BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003262
         (835 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZPA|A Chain A, Crystal Structure Of Trna(Met) Cytidine Acetyltransferase
 pdb|2ZPA|B Chain B, Crystal Structure Of Trna(Met) Cytidine Acetyltransferase
          Length = 671

 Score = 93.6 bits (231), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 141/368 (38%), Gaps = 76/368 (20%)

Query: 79  STVALLAARGRGKSXXXXXXXXXXXXXXYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKE 138
              A+ AARGRGKS                   VTAP+  +   L +F  + F  I    
Sbjct: 193 GVAAVTAARGRGKSALAGQLISRIA----GRAIVTAPAKASTDVLAQFAGEKFRFIAPDA 248

Query: 139 HIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPV 198
            +  D                                      Q + LV+DEAAAIP P+
Sbjct: 249 LLASD-------------------------------------EQADWLVVDEAAAIPAPL 271

Query: 199 VRSLLGPY-LVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIEL 257
           +  L+  +    L++TV GYEGTGR   LK   +                      + EL
Sbjct: 272 LHQLVSRFPRTLLTTTVQGYEGTGRGFLLKFCARFPH-----------------LHRFEL 314

Query: 258 SESIRYAPGDPIESWLNGLLCLDVMNSIPHINRLPPPSECDLYYVNRDTLFSYHKESELF 317
            + IR+A G P+E  ++  L  D  N   H      P    +      TL+    E+ L 
Sbjct: 315 QQPIRWAQGCPLEKXVSEALVFDDEN-FTHT-----PQGNIVISAFEQTLWQSDPETPL- 367

Query: 318 LQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQI 377
             ++  L   +HY+ SP DL+   DAP  H     G     +N++   L ++    EG +
Sbjct: 368 --KVYQLLSGAHYRTSPLDLRRXXDAPGQHFLQAAG-----ENEIAGALWLVD---EGGL 417

Query: 378 SRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAV 437
           S++     ++   +P G+ +    +    + +  +L G R+ RIA HP+  R G G   +
Sbjct: 418 SQQLSQAVWAGFRRPRGNLVAQSLAAHGNNPLAATLRGRRVSRIAVHPARQREGTGRQLI 477

Query: 438 ELLTRYYE 445
               +Y +
Sbjct: 478 AGALQYTQ 485



 Score = 38.5 bits (88), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 500 EKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHSEDIEVNESD 559
           + L+Y+ VSFG T +L+RFW++  F       +  A +G +T   L P      ++ E +
Sbjct: 485 QDLDYLSVSFGYTGELWRFWQRCGFVLVRXGNHREASSGCYTAXALLPXSDAGKQLAERE 544


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,209,086
Number of Sequences: 62578
Number of extensions: 1009410
Number of successful extensions: 2192
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2185
Number of HSP's gapped (non-prelim): 4
length of query: 835
length of database: 14,973,337
effective HSP length: 107
effective length of query: 728
effective length of database: 8,277,491
effective search space: 6026013448
effective search space used: 6026013448
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)