~~~~~~~~~~~~~~~-----~~~~~ia~~~~~s~~~i~~~~~~~~ 51 (55)
T cd06171 10 KLPEREREVILLRFGEG-----LSYEEIAEILGISRSTVRQRLHRAL 51 (55)
T ss_pred hCCHHHHHHHHHHHhcC-----CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46788888888877422 2456789999999999988765433
No 170
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=21.32 E-value=4.1e+02 Score=24.48 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=55.5
Q ss_pred EechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecCCeEE
Q 003261 405 IINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWA 484 (835)
Q Consensus 405 ~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~g~wa 484 (835)
...+..+-+++.|.+.|.+.||.+ .-++||..... -|.+++.+.-...+ ..|+.|...+-.+.
T Consensus 2 ~ap~~~V~~~i~D~e~~~~~~p~~----~~v~vl~~~~~--------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--- 64 (130)
T PF03364_consen 2 NAPPEEVWSVITDYENYPRFFPPV----KEVRVLERDGD--------GMRARWEVKFGGIK--RSWTSRVTEDPPER--- 64 (130)
T ss_dssp SS-HHHHHHHHTTGGGHHHHCTTE----EEEEEEEEECC--------EEEEEEEECTTTTC--EEEEEEEEEECTTT---
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCC----ceEEEEEeCCC--------eEEEEEEEecCCEE--EEEEEEEEEEEeee---
Confidence 346778899999999999999995 55667764431 24445555444444 33444444433333
Q ss_pred EEEEeccCccCCCCCCCccceeecCCcceEeecC--CCccEEEEEEeeeeccc
Q 003261 485 VVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDES 535 (835)
Q Consensus 485 VvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~--nG~skVtwVeH~e~d~~ 535 (835)
|.+....+... .+...|+ +++.. +|++.+++.-.++++..
T Consensus 65 ~~~~~~~g~~~-----~~~g~W~------~~~~~~~~~g~~~~v~~~~~~~~~ 106 (130)
T PF03364_consen 65 IRFEQISGPFK-----SFEGSWR------FEPLGGNEGGTRTRVTYDYEVDPP 106 (130)
T ss_dssp EEEESSETTEE-----EEEEEEE------EEEETTECCEEEEEEEEEEEEETS
T ss_pred eeeeecCCCch-----hcEEEEE------EEECCCCcCCCEEEEEEEEEEecC
Confidence 33332222110 1122222 22333 35777777777777544
No 171
>KOG3755 consensus SATB1 matrix attachment region binding protein [Transcription]
Probab=21.04 E-value=21 Score=42.88 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHH-HHhhhcCCCCCHHHHHHHHHhhcc-------cceeEEeecchhhHHHHHHH
Q 003261 137 YHRHTPQQIQEL-ESLFKECPHPDEKQRLELSKRLCL-------ETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 137 Rtr~T~~Ql~~L-E~~F~~~~yPs~~~R~eLA~~LgL-------s~rQVkvWFQNRRaK~Kkk~ 192 (835)
+.+|-..|..++ +.+|-++++++.....+--+++.+ +.+-|++||.|||.++|+.+
T Consensus 695 ~~k~f~~~~~ev~~~w~~k~~s~s~~~v~eYkee~~~~~~~e~~~~kn~~~~fk~~~ee~~~~k 758 (769)
T KOG3755|consen 695 IIKFFQNQRYEVKHHWKLKTRSGSWVDVAEYKEEELLMPYEEKFESKNVQFWFKVRREEEKRLK 758 (769)
T ss_pred HHHhhhcceeecchhheecccCchhHHHHHhhHHhhcchhhhhhhhcchHHHHHHHHHHHhhhh
Confidence 333333343333 456777777877666665555433 45779999999999998754
No 172
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=20.81 E-value=74 Score=29.34 Aligned_cols=27 Identities=22% Similarity=0.494 Sum_probs=24.1
Q ss_pred EeeecccChhHHHHhhhccccchhhhh
Q 003261 649 TSVWLPVSPQRLFNFLRDERLRSEWDI 675 (835)
Q Consensus 649 tS~wLpv~p~~vf~FLrde~~R~eWd~ 675 (835)
.+.-++.||++||++|.|..+..+|.-
T Consensus 4 ~~~~i~ap~~~Vw~~~~d~~~~~~w~~ 30 (141)
T cd07822 4 TEIEINAPPEKVWEVLTDFPSYPEWNP 30 (141)
T ss_pred EEEEecCCHHHHHHHHhccccccccCh
Confidence 466788999999999999999999973
No 173
>PF07151 DUF1391: Protein of unknown function (DUF1391); InterPro: IPR009821 This family consists of several Enterobacterial proteins of around 50 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi where they are often known as YdfA. The function of this family is unknown.
Probab=20.24 E-value=49 Score=26.81 Aligned_cols=8 Identities=63% Similarity=1.282 Sum_probs=6.1
Q ss_pred HHHHHHHH
Q 003261 551 FGAQRWVA 558 (835)
Q Consensus 551 fGA~rWla 558 (835)
-||+|||+
T Consensus 38 ~garrwl~ 45 (49)
T PF07151_consen 38 SGARRWLA 45 (49)
T ss_pred hhhhHHHh
Confidence 37889976
No 174
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.18 E-value=1.3e+02 Score=28.63 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=24.2
Q ss_pred ecchhhHHHHHHHHHHhhhHHHHHhHHHHHhhHhHHh
Q 003261 180 WFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRD 216 (835)
Q Consensus 180 WFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~e 216 (835)
|+..+..+.+....++++..++++|+.|+.|-+.++.
T Consensus 26 ~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 26 ILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4455555555566666777777777777777666664
Done!