Query 003261
Match_columns 835
No_of_seqs 422 out of 1733
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 19:04:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.8 1.4E-19 4.9E-24 185.9 19.0 201 336-567 21-229 (231)
2 3a01_A Homeodomain-containing 99.7 8.9E-18 3.1E-22 151.5 4.4 78 128-205 12-89 (93)
3 2dmt_A Homeobox protein BARH-l 99.7 2.6E-17 9E-22 144.2 4.5 63 130-192 14-76 (80)
4 2kt0_A Nanog, homeobox protein 99.7 1.5E-17 5.1E-22 146.7 2.8 64 129-192 18-81 (84)
5 2da3_A Alpha-fetoprotein enhan 99.7 2.2E-17 7.4E-22 144.2 3.3 63 130-192 14-76 (80)
6 1nk2_P Homeobox protein VND; h 99.6 6.6E-17 2.3E-21 140.7 5.0 66 130-195 6-71 (77)
7 2cue_A Paired box protein PAX6 99.6 8.9E-17 3E-21 140.8 5.3 65 131-195 5-69 (80)
8 2dmq_A LIM/homeobox protein LH 99.6 5.9E-17 2E-21 141.6 3.9 65 131-195 5-69 (80)
9 1wh5_A ZF-HD homeobox family p 99.6 4.8E-17 1.6E-21 143.0 2.3 61 130-190 14-78 (80)
10 2dms_A Homeobox protein OTX2; 99.6 5.7E-17 1.9E-21 142.0 2.3 64 131-194 5-68 (80)
11 2dmu_A Homeobox protein goosec 99.6 8.8E-17 3E-21 137.2 3.3 62 131-192 5-66 (70)
12 2e1o_A Homeobox protein PRH; D 99.6 1.4E-16 4.8E-21 136.1 4.2 61 132-192 6-66 (70)
13 2h1k_A IPF-1, pancreatic and d 99.6 9.5E-17 3.2E-21 134.4 3.0 61 132-192 2-62 (63)
14 1puf_A HOX-1.7, homeobox prote 99.6 2.7E-16 9.2E-21 136.8 5.9 64 131-194 11-74 (77)
15 1fjl_A Paired protein; DNA-bin 99.6 1.5E-16 5.1E-21 139.6 4.1 64 130-193 15-78 (81)
16 2vi6_A Homeobox protein nanog; 99.6 4.3E-17 1.5E-21 136.0 0.3 60 132-191 2-61 (62)
17 2da2_A Alpha-fetoprotein enhan 99.6 8.3E-17 2.8E-21 137.3 1.9 62 131-192 5-66 (70)
18 2cra_A Homeobox protein HOX-B1 99.6 8.7E-17 3E-21 137.4 2.1 62 131-192 5-66 (70)
19 1zq3_P PRD-4, homeotic bicoid 99.6 1.6E-16 5.3E-21 135.1 3.3 63 133-195 2-64 (68)
20 1wh7_A ZF-HD homeobox family p 99.6 8.8E-17 3E-21 141.4 1.8 60 130-190 14-78 (80)
21 2hdd_A Protein (engrailed home 99.6 1.5E-16 5E-21 132.4 2.4 58 133-190 3-60 (61)
22 2da1_A Alpha-fetoprotein enhan 99.6 1.9E-16 6.4E-21 135.1 2.8 62 131-192 5-66 (70)
23 1ig7_A Homeotic protein MSX-1; 99.6 2.5E-16 8.5E-21 129.4 3.4 57 134-190 1-57 (58)
24 2djn_A Homeobox protein DLX-5; 99.6 1.4E-16 4.7E-21 136.1 1.7 62 131-192 5-66 (70)
25 1ahd_P Antennapedia protein mu 99.6 1.7E-16 6E-21 134.9 2.3 61 133-193 2-62 (68)
26 1yz8_P Pituitary homeobox 2; D 99.6 1.2E-16 4.2E-21 135.7 1.2 63 132-194 2-64 (68)
27 1b8i_A Ultrabithorax, protein 99.6 2E-16 6.9E-21 139.0 1.6 62 131-192 18-79 (81)
28 2da4_A Hypothetical protein DK 99.6 2.5E-16 8.5E-21 137.9 2.2 62 131-192 6-71 (80)
29 1ftt_A TTF-1 HD, thyroid trans 99.6 3.2E-16 1.1E-20 133.2 2.7 61 133-193 2-62 (68)
30 1bw5_A ISL-1HD, insulin gene e 99.6 1.6E-16 5.4E-21 134.1 0.7 60 132-191 2-61 (66)
31 1jgg_A Segmentation protein EV 99.6 3.5E-16 1.2E-20 129.6 2.6 58 134-191 2-59 (60)
32 3nar_A ZHX1, zinc fingers and 99.6 3.2E-16 1.1E-20 142.0 2.5 65 131-195 23-87 (96)
33 2l7z_A Homeobox protein HOX-A1 99.6 4.6E-16 1.6E-20 134.1 3.3 62 131-192 5-66 (73)
34 2m0c_A Homeobox protein arista 99.6 3.8E-16 1.3E-20 134.5 2.0 63 130-192 6-68 (75)
35 2r5y_A Homeotic protein sex co 99.6 3.1E-16 1.1E-20 139.8 1.5 61 132-192 27-87 (88)
36 3rkq_A Homeobox protein NKX-2. 99.6 5.5E-16 1.9E-20 126.9 2.8 57 133-189 2-58 (58)
37 1akh_A Protein (mating-type pr 99.6 3.7E-16 1.3E-20 129.7 1.4 59 131-189 3-61 (61)
38 1uhs_A HOP, homeodomain only p 99.6 9.8E-16 3.4E-20 131.5 3.8 59 134-192 2-61 (72)
39 2da5_A Zinc fingers and homeob 99.6 4.9E-16 1.7E-20 134.7 1.8 60 135-194 9-68 (75)
40 2hi3_A Homeodomain-only protei 99.6 1.1E-15 3.6E-20 131.8 3.9 59 134-192 3-62 (73)
41 3a02_A Homeobox protein arista 99.6 5.4E-16 1.9E-20 128.5 1.9 57 136-192 2-58 (60)
42 3a03_A T-cell leukemia homeobo 99.6 8.2E-16 2.8E-20 125.9 2.7 54 138-191 2-55 (56)
43 2k40_A Homeobox expressed in E 99.6 4.3E-16 1.5E-20 131.8 1.0 60 134-193 2-61 (67)
44 1b72_A Protein (homeobox prote 99.6 9.4E-16 3.2E-20 139.1 2.9 62 132-193 33-94 (97)
45 2cuf_A FLJ21616 protein; homeo 99.6 1.7E-15 5.7E-20 136.9 4.5 64 131-194 5-83 (95)
46 1x2n_A Homeobox protein pknox1 99.5 1.2E-15 4.2E-20 131.1 2.9 63 131-193 5-70 (73)
47 2ecc_A Homeobox and leucine zi 99.5 1.1E-15 3.8E-20 133.1 2.5 57 137-193 7-63 (76)
48 2ly9_A Zinc fingers and homeob 99.5 1.4E-15 4.9E-20 130.9 1.9 61 133-193 6-66 (74)
49 2dn0_A Zinc fingers and homeob 99.5 1.1E-15 3.8E-20 132.6 0.7 60 134-193 9-68 (76)
50 2ecb_A Zinc fingers and homeob 99.5 1.5E-15 5E-20 136.3 1.1 55 139-193 17-71 (89)
51 1puf_B PRE-B-cell leukemia tra 99.5 2.7E-15 9.3E-20 129.0 2.6 61 134-194 2-65 (73)
52 2dmn_A Homeobox protein TGIF2L 99.5 3.3E-15 1.1E-19 132.0 3.1 64 131-194 5-71 (83)
53 1e3o_C Octamer-binding transcr 99.5 1.6E-15 5.4E-20 149.5 0.8 61 131-191 99-159 (160)
54 1b72_B Protein (PBX1); homeodo 99.5 4.4E-15 1.5E-19 131.8 3.3 61 134-194 2-65 (87)
55 2xsd_C POU domain, class 3, tr 99.5 2E-15 6.8E-20 149.5 0.4 64 130-193 96-159 (164)
56 2da6_A Hepatocyte nuclear fact 99.5 9.7E-15 3.3E-19 133.7 4.9 65 130-194 3-88 (102)
57 2dmp_A Zinc fingers and homeob 99.5 7E-15 2.4E-19 131.6 3.2 57 137-193 17-73 (89)
58 1k61_A Mating-type protein alp 99.5 5.6E-15 1.9E-19 122.3 2.3 55 136-190 1-58 (60)
59 1au7_A Protein PIT-1, GHF-1; c 99.5 3E-15 1E-19 145.6 0.5 62 130-191 84-145 (146)
60 2cqx_A LAG1 longevity assuranc 99.5 3.1E-15 1.1E-19 129.0 0.5 57 134-190 9-66 (72)
61 1du6_A PBX1, homeobox protein 99.5 3.3E-15 1.1E-19 125.2 0.5 58 133-190 3-63 (64)
62 1mnm_C Protein (MAT alpha-2 tr 99.5 1E-14 3.5E-19 129.7 3.0 58 132-189 26-86 (87)
63 1le8_B Mating-type protein alp 99.5 5.4E-15 1.8E-19 130.5 0.9 59 134-192 3-64 (83)
64 1wi3_A DNA-binding protein SAT 99.5 1.3E-14 4.4E-19 122.9 3.1 60 130-189 4-64 (71)
65 3d1n_I POU domain, class 6, tr 99.5 1.4E-14 4.6E-19 141.4 3.1 60 131-190 91-150 (151)
66 2l9r_A Homeobox protein NKX-3. 99.4 4.1E-15 1.4E-19 127.3 -1.2 56 139-194 10-65 (69)
67 3nau_A Zinc fingers and homeob 99.4 1.7E-14 5.8E-19 122.1 2.3 53 140-192 11-63 (66)
68 1lfb_A Liver transcription fac 99.4 7.4E-15 2.5E-19 134.2 -0.3 64 130-193 6-90 (99)
69 1x2m_A LAG1 longevity assuranc 99.4 1.3E-14 4.4E-19 122.5 -0.1 49 142-190 9-58 (64)
70 3l1p_A POU domain, class 5, tr 99.4 3.9E-14 1.3E-18 138.9 2.4 61 131-191 94-154 (155)
71 2e19_A Transcription factor 8; 99.4 3.4E-14 1.2E-18 119.8 0.6 52 139-190 9-60 (64)
72 2d5v_A Hepatocyte nuclear fact 99.4 5.7E-14 2E-18 138.6 0.6 63 130-192 94-156 (164)
73 3k2a_A Homeobox protein MEIS2; 99.3 1.6E-13 5.5E-18 116.5 0.9 58 139-196 4-64 (67)
74 1ic8_A Hepatocyte nuclear fact 99.2 6.6E-13 2.3E-17 134.7 -0.3 62 129-190 111-193 (194)
75 1em2_A MLN64 protein; beta bar 99.2 2.3E-10 7.8E-15 117.3 17.5 197 336-567 20-226 (229)
76 3p0l_A Steroidogenic acute reg 99.2 1.9E-10 6.5E-15 117.5 15.7 193 339-565 12-213 (221)
77 2pso_A STAR-related lipid tran 99.2 1.4E-10 5E-15 120.5 13.9 191 342-564 33-225 (237)
78 2lk2_A Homeobox protein TGIF1; 99.1 1.6E-11 5.4E-16 109.9 2.8 59 138-196 10-71 (89)
79 2h8r_A Hepatocyte nuclear fact 99.1 2.1E-11 7.3E-16 125.3 2.0 60 129-188 138-218 (221)
80 2da7_A Zinc finger homeobox pr 99.0 5.9E-11 2E-15 101.2 1.5 46 142-187 14-59 (71)
81 1ln1_A PC-TP, phosphatidylchol 99.0 5.3E-09 1.8E-13 105.4 15.0 152 396-567 52-210 (214)
82 1mh3_A Maltose binding-A1 home 98.9 1.1E-10 3.7E-15 128.0 -0.3 56 134-189 366-421 (421)
83 1jss_A Stard4, cholesterol-reg 98.9 1.2E-08 4E-13 104.7 14.7 190 339-565 26-222 (224)
84 3fo5_A Thioesterase, adipose a 98.7 5.4E-08 1.8E-12 102.8 12.3 128 399-540 91-222 (258)
85 3qsz_A STAR-related lipid tran 98.6 6.7E-07 2.3E-11 88.6 14.7 152 397-566 28-179 (189)
86 2nzz_A Penetratin conjugated G 98.3 2E-08 6.7E-13 75.8 -2.5 21 175-195 1-21 (37)
87 2e3n_A Lipid-transfer protein 98.3 3.4E-06 1.1E-10 87.8 12.9 200 339-567 24-247 (255)
88 2r55_A STAR-related lipid tran 97.4 0.0081 2.8E-07 61.1 18.4 198 586-832 19-227 (231)
89 3qsz_A STAR-related lipid tran 96.9 0.021 7.1E-07 56.1 15.7 171 612-832 3-178 (189)
90 1jss_A Stard4, cholesterol-reg 96.4 0.051 1.7E-06 55.2 14.8 191 591-832 26-222 (224)
91 3p0l_A Steroidogenic acute reg 96.3 0.13 4.6E-06 51.8 17.1 194 589-832 10-213 (221)
92 1ln1_A PC-TP, phosphatidylchol 96.1 0.12 4.1E-06 51.5 15.5 172 610-832 26-208 (214)
93 1em2_A MLN64 protein; beta bar 96.0 0.17 5.9E-06 51.2 16.6 196 589-832 21-224 (229)
94 2pso_A STAR-related lipid tran 95.9 0.15 5.1E-06 52.6 15.5 175 610-833 48-227 (237)
95 2d4r_A Hypothetical protein TT 95.6 0.12 4.2E-06 46.5 12.0 140 400-567 6-145 (147)
96 3fo5_A Thioesterase, adipose a 93.9 0.96 3.3E-05 47.5 15.0 181 553-763 10-202 (258)
97 3tl1_A WHIE ORF VI, polyketide 92.3 2.1 7.3E-05 41.3 13.7 142 399-569 6-149 (159)
98 3tfz_A Cyclase; helix-GRIP, BE 91.8 2.1 7.1E-05 41.3 13.0 145 399-569 8-162 (172)
99 1t17_A Conserved hypothetical 91.0 0.97 3.3E-05 42.1 9.4 141 399-567 5-145 (148)
100 3tvq_A Multifunctional cyclase 90.9 3.9 0.00013 39.9 14.0 145 399-570 6-150 (169)
101 2e3n_A Lipid-transfer protein 89.1 4.6 0.00016 41.4 13.5 173 591-801 28-217 (255)
102 3p9v_A Uncharacterized protein 84.5 14 0.00047 35.1 13.2 140 399-564 10-149 (161)
103 2ys9_A Homeobox and leucine zi 83.2 0.25 8.5E-06 42.2 0.2 40 143-182 16-55 (70)
104 2jn6_A Protein CGL2762, transp 80.1 0.29 1E-05 43.0 -0.5 42 138-182 4-45 (97)
105 2jee_A YIIU; FTSZ, septum, coi 77.3 3.6 0.00012 36.1 5.5 55 194-262 19-77 (81)
106 2pcs_A Conserved protein; stru 76.8 47 0.0016 30.7 14.8 118 401-545 8-127 (162)
107 1ci6_A Transcription factor AT 67.3 11 0.00037 31.3 5.9 41 193-254 21-61 (63)
108 2j5u_A MREC protein; bacterial 66.6 2 6.9E-05 44.9 1.8 16 238-253 44-59 (255)
109 2wt7_B Transcription factor MA 58.9 13 0.00046 33.2 5.3 67 171-258 17-83 (90)
110 1hjb_A Ccaat/enhancer binding 58.2 17 0.00057 32.3 5.8 29 185-216 29-57 (87)
111 1t2k_D Cyclic-AMP-dependent tr 55.8 29 0.00099 28.3 6.6 40 193-253 20-59 (61)
112 1jnm_A Proto-oncogene C-JUN; B 52.6 17 0.00059 29.8 4.7 39 194-253 21-59 (62)
113 3ra3_B P2F; coiled coil domain 47.3 11 0.00037 25.9 2.1 18 240-257 3-20 (28)
114 3p51_A Uncharacterized protein 43.6 91 0.0031 29.8 9.1 112 400-534 6-118 (160)
115 1gu4_A CAAT/enhancer binding p 41.7 39 0.0013 29.3 5.3 16 200-215 41-56 (78)
116 2qpv_A Uncharacterized protein 41.4 17 0.00058 35.0 3.4 30 646-675 28-57 (156)
117 2wt7_A Proto-oncogene protein 40.2 66 0.0023 26.4 6.4 26 193-218 21-46 (63)
118 1l8d_A DNA double-strand break 38.0 28 0.00095 31.3 4.1 12 220-231 47-58 (112)
119 2d4r_A Hypothetical protein TT 36.2 17 0.00056 32.1 2.3 29 647-675 4-32 (147)
120 1gd2_E Transcription factor PA 34.8 71 0.0024 27.1 5.8 13 244-256 50-62 (70)
121 2ns9_A Hypothetical protein AP 34.4 2.6E+02 0.0088 25.1 12.4 28 401-428 18-45 (157)
122 3a5t_A Transcription factor MA 33.8 4.7 0.00016 37.1 -1.7 66 171-257 27-92 (107)
123 3ggn_A Uncharacterized protein 33.0 2.9E+02 0.01 25.4 12.8 116 400-544 8-124 (155)
124 2le1_A Uncharacterized protein 32.5 1.8E+02 0.0062 26.4 9.0 128 399-565 5-142 (151)
125 2pcs_A Conserved protein; stru 32.1 18 0.0006 33.7 1.8 28 647-674 5-32 (162)
126 2ns9_A Hypothetical protein AP 31.3 20 0.00069 32.8 2.1 29 646-674 14-42 (157)
127 3he5_B Synzip2; heterodimeric 29.5 1.2E+02 0.0042 23.4 5.7 41 198-259 6-46 (52)
128 2elh_A CG11849-PA, LD40883P; s 28.8 18 0.00062 31.0 1.2 43 134-181 17-59 (87)
129 3s9g_A Protein hexim1; cyclin 28.2 64 0.0022 29.2 4.6 55 194-255 36-90 (104)
130 3ggn_A Uncharacterized protein 28.1 31 0.0011 32.2 2.8 30 646-675 5-34 (155)
131 3m48_A General control protein 27.7 48 0.0017 24.3 3.0 21 240-260 10-30 (33)
132 2leq_A Uncharacterized protein 26.9 38 0.0013 30.3 3.1 28 646-673 6-33 (146)
133 1t17_A Conserved hypothetical 26.7 29 0.00099 31.9 2.3 28 648-675 5-32 (148)
134 1hlv_A CENP-B, major centromer 26.6 28 0.00095 31.5 2.1 48 136-186 4-51 (131)
135 2glo_A Brinker CG9653-PA; prot 26.6 20 0.00067 28.5 0.9 44 138-182 4-47 (59)
136 3m91_A Proteasome-associated A 26.0 1.2E+02 0.004 24.3 5.3 38 199-257 13-50 (51)
137 3q6a_A Uncharacterized protein 24.8 41 0.0014 30.4 2.9 27 648-674 4-30 (135)
138 1x53_A Activator of 90 kDa hea 24.7 40 0.0014 30.9 2.9 28 647-674 13-40 (145)
139 1uii_A Geminin; human, DNA rep 24.0 1.1E+02 0.0038 26.9 5.2 21 241-261 57-77 (83)
140 2rgt_A Fusion of LIM/homeobox 23.9 2.9 0.0001 40.5 -5.4 30 132-161 135-164 (169)
141 3m9b_A Proteasome-associated A 23.4 61 0.0021 33.9 4.1 19 240-258 78-96 (251)
142 3f08_A Uncharacterized protein 23.0 3E+02 0.01 25.4 8.6 124 399-567 5-139 (146)
143 3hug_A RNA polymerase sigma fa 22.7 35 0.0012 29.2 1.9 48 139-191 37-84 (92)
144 1gd2_E Transcription factor PA 22.6 1.4E+02 0.0047 25.4 5.4 18 238-255 51-68 (70)
145 2j5u_A MREC protein; bacterial 21.9 48 0.0016 34.5 3.1 19 242-260 41-59 (255)
146 3tfz_A Cyclase; helix-GRIP, BE 21.8 52 0.0018 31.3 3.1 29 646-674 6-34 (172)
147 1jko_C HIN recombinase, DNA-in 21.0 19 0.00065 26.6 -0.2 42 140-186 6-47 (52)
148 1z94_A Conserved hypothetical 20.3 40 0.0014 30.3 1.8 26 649-674 7-32 (147)
149 1xn6_A Hypothetical protein BC 20.3 41 0.0014 30.6 1.9 28 647-674 10-37 (143)
150 3s9g_A Protein hexim1; cyclin 20.2 1.1E+02 0.0038 27.7 4.5 22 195-216 65-86 (104)
151 2yy0_A C-MYC-binding protein; 20.1 1.2E+02 0.0041 24.3 4.3 17 238-254 20-36 (53)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.83 E-value=1.4e-19 Score=185.94 Aligned_cols=201 Identities=16% Similarity=0.205 Sum_probs=157.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHh
Q 003261 336 RSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 415 (835)
Q Consensus 336 ~~~l~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~l 415 (835)
++.++++|++||+||+++++.. ..|....+.. +.+.|.+.. .+....+-|..++|.+.+.+|++.|
T Consensus 21 ~~~y~~~a~~~~~~~l~~~~~~-~~W~~~~~~~---------gv~v~~~~~----~~~~~~~~k~~~~v~~~~~~v~~~l 86 (231)
T 2r55_A 21 QSMAAQMSEAVAEKMLQYRRDT-AGWKICREGN---------GVSVSWRPS----VEFPGNLYRGEGIVYGTLEEVWDCV 86 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-SSCEEEECCS---------SEEEEEEEC----SSSSSEEEEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-CCCEEEEeCC---------CEEEEEEcc----CCCCCcEEEEEEEECCCHHHHHHHH
Confidence 7899999999999999999754 7898754321 233342221 1233578899999999999999999
Q ss_pred cC-----hhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeee-eecccccccccceeeEEeeeceecCCeEEEEEEe
Q 003261 416 MD-----PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHA-ELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVS 489 (835)
Q Consensus 416 mD-----~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~a-El~v~SPLvp~Re~~flRyckq~~~g~waVvDvS 489 (835)
|+ +.+|-+.|. .+++++.|+. .-.++|. ....++++|++|||.++||+++.++|.|+|+.+|
T Consensus 87 ~~~d~~~r~~Wd~~~~----~~~vle~i~~--------~~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~S 154 (231)
T 2r55_A 87 KPAVGGLRVKWDENVT----GFEIIQSITD--------TLCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATH 154 (231)
T ss_dssp CC--CCSHHHHCTTCS----EEEEEEECSS--------SEEEEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEE
T ss_pred HhhCcchhhhhccccc----eeEEEEEcCC--------CEEEEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEe
Confidence 77 889987744 5788887752 1234442 2234567999999999999999999999999999
Q ss_pred ccCccCCCCCCCccceeecCCcceEeecC--CCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 003261 490 IDTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 567 (835)
Q Consensus 490 ld~~~~~~~~~~~~~~~r~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqcerl 567 (835)
++.-. .|..+.++|++.+++||+||+++ +|.|+|||+.|++..-+ +| +.++++.++.+..+|++.|+++|+.+
T Consensus 155 v~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 155 VEHPL-CPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp CCCTT-SCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred ccCCC-CCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 98432 22223589999999999999998 78999999999998876 55 67899999999999999999999853
No 2
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.69 E-value=8.9e-18 Score=151.50 Aligned_cols=78 Identities=32% Similarity=0.420 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHHHhhhHHHHHhH
Q 003261 128 ADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQEND 205 (835)
Q Consensus 128 ~~~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~ 205 (835)
...+++||+|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++..+.+....++.+.
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~~~~ 89 (93)
T 3a01_A 12 RTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANR 89 (93)
T ss_dssp SCCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC----------
T ss_pred CCCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 344567888999999999999999999999999999999999999999999999999999999887776666655544
No 3
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.6e-17 Score=144.18 Aligned_cols=63 Identities=29% Similarity=0.384 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 130 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 130 ~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
.+++||.|+.||.+|+..||..|+.++||+..+|.+||.+|+|+++||++||||||+|+|+..
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 456678899999999999999999999999999999999999999999999999999999743
No 4
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-17 Score=146.74 Aligned_cols=64 Identities=30% Similarity=0.302 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 129 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 129 ~~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
..+++||.|+.||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+++
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3456788899999999999999999999999999999999999999999999999999999754
No 5
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.66 E-value=2.2e-17 Score=144.18 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 130 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 130 ~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
..++||.|++||.+|+..||..|..++||+..+|++||++|||+++||++||||||+|+|+++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 346788899999999999999999999999999999999999999999999999999999754
No 6
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.65 E-value=6.6e-17 Score=140.67 Aligned_cols=66 Identities=30% Similarity=0.385 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHHH
Q 003261 130 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 195 (835)
Q Consensus 130 ~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~ 195 (835)
.++++|.|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+++...
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 446677889999999999999999999999999999999999999999999999999999876543
No 7
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=8.9e-17 Score=140.83 Aligned_cols=65 Identities=25% Similarity=0.442 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 195 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~ 195 (835)
+++||.|++||.+|+..||..|+.++||+..+|.+||.+|+|+++||++||||||+|+|++++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 35677889999999999999999999999999999999999999999999999999999876543
No 8
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5.9e-17 Score=141.64 Aligned_cols=65 Identities=26% Similarity=0.479 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 195 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~ 195 (835)
.++||.|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++..+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999876543
No 9
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.63 E-value=4.8e-17 Score=143.01 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhc----CCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHH
Q 003261 130 NPPRKKRYHRHTPQQIQELESLFKE----CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 190 (835)
Q Consensus 130 ~~kkrr~Rtr~T~~Ql~~LE~~F~~----~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 190 (835)
.+++||+|+.||.+|+..||..|+. ++||+..+|++||.+|||+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3467788999999999999999999 999999999999999999999999999999999874
No 10
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=5.7e-17 Score=141.97 Aligned_cols=64 Identities=28% Similarity=0.496 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 194 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 194 (835)
+++||+|++||.+|+..||..|+.++||+..+|.+||.+++|+++||++||||||+|+|+++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 4667889999999999999999999999999999999999999999999999999999976543
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=8.8e-17 Score=137.24 Aligned_cols=62 Identities=29% Similarity=0.556 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
.+.||+|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 35677889999999999999999999999999999999999999999999999999999754
No 12
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=1.4e-16 Score=136.05 Aligned_cols=61 Identities=36% Similarity=0.425 Sum_probs=57.6
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 132 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 132 kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
+.+++|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 4567788999999999999999999999999999999999999999999999999999764
No 13
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.62 E-value=9.5e-17 Score=134.42 Aligned_cols=61 Identities=34% Similarity=0.444 Sum_probs=55.8
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 132 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 132 kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
++||.|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 3577889999999999999999999999999999999999999999999999999999753
No 14
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.62 E-value=2.7e-16 Score=136.82 Aligned_cols=64 Identities=36% Similarity=0.432 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 194 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 194 (835)
++.+++|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|+..+.
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 4567788999999999999999999999999999999999999999999999999999987654
No 15
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.62 E-value=1.5e-16 Score=139.65 Aligned_cols=64 Identities=30% Similarity=0.540 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHH
Q 003261 130 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 193 (835)
Q Consensus 130 ~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 193 (835)
.+++||.|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4566788999999999999999999999999999999999999999999999999999998653
No 16
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.61 E-value=4.3e-17 Score=136.00 Aligned_cols=60 Identities=32% Similarity=0.368 Sum_probs=52.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHH
Q 003261 132 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 191 (835)
Q Consensus 132 kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk 191 (835)
+++|.|+.||.+|+..||..|..++||+..+|.+||..+||+++||++||||||+|+|++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 457788999999999999999999999999999999999999999999999999999975
No 17
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.61 E-value=8.3e-17 Score=137.29 Aligned_cols=62 Identities=27% Similarity=0.430 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
+++|++|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 45678889999999999999999999999999999999999999999999999999999754
No 18
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=8.7e-17 Score=137.37 Aligned_cols=62 Identities=27% Similarity=0.416 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
++.||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 45677889999999999999999999999999999999999999999999999999999754
No 19
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.61 E-value=1.6e-16 Score=135.14 Aligned_cols=63 Identities=37% Similarity=0.520 Sum_probs=59.2
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHHH
Q 003261 133 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 195 (835)
Q Consensus 133 krr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~ 195 (835)
+||.|+.||.+|+..||..|..++||+..+|.+||..+||+++||++||||||+|+|++..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 467889999999999999999999999999999999999999999999999999999877654
No 20
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.61 E-value=8.8e-17 Score=141.42 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhc-----CCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHH
Q 003261 130 NPPRKKRYHRHTPQQIQELESLFKE-----CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 190 (835)
Q Consensus 130 ~~kkrr~Rtr~T~~Ql~~LE~~F~~-----~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 190 (835)
.+++||.|+.||.+|+..|| .|.+ ++||+..+|++||.+|+|+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45678889999999999999 7999 999999999999999999999999999999999874
No 21
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.60 E-value=1.5e-16 Score=132.37 Aligned_cols=58 Identities=31% Similarity=0.550 Sum_probs=53.0
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHH
Q 003261 133 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 190 (835)
Q Consensus 133 krr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 190 (835)
+||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4778899999999999999999999999999999999999999999999999999986
No 22
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-16 Score=135.08 Aligned_cols=62 Identities=24% Similarity=0.367 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
.++||+|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 45678899999999999999999999999999999999999999999999999999999754
No 23
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.60 E-value=2.5e-16 Score=129.45 Aligned_cols=57 Identities=37% Similarity=0.511 Sum_probs=54.9
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHH
Q 003261 134 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 190 (835)
Q Consensus 134 rr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 190 (835)
||+|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467889999999999999999999999999999999999999999999999999986
No 24
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-16 Score=136.11 Aligned_cols=62 Identities=29% Similarity=0.409 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
++.||+|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 45678889999999999999999999999999999999999999999999999999998643
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.60 E-value=1.7e-16 Score=134.93 Aligned_cols=61 Identities=36% Similarity=0.517 Sum_probs=57.7
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHH
Q 003261 133 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 193 (835)
Q Consensus 133 krr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 193 (835)
+||.|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4678899999999999999999999999999999999999999999999999999998654
No 26
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.59 E-value=1.2e-16 Score=135.71 Aligned_cols=63 Identities=30% Similarity=0.516 Sum_probs=59.1
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHH
Q 003261 132 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 194 (835)
Q Consensus 132 kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 194 (835)
++||.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++++.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 467888999999999999999999999999999999999999999999999999999986643
No 27
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.58 E-value=2e-16 Score=139.03 Aligned_cols=62 Identities=34% Similarity=0.549 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
+++||.|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||+.
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 35677889999999999999999999999999999999999999999999999999999754
No 28
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.5e-16 Score=137.90 Aligned_cols=62 Identities=11% Similarity=0.207 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcC----CCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKEC----PHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~----~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
+++||.|+.||.+|+..||..|+.+ +||+..+|++||.++||+++||++||||||+|+|+..
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 4567888999999999999999999 9999999999999999999999999999999999743
No 29
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.58 E-value=3.2e-16 Score=133.18 Aligned_cols=61 Identities=38% Similarity=0.510 Sum_probs=57.8
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHH
Q 003261 133 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 193 (835)
Q Consensus 133 krr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 193 (835)
+||.|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++.+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 5678899999999999999999999999999999999999999999999999999998654
No 30
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.58 E-value=1.6e-16 Score=134.14 Aligned_cols=60 Identities=23% Similarity=0.439 Sum_probs=57.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHH
Q 003261 132 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 191 (835)
Q Consensus 132 kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk 191 (835)
++||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 457788999999999999999999999999999999999999999999999999999864
No 31
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.58 E-value=3.5e-16 Score=129.62 Aligned_cols=58 Identities=33% Similarity=0.453 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHH
Q 003261 134 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 191 (835)
Q Consensus 134 rr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk 191 (835)
||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5678999999999999999999999999999999999999999999999999999974
No 32
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.58 E-value=3.2e-16 Score=142.02 Aligned_cols=65 Identities=22% Similarity=0.333 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 195 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~ 195 (835)
+..+|+|++||.+|+..||..|+.++||+..+|++||.++||+++||++||||||+|+|+++.+.
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~ 87 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKW 87 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccH
Confidence 34567789999999999999999999999999999999999999999999999999999865443
No 33
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.58 E-value=4.6e-16 Score=134.12 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
.+.||+|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 35677889999999999999999999999999999999999999999999999999999754
No 34
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.57 E-value=3.8e-16 Score=134.54 Aligned_cols=63 Identities=30% Similarity=0.514 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 130 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 130 ~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
.+++++.|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 345677899999999999999999999999999999999999999999999999999999754
No 35
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.57 E-value=3.1e-16 Score=139.77 Aligned_cols=61 Identities=34% Similarity=0.492 Sum_probs=55.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 132 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 132 kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
+.||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+++
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 5677889999999999999999999999999999999999999999999999999999753
No 36
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.57 E-value=5.5e-16 Score=126.88 Aligned_cols=57 Identities=39% Similarity=0.493 Sum_probs=54.3
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHH
Q 003261 133 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 189 (835)
Q Consensus 133 krr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 189 (835)
+||.|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 466789999999999999999999999999999999999999999999999999986
No 37
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.56 E-value=3.7e-16 Score=129.67 Aligned_cols=59 Identities=27% Similarity=0.418 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 189 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 189 (835)
.+++++|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45677889999999999999999999999999999999999999999999999999975
No 38
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.56 E-value=9.8e-16 Score=131.53 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHhhhc-CCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 134 KKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 134 rr~Rtr~T~~Ql~~LE~~F~~-~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
.++|++||.+|+..||..|+. ++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 456788999999999999996 99999999999999999999999999999999999855
No 39
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=4.9e-16 Score=134.69 Aligned_cols=60 Identities=25% Similarity=0.557 Sum_probs=55.3
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHH
Q 003261 135 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 194 (835)
Q Consensus 135 r~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 194 (835)
++|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++.+.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 345679999999999999999999999999999999999999999999999999986543
No 40
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.56 E-value=1.1e-15 Score=131.76 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHhhhc-CCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 134 KKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 134 rr~Rtr~T~~Ql~~LE~~F~~-~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
+++|++||.+|+..||..|+. ++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 567889999999999999994 99999999999999999999999999999999999865
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.56 E-value=5.4e-16 Score=128.50 Aligned_cols=57 Identities=33% Similarity=0.512 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 136 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 136 ~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
.|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 468899999999999999999999999999999999999999999999999999764
No 42
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.56 E-value=8.2e-16 Score=125.88 Aligned_cols=54 Identities=37% Similarity=0.493 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHH
Q 003261 138 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 191 (835)
Q Consensus 138 tr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk 191 (835)
+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999975
No 43
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.56 E-value=4.3e-16 Score=131.84 Aligned_cols=60 Identities=30% Similarity=0.511 Sum_probs=56.8
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHH
Q 003261 134 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 193 (835)
Q Consensus 134 rr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 193 (835)
||+|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 677899999999999999999999999999999999999999999999999999997543
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=9.4e-16 Score=139.08 Aligned_cols=62 Identities=32% Similarity=0.431 Sum_probs=55.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHH
Q 003261 132 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 193 (835)
Q Consensus 132 kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 193 (835)
+.+++|+.||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|++..
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 56778899999999999999999999999999999999999999999999999999998654
No 45
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=1.7e-15 Score=136.94 Aligned_cols=64 Identities=25% Similarity=0.405 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhc---------------ccceeEEeecchhhHHHHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------LETRQVKFWFQNRRTQMKTQLER 194 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~Lg---------------Ls~rQVkvWFQNRRaK~Kkk~~r 194 (835)
+++||.|+.||++|+..||..|+.++||+..+|++||.+|+ |++.||++||||||+|+|+++..
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 46688899999999999999999999999999999999999 99999999999999999987653
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=1.2e-15 Score=131.13 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 193 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 193 (835)
++.|++|++|+.+|+..||.+|.. ++||+..+|++||.++||+++||++||||||+|+|+...
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 456778889999999999999977 999999999999999999999999999999999997643
No 47
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=1.1e-15 Score=133.07 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=53.5
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHH
Q 003261 137 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 193 (835)
Q Consensus 137 Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 193 (835)
|.+||.+|+.+||+.|..++||+..+|++||+.+||+++||++||||||+|+|+.+.
T Consensus 7 r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 7 GKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 446999999999999999999999999999999999999999999999999997543
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.53 E-value=1.4e-15 Score=130.94 Aligned_cols=61 Identities=20% Similarity=0.323 Sum_probs=57.2
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHH
Q 003261 133 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 193 (835)
Q Consensus 133 krr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 193 (835)
.++.|+.||.+|+..||..|+.++||+..+|++||.++||+++||++||||||+|+|+++.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 4667889999999999999999999999999999999999999999999999999997553
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-15 Score=132.56 Aligned_cols=60 Identities=23% Similarity=0.382 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHH
Q 003261 134 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 193 (835)
Q Consensus 134 rr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 193 (835)
++.|++||.+|+..||..|+.++||+..+|++||+++||+++||++||||||+|+|++..
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 345788999999999999999999999999999999999999999999999999997543
No 50
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=1.5e-15 Score=136.25 Aligned_cols=55 Identities=18% Similarity=0.349 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHH
Q 003261 139 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 193 (835)
Q Consensus 139 r~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 193 (835)
+||.+|+.+||+.|..++||+..+|.+||..|||+++||+|||||||+|||++.+
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999996543
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.51 E-value=2.7e-15 Score=128.98 Aligned_cols=61 Identities=26% Similarity=0.502 Sum_probs=57.2
Q ss_pred CCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHH
Q 003261 134 KKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 194 (835)
Q Consensus 134 rr~Rtr~T~~Ql~~LE~~F---~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 194 (835)
||+|++||.+|+..||..| ..++||+..+|.+||.++||+++||++||||||+|+|++..+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 6678899999999999999 899999999999999999999999999999999999976554
No 52
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.51 E-value=3.3e-15 Score=131.99 Aligned_cols=64 Identities=22% Similarity=0.344 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 194 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 194 (835)
.++||+|++|+.+|+..||.+|.+ ++||+..+|++||.++||+++||++||||||+|+|+...+
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 456778899999999999999987 5999999999999999999999999999999999876544
No 53
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.51 E-value=1.6e-15 Score=149.52 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 191 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk 191 (835)
+++||+|+.||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4678889999999999999999999999999999999999999999999999999999974
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.51 E-value=4.4e-15 Score=131.77 Aligned_cols=61 Identities=26% Similarity=0.502 Sum_probs=56.6
Q ss_pred CCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHH
Q 003261 134 KKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 194 (835)
Q Consensus 134 rr~Rtr~T~~Ql~~LE~~F---~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 194 (835)
||+|++||.+|+..||.+| ..++||+..+|.+||.++||+++||++||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6778899999999999999 899999999999999999999999999999999999986544
No 55
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.50 E-value=2e-15 Score=149.49 Aligned_cols=64 Identities=30% Similarity=0.462 Sum_probs=52.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHH
Q 003261 130 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 193 (835)
Q Consensus 130 ~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 193 (835)
.+++||+|++||..|+..||+.|..++||+..+|.+||+++||+++||++||||||+|+||+.+
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 4567788999999999999999999999999999999999999999999999999999998654
No 56
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=9.7e-15 Score=133.68 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhh---------------------cccceeEEeecchhhHHH
Q 003261 130 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRL---------------------CLETRQVKFWFQNRRTQM 188 (835)
Q Consensus 130 ~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~L---------------------gLs~rQVkvWFQNRRaK~ 188 (835)
.+++||.|+.|++.|+..||..|+.++||+..+|++||.+| .|++.+|++||||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45678889999999999999999999999999999999999 689999999999999999
Q ss_pred HHHHHH
Q 003261 189 KTQLER 194 (835)
Q Consensus 189 Kkk~~r 194 (835)
|++++.
T Consensus 83 kr~~~~ 88 (102)
T 2da6_A 83 AFRQKL 88 (102)
T ss_dssp HHHHHH
T ss_pred HHhhHh
Confidence 976543
No 57
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=7e-15 Score=131.61 Aligned_cols=57 Identities=23% Similarity=0.398 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHH
Q 003261 137 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 193 (835)
Q Consensus 137 Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 193 (835)
+.+||.+|+..||..|..++||+..+|++||.++||+++||++||||||+|+|++.+
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 345999999999999999999999999999999999999999999999999986543
No 58
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.49 E-value=5.6e-15 Score=122.30 Aligned_cols=55 Identities=40% Similarity=0.507 Sum_probs=52.7
Q ss_pred CCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHH
Q 003261 136 RYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 190 (835)
Q Consensus 136 ~Rtr~T~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 190 (835)
++++||.+|+..||..|.. ++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 3578999999999999999 999999999999999999999999999999999986
No 59
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.48 E-value=3e-15 Score=145.56 Aligned_cols=62 Identities=29% Similarity=0.479 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHH
Q 003261 130 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 191 (835)
Q Consensus 130 ~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk 191 (835)
.+++||+|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 44667789999999999999999999999999999999999999999999999999999974
No 60
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.48 E-value=3.1e-15 Score=128.98 Aligned_cols=57 Identities=33% Similarity=0.467 Sum_probs=53.0
Q ss_pred CCCCCCCCHHHHHHHHHhh-hcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHH
Q 003261 134 KKRYHRHTPQQIQELESLF-KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 190 (835)
Q Consensus 134 rr~Rtr~T~~Ql~~LE~~F-~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 190 (835)
.+++.+++.+|+..||..| +.++||+..+|.+||+++||+++||++||||||+|+|+
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCC
Confidence 4455678899999999999 99999999999999999999999999999999999985
No 61
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.48 E-value=3.3e-15 Score=125.21 Aligned_cols=58 Identities=28% Similarity=0.421 Sum_probs=54.9
Q ss_pred CCCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHH
Q 003261 133 RKKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 190 (835)
Q Consensus 133 krr~Rtr~T~~Ql~~LE~~F---~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 190 (835)
.+++|++||.+|+..||..| ..++||+..++.+||.++||+++||++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46678899999999999999 89999999999999999999999999999999999885
No 62
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.47 E-value=1e-14 Score=129.67 Aligned_cols=58 Identities=36% Similarity=0.467 Sum_probs=55.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHhhcccceeEEeecchhhHHHH
Q 003261 132 PRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 189 (835)
Q Consensus 132 kkrr~Rtr~T~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 189 (835)
+++|+|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 45666889999999999999999 99999999999999999999999999999999987
No 63
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.47 E-value=5.4e-15 Score=130.52 Aligned_cols=59 Identities=36% Similarity=0.419 Sum_probs=54.0
Q ss_pred CCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 134 KKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 134 rr~Rtr~T~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
+++|++||.+|+..||.+|.. ++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 455667999999999999999 99999999999999999999999999999999999754
No 64
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=1.3e-14 Score=122.95 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhc-CCCCCHHHHHHHHHhhcccceeEEeecchhhHHHH
Q 003261 130 NPPRKKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 189 (835)
Q Consensus 130 ~~kkrr~Rtr~T~~Ql~~LE~~F~~-~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 189 (835)
.+++||.|+.|+.+|+..|+..|+. ++||+...|++||.++||++++|++||||||--.|
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 3467888999999999999999999 99999999999999999999999999999997543
No 65
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.46 E-value=1.4e-14 Score=141.44 Aligned_cols=60 Identities=33% Similarity=0.648 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 190 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 190 (835)
+++||+|++||.+|+..||..|+.++||+..+|.+||+++||+++||++||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 467788999999999999999999999999999999999999999999999999999985
No 66
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.45 E-value=4.1e-15 Score=127.34 Aligned_cols=56 Identities=36% Similarity=0.463 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHH
Q 003261 139 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 194 (835)
Q Consensus 139 r~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 194 (835)
.+|..|+..||+.|+.++||+..+|.+||+++||+++||++||||||+|+|+++..
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 57999999999999999999999999999999999999999999999999976543
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.45 E-value=1.7e-14 Score=122.08 Aligned_cols=53 Identities=25% Similarity=0.463 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 140 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 140 ~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
-|.+|+.+||..|..++||+..+|.+||..+||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 37899999999999999999999999999999999999999999999999754
No 68
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.44 E-value=7.4e-15 Score=134.16 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHh------------------hc---ccceeEEeecchhhHHH
Q 003261 130 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKR------------------LC---LETRQVKFWFQNRRTQM 188 (835)
Q Consensus 130 ~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~------------------Lg---Ls~rQVkvWFQNRRaK~ 188 (835)
.+++||.|+.||.+|+..||..|+.++||+..+|++||.. || |++.||++||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3566788899999999999999999999999999999999 88 99999999999999998
Q ss_pred HHHHH
Q 003261 189 KTQLE 193 (835)
Q Consensus 189 Kkk~~ 193 (835)
|+++.
T Consensus 86 k~k~~ 90 (99)
T 1lfb_A 86 AFRHK 90 (99)
T ss_dssp SCCC-
T ss_pred HHhch
Confidence 86554
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.42 E-value=1.3e-14 Score=122.49 Aligned_cols=49 Identities=41% Similarity=0.596 Sum_probs=46.2
Q ss_pred HHHHHHHHHhh-hcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHH
Q 003261 142 PQQIQELESLF-KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 190 (835)
Q Consensus 142 ~~Ql~~LE~~F-~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 190 (835)
+.|+.+||+.| ..++||+..+|.+||++|+|+++|||+||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 46899999999 67999999999999999999999999999999999984
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.41 E-value=3.9e-14 Score=138.91 Aligned_cols=61 Identities=30% Similarity=0.501 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHH
Q 003261 131 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 191 (835)
Q Consensus 131 ~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk 191 (835)
+++||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3567788999999999999999999999999999999999999999999999999999963
No 71
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=3.4e-14 Score=119.84 Aligned_cols=52 Identities=13% Similarity=0.262 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHH
Q 003261 139 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 190 (835)
Q Consensus 139 r~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 190 (835)
..+.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|.++
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 4568999999999999999999999999999999999999999999998764
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.37 E-value=5.7e-14 Score=138.57 Aligned_cols=63 Identities=27% Similarity=0.353 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHH
Q 003261 130 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 192 (835)
Q Consensus 130 ~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 192 (835)
.+++||+|+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 346678899999999999999999999999999999999999999999999999999998644
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.33 E-value=1.6e-13 Score=116.55 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHhhh---cCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHHHh
Q 003261 139 RHTPQQIQELESLFK---ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 196 (835)
Q Consensus 139 r~T~~Ql~~LE~~F~---~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e 196 (835)
+|+.+|+..||.+|. .++||+..+|.+||.++||+++||++||||||+|+|+...+++
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 699999999999999 9999999999999999999999999999999999997665544
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.24 E-value=6.6e-13 Score=134.72 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhc---------------------ccceeEEeecchhhHH
Q 003261 129 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------------LETRQVKFWFQNRRTQ 187 (835)
Q Consensus 129 ~~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~Lg---------------------Ls~rQVkvWFQNRRaK 187 (835)
..+++||.|+.|++.|+..||+.|..++||+..+|++||..|+ |++.||++||||||+|
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 3456678889999999999999999999999999999999999 9999999999999999
Q ss_pred HHH
Q 003261 188 MKT 190 (835)
Q Consensus 188 ~Kk 190 (835)
+|.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 874
No 75
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.22 E-value=2.3e-10 Score=117.34 Aligned_cols=197 Identities=11% Similarity=0.167 Sum_probs=140.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceeeccC--CCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHH-
Q 003261 336 RSMFLELALAAMDELVKMAQTDEPLWIRSFE--GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV- 412 (835)
Q Consensus 336 ~~~l~~lA~~Am~El~~la~~~eplWi~~~~--~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LV- 412 (835)
....++++++|+++++++... .--|-...+ .| ..| |.+..+. .|. .-|..++|...+..|.
T Consensus 20 ~~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g-~~v-----y~~~~~~------~g~---~~k~~~~v~~~~~~v~~ 83 (229)
T 1em2_A 20 EREYIRQGKEATAVVDQILAQ-EENWKFEKNNEYG-DTV-----YTIEVPF------HGK---TFILKTFLPCPAELVYQ 83 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTC-CEE-----EEEEETT------TEE---EEEEEEEESSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCC-CEE-----EEEecCC------CCc---eEEEEEEecCCHHHHHH
Confidence 456789999999999999863 347976532 23 111 3333321 121 3488899999999998
Q ss_pred HHhcChh---hhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeeccc--ccccccceeeEEeeeceecCCeEEEEE
Q 003261 413 ETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL--SPLVPVREVNFLRFCKQHAEGVWAVVD 487 (835)
Q Consensus 413 e~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~--SPLvp~Re~~flRyckq~~~g~waVvD 487 (835)
++|+|.+ +|-.. +..++.++.|.. ++ .+ +-++..+ .++++.|||.++|+++.. ++.|+||-
T Consensus 84 ~~~~d~~~r~~Wd~~----~~~~~vle~~~~-------~t-~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~ 149 (229)
T 1em2_A 84 EVILQPERMVLWNKT----VTACQILQRVED-------NT-LI-SYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSG 149 (229)
T ss_dssp HTTTCHHHHTTTCTT----EEEEEEEEEETT-------TE-EE-EEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEE
T ss_pred HHHhCccchhhcccc----cceEEEEEecCC-------Ce-EE-EEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEE
Confidence 7777665 55544 234566666542 12 23 4456655 678999999999999997 56699999
Q ss_pred EeccCccCCCCCCCccceeecCCcceEeecC--CCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003261 488 VSIDTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 565 (835)
Q Consensus 488 vSld~~~~~~~~~~~~~~~r~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqce 565 (835)
.|++.-. .|..+.++|+..+++|++|++++ +|.|+|||+-|++..-+ +| +.+++..+.-+.-.+++.|+.+|+
T Consensus 150 ~Sv~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~l~n~~~~~~~~~~~~~Lr~~~~ 224 (229)
T 1em2_A 150 IATSHSA-KPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LP---RYLIHQSLAATMFEFAFHLRQRIS 224 (229)
T ss_dssp EECCCTT-SCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccCCC-CCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997432 22223589999999999999987 67899999999987765 55 677887777777788999988887
Q ss_pred HH
Q 003261 566 CL 567 (835)
Q Consensus 566 rl 567 (835)
.+
T Consensus 225 ~~ 226 (229)
T 1em2_A 225 EL 226 (229)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 76
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.20 E-value=1.9e-10 Score=117.49 Aligned_cols=193 Identities=15% Similarity=0.207 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeecc--CCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHh-
Q 003261 339 FLELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL- 415 (835)
Q Consensus 339 l~~lA~~Am~El~~la~~~eplWi~~~--~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~l- 415 (835)
...+|++||+|++++.+ ++.-|.... +.| .. =|.+.++.. | -.=|..++|...+.+|.+.|
T Consensus 12 y~~~~~~~~~~~l~~~~-~~~gW~~~~~~~~g-v~-----vy~~~~~~~------g---~~~k~~~~v~~~~~~v~~~l~ 75 (221)
T 3p0l_A 12 YLQQGEEAMQKALGILS-NQEGWKKESQQDNG-DK-----VMSKVVPDV------G---KVFRLEVVVDQPMERLYEELV 75 (221)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTCEEEEECTTS-CE-----EEEEECSSS------C---EEEEEEEEESSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCeEeeecCCC-cE-----EEEEEcCCC------c---eEEEEEEEEcCCHHHHHHHHH
Confidence 57899999999999976 345797652 333 11 233333211 2 34488999999999999998
Q ss_pred cC---hhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeec-ccccccccceeeEEeeeceecCCeEEEEEEecc
Q 003261 416 MD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ-VLSPLVPVREVNFLRFCKQHAEGVWAVVDVSID 491 (835)
Q Consensus 416 mD---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~-v~SPLvp~Re~~flRyckq~~~g~waVvDvSld 491 (835)
+| +.+|-.. +..++.++.++. . -.+.|.... .+.++++.|||.++||.++. +|.++|+-.|++
T Consensus 76 ~d~~~r~~Wd~~----~~~~~vle~~~~-------~-t~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~ 142 (221)
T 3p0l_A 76 ERMEAMGEWNPN----VKEIKVLQKIGK-------D-TFITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATD 142 (221)
T ss_dssp TTGGGTTTSCTT----CSEEEEEEECSS-------S-EEEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEECC
T ss_pred hccchhhhcCcc----hheEEEEEecCC-------C-eEEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEecc
Confidence 46 4667765 233555555442 2 246664432 23568999999999999986 688999999987
Q ss_pred CccCCCCCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003261 492 TIRETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 565 (835)
Q Consensus 492 ~~~~~~~~~~~~~~~r~PSGclIq~~~nG--~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqce 565 (835)
.-. -|..+.++|+..+++|++|+++++| .|+|||+-|++..-+ +| +-+++..+.-+.-.++..|+++|+
T Consensus 143 ~~~-~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 143 FGN-MPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp CTT-SCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCC-CCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 321 1222358999999999999999988 999999999988766 43 456777777777789999988887
No 77
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.18 E-value=1.4e-10 Score=120.49 Aligned_cols=191 Identities=14% Similarity=0.162 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHH-HHhcChhh
Q 003261 342 LALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV-ETLMDPNR 420 (835)
Q Consensus 342 lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LV-e~lmD~~~ 420 (835)
+++.++.|+++.+.....-|-...+.... +.|.+.. +.|...-.=|..++|...+.+++ ++|.|+.+
T Consensus 33 ~l~~~~~~ll~~~~~~~~gW~~~~~~~gi---------~V~~k~~---~~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~~ 100 (237)
T 2pso_A 33 YLNHLIQGLQKEAKEKFKGWVTCSSTDNT---------DLAFKKV---GDGNPLKLWKASVEVEAPPSVVLNRVLRERHL 100 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCSCEEECCSSSC---------EEEEECC---CSSCCCCEEEEEEEESSCHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCCCe---------EEEEEEc---CCCCCcEEEEEEEEEcCChHHHHHHHHhhhhh
Confidence 34567778887765445569765432201 1221111 12333345678888877777764 78999999
Q ss_pred hhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeece-ecCCeEEEEEEeccCccCCCCC
Q 003261 421 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQ-HAEGVWAVVDVSIDTIRETSGA 499 (835)
Q Consensus 421 W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq-~~~g~waVvDvSld~~~~~~~~ 499 (835)
|-.. +..++.++.|+. ...++|..+..+.| ++.|||.++||.++ +++|.++||-.|++.-. .|..
T Consensus 101 Wd~~----~~~~~vle~id~--------~~~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~-~P~~ 166 (237)
T 2pso_A 101 WDED----FVQWKVVETLDR--------QTEIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEE-AQLL 166 (237)
T ss_dssp TCTT----BCCCEEEEEEET--------TEEEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCCTT-CCCC
T ss_pred HHhh----hceEEEEEEcCC--------CcEEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccCCC-CCCC
Confidence 9887 334677777652 23677888877666 79999999999985 78999999999998532 2322
Q ss_pred CCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHH
Q 003261 500 PAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQC 564 (835)
Q Consensus 500 ~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqc 564 (835)
.++|+..+++|++|+++.+|.|+|||+-|++.. ..+|.-+..++.. .+-.-++.|+.++
T Consensus 167 -g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~-G~iP~~ln~~~~~----~~~~~l~~LR~~~ 225 (237)
T 2pso_A 167 -GGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLK-GHSPEWYSKGFGH----LCAAEVARIRNSF 225 (237)
T ss_dssp -SSEECCEEEEEEEEEECSTTCEEEEEEEEECCS-SSCTTTTTTHHHH----HHHHHHHHHHHTT
T ss_pred -CcEEEEEeccEEEEEECCCCCEEEEEEEEeCCC-CCchHHHHHHHHH----HHHHHHHHHHHHH
Confidence 589999999999999999999999999999987 4577665333322 2223466664443
No 78
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.12 E-value=1.6e-11 Score=109.93 Aligned_cols=59 Identities=29% Similarity=0.419 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHHHHHHh
Q 003261 138 HRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 196 (835)
Q Consensus 138 tr~T~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e 196 (835)
+-|+.+++..|+.+|.+ ++||+..+|.+||+++||+++||++||||||.|+|+...+.+
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 46899999999999977 899999999999999999999999999999999998765543
No 79
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.08 E-value=2.1e-11 Score=125.32 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=52.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhc---------------------ccceeEEeecchhhHH
Q 003261 129 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------------LETRQVKFWFQNRRTQ 187 (835)
Q Consensus 129 ~~~kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~Lg---------------------Ls~rQVkvWFQNRRaK 187 (835)
..+++||.|+.|++.|+..||+.|..++||+..+|++||+.++ |++.||++||||||++
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 4456678888999999999999999999999999999999998 7899999999999986
Q ss_pred H
Q 003261 188 M 188 (835)
Q Consensus 188 ~ 188 (835)
.
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 4
No 80
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=5.9e-11 Score=101.25 Aligned_cols=46 Identities=22% Similarity=0.422 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHH
Q 003261 142 PQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 187 (835)
Q Consensus 142 ~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK 187 (835)
.+|+..||++|..+++|+..++.+||..+||+.++||+||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999974
No 81
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.98 E-value=5.3e-09 Score=105.42 Aligned_cols=152 Identities=16% Similarity=0.222 Sum_probs=118.5
Q ss_pred eeeeceeEEE-echhhHHHHhcC---hhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeE
Q 003261 396 EASRETGMVI-INSLALVETLMD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF 471 (835)
Q Consensus 396 EAsR~~g~V~-~~~~~LVe~lmD---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~f 471 (835)
-.-|..++|. ..+.++.+.|+| +.+|... +...+||.. +| -.++|.++..|.|+ ..|||.+
T Consensus 52 ~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~-------~~~~~vle~------~~-~~i~~~~~~~p~p~-~~RD~v~ 116 (214)
T 1ln1_A 52 YEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQY-------VKELYEQEC------NG-ETVVYWEVKYPFPM-SNRDYVY 116 (214)
T ss_dssp EEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTT-------EEEEEEEEE------TT-EEEEEEEECCCTTS-CCEEEEE
T ss_pred EEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHH-------HhhEEEecc------CC-CEEEEEEEEcCCCC-CCceEEE
Confidence 3568999995 999999999999 5677776 455666654 23 24789999999886 9999999
Q ss_pred Eeeeceec-CC--eEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccc
Q 003261 472 LRFCKQHA-EG--VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISG 548 (835)
Q Consensus 472 lRyckq~~-~g--~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg 548 (835)
+|+++.++ +| .|+|+-.|++.-. .|..+.++|.+.+++|++|++..+|.|+||++-|++.. ..+|.- |++..
T Consensus 117 ~~~~~~~~~~g~~~~~i~~~Sv~~p~-~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~-G~iP~~---l~n~~ 191 (214)
T 1ln1_A 117 LRQRRDLDMEGRKIHVILARSTSMPQ-LGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GQIPSW---LINWA 191 (214)
T ss_dssp EEEEEEECSTTCCEEEEEEEECCBTT-BCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS-SCCCHH---HHHHH
T ss_pred EEEEEecccCCCeEEEEEEecccCCC-CCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCC-CcccHH---HHHHH
Confidence 99999875 66 5999999987432 22223589999999999999999999999999999987 445543 34445
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 003261 549 MGFGAQRWVATLQRQCECL 567 (835)
Q Consensus 549 ~afGA~rWlatLqRqcerl 567 (835)
+.-++..++..|+++|+..
T Consensus 192 ~~~~~~~~l~~l~k~~~~y 210 (214)
T 1ln1_A 192 AKNGVPNFLKDMARACQNY 210 (214)
T ss_dssp HHTHHHHHHHHHHHHHHTC
T ss_pred HHHHhHHHHHHHHHHHHhc
Confidence 5566778889998888743
No 82
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.92 E-value=1.1e-10 Score=128.05 Aligned_cols=56 Identities=27% Similarity=0.426 Sum_probs=52.3
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHH
Q 003261 134 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 189 (835)
Q Consensus 134 rr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 189 (835)
++.++.++.+|+..||+.|+.++||+..+|++||+++||+++|||+||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 34566799999999999999999999999999999999999999999999999875
No 83
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.91 E-value=1.2e-08 Score=104.66 Aligned_cols=190 Identities=11% Similarity=0.135 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccC-CCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcC
Q 003261 339 FLELALAAMDELVKMAQTDEPLWIRSFE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD 417 (835)
Q Consensus 339 l~~lA~~Am~El~~la~~~eplWi~~~~-~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD 417 (835)
+.+.+.++|.++..+. +.-|-...+ .| .+.|.+. ..+...-.-|..++|...+..|.+.|+|
T Consensus 26 ~~~~~~e~l~~~~~~~---~~~W~~~~~~~g----------v~vy~~~----~~~~~~~~~k~~~~v~~~~~~v~~~l~d 88 (224)
T 1jss_A 26 ISTKLQNTLIQYHSIE---EDEWRVAKKAKD----------VTVWRKP----SEEFNGYLYKAQGVMDDVVNNVIDHIRP 88 (224)
T ss_dssp HHHHHHHHHHHHTTSC---GGGCEEEEEETT----------EEEEEEE----CSSSSSEEEEEEEEESSCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhhhC---CCCCEEEEECCC----------EEEEEEe----ccCCCceEEEEEEEEeCCHHHHHHHHhC
Confidence 5666666666655543 556965432 22 1222220 1111223458889999999999999999
Q ss_pred hh---hhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeeccc-ccccccceeeEEeeeceecCCeEEEEEEeccCc
Q 003261 418 PN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL-SPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTI 493 (835)
Q Consensus 418 ~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~-SPLvp~Re~~flRyckq~~~g~waVvDvSld~~ 493 (835)
.. +|-.. +..++.++.|. +.-.+.|.-+.-+ -|+|..|||.++|+.++.++| ++|+-+|++.-
T Consensus 89 ~~~r~~Wd~~----~~~~~vle~id--------~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~hp 155 (224)
T 1jss_A 89 GPWRLDWDRL----MTSLDVLEHFE--------ENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEG-LLSCGVSVEWS 155 (224)
T ss_dssp STTHHHHCSS----EEEEEEEEECS--------TTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTE-EEEEEEECCCC
T ss_pred cccccccccc----eeeEEEEEEcC--------CCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCe-EEEEEeeeecC
Confidence 65 78765 23355555543 2235666666543 457999999999999998877 78899998843
Q ss_pred cCCCCCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003261 494 RETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 565 (835)
Q Consensus 494 ~~~~~~~~~~~~~r~PSGclIq~~~nG--~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqce 565 (835)
.. .+.++|+...++|++|+++++| .|+|||+-|++.--+ +| +.+++..+.-+...++..|+.+|+
T Consensus 156 ~~---~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 156 ET---RPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IP---QSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp CC---CTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CC---CCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCC-cc---HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 22 2358999999999999999875 899999999988754 44 466777777777888999988765
No 84
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.72 E-value=5.4e-08 Score=102.79 Aligned_cols=128 Identities=11% Similarity=0.099 Sum_probs=96.1
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeeccccc--ccccceeeEEeeec
Q 003261 399 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCK 476 (835)
Q Consensus 399 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SP--Lvp~Re~~flRyck 476 (835)
|..++|...+..|.+.|+|.+.+.+=-+.+ ..++.++-|+. + .++| ++..++| ++++|||..|||.+
T Consensus 91 k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~-~~~~vle~id~------~---~ivY-~~~~p~~~~~v~~RDFV~lr~~r 159 (258)
T 3fo5_A 91 HMEMVVHVDAAQAFLLLSDLRQRPEWDKHY-RSVELVQQVDE------D---DAIY-HVTSPALGGHTKPQDFVILASRR 159 (258)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGGGGTCTTC-CEEEEEEEEET------T---EEEE-EEEECCCTTCSSCEEEEEEEEEE
T ss_pred EEEEEEeCCHHHHHHHHhCchhHhHhhhhc-cEEEEEEEcCC------C---eEEE-EEecCCccCCCCCCEEEEEEEEE
Confidence 888899999999999999886444333332 33566655552 1 4677 6777876 79999999999998
Q ss_pred ee-cCCe-EEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeecccccccc
Q 003261 477 QH-AEGV-WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQL 540 (835)
Q Consensus 477 q~-~~g~-waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l 540 (835)
.. .+|. ++|+-+|++.-. -|..+.++|+..+|+||+|+++++|.|+||++-|++- ..++..
T Consensus 160 ~~~~~G~~yvi~~~SV~hp~-~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dp--G~lP~~ 222 (258)
T 3fo5_A 160 KPCDNGDPYVIALRSVTLPT-HRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATP--GVLNYV 222 (258)
T ss_dssp CCSSTTCCEEEEEEEEECTT-SCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCG--GGHHHH
T ss_pred eccCCCCEEEEEEEeccCCC-CCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCC--CCCCce
Confidence 74 4775 999999987432 2222358999999999999999999999999988873 444443
No 85
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.58 E-value=6.7e-07 Score=88.56 Aligned_cols=152 Identities=14% Similarity=0.061 Sum_probs=110.7
Q ss_pred eeeceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeec
Q 003261 397 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK 476 (835)
Q Consensus 397 AsR~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyck 476 (835)
.=|..++|...+.++.+.|+|.+...+--|. +...+||.. . ++ -.++|.++..|-| +..|||.++|+.+
T Consensus 28 ~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~----~~~~~vle~-~----~~-~~i~y~~~~~p~p-~~~RD~v~~~~~~ 96 (189)
T 3qsz_A 28 EFRGEVRLKAAADDVVKVLRDANAFRQWMPD----VAASELLKA-T----DT-EQYHYLDNSAPWP-VSNRDGVYHFTYE 96 (189)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTSTT----EEEEEEEEE-C----SS-EEEEEEEECCSSS-CCCEEEEEEEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHhHHHhhhHHHh----cCEEEEEee-c----CC-ceEEEEEeecCCC-cCCcceEEEEEEE
Confidence 4688899999999999999997765555554 566667765 2 12 3567888887766 7999999999999
Q ss_pred eecCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHH
Q 003261 477 QHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRW 556 (835)
Q Consensus 477 q~~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rW 556 (835)
...+|...|+=.+.. ...|..+.++|++.+++|++|++ .+|.|+||++-|++..-+ +|. -|++..+.-+.-..
T Consensus 97 ~~~~g~~~i~~~~~~--~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G~-iP~---~lvn~~~~~~~~~~ 169 (189)
T 3qsz_A 97 KAGDGAITVRVEAVP--DYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGGS-IPS---WLANQTVVETPFGT 169 (189)
T ss_dssp ECTTSCEEEEEEECT--TSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCSS-SCH---HHHHHTTTHHHHHH
T ss_pred ECCCCeEEEEEEcCC--CccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCCC-CCH---HHHHHHHHHHHHHH
Confidence 988887655433311 11122235899999999999999 999999999999987633 433 34555555566678
Q ss_pred HHHHHHHHHH
Q 003261 557 VATLQRQCEC 566 (835)
Q Consensus 557 latLqRqcer 566 (835)
+..|+++|+.
T Consensus 170 l~~L~k~~~~ 179 (189)
T 3qsz_A 170 LKALRSHLRQ 179 (189)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhh
Confidence 8899888764
No 86
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.34 E-value=2e-08 Score=75.84 Aligned_cols=21 Identities=48% Similarity=0.874 Sum_probs=18.3
Q ss_pred eeEEeecchhhHHHHHHHHHH
Q 003261 175 RQVKFWFQNRRTQMKTQLERH 195 (835)
Q Consensus 175 rQVkvWFQNRRaK~Kkk~~r~ 195 (835)
+||+|||||||+||||++...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 699999999999999877653
No 87
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.32 E-value=3.4e-06 Score=87.80 Aligned_cols=200 Identities=13% Similarity=0.211 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHhhcC---CCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEE-echhhHHHH
Q 003261 339 FLELALAAMDELVKMAQT---DEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVET 414 (835)
Q Consensus 339 l~~lA~~Am~El~~la~~---~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~-~~~~~LVe~ 414 (835)
+.++++..+.|.+..+.. ++.-|-...+.+. .+.|.+.. ...|...-.=|..+.|. ..+..+.+.
T Consensus 24 ~~~~~~~~~~e~l~~~~~~~~~~~~W~~~~~~~g---------v~vy~~~~--~~~g~~~~~~K~~~~~~~~~~~~v~~~ 92 (255)
T 2e3n_A 24 FVQKVEEMVQNHMTYSLQDVGGDANWQLVVEEGE---------MKVYRREV--EENGIVLDPLKATHAVKGVTGHEVCNY 92 (255)
T ss_dssp THHHHHHHHHHHHHHTTSCCTTCTTEEEEEEETT---------EEEEEECC--EETTEECCCEEEEEEEETCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcEEEEeCCC---------EEEEEEEc--CCCCceeeeEEEEEEEcCCCHHHHHHH
Confidence 455566666666666543 3356976533210 12332211 11232211345556665 789999999
Q ss_pred hcCh---hhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceec----C--CeEEE
Q 003261 415 LMDP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA----E--GVWAV 485 (835)
Q Consensus 415 lmD~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~----~--g~waV 485 (835)
|+|. .+|-.. +..++.++.|.. ++ .++|..+..|.|+ ..|||.++|++++.. + +.|+|
T Consensus 93 l~d~~~r~~Wd~~----~~~~~vle~i~~-------~~-~i~y~~~~~p~p~-s~RDfV~~r~~~~~~~~~~~g~~~~~i 159 (255)
T 2e3n_A 93 FWNVDVRNDWETT----IENFHVVETLAD-------NA-IIIYQTHKRVWPA-SQRDVLYLSVIRKIPALTENDPETWIV 159 (255)
T ss_dssp HHCGGGHHHHCCS----EEEEEEEEEEET-------TE-EEEEEEECCCTTS-CCEEEEEEEEEEEECCSSTTSCCEEEE
T ss_pred HhCcchHhhhhhh----cceeEEEEEcCC-------CC-EEEEEEeecCCCc-CCceeEEEEEEEeccccccCCCCEEEE
Confidence 9994 567665 344666666542 12 7889999998886 889999999999883 3 59999
Q ss_pred EEEeccCccCCCCCCCccceee---cCCcceEeecCC--------CccEEEEEEeeeeccccccccchhhhccchhHHHH
Q 003261 486 VDVSIDTIRETSGAPAFVNCRR---LPSGCVVQDMPN--------GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQ 554 (835)
Q Consensus 486 vDvSld~~~~~~~~~~~~~~~r---~PSGclIq~~~n--------G~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~ 554 (835)
+..|++.-. .|..+.++|... +.+|++|++..+ +.|+|||+-|++.-- .+|.- +++.....+.-
T Consensus 160 ~~~Sv~~~~-~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G-~iP~~---lvn~~~~~~~~ 234 (255)
T 2e3n_A 160 CNFSVDHDS-APLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG-WAPAS---VLRAVAKREYP 234 (255)
T ss_dssp EEEECCCTT-SCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS-CCCHH---HHHHHHHHHHH
T ss_pred EEeccCCCC-CCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC-ccCHH---HHHHHHhcccc
Confidence 999998532 122224789884 678999998733 579999999998764 34432 34555566677
Q ss_pred HHHHHHHHHHHHH
Q 003261 555 RWVATLQRQCECL 567 (835)
Q Consensus 555 rWlatLqRqcerl 567 (835)
..+..|+.+|+..
T Consensus 235 ~~l~~L~k~v~~~ 247 (255)
T 2e3n_A 235 KFLKRFTSYVQEK 247 (255)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7888888887744
No 88
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=97.36 E-value=0.0081 Score=61.12 Aligned_cols=198 Identities=14% Similarity=0.146 Sum_probs=116.7
Q ss_pred hhhHHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhh-
Q 003261 586 GGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL- 664 (835)
Q Consensus 586 ~Gr~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FL- 664 (835)
.....++++|+..+..|-.-+.. ..+|... . ..++|+|..+...+. + |.++ ++..-++++|+.||++|
T Consensus 19 ~~~~~y~~~a~~~~~~~l~~~~~--~~~W~~~-~--~~~gv~v~~~~~~~~---~-~~~~--k~~~~v~~~~~~v~~~l~ 87 (231)
T 2r55_A 19 YFQSMAAQMSEAVAEKMLQYRRD--TAGWKIC-R--EGNGVSVSWRPSVEF---P-GNLY--RGEGIVYGTLEEVWDCVK 87 (231)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHC--CSSCEEE-E--CCSSEEEEEEECSSS---S-SEEE--EEEEEESSCHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHhcC--CCCCEEE-E--eCCCEEEEEEccCCC---C-CcEE--EEEEEECCCHHHHHHHHH
Confidence 34456999999999888876533 4789977 3 357899998876322 2 3444 44445599999999999
Q ss_pred -hccccchhhhhhcCCCCcceeeecccCCCCCceEEEEE-eccc----CCCCCceEEEEccccCCCCcEE-EEeecchhh
Q 003261 665 -RDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLR-ASAI----NANQSSMLILQETCTDAAGSLV-VYAPVDIPA 737 (835)
Q Consensus 665 -rde~~R~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr-~~~~----~~~~~~~liLQes~td~sgs~v-VyAPvD~~~ 737 (835)
.|...|.+||.... ..+.+..|. .... |++ +... -....+..+|.-...+.-|+++ +.-.||-+.
T Consensus 88 ~~d~~~r~~Wd~~~~--~~~vle~i~----~~~~--i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~~~ 159 (231)
T 2r55_A 88 PAVGGLRVKWDENVT--GFEIIQSIT----DTLC--VSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEHPL 159 (231)
T ss_dssp C--CCSHHHHCTTCS--EEEEEEECS----SSEE--EEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCCTT
T ss_pred hhCcchhhhhccccc--eeEEEEEcC----CCEE--EEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccCCC
Confidence 99999999997432 233333332 1222 333 2211 1234566666654445557775 577788654
Q ss_pred hhhhhcCCCCCC--ccccCCccEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh
Q 003261 738 MHVVMNGGDSAY--VALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET 815 (835)
Q Consensus 738 m~~vm~G~D~~~--v~LLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t 815 (835)
+- .-+.+ +.++++||.|-|.... .++|.+|.-+|+=.... +...-|..
T Consensus 160 ~P-----~~~~~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G~----iP~~lvn~ 209 (231)
T 2r55_A 160 CP-----PKPGFVRGFNHPCGCFCEPLPGE---------------------PTKTNLVTFFHTDLSGY----LPQNVVDS 209 (231)
T ss_dssp SC-----CCTTCEEEEECSEEEEEEECC-----------------------CCCEEEEEEECEECCSS----CCHHHHHH
T ss_pred CC-----CCCCCEEEEEEeeEEEEEEeCCC---------------------CCcEEEEEEEEeCCCCC----ccHHHHHH
Confidence 21 11233 3588999999984211 14689988777654432 22211221
Q ss_pred -HhhhhhHHHHHHHHHhc
Q 003261 816 -VNNLISCTVQKIKAALQ 832 (835)
Q Consensus 816 -v~~li~~tv~~Ik~Al~ 832 (835)
+..-+-.++++++.++.
T Consensus 210 ~~~~~~~~~~~~Lr~~~~ 227 (231)
T 2r55_A 210 FFPRSMTRFYANLQKAVK 227 (231)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhHhHHHHHHHHHHHHH
Confidence 22223347777777764
No 89
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=96.92 E-value=0.021 Score=56.12 Aligned_cols=171 Identities=14% Similarity=0.153 Sum_probs=98.1
Q ss_pred CCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecccC
Q 003261 612 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKG 691 (835)
Q Consensus 612 ~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~ia~g 691 (835)
++|... . ..++|+|..++.. |.+ +..-++...++.||+.||++|.|...|.+||-. +.+.--|.+
T Consensus 3 ~~W~~~-~--~~~gv~v~~~~~~---~~~---~~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~-----~~~~~vle~- 67 (189)
T 3qsz_A 3 DGWSLA-K--DAEGIKVYVRNVE---GSP---LREFRGEVRLKAAADDVVKVLRDANAFRQWMPD-----VAASELLKA- 67 (189)
T ss_dssp CCCEEE-E--EETTEEEEEECCT---TCS---SCEEEEEEEESSCHHHHHHHHHCGGGGGGTSTT-----EEEEEEEEE-
T ss_pred CCCEEE-E--cCCCEEEEEEeCC---CCC---eEEEEEEEEEECCHHHHHHHHHhHHHhhhHHHh-----cCEEEEEee-
Confidence 589877 3 2578999999862 221 234566777789999999999999999999964 334333433
Q ss_pred CCCCceEEEEEeccc-CCCCCceEEEEccccCCCCcEEEEeecchhhhhhhhcCCCCCC--ccccCCccEEcCCCCCCCC
Q 003261 692 QDHGNCVSLLRASAI-NANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAY--VALLPSGFAIVPDGPDSRG 768 (835)
Q Consensus 692 ~~~gn~vsllr~~~~-~~~~~~~liLQes~td~sgs~vVyAPvD~~~m~~vm~G~D~~~--v~LLPSGF~I~Pdg~~~~~ 768 (835)
+.+..|.-...... .-...+..++.....|..|.++|..-.+-+.+ ...+.+ +..+++||.|-| |.
T Consensus 68 -~~~~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~g~~~i~~~~~~~~~-----P~~~~~VR~~~~~~~~~i~p-~~---- 136 (189)
T 3qsz_A 68 -TDTEQYHYLDNSAPWPVSNRDGVYHFTYEKAGDGAITVRVEAVPDYL-----PLRKGKVRIPRAKGQWTLVP-DA---- 136 (189)
T ss_dssp -CSSEEEEEEEECCSSSCCCEEEEEEEEEEECTTSCEEEEEEECTTSS-----CCCTTSEECCCEEEEEEEEE-CS----
T ss_pred -cCCceEEEEEeecCCCcCCcceEEEEEEEECCCCeEEEEEEcCCCcc-----CCCCCeEEeeEeeEEEEEEE-CC----
Confidence 33344433333322 12334555555433454466554433221110 011233 457788888888 32
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh--HhhhhhHHHHHHHHHhc
Q 003261 769 PLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET--VNNLISCTVQKIKAALQ 832 (835)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t--v~~li~~tv~~Ik~Al~ 832 (835)
++|.+|.-+|+=.... + +..+.. +...+-.++++++.++.
T Consensus 137 -------------------~~t~vt~~~~~dp~G~----i-P~~lvn~~~~~~~~~~l~~L~k~~~ 178 (189)
T 3qsz_A 137 -------------------DGVDVTYQMHASPGGS----I-PSWLANQTVVETPFGTLKALRSHLR 178 (189)
T ss_dssp -------------------SSEEEEEEEEECSCSS----S-CHHHHHHTTTHHHHHHHHHHHHHHT
T ss_pred -------------------CeEEEEEEEEeCCCCC----C-CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3688887777754432 2 233322 33344457777777664
No 90
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=96.40 E-value=0.051 Score=55.24 Aligned_cols=191 Identities=17% Similarity=0.218 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccc
Q 003261 591 MLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLR 670 (835)
Q Consensus 591 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrde~~R 670 (835)
+.+.+...+..|.... ..+|... .. .++|+|.++...+. .|-+. ++..-+++||+.||++|.|...|
T Consensus 26 ~~~~~~e~l~~~~~~~----~~~W~~~-~~--~~gv~vy~~~~~~~----~~~~~--k~~~~v~~~~~~v~~~l~d~~~r 92 (224)
T 1jss_A 26 ISTKLQNTLIQYHSIE----EDEWRVA-KK--AKDVTVWRKPSEEF----NGYLY--KAQGVMDDVVNNVIDHIRPGPWR 92 (224)
T ss_dssp HHHHHHHHHHHHTTSC----GGGCEEE-EE--ETTEEEEEEECSSS----SSEEE--EEEEEESSCHHHHHHHHSSSTTH
T ss_pred HHHHHHHHHHHHhhhC----CCCCEEE-EE--CCCEEEEEEeccCC----CceEE--EEEEEEeCCHHHHHHHHhCcccc
Confidence 4444444444443322 5689866 32 47899999865332 23344 44455699999999999999999
Q ss_pred hhhhhhcCCCCcceeeecccCCCCCceEEEEEecccC---CCCCceEEEEccccCCCCcEEEEeecchhhhhhhhcCCCC
Q 003261 671 SEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAIN---ANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDS 747 (835)
Q Consensus 671 ~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~~---~~~~~~liLQes~td~sgs~vVyAPvD~~~m~~vm~G~D~ 747 (835)
.+||..... .+.+-+| +..+.|--......- ....+.+++.....+..|.+++.-.||-+.+ .+
T Consensus 93 ~~Wd~~~~~--~~vle~i----d~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~vi~~~Sv~hp~~-------~~ 159 (224)
T 1jss_A 93 LDWDRLMTS--LDVLEHF----EENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLLSCGVSVEWSET-------RP 159 (224)
T ss_dssp HHHCSSEEE--EEEEEEC----STTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEEEEEEEECCCCCC-------CT
T ss_pred cccccceee--EEEEEEc----CCCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCeEEEEEeeeecCCC-------CC
Confidence 999964321 2333333 233344333332221 2455677766533344556666677776653 13
Q ss_pred CCc--cccCCccEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHhH-hhhhhHHH
Q 003261 748 AYV--ALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETV-NNLISCTV 824 (835)
Q Consensus 748 ~~v--~LLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~tv-~~li~~tv 824 (835)
.+| .++++||.|-|.+.. ..+|.+|.-+|+=... .+...-|..+ -..+-.++
T Consensus 160 g~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G----~iP~~lvn~~~~~~~~~~~ 214 (224)
T 1jss_A 160 EFVRGYNHPCGWFCVPLKDS---------------------PSQSLLTGYIQTDLRG----MIPQSAVDTAMASTLANFY 214 (224)
T ss_dssp TSEECEECSEEEEEEEETTE---------------------EEEEEEEEEECEECCS----CCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecccEEEEEEcCCC---------------------CCceEEEEEEEeCCCC----CccHHHHHHHHHHhHHHHH
Confidence 444 478999999883211 1358888666554433 3332233322 22233477
Q ss_pred HHHHHHhc
Q 003261 825 QKIKAALQ 832 (835)
Q Consensus 825 ~~Ik~Al~ 832 (835)
+.++.++.
T Consensus 215 ~~Lr~~~~ 222 (224)
T 1jss_A 215 SDLRKGLR 222 (224)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 77777654
No 91
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=96.28 E-value=0.13 Score=51.82 Aligned_cols=194 Identities=14% Similarity=0.194 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhh-hcc
Q 003261 589 RSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL-RDE 667 (835)
Q Consensus 589 ~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FL-rde 667 (835)
..-.++++.-+..+..-+. ...+|... . ...++|.|.+++. +|. |.++ ++..-+++||+.||++| .|.
T Consensus 10 ~~y~~~~~~~~~~~l~~~~--~~~gW~~~-~-~~~~gv~vy~~~~---~~~--g~~~--k~~~~v~~~~~~v~~~l~~d~ 78 (221)
T 3p0l_A 10 LAYLQQGEEAMQKALGILS--NQEGWKKE-S-QQDNGDKVMSKVV---PDV--GKVF--RLEVVVDQPMERLYEELVERM 78 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHH--SCTTCEEE-E-ECTTSCEEEEEEC---SSS--CEEE--EEEEEESSCHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHHHHHHHHh--CCCCCeEe-e-ecCCCcEEEEEEc---CCC--ceEE--EEEEEEcCCHHHHHHHHHhcc
Confidence 3445566655555554443 35689976 2 1246788999884 332 4444 44455699999999999 588
Q ss_pred ccchhhhhhcCCCCcceeeecccCCCCCceEEEEEe--cc--cC-CCCCceEEEEccccCCCCcEEEE-eecchhhhhhh
Q 003261 668 RLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRA--SA--IN-ANQSSMLILQETCTDAAGSLVVY-APVDIPAMHVV 741 (835)
Q Consensus 668 ~~R~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr~--~~--~~-~~~~~~liLQes~td~sgs~vVy-APvD~~~m~~v 741 (835)
..|.+||.... ..+.+-+| +.+.. |++. .. .. ....+..+|.-...+ .+.+++. -.|+-+.+-
T Consensus 79 ~~r~~Wd~~~~--~~~vle~~----~~~t~--I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~~~~~P-- 147 (221)
T 3p0l_A 79 EAMGEWNPNVK--EIKVLQKI----GKDTF--ITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATDFGNMP-- 147 (221)
T ss_dssp GGTTTSCTTCS--EEEEEEEC----SSSEE--EEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEECCCTTSC--
T ss_pred chhhhcCcchh--eEEEEEec----CCCeE--EEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEeccCCCCC--
Confidence 89999996432 23333444 22222 3332 11 11 234567776654444 3555554 455544321
Q ss_pred hcCCCCCCc--cccCCccEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHhH-hh
Q 003261 742 MNGGDSAYV--ALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETV-NN 818 (835)
Q Consensus 742 m~G~D~~~v--~LLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~tv-~~ 818 (835)
..+.+| .++++||.|-|.+.. ..+|.+|.-+|+=... .+..--|..+ ..
T Consensus 148 ---~~~g~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G----~iP~~lvn~~~~~ 199 (221)
T 3p0l_A 148 ---EQKGVIRAEHGPTCMVLHPLAGS---------------------PSKTKLTWLLSIDLKG----WLPKSIINQVLSQ 199 (221)
T ss_dssp ---CCTTSEECEECSCEEEEEEETTE---------------------EEEEEEEEEECEECCS----SCCHHHHHHHHHH
T ss_pred ---CCCCeEEEeccceEEEEEECCCC---------------------CCcEEEEEEEEecCCC----CCCHHHHHHHHHH
Confidence 113344 578999999984321 1368888888775443 3333333332 23
Q ss_pred hhhHHHHHHHHHhc
Q 003261 819 LISCTVQKIKAALQ 832 (835)
Q Consensus 819 li~~tv~~Ik~Al~ 832 (835)
.+-.+++.++.++.
T Consensus 200 ~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 200 TQVDFANHLRKRLE 213 (221)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh
Confidence 33348888888876
No 92
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=96.11 E-value=0.12 Score=51.48 Aligned_cols=172 Identities=17% Similarity=0.194 Sum_probs=99.4
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 003261 610 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 688 (835)
Q Consensus 610 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~i 688 (835)
...+|... .. .++|+|..++.. +. .+..-++..-++ +||+.||++|.|...|.+||.... +.--|
T Consensus 26 ~~~~W~~~-~~--~~~v~v~~~~~~---~~---~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~-----~~~vl 91 (214)
T 1ln1_A 26 AGADWQLL-VE--TSGISIYRLLDK---KT---GLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVK-----ELYEQ 91 (214)
T ss_dssp TTTTCEEE-EE--ETTEEEEEEEET---TT---TEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEE-----EEEEE
T ss_pred CCCCcEEE-EE--CCCeEEEEeccC---CC---CcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHHh-----hEEEe
Confidence 45689987 32 467999998752 21 244667778898 999999999999999999997432 22112
Q ss_pred ccCCCCCceEEEEEecccC-CCCCceEEEEcccc--CCCCc--E-EEEeecchhhhhhhhcCCCCCC--ccccCCccEEc
Q 003261 689 AKGQDHGNCVSLLRASAIN-ANQSSMLILQETCT--DAAGS--L-VVYAPVDIPAMHVVMNGGDSAY--VALLPSGFAIV 760 (835)
Q Consensus 689 a~g~~~gn~vsllr~~~~~-~~~~~~liLQes~t--d~sgs--~-vVyAPvD~~~m~~vm~G~D~~~--v~LLPSGF~I~ 760 (835)
-. .|+.|--......- ....+..++. ++. |..|. + ++.-.|+.+.+ ...+.+ +..+++||.|-
T Consensus 92 e~---~~~~i~~~~~~~p~p~~~RD~v~~~-~~~~~~~~g~~~~~i~~~Sv~~p~~-----P~~~~~VR~~~~~~~~~i~ 162 (214)
T 1ln1_A 92 EC---NGETVVYWEVKYPFPMSNRDYVYLR-QRRDLDMEGRKIHVILARSTSMPQL-----GERSGVIRVKQYKQSLAIE 162 (214)
T ss_dssp EE---TTEEEEEEEECCCTTSCCEEEEEEE-EEEEECSTTCCEEEEEEEECCBTTB-----CCCTTSEEECCEEEEEEEE
T ss_pred cc---CCCEEEEEEEEcCCCCCCceEEEEE-EEEecccCCCeEEEEEEecccCCCC-----CCCCCcEEEEEEEEEEEEe
Confidence 11 12333333333211 2233555555 343 33442 3 44556665542 112344 55789999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh--HhhhhhHHHHHHHHHhc
Q 003261 761 PDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET--VNNLISCTVQKIKAALQ 832 (835)
Q Consensus 761 Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t--v~~li~~tv~~Ik~Al~ 832 (835)
|.+. ++|.+|.-.|+=.... -+..+.. +...+-.++++++.++.
T Consensus 163 p~~~-----------------------~~t~v~~~~~~Dp~G~-----iP~~l~n~~~~~~~~~~l~~l~k~~~ 208 (214)
T 1ln1_A 163 SDGK-----------------------KGSKVFMYYFDNPGGQ-----IPSWLINWAAKNGVPNFLKDMARACQ 208 (214)
T ss_dssp ECSS-----------------------SSEEEEEEEEECCSSC-----CCHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cCCC-----------------------CceEEEEEEEECCCCc-----ccHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8421 4688888877765432 2223221 33344456777777653
No 93
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=96.05 E-value=0.17 Score=51.23 Aligned_cols=196 Identities=9% Similarity=0.096 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHHH-Hhhhcc
Q 003261 589 RSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLF-NFLRDE 667 (835)
Q Consensus 589 ~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf-~FLrde 667 (835)
+.-++.++.....|-.-+. ...+|... .. ..++|+|..+...+ .|.+. +...-+++||..|| ++|.|.
T Consensus 21 ~~y~~~~~~a~~~~~~~l~--~~~~W~~~-~~-~~~g~~vy~~~~~~-----~g~~~--k~~~~v~~~~~~v~~~~~~d~ 89 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILA--QEENWKFE-KN-NEYGDTVYTIEVPF-----HGKTF--ILKTFLPCPAELVYQEVILQP 89 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHT--TGGGCEEE-EE-CTTCCEEEEEEETT-----TEEEE--EEEEEESSCHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHHHhh--CCCCCEEE-Ee-cCCCCEEEEEecCC-----CCceE--EEEEEecCCHHHHHHHHHhCc
Confidence 3444444444444443332 24689877 32 12578898886521 23444 34444599999999 999999
Q ss_pred ccchhhhhhcCCCCcceeeecccCCCCCceEEEEEeccc---C-CCCCceEEEEccccCCCCcEEEEeecchhhhhhhhc
Q 003261 668 RLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI---N-ANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMN 743 (835)
Q Consensus 668 ~~R~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~---~-~~~~~~liLQes~td~sgs~vVyAPvD~~~m~~vm~ 743 (835)
..|.+||.... .++.+-+| +.++.| +..+... . ....+.+++.-...+..+-++++..|+-+.+-
T Consensus 90 ~~r~~Wd~~~~--~~~vle~~----~~~t~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~~~~~vi~~~Sv~~~~~P---- 158 (229)
T 1em2_A 90 ERMVLWNKTVT--ACQILQRV----EDNTLI-SYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSGIATSHSAKP---- 158 (229)
T ss_dssp HHHTTTCTTEE--EEEEEEEE----TTTEEE-EEEEECCBTTTTBCCEEEEEEEEEEECSSEEEEEEEECCCTTSC----
T ss_pred cchhhcccccc--eEEEEEec----CCCeEE-EEEEecCcCCCCcCCCeeEEEEEEEEcCCEEEEEEecccCCCCC----
Confidence 99999997432 13333333 222333 2222221 1 23456666665334433445566677766431
Q ss_pred CCCCCC--ccccCCccEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh-Hhhhh
Q 003261 744 GGDSAY--VALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLI 820 (835)
Q Consensus 744 G~D~~~--v~LLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t-v~~li 820 (835)
..+.+ +.++++||.|-|.... .++|.+|.-+|+=... .+..--+.. +...+
T Consensus 159 -~~~~~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G----~iP~~l~n~~~~~~~ 212 (229)
T 1em2_A 159 -PTHKYVRGENGPGGMIVLKSASN---------------------PRVCTFVWILNTDLKG----RLPRYLIHQSLAATM 212 (229)
T ss_dssp -CCTTSEECEECSEEEEEEECSSC---------------------TTCEEEEEEECEECCS----SSCHHHHHHHHHHHH
T ss_pred -CCCCCEeeeecccEEEEEecCCC---------------------CCcEEEEEEEEECCCC----CCCHHHHHHHHHHHH
Confidence 11222 4578999999983211 1468888877765443 222222222 23344
Q ss_pred hHHHHHHHHHhc
Q 003261 821 SCTVQKIKAALQ 832 (835)
Q Consensus 821 ~~tv~~Ik~Al~ 832 (835)
-.+++.++.++.
T Consensus 213 ~~~~~~Lr~~~~ 224 (229)
T 1em2_A 213 FEFAFHLRQRIS 224 (229)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 457777777764
No 94
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=95.90 E-value=0.15 Score=52.61 Aligned_cols=175 Identities=19% Similarity=0.269 Sum_probs=100.8
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCceEEEEEEeeecccChhHH-HHhhhccccchhhhhhcCCCCcceeeec
Q 003261 610 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRL-FNFLRDERLRSEWDILSNGGPMQEMAHI 688 (835)
Q Consensus 610 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~v-f~FLrde~~R~eWd~ls~G~~vqe~~~i 688 (835)
...+|... . ..++|+|.+++.. +|.+ +..-++..-++.+|..+ +++|.| |.+||...- .++.+-.|
T Consensus 48 ~~~gW~~~-~--~~~gi~V~~k~~~--~~~~---~~~~K~~~~v~~~~~~v~~~ll~d---r~~Wd~~~~--~~~vle~i 114 (237)
T 2pso_A 48 KFKGWVTC-S--STDNTDLAFKKVG--DGNP---LKLWKASVEVEAPPSVVLNRVLRE---RHLWDEDFV--QWKVVETL 114 (237)
T ss_dssp HCCSCEEE-C--CSSSCEEEEECCC--SSCC---CCEEEEEEEESSCHHHHHHHHHHC---GGGTCTTBC--CCEEEEEE
T ss_pred CCCCCEEE-e--cCCCeEEEEEEcC--CCCC---cEEEEEEEEEcCChHHHHHHHHhh---hhhHHhhhc--eEEEEEEc
Confidence 45579877 3 3578999999852 2332 22446677778777665 567777 999997543 23444444
Q ss_pred ccCCCCCceEEEEEecccC-CCCCceEEEEccccC-CCCcEEE-EeecchhhhhhhhcCCCCCCccccCCccEEcCCCCC
Q 003261 689 AKGQDHGNCVSLLRASAIN-ANQSSMLILQETCTD-AAGSLVV-YAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPD 765 (835)
Q Consensus 689 a~g~~~gn~vsllr~~~~~-~~~~~~liLQes~td-~sgs~vV-yAPvD~~~m~~vm~G~D~~~v~LLPSGF~I~Pdg~~ 765 (835)
. ..+.|--...+... ....+.++|.-...| ..|++|| ...|+-+.+-. . |. =-+..+++||.|-|.+.
T Consensus 115 d----~~~~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~-~-g~--VR~~~~~~g~~i~P~~~- 185 (237)
T 2pso_A 115 D----RQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQL-L-GG--VRAVVMDSQYLIEPCGS- 185 (237)
T ss_dssp E----TTEEEEEEEECCSSSCCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCC-C-SS--EECCEEEEEEEEEECST-
T ss_pred C----CCcEEEEEEecCCCCcCCeEEEEEEEEEEECCCCEEEEEEEcccCCCCCC-C-Cc--EEEEEeccEEEEEECCC-
Confidence 2 23334333333222 234566666653345 3466665 44566554311 1 21 23568899999999531
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhH-HhHhhhhhHHHHHHHHHhcc
Q 003261 766 SRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESV-ETVNNLISCTVQKIKAALQC 833 (835)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv-~tv~~li~~tv~~Ik~Al~~ 833 (835)
++|.||.-+|+=.... -+..+ ..+...+..++.++|.++..
T Consensus 186 ----------------------~~t~vt~~~~~Dp~G~-----iP~~ln~~~~~~~~~~l~~LR~~~~~ 227 (237)
T 2pso_A 186 ----------------------GKSRLTHICRIDLKGH-----SPEWYSKGFGHLCAAEVARIRNSFQP 227 (237)
T ss_dssp ----------------------TCEEEEEEEEECCSSS-----CTTTTTTHHHHHHHHHHHHHHHTTSC
T ss_pred ----------------------CCEEEEEEEEeCCCCC-----chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689988877765533 12223 11334444588899888753
No 95
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=95.61 E-value=0.12 Score=46.51 Aligned_cols=140 Identities=8% Similarity=-0.081 Sum_probs=81.5
Q ss_pred ceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceec
Q 003261 400 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 479 (835)
Q Consensus 400 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~ 479 (835)
.+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..+. +|.. ....+.. + +.+.-+..|+....+
T Consensus 6 ~~~~i~ap~~~V~~~l~d~~~~~~w~p~~----~~~~~~~~~~----~g~~--~~~~~~~--~--g~~~~~~~~~~~~~~ 71 (147)
T 2d4r_A 6 AERYIPAPPERVYRLAKDLEGLKPYLKEV----ESLEVVAREG----ARTR--SRWVAVA--M--GKKVRWLEEEEWDDE 71 (147)
T ss_dssp EEEEESSCHHHHHHHHHCHHHHGGGCTTE----EEEEEEEEET----TEEE--EEEEEEE--T--TEEEEEEEEEEEETT
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhcccc----cEEEEEEeCC----CccE--EEEEEEe--C--CceEEEEEEEEEcCC
Confidence 34567778899999999999999998874 4456665432 2321 1111222 1 223334455543322
Q ss_pred CCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHH
Q 003261 480 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 559 (835)
Q Consensus 480 ~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlat 559 (835)
+...+. . .+++ +. ..+.. -.-+++.++| |+|+|..+.+..-..+..++.+++..-+.=+.++.++.
T Consensus 72 ~~~i~~-~-~~~g----~~-~~~~~------~~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 137 (147)
T 2d4r_A 72 NLRNRF-F-SPEG----DF-DRYEG------TWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKG 137 (147)
T ss_dssp TTEEEE-E-EEEE----SC-SEEEE------EEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEE-E-eccC----Ch-hheEE------EEEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 1 1121 10 00111 1235677888 99999998887644455566666655555678889999
Q ss_pred HHHHHHHH
Q 003261 560 LQRQCECL 567 (835)
Q Consensus 560 LqRqcerl 567 (835)
|.+.||..
T Consensus 138 lk~~~e~~ 145 (147)
T 2d4r_A 138 LEERVLAA 145 (147)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99988874
No 96
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=93.90 E-value=0.96 Score=47.51 Aligned_cols=181 Identities=17% Similarity=0.243 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCC-cc-c-CchhhHHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEE
Q 003261 553 AQRWVATLQRQCECLAILMSTSVSARDH-TA-I-TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVM 629 (835)
Q Consensus 553 A~rWlatLqRqcerla~l~~~~i~~~d~-~v-i-~~~Gr~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~ 629 (835)
-||.-.++.|-==||.-- .|-+... .+ . .++-+.+=+.|+.-.+.+...- ....+|... . ..++|+|.
T Consensus 10 ~~r~~~a~ar~~~r~~r~---~~~~~~~~~~p~~~~w~~~~~~~l~~~n~~al~~l---~~~~gW~~~-~--~~~gv~Vy 80 (258)
T 3fo5_A 10 ERRYREASARKKIRLDRK---YIVSCKQTEVPLSVPWDPSNQVYLSYNNVSSLKML---VAKDNWVLS-S--EISQVRLY 80 (258)
T ss_dssp CHHHHHHHHHHHHHHHHH---TCSCCCTTTSCSEEECCGGGHHHHHHHHHHHHHHH---HTCSCCEEE-E--EETTEEEE
T ss_pred hhhhhhhhhhhhhcccce---EEEEcccCCCCcccccCcccceecccCCHHHHHhh---hccCCCEEE-e--cCCCeEEE
Confidence 356656665544444331 3322222 22 2 3466666777776666544422 246899976 3 25789999
Q ss_pred EecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecccCCCCCceEEEEEeccc---
Q 003261 630 TRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI--- 706 (835)
Q Consensus 630 ~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~--- 706 (835)
++.. +| .++-+...-+++||+.||++|.|...|.+||...- ..+.+-+|. ..+.| .+....
T Consensus 81 ~~~~---~~-----~l~~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~~--~~~vle~id----~~~iv--Y~~~~p~~~ 144 (258)
T 3fo5_A 81 TLED---DK-----FLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYR--SVELVQQVD----EDDAI--YHVTSPALG 144 (258)
T ss_dssp EEEC---SS-----CEEEEEEEEESSCHHHHHHHHHCGGGGGGTCTTCC--EEEEEEEEE----TTEEE--EEEEECCCT
T ss_pred EEEC---CC-----ceEEEEEEEEeCCHHHHHHHHhCchhHhHhhhhcc--EEEEEEEcC----CCeEE--EEEecCCcc
Confidence 8642 22 35557777789999999999999999999997432 233444442 12333 343211
Q ss_pred CC-CCCceEEEEcccc-CCCCc-EEEE-eecchhhhhhhhcCCCCCCc--cccCCccEEcCCC
Q 003261 707 NA-NQSSMLILQETCT-DAAGS-LVVY-APVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDG 763 (835)
Q Consensus 707 ~~-~~~~~liLQes~t-d~sgs-~vVy-APvD~~~m~~vm~G~D~~~v--~LLPSGF~I~Pdg 763 (835)
.. ...+..+|.-.-+ +..|. +||- -.|+.+.+- .-+.+| ..+|+||.|-|.|
T Consensus 145 ~~v~~RDFV~lr~~r~~~~~G~~yvi~~~SV~hp~~P-----p~~g~VR~~~~~sg~~I~P~~ 202 (258)
T 3fo5_A 145 GHTKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHR-----ETPEYRRGETLCSGFCLWREG 202 (258)
T ss_dssp TCSSCEEEEEEEEEECCSSTTCCEEEEEEEEECTTSC-----CCTTSEECCCSSEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEeccCCCCEEEEEEEeccCCCCC-----CCCCCEEEEEcCcEEEEEECC
Confidence 11 2235555554223 23453 5443 345544321 123344 6899999999954
No 97
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=92.30 E-value=2.1 Score=41.33 Aligned_cols=142 Identities=8% Similarity=0.040 Sum_probs=80.7
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeec--ccccccccceeeEEeeec
Q 003261 399 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ--VLSPLVPVREVNFLRFCK 476 (835)
Q Consensus 399 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~--v~SPLvp~Re~~flRyck 476 (835)
..+.+|.-.+.++-+++-|.++|-+.||. |...+|++.+ |. .+.+.|. +---- .++-+..|+..
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~----~~~~~vl~~~------~~--~~~~rl~~~~~~~G--~~~~~ts~~~~ 71 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSE----YASVEVLGRD------DD--KVTFRLTMHPDADG--KVWSWVSERVA 71 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSS----EEEEEEEEEC------SS--EEEEEEEECCCTTS--CCCEEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhC----ceEEEEEecC------CC--EEEEEEEEEeccCc--eEEEEEEEEEE
Confidence 45677888999999999999999999998 6778888754 11 2334433 32211 34444566643
Q ss_pred eecCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHH
Q 003261 477 QHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRW 556 (835)
Q Consensus 477 q~~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rW 556 (835)
. .++..+ +..+ +.+++ | +.+=...-+.+.++| |+|+|.-+.++++.....+ +.+...+-=..+.-
T Consensus 72 d-~~~~~I--~~~~--~~~gP----f---~~l~g~W~f~p~~~g-t~V~~~~df~~~~~~p~~~--~~~~~~~~~~~~~~ 136 (159)
T 3tl1_A 72 D-PVTRTV--RAQR--VETGP----F---QYMNIVWEYAETAEG-TVMRWTQDFAMKPDAPVDD--AWMTDNINRNSRTQ 136 (159)
T ss_dssp E-TTTTEE--EEEE--SSCTT----E---EEEEEEEEEEEETTE-EEEEEEEEEEECTTCSSCH--HHHHHHHHHHHHHH
T ss_pred c-CCCCEE--EEEE--ccCCC----h---hhccCEEEEEECCCC-EEEEEEEEEEecCCCCCCH--HHHHHHHHhhHHHH
Confidence 2 233222 2221 11223 2 233334456777774 9999999999976521111 00111111112334
Q ss_pred HHHHHHHHHHHHH
Q 003261 557 VATLQRQCECLAI 569 (835)
Q Consensus 557 latLqRqcerla~ 569 (835)
|+.|++.+|+.+.
T Consensus 137 L~~lK~~~E~~~~ 149 (159)
T 3tl1_A 137 MALIRDRIEQAAG 149 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh
Confidence 7778777777664
No 98
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=91.76 E-value=2.1 Score=41.29 Aligned_cols=145 Identities=14% Similarity=0.047 Sum_probs=83.3
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeecee
Q 003261 399 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 478 (835)
Q Consensus 399 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~ 478 (835)
..+.+|.-.+.++-+.+-|.++|-+.+|. |..++|+..+. ++ +.+++.+.-. ..++-|.-|+..+-
T Consensus 8 ~~si~I~ap~~~V~~~v~D~~~~p~~~P~----~~~~~v~~~~~----~~----~~~~~~~~~~--G~~~~~~s~~~~~~ 73 (172)
T 3tfz_A 8 EHTVTVAAPADLVWEVLADVLGYADIFPP----TEKVEILEEGQ----GY----QVVRLHVDVA--GEINTWTSRRDLDP 73 (172)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGHHHHCSS----EEEEEEEEEET----TE----EEEEEEEEET--TEEEEEEEEEEEET
T ss_pred EEEEEeCCCHHHHHHHHHhHHHHHhhCcc----cceEEEEecCC----CE----EEEEEEEecC--CEEEEEEEEEEEeC
Confidence 45667788899999999999999999999 56777776432 11 3344443222 22343444444332
Q ss_pred cCCeEEEEEEeccCccCCCCCCCccceeecCCcce-EeecCCCccEEEEEEeeeeccccccccchhhhccc---------
Q 003261 479 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCV-VQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISG--------- 548 (835)
Q Consensus 479 ~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGcl-Iq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg--------- 548 (835)
++.. +.. ..++. +++ |. .+ .|.. +++.++|.|+|+|.-++++....+..++.++..-.
T Consensus 74 ~~~~-i~~-~~~~~--~gp----f~---~~-~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~ 141 (172)
T 3tfz_A 74 ARRV-IAY-RQLET--API----VG---HM-SGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAV 141 (172)
T ss_dssp TTTE-EEE-EEEEC--CTT----EE---EE-EEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHH
T ss_pred CCCE-EEE-EEeeC--CCC----hh---hc-EEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHH
Confidence 2222 111 11110 111 10 00 1222 56666789999999999998877777777654211
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 003261 549 MGFGAQRWVATLQRQCECLAI 569 (835)
Q Consensus 549 ~afGA~rWlatLqRqcerla~ 569 (835)
+.=+.+.-|+.|.+.+|+.+.
T Consensus 142 l~~~~~~~L~~lk~~aE~~~~ 162 (172)
T 3tfz_A 142 VERNSVADLNAVLGEAERRVR 162 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHHh
Confidence 122233456677777776654
No 99
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=90.97 E-value=0.97 Score=42.11 Aligned_cols=141 Identities=15% Similarity=0.154 Sum_probs=83.9
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeecee
Q 003261 399 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 478 (835)
Q Consensus 399 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~ 478 (835)
+.+..|...+.++-+.+.|.++|-+.+|.+ ..++|+..+..|. |. -+.+++.+-- -+.++-|..|+..+-
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~----~~~~v~~~~~~~g--~~--~~~~~~~~~~--~~~~~~~~~~v~~~~ 74 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVPWI----TGMRTWNGRVDGA--VS--TVDAEAQVGF--SFLREKFATRVRRDK 74 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCSSC----CCCCEEEEEEETT--EE--EEEEEEECST--TSSCCEEEEEEEEET
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCCCc----CeeEEEEecCCCC--Cc--eEEEEEEEEe--cceeEEEEEEEEEcC
Confidence 345677788999999999999999999984 5556665432211 11 2455665522 355666777887543
Q ss_pred cCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHH
Q 003261 479 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 558 (835)
Q Consensus 479 ~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWla 558 (835)
.+ ..|.-..+++ +.. .+...++ +++.++| |+|++.-++|.... |+..+...-+.-.+++.+.
T Consensus 75 ~~--~~i~~~~~~G----~f~-~~~g~w~------f~~~~~g-t~v~~~~~~~~~~~----l~~~l~~~~~~~~~~~~~~ 136 (148)
T 1t17_A 75 DA--RSIDVSLLYG----PFK-RLNNGWR------FMPEGDA-TRVEFVIEFAFKSA----LLDAMLAANVDRAAGKLIA 136 (148)
T ss_dssp TT--CEEEEEESST----TSS-CEEEEEE------EEEETTE-EEEEEEEEECCSCH----HHHHHHHHHHHHHHHHHHH
T ss_pred CC--cEEEEEECCC----Chh-ccEEEEE------EEECCCC-eEEEEEEEEEECcH----HHHHHHHHHHHHHHHHHHH
Confidence 33 2233333442 210 0122333 3567778 99999988887522 3334443333345677788
Q ss_pred HHHHHHHHH
Q 003261 559 TLQRQCECL 567 (835)
Q Consensus 559 tLqRqcerl 567 (835)
++.+.|+.+
T Consensus 137 ~f~~r~~~~ 145 (148)
T 1t17_A 137 CFEARAQQL 145 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777654
No 100
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=90.90 E-value=3.9 Score=39.90 Aligned_cols=145 Identities=10% Similarity=0.055 Sum_probs=79.8
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeecee
Q 003261 399 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 478 (835)
Q Consensus 399 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~ 478 (835)
..+.+|.-.+.++-+.+-|.++|-+.||. |...+|+..+. + -..+...+++..--. .++|..-|.+ .
T Consensus 6 ~~si~I~a~~~~v~~lv~Dv~~~p~w~p~----~~~~~~~~~~~-----~-~~~~~l~~~~~~~G~-~~~~ts~~~~--d 72 (169)
T 3tvq_A 6 DNSIVVNAPFELVWDVTNDIEAWPELFSE----YAEAEILRQDG-----D-GFDFRLKTRPDANGR-VWEWVSHRVP--D 72 (169)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCTT----EEEEEEEEEET-----T-EEEEEEEECCCTTSC-CCEEEEEEEE--E
T ss_pred EEEEEecCCHHHHHHHHHhhhHHHHHHhh----eeEEEEEecCC-----C-EEEEEEEEEecCCCe-EEEEEEEEEE--c
Confidence 44667777888999999999999999999 56667776432 1 111222222332221 2233332321 1
Q ss_pred cCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHH
Q 003261 479 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 558 (835)
Q Consensus 479 ~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWla 558 (835)
.++..+.... +.++| | +.+=...-+.+.++| |+|+|.-+.++++... +-.+.+...+.=..+..|+
T Consensus 73 ~~~~~I~~~~----l~~gP----f---~~~~g~W~f~p~~~g-t~V~~~~df~~~~~~p--~~~~~~~~av~~~~~~~L~ 138 (169)
T 3tvq_A 73 KGSRTVRAHR----VETGP----F---AYMNLHWTYRAVAGG-TEMRWVQEFDMKPGAP--FDNAHMTAHLNTTTRANME 138 (169)
T ss_dssp GGGTEEEEEE----SSCTT----E---EEEEEEEEEEEETTE-EEEEEEEEEEECTTCS--SCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEE----cCCCC----h---hheeeEEEEEECCCC-EEEEEEEEEEecCCCc--ccHHHHHHHHHhhHHHHHH
Confidence 2222221111 11122 2 223234557888888 9999999999875421 1111122222222345689
Q ss_pred HHHHHHHHHHHh
Q 003261 559 TLQRQCECLAIL 570 (835)
Q Consensus 559 tLqRqcerla~l 570 (835)
.|++.+|+.+..
T Consensus 139 ~LK~~aE~~~~~ 150 (169)
T 3tvq_A 139 RIKKIIEDRHRE 150 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhhhhhh
Confidence 999999988764
No 101
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=89.10 E-value=4.6 Score=41.41 Aligned_cols=173 Identities=14% Similarity=0.180 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhcccccCCCCCceeccCCCCCCceEEEEecCCCCCCCCCceEE-EEEEeeecc-cChhHHHHhhhccc
Q 003261 591 MLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVL-SAATSVWLP-VSPQRLFNFLRDER 668 (835)
Q Consensus 591 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl-~A~tS~wLp-v~p~~vf~FLrde~ 668 (835)
+-++.+..+..+-..+ ....+|... . ..++|+|..++..+ . |.++ .-++..-++ ++|+.||++|.|..
T Consensus 28 ~~~~~~e~l~~~~~~~--~~~~~W~~~-~--~~~gv~vy~~~~~~-~----g~~~~~~K~~~~~~~~~~~~v~~~l~d~~ 97 (255)
T 2e3n_A 28 VEEMVQNHMTYSLQDV--GGDANWQLV-V--EEGEMKVYRREVEE-N----GIVLDPLKATHAVKGVTGHEVCNYFWNVD 97 (255)
T ss_dssp HHHHHHHHHHHTTSCC--TTCTTEEEE-E--EETTEEEEEECCEE-T----TEECCCEEEEEEEETCCHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHhhc--CCCCCcEEE-E--eCCCEEEEEEEcCC-C----CceeeeEEEEEEEcCCCHHHHHHHHhCcc
Confidence 4444444444444433 234689977 3 24679999988632 2 3221 123344456 99999999999999
Q ss_pred cchhhhhhcCCCCcceeeecccCCCCCceEEEEEeccc-CCCCCceEEEEccccC----CC---CcEEEEeecchhhhhh
Q 003261 669 LRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI-NANQSSMLILQETCTD----AA---GSLVVYAPVDIPAMHV 740 (835)
Q Consensus 669 ~R~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~-~~~~~~~liLQes~td----~s---gs~vVyAPvD~~~m~~ 740 (835)
.|.+||...- ..+.+-.| +.++.|--...... .-...+..++.....+ .. .-+++.-.|+-+.+-
T Consensus 98 ~r~~Wd~~~~--~~~vle~i----~~~~~i~y~~~~~p~p~s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~~~P- 170 (255)
T 2e3n_A 98 VRNDWETTIE--NFHVVETL----ADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAP- 170 (255)
T ss_dssp GHHHHCCSEE--EEEEEEEE----ETTEEEEEEEECCCTTSCCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCTTSC-
T ss_pred hHhhhhhhcc--eeEEEEEc----CCCCEEEEEEeecCCCcCCceeEEEEEEEeccccccCCCCEEEEEEeccCCCCCC-
Confidence 9999996421 12222222 11222322222221 2234566666643332 22 233444456544321
Q ss_pred hhcCCCCCCcc-----ccCCccEEcCC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeeccc
Q 003261 741 VMNGGDSAYVA-----LLPSGFAIVPD-GP-DSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVN 801 (835)
Q Consensus 741 vm~G~D~~~v~-----LLPSGF~I~Pd-g~-~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~ 801 (835)
..+.+|- .|.+||.|.|. |. .... ..++|.+|.-.|+=..
T Consensus 171 ----~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~-----------------~~~~t~vt~~~~~Dp~ 217 (255)
T 2e3n_A 171 ----LNNRCVRAKINVAMICQTLVSPPEGNQEISR-----------------DNILCKITYVANVNPG 217 (255)
T ss_dssp ----CCSSSEECEEEEEEEEEEEEC---CCCCCCG-----------------GGEEEEEEEEEEEECS
T ss_pred ----CCCCCEEEEEEeeeeeeeEeccCCCCccccc-----------------CCCcEEEEEEEEeCCC
Confidence 1122222 36789999883 22 1100 1257888888777554
No 102
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=84.53 E-value=14 Score=35.13 Aligned_cols=140 Identities=14% Similarity=0.043 Sum_probs=80.8
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeecee
Q 003261 399 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 478 (835)
Q Consensus 399 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~ 478 (835)
..+.+|.-.+.++-+.+.|.++|...||..+.- +-.. +|..+.+.+++.+-- ...|+-|..||...-
T Consensus 10 ~~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~----~~~~-------~~~~~~~~a~l~vg~--~~~~~~~~s~~~~~~ 76 (161)
T 3p9v_A 10 NRDLEIPASYDEVFDLLADVPKSASHFPKVDKL----VDLG-------NNAYRWEMEKVGVDK--HAIQSVYACTYHADK 76 (161)
T ss_dssp EEEEEESSCHHHHHHHHTCHHHHHTTSTTEEEE----EEEE-------TTEEEEEECCBSSGG--GCBCCEEEEEEEEET
T ss_pred EEEEEEcCCHHHHHHHHhChhhhHhhCCCeEEE----EEcC-------CCceEEEEEEEeeee--EEEEEEEEEEEEEcC
Confidence 346678889999999999999999999986553 1111 233444445665433 234888889987654
Q ss_pred cCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHH
Q 003261 479 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 558 (835)
Q Consensus 479 ~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWla 558 (835)
++. .+ +..+. +++ +. +.+-.-.-+++.++|.|+|+|.-+.|.. -.+..++..++..-+--.+++-+.
T Consensus 77 ~~~-~I--~~~~~---~g~----~~--~~l~g~w~f~p~~~g~t~V~~~~~~e~~-~pl~~ll~~~~~~~~~~~~~~~v~ 143 (161)
T 3p9v_A 77 EAG-KI--TWSPI---KGE----GN--GVVSGSWTLSAKGDNATAVKFQTSAELT-VPLPSLLKLAISPVIKHEFNSLVD 143 (161)
T ss_dssp TTT-EE--EEEEC---TTS----TT--EEEEEEEEEEESSSSCEEEEEEEEEEEE-ECSCGGGHHHHHHHHHHHHHHHHH
T ss_pred CCC-EE--EEEEe---cCc----cc--eeEEEEEEEEECCCCeEEEEEEEEEEEc-CcchHHHHHHHHHHHHHHHHHHHH
Confidence 333 22 22221 122 10 1111123357778888999999888886 123334443332222334566666
Q ss_pred HHHHHH
Q 003261 559 TLQRQC 564 (835)
Q Consensus 559 tLqRqc 564 (835)
+..+-+
T Consensus 144 af~~ra 149 (161)
T 3p9v_A 144 TYMANL 149 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 103
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.21 E-value=0.25 Score=42.22 Aligned_cols=40 Identities=33% Similarity=0.408 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecc
Q 003261 143 QQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 182 (835)
Q Consensus 143 ~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQ 182 (835)
.-.+.|+.+|+..+.+.......|+.+.+|+..|||-||-
T Consensus 16 ~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 16 PDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred CcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 3457899999999999999999999999999999999995
No 104
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=80.12 E-value=0.29 Score=42.96 Aligned_cols=42 Identities=10% Similarity=0.232 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecc
Q 003261 138 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 182 (835)
Q Consensus 138 tr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQ 182 (835)
.+||.++....-..+.... .....++|+.+|+++..|..|.+
T Consensus 4 ~~ys~e~k~~~v~~~~~~~---g~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSD---GASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGG---GSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC---CChHHHHHHHHCcCHHHHHHHHH
Confidence 4688887765555553220 12366899999999999999964
No 105
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=77.34 E-value=3.6 Score=36.10 Aligned_cols=55 Identities=27% Similarity=0.441 Sum_probs=33.7
Q ss_pred HHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHH----HHhhhhhh
Q 003261 194 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGK 262 (835)
Q Consensus 194 r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~----r~~~~~~~ 262 (835)
-..-..++-+.+.|+.+|..+.++.. +..-....|..||.+||+|.. |++++.+|
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~--------------e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQ--------------NAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445556666666666666655443 111133458899999999985 66666655
No 106
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=76.79 E-value=47 Score=30.70 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=63.5
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeE--Eeeecee
Q 003261 401 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF--LRFCKQH 478 (835)
Q Consensus 401 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~f--lRyckq~ 478 (835)
+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..| . ....+.+. +-+.+.-+. ++|...-
T Consensus 8 ~~~i~ap~e~Vw~~l~D~e~~~~w~p~~----~~~~~~~~~-------~---~~~~~~~~--~g~~~~~~~~~~~~~~~~ 71 (162)
T 2pcs_A 8 SIELKGTVEEVWSKLMDPSILSKCIMGC----KSLELIGED-------K---YKADLQIG--IAAVKGKYDAIIEVTDIK 71 (162)
T ss_dssp EEEEESCHHHHHHHHTCHHHHHHHSTTE----EEEEEEETT-------E---EEEEEEEC--CGGGCEEEEEEEEEEEEE
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhCCCc----eEeEEeCCC-------e---EEEEEEEE--eeeEEEEEEEEEEEEecC
Confidence 4567778999999999999999998874 566666421 1 11222221 112222222 2443334
Q ss_pred cCCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhh
Q 003261 479 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLI 545 (835)
Q Consensus 479 ~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~ 545 (835)
....|++.-..-+. .+ +.+. =--+-+.+..+|.|+|+|.-.+++... +..+..+++
T Consensus 72 ~~~~~~~~~~~~~~---~~----~~~~---~~~~~l~~~~~~gT~v~~~~~~~~~g~-l~~~~~~l~ 127 (162)
T 2pcs_A 72 PPYHYKLLVNGEGG---PG----FVNA---EGVIDLTPINDECTQLTYTYSAEVGGK-VAAIGQRML 127 (162)
T ss_dssp TTTEEEEEEEEEET---TE----EEEE---EEEEEEEESSSSEEEEEEEEEEEEESG-GGGGCHHHH
T ss_pred CCcEEEEEEEecCC---Cc----cEEE---EEEEEEEecCCCcEEEEEEEEEEECCC-HHHhhHHHH
Confidence 44555544332221 00 1111 111335666778899999877776433 344555555
No 107
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=67.28 E-value=11 Score=31.33 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=31.1
Q ss_pred HHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHH
Q 003261 193 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 254 (835)
Q Consensus 193 ~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~ 254 (835)
++.....+..+.+.|..+|..|+..+ ..|..|+..||+-+.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i---------------------~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERA---------------------DSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHh
Confidence 44556778888899999998888744 468888888887653
No 108
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=66.64 E-value=2 Score=44.94 Aligned_cols=16 Identities=44% Similarity=0.569 Sum_probs=10.6
Q ss_pred hhhHHHHhhHhhHHHH
Q 003261 238 EEQHLRIENARLKDEL 253 (835)
Q Consensus 238 ~~q~L~~ENa~Lk~el 253 (835)
+.++|..||++||+.|
T Consensus 44 ~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 44 EVADLKKENKDLKESL 59 (255)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445777888877754
No 109
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=58.88 E-value=13 Score=33.15 Aligned_cols=67 Identities=21% Similarity=0.167 Sum_probs=42.6
Q ss_pred cccceeEEeecchhhHHHHHHHHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhH
Q 003261 171 CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLK 250 (835)
Q Consensus 171 gLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk 250 (835)
||+..+|.-|=|-||+-.=+.........-.++...|..++..+.. +.++|+.||++++
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~---------------------e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQ---------------------QVEQLKQEVSRLA 75 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Confidence 6666666666666665544444444444444555666666665554 4567888999999
Q ss_pred HHHHHHhh
Q 003261 251 DELDRVCA 258 (835)
Q Consensus 251 ~el~r~~~ 258 (835)
.|++.+..
T Consensus 76 ~e~d~~k~ 83 (90)
T 2wt7_B 76 RERDAYKV 83 (90)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887654
No 110
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=58.17 E-value=17 Score=32.30 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHhhhHHHHHhHHHHHhhHhHHh
Q 003261 185 RTQMKTQLERHENSLLRQENDKLRAENMSIRD 216 (835)
Q Consensus 185 RaK~Kkk~~r~e~~~l~~en~~L~~en~~l~e 216 (835)
|++.|+++.. ..+..+.+.|..||..|+.
T Consensus 29 rSR~krk~r~---~e~~~r~~~Le~EN~~Lr~ 57 (87)
T 1hjb_A 29 KSRDKAKMRN---LETQHKVLELTAENERLQK 57 (87)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4444443332 3345566666666665554
No 111
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=55.85 E-value=29 Score=28.29 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=28.8
Q ss_pred HHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHH
Q 003261 193 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 253 (835)
Q Consensus 193 ~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el 253 (835)
+......+..+.+.|..+|..|...+ ..|+.|+..|+..|
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i---------------------~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEV---------------------TLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHh
Confidence 34456677888888888888887633 46777888877754
No 112
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=52.59 E-value=17 Score=29.78 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=23.3
Q ss_pred HHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHH
Q 003261 194 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 253 (835)
Q Consensus 194 r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el 253 (835)
......+..+.+.|..+|..|...+ ..|+.|++.||+.|
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v---------------------~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTA---------------------NMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Confidence 3444566777777777777776533 35666777776654
No 113
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=47.31 E-value=11 Score=25.92 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=14.6
Q ss_pred hHHHHhhHhhHHHHHHHh
Q 003261 240 QHLRIENARLKDELDRVC 257 (835)
Q Consensus 240 q~L~~ENa~Lk~el~r~~ 257 (835)
++|...|+|||+|+..+.
T Consensus 3 rrlkqknarlkqeiaale 20 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALE 20 (28)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHH
Confidence 468889999999987654
No 114
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}
Probab=43.62 E-value=91 Score=29.76 Aligned_cols=112 Identities=12% Similarity=0.163 Sum_probs=60.4
Q ss_pred ceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceec
Q 003261 400 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 479 (835)
Q Consensus 400 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~ 479 (835)
.+..|...+.++-++|.|-..| +-+|.++..+ +++ .|.+|+.-|++..+ . . ..+| .++.|-...-
T Consensus 6 ~si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~---e~~-eg~~~~~vGsvR~~--g----g---~v~E-rl~~~D~~~~ 70 (160)
T 3p51_A 6 NSIVVDAPVERVWSRIRNFHDF-SWAPSLIKSC---KKV-GGGGGYSVGARRLL--N----G---EFLD-TLIAYSEIER 70 (160)
T ss_dssp EEEEESSCHHHHHHHHCCTTCC-TTCTTTCCCE---EEE-SSCCTTCTTCEEEE--T----T---TEEE-EEEEEETTTT
T ss_pred EEEEECCCHHHHHHHHhCcCCC-eEccCceEEE---EEE-ecCCCCCCCCEEEE--C----C---EEEE-EEEEEcCCCc
Confidence 3456677889999999999999 9999885533 333 34444445787665 1 1 1233 2232321100
Q ss_pred CCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecC-CCccEEEEEEeeeecc
Q 003261 480 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP-NGYSKVTWVEHAEYDE 534 (835)
Q Consensus 480 ~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~-nG~skVtwVeH~e~d~ 534 (835)
-=.|-|++-.+-. .. . ..+..=+=.-+.+.+ +|.|.|+|--.++.++
T Consensus 71 ~~sY~ii~g~l~~---~~--~---~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~ 118 (160)
T 3p51_A 71 RIMYSMDEGPSPV---SS--G---EIYNYVGNLHLLPVTIDDTTFVEWSGSWESAS 118 (160)
T ss_dssp EEEEEEEECSTTS---ST--T---TEEEEEEEEEEEEETTTTEEEEEEEEEEEESC
T ss_pred EEEEEEecCCCcc---cc--c---ceeEEEEEEEEEEecCCCCEEEEEEEEEEeCH
Confidence 1145555421100 00 0 011111222245555 7899999998888764
No 115
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=41.70 E-value=39 Score=29.33 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=8.0
Q ss_pred HHHHhHHHHHhhHhHH
Q 003261 200 LRQENDKLRAENMSIR 215 (835)
Q Consensus 200 l~~en~~L~~en~~l~ 215 (835)
+....+.|..||..|+
T Consensus 41 ~~~r~~~L~~eN~~L~ 56 (78)
T 1gu4_A 41 TQHKVLELTAENERLQ 56 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555554444
No 116
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8
Probab=41.37 E-value=17 Score=35.02 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=27.8
Q ss_pred EEEEeeecccChhHHHHhhhccccchhhhh
Q 003261 646 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 675 (835)
Q Consensus 646 ~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 675 (835)
+...|+-+..||+.||+|++|...-.+|.-
T Consensus 28 ~~~~si~I~ap~eeVy~~~~D~e~lP~W~~ 57 (156)
T 2qpv_A 28 SRIIHLSVEKPWAEVYDFAANPGNMPRWAA 57 (156)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTCG
T ss_pred ceEEEEEEcCCHHHHHHHHHChhhHHHHHH
Confidence 568899999999999999999999999985
No 117
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=40.19 E-value=66 Score=26.41 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=17.9
Q ss_pred HHHhhhHHHHHhHHHHHhhHhHHhhh
Q 003261 193 ERHENSLLRQENDKLRAENMSIRDAM 218 (835)
Q Consensus 193 ~r~e~~~l~~en~~L~~en~~l~ea~ 218 (835)
+......|..+.+.|..+|..|+..+
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777888888887777644
No 118
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=38.00 E-value=28 Score=31.27 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCc
Q 003261 220 NPICTNCGGPAI 231 (835)
Q Consensus 220 ~~~C~~Cggp~~ 231 (835)
...||-||.+..
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 557999999754
No 119
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=36.20 E-value=17 Score=32.15 Aligned_cols=29 Identities=14% Similarity=0.361 Sum_probs=25.4
Q ss_pred EEEeeecccChhHHHHhhhccccchhhhh
Q 003261 647 AATSVWLPVSPQRLFNFLRDERLRSEWDI 675 (835)
Q Consensus 647 A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 675 (835)
...+..++.||+.||++|.|..+..+|.-
T Consensus 4 ~~~~~~i~ap~~~V~~~l~d~~~~~~w~p 32 (147)
T 2d4r_A 4 VRAERYIPAPPERVYRLAKDLEGLKPYLK 32 (147)
T ss_dssp EEEEEEESSCHHHHHHHHHCHHHHGGGCT
T ss_pred EEEEEEeCCCHHHHHHHHhChhhhhhhcc
Confidence 34678899999999999999999999963
No 120
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=34.77 E-value=71 Score=27.12 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=5.4
Q ss_pred HhhHhhHHHHHHH
Q 003261 244 IENARLKDELDRV 256 (835)
Q Consensus 244 ~ENa~Lk~el~r~ 256 (835)
.||..|++++..+
T Consensus 50 ~en~~Lr~~i~~L 62 (70)
T 1gd2_E 50 LENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 121
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=34.39 E-value=2.6e+02 Score=25.12 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=23.4
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccc
Q 003261 401 TGMVIINSLALVETLMDPNRWAEMFPCM 428 (835)
Q Consensus 401 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~i 428 (835)
+..|...+.++-+.|.|.+.|.+-+|.+
T Consensus 18 ~~~i~ap~e~Vw~~l~D~~~~~~w~p~~ 45 (157)
T 2ns9_A 18 SFEVSKTPEEVFEFLTDPKRFSRAFPGF 45 (157)
T ss_dssp EEEESSCHHHHHHHHTCHHHHGGGSTTE
T ss_pred EEEEcCCHHHHHHHHcCHHHHHhhCCCc
Confidence 3456667889999999999999999974
No 122
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=33.81 E-value=4.7 Score=37.11 Aligned_cols=66 Identities=23% Similarity=0.220 Sum_probs=35.2
Q ss_pred cccceeEEeecchhhHHHHHHHHHHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhH
Q 003261 171 CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLK 250 (835)
Q Consensus 171 gLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk 250 (835)
||++.++.-.=|-||.-.=|...+.....-.++.+.|..++..|. .+..+|..||+.|+
T Consensus 27 ~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~---------------------~e~e~L~~En~~l~ 85 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQ---------------------QEVEKLASENASMK 85 (107)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS---------------------STTTTTTSTTSHHH
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Confidence 555555544434444433333333333334444555555544333 34557888899998
Q ss_pred HHHHHHh
Q 003261 251 DELDRVC 257 (835)
Q Consensus 251 ~el~r~~ 257 (835)
.|++++.
T Consensus 86 ~E~~~lk 92 (107)
T 3a5t_A 86 LELDALR 92 (107)
T ss_dssp HTTTSSS
T ss_pred HHHHHHH
Confidence 8887644
No 123
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=32.97 E-value=2.9e+02 Score=25.37 Aligned_cols=116 Identities=8% Similarity=-0.062 Sum_probs=58.6
Q ss_pred ceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceec
Q 003261 400 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 479 (835)
Q Consensus 400 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~ 479 (835)
.+.+|...+.++-+.+.|.+.|-+.+|.+ ..++++.. +.. -+.+++ |.=+.+.-+..||+....
T Consensus 8 ~s~~I~ap~e~V~~~~~D~e~~p~w~p~~----~~v~~~~~-------~~~-~~~~~~----~~G~~~~~~~~~v~e~~p 71 (155)
T 3ggn_A 8 DAVTIGKPAEQLYAVWRDLPGLPLLMTHL----RSVEVLDD-------KRS-RWTVEA----PAPLGTVSWEAELTADEP 71 (155)
T ss_dssp EEEEESSCHHHHHHHHHCGGGHHHHSTTC----CEEEECSS-------SEE-EEEEEC----CTTTCEEEEEEEEEEEET
T ss_pred EEEEEcCCHHHHHHHHhCHHHhHHHhhhc----eEEEEecC-------Cee-EEEEEe----cCCcceEEEEEEEEEecC
Confidence 45567778899999999999999998874 45666642 111 112222 221244455667776554
Q ss_pred CCeEEEEEEeccCccCCCCCCCccceeecCCcceEeecC-CCccEEEEEEeeeeccccccccchhh
Q 003261 480 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP-NGYSKVTWVEHAEYDESQVHQLYKPL 544 (835)
Q Consensus 480 ~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~-nG~skVtwVeH~e~d~~~v~~lyrpl 544 (835)
+... +-.++++.. .. .... +-.++.+ +|.|+|++.-+.+....-+-.++-++
T Consensus 72 ~~~i--~~~~~~g~~----~~-~~g~------~~F~~~~~~~gT~V~~~~~~~~~~~~l~~~~~~~ 124 (155)
T 3ggn_A 72 GKRI--AWRSLPGAR----IE-NSGE------VLFRPAPGARGTEVVVRLTYRPPGGSAGAVIARM 124 (155)
T ss_dssp TTEE--EEEECTTCS----SC-EEEE------EEEEECSSSSCEEEEEEEEEC-------------
T ss_pred CCEE--EEEECCCCC----cc-eEEE------EEEEECCCCCceEEEEEEEEECCCcHHHHHHHHH
Confidence 4432 233344310 00 1111 2246674 56899999777665433333443333
No 124
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=32.53 E-value=1.8e+02 Score=26.42 Aligned_cols=128 Identities=13% Similarity=-0.001 Sum_probs=0.0
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeecee
Q 003261 399 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 478 (835)
Q Consensus 399 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~ 478 (835)
..+..|...+.++-+.|.|...|.+-+|. .+.++++..+ +..-|+ .|.+.-
T Consensus 5 ~~si~I~ap~e~Vw~~l~d~~~~~~w~p~----v~~~~~~~g~--~~~~G~----------------------~r~~~~- 55 (151)
T 2le1_A 5 RRSVEVAAPAADVWTLVGDFSAIHRWHPQ----VSAPTLRGAS--PHTPGA----------------------ERVFGA- 55 (151)
T ss_dssp EEEEEESSCHHHHHHHHTTSGGGGGTCTT----CCCEEEESSC--TTSTTC----------------------EEEESS-
T ss_pred EEEEEecCCHHHHHHHHhCcCcHHHhcCC----ceEEEEECCC--CCCCCe----------------------EEEEEe-
Q ss_pred cCCeEEEEEEeccCccCCCCCCCccceeecCCc----------ceEeecCCCccEEEEEEeeeeccccccccchhhhccc
Q 003261 479 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSG----------CVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISG 548 (835)
Q Consensus 479 ~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSG----------clIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg 548 (835)
.+|.| +.--|....+.. ..-..++-.| +-+.+..+|.|+|+|- .+|+.+ -..+....+. .
T Consensus 56 ~~G~~--~~e~i~~~d~~~----~~~~~~~~~g~~~~~~~~~~~~l~~~~~~gt~v~w~--~~f~~~-p~~~~~~~~~-~ 125 (151)
T 2le1_A 56 GTEEE--LVERLVERDESA----RRLVYTMPDPPFPITNHRAVLEVVPRDDRHCTVVWT--AMFDCS-PETARELESV-I 125 (151)
T ss_dssp SSSSC--EEEEEEEEETTT----TEEEEEEEECSSSEEEEEEEEEEEESSSSCEEEEEE--EEEEEC-HHHHHHHHHH-T
T ss_pred CCCCE--EEEEEEEEeCCC----CEEEEEEecCCCCceeEEEEEEEEECCCCcEEEEEE--EEEEec-CCCCCHHHHH-H
Q ss_pred hhHHHHHHHHHHHHHHH
Q 003261 549 MGFGAQRWVATLQRQCE 565 (835)
Q Consensus 549 ~afGA~rWlatLqRqce 565 (835)
+.=..+.-|+.|++.+|
T Consensus 126 ~~~~~~~~L~~Lk~~~e 142 (151)
T 2le1_A 126 GDGVFAVGLNALAERYG 142 (151)
T ss_dssp TTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhh
No 125
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=32.12 E-value=18 Score=33.71 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=25.3
Q ss_pred EEEeeecccChhHHHHhhhccccchhhh
Q 003261 647 AATSVWLPVSPQRLFNFLRDERLRSEWD 674 (835)
Q Consensus 647 A~tS~wLpv~p~~vf~FLrde~~R~eWd 674 (835)
...++.++.||++||++|.|..+..+|-
T Consensus 5 i~~~~~i~ap~e~Vw~~l~D~e~~~~w~ 32 (162)
T 2pcs_A 5 GNGSIELKGTVEEVWSKLMDPSILSKCI 32 (162)
T ss_dssp EEEEEEEESCHHHHHHHHTCHHHHHHHS
T ss_pred EeeEEEecCCHHHHHHHhcCHHHHHhhC
Confidence 3467889999999999999999999996
No 126
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=31.30 E-value=20 Score=32.77 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=26.4
Q ss_pred EEEEeeecccChhHHHHhhhccccchhhh
Q 003261 646 SAATSVWLPVSPQRLFNFLRDERLRSEWD 674 (835)
Q Consensus 646 ~A~tS~wLpv~p~~vf~FLrde~~R~eWd 674 (835)
....+..++.||++||++|.|..+..+|-
T Consensus 14 ~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~ 42 (157)
T 2ns9_A 14 RYEGSFEVSKTPEEVFEFLTDPKRFSRAF 42 (157)
T ss_dssp EEEEEEEESSCHHHHHHHHTCHHHHGGGS
T ss_pred EEeeEEEEcCCHHHHHHHHcCHHHHHhhC
Confidence 46678899999999999999999999996
No 127
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=29.54 E-value=1.2e+02 Score=23.39 Aligned_cols=41 Identities=29% Similarity=0.476 Sum_probs=24.7
Q ss_pred hHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHHHHhhh
Q 003261 198 SLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 259 (835)
Q Consensus 198 ~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~ 259 (835)
..++....+|+.+|..+.. ++|.|..--+.|++|+.|+..-
T Consensus 6 aylrkkiarlkkdnlqler---------------------deqnlekiianlrdeiarlene 46 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLER---------------------DEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhh---------------------hHhhHHHHHHHHHHHHHHHHHH
Confidence 4455555666666655443 5566655556778888776643
No 128
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=28.80 E-value=18 Score=30.99 Aligned_cols=43 Identities=9% Similarity=0.241 Sum_probs=30.5
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeec
Q 003261 134 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWF 181 (835)
Q Consensus 134 rr~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWF 181 (835)
|+.+..|+.++....-..+... . ...++|+++|+++..|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHH
Confidence 4455678988866555555432 2 25688999999999988885
No 129
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=28.16 E-value=64 Score=29.20 Aligned_cols=55 Identities=25% Similarity=0.256 Sum_probs=29.7
Q ss_pred HHhhhHHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHHH
Q 003261 194 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDR 255 (835)
Q Consensus 194 r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r 255 (835)
-+++-.+....+++..||.+++..-... | ....++..+..+|+.||.+|++|-+.
T Consensus 36 IqEYl~LE~~~s~le~e~~rlr~~~~~~----~---~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 36 IKEYLELEKSLSRMEDENNRLRLESKRL----D---ARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc----h---hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555656665555532210 0 01112234666888899998888654
No 130
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=28.07 E-value=31 Score=32.21 Aligned_cols=30 Identities=13% Similarity=0.041 Sum_probs=26.6
Q ss_pred EEEEeeecccChhHHHHhhhccccchhhhh
Q 003261 646 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 675 (835)
Q Consensus 646 ~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 675 (835)
....|+.++.||+.||+|+.|..+-.+|--
T Consensus 5 ~v~~s~~I~ap~e~V~~~~~D~e~~p~w~p 34 (155)
T 3ggn_A 5 VVRDAVTIGKPAEQLYAVWRDLPGLPLLMT 34 (155)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHST
T ss_pred EEEEEEEEcCCHHHHHHHHhCHHHhHHHhh
Confidence 346788899999999999999999999963
No 131
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=27.67 E-value=48 Score=24.30 Aligned_cols=21 Identities=29% Similarity=0.378 Sum_probs=18.4
Q ss_pred hHHHHhhHhhHHHHHHHhhhh
Q 003261 240 QHLRIENARLKDELDRVCALA 260 (835)
Q Consensus 240 q~L~~ENa~Lk~el~r~~~~~ 260 (835)
..|..+|..|++|+.|+..+.
T Consensus 10 EeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 10 EELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHHHHHHHh
Confidence 468899999999999998875
No 132
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}
Probab=26.88 E-value=38 Score=30.27 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=25.2
Q ss_pred EEEEeeecccChhHHHHhhhccccchhh
Q 003261 646 SAATSVWLPVSPQRLFNFLRDERLRSEW 673 (835)
Q Consensus 646 ~A~tS~wLpv~p~~vf~FLrde~~R~eW 673 (835)
....+..++.||++||++|.|..+..+|
T Consensus 6 ~i~~~~~i~ap~e~Vw~~ltd~~~~~~W 33 (146)
T 2leq_A 6 IAQVKTVINAPIEKVWEALVNPEIIKEY 33 (146)
T ss_dssp EEEEEEEECSCHHHHHHHHSCTTHHHHH
T ss_pred eEEEEEEECCCHHHHHHHHcCHHHhcee
Confidence 3457788999999999999999999999
No 133
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=26.70 E-value=29 Score=31.85 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=25.3
Q ss_pred EEeeecccChhHHHHhhhccccchhhhh
Q 003261 648 ATSVWLPVSPQRLFNFLRDERLRSEWDI 675 (835)
Q Consensus 648 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 675 (835)
..|..++.||+.||+++.|-.+..+|--
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p 32 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVP 32 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCS
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCC
Confidence 4688999999999999999999999964
No 134
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=26.64 E-value=28 Score=31.48 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=35.3
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhH
Q 003261 136 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRT 186 (835)
Q Consensus 136 ~Rtr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRa 186 (835)
+|.+||.++...+-..+.+..... ..++|+.+|++...|..|..+++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 456799999887777775554443 346899999999999988765544
No 135
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=26.57 E-value=20 Score=28.46 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecc
Q 003261 138 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 182 (835)
Q Consensus 138 tr~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQ 182 (835)
..|+++........+... ........++|+++|+++..|..|.+
T Consensus 4 ~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 4 RIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 358888877775555433 22122356899999999999999954
No 136
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=26.05 E-value=1.2e+02 Score=24.34 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=26.7
Q ss_pred HHHHHhHHHHHhhHhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHhhHhhHHHHHHHh
Q 003261 199 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 257 (835)
Q Consensus 199 ~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~ 257 (835)
.++.++..|.+.|.+|.+++. +-+.|=..|++|++++.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~---------------------~AR~el~~Lkeele~La 50 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLK---------------------EARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhh
Confidence 456677777777777777664 35566778888888763
No 137
>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}
Probab=24.81 E-value=41 Score=30.38 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=24.4
Q ss_pred EEeeecccChhHHHHhhhccccchhhh
Q 003261 648 ATSVWLPVSPQRLFNFLRDERLRSEWD 674 (835)
Q Consensus 648 ~tS~wLpv~p~~vf~FLrde~~R~eWd 674 (835)
..+..++.||++||+.|-|..+..+|-
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W~ 30 (135)
T 3q6a_A 4 ITKMQVDVPRETVFEAFVDPEKIGGFW 30 (135)
T ss_dssp EEEEEESSCHHHHHHHHHCTTTGGGTS
T ss_pred EEEEEeCCCHHHHHHHHcCHHHhcccC
Confidence 467788999999999999999999994
No 138
>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5
Probab=24.70 E-value=40 Score=30.89 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=24.6
Q ss_pred EEEeeecccChhHHHHhhhccccchhhh
Q 003261 647 AATSVWLPVSPQRLFNFLRDERLRSEWD 674 (835)
Q Consensus 647 A~tS~wLpv~p~~vf~FLrde~~R~eWd 674 (835)
-..+.-++.||++||+.|-|+.+..+|-
T Consensus 13 i~~~~~i~ap~e~Vw~altdp~~~~~W~ 40 (145)
T 1x53_A 13 ITLKETFLTSPEELYRVFTTQELVQAFT 40 (145)
T ss_dssp EEEEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHHHhc
Confidence 3456788999999999999999999993
No 139
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=24.01 E-value=1.1e+02 Score=26.88 Aligned_cols=21 Identities=33% Similarity=0.300 Sum_probs=15.2
Q ss_pred HHHHhhHhhHHHHHHHhhhhh
Q 003261 241 HLRIENARLKDELDRVCALAG 261 (835)
Q Consensus 241 ~L~~ENa~Lk~el~r~~~~~~ 261 (835)
.|..|++.||+|++++..++.
T Consensus 57 ~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 57 QKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366677888888887777664
No 140
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=23.88 E-value=2.9 Score=40.48 Aligned_cols=30 Identities=3% Similarity=-0.095 Sum_probs=22.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHH
Q 003261 132 PRKKRYHRHTPQQIQELESLFKECPHPDEK 161 (835)
Q Consensus 132 kkrr~Rtr~T~~Ql~~LE~~F~~~~yPs~~ 161 (835)
+.||.|+.|+.+|++.|++.|+.++||...
T Consensus 135 ~~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 135 GGSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp ------EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CCcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 457788899999999999999999998753
No 141
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.37 E-value=61 Score=33.92 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=15.3
Q ss_pred hHHHHhhHhhHHHHHHHhh
Q 003261 240 QHLRIENARLKDELDRVCA 258 (835)
Q Consensus 240 q~L~~ENa~Lk~el~r~~~ 258 (835)
++++.|..+||+|++++..
T Consensus 78 k~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 78 KEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 3577788999999999773
No 142
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A
Probab=22.96 E-value=3e+02 Score=25.43 Aligned_cols=124 Identities=13% Similarity=0.106 Sum_probs=0.0
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeecee
Q 003261 399 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 478 (835)
Q Consensus 399 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~ 478 (835)
..+..|...+.++-++|.|-+.|.+-|| -|.+|..++ | |. +|.+. +
T Consensus 5 ~~si~I~Ap~~~VW~~l~d~~~~~~w~p-~v~~~~~~~----G--G~--------------------------vR~~~-~ 50 (146)
T 3f08_A 5 TTSMEIFGSTEQVWQLIGGFNSLPDWLP-YIPSSKLTE----G--GR--------------------------VRHLA-N 50 (146)
T ss_dssp EEEEEESSCHHHHHHHHCSTTCHHHHCT-TCCEEEEEG----G--GT--------------------------EEEEE-C
T ss_pred EEEEEEeCCHHHHHHHHhccccHHHhCC-CeEEEEEeC----C--Ce--------------------------EEEEE-e
Q ss_pred cCCeEEEEEEeccCccCCCCCCCccceeecCCc----------ceEee-cCCCccEEEEEEeeeeccccccccchhhhcc
Q 003261 479 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSG----------CVVQD-MPNGYSKVTWVEHAEYDESQVHQLYKPLIIS 547 (835)
Q Consensus 479 ~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSG----------clIq~-~~nG~skVtwVeH~e~d~~~v~~lyrpl~~S 547 (835)
.+|. ++.--|+...+.. ..-..++-.| .-+.+ -.+|+|.|+|.-.++- ..+.++....
T Consensus 51 ~~G~--~~~Erl~~~D~~~----~~~~y~iv~g~~~~~~~~~~~~v~p~~~~~gt~v~w~~~~~p-----~g~~~~~~~~ 119 (146)
T 3f08_A 51 PDGE--TIIERLEVFNDKE----RYYTYSIMNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTP-----VAVSDEEAIN 119 (146)
T ss_dssp TTSC--EEEEEEEEEETTT----TEEEEEEEECSSSEEEEEEEEEEEECSSTTCEEEEEEEEEEE-----SSSCHHHHHH
T ss_pred CCCC--EEEEEEEEEeCCC----CEEEEEEecCCCceeEEEEEEEEEEecCCCcEEEEEEEEEEe-----CCCCHHHHHH
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 003261 548 GMGFGAQRWVATLQRQCECL 567 (835)
Q Consensus 548 g~afGA~rWlatLqRqcerl 567 (835)
.+.-=-+.=|+.|++..|.|
T Consensus 120 ~~~~~~~~~L~~Lk~~~e~~ 139 (146)
T 3f08_A 120 LVHGIYSDGLKALQHAFLDL 139 (146)
T ss_dssp HHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHhhh
No 143
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=22.67 E-value=35 Score=29.17 Aligned_cols=48 Identities=6% Similarity=0.093 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhHHHHHH
Q 003261 139 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 191 (835)
Q Consensus 139 r~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk 191 (835)
.+++.|...|.-.|-.. ..-.++|+.+|++...|+.+...-|.|.|+.
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47788888887755332 2356899999999999988776555555543
No 144
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.56 E-value=1.4e+02 Score=25.38 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=10.1
Q ss_pred hhhHHHHhhHhhHHHHHH
Q 003261 238 EEQHLRIENARLKDELDR 255 (835)
Q Consensus 238 ~~q~L~~ENa~Lk~el~r 255 (835)
+.+.|+.++..|..|+..
T Consensus 51 en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 51 ENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334555666666666543
No 145
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=21.89 E-value=48 Score=34.47 Aligned_cols=19 Identities=32% Similarity=0.183 Sum_probs=14.9
Q ss_pred HHHhhHhhHHHHHHHhhhh
Q 003261 242 LRIENARLKDELDRVCALA 260 (835)
Q Consensus 242 L~~ENa~Lk~el~r~~~~~ 260 (835)
...+...|++|.+|++.++
T Consensus 41 ~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 41 LESEVADLKKENKDLKESL 59 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4567788889999988775
No 146
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=21.82 E-value=52 Score=31.31 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=26.4
Q ss_pred EEEEeeecccChhHHHHhhhccccchhhh
Q 003261 646 SAATSVWLPVSPQRLFNFLRDERLRSEWD 674 (835)
Q Consensus 646 ~A~tS~wLpv~p~~vf~FLrde~~R~eWd 674 (835)
....|+.++.||+.||+++.|-....+|-
T Consensus 6 ~v~~si~I~ap~~~V~~~v~D~~~~p~~~ 34 (172)
T 3tfz_A 6 HVEHTVTVAAPADLVWEVLADVLGYADIF 34 (172)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHC
T ss_pred EEEEEEEeCCCHHHHHHHHHhHHHHHhhC
Confidence 45688999999999999999999999995
No 147
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=21.03 E-value=19 Score=26.56 Aligned_cols=42 Identities=10% Similarity=0.200 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeEEeecchhhH
Q 003261 140 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRT 186 (835)
Q Consensus 140 ~T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLs~rQVkvWFQNRRa 186 (835)
++.++...+...+... ....++|+.+|++..-|..|+.....
T Consensus 6 ~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 6 INKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 5666666655556543 23568999999999999999865443
No 148
>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5
Probab=20.34 E-value=40 Score=30.29 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=23.3
Q ss_pred EeeecccChhHHHHhhhccccchhhh
Q 003261 649 TSVWLPVSPQRLFNFLRDERLRSEWD 674 (835)
Q Consensus 649 tS~wLpv~p~~vf~FLrde~~R~eWd 674 (835)
.+..++.||++||++|-|..+..+|-
T Consensus 7 ~~~~i~ap~e~Vw~altd~~~~~~W~ 32 (147)
T 1z94_A 7 LHRVLSAPPERVYRAFLDPLALAKWL 32 (147)
T ss_dssp EEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEeCCCHHHHHHHhCCHHHHhhcc
Confidence 45678999999999999999999994
No 149
>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5
Probab=20.31 E-value=41 Score=30.57 Aligned_cols=28 Identities=11% Similarity=0.235 Sum_probs=25.0
Q ss_pred EEEeeecccChhHHHHhhhccccchhhh
Q 003261 647 AATSVWLPVSPQRLFNFLRDERLRSEWD 674 (835)
Q Consensus 647 A~tS~wLpv~p~~vf~FLrde~~R~eWd 674 (835)
...+..++.||++||+.|-|..+..+|-
T Consensus 10 i~~~~~i~ap~e~Vw~~ltd~~~~~~W~ 37 (143)
T 1xn6_A 10 IKQTIVFNASIQKVWSVVSTAEGIASWF 37 (143)
T ss_dssp EEEEEEESSCHHHHHHTTSCSHHHHTTS
T ss_pred EEEEEEEcCCHHHHHHHHhCHhHHHHhc
Confidence 3467888999999999999999999996
No 150
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=20.17 E-value=1.1e+02 Score=27.70 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=12.6
Q ss_pred HhhhHHHHHhHHHHHhhHhHHh
Q 003261 195 HENSLLRQENDKLRAENMSIRD 216 (835)
Q Consensus 195 ~e~~~l~~en~~L~~en~~l~e 216 (835)
.....|..+.++|+.||..|+.
T Consensus 65 ~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666655544
No 151
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.09 E-value=1.2e+02 Score=24.31 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=7.5
Q ss_pred hhhHHHHhhHhhHHHHH
Q 003261 238 EEQHLRIENARLKDELD 254 (835)
Q Consensus 238 ~~q~L~~ENa~Lk~el~ 254 (835)
+...|+.||+.||.++.
T Consensus 20 d~eaLk~E~~eLk~k~~ 36 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYE 36 (53)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33344444444444443
Done!