Query 003262
Match_columns 835
No_of_seqs 303 out of 734
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 20:09:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2036 Predicted P-loop ATPas 100.0 1E-257 3E-262 2122.7 65.3 809 1-833 199-1010(1011)
2 COG1444 Predicted P-loop ATPas 100.0 2E-141 4E-146 1228.3 53.4 560 37-715 192-756 (758)
3 PF13718 GNAT_acetyltr_2: GNAT 100.0 2.8E-71 6.1E-76 561.3 16.5 196 320-549 1-196 (196)
4 PF05127 Helicase_RecD: Helica 100.0 5.2E-60 1.1E-64 473.4 5.2 175 82-280 1-177 (177)
5 PF13725 tRNA_bind_2: Possible 99.7 5E-18 1.1E-22 155.3 6.0 99 571-695 1-99 (101)
6 PHA03333 putative ATPase subun 99.5 7.6E-13 1.6E-17 154.5 15.4 137 79-234 188-346 (752)
7 PF13604 AAA_30: AAA domain; P 98.7 1.4E-07 3E-12 96.5 14.0 156 57-264 2-162 (196)
8 TIGR01447 recD exodeoxyribonuc 98.6 7.5E-07 1.6E-11 105.2 16.3 200 59-274 148-364 (586)
9 PRK10875 recD exonuclease V su 98.6 1.4E-07 3E-12 111.7 10.1 202 58-276 154-377 (615)
10 TIGR01448 recD_rel helicase, p 98.4 2.9E-06 6.3E-11 102.5 16.0 171 55-276 322-497 (720)
11 PF13673 Acetyltransf_10: Acet 98.4 3.5E-06 7.6E-11 76.6 12.5 88 332-524 30-117 (117)
12 TIGR01575 rimI ribosomal-prote 98.3 1.7E-05 3.6E-10 72.7 13.9 77 416-544 55-131 (131)
13 COG0456 RimI Acetyltransferase 98.2 9.9E-07 2.2E-11 85.9 4.2 82 415-549 91-174 (177)
14 PF13508 Acetyltransf_7: Acety 98.2 2.3E-06 5E-11 74.0 5.5 30 415-444 26-55 (79)
15 smart00487 DEXDc DEAD-like hel 98.2 1.5E-05 3.2E-10 76.9 11.0 147 56-216 8-172 (201)
16 PRK13889 conjugal transfer rel 98.1 3E-05 6.4E-10 96.3 15.4 152 56-265 346-502 (988)
17 PTZ00330 acetyltransferase; Pr 98.0 5.1E-05 1.1E-09 71.8 11.5 31 415-445 82-112 (147)
18 TIGR02768 TraA_Ti Ti-type conj 98.0 5.4E-05 1.2E-09 92.0 14.0 153 55-265 351-508 (744)
19 PRK13826 Dtr system oriT relax 98.0 6.4E-05 1.4E-09 94.1 14.8 153 55-265 380-537 (1102)
20 PRK10146 aminoalkylphosphonic 97.9 1.5E-05 3.2E-10 75.3 5.5 30 416-445 77-106 (144)
21 PHA03368 DNA packaging termina 97.9 0.00011 2.4E-09 87.2 13.7 128 78-216 254-392 (738)
22 PRK09491 rimI ribosomal-protei 97.9 6.7E-05 1.5E-09 71.7 9.8 29 417-445 65-93 (146)
23 PF00583 Acetyltransf_1: Acety 97.9 3.4E-05 7.5E-10 66.0 6.7 33 413-445 23-55 (83)
24 PRK10314 putative acyltransfer 97.9 1.7E-05 3.8E-10 78.1 5.1 31 415-445 74-104 (153)
25 TIGR02760 TraI_TIGR conjugativ 97.8 0.00015 3.3E-09 95.9 13.7 151 54-231 427-583 (1960)
26 TIGR03827 GNAT_ablB putative b 97.7 0.00057 1.2E-08 73.0 14.5 82 415-548 183-266 (266)
27 TIGR00376 DNA helicase, putati 97.7 0.00077 1.7E-08 80.9 16.6 68 55-129 156-223 (637)
28 PRK13688 hypothetical protein; 97.7 7.3E-05 1.6E-09 74.5 6.5 27 414-440 78-104 (156)
29 COG1643 HrpA HrpA-like helicas 97.7 0.00023 4.9E-09 87.2 11.9 134 66-216 56-207 (845)
30 TIGR01970 DEAH_box_HrpB ATP-de 97.7 0.00031 6.6E-09 86.4 12.8 134 65-216 7-158 (819)
31 TIGR03103 trio_acet_GNAT GNAT- 97.7 0.00096 2.1E-08 78.7 16.5 93 316-445 92-185 (547)
32 TIGR01890 N-Ac-Glu-synth amino 97.7 0.00026 5.7E-09 80.8 11.4 30 416-445 348-377 (429)
33 PRK11664 ATP-dependent RNA hel 97.6 0.00046 9.9E-09 84.8 12.7 134 65-216 10-161 (812)
34 TIGR02760 TraI_TIGR conjugativ 97.6 0.00065 1.4E-08 90.2 14.9 159 55-268 1018-1185(1960)
35 PRK10562 putative acetyltransf 97.6 0.00016 3.4E-09 69.3 6.6 69 418-545 71-139 (145)
36 PRK14712 conjugal transfer nic 97.5 0.00097 2.1E-08 86.3 14.5 156 56-263 835-999 (1623)
37 PF05970 PIF1: PIF1-like helic 97.5 0.00035 7.5E-09 78.2 9.4 122 56-202 1-122 (364)
38 PRK03624 putative acetyltransf 97.5 0.00022 4.7E-09 65.9 6.6 29 417-445 70-98 (140)
39 PHA02533 17 large terminase pr 97.5 0.0018 4E-08 76.2 15.6 150 52-219 55-214 (534)
40 cd00046 DEXDc DEAD-like helica 97.5 0.00036 7.9E-09 63.2 7.3 124 80-213 2-143 (144)
41 PF00270 DEAD: DEAD/DEAH box h 97.5 0.00032 6.9E-09 67.8 7.3 68 58-132 1-69 (169)
42 PRK13709 conjugal transfer nic 97.4 0.0012 2.6E-08 86.3 14.3 158 55-264 966-1132(1747)
43 PRK10514 putative acetyltransf 97.4 0.00029 6.3E-09 66.8 6.2 26 418-443 72-97 (145)
44 PF13527 Acetyltransf_9: Acety 97.4 0.00018 4E-09 66.7 4.6 33 413-445 70-102 (127)
45 PRK08939 primosomal protein Dn 97.4 0.00076 1.6E-08 74.2 10.0 57 60-116 135-194 (306)
46 PRK05279 N-acetylglutamate syn 97.4 0.00027 5.8E-09 80.9 6.7 30 416-445 360-389 (441)
47 TIGR02382 wecD_rffC TDP-D-fuco 97.4 0.00042 9E-09 70.1 7.1 30 416-445 124-153 (191)
48 PF04851 ResIII: Type III rest 97.3 0.00078 1.7E-08 65.5 8.6 67 57-127 4-70 (184)
49 PHA00673 acetyltransferase dom 97.3 0.0029 6.3E-08 63.4 12.6 94 313-445 12-115 (154)
50 PRK10140 putative acetyltransf 97.3 0.00087 1.9E-08 64.2 8.6 69 420-540 83-152 (162)
51 TIGR01967 DEAH_box_HrpA ATP-de 97.3 0.0014 3.1E-08 83.5 12.7 133 66-216 73-223 (1283)
52 PLN02706 glucosamine 6-phospha 97.3 0.0004 8.7E-09 66.5 6.0 30 416-445 86-115 (150)
53 TIGR00643 recG ATP-dependent D 97.3 0.0019 4.1E-08 77.4 12.9 146 56-214 235-396 (630)
54 PRK10917 ATP-dependent DNA hel 97.3 0.0028 6.1E-08 76.6 14.4 148 55-214 260-419 (681)
55 cd02169 Citrate_lyase_ligase C 97.2 0.00041 9E-09 76.0 5.8 29 417-445 27-55 (297)
56 PRK07757 acetyltransferase; Pr 97.2 0.00052 1.1E-08 65.9 5.9 30 416-445 66-95 (152)
57 TIGR02406 ectoine_EctA L-2,4-d 97.2 0.00083 1.8E-08 66.1 7.3 31 415-445 66-96 (157)
58 PHA02653 RNA helicase NPH-II; 97.2 0.0019 4.2E-08 77.9 11.5 149 52-215 156-332 (675)
59 TIGR01547 phage_term_2 phage t 97.1 0.0025 5.4E-08 71.6 11.1 115 79-204 2-123 (396)
60 PRK10975 TDP-fucosamine acetyl 97.1 0.0015 3.3E-08 66.0 8.4 30 416-445 127-156 (194)
61 PRK11131 ATP-dependent RNA hel 97.1 0.0024 5.2E-08 81.4 11.8 131 66-215 80-229 (1294)
62 TIGR01686 FkbH FkbH-like domai 97.1 0.0068 1.5E-07 66.7 13.7 31 415-445 257-287 (320)
63 PF08445 FR47: FR47-like prote 97.1 0.0015 3.2E-08 58.8 7.0 28 416-443 22-49 (86)
64 PRK09831 putative acyltransfer 97.1 0.00073 1.6E-08 65.1 5.2 27 417-443 74-100 (147)
65 PRK07922 N-acetylglutamate syn 97.0 0.0011 2.3E-08 66.4 6.2 30 416-445 71-100 (169)
66 PLN02825 amino-acid N-acetyltr 97.0 0.0011 2.3E-08 77.8 7.0 77 415-548 432-514 (515)
67 PHA02558 uvsW UvsW helicase; P 97.0 0.0057 1.2E-07 71.3 13.0 142 55-214 113-259 (501)
68 KOG0922 DEAH-box RNA helicase 96.9 0.0045 9.8E-08 73.4 11.0 133 78-233 66-215 (674)
69 PRK12308 bifunctional arginino 96.9 0.0044 9.5E-08 74.2 11.0 30 416-445 528-557 (614)
70 KOG1805 DNA replication helica 96.9 0.0022 4.7E-08 78.4 8.0 166 53-237 666-859 (1100)
71 PRK08084 DNA replication initi 96.9 0.0083 1.8E-07 63.2 11.4 38 78-115 45-82 (235)
72 PF13086 AAA_11: AAA domain; P 96.8 0.003 6.5E-08 63.6 7.3 65 58-129 3-75 (236)
73 PRK15130 spermidine N1-acetylt 96.8 0.0049 1.1E-07 61.4 8.6 79 419-549 86-165 (186)
74 TIGR00580 mfd transcription-re 96.8 0.012 2.5E-07 73.7 13.5 146 56-214 451-609 (926)
75 PRK07952 DNA replication prote 96.8 0.0065 1.4E-07 65.0 9.8 133 58-234 78-223 (244)
76 PF09848 DUF2075: Uncharacteri 96.8 0.009 2E-07 66.5 11.4 166 78-283 1-185 (352)
77 PRK12377 putative replication 96.8 0.01 2.3E-07 63.6 11.2 113 79-234 102-224 (248)
78 TIGR03448 mycothiol_MshD mycot 96.7 0.002 4.4E-08 68.6 5.7 27 417-443 72-98 (292)
79 TIGR03448 mycothiol_MshD mycot 96.7 0.0037 8.1E-08 66.6 7.1 29 417-445 228-256 (292)
80 PF03354 Terminase_1: Phage Te 96.6 0.022 4.8E-07 66.1 13.6 136 79-223 23-170 (477)
81 PRK04296 thymidine kinase; Pro 96.6 0.011 2.4E-07 60.4 9.9 54 181-234 77-135 (190)
82 PRK10590 ATP-dependent RNA hel 96.6 0.0036 7.9E-08 71.9 6.8 66 57-129 24-97 (456)
83 PRK08903 DnaA regulatory inact 96.6 0.018 4E-07 59.6 11.3 41 77-117 41-81 (227)
84 PRK10536 hypothetical protein; 96.6 0.015 3.2E-07 63.0 10.7 123 56-204 59-198 (262)
85 COG1484 DnaC DNA replication p 96.6 0.013 2.9E-07 62.8 10.3 114 78-236 105-234 (254)
86 PRK11192 ATP-dependent RNA hel 96.6 0.027 5.9E-07 64.0 13.4 65 57-128 24-94 (434)
87 cd04301 NAT_SF N-Acyltransfera 96.5 0.007 1.5E-07 47.0 5.9 32 414-445 24-55 (65)
88 PF03237 Terminase_6: Terminas 96.5 0.032 7E-07 59.9 12.8 110 82-203 1-118 (384)
89 PRK01172 ski2-like helicase; P 96.5 0.011 2.4E-07 71.2 10.1 139 57-216 23-181 (674)
90 PRK11634 ATP-dependent RNA hel 96.5 0.013 2.9E-07 70.4 10.5 64 57-127 29-94 (629)
91 PRK11776 ATP-dependent RNA hel 96.4 0.0055 1.2E-07 70.3 6.9 63 57-126 27-91 (460)
92 TIGR03420 DnaA_homol_Hda DnaA 96.4 0.022 4.8E-07 58.4 10.3 43 75-117 35-77 (226)
93 PRK10809 ribosomal-protein-S5- 96.4 0.014 3E-07 58.7 8.6 77 418-546 106-185 (194)
94 COG4098 comFA Superfamily II D 96.4 0.014 3.1E-07 65.0 9.2 147 45-213 84-242 (441)
95 PRK10151 ribosomal-protein-L7/ 96.4 0.018 3.8E-07 57.1 9.2 78 419-548 96-176 (179)
96 PF13420 Acetyltransf_4: Acety 96.2 0.021 4.5E-07 54.7 8.7 76 414-541 75-151 (155)
97 PF00580 UvrD-helicase: UvrD/R 96.2 0.015 3.2E-07 61.6 8.1 68 57-133 1-71 (315)
98 PF13245 AAA_19: Part of AAA d 96.2 0.026 5.7E-07 49.9 8.3 50 78-127 10-62 (76)
99 PTZ00424 helicase 45; Provisio 96.2 0.023 4.9E-07 63.4 9.7 66 57-129 51-118 (401)
100 PRK10689 transcription-repair 96.2 0.022 4.7E-07 72.8 10.6 146 56-214 600-758 (1147)
101 COG1246 ArgA N-acetylglutamate 96.1 0.0081 1.8E-07 60.1 5.2 30 416-445 66-95 (153)
102 TIGR00124 cit_ly_ligase [citra 96.1 0.022 4.7E-07 63.7 9.1 28 418-445 53-80 (332)
103 cd00009 AAA The AAA+ (ATPases 96.1 0.037 8.1E-07 50.6 9.2 55 61-116 3-57 (151)
104 PRK08181 transposase; Validate 96.1 0.027 5.8E-07 61.2 9.3 55 58-115 89-143 (269)
105 PRK05580 primosome assembly pr 96.0 0.073 1.6E-06 64.7 13.9 71 56-131 144-214 (679)
106 PRK00254 ski2-like helicase; P 96.0 0.026 5.7E-07 68.7 10.2 141 57-216 24-181 (720)
107 TIGR03585 PseH pseudaminic aci 96.0 0.2 4.3E-06 47.9 14.2 68 421-541 82-150 (156)
108 PRK08116 hypothetical protein; 96.0 0.056 1.2E-06 58.4 11.3 59 58-116 90-152 (268)
109 PRK02362 ski2-like helicase; P 96.0 0.029 6.2E-07 68.6 10.0 65 57-128 24-88 (737)
110 PRK04537 ATP-dependent RNA hel 95.9 0.021 4.5E-07 68.0 8.4 66 57-129 32-106 (572)
111 PRK01346 hypothetical protein; 95.9 0.0097 2.1E-07 67.1 5.4 33 413-445 77-109 (411)
112 PRK06921 hypothetical protein; 95.8 0.037 8E-07 59.8 8.9 38 78-115 117-155 (266)
113 PRK11448 hsdR type I restricti 95.8 0.036 7.9E-07 70.7 10.1 68 55-125 412-481 (1123)
114 PF01695 IstB_IS21: IstB-like 95.7 0.021 4.6E-07 58.1 6.3 38 78-115 47-84 (178)
115 PRK08727 hypothetical protein; 95.7 0.055 1.2E-06 57.0 9.6 38 77-114 40-77 (233)
116 PRK11057 ATP-dependent DNA hel 95.7 0.043 9.3E-07 65.7 9.9 118 57-195 26-152 (607)
117 PRK05642 DNA replication initi 95.6 0.079 1.7E-06 55.9 10.5 37 79-115 46-82 (234)
118 PRK09401 reverse gyrase; Revie 95.6 0.067 1.4E-06 68.7 11.6 66 56-129 80-145 (1176)
119 smart00382 AAA ATPases associa 95.5 0.086 1.9E-06 47.4 9.1 42 79-121 3-44 (148)
120 PRK01297 ATP-dependent RNA hel 95.5 0.052 1.1E-06 62.8 9.2 65 57-128 110-183 (475)
121 KOG1803 DNA helicase [Replicat 95.4 0.025 5.4E-07 66.8 6.4 65 54-125 183-247 (649)
122 KOG3138 Predicted N-acetyltran 95.4 0.02 4.3E-07 59.2 5.0 75 416-541 90-164 (187)
123 PF13523 Acetyltransf_8: Acety 95.4 0.046 1E-06 52.5 7.1 67 340-445 42-108 (152)
124 PF02562 PhoH: PhoH-like prote 95.4 0.076 1.6E-06 55.7 9.2 128 56-204 4-141 (205)
125 PTZ00110 helicase; Provisional 95.4 0.025 5.4E-07 66.9 6.3 66 57-129 153-225 (545)
126 PLN00206 DEAD-box ATP-dependen 95.3 0.031 6.8E-07 65.5 6.9 66 56-128 143-217 (518)
127 cd00268 DEADc DEAD-box helicas 95.3 0.11 2.4E-06 52.2 10.0 64 57-127 22-89 (203)
128 KOG3139 N-acetyltransferase [G 95.2 0.056 1.2E-06 54.6 7.3 33 416-448 85-117 (165)
129 PRK06526 transposase; Provisio 95.2 0.053 1.2E-06 58.3 7.7 38 78-115 98-135 (254)
130 TIGR01587 cas3_core CRISPR-ass 95.1 0.053 1.1E-06 59.8 7.6 51 81-131 2-53 (358)
131 PF13173 AAA_14: AAA domain 95.1 0.13 2.9E-06 48.8 9.2 42 78-120 2-43 (128)
132 COG3393 Predicted acetyltransf 95.1 0.025 5.5E-07 61.0 4.6 75 362-442 146-228 (268)
133 PF04545 Sigma70_r4: Sigma-70, 95.1 0.078 1.7E-06 42.7 6.4 45 663-707 4-48 (50)
134 PRK04837 ATP-dependent RNA hel 95.0 0.082 1.8E-06 60.1 9.0 65 57-128 31-104 (423)
135 PRK06835 DNA replication prote 95.0 0.046 1E-06 61.0 6.7 47 68-116 175-221 (329)
136 TIGR01054 rgy reverse gyrase. 95.0 0.058 1.3E-06 69.2 8.3 68 56-131 78-145 (1171)
137 COG2153 ElaA Predicted acyltra 95.0 0.044 9.5E-07 54.6 5.7 30 416-445 77-106 (155)
138 PRK14974 cell division protein 94.9 0.24 5.3E-06 55.5 12.0 50 78-127 140-191 (336)
139 PHA03372 DNA packaging termina 94.9 0.27 5.9E-06 58.8 12.7 153 55-217 169-340 (668)
140 TIGR03158 cas3_cyano CRISPR-as 94.9 0.16 3.5E-06 56.9 10.6 60 61-129 2-61 (357)
141 KOG0920 ATP-dependent RNA heli 94.8 0.18 3.9E-06 62.9 11.5 137 68-216 181-331 (924)
142 PF10236 DAP3: Mitochondrial r 94.8 0.066 1.4E-06 59.1 7.2 41 78-120 23-63 (309)
143 COG1247 Sortase and related ac 94.8 0.15 3.3E-06 52.0 9.2 91 408-550 74-166 (169)
144 PHA02544 44 clamp loader, smal 94.8 0.26 5.5E-06 53.6 11.6 51 63-116 28-78 (316)
145 PRK09183 transposase/IS protei 94.8 0.12 2.6E-06 55.6 8.9 38 78-115 102-139 (259)
146 KOG0924 mRNA splicing factor A 94.8 0.17 3.7E-06 60.8 10.6 301 78-440 371-724 (1042)
147 TIGR00635 ruvB Holliday juncti 94.7 0.27 5.9E-06 53.1 11.5 18 79-96 31-48 (305)
148 PRK00080 ruvB Holliday junctio 94.7 0.28 6.1E-06 54.1 11.7 58 57-117 29-87 (328)
149 KOG3396 Glucosamine-phosphate 94.6 0.046 9.9E-07 53.9 4.7 64 344-444 51-114 (150)
150 TIGR02688 conserved hypothetic 94.6 0.13 2.9E-06 59.4 9.1 71 78-202 209-280 (449)
151 PRK14964 DNA polymerase III su 94.5 0.32 6.9E-06 57.3 12.2 44 60-104 17-60 (491)
152 PF13302 Acetyltransf_3: Acety 94.5 0.12 2.7E-06 48.2 7.1 29 415-444 84-112 (142)
153 TIGR00614 recQ_fam ATP-depende 94.4 0.39 8.5E-06 55.7 12.6 118 57-195 12-140 (470)
154 PF08281 Sigma70_r4_2: Sigma-7 94.4 0.12 2.6E-06 42.0 6.0 45 663-707 10-54 (54)
155 PHA01807 hypothetical protein 94.4 0.069 1.5E-06 53.4 5.6 30 417-446 83-112 (153)
156 PRK14961 DNA polymerase III su 94.3 0.63 1.4E-05 52.3 13.6 38 60-97 20-57 (363)
157 TIGR02880 cbbX_cfxQ probable R 94.3 0.25 5.5E-06 53.8 10.1 29 79-107 59-87 (284)
158 PRK14958 DNA polymerase III su 94.3 0.34 7.4E-06 57.2 11.8 38 60-97 20-57 (509)
159 PRK13342 recombination factor 94.3 0.18 4E-06 57.5 9.4 37 60-97 16-55 (413)
160 TIGR01389 recQ ATP-dependent D 94.2 0.2 4.4E-06 59.6 10.0 118 57-195 14-140 (591)
161 TIGR03817 DECH_helic helicase/ 94.2 0.25 5.4E-06 60.8 11.0 64 57-127 37-101 (742)
162 PRK12323 DNA polymerase III su 94.2 0.57 1.2E-05 56.9 13.5 43 60-103 20-62 (700)
163 PRK14956 DNA polymerase III su 94.2 0.27 5.9E-06 57.6 10.7 39 60-98 22-60 (484)
164 PRK06893 DNA replication initi 94.0 0.28 6.1E-06 51.6 9.5 35 80-114 41-75 (229)
165 PRK13767 ATP-dependent helicas 94.0 0.14 3E-06 64.0 8.4 63 57-126 33-103 (876)
166 PRK14949 DNA polymerase III su 94.0 0.38 8.2E-06 60.1 11.7 38 60-97 20-57 (944)
167 PRK08691 DNA polymerase III su 94.0 0.45 9.9E-06 58.0 12.2 37 60-96 20-56 (709)
168 KOG3234 Acetyltransferase, (GN 93.9 0.07 1.5E-06 53.9 4.4 85 416-552 70-155 (173)
169 PRK14722 flhF flagellar biosyn 93.9 0.24 5.3E-06 56.3 9.3 39 78-116 137-177 (374)
170 COG4626 Phage terminase-like p 93.8 0.84 1.8E-05 54.1 13.6 154 57-221 62-230 (546)
171 PRK07764 DNA polymerase III su 93.8 0.69 1.5E-05 57.7 13.6 43 60-103 19-61 (824)
172 COG0454 WecD Histone acetyltra 93.7 0.07 1.5E-06 43.9 3.6 26 421-446 87-112 (156)
173 PRK00440 rfc replication facto 93.7 0.51 1.1E-05 50.8 11.1 46 60-106 21-66 (319)
174 PRK12422 chromosomal replicati 93.6 0.31 6.7E-06 56.6 9.7 37 79-115 142-178 (445)
175 PRK10865 protein disaggregatio 93.5 0.21 4.5E-06 62.4 8.5 44 60-105 182-225 (857)
176 PRK00771 signal recognition pa 93.4 0.47 1E-05 55.1 10.7 39 78-116 95-133 (437)
177 PRK14952 DNA polymerase III su 93.4 0.85 1.8E-05 54.8 13.1 43 60-103 17-59 (584)
178 PRK14960 DNA polymerase III su 93.4 0.69 1.5E-05 56.3 12.3 36 60-95 19-54 (702)
179 TIGR02397 dnaX_nterm DNA polym 93.4 1.1 2.3E-05 49.4 13.0 43 60-103 18-60 (355)
180 COG1061 SSL2 DNA or RNA helica 93.3 0.68 1.5E-05 53.6 11.9 145 56-219 36-187 (442)
181 PRK14957 DNA polymerase III su 93.3 0.74 1.6E-05 54.9 12.3 40 60-99 20-59 (546)
182 PF05673 DUF815: Protein of un 93.2 0.27 5.9E-06 53.1 7.8 71 57-127 31-101 (249)
183 PRK06645 DNA polymerase III su 93.2 1.1 2.5E-05 52.9 13.5 44 59-103 24-67 (507)
184 PRK12402 replication factor C 93.1 0.88 1.9E-05 49.5 11.8 41 61-102 20-60 (337)
185 TIGR01211 ELP3 histone acetylt 93.1 0.11 2.3E-06 61.5 4.9 23 423-445 465-487 (522)
186 PRK07003 DNA polymerase III su 93.0 0.75 1.6E-05 56.7 11.9 43 60-103 20-62 (830)
187 PRK07994 DNA polymerase III su 93.0 0.89 1.9E-05 55.3 12.5 121 60-203 20-140 (647)
188 PRK14963 DNA polymerase III su 92.9 1.3 2.8E-05 52.4 13.5 43 60-103 18-60 (504)
189 PRK14970 DNA polymerase III su 92.9 0.96 2.1E-05 50.5 11.9 43 60-103 21-63 (367)
190 PRK14953 DNA polymerase III su 92.7 1.3 2.9E-05 52.0 13.2 43 60-103 20-62 (486)
191 PRK14962 DNA polymerase III su 92.7 0.94 2E-05 53.1 11.8 39 60-98 18-56 (472)
192 PF04466 Terminase_3: Phage te 92.7 0.033 7.2E-07 63.2 0.0 113 79-204 3-120 (387)
193 COG3153 Predicted acetyltransf 92.6 0.069 1.5E-06 54.6 2.2 79 415-551 75-153 (171)
194 PRK05703 flhF flagellar biosyn 92.6 0.48 1E-05 54.7 9.2 103 78-214 221-342 (424)
195 cd06171 Sigma70_r4 Sigma70, re 92.5 0.37 8E-06 37.3 5.8 45 663-707 10-54 (55)
196 PF13191 AAA_16: AAA ATPase do 92.5 0.24 5.2E-06 48.6 5.8 46 60-106 7-52 (185)
197 cd01124 KaiC KaiC is a circadi 92.5 1.2 2.6E-05 44.2 10.7 41 81-121 2-43 (187)
198 PRK14701 reverse gyrase; Provi 92.5 0.43 9.3E-06 63.3 9.6 66 56-129 79-144 (1638)
199 PRK09111 DNA polymerase III su 92.4 1 2.2E-05 54.3 11.9 39 60-98 28-66 (598)
200 PRK14951 DNA polymerase III su 92.2 1.4 3E-05 53.5 12.7 43 60-103 20-62 (618)
201 PRK09694 helicase Cas3; Provis 92.2 0.6 1.3E-05 58.5 10.0 52 78-129 301-353 (878)
202 COG0513 SrmB Superfamily II DN 92.1 0.27 5.8E-06 58.0 6.5 68 56-130 51-122 (513)
203 PRK14087 dnaA chromosomal repl 92.1 0.62 1.3E-05 54.2 9.4 37 78-115 141-180 (450)
204 COG2812 DnaX DNA polymerase II 92.0 0.2 4.3E-06 59.2 5.3 132 59-213 19-157 (515)
205 TIGR02959 SigZ RNA polymerase 91.8 0.41 8.8E-06 47.7 6.6 55 663-717 100-154 (170)
206 PRK05563 DNA polymerase III su 91.7 1.9 4.2E-05 51.6 13.1 43 60-103 20-62 (559)
207 CHL00181 cbbX CbbX; Provisiona 91.6 1.4 3.1E-05 48.2 11.0 69 35-108 13-89 (287)
208 PF07652 Flavi_DEAD: Flaviviru 91.6 0.36 7.9E-06 48.4 5.8 127 79-219 5-141 (148)
209 PRK00411 cdc6 cell division co 91.5 0.76 1.6E-05 51.4 9.0 73 59-131 36-110 (394)
210 TIGR03345 VI_ClpV1 type VI sec 91.5 0.66 1.4E-05 58.1 9.3 45 60-106 191-235 (852)
211 TIGR02640 gas_vesic_GvpN gas v 91.5 2.3 5E-05 45.7 12.3 51 58-114 4-54 (262)
212 COG1200 RecG RecG-like helicas 91.5 1.6 3.5E-05 52.9 12.0 161 56-233 262-435 (677)
213 PF02399 Herpes_ori_bp: Origin 91.4 0.51 1.1E-05 58.1 8.0 104 77-194 48-154 (824)
214 PF12775 AAA_7: P-loop contain 91.4 0.56 1.2E-05 51.0 7.6 41 57-100 15-55 (272)
215 PRK14971 DNA polymerase III su 91.4 2.2 4.8E-05 51.7 13.2 44 60-104 21-64 (614)
216 PRK09047 RNA polymerase factor 91.3 0.64 1.4E-05 45.1 7.2 51 662-712 105-155 (161)
217 PLN03137 ATP-dependent DNA hel 91.3 0.6 1.3E-05 59.6 8.6 66 56-132 460-526 (1195)
218 KOG3216 Diamine acetyltransfer 91.3 0.46 1E-05 47.9 6.1 65 413-529 82-146 (163)
219 PRK14712 conjugal transfer nic 91.2 1.6 3.6E-05 57.7 12.7 129 55-225 280-415 (1623)
220 PRK14969 DNA polymerase III su 91.2 2.9 6.2E-05 49.8 13.8 38 60-97 20-57 (527)
221 PRK04195 replication factor C 91.2 2.6 5.6E-05 49.3 13.2 60 59-121 20-79 (482)
222 PRK12529 RNA polymerase sigma 91.1 0.5 1.1E-05 47.4 6.4 49 663-711 127-175 (178)
223 PRK09652 RNA polymerase sigma 91.0 0.65 1.4E-05 45.5 7.0 53 663-715 128-180 (182)
224 COG1670 RimL Acetyltransferase 91.0 0.7 1.5E-05 44.5 7.1 82 416-548 96-177 (187)
225 PRK06647 DNA polymerase III su 90.9 1.8 4E-05 51.9 11.9 43 60-103 20-62 (563)
226 PRK00118 putative DNA-binding 90.9 0.87 1.9E-05 43.2 7.4 53 662-714 16-68 (104)
227 PRK05896 DNA polymerase III su 90.9 0.34 7.3E-06 58.3 5.7 43 60-103 20-62 (605)
228 PF01443 Viral_helicase1: Vira 90.9 0.35 7.7E-06 49.6 5.2 21 182-202 62-82 (234)
229 PRK07940 DNA polymerase III su 90.8 2.7 5.8E-05 48.3 12.6 43 60-103 9-60 (394)
230 TIGR02903 spore_lon_C ATP-depe 90.8 2.9 6.2E-05 50.7 13.5 39 61-100 159-197 (615)
231 TIGR00708 cobA cob(I)alamin ad 90.8 2.7 5.9E-05 43.2 11.4 44 181-234 96-150 (173)
232 PRK07037 extracytoplasmic-func 90.8 0.73 1.6E-05 45.0 7.1 51 663-713 109-159 (163)
233 PF13401 AAA_22: AAA domain; P 90.8 0.29 6.2E-06 45.6 4.1 54 78-131 4-62 (131)
234 TIGR00595 priA primosomal prot 90.6 0.9 1.9E-05 53.6 8.9 48 83-131 2-49 (505)
235 TIGR00603 rad25 DNA repair hel 90.6 2.5 5.5E-05 52.1 12.8 139 59-214 258-411 (732)
236 PRK12536 RNA polymerase sigma 90.5 0.68 1.5E-05 46.4 6.8 51 663-713 129-179 (181)
237 PRK11924 RNA polymerase sigma 90.4 0.73 1.6E-05 45.0 6.8 52 663-714 125-176 (179)
238 PRK11054 helD DNA helicase IV; 90.4 1.2 2.5E-05 54.6 9.9 67 56-131 196-265 (684)
239 PRK07133 DNA polymerase III su 90.4 2.5 5.5E-05 52.0 12.6 39 60-98 22-60 (725)
240 PRK09642 RNA polymerase sigma 90.4 0.84 1.8E-05 44.5 7.1 51 663-713 106-156 (160)
241 cd00561 CobA_CobO_BtuR ATP:cor 90.4 2.3 4.9E-05 43.2 10.2 44 180-233 93-147 (159)
242 TIGR03346 chaperone_ClpB ATP-d 90.3 0.81 1.7E-05 57.3 8.6 45 59-105 176-220 (852)
243 PRK12512 RNA polymerase sigma 90.3 0.78 1.7E-05 45.9 6.9 51 663-713 131-181 (184)
244 COG0507 RecD ATP-dependent exo 90.3 0.51 1.1E-05 57.4 6.7 128 59-224 322-453 (696)
245 KOG1802 RNA helicase nonsense 90.2 0.59 1.3E-05 56.3 6.7 65 58-129 412-476 (935)
246 TIGR02999 Sig-70_X6 RNA polyme 90.0 0.84 1.8E-05 45.4 6.9 49 663-711 134-182 (183)
247 PRK12524 RNA polymerase sigma 90.0 0.87 1.9E-05 46.3 7.1 52 663-714 136-187 (196)
248 COG2607 Predicted ATPase (AAA+ 90.0 1.1 2.4E-05 48.6 8.0 73 54-126 61-133 (287)
249 PRK13766 Hef nuclease; Provisi 89.9 4.1 8.8E-05 50.2 14.1 126 80-216 31-174 (773)
250 PRK09643 RNA polymerase sigma 89.9 0.84 1.8E-05 46.4 6.9 54 663-716 134-187 (192)
251 PF13880 Acetyltransf_13: ESCO 89.9 0.27 6E-06 43.4 2.9 28 417-444 7-34 (70)
252 PRK14965 DNA polymerase III su 89.8 2.6 5.6E-05 50.7 11.9 43 60-103 20-62 (576)
253 PRK12519 RNA polymerase sigma 89.8 0.77 1.7E-05 46.3 6.5 53 663-715 141-193 (194)
254 TIGR00362 DnaA chromosomal rep 89.7 1.2 2.5E-05 50.8 8.6 36 79-115 137-175 (405)
255 TIGR02948 SigW_bacill RNA poly 89.7 0.81 1.8E-05 45.5 6.5 51 663-713 136-186 (187)
256 PRK12898 secA preprotein trans 89.7 1.3 2.9E-05 53.8 9.4 89 55-153 102-204 (656)
257 TIGR02621 cas3_GSU0051 CRISPR- 89.6 1.6 3.5E-05 54.5 10.2 67 57-130 16-85 (844)
258 PRK05602 RNA polymerase sigma 89.6 0.92 2E-05 45.5 6.8 52 663-714 128-179 (186)
259 PRK09112 DNA polymerase III su 89.6 1.3 2.9E-05 50.0 8.8 44 59-103 26-69 (351)
260 PRK00149 dnaA chromosomal repl 89.6 0.79 1.7E-05 53.0 7.1 38 79-116 149-188 (450)
261 TIGR02937 sigma70-ECF RNA poly 89.5 0.82 1.8E-05 42.5 6.0 48 663-710 110-157 (158)
262 PF00176 SNF2_N: SNF2 family N 89.4 3.2 6.9E-05 43.9 11.1 61 61-122 2-72 (299)
263 PRK09639 RNA polymerase sigma 89.3 1.1 2.4E-05 43.8 7.0 52 663-715 112-163 (166)
264 PRK12542 RNA polymerase sigma 89.2 1.2 2.7E-05 44.6 7.4 58 662-719 121-178 (185)
265 PRK09641 RNA polymerase sigma 89.1 1 2.2E-05 44.8 6.7 51 663-713 136-186 (187)
266 TIGR02943 Sig70_famx1 RNA poly 89.0 1.2 2.6E-05 45.2 7.3 53 663-715 131-183 (188)
267 PRK09637 RNA polymerase sigma 89.0 1.1 2.5E-05 45.2 7.0 52 663-714 106-157 (181)
268 PRK12523 RNA polymerase sigma 89.0 1.1 2.5E-05 44.4 6.9 51 663-713 119-169 (172)
269 KOG3235 Subunit of the major N 88.9 0.15 3.3E-06 51.6 0.6 81 417-550 73-155 (193)
270 PRK12547 RNA polymerase sigma 88.9 1.2 2.7E-05 43.9 7.0 50 663-712 112-161 (164)
271 PF05729 NACHT: NACHT domain 88.8 0.8 1.7E-05 43.8 5.6 28 79-106 1-28 (166)
272 PRK06851 hypothetical protein; 88.8 0.52 1.1E-05 53.6 4.9 58 65-123 18-76 (367)
273 TIGR02954 Sig70_famx3 RNA poly 88.8 1.1 2.4E-05 44.1 6.7 50 663-712 119-168 (169)
274 PRK09648 RNA polymerase sigma 88.7 1.2 2.7E-05 44.7 7.1 49 663-711 139-187 (189)
275 PRK12531 RNA polymerase sigma 88.7 1.2 2.7E-05 45.1 7.1 50 663-712 141-190 (194)
276 PRK12526 RNA polymerase sigma 88.7 1.2 2.6E-05 45.9 7.1 50 663-712 153-202 (206)
277 TIGR03499 FlhF flagellar biosy 88.7 1.2 2.5E-05 48.7 7.3 39 78-116 194-234 (282)
278 KOG0923 mRNA splicing factor A 88.6 1.8 3.8E-05 52.4 9.1 251 67-369 272-555 (902)
279 PRK12520 RNA polymerase sigma 88.6 1.3 2.9E-05 44.6 7.3 52 663-714 131-182 (191)
280 COG1204 Superfamily II helicas 88.6 1.4 3E-05 54.7 8.6 139 59-221 34-197 (766)
281 cd01393 recA_like RecA is a b 88.6 1.4 3.1E-05 45.3 7.6 39 78-116 19-63 (226)
282 KOG4144 Arylalkylamine N-acety 88.5 0.45 9.7E-06 48.1 3.6 25 415-439 101-125 (190)
283 PRK11923 algU RNA polymerase s 88.4 1.2 2.6E-05 44.8 6.8 53 663-715 138-190 (193)
284 PRK12539 RNA polymerase sigma 88.4 1.3 2.8E-05 44.6 6.9 50 663-712 131-180 (184)
285 COG1875 NYN ribonuclease and A 88.3 2.4 5.3E-05 48.4 9.5 54 56-117 228-286 (436)
286 PRK10919 ATP-dependent DNA hel 88.3 1.5 3.3E-05 53.4 8.7 65 57-130 3-70 (672)
287 PRK06759 RNA polymerase factor 88.3 1.2 2.6E-05 43.0 6.4 46 663-708 106-151 (154)
288 COG1203 CRISPR-associated heli 88.3 1.3 2.8E-05 54.6 8.2 159 52-215 191-381 (733)
289 PRK09646 RNA polymerase sigma 88.2 1.3 2.8E-05 45.0 6.8 50 663-712 142-191 (194)
290 PRK12527 RNA polymerase sigma 88.2 1.6 3.4E-05 42.6 7.2 50 663-712 105-154 (159)
291 COG4096 HsdR Type I site-speci 88.2 1.4 2.9E-05 54.5 8.0 61 54-116 163-224 (875)
292 PRK12514 RNA polymerase sigma 88.0 1.4 2.9E-05 43.9 6.7 50 663-712 129-178 (179)
293 PRK12546 RNA polymerase sigma 88.0 1.2 2.5E-05 45.5 6.4 52 663-714 113-164 (188)
294 PRK13919 putative RNA polymera 87.9 1.4 3.1E-05 43.9 6.9 50 663-712 135-184 (186)
295 TIGR02881 spore_V_K stage V sp 87.9 4.6 0.0001 43.2 11.1 23 79-101 43-65 (261)
296 PRK11773 uvrD DNA-dependent he 87.8 1.7 3.6E-05 53.4 8.7 66 57-131 10-78 (721)
297 PRK12530 RNA polymerase sigma 87.8 1.6 3.4E-05 44.4 7.1 51 663-713 134-184 (189)
298 PRK09415 RNA polymerase factor 87.8 1.4 3E-05 44.2 6.7 51 663-713 127-177 (179)
299 KOG0345 ATP-dependent RNA heli 87.8 1 2.2E-05 52.5 6.3 65 57-128 29-100 (567)
300 PRK12534 RNA polymerase sigma 87.7 1.5 3.1E-05 44.0 6.8 50 663-712 137-186 (187)
301 PRK12516 RNA polymerase sigma 87.7 1.6 3.4E-05 44.4 7.1 52 663-714 116-167 (187)
302 PRK12528 RNA polymerase sigma 87.7 1.2 2.6E-05 43.5 6.1 47 663-709 113-159 (161)
303 PRK12522 RNA polymerase sigma 87.7 1.6 3.5E-05 43.2 7.0 53 663-715 119-171 (173)
304 KOG0926 DEAH-box RNA helicase 87.5 1.5 3.3E-05 53.9 7.8 116 67-203 263-395 (1172)
305 PHA00729 NTP-binding motif con 87.4 2.5 5.4E-05 45.2 8.6 27 68-95 8-34 (226)
306 PF07728 AAA_5: AAA domain (dy 87.4 1.2 2.5E-05 42.5 5.6 42 80-124 1-42 (139)
307 TIGR00678 holB DNA polymerase 87.4 7.8 0.00017 39.0 11.9 35 68-102 4-38 (188)
308 PRK14955 DNA polymerase III su 87.4 6.3 0.00014 45.0 12.4 43 60-103 20-62 (397)
309 PRK12537 RNA polymerase sigma 87.3 1.5 3.2E-05 44.1 6.6 49 663-711 133-181 (182)
310 TIGR01074 rep ATP-dependent DN 87.1 1.7 3.7E-05 52.5 8.1 66 57-131 2-70 (664)
311 PRK09200 preprotein translocas 87.1 2.4 5.2E-05 52.8 9.4 55 82-137 95-149 (790)
312 PRK12545 RNA polymerase sigma 87.1 1.8 3.9E-05 44.4 7.2 50 663-712 139-188 (201)
313 TIGR03015 pepcterm_ATPase puta 87.0 1.8 3.9E-05 45.6 7.4 44 56-101 23-66 (269)
314 PRK13709 conjugal transfer nic 87.0 5.4 0.00012 53.7 13.0 127 57-225 414-547 (1747)
315 PRK13341 recombination factor 87.0 4.1 8.9E-05 50.4 11.3 28 68-96 43-70 (725)
316 PRK08301 sporulation sigma fac 87.0 1.7 3.7E-05 45.5 7.1 53 662-714 177-233 (234)
317 TIGR02939 RpoE_Sigma70 RNA pol 86.9 1.6 3.4E-05 43.6 6.5 53 662-714 137-189 (190)
318 PRK09644 RNA polymerase sigma 86.9 1.9 4.1E-05 42.4 6.9 51 663-713 108-158 (165)
319 PRK04217 hypothetical protein; 86.9 2.5 5.4E-05 40.5 7.4 53 662-714 41-93 (110)
320 PF12568 DUF3749: Acetyltransf 86.8 9.9 0.00021 37.5 11.6 81 312-443 9-89 (128)
321 PRK12540 RNA polymerase sigma 86.8 1.9 4.1E-05 43.7 7.1 52 663-714 111-162 (182)
322 PRK12543 RNA polymerase sigma 86.8 2.1 4.6E-05 42.8 7.4 53 663-715 117-169 (179)
323 TIGR02989 Sig-70_gvs1 RNA poly 86.8 1.4 3E-05 42.7 5.8 49 662-710 110-158 (159)
324 PRK09645 RNA polymerase sigma 86.8 2 4.3E-05 42.5 7.0 50 663-712 118-167 (173)
325 PRK12525 RNA polymerase sigma 86.7 1.9 4.1E-05 42.7 6.9 49 663-711 118-166 (168)
326 TIGR02983 SigE-fam_strep RNA p 86.7 1.7 3.8E-05 42.3 6.6 50 663-712 110-159 (162)
327 PRK08451 DNA polymerase III su 86.7 7.1 0.00015 46.7 12.7 40 60-99 18-57 (535)
328 cd01123 Rad51_DMC1_radA Rad51_ 86.4 1.7 3.7E-05 45.0 6.7 47 78-124 19-71 (235)
329 PF01637 Arch_ATPase: Archaeal 86.4 0.5 1.1E-05 47.6 2.7 49 78-126 20-68 (234)
330 TIGR02984 Sig-70_plancto1 RNA 86.4 2.1 4.5E-05 42.6 7.0 49 663-711 140-188 (189)
331 TIGR01075 uvrD DNA helicase II 86.4 1.8 3.8E-05 53.1 7.8 66 57-131 5-73 (715)
332 PRK06288 RNA polymerase sigma 86.4 1.8 4E-05 46.5 7.1 55 662-716 211-265 (268)
333 PRK06995 flhF flagellar biosyn 86.4 2.2 4.7E-05 50.4 8.1 40 78-117 256-296 (484)
334 TIGR02985 Sig70_bacteroi1 RNA 86.3 1.8 3.9E-05 41.5 6.3 48 663-710 113-160 (161)
335 TIGR02928 orc1/cdc6 family rep 86.1 2.7 5.9E-05 46.5 8.5 74 58-131 20-99 (365)
336 PRK14959 DNA polymerase III su 86.1 6.6 0.00014 47.8 12.1 39 60-98 20-58 (624)
337 cd03282 ABC_MSH4_euk MutS4 hom 85.8 0.22 4.8E-06 51.8 -0.3 47 79-128 30-76 (204)
338 PRK09361 radB DNA repair and r 85.8 3 6.5E-05 43.2 8.1 38 78-115 23-60 (225)
339 TIGR01243 CDC48 AAA family ATP 85.6 5.5 0.00012 49.1 11.5 35 78-115 212-246 (733)
340 TIGR02947 SigH_actino RNA poly 85.6 1.3 2.8E-05 44.8 5.2 52 663-714 131-182 (193)
341 PRK12532 RNA polymerase sigma 85.6 2.3 5E-05 43.0 7.0 50 663-712 136-185 (195)
342 PRK03992 proteasome-activating 85.5 7.8 0.00017 44.3 11.9 18 78-95 165-182 (389)
343 PHA02535 P terminase ATPase su 85.4 32 0.00069 41.8 17.1 126 51-196 117-254 (581)
344 PRK14954 DNA polymerase III su 85.4 14 0.0003 45.1 14.5 43 60-103 20-62 (620)
345 PRK12533 RNA polymerase sigma 85.4 2.1 4.5E-05 45.0 6.7 52 663-714 134-185 (216)
346 PRK12904 preprotein translocas 85.3 1.2 2.6E-05 55.4 5.7 54 82-136 98-151 (830)
347 PRK06930 positive control sigm 85.3 2.7 5.9E-05 42.8 7.3 51 663-713 114-164 (170)
348 PRK12511 RNA polymerase sigma 85.3 2.5 5.4E-05 42.9 7.1 52 663-714 111-162 (182)
349 PRK12515 RNA polymerase sigma 85.3 2.6 5.7E-05 42.4 7.2 51 663-713 131-181 (189)
350 TIGR02950 SigM_subfam RNA poly 85.3 0.98 2.1E-05 43.5 3.9 49 663-711 105-153 (154)
351 PF13177 DNA_pol3_delta2: DNA 85.3 15 0.00033 36.7 12.5 123 61-204 2-124 (162)
352 PRK10416 signal recognition pa 85.1 8.8 0.00019 42.9 11.8 39 78-116 114-152 (318)
353 CHL00095 clpC Clp protease ATP 85.1 3.9 8.5E-05 51.1 10.0 57 34-102 498-562 (821)
354 TIGR02980 SigBFG RNA polymeras 85.1 2.4 5.2E-05 44.1 7.0 49 663-711 178-226 (227)
355 smart00421 HTH_LUXR helix_turn 85.1 3.4 7.4E-05 32.6 6.4 44 663-707 3-46 (58)
356 TIGR02952 Sig70_famx2 RNA poly 84.9 2.3 5E-05 41.5 6.4 49 662-710 121-169 (170)
357 PRK06986 fliA flagellar biosyn 84.9 2.4 5.1E-05 44.6 6.9 50 663-712 184-233 (236)
358 PRK14086 dnaA chromosomal repl 84.8 4.5 9.7E-05 49.1 9.9 40 665-704 555-594 (617)
359 PRK12544 RNA polymerase sigma 84.7 2.8 6.2E-05 43.4 7.3 50 663-712 148-197 (206)
360 PRK09647 RNA polymerase sigma 84.7 2.8 6E-05 43.4 7.2 51 663-713 138-188 (203)
361 cd01394 radB RadB. The archaea 84.6 3 6.6E-05 42.9 7.4 37 78-114 19-55 (218)
362 TIGR00348 hsdR type I site-spe 84.5 7.1 0.00015 47.8 11.7 76 50-125 232-311 (667)
363 smart00488 DEXDc2 DEAD-like he 84.4 4.9 0.00011 44.1 9.3 68 57-127 9-81 (289)
364 smart00489 DEXDc3 DEAD-like he 84.4 4.9 0.00011 44.1 9.3 68 57-127 9-81 (289)
365 PRK14721 flhF flagellar biosyn 84.3 4.8 0.0001 46.7 9.5 39 78-116 191-231 (420)
366 PRK09649 RNA polymerase sigma 84.2 2.2 4.8E-05 43.1 6.1 49 663-711 130-178 (185)
367 PRK04914 ATP-dependent helicas 84.0 4.9 0.00011 51.1 10.2 155 47-215 141-316 (956)
368 PRK12538 RNA polymerase sigma 83.9 2.6 5.5E-05 44.7 6.7 52 663-714 171-222 (233)
369 PRK12535 RNA polymerase sigma 83.9 2.7 5.9E-05 43.1 6.7 53 663-715 133-185 (196)
370 PRK11034 clpA ATP-dependent Cl 83.9 4.6 0.0001 50.2 9.7 31 65-96 195-225 (758)
371 PF04665 Pox_A32: Poxvirus A32 83.9 1.3 2.8E-05 47.7 4.5 45 80-127 15-59 (241)
372 PRK10865 protein disaggregatio 83.8 5.4 0.00012 50.2 10.5 58 34-103 557-622 (857)
373 PRK14948 DNA polymerase III su 83.8 10 0.00023 46.1 12.5 43 60-103 20-62 (620)
374 PRK09651 RNA polymerase sigma 83.8 2.7 5.8E-05 41.9 6.4 49 663-711 119-167 (172)
375 TIGR02012 tigrfam_recA protein 83.5 3.1 6.7E-05 46.7 7.4 40 78-117 55-94 (321)
376 PRK14950 DNA polymerase III su 83.5 11 0.00024 45.5 12.4 39 60-98 20-58 (585)
377 PRK12541 RNA polymerase sigma 83.5 2.8 6E-05 41.0 6.3 47 663-709 112-158 (161)
378 PRK07471 DNA polymerase III su 83.4 15 0.00033 41.8 12.9 43 60-103 23-65 (365)
379 TIGR03346 chaperone_ClpB ATP-d 83.3 5.3 0.00012 50.2 10.1 52 34-96 554-613 (852)
380 PRK05803 sporulation sigma fac 83.3 3.1 6.8E-05 43.7 7.0 51 663-713 175-229 (233)
381 TIGR02639 ClpA ATP-dependent C 83.2 5.4 0.00012 49.2 10.0 37 60-97 186-222 (731)
382 PRK07670 RNA polymerase sigma 83.2 3.2 6.9E-05 44.2 7.1 51 662-712 200-250 (251)
383 PRK09640 RNA polymerase sigma 83.1 1.5 3.3E-05 44.2 4.4 53 663-715 134-186 (188)
384 cd06170 LuxR_C_like C-terminal 83.0 4.4 9.5E-05 32.1 6.2 43 664-707 1-43 (57)
385 PF14542 Acetyltransf_CG: GCN5 82.9 1.7 3.7E-05 38.7 4.1 33 415-447 22-54 (78)
386 PRK06851 hypothetical protein; 82.8 3.2 7E-05 47.3 7.3 68 50-121 190-258 (367)
387 KOG0925 mRNA splicing factor A 82.6 2.6 5.5E-05 49.6 6.4 131 67-214 54-201 (699)
388 PRK12518 RNA polymerase sigma 82.6 1.8 3.8E-05 42.8 4.6 51 663-713 120-170 (175)
389 PRK06731 flhF flagellar biosyn 82.5 4.3 9.3E-05 44.4 7.8 37 79-115 76-112 (270)
390 TIGR03117 cas_csf4 CRISPR-asso 82.3 4.7 0.0001 49.1 8.8 64 60-126 1-65 (636)
391 cd00983 recA RecA is a bacter 82.3 2.9 6.3E-05 47.0 6.6 42 78-119 55-96 (325)
392 cd01121 Sms Sms (bacterial rad 82.1 4.3 9.3E-05 46.3 8.0 38 78-115 82-119 (372)
393 TIGR02479 FliA_WhiG RNA polyme 82.1 3.6 7.8E-05 42.9 6.8 50 662-711 174-223 (224)
394 PRK14723 flhF flagellar biosyn 82.0 7.4 0.00016 48.4 10.3 39 78-116 185-225 (767)
395 TIGR02639 ClpA ATP-dependent C 81.9 6.8 0.00015 48.4 10.1 58 34-103 443-508 (731)
396 PRK11034 clpA ATP-dependent Cl 81.9 5.6 0.00012 49.5 9.4 58 34-103 447-512 (758)
397 PF08444 Gly_acyl_tr_C: Aralky 81.9 0.62 1.4E-05 43.0 1.0 48 391-448 5-52 (89)
398 PRK08058 DNA polymerase III su 81.6 19 0.00042 40.1 12.8 38 60-97 10-47 (329)
399 PHA03311 helicase-primase subu 81.6 1.8 3.9E-05 53.0 5.0 41 79-125 72-112 (828)
400 CHL00176 ftsH cell division pr 81.6 11 0.00023 46.2 11.4 19 78-96 216-234 (638)
401 PRK12513 RNA polymerase sigma 81.6 2.2 4.8E-05 43.0 5.0 50 663-712 139-188 (194)
402 COG1703 ArgK Putative periplas 81.5 3.7 8E-05 45.8 6.9 65 53-119 26-91 (323)
403 TIGR01073 pcrA ATP-dependent D 81.3 4 8.7E-05 50.1 7.9 66 56-130 4-72 (726)
404 PRK05564 DNA polymerase III su 81.2 20 0.00042 39.5 12.5 40 60-99 8-47 (313)
405 TIGR00963 secA preprotein tran 81.2 3.6 7.9E-05 50.8 7.3 55 82-137 73-127 (745)
406 TIGR01242 26Sp45 26S proteasom 81.0 14 0.0003 41.6 11.4 18 78-95 156-173 (364)
407 PRK12517 RNA polymerase sigma 80.9 4.9 0.00011 40.9 7.2 52 663-714 128-179 (188)
408 PRK13531 regulatory ATPase Rav 80.8 10 0.00022 45.1 10.5 49 33-95 8-56 (498)
409 PRK12899 secA preprotein trans 80.8 2.8 6.1E-05 52.8 6.3 55 80-135 109-163 (970)
410 PRK07408 RNA polymerase sigma 80.8 4.4 9.5E-05 43.5 7.1 50 663-712 203-252 (256)
411 PF00196 GerE: Bacterial regul 80.7 4.8 0.0001 33.4 5.8 44 663-707 3-46 (58)
412 CHL00095 clpC Clp protease ATP 80.7 5.7 0.00012 49.7 9.0 42 61-104 184-225 (821)
413 PF07374 DUF1492: Protein of u 80.7 4.1 8.8E-05 38.0 5.9 42 666-707 58-99 (100)
414 TIGR03001 Sig-70_gmx1 RNA poly 80.6 4.7 0.0001 43.2 7.2 50 663-712 161-210 (244)
415 KOG2488 Acetyltransferase (GNA 80.6 1.7 3.6E-05 45.5 3.6 32 413-444 118-149 (202)
416 PRK08583 RNA polymerase sigma 80.6 4.4 9.5E-05 43.2 7.0 50 663-712 205-254 (257)
417 cd01129 PulE-GspE PulE/GspE Th 80.5 4.2 9.2E-05 44.0 6.9 47 51-102 58-104 (264)
418 PRK05911 RNA polymerase sigma 80.3 5 0.00011 43.1 7.4 52 663-714 205-256 (257)
419 PRK08295 RNA polymerase factor 80.3 4.9 0.00011 40.8 7.0 50 663-713 155-204 (208)
420 TIGR00631 uvrb excinuclease AB 80.3 12 0.00025 46.0 11.2 64 57-126 10-73 (655)
421 PRK13104 secA preprotein trans 80.0 1.8 3.9E-05 54.3 4.3 55 82-137 99-153 (896)
422 PRK11823 DNA repair protein Ra 79.8 4.6 9.9E-05 47.1 7.3 38 78-115 80-117 (446)
423 PRK06811 RNA polymerase factor 79.5 4.5 9.7E-05 40.9 6.4 48 663-710 131-178 (189)
424 TIGR02846 spore_sigmaK RNA pol 79.4 4.6 0.0001 42.3 6.6 49 663-711 174-226 (227)
425 PF03308 ArgK: ArgK protein; 79.3 4.5 9.8E-05 44.3 6.6 55 61-119 14-69 (266)
426 PF04967 HTH_10: HTH DNA bindi 79.2 6.6 0.00014 33.0 6.1 45 664-708 1-52 (53)
427 TIGR01241 FtsH_fam ATP-depende 79.0 10 0.00022 44.5 10.0 20 77-96 87-106 (495)
428 cd01120 RecA-like_NTPases RecA 78.9 3.3 7.1E-05 39.1 4.9 37 81-117 2-38 (165)
429 TIGR03020 EpsA transcriptional 78.1 48 0.001 36.0 13.9 46 662-708 189-234 (247)
430 PRK07500 rpoH2 RNA polymerase 78.1 5.7 0.00012 43.5 7.1 50 663-712 227-278 (289)
431 PRK11922 RNA polymerase sigma 77.7 3.8 8.3E-05 43.0 5.4 51 663-713 149-199 (231)
432 PRK03975 tfx putative transcri 77.2 8.3 0.00018 38.6 7.2 52 662-714 5-56 (141)
433 TIGR02941 Sigma_B RNA polymera 77.2 6.2 0.00013 42.0 6.9 50 662-711 204-253 (255)
434 PRK12727 flagellar biosynthesi 77.2 15 0.00033 44.1 10.6 38 78-115 350-389 (559)
435 TIGR02850 spore_sigG RNA polym 77.1 5.3 0.00012 42.6 6.3 49 662-710 205-253 (254)
436 TIGR00150 HI0065_YjeE ATPase, 77.1 6.9 0.00015 38.6 6.6 36 78-117 22-57 (133)
437 PRK08215 sporulation sigma fac 77.1 6.1 0.00013 42.2 6.8 50 662-711 208-257 (258)
438 PRK07667 uridine kinase; Provi 76.9 8.3 0.00018 39.5 7.4 49 68-116 6-55 (193)
439 PRK09638 RNA polymerase sigma 76.8 3.6 7.8E-05 40.7 4.7 50 663-712 126-175 (176)
440 COG2804 PulE Type II secretory 76.8 5 0.00011 47.4 6.4 59 52-117 237-295 (500)
441 PF12746 GNAT_acetyltran: GNAT 76.8 2.5 5.5E-05 46.2 3.8 28 418-445 191-218 (265)
442 PRK06704 RNA polymerase factor 76.7 6.4 0.00014 42.0 6.8 50 663-712 116-165 (228)
443 TIGR02960 SigX5 RNA polymerase 76.6 5 0.00011 43.9 6.1 51 662-712 141-191 (324)
444 cd01130 VirB11-like_ATPase Typ 76.4 5.6 0.00012 40.4 6.0 42 56-104 9-50 (186)
445 PRK09354 recA recombinase A; P 76.3 17 0.00036 41.5 10.2 42 78-119 60-101 (349)
446 PRK12723 flagellar biosynthesi 75.9 6.9 0.00015 45.0 7.2 39 78-116 174-216 (388)
447 PRK08154 anaerobic benzoate ca 75.7 5.5 0.00012 44.0 6.2 41 57-97 108-152 (309)
448 PF05496 RuvB_N: Holliday junc 75.7 22 0.00047 38.5 10.3 22 182-203 101-122 (233)
449 PRK12724 flagellar biosynthesi 75.7 14 0.00031 43.1 9.7 39 78-116 223-262 (432)
450 TIGR02533 type_II_gspE general 75.6 5.8 0.00013 46.8 6.6 47 51-102 220-266 (486)
451 PRK06871 DNA polymerase III su 75.3 43 0.00094 37.7 13.1 123 60-203 6-128 (325)
452 PRK05572 sporulation sigma fac 75.3 7.8 0.00017 41.3 7.0 51 662-712 201-251 (252)
453 PRK07399 DNA polymerase III su 75.2 45 0.00097 37.3 13.1 43 60-103 8-50 (314)
454 COG2401 ABC-type ATPase fused 75.0 2.2 4.7E-05 49.6 2.8 36 411-446 237-272 (593)
455 PLN03025 replication factor C 74.9 6.1 0.00013 43.6 6.3 42 60-102 17-58 (319)
456 KOG0952 DNA/RNA helicase MER3/ 74.8 6.6 0.00014 49.9 7.0 130 79-222 127-293 (1230)
457 PRK12326 preprotein translocas 74.8 6.6 0.00014 48.5 6.9 65 88-153 101-179 (764)
458 PRK12906 secA preprotein trans 74.7 5.1 0.00011 49.9 6.1 67 86-153 101-181 (796)
459 PF00308 Bac_DnaA: Bacterial d 74.4 9.3 0.0002 40.2 7.2 48 68-115 22-73 (219)
460 TIGR02859 spore_sigH RNA polym 74.4 8 0.00017 38.9 6.5 47 664-711 151-197 (198)
461 PRK08769 DNA polymerase III su 74.1 5.8 0.00013 44.4 5.9 168 58-276 6-184 (319)
462 PF12846 AAA_10: AAA-like doma 74.1 5.1 0.00011 42.2 5.2 37 79-116 2-38 (304)
463 PF07279 DUF1442: Protein of u 74.1 17 0.00036 38.9 8.9 61 65-127 29-89 (218)
464 COG1595 RpoE DNA-directed RNA 74.1 8.7 0.00019 38.6 6.7 53 662-714 126-178 (182)
465 PRK08699 DNA polymerase III su 73.9 42 0.0009 37.7 12.5 124 62-203 7-134 (325)
466 PHA00350 putative assembly pro 73.9 21 0.00045 41.4 10.3 32 80-113 3-35 (399)
467 COG2805 PilT Tfp pilus assembl 73.7 5.5 0.00012 44.6 5.4 60 52-117 101-163 (353)
468 COG1485 Predicted ATPase [Gene 73.5 16 0.00034 41.8 9.0 119 79-236 66-196 (367)
469 TIGR02393 RpoD_Cterm RNA polym 73.3 8.8 0.00019 40.5 6.7 49 663-711 176-228 (238)
470 PRK07122 RNA polymerase sigma 73.1 8.4 0.00018 41.7 6.7 50 662-711 214-263 (264)
471 PRK09636 RNA polymerase sigma 73.0 7.4 0.00016 42.3 6.3 49 663-711 115-163 (293)
472 PRK11608 pspF phage shock prot 73.0 25 0.00054 39.2 10.5 22 182-203 100-121 (326)
473 COG3267 ExeA Type II secretory 72.9 16 0.00035 40.1 8.6 118 58-203 33-152 (269)
474 TIGR02957 SigX4 RNA polymerase 72.8 8.5 0.00019 41.8 6.7 49 662-710 107-155 (281)
475 PF01935 DUF87: Domain of unkn 72.7 5.5 0.00012 41.3 5.0 40 78-118 23-63 (229)
476 TIGR01817 nifA Nif-specific re 72.6 41 0.00088 39.9 12.7 21 183-203 291-311 (534)
477 TIGR03345 VI_ClpV1 type VI sec 72.5 19 0.00041 45.5 10.4 61 34-106 555-623 (852)
478 PRK13833 conjugal transfer pro 72.3 10 0.00022 42.7 7.2 40 57-102 129-168 (323)
479 KOG4135 Predicted phosphogluco 72.2 5.7 0.00012 40.2 4.6 23 423-445 115-137 (185)
480 PF00004 AAA: ATPase family as 72.2 8.2 0.00018 35.5 5.6 35 81-118 1-35 (132)
481 TIGR02835 spore_sigmaE RNA pol 72.2 10 0.00022 39.9 6.9 53 662-714 177-233 (234)
482 PRK05298 excinuclease ABC subu 72.0 26 0.00056 43.0 11.1 68 55-128 11-78 (652)
483 TIGR02885 spore_sigF RNA polym 72.0 9.1 0.0002 40.0 6.4 49 662-710 182-230 (231)
484 PF00931 NB-ARC: NB-ARC domain 71.8 8.9 0.00019 40.7 6.4 66 65-131 5-74 (287)
485 TIGR02394 rpoS_proteo RNA poly 71.8 10 0.00022 41.2 7.0 52 662-713 221-276 (285)
486 PRK15429 formate hydrogenlyase 71.8 23 0.00049 43.5 10.6 21 183-203 471-491 (686)
487 PTZ00454 26S protease regulato 71.6 19 0.00041 41.6 9.4 19 78-96 179-197 (398)
488 PHA02244 ATPase-like protein 71.5 22 0.00049 40.9 9.7 24 180-203 178-201 (383)
489 TIGR02974 phageshock_pspF psp 71.5 30 0.00065 38.7 10.7 21 183-203 94-114 (329)
490 PF13555 AAA_29: P-loop contai 71.4 3.5 7.5E-05 35.7 2.6 17 80-96 25-41 (62)
491 PF14516 AAA_35: AAA-like doma 71.2 9.4 0.0002 42.6 6.7 60 66-127 21-85 (331)
492 PRK15201 fimbriae regulatory p 71.2 12 0.00026 39.1 6.8 47 661-708 131-177 (198)
493 TIGR00721 tfx DNA-binding prot 71.2 13 0.00029 36.9 7.0 52 662-714 5-56 (137)
494 cd03281 ABC_MSH5_euk MutS5 hom 71.0 5.4 0.00012 41.7 4.5 22 79-100 30-51 (213)
495 PRK13107 preprotein translocas 70.9 7 0.00015 49.3 6.0 54 82-136 99-152 (908)
496 PRK13894 conjugal transfer ATP 70.9 12 0.00026 41.9 7.4 40 57-102 133-172 (319)
497 KOG0328 Predicted ATP-dependen 70.6 1.3 2.9E-05 48.8 -0.1 63 57-126 50-114 (400)
498 TIGR03881 KaiC_arch_4 KaiC dom 70.6 8.1 0.00018 40.0 5.7 40 78-117 20-59 (229)
499 KOG0335 ATP-dependent RNA heli 70.3 6.2 0.00013 46.5 5.1 71 57-134 97-179 (482)
500 PF13476 AAA_23: AAA domain; P 70.3 5.1 0.00011 39.6 3.9 25 78-103 19-43 (202)
No 1
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=100.00 E-value=1.3e-257 Score=2122.74 Aligned_cols=809 Identities=57% Similarity=0.945 Sum_probs=763.7
Q ss_pred CCCccccccCCCCCccceecCCCCCccCCchhHHHHHHHHHhcccCCCCccccccCCcHHHHHHHHHHHHHHhccCCCcE
Q 003262 1 MDDELNVLPISSHIRSITAVPVKEDSEGLSEAERDLKDLKEQLCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKTLRST 80 (835)
Q Consensus 1 ~dDelnvlpis~~~~~i~~~~~~~~~~~~~~~~~~l~~lk~~l~~~~p~g~Lv~~~~T~DQakAl~~~~~~i~ek~~r~~ 80 (835)
|||||||||||+|+++|+|+|+ .++++.++.+.+|++|||++.|++|+|+|+++|+|.||++||++|+++|.+|++|++
T Consensus 199 ~DDeLnvLplssh~~nv~~~P~-~~~~~~~~~e~~lk~Lkesl~~~~P~G~Lv~~~kT~dQakav~~f~dai~eK~lr~~ 277 (1011)
T KOG2036|consen 199 LDDELNVLPLSSHIKNVEAVPP-KDDENLSPSERELKELKESLSDDQPAGPLVGLCKTLDQAKAVLTFFDAIVEKTLRST 277 (1011)
T ss_pred EcCccccccccccccccccCCC-cccccCChhhhhhHhhhhhhcCCCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhcce
Confidence 6999999999999999999999 456779999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCcceeEee
Q 003262 81 VALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRIN 160 (835)
Q Consensus 81 v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aivrvn 160 (835)
|+|||+|||||||||||+||+|+++||+|||||||||||++|||||++||||+|+|+||+||+||||+||+|++||||||
T Consensus 278 vsLtA~RGRGKSAALGlsiA~AVa~GysnIyvtSPspeNlkTlFeFv~kGfDaL~Yqeh~Dy~iI~s~np~fkkaivRIn 357 (1011)
T KOG2036|consen 278 VSLTASRGRGKSAALGLSIAGAVAFGYSNIYVTSPSPENLKTLFEFVFKGFDALEYQEHVDYDIIQSTNPDFKKAIVRIN 357 (1011)
T ss_pred EEEEecCCCCchhhhhHHHHHHHhcCcceEEEcCCChHHHHHHHHHHHcchhhhcchhhcchhhhhhcChhhhhhEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhhcCCeEEEEeeccCCcccCCchhHHHHHHhhhcCCCCC
Q 003262 161 IYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLGPYLVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMPA 240 (835)
Q Consensus 161 i~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~~y~vflsSTi~GYEGTGR~fsLKl~~~L~~~~~~~~ 240 (835)
|||+||||||||+|.|..+++||||||||||||||||+|++|+|||+|||||||||||||||+|||||+||||+|++.++
T Consensus 358 ifr~hrQtIQYi~P~D~~kl~q~eLlVIDEAAAIPLplvk~LigPylVfmaSTinGYEGTGRSlSlKLlqqLr~qs~~~~ 437 (1011)
T KOG2036|consen 358 IFREHRQTIQYISPHDHQKLGQAELLVIDEAAAIPLPLVKKLIGPYLVFMASTINGYEGTGRSLSLKLLQQLRKQSRASN 437 (1011)
T ss_pred EeccccceeEeeccchhhhccCCcEEEechhhcCCHHHHHHhhcceeEEEeecccccccccceehHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997643
Q ss_pred C--CcCCCccCCceeEEEeccccccCCCCchHHHHHHhcCCCCCCCCCCCCCCCCCCCcceEeeCcccccccCcCcHHHH
Q 003262 241 K--GVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLCLDVMNSIPHINRLPPPSECDLYYVNRDTLFSYHKESELFL 318 (835)
Q Consensus 241 ~--~~~~~~~~r~~~ei~L~ePIRya~gDPvE~WLn~lLcLDa~~~~~~~~~~p~p~~c~l~~Vnrd~Lfs~h~~sE~fL 318 (835)
. ...+...|+.++|++|+|||||++|||||+|||++|||||+...+...|||+|++|+|||||||+|||||++||.||
T Consensus 438 ~~~~k~~~~sg~~~kei~l~EsIRY~~gD~IE~WLn~lLcLDas~~~~~~~g~P~Ps~CeLyyVnRdtLFSyh~~sE~FL 517 (1011)
T KOG2036|consen 438 ARENKSSSKSGRTLKEISLEESIRYAPGDPIEKWLNRLLCLDASNCLPITSGCPSPSACELYYVNRDTLFSYHKASEAFL 517 (1011)
T ss_pred cccCcccccccceeccccccccccCCCCCcHHHHHhhhhhhccccCCcccCCCCChhHceEEEEcchhhhcCCchHHHHH
Confidence 3 11134468999999999999999999999999999999999866677899999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchh
Q 003262 319 QRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIP 398 (835)
Q Consensus 319 q~~~aLlV~AHYkNsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIP 398 (835)
|+||+|||+|||||||||||||+|||+||||||++|++++++.+|+||||||||+||.||+++++++|++|+|+.|||||
T Consensus 518 qr~mal~VSSHYKNSPNDLQllsDAPaH~LFvLl~PVd~~~~~iPdvlcviQv~lEG~isr~si~~sL~~G~~a~GdlIp 597 (1011)
T KOG2036|consen 518 QRLMALYVSSHYKNSPNDLQLLSDAPAHHLFVLLGPVDPSQNAIPDVLCVIQVCLEGRISRQSIENSLRRGKRAAGDLIP 597 (1011)
T ss_pred HHHHHHHHHHhccCCchhhhhhccCcccceEEEecCcCcccCCCCcceEEEEEeecceecHHHHHHHHhccccccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhccc
Q 003262 399 WKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLE 478 (835)
Q Consensus 399 w~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~ 478 (835)
|++|+||+|.+|+.++|+|||||||||+||+||||+|++++|.+||+|++++++|+. .+.+..+++|+++ ++++|++
T Consensus 598 W~vseQf~D~~F~~l~GaRIVRIAvhP~y~~MGYGsrAvqLL~~y~eG~~~~i~e~~--~~~~~~~k~v~e~-~~vslle 674 (1011)
T KOG2036|consen 598 WTVSEQFQDEDFPKLSGARIVRIAVHPEYQKMGYGSRAVQLLTDYFEGKFTSISEDV--LAVDHSIKRVEEA-EKVSLLE 674 (1011)
T ss_pred eehhhhhcccchhcccCceEEEEEeccchhccCccHHHHHHHHHHHhccCCCccccc--cccCccccccchh-hhhhhhh
Confidence 999999999999999999999999999999999999999999999999999998543 2334567788765 7899999
Q ss_pred ccccCCCCCCcccccccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCCccccccccc
Q 003262 479 ENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHSEDIEVNES 558 (835)
Q Consensus 479 e~i~~r~~~ppLl~~l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~~~~~~~~~~ 558 (835)
|.|+||++|||||.+|+||+|+++||+|||||+|++|++||+|+||+||||||+.|++||||||||||+|+.++
T Consensus 675 e~i~pR~~lppLL~~L~er~perldylGvSfGLT~~L~kFWk~~gF~PvylrQt~n~lTGEHtcimLk~L~~~e------ 748 (1011)
T KOG2036|consen 675 EQIKPRKDLPPLLLKLSERPPERLDYLGVSFGLTPSLLKFWKKNGFVPVYLRQTSNDLTGEHTCIMLKTLEGDE------ 748 (1011)
T ss_pred hhcccccCCCceeeEcccCCCcccceeeecccCCHHHHHHHHhcCceeEEeeccccccccceeEEEEecCCCcc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999654
Q ss_pred CccchHHHHHHHHHHHHHhhhhhccCCCCCHHHHHHhcCCcccCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhcCC
Q 003262 559 DEWGFFGPFYRDFKQRFFWLLVQHKLQRMDYKLLMSVLDPKINFKELDPRQDNSDKFLKSLTGVFSANDILRLKDYTNGL 638 (835)
Q Consensus 559 ~~~~wl~~~~~dF~~Rf~~lL~~~~fr~l~~~lal~lL~~~~~~~~~~~~~~~~~l~~~~~~~~ls~~Dl~rL~~ya~~~ 638 (835)
.+|+..|++||++||+.|| ++.|++|++.+|+++|++.+.+.+ ++.....++..+++.+|+|+|++||++|++|+
T Consensus 749 --~~wl~~f~qdFr~Rf~~lL-s~~F~~f~~~laLslL~~~~~~~~--~~~~~~~l~~~~l~~~fsp~Dl~Rl~~ys~n~ 823 (1011)
T KOG2036|consen 749 --SGWLGAFYQDFRRRFLKLL-SYDFKKFTAKLALSLLQNKNNGKE--VSTLSSVLTREELDGYFSPYDLKRLRSYSRNL 823 (1011)
T ss_pred --cchHHHHHHHHHHHHHHHh-hHHHhccCHHHHHHHhcccccCCC--CcccccccchHHhhcccChhhHHHHHHHhcCC
Confidence 7899999999999999999 999999999999999998877652 22334568888999999999999999999999
Q ss_pred cchhhhhchHHHHHHHHhhccCC-CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchH
Q 003262 639 IEHYAILDLVPRLAHLYFQEKLP-VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEISSE 717 (835)
Q Consensus 639 ~dy~~i~Dllp~La~lyf~~~l~-~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~~~~ 717 (835)
+|||+|.|++|.||++||.++++ +.||.+|++||||+|||+|+++.|++||+||++|++++|.|++|++++||+++.++
T Consensus 824 vD~~li~Dlip~ia~lYF~~klp~~~Ls~vq~siLL~lGlQ~k~vd~i~kel~Lp~~Q~~all~k~~kk~~~~~~~v~~~ 903 (1011)
T KOG2036|consen 824 VDFHLIVDLIPDIAHLYFEGKLPSVKLSVVQSSILLALGLQHKSVDAIEKELNLPSNQLLALLTKAMKKLSKYFDEVEEK 903 (1011)
T ss_pred chhhHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHhccccCCHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCcCCCccccccchhHHHHhhHHHHHHHHHHHHhccCCccccccccccCChhHHHHHHhcCCCCCCCCceEEE
Q 003262 718 EIKTAPPRLKEGAFEPHNISLDEDLNDGAEQFEEGMKTKMEGLLNPELLQQYAIVDKNADLEKALQSGGGKIAAGGVISV 797 (835)
Q Consensus 718 ~i~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~y~i~~~~~~~~~a~~~~~~~~~~~~~~~~ 797 (835)
+||++|++.++..++|+..+++|||+|+|+|+.+++|++++++++ ++|++|+|.|++++|.+|+.+.+.+ +..++||+
T Consensus 904 ~ie~~l~~~~~~~~e~~~~sl~~dl~e~ake~~~~~r~~~~~L~~-~~L~~y~i~gd~e~~a~~~~~~~~~-~~~~v~S~ 981 (1011)
T KOG2036|consen 904 AIEETLPREKDRVNEPTPVSLEDDLEEAAKEAEEQMREKQKELKA-EELDKYAIIGDEEEWAEALEKIGSS-GGIGVVSV 981 (1011)
T ss_pred HHHhhchhhhhhcCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhcCCHHHHHHHHhhhccc-ccceeEEe
Confidence 999999999988899999999999999999999999999999988 8999999999999999998763322 55789999
Q ss_pred ecCccccCCccccccccccccccCCCCCCCCccccc
Q 003262 798 KSSKSKIDKPAKHKESHQSGKKRNKDVSGSKSNKKR 833 (835)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (835)
|+++++ ++.+++.+|++.+.+.++|||.|
T Consensus 982 Ks~~kr-------~~~~~~~~k~~~~k~~~~~kk~~ 1010 (1011)
T KOG2036|consen 982 KSGKKR-------AAFDKSASKKKANKKPSKKKKFK 1010 (1011)
T ss_pred cccccc-------ccCChhhhhcccccCccchhhcc
Confidence 999877 35666777777777766666654
No 2
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=100.00 E-value=2.1e-141 Score=1228.32 Aligned_cols=560 Identities=35% Similarity=0.522 Sum_probs=505.0
Q ss_pred HHHHHhcccCCCCccccccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCcEEEecC
Q 003262 37 KDLKEQLCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-YSNIFVTAP 115 (835)
Q Consensus 37 ~~lk~~l~~~~p~g~Lv~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g-~~nI~VTAP 115 (835)
++.|+...+..+-++|+.+|+|.||++++..|...+..+. ++++|||+|||||||++||+++++...+ +.+|+||||
T Consensus 192 ~~~~~~~~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~--~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP 269 (758)
T COG1444 192 KERKKPPLDPVFPRELYELCLTEDQAEALEILERLLDAPK--RALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAP 269 (758)
T ss_pred ccccCCCCCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCC--ceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCC
Confidence 4556677777778889999999999999998888665543 3999999999999999999997777776 689999999
Q ss_pred ChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCC
Q 003262 116 SPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIP 195 (835)
Q Consensus 116 s~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIP 195 (835)
+|+|+++||+|+.+||++|||+.+++++...++++. ..+...|+|+.|+++. .+ +||||||||||||
T Consensus 270 ~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~~~~~-----------~~~~~~i~y~~P~~a~-~~-~DllvVDEAAaIp 336 (758)
T COG1444 270 TPANVQTLFEFAGKGLEFLGYKRKVAPDALGEIREV-----------SGDGFRIEYVPPDDAQ-EE-ADLLVVDEAAAIP 336 (758)
T ss_pred CHHHHHHHHHHHHHhHHHhCCccccccccccceeee-----------cCCceeEEeeCcchhc-cc-CCEEEEehhhcCC
Confidence 999999999999999999999999998876665432 2344459999999998 54 9999999999999
Q ss_pred HHHHHHhhcC-CeEEEEeeccCCcccCCchhHHHHHHhhhcCCCCCCCcCCCccCCceeEEEeccccccCCCCchHHHHH
Q 003262 196 LPVVRSLLGP-YLVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLN 274 (835)
Q Consensus 196 lpllk~Ll~~-y~vflsSTi~GYEGTGR~fsLKl~~~L~~~~~~~~~~~~~~~~~r~~~ei~L~ePIRya~gDPvE~WLn 274 (835)
+|+|++++.+ +.|+|||||||||||||||++||+++|++++. ..+++++|+|||||++|||||+|||
T Consensus 337 lplL~~l~~~~~rv~~sTTIhGYEGtGRgF~lkf~~~l~~~~~------------~~~~~~~l~ePIRya~gDPiE~wl~ 404 (758)
T COG1444 337 LPLLHKLLRRFPRVLFSTTIHGYEGTGRGFSLKFLARLRKQRD------------TTLHELELEEPIRYAPGDPIEKWLY 404 (758)
T ss_pred hHHHHHHHhhcCceEEEeeecccccCChHHHHHHHHHhccccc------------ceEEEEeccCCcccCCCCcHHHHHH
Confidence 9999999988 58999999999999999999999999998863 3599999999999999999999999
Q ss_pred HhcCCCCCCCCCCCCCCCC-CCCcceEeeCcccccccCcCcHHHHHHHHHHHHhcccCCChhHHHHhhcCCCceEEEEec
Q 003262 275 GLLCLDVMNSIPHINRLPP-PSECDLYYVNRDTLFSYHKESELFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLG 353 (835)
Q Consensus 275 ~lLcLDa~~~~~~~~~~p~-p~~c~l~~Vnrd~Lfs~h~~sE~fLq~~~aLlV~AHYkNsPnDLqlL~DaPah~lfvL~~ 353 (835)
++|||||++..... ++. ++.|-+++..++.+| +|++|+++|||||+||||||||||++|+|||+|++|++..
T Consensus 405 d~LLLdAEp~~~~~--~~~~~~~~~~~~~~~~~~~-----~ee~Lr~~~gllV~AHYRnsP~DL~~L~DaP~h~~~al~~ 477 (758)
T COG1444 405 DALLLDAEPAELEP--EDLRGSLEILEVDQRDLLF-----DEELLRQVYGLLVSAHYRNSPNDLRRLLDAPHHHIFALRA 477 (758)
T ss_pred HhhccCCCccCCCc--cccccceeeeeccHHhhhh-----CHHHHHHHHhHHhhhhccCCHHHHHHHhcCCCCeeEEEEc
Confidence 99999999855421 111 667766655666665 5999999999999999999999999999999999999996
Q ss_pred CCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChH
Q 003262 354 PVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYG 433 (835)
Q Consensus 354 p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyG 433 (835)
|. |.++||+||++||++++++|. .+.+|+||.||||||++++|+++.+|++++|+|||||||||++|+||||
T Consensus 478 ~~-------~~~va~~qva~EG~l~~~~i~-~~~~g~r~~GnlIp~~l~~~~~~~~fa~l~G~RIvRIAvhPe~q~~GiG 549 (758)
T COG1444 478 PE-------GKPVAVWQVAEEGGLSDELID-IWLGGRRPRGNLIPDLLAKHHRDPEFAKLVGWRIVRIAVHPELQRMGIG 549 (758)
T ss_pred CC-------CceEEEEEeeccCCCcHHHHH-HHhcCCCCCCcccHHHHHHhhcchhhcccceeeEEEEEeCHHHHhcCHH
Confidence 52 689999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccCCCCcceEEEecCCCH
Q 003262 434 STAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTL 513 (835)
Q Consensus 434 sraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~~~~lDylGvSFGlT~ 513 (835)
|++|+.+.++++ .++||+|||||+|+
T Consensus 550 srlL~~l~~~a~------------------------------------------------------~~~DwlgvsFG~t~ 575 (758)
T COG1444 550 SRLLALLIEEAR------------------------------------------------------KGLDWLGVSFGYTE 575 (758)
T ss_pred HHHHHHHHHHHh------------------------------------------------------cCCCEEeeccCCCH
Confidence 999999987652 46899999999999
Q ss_pred HHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCCcccccccccCccchHHHHHHHHHHHHHhhhhhccCCCCCHHHHH
Q 003262 514 DLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHSEDIEVNESDEWGFFGPFYRDFKQRFFWLLVQHKLQRMDYKLLM 593 (835)
Q Consensus 514 ~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~~~~~~~~~~~~~~wl~~~~~dF~~Rf~~lL~~~~fr~l~~~lal 593 (835)
+|++||.||||+||||++++|+.||||||||||||+..+ .+|+..+++.|++||+.+| ++.|++|+|++++
T Consensus 576 ~L~rFW~rnGF~pVhls~~rn~~SGeys~i~lkpLs~~~--------~~~~~~a~~~f~~rl~~~l-~~~~~dl~~~~~~ 646 (758)
T COG1444 576 ELLRFWLRNGFVPVHLSPTRNASSGEYTAIVLKPLSDAG--------KELVERANQEFRRRLLLLL-SDTYRDLEPELAR 646 (758)
T ss_pred HHHHHHHHcCeEEEEecCccCcCCCceeEEEEecCCHHH--------HHHHHHHHHHHHHHHHHHh-hhhhhcCCHHHHh
Confidence 999999999999999999999999999999999999876 7899999999999999999 9999999999999
Q ss_pred HhcCCcccCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhcCCcchhhhhchHHHHHHHHhhccCC--CCccHHHHHH
Q 003262 594 SVLDPKINFKELDPRQDNSDKFLKSLTGVFSANDILRLKDYTNGLIEHYAILDLVPRLAHLYFQEKLP--VTLSYVQAAV 671 (835)
Q Consensus 594 ~lL~~~~~~~~~~~~~~~~~l~~~~~~~~ls~~Dl~rL~~ya~~~~dy~~i~Dllp~La~lyf~~~l~--~~Ls~~q~~i 671 (835)
.+|++.... ......|+.++++|+++|++|.++|+++.|.+|.++..||....+ ..|+..+..+
T Consensus 647 lll~~~~~~--------------~~~~~~l~~~~~~rl~~y~~g~~~y~~~~d~i~~l~~~yf~~~~~~~~~L~~~~~~~ 712 (758)
T COG1444 647 LLLENATLS--------------DDDWPELTGFQLDRLELYASGPVLYELVADAIPLLLLAYFLDLQEDSPDLSEVEELV 712 (758)
T ss_pred hhhhccccC--------------CCCCcccchhHHHHHHHHhcCcccHHHHHHHHHHHHHHHhhccccCccccchHHHHH
Confidence 999873111 123356899999999999999999999999999999999987633 7899999999
Q ss_pred HHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 003262 672 LLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEIS 715 (835)
Q Consensus 672 Lla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~~ 715 (835)
|++++||.|+|+++|++++++.++++.++.+.+++++.++....
T Consensus 713 Li~~~lQ~k~w~~~a~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 756 (758)
T COG1444 713 LIGRVLQAKPWREVAKELGLASNDVMTILLKDLRKLLQEYHGLL 756 (758)
T ss_pred HHHHHHccCcHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999987653
No 3
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=100.00 E-value=2.8e-71 Score=561.32 Aligned_cols=196 Identities=50% Similarity=0.911 Sum_probs=137.8
Q ss_pred HHHHHHHhcccCCChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhH
Q 003262 320 RMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPW 399 (835)
Q Consensus 320 ~~~aLlV~AHYkNsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw 399 (835)
|+|+|||+|||||||||||+|+|||+|+||||+.|.+ |+|+||+|||+||+|+++++++++++++||+||||||
T Consensus 1 q~f~Llv~AHYrnsPnDL~~LlDaP~h~l~~l~~~~~------p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~ 74 (196)
T PF13718_consen 1 QLFGLLVSAHYRNSPNDLQLLLDAPNHRLFVLLQPGD------PDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQ 74 (196)
T ss_dssp HHHHHHHHCSSSB-HHHHHHHHH-TTEEEEEEE-SS--------SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHH
T ss_pred CeeeeeehhhcCCCHHHHHHHhcCCcceeehhccCCC------ceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHH
Confidence 6899999999999999999999999999999997632 8999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccc
Q 003262 400 KFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEE 479 (835)
Q Consensus 400 ~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e 479 (835)
+|++|+++++|++++|+|||||||||++|||||||++|+++++||+|++.+.+|.+
T Consensus 75 ~L~~~~~~~~f~~l~g~RIvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~------------------------ 130 (196)
T PF13718_consen 75 TLAQHFGDPEFAQLSGARIVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQD------------------------ 130 (196)
T ss_dssp HHHHHSS-TTGGGSEEEEEEEEEE-CCC-SSSHHHHHHHHHHHT------------------------------------
T ss_pred HHHHHhCCHHHHhhcceeEEEEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccc------------------------
Confidence 99999999999999999999999999999999999999999999999987765432
Q ss_pred cccCCCCCCcccccccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCC
Q 003262 480 NIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLH 549 (835)
Q Consensus 480 ~i~~r~~~ppLl~~l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~ 549 (835)
...+||||.++++++++++||+|||||+|++|++||+|+||+||||++++|+.||||||||+||||
T Consensus 131 ----~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~k~gf~pv~l~~~~n~~SGe~S~imlr~ls 196 (196)
T PF13718_consen 131 ----KEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQKNGFVPVYLGQTRNEASGEHSAIMLRPLS 196 (196)
T ss_dssp ---------------------S-SEEEEEEE--HHHHHHHHCTT-EEEEE-SS--TTT---EEEEEEE--
T ss_pred ----cccccccccccccccccCCCEEEeccCCCHHHHHHHHHCCcEEEEEecCcccccCceeeeEEeecC
Confidence 116799999999999999999999999999999999999999999999999999999999999986
No 4
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=100.00 E-value=5.2e-60 Score=473.41 Aligned_cols=175 Identities=54% Similarity=0.826 Sum_probs=112.3
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCcceeEeee
Q 003262 82 ALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINI 161 (835)
Q Consensus 82 ~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aivrvni 161 (835)
||||||||||||+||+++|+++..|+.||+||||+++|++++|+|+.++|+++||++..+.. ...+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~------------~~~~~~ 68 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKR------------IGQIIK 68 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC----------------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhccccccccccccc------------cccccc
Confidence 69999999999999999999999999999999999999999999999999999998733222 223344
Q ss_pred eeccceeEEeeCCcccccc-CCCcEEEEecccCCCHHHHHHhhc-CCeEEEEeeccCCcccCCchhHHHHHHhhhcCCCC
Q 003262 162 YRQHRQTIQYMEPHEHEKL-AQVELLVIDEAAAIPLPVVRSLLG-PYLVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMP 239 (835)
Q Consensus 162 ~~~hrq~Iqyi~P~d~~~l-~~adLLvIDEAAAIPlpllk~Ll~-~y~vflsSTi~GYEGTGR~fsLKl~~~L~~~~~~~ 239 (835)
++.++++|+|++||++... +++|+||||||||||+|+|++|+. ++.|||||||||||||||||++||+++|++..+
T Consensus 69 ~~~~~~~i~f~~Pd~l~~~~~~~DlliVDEAAaIp~p~L~~ll~~~~~vv~stTi~GYEGtGRgF~lkf~~~L~~~~~-- 146 (177)
T PF05127_consen 69 LRFNKQRIEFVAPDELLAEKPQADLLIVDEAAAIPLPLLKQLLRRFPRVVFSTTIHGYEGTGRGFSLKFLKQLKKHRP-- 146 (177)
T ss_dssp ----CCC--B--HHHHCCT----SCEEECTGGGS-HHHHHHHHCCSSEEEEEEEBSSTTBB-HHHHHHHHCT----ST--
T ss_pred cccccceEEEECCHHHHhCcCCCCEEEEechhcCCHHHHHHHHhhCCEEEEEeeccccccCCceeeeehhhhccccCC--
Confidence 5677999999999999775 579999999999999999999995 558999999999999999999999999988753
Q ss_pred CCCcCCCccCCceeEEEeccccccCCCCchHHHHHHhcCCC
Q 003262 240 AKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLCLD 280 (835)
Q Consensus 240 ~~~~~~~~~~r~~~ei~L~ePIRya~gDPvE~WLn~lLcLD 280 (835)
+.|++++|+|||||++|||||+|||++||||
T Consensus 147 ----------~~~~~~~L~~PIR~~~~DPlE~wl~~~llLd 177 (177)
T PF05127_consen 147 ----------RNWRELELSEPIRYAPGDPLEAWLNDLLLLD 177 (177)
T ss_dssp -----------TEEEEE--S-SSS-TT-HHHHHHHHHCT--
T ss_pred ----------CccEEEEcCCCccCCCcCcHHHHHHHhhCcC
Confidence 4799999999999999999999999999998
No 5
>PF13725 tRNA_bind_2: Possible tRNA binding domain; PDB: 2ZPA_B.
Probab=99.72 E-value=5e-18 Score=155.27 Aligned_cols=99 Identities=27% Similarity=0.435 Sum_probs=59.5
Q ss_pred HHHHHHhhhhhccCCCCCHHHHHHhcCCcccCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhcCCcchhhhhchHHH
Q 003262 571 FKQRFFWLLVQHKLQRMDYKLLMSVLDPKINFKELDPRQDNSDKFLKSLTGVFSANDILRLKDYTNGLIEHYAILDLVPR 650 (835)
Q Consensus 571 F~~Rf~~lL~~~~fr~l~~~lal~lL~~~~~~~~~~~~~~~~~l~~~~~~~~ls~~Dl~rL~~ya~~~~dy~~i~Dllp~ 650 (835)
|++||.++| ++.|++|+|. ++.. .....||++|++||++|++|.++|+.|.|+++.
T Consensus 1 F~~r~~~lL-~~~fr~L~~~----l~~~-------------------~~~~~ls~~d~~rL~~ya~g~~~y~~v~~~l~~ 56 (101)
T PF13725_consen 1 FRRRFPSLL-SDSFRDLEPE----LLKS-------------------ELDQSLSPIDLQRLERYARGGRDYESVAPALWR 56 (101)
T ss_dssp -HHHHHHHH-HHHTS--S-------S----------------------------HHHHHHHHHHHHS---TCCCHHHHHH
T ss_pred CcchHHHHh-CcHhhhCccc----cccc-------------------cccccCCHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 899999999 9999999998 2211 122468999999999999999999999866666
Q ss_pred HHHHHhhccCCCCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHH
Q 003262 651 LAHLYFQEKLPVTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADR 695 (835)
Q Consensus 651 La~lyf~~~l~~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q 695 (835)
|+..|+..+ +.||..|+++|+++|||+|||++||++||++|+|
T Consensus 57 l~~~~~~~~--~~Ls~~q~~lLi~k~LQ~ksw~~~a~~l~l~g~k 99 (101)
T PF13725_consen 57 LAFQYFLSP--VSLSELQQALLIAKGLQGKSWEEVAKELGLPGRK 99 (101)
T ss_dssp HHHH------------S--HHHHHHHCS---HHHHHHHCT-SSHH
T ss_pred HHHHccccc--hhhHHHHHHHHHHHHHCCCCHHHHHHHcCCCCCC
Confidence 666655544 7899999999999999999999999999999954
No 6
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=99.45 E-value=7.6e-13 Score=154.52 Aligned_cols=137 Identities=21% Similarity=0.258 Sum_probs=96.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCcceeE
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVR 158 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aivr 158 (835)
..-|+|++||||||+++|++++.++.+.-.+|+||||...+.+++|+++.+.|+++|-.. .| |+.+ .++.
T Consensus 188 ~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~--~f-------p~~~-~iv~ 257 (752)
T PHA03333 188 CYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKP--WF-------PEEF-KIVT 257 (752)
T ss_pred cceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhcccc--cc-------CCCc-eEEE
Confidence 456899999999999999999987773335899999999999999999999999876210 01 0000 1111
Q ss_pred eeeeeccceeEEeeCCcccc----------------ccCCCcEEEEecccCCCHHHHHHhhc------CCeEEEEeeccC
Q 003262 159 INIYRQHRQTIQYMEPHEHE----------------KLAQVELLVIDEAAAIPLPVVRSLLG------PYLVFLSSTVNG 216 (835)
Q Consensus 159 vni~~~hrq~Iqyi~P~d~~----------------~l~~adLLvIDEAAAIPlpllk~Ll~------~y~vflsSTi~G 216 (835)
.++.+..|.|..|+... +-..+|||||||||.||.+.+.+++. .-++|+||+.
T Consensus 258 ---vkgg~E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~~~l~aIlP~l~~~~~k~IiISS~~-- 332 (752)
T PHA03333 258 ---LKGTDENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNPGALLSVLPLMAVKGTKQIHISSPV-- 332 (752)
T ss_pred ---eeCCeeEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCHHHHHHHHHHHccCCCceEEEeCCC--
Confidence 12334556677665443 21347999999999999999999883 2367777774
Q ss_pred CcccCCchhHHHHHHhhh
Q 003262 217 YEGTGRSLSLKLLHQLEQ 234 (835)
Q Consensus 217 YEGTGR~fsLKl~~~L~~ 234 (835)
++-++ +=|+..|+.
T Consensus 333 ---~~~s~-tS~L~nLk~ 346 (752)
T PHA03333 333 ---DADSW-ISRVGEVKD 346 (752)
T ss_pred ---CcchH-HHHhhhhcc
Confidence 55555 344555654
No 7
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.74 E-value=1.4e-07 Score=96.54 Aligned_cols=156 Identities=22% Similarity=0.236 Sum_probs=94.3
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEY 136 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy 136 (835)
.|.+|.+|+..++. . ..+.++|+|+.|.|||++|...+..+...| .+|+++||+-.++..|-+-+. .++.
T Consensus 2 L~~~Q~~a~~~~l~---~--~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~apT~~Aa~~L~~~~~--~~a~-- 71 (196)
T PF13604_consen 2 LNEEQREAVRAILT---S--GDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGLAPTNKAAKELREKTG--IEAQ-- 71 (196)
T ss_dssp S-HHHHHHHHHHHH---C--TCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEEESSHHHHHHHHHHHT--S-EE--
T ss_pred CCHHHHHHHHHHHh---c--CCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEECCcHHHHHHHHHhhC--cchh--
Confidence 57899999987754 2 245889999999999999998766666667 689999999999999876532 1111
Q ss_pred cccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhhc---C--CeEEEE
Q 003262 137 KEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG---P--YLVFLS 211 (835)
Q Consensus 137 ~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~---~--y~vfls 211 (835)
. +.+ ... .........-..+...++||||||.+++.+.+..|+. . -.++|.
T Consensus 72 ------T-i~~----------------~l~-~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilv 127 (196)
T PF13604_consen 72 ------T-IHS----------------FLY-RIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILV 127 (196)
T ss_dssp ------E-HHH----------------HTT-EECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEE
T ss_pred ------h-HHH----------------HHh-cCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEE
Confidence 0 111 000 0000000000014456899999999999999988884 2 246677
Q ss_pred eeccCCcccCCchhHHHHHHhhhcCCCCCCCcCCCccCCceeEEEeccccccC
Q 003262 212 STVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYA 264 (835)
Q Consensus 212 STi~GYEGTGR~fsLKl~~~L~~~~~~~~~~~~~~~~~r~~~ei~L~ePIRya 264 (835)
.-.+=-...|.|=.+. .+.+.. . ..++|++..|..
T Consensus 128 GD~~QL~pV~~g~~~~---~l~~~~-------------~--~~~~L~~i~Rq~ 162 (196)
T PF13604_consen 128 GDPNQLPPVGAGSPFA---DLQESG-------------G--ITVELTEIRRQK 162 (196)
T ss_dssp E-TTSHHHCSTTCHHH---HHCGCS-------------T--TEEEE---SCCC
T ss_pred CCcchhcCCcCCcHHH---HHHhcC-------------C--CeEEeChhhcCC
Confidence 7766555555554333 333222 1 178999999997
No 8
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.60 E-value=7.5e-07 Score=105.21 Aligned_cols=200 Identities=19% Similarity=0.169 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC----CcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 59 LDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGY----SNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 59 ~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~----~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
..|..|+..++. ++.++|||+.|.|||+++.-.++.+...+. .+|.+|||+-.+++.|-|-+...+..+
T Consensus 148 ~~Qk~A~~~al~-------~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l 220 (586)
T TIGR01447 148 NWQKVAVALALK-------SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNL 220 (586)
T ss_pred HHHHHHHHHHhh-------CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccc
Confidence 456667765544 468999999999999999888877765432 479999999999999999887766555
Q ss_pred cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhhc---CC-eEEE
Q 003262 135 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG---PY-LVFL 210 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~---~y-~vfl 210 (835)
+..+.....+ |.....|.|.--.+.......|. ....-..|+||||||.||+++++.+|+. +. .++|
T Consensus 221 ~~~~~~~~~~-----~~~a~TiHrlLg~~~~~~~~~~~----~~~~l~~dvlIiDEaSMvd~~l~~~ll~al~~~~rlIl 291 (586)
T TIGR01447 221 AAAEALIAAL-----PSEAVTIHRLLGIKPDTKRFRHH----ERNPLPLDVLVVDEASMVDLPLMAKLLKALPPNTKLIL 291 (586)
T ss_pred ccchhhhhcc-----ccccchhhhhhcccCCcchhhhc----ccCCCcccEEEEcccccCCHHHHHHHHHhcCCCCEEEE
Confidence 4322111111 11111222221111111011110 0111257999999999999999999984 33 4555
Q ss_pred EeeccCCcccCCchhHHHHHHhhhcCC-----CCCC--CcCCCccCCcee--EEEeccccccCCCCchHHHHH
Q 003262 211 SSTVNGYEGTGRSLSLKLLHQLEQQSH-----MPAK--GVEGSAHGCLFK--KIELSESIRYAPGDPIESWLN 274 (835)
Q Consensus 211 sSTi~GYEGTGR~fsLKl~~~L~~~~~-----~~~~--~~~~~~~~r~~~--ei~L~ePIRya~gDPvE~WLn 274 (835)
..-.+=---.|-|--|+=+-+...... .... ..........+. -++|++.-|.+.+-.|-..-+
T Consensus 292 vGD~~QLpsV~~G~vl~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~~~R~~~~S~I~~lA~ 364 (586)
T TIGR01447 292 LGDKNQLPSVEAGAVLGDLCELASIGYLFQSAQAYALCKKINSKTRNPLSDNVCFLKTSHRFGKDSGIGQLAK 364 (586)
T ss_pred ECChhhCCCCCCChhHHHHHHhhccccchhhhhhhcccccccccccCCCCCcEEEeceeecCCCCccHHHHHH
Confidence 443332222222222211111110000 0000 000000011234 789999999998867665433
No 9
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.59 E-value=1.4e-07 Score=111.75 Aligned_cols=202 Identities=19% Similarity=0.237 Sum_probs=118.2
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC---CCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 58 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG---YSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 58 T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g---~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
+..|..|+...+. ++.++|||+.|.|||+++--.++.++..+ ..+|.++||+-.+.+.|-|-+...++.+
T Consensus 154 ~d~Qk~Av~~a~~-------~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~ 226 (615)
T PRK10875 154 VDWQKVAAAVALT-------RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQL 226 (615)
T ss_pred CHHHHHHHHHHhc-------CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcc
Confidence 4678888865533 46899999999999999988888777642 3579999999999999999988777666
Q ss_pred cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhhc---CC-eEEE
Q 003262 135 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG---PY-LVFL 210 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~---~y-~vfl 210 (835)
+..+.....+ |.....|+|.-..+.......|-... .-.+|+||||||.+|.++++..|+. +. .++|
T Consensus 227 ~~~~~~~~~~-----~~~a~TiHrlLg~~~~~~~~~~~~~~----~l~~dvlIvDEaSMvd~~lm~~ll~al~~~~rlIl 297 (615)
T PRK10875 227 PLTDEQKKRI-----PEEASTLHRLLGAQPGSQRLRYHAGN----PLHLDVLVVDEASMVDLPMMARLIDALPPHARVIF 297 (615)
T ss_pred ccchhhhhcC-----CCchHHHHHHhCcCCCccchhhcccc----CCCCCeEEEChHhcccHHHHHHHHHhcccCCEEEE
Confidence 5433222111 11122333332222222222222111 1257999999999999999999984 22 4555
Q ss_pred EeeccCCcccCC-------------chhHHHHHHhhhcCCCCCCCcCCCccCCce--eEEEeccccccCCCCchHHHHHH
Q 003262 211 SSTVNGYEGTGR-------------SLSLKLLHQLEQQSHMPAKGVEGSAHGCLF--KKIELSESIRYAPGDPIESWLNG 275 (835)
Q Consensus 211 sSTi~GYEGTGR-------------~fsLKl~~~L~~~~~~~~~~~~~~~~~r~~--~ei~L~ePIRya~gDPvE~WLn~ 275 (835)
-.-.+=---.|- |++-+..++|.+........... ...+.+ .-+.|++.-|++.+-.|-..-+.
T Consensus 298 vGD~~QL~sV~~G~VL~DL~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~Rf~~~SgI~~lA~~ 376 (615)
T PRK10875 298 LGDRDQLASVEAGAVLGDICRFAEAGYSAERAQQLSRLTGCHLPAGTG-TEAASVRDSLCLLRKSYRFGSDSGIGQLAAA 376 (615)
T ss_pred ecchhhcCCCCCCchHHHHHHhhhcccchhhhhHHhhhcccccccccc-ccCCccccceeecceeecCCCCCcHHHHHHH
Confidence 333222222222 24444444554333110000000 000111 12578888999888777665544
Q ss_pred h
Q 003262 276 L 276 (835)
Q Consensus 276 l 276 (835)
.
T Consensus 377 I 377 (615)
T PRK10875 377 V 377 (615)
T ss_pred H
Confidence 4
No 10
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.44 E-value=2.9e-06 Score=102.52 Aligned_cols=171 Identities=25% Similarity=0.306 Sum_probs=108.1
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCcEEEecCChHhHHHHHHHHHhhhcc
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-YSNIFVTAPSPENLKTLFEFVCKGFNA 133 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g-~~nI~VTAPs~enl~tlFef~~kgl~~ 133 (835)
...+.+|.+|+..+.. ++.++|||+.|.|||+++...+..+-..| ..+|+++||+..+.+.|-+-. |.++
T Consensus 322 ~~l~~~Q~~Ai~~~~~-------~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~--g~~a 392 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQ-------HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVT--GLTA 392 (720)
T ss_pred CCCCHHHHHHHHHHHh-------CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhc--CCcc
Confidence 4578899999876632 35899999999999999987777666665 358999999999999875432 2111
Q ss_pred ccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhhc---CC-eEE
Q 003262 134 IEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG---PY-LVF 209 (835)
Q Consensus 134 lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~---~y-~vf 209 (835)
.-+...+.+ .++ . ...........+|+||||||.+++.+++..|+. +. .++
T Consensus 393 ~Tih~lL~~------~~~--------------~-----~~~~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~~~~~rli 447 (720)
T TIGR01448 393 STIHRLLGY------GPD--------------T-----FRHNHLEDPIDCDLLIVDESSMMDTWLALSLLAALPDHARLL 447 (720)
T ss_pred ccHHHHhhc------cCC--------------c-----cchhhhhccccCCEEEEeccccCCHHHHHHHHHhCCCCCEEE
Confidence 100000000 000 0 000001112368999999999999999999984 22 455
Q ss_pred EEeeccCCcccCCchhHHHHHHhhhcCCCCCCCcCCCccCCceeEEEeccccccCCCCchHHHHHHh
Q 003262 210 LSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGL 276 (835)
Q Consensus 210 lsSTi~GYEGTGR~fsLKl~~~L~~~~~~~~~~~~~~~~~r~~~ei~L~ePIRya~gDPvE~WLn~l 276 (835)
|..-.+=----|.|-.++ .|-.. ..+..++|++..|.+.+.++=...+.+
T Consensus 448 lvGD~~QLpsV~~G~v~~---dl~~~--------------~~~~~~~L~~i~RQ~~~s~i~~~a~~i 497 (720)
T TIGR01448 448 LVGDTDQLPSVGPGQVLK---DLILS--------------QAIPVTRLTKVYRQAAGSPIITLAHGI 497 (720)
T ss_pred EECccccccCCCCCchHH---HHHhc--------------CCCCEEEeCeeeccCCCcHHHHHHHHH
Confidence 655544433344443322 22111 124578999999999998887766655
No 11
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.42 E-value=3.5e-06 Score=76.57 Aligned_cols=88 Identities=20% Similarity=0.279 Sum_probs=66.2
Q ss_pred CChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCCC
Q 003262 332 NSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFP 411 (835)
Q Consensus 332 NsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~ 411 (835)
.+++++..+.+.+.+.+||+.. + .+|+|.+.+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~v~~~-----~---~~ivG~~~~~--------------------------------------- 62 (117)
T PF13673_consen 30 YSPEDLEEYLEEGSHTIFVAEE-----G---GEIVGFAWLE--------------------------------------- 62 (117)
T ss_dssp SSHHHHHHHHCTCCCEEEEEEE-----T---TEEEEEEEEE---------------------------------------
T ss_pred cCHHHHHHHHHhcCCEEEEEEE-----C---CEEEEEEEEc---------------------------------------
Confidence 6789999888888899998862 2 3688887632
Q ss_pred CCcccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccc
Q 003262 412 SLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLL 491 (835)
Q Consensus 412 ~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl 491 (835)
...+|..+.|+|+|||+|+|+++++.+.+.++.
T Consensus 63 --~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~--------------------------------------------- 95 (117)
T PF13673_consen 63 --PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD--------------------------------------------- 95 (117)
T ss_dssp --TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT---------------------------------------------
T ss_pred --CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc---------------------------------------------
Confidence 011288899999999999999999998876531
Q ss_pred ccccccCCCCcceEEEecCCCHHHHHHHHHCCC
Q 003262 492 VHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKF 524 (835)
Q Consensus 492 ~~l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF 524 (835)
++.++.+. .+....+||++.||
T Consensus 96 ---------~~~~l~~~--~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 96 ---------GIRRLTVE--ANERARRFYRKLGF 117 (117)
T ss_dssp ---------TCEEEEEE--C-HHHHHHHHHTT-
T ss_pred ---------CCcEEEEE--eCHHHHHHHHhCCC
Confidence 44566666 68999999999998
No 12
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.30 E-value=1.7e-05 Score=72.73 Aligned_cols=77 Identities=19% Similarity=0.281 Sum_probs=56.0
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccc
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLR 495 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~ 495 (835)
..|..++|+|+|||+|||+.+++.+.+++.....
T Consensus 55 ~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~---------------------------------------------- 88 (131)
T TIGR01575 55 AHILNIAVKPEYQGQGIGRALLRELIDEAKGRGV---------------------------------------------- 88 (131)
T ss_pred eEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCC----------------------------------------------
Confidence 3588999999999999999999999987742110
Q ss_pred ccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEE
Q 003262 496 ERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMV 544 (835)
Q Consensus 496 e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IM 544 (835)
.. =++.+. -.+....+||+|+||.++.....+....++|.++|
T Consensus 89 ----~~-i~~~~~-~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~~~~~~~ 131 (131)
T TIGR01575 89 ----NE-IFLEVR-VSNIAAQALYKKLGFNEIAIRRNYYPDPGEDAIVM 131 (131)
T ss_pred ----Ce-EEEEEe-cccHHHHHHHHHcCCCccccccccccCCCcccccC
Confidence 00 022222 22577899999999999988777654434888877
No 13
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=98.22 E-value=9.9e-07 Score=85.89 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=60.5
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHhcccc--cccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccc
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLT--TFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLV 492 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~--~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~ 492 (835)
.+.|..|||||+|||+|+|+++++.+.+.+..+.. .+. .++
T Consensus 91 ~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~----------L~V--------------------------- 133 (177)
T COG0456 91 EGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIV----------LEV--------------------------- 133 (177)
T ss_pred ccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEE----------EEE---------------------------
Confidence 46899999999999999999999998887753321 000 011
Q ss_pred cccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCC
Q 003262 493 HLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLH 549 (835)
Q Consensus 493 ~l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~ 549 (835)
+.+ +...++||+|.||..+..+..++...++.+.+|++.+.
T Consensus 134 -----~~~-----------N~~Ai~lY~~~GF~~~~~~~~yy~~~~~~a~~~~~~~~ 174 (177)
T COG0456 134 -----RES-----------NEAAIGLYRKLGFEVVKIRKNYYADGNGDALLMLKMLN 174 (177)
T ss_pred -----ecC-----------ChHHHHHHHHcCCEEEeeehhhccCCcchhHHHHHhhh
Confidence 111 46899999999999999999888754444777766543
No 14
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=98.19 E-value=2.3e-06 Score=74.02 Aligned_cols=30 Identities=27% Similarity=0.177 Sum_probs=26.6
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHH
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYY 444 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~ 444 (835)
.++|.+++|||+|||+|||+++|+.+.+.+
T Consensus 26 ~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~ 55 (79)
T PF13508_consen 26 FAYIGYLAVDPEYRGKGIGSKLLNYLLEKA 55 (79)
T ss_dssp EEEEEEEEE-GGGTTSSHHHHHHHHHHHHH
T ss_pred EEEEEEEEECHHHcCCCHHHHHHHHHHHHc
Confidence 459999999999999999999999998776
No 15
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.16 E-value=1.5e-05 Score=76.89 Aligned_cols=147 Identities=23% Similarity=0.242 Sum_probs=86.9
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-YSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g-~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
..+..|.+++..+.+.. ..++++++.|.|||.++-..+...+..+ ..+++|++|+...+..++..+.+-+...
T Consensus 8 ~~~~~Q~~~~~~~~~~~------~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 8 PLRPYQKEAIEALLSGL------RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCHHHHHHHHHHHcCC------CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 35788999887665421 5789999999999997776666665543 5689999999998888887776544322
Q ss_pred cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc--------ccCCCcEEEEecccCCCH----HHHHHh
Q 003262 135 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIPL----PVVRSL 202 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~--------~l~~adLLvIDEAAAIPl----pllk~L 202 (835)
... ...+..+..+ ...+.+ .......+.+..++.+. .....+++|||||-.++. ..+..+
T Consensus 82 ~~~---~~~~~~~~~~--~~~~~~---~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 82 GLK---VVGLYGGDSK--REQLRK---LESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred CeE---EEEEeCCcch--HHHHHH---HhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 100 0011111000 000000 00000033344433221 223578999999999885 555555
Q ss_pred hc-----CCeEEEEeeccC
Q 003262 203 LG-----PYLVFLSSTVNG 216 (835)
Q Consensus 203 l~-----~y~vflsSTi~G 216 (835)
+. ..+++||+|...
T Consensus 154 ~~~~~~~~~~v~~saT~~~ 172 (201)
T smart00487 154 LKLLPKNVQLLLLSATPPE 172 (201)
T ss_pred HHhCCccceEEEEecCCch
Confidence 53 447788888754
No 16
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=98.13 E-value=3e-05 Score=96.32 Aligned_cols=152 Identities=24% Similarity=0.261 Sum_probs=101.6
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccc
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 135 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lg 135 (835)
..|.+|..||..++. . +..++|||.-|.|||++|+.++..+-+.|+ +|+++||+-.+++.|-+-. |..+.
T Consensus 346 ~Ls~eQr~Av~~il~----s--~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~-~V~~~ApTGkAA~~L~e~t--Gi~a~- 415 (988)
T PRK13889 346 VLSGEQADALAHVTD----G--RDLGVVVGYAGTGKSAMLGVAREAWEAAGY-EVRGAALSGIAAENLEGGS--GIASR- 415 (988)
T ss_pred CCCHHHHHHHHHHhc----C--CCeEEEEeCCCCCHHHHHHHHHHHHHHcCC-eEEEecCcHHHHHHHhhcc--Ccchh-
Confidence 479999999876542 1 236789999999999999987777767786 7999999999998875421 21110
Q ss_pred ccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhhc---C--CeEEE
Q 003262 136 YKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG---P--YLVFL 210 (835)
Q Consensus 136 y~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~---~--y~vfl 210 (835)
.|.+. . + .|- +. -..+...+|||||||.+++..++..|+. + -.|+|
T Consensus 416 -------------------TI~sl---l-~----~~~-~~-~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~~garvVL 466 (988)
T PRK13889 416 -------------------TIASL---E-H----GWG-QG-RDLLTSRDVLVIDEAGMVGTRQLERVLSHAADAGAKVVL 466 (988)
T ss_pred -------------------hHHHH---H-h----hhc-cc-ccccccCcEEEEECcccCCHHHHHHHHHhhhhCCCEEEE
Confidence 00000 0 0 000 00 1124467999999999999999999984 1 25667
Q ss_pred EeeccCCcccCCchhHHHHHHhhhcCCCCCCCcCCCccCCceeEEEeccccccCC
Q 003262 211 SSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAP 265 (835)
Q Consensus 211 sSTi~GYEGTGR~fsLKl~~~L~~~~~~~~~~~~~~~~~r~~~ei~L~ePIRya~ 265 (835)
..-..=--..|.|-.++.+.+ .. ..++|++-.|...
T Consensus 467 VGD~~QLpsV~aG~~f~~L~~---~~----------------~~a~LteI~RQ~~ 502 (988)
T PRK13889 467 VGDPQQLQAIEAGAAFRSIHE---RH----------------GGAEIGEVRRQRE 502 (988)
T ss_pred ECCHHHcCCCCCCchHHHHHH---hc----------------CeEEeceeecCCC
Confidence 666655666666766555532 11 1378999999864
No 17
>PTZ00330 acetyltransferase; Provisional
Probab=98.02 E-value=5.1e-05 Score=71.82 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=27.8
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
...|..+.|||+|||+|||+++++.+.+++.
T Consensus 82 ~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~ 112 (147)
T PTZ00330 82 VGHIEDVVVDPSYRGQGLGRALISDLCEIAR 112 (147)
T ss_pred eEEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 3578899999999999999999999998864
No 18
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.00 E-value=5.4e-05 Score=92.02 Aligned_cols=153 Identities=20% Similarity=0.189 Sum_probs=100.6
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
...|.+|..|+..++. . .+.++|||+.|.|||+++.-.+..+-..|+ +|.++||+-.+.+.|-+-. |.++.
T Consensus 351 ~~Ls~~Q~~Av~~i~~----s--~~~~il~G~aGTGKTtll~~i~~~~~~~g~-~V~~~ApTg~Aa~~L~~~~--g~~a~ 421 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTG----S--GDIAVVVGRAGTGKSTMLKAAREAWEAAGY-RVIGAALSGKAAEGLQAES--GIESR 421 (744)
T ss_pred CCCCHHHHHHHHHHhc----C--CCEEEEEecCCCCHHHHHHHHHHHHHhCCC-eEEEEeCcHHHHHHHHhcc--CCcee
Confidence 4579999999876542 1 347899999999999999987777766775 7999999999988875421 22110
Q ss_pred cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhhc----C-CeEE
Q 003262 135 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG----P-YLVF 209 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~----~-y~vf 209 (835)
+ | ++. ...| ......+..+||||||||.+++...+..|+. + -.|+
T Consensus 422 --------T------------i-----~~~---~~~~--~~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~~~~kli 471 (744)
T TIGR02768 422 --------T------------L-----ASL---EYAW--ANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEEAGAKVV 471 (744)
T ss_pred --------e------------H-----HHH---Hhhh--ccCcccCCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEE
Confidence 0 0 000 0001 0111224578999999999999999999985 1 1456
Q ss_pred EEeeccCCcccCCchhHHHHHHhhhcCCCCCCCcCCCccCCceeEEEeccccccCC
Q 003262 210 LSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAP 265 (835)
Q Consensus 210 lsSTi~GYEGTGR~fsLKl~~~L~~~~~~~~~~~~~~~~~r~~~ei~L~ePIRya~ 265 (835)
|..-.+=-.-.|.|-.++.+.+ . ...++|++-.|...
T Consensus 472 LVGD~~QLpsVgaG~~f~~l~~---~----------------~~~~~Lt~I~RQ~~ 508 (744)
T TIGR02768 472 LVGDPEQLQPIEAGAAFRAIAE---R----------------IGYAELETIRRQRE 508 (744)
T ss_pred EECChHHccccccCcHHHHHHH---h----------------hCeEEeeeEEecCC
Confidence 6655444554555544443332 1 12478999999874
No 19
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=98.00 E-value=6.4e-05 Score=94.06 Aligned_cols=153 Identities=16% Similarity=0.191 Sum_probs=107.3
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
...|.+|..||..+. .. .+.++|+|.-|.|||++|+.++..+-+.|+ +|+.+||+-.+.+.|-+.. |+++-
T Consensus 380 ~~Ls~eQ~~Av~~i~----~~--~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~-~V~g~ApTgkAA~~L~e~~--Gi~a~ 450 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA----GP--ARIAAVVGRAGAGKTTMMKAAREAWEAAGY-RVVGGALAGKAAEGLEKEA--GIQSR 450 (1102)
T ss_pred CCCCHHHHHHHHHHh----cc--CCeEEEEeCCCCCHHHHHHHHHHHHHHcCC-eEEEEcCcHHHHHHHHHhh--CCCee
Confidence 357999999987653 21 458899999999999999998877777886 7999999999999986543 22110
Q ss_pred cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhhc-----CCeEE
Q 003262 135 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG-----PYLVF 209 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~-----~y~vf 209 (835)
+ +.+ | -..|-... ..+...++||||||.+++...+..|+. ...|+
T Consensus 451 --------T-Ias--------------~-----ll~~~~~~--~~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~~~garvV 500 (1102)
T PRK13826 451 --------T-LSS--------------W-----ELRWNQGR--DQLDNKTVFVLDEAGMVASRQMALFVEAVTRAGAKLV 500 (1102)
T ss_pred --------e-HHH--------------H-----HhhhccCc--cCCCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEE
Confidence 0 000 0 00000011 124457899999999999999999884 13577
Q ss_pred EEeeccCCcccCCchhHHHHHHhhhcCCCCCCCcCCCccCCceeEEEeccccccCC
Q 003262 210 LSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAP 265 (835)
Q Consensus 210 lsSTi~GYEGTGR~fsLKl~~~L~~~~~~~~~~~~~~~~~r~~~ei~L~ePIRya~ 265 (835)
|..-..=....|.|-.++.+.+ . +.-++|++..|...
T Consensus 501 LVGD~~QL~~V~aG~~f~~l~~---~----------------i~~a~LteI~RQ~~ 537 (1102)
T PRK13826 501 LVGDPEQLQPIEAGAAFRAIAD---R----------------IGYAELETIYRQRE 537 (1102)
T ss_pred EECCHHHcCCCCCCcHHHHHHh---h----------------cCEEEeeeeeecCC
Confidence 7877777777777776666653 1 12488999999864
No 20
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=97.91 E-value=1.5e-05 Score=75.27 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=27.3
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
+.|.+|+|||+|||+|||+.+++.+.++..
T Consensus 77 ~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~ 106 (144)
T PRK10146 77 GEIQELVVMPQARGLNVGSKLLAWAEEEAR 106 (144)
T ss_pred heeheeEECHHHcCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999998764
No 21
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=97.91 E-value=0.00011 Score=87.23 Aligned_cols=128 Identities=27% Similarity=0.320 Sum_probs=89.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCcc
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKP 155 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~a 155 (835)
++.-|.+.+|=-|||..++..++.++.. | .+|.+|||.....+.+|+-+...++.-.+.+.. +.+. ...
T Consensus 254 qk~tVflVPRR~GKTwivv~iI~~ll~s~~G-i~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v--~~vk------Ge~ 324 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLVPLIALALATFRG-IKIGYTAHIRKATEPVFEEIGARLRQWFGASRV--DHVK------GET 324 (738)
T ss_pred ccceEEEecccCCchhhHHHHHHHHHHhCCC-CEEEEEcCcHHHHHHHHHHHHHHHhhhcchhhe--eeec------CcE
Confidence 3455788999999999999666655533 5 589999999999999999998877654333222 1121 122
Q ss_pred eeEeeeee-ccceeEEeeCCccc--cccCCCcEEEEecccCCCHHHHHHhhc------CCeEEEEeeccC
Q 003262 156 IVRINIYR-QHRQTIQYMEPHEH--EKLAQVELLVIDEAAAIPLPVVRSLLG------PYLVFLSSTVNG 216 (835)
Q Consensus 156 ivrvni~~-~hrq~Iqyi~P~d~--~~l~~adLLvIDEAAAIPlpllk~Ll~------~y~vflsSTi~G 216 (835)
| +-.|+ +.+.+|+|.+-..- .+=...||||||||+=|+-..+..+++ +-.+|+|||..|
T Consensus 325 I--~i~f~nG~kstI~FaSarntNsiRGqtfDLLIVDEAqFIk~~al~~ilp~l~~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 325 I--SFSFPDGSRSTIVFASSHNTNGIRGQDFNLLFVDEANFIRPDAVQTIMGFLNQTNCKIIFVSSTNTG 392 (738)
T ss_pred E--EEEecCCCccEEEEEeccCCCCccCCcccEEEEechhhCCHHHHHHHHHHHhccCccEEEEecCCCC
Confidence 3 22344 33469999733221 222359999999999999999999983 447888998765
No 22
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=97.89 E-value=6.7e-05 Score=71.66 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=26.1
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 417 RIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 417 RIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.+..|+|+|+|||+|||+++++.+.+++.
T Consensus 65 ~~~~i~v~~~~rg~G~g~~ll~~~~~~~~ 93 (146)
T PRK09491 65 TLFNIAVDPDYQRQGLGRALLEHLIDELE 93 (146)
T ss_pred EEEEEEECHHHccCCHHHHHHHHHHHHHH
Confidence 57789999999999999999999998763
No 23
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=97.88 E-value=3.4e-05 Score=65.96 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=30.3
Q ss_pred CcccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 413 LSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 413 lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
-..+-|.+++|+|+|||+|+|+++++.+.++..
T Consensus 23 ~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~ 55 (83)
T PF00583_consen 23 GNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWAR 55 (83)
T ss_dssp TTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHH
Confidence 467899999999999999999999999998875
No 24
>PRK10314 putative acyltransferase; Provisional
Probab=97.85 E-value=1.7e-05 Score=78.07 Aligned_cols=31 Identities=10% Similarity=-0.037 Sum_probs=28.0
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.+.|-||||+|+|||+|||+++|+.+.+++.
T Consensus 74 ~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~ 104 (153)
T PRK10314 74 PVVIGRVIVSEALRGEKVGQQLMSKTLESCT 104 (153)
T ss_pred CEEEEEEEECHHHhCCCHHHHHHHHHHHHHH
Confidence 3699999999999999999999998888764
No 25
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.79 E-value=0.00015 Score=95.94 Aligned_cols=151 Identities=17% Similarity=0.240 Sum_probs=103.2
Q ss_pred ccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcc
Q 003262 54 KKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNA 133 (835)
Q Consensus 54 ~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~ 133 (835)
....+.+|..|+..++. . ..+.++|+|..|.|||+++.-.+..+-+.|+ +|.+.||+-.+.+.|-+-+. .++
T Consensus 427 ~~~Ls~~Q~~Av~~il~---s--~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~-~V~~lAPTgrAA~~L~e~~g--~~A 498 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFT---S--TKRFIIINGFGGTGSTEIAQLLLHLASEQGY-EIQIITAGSLSAQELRQKIP--RLA 498 (1960)
T ss_pred cCCCCHHHHHHHHHHHh---C--CCCeEEEEECCCCCHHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHhc--chh
Confidence 45789999999987654 2 2468999999999999999988877777786 79999999999999987542 221
Q ss_pred ccccccccceeeecCCCCCCcceeEeeeeeccceeEE-eeCCccccccCCCcEEEEecccCCCHHHHHHhhc----C-Ce
Q 003262 134 IEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQ-YMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG----P-YL 207 (835)
Q Consensus 134 lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iq-yi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~----~-y~ 207 (835)
.-....+. .. .+++ ...|++ |... ...+...++||||||.++....+..|+. + -.
T Consensus 499 ~Ti~~~l~-~l---~~~~-------------~~~tv~~fl~~--~~~l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~~gar 559 (1960)
T TIGR02760 499 STFITWVK-NL---FNDD-------------QDHTVQGLLDK--SSPFSNKDIFVVDEANKLSNNELLKLIDKAEQHNSK 559 (1960)
T ss_pred hhHHHHHH-hh---cccc-------------cchhHHHhhcc--cCCCCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCE
Confidence 10000000 00 0000 001111 2211 1124568999999999999999999994 1 26
Q ss_pred EEEEeeccCCcccCCchhHHHHHH
Q 003262 208 VFLSSTVNGYEGTGRSLSLKLLHQ 231 (835)
Q Consensus 208 vflsSTi~GYEGTGR~fsLKl~~~ 231 (835)
|+|-.-.+.--+.|.|=.|++++.
T Consensus 560 vVlvGD~~QL~sV~aG~~f~~L~~ 583 (1960)
T TIGR02760 560 LILLNDSAQRQGMSAGSAIDLLKE 583 (1960)
T ss_pred EEEEcChhhcCccccchHHHHHHH
Confidence 778889999999777777776554
No 26
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=97.73 E-value=0.00057 Score=73.03 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=57.1
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccc
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHL 494 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l 494 (835)
.+.|..|+|||+|||+|||+++|+.+.+++......
T Consensus 183 ~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~-------------------------------------------- 218 (266)
T TIGR03827 183 NAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIR-------------------------------------------- 218 (266)
T ss_pred cEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCc--------------------------------------------
Confidence 367899999999999999999999998876422110
Q ss_pred cccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCC--CceEEEEccC
Q 003262 495 RERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTG--EHTCMVLKPL 548 (835)
Q Consensus 495 ~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TG--EhS~IMlr~L 548 (835)
.+ |+- ....+....+||+|+||.......+.....| |..-||.|+|
T Consensus 219 ------~l-~~~-~~~~n~~a~~ly~k~GF~~~G~l~n~~~i~G~~~d~~i~~k~l 266 (266)
T TIGR03827 219 ------TA-YTI-ARASSYGMNITFARLGYAYGGTLVNNTNISGGFESMNIWYKQL 266 (266)
T ss_pred ------EE-Eee-hhhcchhHHHHHHHcCCccccEEeecceecCCcccceeeeecC
Confidence 00 110 1122567788999999999888776666677 4445555543
No 27
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.70 E-value=0.00077 Score=80.88 Aligned_cols=68 Identities=25% Similarity=0.276 Sum_probs=56.8
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHh
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~k 129 (835)
...+..|.+||..++. . +..++|.|+.|.|||+++--.+..++..|+ +|+|||||..++..|.+-+..
T Consensus 156 ~~ln~~Q~~Av~~~l~---~---~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~-~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---S---KDLFLIHGPPGTGKTRTLVELIRQLVKRGL-RVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhc---C---CCeEEEEcCCCCCHHHHHHHHHHHHHHcCC-CEEEEcCcHHHHHHHHHHHHh
Confidence 4568899999976533 1 247889999999999999777788888887 899999999999999998765
No 28
>PRK13688 hypothetical protein; Provisional
Probab=97.68 E-value=7.3e-05 Score=74.51 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=23.9
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHH
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELL 440 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L 440 (835)
..++|.||+|+|+|||+|||+++++.+
T Consensus 78 ~~~~L~~l~V~p~~rgkGiG~~Ll~~a 104 (156)
T PRK13688 78 DYLELWKLEVLPKYQNRGYGEMLVDFA 104 (156)
T ss_pred CeEEEEEEEECHHHcCCCHHHHHHHHH
Confidence 347899999999999999999998754
No 29
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.68 E-value=0.00023 Score=87.21 Aligned_cols=134 Identities=23% Similarity=0.264 Sum_probs=95.1
Q ss_pred HHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceee
Q 003262 66 ITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIV 145 (835)
Q Consensus 66 ~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~ 145 (835)
..++++|.. +..++|.|+.|+||||.+=..+-.+-..+.+.|.||-|..=++..+-+.+...|+.- ..+.+.|.|.
T Consensus 56 ~~i~~ai~~---~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~-~G~~VGY~iR 131 (845)
T COG1643 56 DEILKAIEQ---NQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEK-LGETVGYSIR 131 (845)
T ss_pred HHHHHHHHh---CCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCC-cCceeeEEEE
Confidence 345565654 358999999999999999888776665555789999999999999999998877661 1133444432
Q ss_pred ecCCCCCCcceeEeeeeeccceeEEeeCCcccc-------ccCCCcEEEEecc------cCCCHHHHHHhhc--C--C-e
Q 003262 146 RSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE-------KLAQVELLVIDEA------AAIPLPVVRSLLG--P--Y-L 207 (835)
Q Consensus 146 ~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~-------~l~~adLLvIDEA------AAIPlpllk~Ll~--~--y-~ 207 (835)
- +-+...+-.|.|+...-+. .|...+++||||| +-|=+-+++.++. + - +
T Consensus 132 f-------------e~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 132 F-------------ESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred e-------------eccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 1 1112334567777765442 2678999999998 5677788888773 2 2 5
Q ss_pred EEEEeeccC
Q 003262 208 VFLSSTVNG 216 (835)
Q Consensus 208 vflsSTi~G 216 (835)
++||-|+++
T Consensus 199 IimSATld~ 207 (845)
T COG1643 199 IIMSATLDA 207 (845)
T ss_pred EEEecccCH
Confidence 789999885
No 30
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.66 E-value=0.00031 Score=86.35 Aligned_cols=134 Identities=19% Similarity=0.267 Sum_probs=85.7
Q ss_pred HHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccccccccccee
Q 003262 65 VITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDI 144 (835)
Q Consensus 65 l~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i 144 (835)
...++++|.+ +..++++|+.|.|||+++.+++-..... ..+|+||+|+.+.+..+.+.+.+-+..- ....+.|.+
T Consensus 7 ~~~i~~~l~~---~~~vIi~a~TGSGKTT~vpl~lL~~~~~-~~~ilvlqPrR~aA~qiA~rva~~~~~~-~g~~VGy~v 81 (819)
T TIGR01970 7 LPALRDALAA---HPQVVLEAPPGAGKSTAVPLALLDAPGI-GGKIIMLEPRRLAARSAAQRLASQLGEA-VGQTVGYRV 81 (819)
T ss_pred HHHHHHHHHc---CCcEEEECCCCCCHHHHHHHHHHHhhcc-CCeEEEEeCcHHHHHHHHHHHHHHhCCC-cCcEEEEEE
Confidence 3456666654 3578999999999999999987765532 3589999999999999999876544210 112223332
Q ss_pred eecCCCCCCcceeEeeeeeccceeEEeeCCcccc-------ccCCCcEEEEecccC--CC----HHHHHHhhc---C--C
Q 003262 145 VRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE-------KLAQVELLVIDEAAA--IP----LPVVRSLLG---P--Y 206 (835)
Q Consensus 145 ~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~-------~l~~adLLvIDEAAA--IP----lpllk~Ll~---~--y 206 (835)
-... ....+..|.|+.|.-+. .+...++||||||=- +- +.+++.+.. + .
T Consensus 82 r~~~-------------~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlq 148 (819)
T TIGR01970 82 RGEN-------------KVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLK 148 (819)
T ss_pred cccc-------------ccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCce
Confidence 1110 00122346666665432 256789999999984 33 334555442 2 2
Q ss_pred eEEEEeeccC
Q 003262 207 LVFLSSTVNG 216 (835)
Q Consensus 207 ~vflsSTi~G 216 (835)
+|+||.|+..
T Consensus 149 lIlmSATl~~ 158 (819)
T TIGR01970 149 ILAMSATLDG 158 (819)
T ss_pred EEEEeCCCCH
Confidence 6889999875
No 31
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.66 E-value=0.00096 Score=78.72 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhccc-CCChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCC
Q 003262 316 LFLQRMMALYVSSHY-KNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSG 394 (835)
Q Consensus 316 ~fLq~~~aLlV~AHY-kNsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~G 394 (835)
.=+..+..||...++ ..++..+......|+...||+... .+ .+++|++....... .
T Consensus 92 ~D~~~I~~L~~~~~~~p~~~~~~~~~~~~~~~~~~vA~~~---~~---g~IVG~~~~~~~~~---------------~-- 148 (547)
T TIGR03103 92 ADVDAINRLYAARGMVPVRVDFVLDHRHSRAITYLVAEDE---AS---GAIIGTVMGVDHRK---------------A-- 148 (547)
T ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHhcCCCceEEEEEEC---CC---CeEEEEEEEEeccc---------------c--
Confidence 346788888888765 345555554555677777777521 11 36888875421100 0
Q ss_pred CchhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 395 DQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 395 dLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
+.+.. .+..|.+|+|||+|||+|||+++|+.+.+++.
T Consensus 149 ----------~~d~~----~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~ 185 (547)
T TIGR03103 149 ----------FNDPE----HGSSLWCLAVDPQAAHPGVGEALVRALAEHFQ 185 (547)
T ss_pred ----------ccCCC----CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 11111 24578999999999999999999999998875
No 32
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=97.66 E-value=0.00026 Score=80.78 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=27.4
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
+.|.+|+|||+|||+|+|+++++.+.++..
T Consensus 348 ~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~ 377 (429)
T TIGR01890 348 GEMACLAVSPEYQDGGRGERLLAHIEDRAR 377 (429)
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 578899999999999999999999998764
No 33
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.58 E-value=0.00046 Score=84.83 Aligned_cols=134 Identities=19% Similarity=0.242 Sum_probs=83.1
Q ss_pred HHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccccccccccee
Q 003262 65 VITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDI 144 (835)
Q Consensus 65 l~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i 144 (835)
...+++++..+ ..++++|+.|.|||+++.+.+-.....+ .+|+||.|+.+.+..+.+.+...+..- ....+.|.+
T Consensus 10 ~~~i~~~l~~~---~~vvv~A~TGSGKTt~~pl~lL~~~~~~-~~ilvlqPrR~aA~qia~rva~~l~~~-~g~~VGy~v 84 (812)
T PRK11664 10 LPELLTALKTA---PQVLLKAPTGAGKSTWLPLQLLQHGGIN-GKIIMLEPRRLAARNVAQRLAEQLGEK-PGETVGYRM 84 (812)
T ss_pred HHHHHHHHHhC---CCEEEEcCCCCCHHHHHHHHHHHcCCcC-CeEEEECChHHHHHHHHHHHHHHhCcc-cCceEEEEe
Confidence 45567777553 4689999999999999988765433222 489999999999999998875443210 011122322
Q ss_pred eecCCCCCCcceeEeeeeeccceeEEeeCCcccc-------ccCCCcEEEEecccCCC------HHHHHHhhc---C--C
Q 003262 145 VRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE-------KLAQVELLVIDEAAAIP------LPVVRSLLG---P--Y 206 (835)
Q Consensus 145 ~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~-------~l~~adLLvIDEAAAIP------lpllk~Ll~---~--y 206 (835)
-.... ......|.|+.|.-+. .+...+++|||||=.-. +.+++.++. + .
T Consensus 85 r~~~~-------------~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lq 151 (812)
T PRK11664 85 RAESK-------------VGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLK 151 (812)
T ss_pred cCccc-------------cCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccce
Confidence 11000 0111235555554332 35678999999998643 345555543 2 2
Q ss_pred eEEEEeeccC
Q 003262 207 LVFLSSTVNG 216 (835)
Q Consensus 207 ~vflsSTi~G 216 (835)
+|+||.|+..
T Consensus 152 lilmSATl~~ 161 (812)
T PRK11664 152 LLIMSATLDN 161 (812)
T ss_pred EEEEecCCCH
Confidence 6889999864
No 34
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.58 E-value=0.00065 Score=90.20 Aligned_cols=159 Identities=14% Similarity=0.139 Sum_probs=101.7
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHH---HHH-HHHcCCCcEEEecCChHhHHHHHHHHHhh
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLA---IAG-AIAAGYSNIFVTAPSPENLKTLFEFVCKG 130 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGla---iA~-ai~~g~~nI~VTAPs~enl~tlFef~~kg 130 (835)
...|.+|..|+..++. . ..+.++|+|.-|.|||++|.=. +.. +-..|| +|+..||+-.+++.|-+ .|
T Consensus 1018 ~~Lt~~Q~~Ai~~il~---~--~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~-~v~glApT~~Aa~~L~~---~g 1088 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIS---T--KDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQL-QVIGLAPTHEAVGELKS---AG 1088 (1960)
T ss_pred CCCCHHHHHHHHHHHh---C--CCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCC-eEEEEeChHHHHHHHHh---cC
Confidence 3579999999876643 2 2358899999999999999422 222 223465 68889999999998854 34
Q ss_pred hccccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhhc----C-
Q 003262 131 FNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG----P- 205 (835)
Q Consensus 131 l~~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~----~- 205 (835)
+++-- +.| |.. ........+. +...+++|||||.++....+..|+. +
T Consensus 1089 ~~a~T---------i~s--------------~l~-~~~~~~~~~~----~~~~~v~ivDEasMv~~~~~~~l~~~~~~~~ 1140 (1960)
T TIGR02760 1089 VQAQT---------LDS--------------FLT-DISLYRNSGG----DFRNTLFILDESSMVSNFQLTHATELVQKSG 1140 (1960)
T ss_pred CchHh---------HHH--------------Hhc-CcccccccCC----CCcccEEEEEccccccHHHHHHHHHhccCCC
Confidence 43210 001 000 0000001111 3356899999999999999988873 2
Q ss_pred CeEEEEeeccCCcccCCchhHHHHHHhhhcCCCCCCCcCCCccCCceeEEEeccccccCCCCc
Q 003262 206 YLVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDP 268 (835)
Q Consensus 206 y~vflsSTi~GYEGTGR~fsLKl~~~L~~~~~~~~~~~~~~~~~r~~~ei~L~ePIRya~gDP 268 (835)
-.++|..-..=....|.|-.+++++.-. .+.-+.|++.+|-. +||
T Consensus 1141 ak~vlvGD~~QL~sV~aG~~f~~~~~~~-----------------~~~~~~L~~I~RQ~-~~~ 1185 (1960)
T TIGR02760 1141 SRAVSLGDIAQLQSLAAGKPFELAITFD-----------------IIDTAIMKEIVRQN-NSA 1185 (1960)
T ss_pred CEEEEeCChhhcCCCCCCcCHHHHHhcC-----------------CCCeEEeeeEecCC-CCH
Confidence 2566777766677777776666653311 14457899999976 444
No 35
>PRK10562 putative acetyltransferase; Provisional
Probab=97.56 E-value=0.00016 Score=69.33 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=49.7
Q ss_pred EEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccccc
Q 003262 418 IVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRER 497 (835)
Q Consensus 418 IVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~ 497 (835)
|.+++|||+|||+|||+.+++.+.+.+.
T Consensus 71 i~~~~v~~~~rg~G~g~~ll~~~~~~~~---------------------------------------------------- 98 (145)
T PRK10562 71 VGALFVAPKAVRRGIGKALMQHVQQRYP---------------------------------------------------- 98 (145)
T ss_pred EEEEEECHHHcCCCHHHHHHHHHHhhCC----------------------------------------------------
Confidence 6679999999999999999887654321
Q ss_pred CCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEE
Q 003262 498 QPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVL 545 (835)
Q Consensus 498 ~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMl 545 (835)
. -++.| +.-+....+||+|+||..+. ...++.+|+.+.+|=
T Consensus 99 ---~-~~~~v-~~~N~~s~~~y~k~Gf~~~~--~~~~~~~~~~~~~~~ 139 (145)
T PRK10562 99 ---H-LSLEV-YQKNQRAVNFYHAQGFRIVD--SAWQEETQHPTWIMS 139 (145)
T ss_pred ---e-EEEEE-EcCChHHHHHHHHCCCEEcc--ccccCCCCCEEEEEE
Confidence 0 01222 23378899999999999976 456666776666663
No 36
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.51 E-value=0.00097 Score=86.28 Aligned_cols=156 Identities=13% Similarity=0.119 Sum_probs=101.4
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH----cCCCcEEEecCChHhHHHHHHHHHhhh
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA----AGYSNIFVTAPSPENLKTLFEFVCKGF 131 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~----~g~~nI~VTAPs~enl~tlFef~~kgl 131 (835)
..|.+|..|+..++.. ..+.++|+|.-|.|||+++.-.+..+-. .|+ +|+.+||+-.+++.|-+ .|+
T Consensus 835 ~Lt~~Qr~Av~~iLts-----~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~-~V~glAPTgkAa~~L~e---~Gi 905 (1623)
T PRK14712 835 KLTSGQRAATRMILET-----SDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERP-RVVGLGPTHRAVGEMRS---AGV 905 (1623)
T ss_pred ccCHHHHHHHHHHHhC-----CCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCc-eEEEEechHHHHHHHHH---hCc
Confidence 6799999998877541 2468999999999999999876665432 243 68999999999999964 354
Q ss_pred ccccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhhc---C--C
Q 003262 132 NAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG---P--Y 206 (835)
Q Consensus 132 ~~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~---~--y 206 (835)
++.-..-.+. + ..+. ++ ..+ ......+++|||||.++....+..|+. . -
T Consensus 906 ~A~TIasfL~----------------~----~~~~---~~--~~~-~~~~~~~llIVDEASMV~~~~m~~ll~~~~~~ga 959 (1623)
T PRK14712 906 DAQTLASFLH----------------D----TQLQ---QR--SGE-TPDFSNTLFLLDESSMVGNTDMARAYALIAAGGG 959 (1623)
T ss_pred hHhhHHHHhc----------------c----ccch---hh--ccc-CCCCCCcEEEEEccccccHHHHHHHHHhhhhCCC
Confidence 4321110000 0 0000 00 000 001246899999999999988877763 2 2
Q ss_pred eEEEEeeccCCcccCCchhHHHHHHhhhcCCCCCCCcCCCccCCceeEEEecccccc
Q 003262 207 LVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRY 263 (835)
Q Consensus 207 ~vflsSTi~GYEGTGR~fsLKl~~~L~~~~~~~~~~~~~~~~~r~~~ei~L~ePIRy 263 (835)
.|+|..-..=....|-|=.++.++.- . .+.-++|++=+|-
T Consensus 960 rvVLVGD~~QL~sV~aG~~F~~lq~~---~--------------~~~ta~L~eI~RQ 999 (1623)
T PRK14712 960 RAVASGDTDQLQAIAPGQPFRLQQTR---S--------------AADVVIMKEIVRQ 999 (1623)
T ss_pred EEEEEcchhhcCCCCCCHHHHHHHHc---C--------------CCCeEEeCeeecC
Confidence 67777777777777777665555431 1 1345778888887
No 37
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.50 E-value=0.00035 Score=78.22 Aligned_cols=122 Identities=20% Similarity=0.269 Sum_probs=77.6
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccc
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 135 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lg 135 (835)
+.+.+|.+++..+++++.... ...+.|||+-|.|||.++=..+..+-..| ..+++|||+--+...+- .|
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~-~~~~fv~G~~GtGKs~l~~~i~~~~~~~~-~~~~~~a~tg~AA~~i~----~G----- 69 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEE-GLNFFVTGPAGTGKSFLIKAIIDYLRSRG-KKVLVTAPTGIAAFNIP----GG----- 69 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccC-CcEEEEEcCCCCChhHHHHHHHHHhcccc-ceEEEecchHHHHHhcc----CC-----
Confidence 367899999999999987643 45789999999999999976666554433 57999999987765440 11
Q ss_pred ccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHh
Q 003262 136 YKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSL 202 (835)
Q Consensus 136 y~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~L 202 (835)
-.-|--|.|.-..++. .. .+ +. ..+.....+..+++|||||+.++.-.++..+
T Consensus 70 ~T~hs~f~i~~~~~~~-~~--~~--~~---------~~~~~~~~l~~~~~lIiDEism~~~~~l~~i 122 (364)
T PF05970_consen 70 RTIHSFFGIPINNNEK-SQ--CK--IS---------KNSRLRERLRKADVLIIDEISMVSADMLDAI 122 (364)
T ss_pred cchHHhcCcccccccc-cc--cc--cc---------ccchhhhhhhhheeeecccccchhHHHHHHH
Confidence 1112222222111110 00 00 00 0111223467899999999999999887655
No 38
>PRK03624 putative acetyltransferase; Provisional
Probab=97.50 E-value=0.00022 Score=65.91 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=26.0
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 417 RIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 417 RIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.|..|+|||+|||+|||+.+++.+.+++.
T Consensus 70 ~i~~i~v~p~~rg~Gig~~ll~~~~~~~~ 98 (140)
T PRK03624 70 WAYYLAVHPDFRGRGIGRALVARLEKKLI 98 (140)
T ss_pred eEEEEEECHHHhCCCHHHHHHHHHHHHHH
Confidence 46678999999999999999999988764
No 39
>PHA02533 17 large terminase protein; Provisional
Probab=97.49 E-value=0.0018 Score=76.22 Aligned_cols=150 Identities=17% Similarity=0.112 Sum_probs=91.9
Q ss_pred ccccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHH-HHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhh
Q 003262 52 LIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALG-LAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKG 130 (835)
Q Consensus 52 Lv~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLG-laiA~ai~~g~~nI~VTAPs~enl~tlFef~~kg 130 (835)
.+..-...-|...+..+. . ++..++.-+|.-|||+++. +++..++..+..+|+++||+.+..+.+|+-+...
T Consensus 55 ~~Pf~L~p~Q~~i~~~~~----~---~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ 127 (534)
T PHA02533 55 TIKVQMRDYQKDMLKIMH----K---NRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQA 127 (534)
T ss_pred ceecCCcHHHHHHHHHHh----c---CeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 344556678887655441 1 3456799999999999997 4555566555569999999999999999887655
Q ss_pred hccccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccc-cccCCCcEEEEecccCCCHH--HHH---H-hh
Q 003262 131 FNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEH-EKLAQVELLVIDEAAAIPLP--VVR---S-LL 203 (835)
Q Consensus 131 l~~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~-~~l~~adLLvIDEAAAIPlp--llk---~-Ll 203 (835)
++.+. +.....++.. ++.. |.-..+.+|++.+-+.- ..=...++++|||+|.+|-+ ++. . |.
T Consensus 128 ie~~P--~l~~~~i~~~-----~~~~----I~l~NGS~I~~lss~~~t~rG~~~~~liiDE~a~~~~~~e~~~ai~p~la 196 (534)
T PHA02533 128 IELLP--DFLQPGIVEW-----NKGS----IELENGSKIGAYASSPDAVRGNSFAMIYIDECAFIPNFIDFWLAIQPVIS 196 (534)
T ss_pred HHhCH--HHhhcceeec-----CccE----EEeCCCCEEEEEeCCCCccCCCCCceEEEeccccCCCHHHHHHHHHHHHH
Confidence 54331 0011111111 1111 11234677887754321 12235789999999999972 222 2 22
Q ss_pred -cC-CeEEEEeeccCCcc
Q 003262 204 -GP-YLVFLSSTVNGYEG 219 (835)
Q Consensus 204 -~~-y~vflsSTi~GYEG 219 (835)
|. ..+++.||-+|..+
T Consensus 197 sg~~~r~iiiSTp~G~n~ 214 (534)
T PHA02533 197 SGRSSKIIITSTPNGLNH 214 (534)
T ss_pred cCCCceEEEEECCCchhh
Confidence 22 34666777788854
No 40
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.46 E-value=0.00036 Score=63.23 Aligned_cols=124 Identities=23% Similarity=0.252 Sum_probs=73.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCcceeE
Q 003262 80 TVALLAARGRGKSAALGLAIAGAIAA-GYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVR 158 (835)
Q Consensus 80 ~v~LTA~RGRGKSAaLGlaiA~ai~~-g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aivr 158 (835)
.++|+++.|.|||..+=..+..+... +..+|+|++|+..-++.+.+.+.+-+.. ...+.+...........
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--- 73 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE-----GIKVGYLIGGTSIKQQE--- 73 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC-----CcEEEEEecCcchhHHH---
Confidence 36899999999998776555555544 5678999999999999998887765532 11222222211100000
Q ss_pred eeeeeccceeEEeeCCcccc--------ccCCCcEEEEecccCCCHHHHHHh-----h----cCCeEEEEee
Q 003262 159 INIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIPLPVVRSL-----L----GPYLVFLSST 213 (835)
Q Consensus 159 vni~~~hrq~Iqyi~P~d~~--------~l~~adLLvIDEAAAIPlpllk~L-----l----~~y~vflsST 213 (835)
.. ......|.+..++.+. .....+++|||||=.+.-+..... . +..+++||.|
T Consensus 74 -~~-~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saT 143 (144)
T cd00046 74 -KL-LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSAT 143 (144)
T ss_pred -HH-hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEecc
Confidence 00 0112234444444331 123689999999998877654332 1 2346777877
No 41
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=97.45 E-value=0.00032 Score=67.84 Aligned_cols=68 Identities=24% Similarity=0.297 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCcEEEecCChHhHHHHHHHHHhhhc
Q 003262 58 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-YSNIFVTAPSPENLKTLFEFVCKGFN 132 (835)
Q Consensus 58 T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g-~~nI~VTAPs~enl~tlFef~~kgl~ 132 (835)
|.-|.+++..+. . ...++|.|+.|.|||.+.=+++-..+..+ ...++|..|+.+-+...++-+.+-+.
T Consensus 1 t~~Q~~~~~~i~----~---~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~ 69 (169)
T PF00270_consen 1 TPLQQEAIEAII----S---GKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFS 69 (169)
T ss_dssp -HHHHHHHHHHH----T---TSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHH----c---CCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccc
Confidence 678999887664 2 23589999999999999888777777666 34899999999999999977755443
No 42
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.44 E-value=0.0012 Score=86.25 Aligned_cols=158 Identities=12% Similarity=0.112 Sum_probs=104.0
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc----CCCcEEEecCChHhHHHHHHHHHhh
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA----GYSNIFVTAPSPENLKTLFEFVCKG 130 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~----g~~nI~VTAPs~enl~tlFef~~kg 130 (835)
...|.+|..|+..++. ...+.++|+|..|.|||++|...+..+-.. |+ .|+.+||+-.+++.|-+ .|
T Consensus 966 ~~Lt~~Q~~Av~~il~-----s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~-~V~glAPTgrAAk~L~e---~G 1036 (1747)
T PRK13709 966 EGLTSGQRAATRMILE-----STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERP-RVVGLGPTHRAVGEMRS---AG 1036 (1747)
T ss_pred CCCCHHHHHHHHHHHh-----CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCc-eEEEECCcHHHHHHHHh---cC
Confidence 4579999999987764 123589999999999999998776664322 33 68999999999998865 34
Q ss_pred hccccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhhc-----C
Q 003262 131 FNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG-----P 205 (835)
Q Consensus 131 l~~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~-----~ 205 (835)
+++.-....+ .+ .. .+....+. .....+|+|||||.++...++..|+. .
T Consensus 1037 i~A~TI~s~L----------------~~------~~---~~~~~~~~-~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~~g 1090 (1747)
T PRK13709 1037 VDAQTLASFL----------------HD------TQ---LQQRSGET-PDFSNTLFLLDESSMVGNTDMARAYALIAAGG 1090 (1747)
T ss_pred cchhhHHHHh----------------cc------cc---cccccccC-CCCCCcEEEEEccccccHHHHHHHHHhhhcCC
Confidence 4332110000 00 00 01111010 11246999999999999999998873 1
Q ss_pred CeEEEEeeccCCcccCCchhHHHHHHhhhcCCCCCCCcCCCccCCceeEEEeccccccC
Q 003262 206 YLVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYA 264 (835)
Q Consensus 206 y~vflsSTi~GYEGTGR~fsLKl~~~L~~~~~~~~~~~~~~~~~r~~~ei~L~ePIRya 264 (835)
-.|+|..-.+=....|.|-.++.++. .. .+..+.|++=+|-.
T Consensus 1091 arvVLVGD~~QL~sV~aG~~f~~l~~---~~--------------~i~~~~L~eI~RQ~ 1132 (1747)
T PRK13709 1091 GRAVSSGDTDQLQAIAPGQPFRLMQT---RS--------------AADVAIMKEIVRQT 1132 (1747)
T ss_pred CEEEEecchHhcCCCCCChHHHHHHH---hC--------------CCCeEEeCeEEcCc
Confidence 36777888777777777765554433 11 13457899988877
No 43
>PRK10514 putative acetyltransferase; Provisional
Probab=97.40 E-value=0.00029 Score=66.80 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.1
Q ss_pred EEEEeeCcccccCChHHHHHHHHHHH
Q 003262 418 IVRIATHPSAMRLGYGSTAVELLTRY 443 (835)
Q Consensus 418 IVRIAvhPd~q~mGyGsraL~~L~~~ 443 (835)
|-.|+|||+|||+|||+++++.+.+.
T Consensus 72 ~~~~~v~p~~rgkGig~~Ll~~~~~~ 97 (145)
T PRK10514 72 MEALFVDPDVRGCGVGRMLVEHALSL 97 (145)
T ss_pred EeEEEECHHhccCCHHHHHHHHHHHh
Confidence 44799999999999999998877653
No 44
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=97.39 E-value=0.00018 Score=66.67 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=28.7
Q ss_pred CcccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 413 LSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 413 lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
...+-|.-+||||+|||+|+|+++++.+.+++.
T Consensus 70 ~~~~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~ 102 (127)
T PF13527_consen 70 FKAAYIGDVAVDPEYRGRGLGRQLMRALLERAR 102 (127)
T ss_dssp EEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999999999988765
No 45
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.38 E-value=0.00076 Score=74.18 Aligned_cols=57 Identities=25% Similarity=0.261 Sum_probs=41.2
Q ss_pred HHHHHHHH---HHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 60 DQGKAVIT---FLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 60 DQakAl~~---~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
++.+++.. |++....+.....+.|+|+.|+|||.+++-.+-.++..|++-+||+.|+
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~ 194 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE 194 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHH
Confidence 45554443 4443333223457999999999999999977777778899989999983
No 46
>PRK05279 N-acetylglutamate synthase; Validated
Probab=97.38 E-value=0.00027 Score=80.86 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=27.1
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
+.|.+|+|||+|||+|+|+++++.+.++..
T Consensus 360 ~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~ 389 (441)
T PRK05279 360 GEMACLAVHPDYRGSGRGERLLKRIEQRAR 389 (441)
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 568899999999999999999999988764
No 47
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=97.35 E-value=0.00042 Score=70.07 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=27.5
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
+.|..|+|+|+|||+|||+++++.+.+|..
T Consensus 124 ~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~ 153 (191)
T TIGR02382 124 ARIGLLAVFPGAQSRGIGAELMQTALNWCY 153 (191)
T ss_pred eEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 468889999999999999999999999874
No 48
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.35 E-value=0.00078 Score=65.48 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=50.9
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFV 127 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~ 127 (835)
....|.+|+..+++.+......+.++|.|+.|.|||-....+++.+.. ++++.+|+..=+..+.+-+
T Consensus 4 lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 4 LRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp E-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHH
Confidence 356899999999998876522457899999999999988755555543 9999999987776665444
No 49
>PHA00673 acetyltransferase domain containing protein
Probab=97.34 E-value=0.0029 Score=63.42 Aligned_cols=94 Identities=10% Similarity=0.004 Sum_probs=67.7
Q ss_pred CcHHHHHHHHHHHHhcccCCChhH----------HHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHH
Q 003262 313 ESELFLQRMMALYVSSHYKNSPND----------LQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSV 382 (835)
Q Consensus 313 ~sE~fLq~~~aLlV~AHYkNsPnD----------LqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~ 382 (835)
+.+.=+-.+++||....+-..+.| +..|...|++++||..- + ++++|.+|+...-.++
T Consensus 12 A~~~D~paI~~LLadd~l~~~r~d~~~~~~y~~af~ai~~dp~~~llVa~~-----~---g~vVG~~~l~~~p~l~---- 79 (154)
T PHA00673 12 AELADAPTFASLCAEYAHESANADLAGRAPDHHAYAGMEAAGVAHFLGVFR-----G---EELVGFACLLVTPVPH---- 79 (154)
T ss_pred ccHhhHHHHHHHHHhcccccccccccccchhHHHHHHHHhCCCcEEEEEEE-----C---CEEEEEEEEEEecCCc----
Confidence 345556677788766443333222 57788899999999962 2 3799999988653222
Q ss_pred HHHHhcCCCCCCCchhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 383 LKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 383 ~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
+.....+.|-.+-|+|++||+|+|+++++..+++..
T Consensus 80 ---------------------------~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar 115 (154)
T PHA00673 80 ---------------------------FKGQLIGTTESIFVAAAHRPGGAGMALLRATEALAR 115 (154)
T ss_pred ---------------------------cCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHH
Confidence 223345689999999999999999999999888765
No 50
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=97.33 E-value=0.00087 Score=64.22 Aligned_cols=69 Identities=13% Similarity=0.088 Sum_probs=50.6
Q ss_pred EEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccCC
Q 003262 420 RIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQP 499 (835)
Q Consensus 420 RIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~~ 499 (835)
.|+|+|+|||+|||+.+++.+.+++....
T Consensus 83 ~~~v~p~~rg~Gig~~ll~~l~~~~~~~~--------------------------------------------------- 111 (162)
T PRK10140 83 GICVDSRWKNRGVASALMREMIEMCDNWL--------------------------------------------------- 111 (162)
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHhhC---------------------------------------------------
Confidence 58999999999999999999988763110
Q ss_pred CCcc-eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCc
Q 003262 500 EKLN-YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEH 540 (835)
Q Consensus 500 ~~lD-ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEh 540 (835)
+++ .....+.-+....+||+|+||+.+.....+....|.+
T Consensus 112 -~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~~~~~~~~~~~ 152 (162)
T PRK10140 112 -RVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEY 152 (162)
T ss_pred -CccEEEEEEEcCCHHHHHHHHHCCCEEEeecccceeeCCeE
Confidence 001 1112345578999999999999998877665555544
No 51
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.33 E-value=0.0014 Score=83.48 Aligned_cols=133 Identities=19% Similarity=0.262 Sum_probs=84.2
Q ss_pred HHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCcEEEecCChHhHHHHHHHHHhhhcccccccccccee
Q 003262 66 ITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-YSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDI 144 (835)
Q Consensus 66 ~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g-~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i 144 (835)
..++++|.+ +..++|+|+.|.||||.+-..+... ..| ..+|+||-|..-++.++.+.+.+.++.- ..+.+.|.+
T Consensus 73 ~~Il~~l~~---~~vvii~g~TGSGKTTqlPq~lle~-~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~-lG~~VGY~v 147 (1283)
T TIGR01967 73 EDIAEAIAE---NQVVIIAGETGSGKTTQLPKICLEL-GRGSHGLIGHTQPRRLAARTVAQRIAEELGTP-LGEKVGYKV 147 (1283)
T ss_pred HHHHHHHHh---CceEEEeCCCCCCcHHHHHHHHHHc-CCCCCceEecCCccHHHHHHHHHHHHHHhCCC-cceEEeeEE
Confidence 556777755 3589999999999999886554321 122 2479999999999999999998766431 112223322
Q ss_pred eecCCCCCCcceeEeeeeeccceeEEeeCCcccc-------ccCCCcEEEEeccc--CCCHH----HHHHhhc--CC--e
Q 003262 145 VRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE-------KLAQVELLVIDEAA--AIPLP----VVRSLLG--PY--L 207 (835)
Q Consensus 145 ~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~-------~l~~adLLvIDEAA--AIPlp----llk~Ll~--~y--~ 207 (835)
-... . ......|.|+.|.-+. .+...+.+|||||= .+-.. ++++++. +- +
T Consensus 148 R~~~------~-------~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKl 214 (1283)
T TIGR01967 148 RFHD------Q-------VSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKI 214 (1283)
T ss_pred cCCc------c-------cCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeE
Confidence 1110 0 0112346666655432 25678999999998 44443 4566653 22 6
Q ss_pred EEEEeeccC
Q 003262 208 VFLSSTVNG 216 (835)
Q Consensus 208 vflsSTi~G 216 (835)
|+||.|++.
T Consensus 215 IlmSATld~ 223 (1283)
T TIGR01967 215 IITSATIDP 223 (1283)
T ss_pred EEEeCCcCH
Confidence 889999963
No 52
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=97.31 E-value=0.0004 Score=66.50 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=26.9
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..|..|+|+|+|||+|||+.+++.+.++..
T Consensus 86 ~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~ 115 (150)
T PLN02706 86 GHIEDVVVDSAARGKGLGKKIIEALTEHAR 115 (150)
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 457789999999999999999999998864
No 53
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=97.30 E-value=0.0019 Score=77.41 Aligned_cols=146 Identities=23% Similarity=0.297 Sum_probs=91.8
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccc
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 135 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lg 135 (835)
..|..|.+|+..+........ ....+|.|+.|.|||.+--+++..++..|+ .++|.+|+.+=+...++.+.+-|..+|
T Consensus 235 ~lt~~Q~~ai~~I~~~~~~~~-~~~~Ll~g~TGSGKT~va~l~il~~~~~g~-qvlilaPT~~LA~Q~~~~~~~l~~~~g 312 (630)
T TIGR00643 235 KLTRAQKRVVKEILQDLKSDV-PMNRLLQGDVGSGKTLVAALAMLAAIEAGY-QVALMAPTEILAEQHYNSLRNLLAPLG 312 (630)
T ss_pred CCCHHHHHHHHHHHHHhccCC-CccEEEECCCCCcHHHHHHHHHHHHHHcCC-cEEEECCHHHHHHHHHHHHHHHhcccC
Confidence 579999999998877554321 224699999999999988888888887776 699999999999988887776665544
Q ss_pred ccccccceeeecCCCCCC-c----ce----eEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhh---
Q 003262 136 YKEHIDYDIVRSSNPDLR-K----PI----VRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLL--- 203 (835)
Q Consensus 136 y~e~~dy~i~~st~p~~~-~----ai----vrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll--- 203 (835)
.+- .++.+..+.-. + .+ ..|- .-+|. .++ +...+...+++|||||=.++...-..+.
T Consensus 313 i~v----~lltg~~~~~~r~~~~~~i~~g~~~Ii-VgT~~-ll~-----~~~~~~~l~lvVIDEaH~fg~~qr~~l~~~~ 381 (630)
T TIGR00643 313 IEV----ALLTGSLKGKRRKELLETIASGQIHLV-VGTHA-LIQ-----EKVEFKRLALVIIDEQHRFGVEQRKKLREKG 381 (630)
T ss_pred cEE----EEEecCCCHHHHHHHHHHHhCCCCCEE-EecHH-HHh-----ccccccccceEEEechhhccHHHHHHHHHhc
Confidence 321 11111111000 0 00 0111 11221 111 1122456789999999888776544443
Q ss_pred ----cCCeEEEEeec
Q 003262 204 ----GPYLVFLSSTV 214 (835)
Q Consensus 204 ----~~y~vflsSTi 214 (835)
.+.+++||.|.
T Consensus 382 ~~~~~~~~l~~SATp 396 (630)
T TIGR00643 382 QGGFTPHVLVMSATP 396 (630)
T ss_pred ccCCCCCEEEEeCCC
Confidence 24577889984
No 54
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=97.30 E-value=0.0028 Score=76.62 Aligned_cols=148 Identities=22% Similarity=0.271 Sum_probs=94.8
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
-..|..|.+|+..+..-+.... ..-++|.|+.|.|||.+--+++..++..|+ .++|-||+.+-+...++.+.+-+..+
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~-~~~~Ll~~~TGSGKT~va~~~il~~~~~g~-q~lilaPT~~LA~Q~~~~l~~l~~~~ 337 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPK-PMNRLLQGDVGSGKTVVAALAALAAIEAGY-QAALMAPTEILAEQHYENLKKLLEPL 337 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccC-CceEEEECCCCCcHHHHHHHHHHHHHHcCC-eEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 3589999999998877665433 235789999999999998888887887776 68888999999999988877666554
Q ss_pred cccccccceeeecCCCC-CCc----cee--Eeeee-eccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhh---
Q 003262 135 EYKEHIDYDIVRSSNPD-LRK----PIV--RINIY-RQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLL--- 203 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~-~~~----aiv--rvni~-~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll--- 203 (835)
|.+- .++.+..+. -.+ .+. .++|. -+| ..++ +...+...+++|||||=-+....-..+.
T Consensus 338 ~i~v----~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~-~ll~-----~~v~~~~l~lvVIDE~Hrfg~~qr~~l~~~~ 407 (681)
T PRK10917 338 GIRV----ALLTGSLKGKERREILEAIASGEADIVIGTH-ALIQ-----DDVEFHNLGLVIIDEQHRFGVEQRLALREKG 407 (681)
T ss_pred CcEE----EEEcCCCCHHHHHHHHHHHhCCCCCEEEchH-HHhc-----ccchhcccceEEEechhhhhHHHHHHHHhcC
Confidence 4321 111111110 000 000 01111 122 1111 1112457899999999888777666655
Q ss_pred -cCCeEEEEeec
Q 003262 204 -GPYLVFLSSTV 214 (835)
Q Consensus 204 -~~y~vflsSTi 214 (835)
.+.+++||.|-
T Consensus 408 ~~~~iL~~SATp 419 (681)
T PRK10917 408 ENPHVLVMTATP 419 (681)
T ss_pred CCCCEEEEeCCC
Confidence 25577788884
No 55
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=97.23 E-value=0.00041 Score=76.02 Aligned_cols=29 Identities=17% Similarity=0.044 Sum_probs=26.7
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 417 RIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 417 RIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.|-+|||||+|||+|+|+++|+.+++++.
T Consensus 27 ~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~ 55 (297)
T cd02169 27 VLKCVAVCPKYQGEGLALKIVSELINKAY 55 (297)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 48899999999999999999999998774
No 56
>PRK07757 acetyltransferase; Provisional
Probab=97.23 E-value=0.00052 Score=65.87 Aligned_cols=30 Identities=23% Similarity=0.141 Sum_probs=26.9
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
+.|-.|+|+|+|||+|||+++++.+.++..
T Consensus 66 ~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~ 95 (152)
T PRK07757 66 AEIRSLAVSEDYRGQGIGRMLVEACLEEAR 95 (152)
T ss_pred eEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 467799999999999999999999998764
No 57
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=97.22 E-value=0.00083 Score=66.11 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=28.2
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.+.|.+|||+|+|||+|||+.+++.+.+++.
T Consensus 66 ~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~ 96 (157)
T TIGR02406 66 VLFVWQVAVDPRARGKGLARRLLEALLERVA 96 (157)
T ss_pred eEEEEEEEEChHhccCcHHHHHHHHHHHHHH
Confidence 3778999999999999999999999998764
No 58
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.20 E-value=0.0019 Score=77.90 Aligned_cols=149 Identities=19% Similarity=0.232 Sum_probs=81.6
Q ss_pred ccccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHH------------HHHHHHHHH-c-CCCcEEEecCCh
Q 003262 52 LIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAAL------------GLAIAGAIA-A-GYSNIFVTAPSP 117 (835)
Q Consensus 52 Lv~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaL------------GlaiA~ai~-~-g~~nI~VTAPs~ 117 (835)
+-+.-.|.-|.++=..++..+.++ +.++++|+.|.|||+++ |+.....+. . ...+|+||+|+.
T Consensus 156 ~~~~~l~~~~~~iQ~qil~~i~~g---kdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~Prr 232 (675)
T PHA02653 156 FSKIPLASLQPDVQLKIFEAWISR---KPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRV 232 (675)
T ss_pred cccccCCchhHHHHHHHHHHHHhC---CCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHH
Confidence 334445556666666666766553 57899999999999985 333222222 1 235799999999
Q ss_pred HhHHHHHHHHHhhhccccccccc--cceeeecCCCCC--Ccc--eeEeeeeeccceeEEeeCCccccccCCCcEEEEecc
Q 003262 118 ENLKTLFEFVCKGFNAIEYKEHI--DYDIVRSSNPDL--RKP--IVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEA 191 (835)
Q Consensus 118 enl~tlFef~~kgl~~lgy~e~~--dy~i~~st~p~~--~~a--ivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEA 191 (835)
+.+..+.+-+.+ .+||.... .+.+.....++- +.. -..+ ++++|+.. ...+...++||||||
T Consensus 233 eLa~qi~~~i~~---~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~I-lv~T~~L~--------l~~L~~v~~VVIDEa 300 (675)
T PHA02653 233 ALVRLHSITLLK---SLGFDEIDGSPISLKYGSIPDELINTNPKPYGL-VFSTHKLT--------LNKLFDYGTVIIDEV 300 (675)
T ss_pred HHHHHHHHHHHH---HhCccccCCceEEEEECCcchHHhhcccCCCCE-EEEeCccc--------ccccccCCEEEcccc
Confidence 988887766543 23553211 112211111100 000 0011 12233211 123567899999999
Q ss_pred cCCCH------HHHHHhhc--CCeEEEEeecc
Q 003262 192 AAIPL------PVVRSLLG--PYLVFLSSTVN 215 (835)
Q Consensus 192 AAIPl------pllk~Ll~--~y~vflsSTi~ 215 (835)
=..+. .+++.++. +.+++||.|..
T Consensus 301 HEr~~~~DllL~llk~~~~~~rq~ILmSATl~ 332 (675)
T PHA02653 301 HEHDQIGDIIIAVARKHIDKIRSLFLMTATLE 332 (675)
T ss_pred ccCccchhHHHHHHHHhhhhcCEEEEEccCCc
Confidence 65443 33444432 24788999963
No 59
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=97.14 E-value=0.0025 Score=71.65 Aligned_cols=115 Identities=14% Similarity=0.248 Sum_probs=79.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCChHh-HHHHHHHHHhhhccccccccccceeeecCCCCCCcc
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSPEN-LKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKP 155 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAPs~en-l~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~a 155 (835)
+..++.|+||.|||.+..+.+...+.. ...|++|+.|+... -.++|.-+...++.+|+.. .|. .+.+| .
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~--~~~--~~~~~----~ 73 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINY--EFK--KSKSS----M 73 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChh--hee--ecCCc----c
Confidence 357899999999999998887765544 56899999999984 4567777777777777542 122 12222 0
Q ss_pred eeEeeeeeccceeEEeeCC-ccccccC---CCcEEEEecccCCCHHHHHHhhc
Q 003262 156 IVRINIYRQHRQTIQYMEP-HEHEKLA---QVELLVIDEAAAIPLPVVRSLLG 204 (835)
Q Consensus 156 ivrvni~~~hrq~Iqyi~P-~d~~~l~---~adLLvIDEAAAIPlpllk~Ll~ 204 (835)
.+. +..-+++|.|..- ++..++. ..+++.||||+-+|-..+++++.
T Consensus 74 --~i~-~~~~g~~i~f~g~~d~~~~ik~~~~~~~~~idEa~~~~~~~~~~l~~ 123 (396)
T TIGR01547 74 --EIK-ILNTGKKFIFKGLNDKPNKLKSGAGIAIIWFEEASQLTFEDIKELIP 123 (396)
T ss_pred --EEE-ecCCCeEEEeecccCChhHhhCcceeeeehhhhhhhcCHHHHHHHHH
Confidence 111 1222677888666 5444432 25899999999999998888873
No 60
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=97.14 E-value=0.0015 Score=66.01 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=27.0
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
+.|..++|+|+|||+|||+.+++.+.++..
T Consensus 127 ~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~ 156 (194)
T PRK10975 127 ARIGLLAVFPGAQGRGIGARLMQAALNWCQ 156 (194)
T ss_pred eEEEEEEEChhhcCCCHHHHHHHHHHHHHH
Confidence 567889999999999999999999998873
No 61
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=97.13 E-value=0.0024 Score=81.39 Aligned_cols=131 Identities=21% Similarity=0.286 Sum_probs=83.4
Q ss_pred HHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCcEEEecCChHhHHHHHHHHHhhhcc-ccccccccce
Q 003262 66 ITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-YSNIFVTAPSPENLKTLFEFVCKGFNA-IEYKEHIDYD 143 (835)
Q Consensus 66 ~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g-~~nI~VTAPs~enl~tlFef~~kgl~~-lgy~e~~dy~ 143 (835)
..++++|.+ +..++|+|..|.||||.|-..+-.+ ..| ..+|.+|-|..-+..+|-+.+...++. +| +.+.|.
T Consensus 80 ~~Il~ai~~---~~VviI~GeTGSGKTTqlPq~lle~-g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG--~~VGY~ 153 (1294)
T PRK11131 80 QDILEAIRD---HQVVIVAGETGSGKTTQLPKICLEL-GRGVKGLIGHTQPRRLAARTVANRIAEELETELG--GCVGYK 153 (1294)
T ss_pred HHHHHHHHh---CCeEEEECCCCCCHHHHHHHHHHHc-CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhc--ceecee
Confidence 356666655 3588999999999999765332211 123 237999999999999999998877764 32 223343
Q ss_pred eeecCCCCCCcceeEeeeeeccceeEEeeCCcccc-------ccCCCcEEEEecccC--CCH----HHHHHhhc--C--C
Q 003262 144 IVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE-------KLAQVELLVIDEAAA--IPL----PVVRSLLG--P--Y 206 (835)
Q Consensus 144 i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~-------~l~~adLLvIDEAAA--IPl----pllk~Ll~--~--y 206 (835)
+-.. +. ...+..|.|+.|.-+. .+...+.+|||||=. +.. .++++++. | -
T Consensus 154 vrf~------~~-------~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlK 220 (1294)
T PRK11131 154 VRFN------DQ-------VSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLK 220 (1294)
T ss_pred ecCc------cc-------cCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCce
Confidence 2111 00 0122346666654332 257899999999985 433 34666663 2 2
Q ss_pred eEEEEeecc
Q 003262 207 LVFLSSTVN 215 (835)
Q Consensus 207 ~vflsSTi~ 215 (835)
+|+||.|++
T Consensus 221 vILmSATid 229 (1294)
T PRK11131 221 VIITSATID 229 (1294)
T ss_pred EEEeeCCCC
Confidence 688999996
No 62
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.10 E-value=0.0068 Score=66.68 Aligned_cols=31 Identities=13% Similarity=0.006 Sum_probs=28.2
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.+.|..|+|+|+|||+|+|+.+|+.+.++..
T Consensus 257 ~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~ 287 (320)
T TIGR01686 257 NLFIDDLCMSCRALGRGVETRMLRWLFEQAL 287 (320)
T ss_pred cEEEEEEEEcHhHhcCcHHHHHHHHHHHHHH
Confidence 3589999999999999999999999998764
No 63
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=97.09 E-value=0.0015 Score=58.77 Aligned_cols=28 Identities=36% Similarity=0.400 Sum_probs=24.1
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHH
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRY 443 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~ 443 (835)
..|..+.|+|+|||+|||+.++..|.+-
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~ 49 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARE 49 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHH
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHH
Confidence 5889999999999999999999887654
No 64
>PRK09831 putative acyltransferase; Provisional
Probab=97.08 E-value=0.00073 Score=65.08 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=23.7
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHHH
Q 003262 417 RIVRIATHPSAMRLGYGSTAVELLTRY 443 (835)
Q Consensus 417 RIVRIAvhPd~q~mGyGsraL~~L~~~ 443 (835)
.|..|.|+|+|||+|||+++|+.+.+.
T Consensus 74 ~i~~~~v~p~~~g~GiG~~Ll~~~~~~ 100 (147)
T PRK09831 74 YIDMLFVDPEYTRRGVASALLKPLIKS 100 (147)
T ss_pred eeeeEEECHHHcCCCHHHHHHHHHHHH
Confidence 356799999999999999999988764
No 65
>PRK07922 N-acetylglutamate synthase; Validated
Probab=97.04 E-value=0.0011 Score=66.41 Aligned_cols=30 Identities=33% Similarity=0.365 Sum_probs=26.9
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
+.|-.|+|||+|||+|+|+.+++.+.+++.
T Consensus 71 ~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~ 100 (169)
T PRK07922 71 AEIRTVAVDPAARGRGVGHAIVERLLDVAR 100 (169)
T ss_pred eEEEEEEECHHHhCCCHHHHHHHHHHHHHH
Confidence 457789999999999999999999998764
No 66
>PLN02825 amino-acid N-acetyltransferase
Probab=97.04 E-value=0.0011 Score=77.78 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=55.3
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccc
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHL 494 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l 494 (835)
.+.|-.|||||+|||+|+|+++|+.++++...+.
T Consensus 432 ~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G---------------------------------------------- 465 (515)
T PLN02825 432 CGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLG---------------------------------------------- 465 (515)
T ss_pred cEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCC----------------------------------------------
Confidence 3678899999999999999999999988764211
Q ss_pred cccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEe------eecccCCCCCceEEEEccC
Q 003262 495 RERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYV------SQNANAVTGEHTCMVLKPL 548 (835)
Q Consensus 495 ~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVyl------rq~~ne~TGEhS~IMlr~L 548 (835)
+..+=+ +|....+||++.||.++-+ ||..+. .+..|-|.+|.|
T Consensus 466 -------~~~L~L---ltt~a~~fY~k~GF~~~~~~~lp~~~~~~yn-~~r~sk~~~k~l 514 (515)
T PLN02825 466 -------LEKLFL---LTTRTADWFVRRGFSECSIESLPEARRKRIN-LSRGSKYYMKKL 514 (515)
T ss_pred -------CCEEEE---EeCcHHHHHHHCCCEEeChhhCCHHHHhhcC-ccCCcEEEEEec
Confidence 111111 2345689999999998877 233332 567888888876
No 67
>PHA02558 uvsW UvsW helicase; Provisional
Probab=97.03 E-value=0.0057 Score=71.35 Aligned_cols=142 Identities=14% Similarity=0.099 Sum_probs=81.2
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
...+..|.+|+..+++ +...++.|+.|-|||.+.-..+...++.+..+++|-+|+.+=+....+-+.+ +
T Consensus 113 ~~~r~~Q~~av~~~l~-------~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~----~ 181 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK-------NNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVD----Y 181 (501)
T ss_pred CCCCHHHHHHHHHHHh-------cCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHH----h
Confidence 4577899999876653 1236899999999998643322233455555999999999887777655432 1
Q ss_pred cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhhc-----CCeEE
Q 003262 135 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG-----PYLVF 209 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~-----~y~vf 209 (835)
+......+..+.+..+..... .|.|. -.|++.. .|. ..+...+++|||||=.++-+-+..++. +|++.
T Consensus 182 ~~~~~~~~~~i~~g~~~~~~~--~I~Va--T~qsl~~-~~~--~~~~~~~~iIvDEaH~~~~~~~~~il~~~~~~~~~lG 254 (501)
T PHA02558 182 RLFPREAMHKIYSGTAKDTDA--PIVVS--TWQSAVK-QPK--EWFDQFGMVIVDECHLFTGKSLTSIITKLDNCKFKFG 254 (501)
T ss_pred ccccccceeEEecCcccCCCC--CEEEe--eHHHHhh-chh--hhccccCEEEEEchhcccchhHHHHHHhhhccceEEE
Confidence 111111111122221111111 11111 1112111 111 123578999999999888777766652 46788
Q ss_pred EEeec
Q 003262 210 LSSTV 214 (835)
Q Consensus 210 lsSTi 214 (835)
||.|.
T Consensus 255 LTATp 259 (501)
T PHA02558 255 LTGSL 259 (501)
T ss_pred EeccC
Confidence 99997
No 68
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=96.94 E-value=0.0045 Score=73.41 Aligned_cols=133 Identities=22% Similarity=0.295 Sum_probs=90.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCccee
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIV 157 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aiv 157 (835)
..+++|.|..|.||||-+=--++.+-......|.||-|..-++.+|-.-+...++. .+.+.+.|.|--.
T Consensus 66 nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~-~lG~~VGY~IRFe---------- 134 (674)
T KOG0922|consen 66 NQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGC-QLGEEVGYTIRFE---------- 134 (674)
T ss_pred CCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCC-CcCceeeeEEEec----------
Confidence 46999999999999999866555442222234999999999999999888655544 2334455654321
Q ss_pred EeeeeeccceeEEeeCCcccc-------ccCCCcEEEEecccC------CCHHHHHHhhcCC----eEEEEeeccCCccc
Q 003262 158 RINIYRQHRQTIQYMEPHEHE-------KLAQVELLVIDEAAA------IPLPVVRSLLGPY----LVFLSSTVNGYEGT 220 (835)
Q Consensus 158 rvni~~~hrq~Iqyi~P~d~~-------~l~~adLLvIDEAAA------IPlpllk~Ll~~y----~vflsSTi~GYEGT 220 (835)
=...+.-+|.|+.-.-+. .|.+.+++|||||-= |=+-+||+++... +++||.|++
T Consensus 135 ---d~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATld----- 206 (674)
T KOG0922|consen 135 ---DSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLD----- 206 (674)
T ss_pred ---ccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeeec-----
Confidence 112345678888765442 267899999999964 4456677777422 688999998
Q ss_pred CCchhHHHHHHhh
Q 003262 221 GRSLSLKLLHQLE 233 (835)
Q Consensus 221 GR~fsLKl~~~L~ 233 (835)
+=||-+...
T Consensus 207 ----a~kfS~yF~ 215 (674)
T KOG0922|consen 207 ----AEKFSEYFN 215 (674)
T ss_pred ----HHHHHHHhc
Confidence 445555554
No 69
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=96.92 E-value=0.0044 Score=74.17 Aligned_cols=30 Identities=23% Similarity=0.218 Sum_probs=27.7
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
+.|.+|+|||+|||+|||+.+++.+.+++.
T Consensus 528 ~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak 557 (614)
T PRK12308 528 AEIRSLGVEAGWQVQGQGSALVQYLVEKAR 557 (614)
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 479999999999999999999999998875
No 70
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.89 E-value=0.0022 Score=78.45 Aligned_cols=166 Identities=26% Similarity=0.303 Sum_probs=102.5
Q ss_pred cccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHH-hh-
Q 003262 53 IKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVC-KG- 130 (835)
Q Consensus 53 v~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~-kg- 130 (835)
+.++...||.+|+...+.+ +.-..|.|=+|.|||+++-.+|-.+++.| +.|++||=+..+|..+.-=+. -+
T Consensus 666 ~~~~LN~dQr~A~~k~L~a------edy~LI~GMPGTGKTTtI~~LIkiL~~~g-kkVLLtsyThsAVDNILiKL~~~~i 738 (1100)
T KOG1805|consen 666 ILLRLNNDQRQALLKALAA------EDYALILGMPGTGKTTTISLLIKILVALG-KKVLLTSYTHSAVDNILIKLKGFGI 738 (1100)
T ss_pred HHhhcCHHHHHHHHHHHhc------cchheeecCCCCCchhhHHHHHHHHHHcC-CeEEEEehhhHHHHHHHHHHhccCc
Confidence 4568899999999876553 23457999999999999999999999998 579999999999888763321 12
Q ss_pred -hccccccccccceeeecC--CCC-------CCcceeEeeee--eccceeEEeeCCccccccCCCcEEEEecccCCCHHH
Q 003262 131 -FNAIEYKEHIDYDIVRSS--NPD-------LRKPIVRINIY--RQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPV 198 (835)
Q Consensus 131 -l~~lgy~e~~dy~i~~st--~p~-------~~~aivrvni~--~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpl 198 (835)
+-.||-.+.++=++-+.+ |.- ..+.+-++.|. ..+. -++-+-..-+.|..|||||..|++|+
T Consensus 739 ~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClg------i~~plf~~R~FD~cIiDEASQI~lP~ 812 (1100)
T KOG1805|consen 739 YILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLG------INHPLFVNRQFDYCIIDEASQILLPL 812 (1100)
T ss_pred ceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccC------CCchhhhccccCEEEEccccccccch
Confidence 222466554433322222 110 00111111111 1111 11223344579999999999999999
Q ss_pred HHHhh---------c-CC----eEEEEeeccCCcccCCchhHHHHHHhhhcCC
Q 003262 199 VRSLL---------G-PY----LVFLSSTVNGYEGTGRSLSLKLLHQLEQQSH 237 (835)
Q Consensus 199 lk~Ll---------~-~y----~vflsSTi~GYEGTGR~fsLKl~~~L~~~~~ 237 (835)
.-.=+ | || +| =| =|..-+|+++-+++.|.+..|
T Consensus 813 ~LgPL~~s~kFVLVGDh~QLpPLV--~s----~ear~~Gl~~SLFkrL~e~hp 859 (1100)
T KOG1805|consen 813 CLGPLSFSNKFVLVGDHYQLPPLV--RS----SEARQEGLSESLFKRLSEKHP 859 (1100)
T ss_pred hhhhhhhcceEEEecccccCCccc--cc----hhhhhcCcchHHHHHHhhhCc
Confidence 64333 1 22 22 12 245556677777888877554
No 71
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.88 E-value=0.0083 Score=63.25 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
...++|+|++|.|||.++=..+..+...|++-+|+++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 45899999999999998865555555667666777763
No 72
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.83 E-value=0.003 Score=63.61 Aligned_cols=65 Identities=25% Similarity=0.326 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHHHHhccCCCc-EEEEEcCCCCCHHHHHHHHHHHHH-------HcCCCcEEEecCChHhHHHHHHHHHh
Q 003262 58 TLDQGKAVITFLDAILDKTLRS-TVALLAARGRGKSAALGLAIAGAI-------AAGYSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 58 T~DQakAl~~~~~~i~ek~~r~-~v~LTA~RGRGKSAaLGlaiA~ai-------~~g~~nI~VTAPs~enl~tlFef~~k 129 (835)
...|.+||..++. +. ..+|.|+.|.|||+++--+++.++ ......|+||||+-.++..+.+-+.+
T Consensus 3 n~~Q~~Ai~~~~~-------~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 3 NESQREAIQSALS-------SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -HHHHHHHHHHCT-------SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHc-------CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4678998875543 22 489999999999998887777663 23456899999999999999988877
No 73
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=96.80 E-value=0.0049 Score=61.37 Aligned_cols=79 Identities=16% Similarity=0.079 Sum_probs=56.2
Q ss_pred EEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccC
Q 003262 419 VRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQ 498 (835)
Q Consensus 419 VRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~ 498 (835)
+.++|+|+|||+|||+.+++.+.+|.-...
T Consensus 86 ~~~~v~~~~~g~G~g~~l~~~l~~~~~~~~-------------------------------------------------- 115 (186)
T PRK15130 86 FQIIISPEYQGKGLATRAAKLAMDYGFTVL-------------------------------------------------- 115 (186)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHhhcC--------------------------------------------------
Confidence 479999999999999999999998763110
Q ss_pred CCCcceE-EEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCC
Q 003262 499 PEKLNYI-GVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLH 549 (835)
Q Consensus 499 ~~~lDyl-GvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~ 549 (835)
++..| ....--+....+||+|.||..+..........|+.--+.+-.+.
T Consensus 116 --~~~rv~~~v~~~N~~s~~~yek~GF~~~~~~~~~~~~~g~~~d~~~~~~~ 165 (186)
T PRK15130 116 --NLYKLYLIVDKENEKAIHIYRKLGFEVEGELIHEFFINGEYRNTIRMCIF 165 (186)
T ss_pred --CceEEEEEEccCCHHHHHHHHHCCCEEEEEEeheEEECCEEEEEEEEEee
Confidence 11111 12223368999999999999999887776677876544444443
No 74
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=96.79 E-value=0.012 Score=73.67 Aligned_cols=146 Identities=19% Similarity=0.197 Sum_probs=91.2
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccc
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 135 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lg 135 (835)
-.|.+|.+|+..+...+...+. .-++++|+.|.|||.+.-+++..++..| ..++|-+|+.+=+...++.+.+-|..++
T Consensus 451 ~~T~~Q~~aI~~I~~d~~~~~~-~d~Ll~adTGsGKT~val~a~l~al~~g-~qvlvLvPT~~LA~Q~~~~f~~~~~~~~ 528 (926)
T TIGR00580 451 EETPDQLKAIEEIKADMESPRP-MDRLVCGDVGFGKTEVAMRAAFKAVLDG-KQVAVLVPTTLLAQQHFETFKERFANFP 528 (926)
T ss_pred CCCHHHHHHHHHHHhhhcccCc-CCEEEECCCCccHHHHHHHHHHHHHHhC-CeEEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 4699999999988876654432 3568999999999998877777777777 4799999999999998887766554433
Q ss_pred ccccccceeeec-CCCCCCcc--------eeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhh---
Q 003262 136 YKEHIDYDIVRS-SNPDLRKP--------IVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLL--- 203 (835)
Q Consensus 136 y~e~~dy~i~~s-t~p~~~~a--------ivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll--- 203 (835)
..- .++.+ ....-.+. -+.| |..+|+ .+.. ...+....+||||||=.........|.
T Consensus 529 i~v----~~Lsg~~~~~e~~~~~~~l~~g~~dI-VIGTp~----ll~~--~v~f~~L~llVIDEahrfgv~~~~~L~~~~ 597 (926)
T TIGR00580 529 VTI----ELLSRFRSAKEQNEILKELASGKIDI-LIGTHK----LLQK--DVKFKDLGLLIIDEEQRFGVKQKEKLKELR 597 (926)
T ss_pred cEE----EEEeccccHHHHHHHHHHHHcCCceE-EEchHH----HhhC--CCCcccCCEEEeecccccchhHHHHHHhcC
Confidence 210 01111 00000000 0111 122331 1111 112456789999999888776655543
Q ss_pred -cCCeEEEEeec
Q 003262 204 -GPYLVFLSSTV 214 (835)
Q Consensus 204 -~~y~vflsSTi 214 (835)
++.+++||.|.
T Consensus 598 ~~~~vL~~SATp 609 (926)
T TIGR00580 598 TSVDVLTLSATP 609 (926)
T ss_pred CCCCEEEEecCC
Confidence 23466788884
No 75
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.79 E-value=0.0065 Score=65.01 Aligned_cols=133 Identities=15% Similarity=0.193 Sum_probs=77.4
Q ss_pred cHHHHHHHHHHHHHHhccCC--CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccc
Q 003262 58 TLDQGKAVITFLDAILDKTL--RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 135 (835)
Q Consensus 58 T~DQakAl~~~~~~i~ek~~--r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lg 135 (835)
+.+|.+|+..+.+ +.+... ...++|+|+.|.|||.++--.+..++..|++-+|+|++ .+++.+...+..-
T Consensus 78 ~~~q~~al~~a~~-~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~------~l~~~l~~~~~~~- 149 (244)
T PRK07952 78 CEGQMNALSKARQ-YVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVA------DIMSAMKDTFSNS- 149 (244)
T ss_pred CchHHHHHHHHHH-HHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHH------HHHHHHHHHHhhc-
Confidence 4566666655544 333211 24799999999999998865555566668777788654 2333322221000
Q ss_pred ccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcc-ccccCCCcEEEEecccCCCHH-----HHHHhh-cCC--
Q 003262 136 YKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHE-HEKLAQVELLVIDEAAAIPLP-----VVRSLL-GPY-- 206 (835)
Q Consensus 136 y~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d-~~~l~~adLLvIDEAAAIPlp-----llk~Ll-~~y-- 206 (835)
+. ...+ +..+..+|||||||..+.+.. ++-.++ .+|
T Consensus 150 -----~~------------------------------~~~~~l~~l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~ 194 (244)
T PRK07952 150 -----ET------------------------------SEEQLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSS 194 (244)
T ss_pred -----cc------------------------------cHHHHHHHhccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 00 0001 122457999999999998743 455566 344
Q ss_pred --eEEEEeeccCCcccCCchhHHHHHHhhh
Q 003262 207 --LVFLSSTVNGYEGTGRSLSLKLLHQLEQ 234 (835)
Q Consensus 207 --~vflsSTi~GYEGTGR~fsLKl~~~L~~ 234 (835)
.+|++|-.+ ++.-+..|.=|.+..|+.
T Consensus 195 ~~~tiitSNl~-~~~l~~~~g~ri~sRl~~ 223 (244)
T PRK07952 195 KRPTGMLTNSN-MEEMTKLLGERVMDRMRL 223 (244)
T ss_pred CCCEEEeCCCC-HHHHHHHhChHHHHHHHH
Confidence 366555544 455555555567777753
No 76
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.78 E-value=0.009 Score=66.49 Aligned_cols=166 Identities=13% Similarity=0.224 Sum_probs=97.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCcc
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAI--AAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKP 155 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai--~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~a 155 (835)
++.++|+|+.|.|||.++- .+|..+ .....++.+..++..-..++.+-+.+.. ..... ...
T Consensus 1 K~v~~I~G~aGTGKTvla~-~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~----~~~~~------------~~~ 63 (352)
T PF09848_consen 1 KQVILITGGAGTGKTVLAL-NLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKY----NPKLK------------KSD 63 (352)
T ss_pred CeEEEEEecCCcCHHHHHH-HHHHHhhccccCCceEEEEecchHHHHHHHHHhhhc----ccchh------------hhh
Confidence 3579999999999997654 445444 2223455666666666666665544322 00000 000
Q ss_pred eeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCH-----------HHHHHhhcCC--eEEE---EeeccCCcc
Q 003262 156 IVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPL-----------PVVRSLLGPY--LVFL---SSTVNGYEG 219 (835)
Q Consensus 156 ivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPl-----------pllk~Ll~~y--~vfl---sSTi~GYEG 219 (835)
+.....-|+.+.+. .......|++|||||==+.- +.|..++..- +||| .=+|+..|-
T Consensus 64 ------~~~~~~~i~~~~~~-~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~~kv~v~f~D~~Q~i~~~e~ 136 (352)
T PF09848_consen 64 ------FRKPTSFINNYSES-DKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKRAKVVVFFYDENQSIRPSEI 136 (352)
T ss_pred ------hhhhHHHHhhcccc-cccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhcCCEEEEEEccccEeecccC
Confidence 01111112222211 11235789999999988877 7888888533 3433 346666663
Q ss_pred cCCchhHHHHHHhhhcCCCCCCCcCCCccCCceeE-EEeccccccCCCCchHHHHHHhcCCCCCC
Q 003262 220 TGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKK-IELSESIRYAPGDPIESWLNGLLCLDVMN 283 (835)
Q Consensus 220 TGR~fsLKl~~~L~~~~~~~~~~~~~~~~~r~~~e-i~L~ePIRya~gDPvE~WLn~lLcLDa~~ 283 (835)
.+... ++.+.+... ....+ ++|++.+|=..++-+-.|++.+|=.+...
T Consensus 137 ~~~~~----l~~~~~~~~------------~~~~~~~~L~~q~R~~~~~~~~~wI~~ll~~~~~~ 185 (352)
T PF09848_consen 137 GTLEN----LEEIAENLG------------IEVRHFFELKTQFRCHGSKEYIDWIDNLLDNKNIS 185 (352)
T ss_pred CCHHH----HHHHHHhcC------------CccccCcCcCcceecCCCHHHHHHHHHHHhccccC
Confidence 33333 344433321 12234 39999999999999999999999877654
No 77
>PRK12377 putative replication protein; Provisional
Probab=96.75 E-value=0.01 Score=63.57 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=72.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCcceeE
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVR 158 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aivr 158 (835)
..++|+|+.|+|||.++...+-.++..|++-+|+|.|. +++.+..+++.- + .+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~------l~~~l~~~~~~~---~--~~---------------- 154 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPD------VMSRLHESYDNG---Q--SG---------------- 154 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHH------HHHHHHHHHhcc---c--hH----------------
Confidence 57899999999999998876667777888888998873 333333222110 0 00
Q ss_pred eeeeeccceeEEeeCCccccccCCCcEEEEecccCCCH-----HHHHHhh-cCC---e-EEEEeeccCCcccCCchhHHH
Q 003262 159 INIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPL-----PVVRSLL-GPY---L-VFLSSTVNGYEGTGRSLSLKL 228 (835)
Q Consensus 159 vni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPl-----pllk~Ll-~~y---~-vflsSTi~GYEGTGR~fsLKl 228 (835)
.+-+..+..+|||||||.-+.+. .+|-.++ .+| + +|+ ||=.+++.-+..|.=++
T Consensus 155 ---------------~~~l~~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptii-tSNl~~~~l~~~~~~ri 218 (248)
T PRK12377 155 ---------------EKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGM-LTNLNHEAMSTLLGERV 218 (248)
T ss_pred ---------------HHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEE-EcCCCHHHHHHHhhHHH
Confidence 01122356899999999988763 2444555 344 2 544 46666776666677778
Q ss_pred HHHhhh
Q 003262 229 LHQLEQ 234 (835)
Q Consensus 229 ~~~L~~ 234 (835)
+..|..
T Consensus 219 ~dRl~~ 224 (248)
T PRK12377 219 MDRMTM 224 (248)
T ss_pred HHHHhh
Confidence 888864
No 78
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=96.74 E-value=0.002 Score=68.64 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=24.6
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHHH
Q 003262 417 RIVRIATHPSAMRLGYGSTAVELLTRY 443 (835)
Q Consensus 417 RIVRIAvhPd~q~mGyGsraL~~L~~~ 443 (835)
.|..|+|||+|||+|+|+++|+.+.+.
T Consensus 72 ~~~~l~V~p~~rg~GiG~~Ll~~~~~~ 98 (292)
T TIGR03448 72 AMAELVVHPAHRRRGIGRALIRALLAK 98 (292)
T ss_pred eEEEEEECHhhcCCCHHHHHHHHHHHh
Confidence 588999999999999999999988753
No 79
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=96.68 E-value=0.0037 Score=66.62 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=25.3
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 417 RIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 417 RIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.|--|+|+|+|||+|||+.+++.+.+++.
T Consensus 228 ~i~~~~V~p~~rg~GiG~~ll~~~~~~~~ 256 (292)
T TIGR03448 228 EVYVVGVDPAAQGRGLGDALTLIGLHHLA 256 (292)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 45558999999999999999999988764
No 80
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.64 E-value=0.022 Score=66.10 Aligned_cols=136 Identities=19% Similarity=0.188 Sum_probs=82.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHH-HHHHcCC--CcEEEecCChHhHHHHHHHHHhhhccccccc-cccceeeecCCCCCCc
Q 003262 79 STVALLAARGRGKSAALGLAIA-GAIAAGY--SNIFVTAPSPENLKTLFEFVCKGFNAIEYKE-HIDYDIVRSSNPDLRK 154 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA-~ai~~g~--~nI~VTAPs~enl~tlFef~~kgl~~lgy~e-~~dy~i~~st~p~~~~ 154 (835)
+.+.|.=+||-|||++++..+. .++..|. ..|+++|++.+..+.+|..+.+-++...... .....+..+.
T Consensus 23 ~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~~~~~~~~~------ 96 (477)
T PF03354_consen 23 REVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEASPELRKRKKPKIIKSN------ 96 (477)
T ss_pred EEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHhChhhccchhhhhhhhh------
Confidence 3577777999999999875433 3334443 5799999999999999988765544421110 0001111110
Q ss_pred ceeEeeeeeccceeEEeeCCcccccc-CCCcEEEEecccCCCHH-HHHHhhc------CCeEEEEeeccCCcccCCc
Q 003262 155 PIVRINIYRQHRQTIQYMEPHEHEKL-AQVELLVIDEAAAIPLP-VVRSLLG------PYLVFLSSTVNGYEGTGRS 223 (835)
Q Consensus 155 aivrvni~~~hrq~Iqyi~P~d~~~l-~~adLLvIDEAAAIPlp-llk~Ll~------~y~vflsSTi~GYEGTGR~ 223 (835)
-.+|. +..-...+++++.+.-..- ..++++|+||+.+.+-. +...|.. ..++|+-|| .|+.-+|-.
T Consensus 97 -~~~i~-~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r~~pl~~~IST-ag~~~~~~~ 170 (477)
T PF03354_consen 97 -KKEIE-FPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGARPNPLIIIIST-AGDDRSGPC 170 (477)
T ss_pred -ceEEE-EcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccCCCceEEEEeC-CCCCCCcHH
Confidence 01111 1222456777766533221 25899999999999986 6666652 225654444 888876643
No 81
>PRK04296 thymidine kinase; Provisional
Probab=96.63 E-value=0.011 Score=60.39 Aligned_cols=54 Identities=20% Similarity=0.162 Sum_probs=39.7
Q ss_pred CCCcEEEEecccCCCHHHHHHhh----cC-CeEEEEeeccCCcccCCchhHHHHHHhhh
Q 003262 181 AQVELLVIDEAAAIPLPVVRSLL----GP-YLVFLSSTVNGYEGTGRSLSLKLLHQLEQ 234 (835)
Q Consensus 181 ~~adLLvIDEAAAIPlpllk~Ll----~~-y~vflsSTi~GYEGTGR~fsLKl~~~L~~ 234 (835)
++.|+||||||--++...+..++ .. ..|+++.-.+-|.|...+-+.+++..-..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~ 135 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADK 135 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCe
Confidence 36899999999999877444444 22 25777888888999888887787776543
No 82
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=96.60 E-value=0.0036 Score=71.88 Aligned_cols=66 Identities=21% Similarity=0.225 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC--------CcEEEecCChHhHHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGY--------SNIFVTAPSPENLKTLFEFVC 128 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~--------~nI~VTAPs~enl~tlFef~~ 128 (835)
.|..|.+|+-.+++ + +-+++.|+.|.|||.+--+.+-..+..+. .+++|.+|+.+=+..+++.+.
T Consensus 24 pt~iQ~~ai~~il~----g---~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~ 96 (456)
T PRK10590 24 PTPIQQQAIPAVLE----G---RDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVR 96 (456)
T ss_pred CCHHHHHHHHHHhC----C---CCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHH
Confidence 68999999876543 2 34899999999999998887766554321 258999999999888887765
Q ss_pred h
Q 003262 129 K 129 (835)
Q Consensus 129 k 129 (835)
+
T Consensus 97 ~ 97 (456)
T PRK10590 97 D 97 (456)
T ss_pred H
Confidence 4
No 83
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.59 E-value=0.018 Score=59.58 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=32.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCh
Q 003262 77 LRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP 117 (835)
Q Consensus 77 ~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~ 117 (835)
...+++|+|++|.|||+++-.....+...|..-++|++.+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 34689999999999999988666666667777788887553
No 84
>PRK10536 hypothetical protein; Provisional
Probab=96.57 E-value=0.015 Score=63.01 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=72.0
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcEEEecCChHh--------------H
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI-AAGYSNIFVTAPSPEN--------------L 120 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai-~~g~~nI~VTAPs~en--------------l 120 (835)
.+|..|..++..+ .+ ...+++||+-|.|||.+.--+...++ ...|..|+||-|..+. +
T Consensus 59 p~n~~Q~~~l~al----~~---~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 59 ARNEAQAHYLKAI----ES---KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred CCCHHHHHHHHHH----hc---CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 4677888866533 33 24899999999999987643333334 4458999999998543 2
Q ss_pred HHHHHHHHhhhccc-cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccc-cCCCcEEEEecccCCCHHH
Q 003262 121 KTLFEFVCKGFNAI-EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEK-LAQVELLVIDEAAAIPLPV 198 (835)
Q Consensus 121 ~tlFef~~kgl~~l-gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~-l~~adLLvIDEAAAIPlpl 198 (835)
...+.-+.-.|+.+ |.. ..+|-+ +.-...|++.+..-.-. --..+++|||||-.+....
T Consensus 132 ~p~~~pi~D~L~~~~~~~-~~~~~~------------------~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~ 192 (262)
T PRK10536 132 APYFRPVYDVLVRRLGAS-FMQYCL------------------RPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQ 192 (262)
T ss_pred HHHHHHHHHHHHHHhChH-HHHHHH------------------HhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHH
Confidence 22333322222221 110 011000 00123455554432211 1246899999999999999
Q ss_pred HHHhhc
Q 003262 199 VRSLLG 204 (835)
Q Consensus 199 lk~Ll~ 204 (835)
++.++-
T Consensus 193 ~k~~lt 198 (262)
T PRK10536 193 MKMFLT 198 (262)
T ss_pred HHHHHh
Confidence 999993
No 85
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.55 E-value=0.013 Score=62.81 Aligned_cols=114 Identities=22% Similarity=0.302 Sum_probs=74.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCccee
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIV 157 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aiv 157 (835)
+.-++++|+.|.|||.++.-..-.++..|.+-+|||+|.- +.=+..+++. |-
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el------~~~Lk~~~~~-~~--------------------- 156 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDL------LSKLKAAFDE-GR--------------------- 156 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHH------HHHHHHHHhc-Cc---------------------
Confidence 4578999999999999876444445566888899999832 2222222211 00
Q ss_pred EeeeeeccceeEEeeCCccccc-cCCCcEEEEecccCCCHH-----HHHHhhc-----CCeEEEEeeccCCcccCCchh-
Q 003262 158 RINIYRQHRQTIQYMEPHEHEK-LAQVELLVIDEAAAIPLP-----VVRSLLG-----PYLVFLSSTVNGYEGTGRSLS- 225 (835)
Q Consensus 158 rvni~~~hrq~Iqyi~P~d~~~-l~~adLLvIDEAAAIPlp-----llk~Ll~-----~y~vflsSTi~GYEGTGR~fs- 225 (835)
....+.. +..+|||||||-.+.|.. .+-+++. .++ +=||..-|+.-++-|.
T Consensus 157 ---------------~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~--~~tsN~~~~~~~~~~~~ 219 (254)
T COG1484 157 ---------------LEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSL--IITSNLSFGEWDELFGD 219 (254)
T ss_pred ---------------hHHHHHHHhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhccc--eeecCCChHHHHhhccC
Confidence 0012333 568999999999999975 2333332 224 4577777888887777
Q ss_pred ----HHHHHHhhhcC
Q 003262 226 ----LKLLHQLEQQS 236 (835)
Q Consensus 226 ----LKl~~~L~~~~ 236 (835)
-++++.+...+
T Consensus 220 ~~~~e~~~dRi~~~~ 234 (254)
T COG1484 220 DALTEALLDRILHHS 234 (254)
T ss_pred chhHHHHHHHHHhcc
Confidence 67888887654
No 86
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=96.55 E-value=0.027 Score=63.98 Aligned_cols=65 Identities=26% Similarity=0.242 Sum_probs=49.3
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc------CCCcEEEecCChHhHHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA------GYSNIFVTAPSPENLKTLFEFVC 128 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~------g~~nI~VTAPs~enl~tlFef~~ 128 (835)
.|.-|.+|+..+++ + +-+++.|+.|.|||.+.-+.+...+.. +..+++|.+|+.+-+..+++-+.
T Consensus 24 p~~iQ~~ai~~~~~----g---~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~ 94 (434)
T PRK11192 24 PTAIQAEAIPPALD----G---RDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQAR 94 (434)
T ss_pred CCHHHHHHHHHHhC----C---CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHH
Confidence 57899999877653 2 248899999999999887766554421 23579999999998888776543
No 87
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=96.51 E-value=0.007 Score=47.01 Aligned_cols=32 Identities=25% Similarity=0.183 Sum_probs=29.7
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|.+++|+|+|||+|+|++++..+.+++.
T Consensus 24 ~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~ 55 (65)
T cd04301 24 DTAYIGDLAVLPEYRGKGIGSALLEAAEEEAR 55 (65)
T ss_pred ccEEEEEEEECHHHcCcCHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999875
No 88
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=96.48 E-value=0.032 Score=59.87 Aligned_cols=110 Identities=17% Similarity=0.272 Sum_probs=54.5
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCC--CcEEEecCChHhHHHH-HHHHHhhhccccccccccceeeecCCCCCCcceeE
Q 003262 82 ALLAARGRGKSAALGLAIAGAIAAGY--SNIFVTAPSPENLKTL-FEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVR 158 (835)
Q Consensus 82 ~LTA~RGRGKSAaLGlaiA~ai~~g~--~nI~VTAPs~enl~tl-Fef~~kgl~~lgy~e~~dy~i~~st~p~~~~aivr 158 (835)
+|.++||-|||.++.+.+...+.... ..|+++ |+-..++.. +.+.. +...+--. ...+.... .++ +.+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~-~~~---~~~-- 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARDIFGRFWK-GIIELLPS-WFEIKFNE-WND---RKI-- 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHHHHHHHHH-HHHHTS-T-TTS--EEE-E-S---SEE--
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHHHHHHhHH-HHHHHHHH-hcCccccc-CCC---CcE--
Confidence 47899999999999887766554433 345555 666666664 33211 11111101 11111110 000 111
Q ss_pred eeeeeccceeEEeeCCccc---ccc--CCCcEEEEecccCCCHHHHHHhh
Q 003262 159 INIYRQHRQTIQYMEPHEH---EKL--AQVELLVIDEAAAIPLPVVRSLL 203 (835)
Q Consensus 159 vni~~~hrq~Iqyi~P~d~---~~l--~~adLLvIDEAAAIPlpllk~Ll 203 (835)
.+ ....+|+|..-++. ..+ ..+++++|||||-+|-.....++
T Consensus 72 --~~-~nG~~i~~~~~~~~~~~~~~~G~~~~~i~iDE~~~~~~~~~~~~~ 118 (384)
T PF03237_consen 72 --IL-PNGSRIQFRGADSPDSGDNIRGFEYDLIIIDEAAKVPDDAFSELI 118 (384)
T ss_dssp --EE-TTS-EEEEES-----SHHHHHTS--SEEEEESGGGSTTHHHHHHH
T ss_pred --Ee-cCceEEEEeccccccccccccccccceeeeeecccCchHHHHHHH
Confidence 11 34556888775432 222 46899999999999887766665
No 89
>PRK01172 ski2-like helicase; Provisional
Probab=96.48 E-value=0.011 Score=71.24 Aligned_cols=139 Identities=19% Similarity=0.203 Sum_probs=82.1
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEY 136 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy 136 (835)
.+.-|.+++..+ .+ ...+++.|+.|.|||.+.-+++...+..|. ++++.+|..+-+...++-+.+ |..+|.
T Consensus 23 l~~~Q~~ai~~l----~~---~~nvlv~apTGSGKTl~a~lail~~l~~~~-k~v~i~P~raLa~q~~~~~~~-l~~~g~ 93 (674)
T PRK01172 23 LYDHQRMAIEQL----RK---GENVIVSVPTAAGKTLIAYSAIYETFLAGL-KSIYIVPLRSLAMEKYEELSR-LRSLGM 93 (674)
T ss_pred CCHHHHHHHHHH----hc---CCcEEEECCCCchHHHHHHHHHHHHHHhCC-cEEEEechHHHHHHHHHHHHH-HhhcCC
Confidence 588999998754 22 236899999999999988888777766663 566667999888888766543 333332
Q ss_pred cccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccc--------cccCCCcEEEEecccCCC----HHHHHHhh-
Q 003262 137 KEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEH--------EKLAQVELLVIDEAAAIP----LPVVRSLL- 203 (835)
Q Consensus 137 ~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~--------~~l~~adLLvIDEAAAIP----lpllk~Ll- 203 (835)
. +...++ ++...... . .+..|-...|+.. ..+.+.+++|||||=.+. -+.+..++
T Consensus 94 ~------v~~~~G-~~~~~~~~---~--~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~ 161 (674)
T PRK01172 94 R------VKISIG-DYDDPPDF---I--KRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLS 161 (674)
T ss_pred e------EEEEeC-CCCCChhh---h--ccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHH
Confidence 2 111111 00000000 0 0112334444321 124568999999999884 12333332
Q ss_pred -----c--CCeEEEEeeccC
Q 003262 204 -----G--PYLVFLSSTVNG 216 (835)
Q Consensus 204 -----~--~y~vflsSTi~G 216 (835)
. ..+|.||.|+..
T Consensus 162 ~~~~~~~~~riI~lSATl~n 181 (674)
T PRK01172 162 SARYVNPDARILALSATVSN 181 (674)
T ss_pred HHHhcCcCCcEEEEeCccCC
Confidence 1 236789999843
No 90
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.45 E-value=0.013 Score=70.43 Aligned_cols=64 Identities=25% Similarity=0.310 Sum_probs=49.8
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC--CCcEEEecCChHhHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG--YSNIFVTAPSPENLKTLFEFV 127 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g--~~nI~VTAPs~enl~tlFef~ 127 (835)
.|.-|++++-.+++ + +-+++.|+.|.|||++.++.+...+... ...++|.+|+.+=+..+.+-+
T Consensus 29 ptpiQ~~ai~~ll~----g---~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l 94 (629)
T PRK11634 29 PSPIQAECIPHLLN----G---RDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAM 94 (629)
T ss_pred CCHHHHHHHHHHHc----C---CCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHH
Confidence 67889998876543 2 3589999999999999999987776543 347999999998877665543
No 91
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=96.43 E-value=0.0055 Score=70.27 Aligned_cols=63 Identities=24% Similarity=0.265 Sum_probs=49.0
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC--CcEEEecCChHhHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGY--SNIFVTAPSPENLKTLFEF 126 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~--~nI~VTAPs~enl~tlFef 126 (835)
.|..|.+|+-.+++ + +-+++.|+.|.|||++.++++-..+..+. ..++|-+|+.+=+..+.+-
T Consensus 27 ~t~iQ~~ai~~~l~----g---~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~ 91 (460)
T PRK11776 27 MTPIQAQSLPAILA----G---KDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKE 91 (460)
T ss_pred CCHHHHHHHHHHhc----C---CCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHH
Confidence 68899999986653 2 35899999999999999998887775442 2578888999877766543
No 92
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.38 E-value=0.022 Score=58.36 Aligned_cols=43 Identities=28% Similarity=0.242 Sum_probs=30.8
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCh
Q 003262 75 KTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP 117 (835)
Q Consensus 75 k~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~ 117 (835)
......+.|+|++|.|||+++-..+-.+...|..-++|++...
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 3445689999999999999887655555555655567766543
No 93
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=96.37 E-value=0.014 Score=58.68 Aligned_cols=77 Identities=9% Similarity=0.030 Sum_probs=55.9
Q ss_pred EEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccccc
Q 003262 418 IVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRER 497 (835)
Q Consensus 418 IVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~ 497 (835)
.+.+.++|+|+|+|||+.+++.+.+|.....
T Consensus 106 eig~~i~~~~~G~G~~~ea~~~ll~~~~~~l------------------------------------------------- 136 (194)
T PRK10809 106 YLGYSLGQKWQGQGLMFEALQAAIRYMQRQQ------------------------------------------------- 136 (194)
T ss_pred EEEEEECHHHcCCCHHHHHHHHHHHHHHhcC-------------------------------------------------
Confidence 4568899999999999999999999864211
Q ss_pred CCCCcc-eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCC--ceEEEEc
Q 003262 498 QPEKLN-YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGE--HTCMVLK 546 (835)
Q Consensus 498 ~~~~lD-ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGE--hS~IMlr 546 (835)
+++ .....+--+..-.+|++|+||+.+.+........|+ ..++|-+
T Consensus 137 ---~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~~~~~~~~~g~~~d~~~~~~ 185 (194)
T PRK10809 137 ---HMHRIMANYMPHNKRSGDLLARLGFEKEGYAKDYLLIDGQWRDHVLTAL 185 (194)
T ss_pred ---CceEEEEEeeCCCHHHHHHHHHCCCcEEeeeccccccCCeEEEEEEeee
Confidence 001 112234447899999999999999887766666785 4556644
No 94
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=96.37 E-value=0.014 Score=64.98 Aligned_cols=147 Identities=23% Similarity=0.404 Sum_probs=99.6
Q ss_pred cCCCCcccc--ccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHH
Q 003262 45 DDFPVGPLI--KKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKT 122 (835)
Q Consensus 45 ~~~p~g~Lv--~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~t 122 (835)
...|.++.+ +...|..|.+|-..++..|..+ .+.++-|--|.||+-.+=-+|+.++..| .+|.|.||..+-+..
T Consensus 84 ~~fp~~s~L~W~G~Ls~~Q~~as~~l~q~i~~k---~~~lv~AV~GaGKTEMif~~i~~al~~G-~~vciASPRvDVclE 159 (441)
T COG4098 84 YAFPKKSVLQWKGTLSPGQKKASNQLVQYIKQK---EDTLVWAVTGAGKTEMIFQGIEQALNQG-GRVCIASPRVDVCLE 159 (441)
T ss_pred cCCCccceeeeccccChhHHHHHHHHHHHHHhc---CcEEEEEecCCCchhhhHHHHHHHHhcC-CeEEEecCcccchHH
Confidence 345666644 3577899999999999988765 4678999999999999999999999999 599999999999999
Q ss_pred HHHHHHhhhccccccccccceeeecCCCC-CCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHH---H
Q 003262 123 LFEFVCKGFNAIEYKEHIDYDIVRSSNPD-LRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLP---V 198 (835)
Q Consensus 123 lFef~~kgl~~lgy~e~~dy~i~~st~p~-~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlp---l 198 (835)
|..-+...|... |..+.+...++ |...+| |-..| |.++|- ...|++||||.-|.|.. +
T Consensus 160 l~~Rlk~aF~~~------~I~~Lyg~S~~~fr~plv---VaTtH-QLlrFk--------~aFD~liIDEVDAFP~~~d~~ 221 (441)
T COG4098 160 LYPRLKQAFSNC------DIDLLYGDSDSYFRAPLV---VATTH-QLLRFK--------QAFDLLIIDEVDAFPFSDDQS 221 (441)
T ss_pred HHHHHHHhhccC------CeeeEecCCchhccccEE---EEehH-HHHHHH--------hhccEEEEeccccccccCCHH
Confidence 988777666422 12222222211 221111 11122 333332 24799999999999984 3
Q ss_pred HHHhhc------CCeEEEEee
Q 003262 199 VRSLLG------PYLVFLSST 213 (835)
Q Consensus 199 lk~Ll~------~y~vflsST 213 (835)
|..-.. .-.++|+.|
T Consensus 222 L~~Av~~ark~~g~~IylTAT 242 (441)
T COG4098 222 LQYAVKKARKKEGATIYLTAT 242 (441)
T ss_pred HHHHHHHhhcccCceEEEecC
Confidence 433331 236677766
No 95
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=96.36 E-value=0.018 Score=57.06 Aligned_cols=78 Identities=13% Similarity=-0.006 Sum_probs=52.8
Q ss_pred EEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccC
Q 003262 419 VRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQ 498 (835)
Q Consensus 419 VRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~ 498 (835)
+-+.++|+|||+|||+.+++++.+|+....
T Consensus 96 ig~~i~~~~~g~G~~tea~~~l~~~~~~~~-------------------------------------------------- 125 (179)
T PRK10151 96 IGYWLDESHQGQGIISQALQALIHHYAQSG-------------------------------------------------- 125 (179)
T ss_pred EEEEEChhhcCCcHHHHHHHHHHHHHHhhC--------------------------------------------------
Confidence 346689999999999999999999874211
Q ss_pred CCCcce-EEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCC--ceEEEEccC
Q 003262 499 PEKLNY-IGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGE--HTCMVLKPL 548 (835)
Q Consensus 499 ~~~lDy-lGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGE--hS~IMlr~L 548 (835)
+++- ....+--+..-.++++|+||..+......-...|+ ..++|-+.+
T Consensus 126 --~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~~~~~~~~g~~~D~~~~~~~~ 176 (179)
T PRK10151 126 --ELRRFVIKCRVDNPASNQVALRNGFTLEGCLKQAEYLNGAYDDVNLYARII 176 (179)
T ss_pred --CccEEEEEEcCCCHHHHHHHHHCCCEEEeEeccceEECCEEEEEEEEEEee
Confidence 0111 11234447889999999999998776544444564 345555443
No 96
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=96.24 E-value=0.021 Score=54.69 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=54.1
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHH-hcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccc
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYY-EGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLV 492 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~-~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~ 492 (835)
.+.-++.+-|.|+||++|+|+.+++.+.+++ ..... .++
T Consensus 75 ~~~~~~~~~v~~~~~~~gig~~l~~~l~~~af~~~~~---------------~~i------------------------- 114 (155)
T PF13420_consen 75 NHTAELSIYVSPDYRGKGIGRKLLDELIEYAFKELGI---------------HKI------------------------- 114 (155)
T ss_dssp TTEEEEEEEEEGGGTTSSHHHHHHHHHHHHH-HHTT----------------CEE-------------------------
T ss_pred CCEEEEeeEEChhHCCCcHHHHHHHHHHHHhhhccCe---------------EEE-------------------------
Confidence 3445666888899999999999999999987 31110 000
Q ss_pred cccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCce
Q 003262 493 HLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHT 541 (835)
Q Consensus 493 ~l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS 541 (835)
++.| +.-+...++||++.||..+.........-|++.
T Consensus 115 -----------~~~v-~~~N~~~i~~~~~~GF~~~g~~~~~~~~~~~y~ 151 (155)
T PF13420_consen 115 -----------YLEV-FSSNEKAINFYKKLGFEEEGELKDHIFINGKYY 151 (155)
T ss_dssp -----------EEEE-ETT-HHHHHHHHHTTEEEEEEEEEEEEETTEEE
T ss_pred -----------EEEE-ecCCHHHHHHHHhCCCEEEEEEecEEEECCeEE
Confidence 1222 555899999999999999998877766666543
No 97
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.19 E-value=0.015 Score=61.61 Aligned_cols=68 Identities=19% Similarity=0.164 Sum_probs=53.9
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC---CCcEEEecCChHhHHHHHHHHHhhhcc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG---YSNIFVTAPSPENLKTLFEFVCKGFNA 133 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g---~~nI~VTAPs~enl~tlFef~~kgl~~ 133 (835)
.|.+|.++|.. ...++.|.|+.|.|||++|-.-++.++..+ ..+|+|++++..+++.+-+-+...++.
T Consensus 1 l~~eQ~~~i~~---------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS---------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS----------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC---------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 36788887642 246899999999999999998889888876 358999999999999998888765544
No 98
>PF13245 AAA_19: Part of AAA domain
Probab=96.19 E-value=0.026 Score=49.93 Aligned_cols=50 Identities=26% Similarity=0.317 Sum_probs=40.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCCcEEEecCChHhHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAA---GYSNIFVTAPSPENLKTLFEFV 127 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~---g~~nI~VTAPs~enl~tlFef~ 127 (835)
.+.++|+|+.|.|||+++=-.++.+++. +..+|+|.+|+..++..|.+-+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 3567889999999997766666666643 1468999999999999998776
No 99
>PTZ00424 helicase 45; Provisional
Probab=96.16 E-value=0.023 Score=63.45 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=48.8
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC--CCcEEEecCChHhHHHHHHHHHh
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG--YSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g--~~nI~VTAPs~enl~tlFef~~k 129 (835)
.|.-|.+|+..+.+ + .-+++.|+.|.|||.+.-+++-..+..+ -.+++|-+|+.+=+..+++++..
T Consensus 51 ~~~~Q~~ai~~i~~----~---~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 118 (401)
T PTZ00424 51 PSAIQQRGIKPILD----G---YDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLA 118 (401)
T ss_pred CCHHHHHHHHHHhC----C---CCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHH
Confidence 58899999876643 2 2467999999999987766665555432 34699999999887777766543
No 100
>PRK10689 transcription-repair coupling factor; Provisional
Probab=96.15 E-value=0.022 Score=72.83 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=86.6
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccc
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 135 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lg 135 (835)
..|.+|.+|+..+..-+.. ....-+++.|+.|.|||.+..+++..++..| ..++|-+|+.+-+...++.+.+-+...+
T Consensus 600 ~~T~~Q~~aI~~il~d~~~-~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g-~qvlvLvPT~eLA~Q~~~~f~~~~~~~~ 677 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDMCQ-PLAMDRLVCGDVGFGKTEVAMRAAFLAVENH-KQVAVLVPTTLLAQQHYDNFRDRFANWP 677 (1147)
T ss_pred CCCHHHHHHHHHHHHHhhc-CCCCCEEEEcCCCcCHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHhhccCC
Confidence 5799999999988775543 2234589999999999987766666666656 4799999999998888876654443322
Q ss_pred ccccccceeeecCCC-CCCcce--------eEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhh--c
Q 003262 136 YKEHIDYDIVRSSNP-DLRKPI--------VRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLL--G 204 (835)
Q Consensus 136 y~e~~dy~i~~st~p-~~~~ai--------vrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll--~ 204 (835)
.. ..++.+..+ .-.+.+ +.|- ..+|+ .+ .. ...+...++||||||=.+.......+- .
T Consensus 678 v~----i~~l~g~~s~~e~~~il~~l~~g~~dIV-VgTp~-lL---~~--~v~~~~L~lLVIDEahrfG~~~~e~lk~l~ 746 (1147)
T PRK10689 678 VR----IEMLSRFRSAKEQTQILAEAAEGKIDIL-IGTHK-LL---QS--DVKWKDLGLLIVDEEHRFGVRHKERIKAMR 746 (1147)
T ss_pred ce----EEEEECCCCHHHHHHHHHHHHhCCCCEE-EECHH-HH---hC--CCCHhhCCEEEEechhhcchhHHHHHHhcC
Confidence 11 011111000 000000 0111 12231 11 10 012356899999999888876654442 1
Q ss_pred --CCeEEEEeec
Q 003262 205 --PYLVFLSSTV 214 (835)
Q Consensus 205 --~y~vflsSTi 214 (835)
...++||.|.
T Consensus 747 ~~~qvLl~SATp 758 (1147)
T PRK10689 747 ADVDILTLTATP 758 (1147)
T ss_pred CCCcEEEEcCCC
Confidence 2356678884
No 101
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=96.11 E-value=0.0081 Score=60.15 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=26.2
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
+-|-.+|||||||+.|+|.++|+.+..-..
T Consensus 66 gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar 95 (153)
T COG1246 66 GELRSLAVHPDYRGSGRGERLLERLLADAR 95 (153)
T ss_pred eeEEEEEECHHhcCCCcHHHHHHHHHHHHH
Confidence 567789999999999999999999886554
No 102
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=96.10 E-value=0.022 Score=63.67 Aligned_cols=28 Identities=18% Similarity=0.029 Sum_probs=26.0
Q ss_pred EEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 418 IVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 418 IVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
|-+|||+|+|||+|+|+++|+.|.++..
T Consensus 53 ik~vaV~~~~rG~Glg~~L~~~L~~~a~ 80 (332)
T TIGR00124 53 IKCVAIDESLRGEGLALQLMTELENLAY 80 (332)
T ss_pred EEEEEEcHHHcCCCHHHHHHHHHHHHHH
Confidence 7799999999999999999999998764
No 103
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.09 E-value=0.037 Score=50.61 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 61 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 61 QakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
|.+.+..+...+... ....++|+|++|.|||+++-..+..+...++.-+++..+.
T Consensus 3 ~~~~~~~i~~~~~~~-~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~ 57 (151)
T cd00009 3 QEEAIEALREALELP-PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD 57 (151)
T ss_pred hHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh
Confidence 445555555555442 3458999999999999876555444443354445555443
No 104
>PRK08181 transposase; Validated
Probab=96.05 E-value=0.027 Score=61.15 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 58 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 58 T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
+..|..++...-+-+.+ ...++|+|+.|.|||.++--.+-.++..|++-+|++++
T Consensus 89 ~~~~~~~L~~~~~~~~~---~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~ 143 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAK---GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTT 143 (269)
T ss_pred CHHHHHHHHHHHHHHhc---CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHH
Confidence 44566665433233332 34699999999999987754444566789888899874
No 105
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.04 E-value=0.073 Score=64.69 Aligned_cols=71 Identities=24% Similarity=0.190 Sum_probs=57.2
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhh
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGF 131 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl 131 (835)
..|.+|++|+..+.+.+ .+..++|.|+.|.|||.+.-.++..++..| ..++|-+|+.+-+..+.+.+.+.|
T Consensus 144 ~Lt~~Q~~ai~~i~~~~----~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAA----GFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-KQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCHHHHHHHHHHHhcc----CCCcEEEECCCCChHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHh
Confidence 47899999988776533 235689999999999999888888888877 479999999999888887776544
No 106
>PRK00254 ski2-like helicase; Provisional
Probab=96.03 E-value=0.026 Score=68.70 Aligned_cols=141 Identities=14% Similarity=0.158 Sum_probs=81.4
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEY 136 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy 136 (835)
.+.-|.+|+...+ .++ .-++++|+.|.|||.+--+++...+...-.++++.+|..+-+...++.+.+ +..+|.
T Consensus 24 l~~~Q~~ai~~~~---~~g---~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~-~~~~g~ 96 (720)
T PRK00254 24 LYPPQAEALKSGV---LEG---KNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKD-WEKLGL 96 (720)
T ss_pred CCHHHHHHHHHHH---hCC---CcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHH-HhhcCC
Confidence 4678999986532 222 468999999999999988887765543335788889999988888866543 333332
Q ss_pred cccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccc--------cccCCCcEEEEecccCCCH----HHHHHhhc
Q 003262 137 KEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEH--------EKLAQVELLVIDEAAAIPL----PVVRSLLG 204 (835)
Q Consensus 137 ~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~--------~~l~~adLLvIDEAAAIPl----pllk~Ll~ 204 (835)
+ +...++ ++...... . ....|-...|.-+ ..+...+++||||+=.+.- +.+..++.
T Consensus 97 ~------v~~~~G-d~~~~~~~---~--~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~ 164 (720)
T PRK00254 97 R------VAMTTG-DYDSTDEW---L--GKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILT 164 (720)
T ss_pred E------EEEEeC-CCCCchhh---h--ccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHH
Confidence 2 111111 01000000 0 0011222223221 1134679999999987752 34444442
Q ss_pred -----CCeEEEEeeccC
Q 003262 205 -----PYLVFLSSTVNG 216 (835)
Q Consensus 205 -----~y~vflsSTi~G 216 (835)
+.+|.||.|+.-
T Consensus 165 ~l~~~~qiI~lSATl~n 181 (720)
T PRK00254 165 HMLGRAQILGLSATVGN 181 (720)
T ss_pred hcCcCCcEEEEEccCCC
Confidence 347889999843
No 107
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=96.01 E-value=0.2 Score=47.85 Aligned_cols=68 Identities=21% Similarity=0.211 Sum_probs=48.6
Q ss_pred EeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccCCC
Q 003262 421 IATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQPE 500 (835)
Q Consensus 421 IAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~~~ 500 (835)
+.+.|++| +|||+.+++.+.+|.....
T Consensus 82 ~~~~~~~~-~G~g~~~~~~~~~~a~~~~---------------------------------------------------- 108 (156)
T TIGR03585 82 IYANPFCK-PGVGSVLEEAALEYAFEHL---------------------------------------------------- 108 (156)
T ss_pred EEeChhhh-cCchHHHHHHHHHHHHhhC----------------------------------------------------
Confidence 45899999 9999999999998853110
Q ss_pred CcceEEE-ecCCCHHHHHHHHHCCCeEEEeeecccCCCCCce
Q 003262 501 KLNYIGV-SFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHT 541 (835)
Q Consensus 501 ~lDylGv-SFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS 541 (835)
+++.+-+ ..-.+....+||+|+||..+......-...|.+.
T Consensus 109 ~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~~~~~~~~g~~~ 150 (156)
T TIGR03585 109 GLHKLSLEVLEFNNKALKLYEKFGFEREGVFRQGIFKEGEYY 150 (156)
T ss_pred CeeEEEEEEeccCHHHHHHHHHcCCeEeeeehhheeECCeEE
Confidence 1111111 1334799999999999999998777666667653
No 108
>PRK08116 hypothetical protein; Validated
Probab=95.97 E-value=0.056 Score=58.43 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=38.5
Q ss_pred cHHHHHHHHH---HHHHHhcc-CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 58 TLDQGKAVIT---FLDAILDK-TLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 58 T~DQakAl~~---~~~~i~ek-~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
+..|.+|+.. +++.+.+. .....+.|+|+.|.|||.++...+..++..|++-+|++++.
T Consensus 90 ~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ 152 (268)
T PRK08116 90 DKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQ 152 (268)
T ss_pred ChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 4556555433 33333321 22346999999999999998866566666787777887553
No 109
>PRK02362 ski2-like helicase; Provisional
Probab=95.95 E-value=0.029 Score=68.55 Aligned_cols=65 Identities=26% Similarity=0.194 Sum_probs=51.3
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVC 128 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~ 128 (835)
.+.-|.+|+...+ .++ .-+++.|+.|.|||.+--+++...+..| .++++.+|+.+=+...++...
T Consensus 24 l~p~Q~~ai~~~~---~~g---~nvlv~APTGSGKTlia~lail~~l~~~-~kal~i~P~raLa~q~~~~~~ 88 (737)
T PRK02362 24 LYPPQAEAVEAGL---LDG---KNLLAAIPTASGKTLIAELAMLKAIARG-GKALYIVPLRALASEKFEEFE 88 (737)
T ss_pred CCHHHHHHHHHHH---hCC---CcEEEECCCcchHHHHHHHHHHHHHhcC-CcEEEEeChHHHHHHHHHHHH
Confidence 5688999986532 232 3589999999999999888887777654 479999999999888887654
No 110
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.91 E-value=0.021 Score=67.99 Aligned_cols=66 Identities=23% Similarity=0.182 Sum_probs=50.7
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC---------CCcEEEecCChHhHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG---------YSNIFVTAPSPENLKTLFEFV 127 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g---------~~nI~VTAPs~enl~tlFef~ 127 (835)
.|.-|++++-.+++ + +-+++.|+.|.|||.+.-+.+...+... ...++|.+|+.+=+..+++.+
T Consensus 32 ptpiQ~~~ip~~l~----G---~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~ 104 (572)
T PRK04537 32 CTPIQALTLPVALP----G---GDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDA 104 (572)
T ss_pred CCHHHHHHHHHHhC----C---CCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHH
Confidence 68999999876543 2 3589999999999999888776655321 246999999999988888765
Q ss_pred Hh
Q 003262 128 CK 129 (835)
Q Consensus 128 ~k 129 (835)
.+
T Consensus 105 ~~ 106 (572)
T PRK04537 105 VK 106 (572)
T ss_pred HH
Confidence 44
No 111
>PRK01346 hypothetical protein; Provisional
Probab=95.91 E-value=0.0097 Score=67.10 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=29.2
Q ss_pred CcccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 413 LSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 413 lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.....|..++|||+|||+|+|+++|+.+.+.+.
T Consensus 77 ~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~ 109 (411)
T PRK01346 77 LPAAGVTAVTVAPTHRRRGLLTALMREQLRRIR 109 (411)
T ss_pred cceeEEEEEEEChhhcCCCHHHHHHHHHHHHHH
Confidence 345789999999999999999999999888764
No 112
>PRK06921 hypothetical protein; Provisional
Probab=95.78 E-value=0.037 Score=59.83 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcEEEecC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAA-GYSNIFVTAP 115 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~-g~~nI~VTAP 115 (835)
...++|+|+.|.|||.++--.+..++.. |++-+|+|++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~ 155 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFV 155 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHH
Confidence 4579999999999999885444445555 8888899974
No 113
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=95.76 E-value=0.036 Score=70.68 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=50.4
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHH-HHHHHHHHHHc-CCCcEEEecCChHhHHHHHH
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAA-LGLAIAGAIAA-GYSNIFVTAPSPENLKTLFE 125 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAa-LGlaiA~ai~~-g~~nI~VTAPs~enl~tlFe 125 (835)
...-.-|.+||.++.+++.++.. ..+|..+.|.|||-+ +++ +..++.. +..+|++.+|..+=++...+
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r--~~Ll~maTGSGKT~tai~l-i~~L~~~~~~~rVLfLvDR~~L~~Qa~~ 481 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQR--EILLAMATGTGKTRTAIAL-MYRLLKAKRFRRILFLVDRSALGEQAED 481 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccC--CeEEEeCCCCCHHHHHHHH-HHHHHhcCccCeEEEEecHHHHHHHHHH
Confidence 34567899999999999876542 467789999999955 443 3444544 46799999999887776654
No 114
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.69 E-value=0.021 Score=58.06 Aligned_cols=38 Identities=32% Similarity=0.439 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
..-++|+|+.|+|||.+.--.+-.++..|++-+|+++|
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 34799999999999998765555677889998999875
No 115
>PRK08727 hypothetical protein; Validated
Probab=95.68 E-value=0.055 Score=57.03 Aligned_cols=38 Identities=24% Similarity=0.184 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEec
Q 003262 77 LRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTA 114 (835)
Q Consensus 77 ~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTA 114 (835)
...+++|+|+.|.|||.++--.+..+...|++-+|+++
T Consensus 40 ~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~ 77 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL 77 (233)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH
Confidence 34579999999999999998666667777887788874
No 116
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=95.68 E-value=0.043 Score=65.69 Aligned_cols=118 Identities=19% Similarity=0.221 Sum_probs=64.9
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEY 136 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy 136 (835)
-+.-|.+++..+++ + +-++++|+.|.|||.+-= +.+++..| .++|.+|..+=+....+ .|..+|.
T Consensus 26 ~r~~Q~~ai~~il~----g---~dvlv~apTGsGKTl~y~--lpal~~~g--~tlVisPl~sL~~dqv~----~l~~~gi 90 (607)
T PRK11057 26 FRPGQQEIIDAVLS----G---RDCLVVMPTGGGKSLCYQ--IPALVLDG--LTLVVSPLISLMKDQVD----QLLANGV 90 (607)
T ss_pred CCHHHHHHHHHHHc----C---CCEEEEcCCCchHHHHHH--HHHHHcCC--CEEEEecHHHHHHHHHH----HHHHcCC
Confidence 46789999876543 2 357889999999996532 23333333 57888997765443322 2222332
Q ss_pred cccccceeeecCCC-CCCcceeEeeeeeccceeEEeeCCccccc--------cCCCcEEEEecccCCC
Q 003262 137 KEHIDYDIVRSSNP-DLRKPIVRINIYRQHRQTIQYMEPHEHEK--------LAQVELLVIDEAAAIP 195 (835)
Q Consensus 137 ~e~~dy~i~~st~p-~~~~aivrvni~~~hrq~Iqyi~P~d~~~--------l~~adLLvIDEAAAIP 195 (835)
.- ..+.++.. +....+ ....+..+-.+-|+.|..+.. ....+++|||||=.|+
T Consensus 91 ~~----~~~~s~~~~~~~~~~--~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~ 152 (607)
T PRK11057 91 AA----ACLNSTQTREQQLEV--MAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCIS 152 (607)
T ss_pred cE----EEEcCCCCHHHHHHH--HHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccc
Confidence 11 11112111 000000 000122334577888886531 2357899999999887
No 117
>PRK05642 DNA replication initiation factor; Validated
Probab=95.62 E-value=0.079 Score=55.95 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
.++.|.|++|.|||.++--++..+...|.+-+|+++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 5899999999999999765544455567777888875
No 118
>PRK09401 reverse gyrase; Reviewed
Probab=95.60 E-value=0.067 Score=68.69 Aligned_cols=66 Identities=20% Similarity=0.190 Sum_probs=49.5
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHh
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~k 129 (835)
..|.-|..++-.++. .+-+++.|+.|.|||+ .|+.++..+.....+++|-+|+.+=+..+++.+.+
T Consensus 80 ~pt~iQ~~~i~~il~-------g~dv~i~ApTGsGKT~-f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~ 145 (1176)
T PRK09401 80 KPWSLQRTWAKRLLL-------GESFAIIAPTGVGKTT-FGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEK 145 (1176)
T ss_pred CCcHHHHHHHHHHHC-------CCcEEEEcCCCCCHHH-HHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHH
Confidence 457788887765542 2467899999999996 67766665554446799999999998888776654
No 119
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.53 E-value=0.086 Score=47.45 Aligned_cols=42 Identities=10% Similarity=0.097 Sum_probs=26.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHH
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLK 121 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~ 121 (835)
..+.|+|+.|.|||+++-..+..+-..+ ..++..+++.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~ 44 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEE 44 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEcccc
Confidence 5789999999999998854433322222 24555555544433
No 120
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.46 E-value=0.052 Score=62.75 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=48.3
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC---------CCcEEEecCChHhHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG---------YSNIFVTAPSPENLKTLFEFV 127 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g---------~~nI~VTAPs~enl~tlFef~ 127 (835)
.|.-|++|+-.+. .+ +-++++|+.|.|||.+--+.+...+... -..++|-+|+.+=+...++-+
T Consensus 110 ~~~iQ~~ai~~~~----~G---~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~ 182 (475)
T PRK01297 110 CTPIQAQVLGYTL----AG---HDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDA 182 (475)
T ss_pred CCHHHHHHHHHHh----CC---CCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHH
Confidence 5789999886543 33 3578999999999988877776655432 246899999999888877654
Q ss_pred H
Q 003262 128 C 128 (835)
Q Consensus 128 ~ 128 (835)
.
T Consensus 183 ~ 183 (475)
T PRK01297 183 A 183 (475)
T ss_pred H
Confidence 3
No 121
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=95.43 E-value=0.025 Score=66.80 Aligned_cols=65 Identities=22% Similarity=0.291 Sum_probs=53.2
Q ss_pred ccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHH
Q 003262 54 KKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFE 125 (835)
Q Consensus 54 ~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFe 125 (835)
+.+....|.+|+...+. . +.+..|-|++|.||+.+|-..|.+++..| ++|+|||||..+|..+.|
T Consensus 183 ~~~ln~SQk~Av~~~~~---~---k~l~~I~GPPGTGKT~TlvEiI~qlvk~~-k~VLVcaPSn~AVdNive 247 (649)
T KOG1803|consen 183 NKNLNSSQKAAVSFAIN---N---KDLLIIHGPPGTGKTRTLVEIISQLVKQK-KRVLVCAPSNVAVDNIVE 247 (649)
T ss_pred CccccHHHHHHHHHHhc---c---CCceEeeCCCCCCceeeHHHHHHHHHHcC-CeEEEEcCchHHHHHHHH
Confidence 34555567667643222 2 36889999999999999999999999998 799999999999999998
No 122
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=95.42 E-value=0.02 Score=59.22 Aligned_cols=75 Identities=19% Similarity=0.235 Sum_probs=57.5
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccc
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLR 495 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~ 495 (835)
+-|.-+.|+|+||+.|+||.+|+.+.+|..+... ..
T Consensus 90 ~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~--------------~~------------------------------ 125 (187)
T KOG3138|consen 90 IYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQ--------------CR------------------------------ 125 (187)
T ss_pred eEEEeecccHHHHhcchHHHHHHHHHHHHhcccc--------------cc------------------------------
Confidence 6699999999999999999999999998753220 00
Q ss_pred ccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCce
Q 003262 496 ERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHT 541 (835)
Q Consensus 496 e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS 541 (835)
.-.++-+-+ +...+.||++.||.+|.....++-.+|-+-
T Consensus 126 ---~v~lHv~~~----n~~ai~~Y~~~gF~~~~~~~~~y~~~~~~~ 164 (187)
T KOG3138|consen 126 ---RVYLHVQAV----NESAIEFYEKRGFEIVERLKNYYSILGPPD 164 (187)
T ss_pred ---eEEEEEEeC----CCcHHHHHHhcCceEeeccccccccccCcc
Confidence 012222223 688999999999999999999988776544
No 123
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=95.38 E-value=0.046 Score=52.54 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=45.5
Q ss_pred hhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCCCCCcccEEE
Q 003262 340 MADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIV 419 (835)
Q Consensus 340 L~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~lsgaRIV 419 (835)
|.+.|.++.||..- + .+++|.+++.. +.-+. ++ .-...-|-
T Consensus 42 l~~~~~~~~~v~~~-----d---g~~~g~~~~~~-~~~~~------------------~~------------~~~~~~~~ 82 (152)
T PF13523_consen 42 LEADPGHHPYVAED-----D---GEPIGYFEIYW-PDEDY------------------DA------------DDGDRGIH 82 (152)
T ss_dssp HCHTTTEEEEEEEE-----T---TEEEEEEEEEE-GGGSS---------------------------------TTEEEEE
T ss_pred hcccCCceEEEEEE-----C---CEEEEEEEEec-ccccc------------------cC------------CCCEEEEe
Confidence 33689999998872 2 37888887732 11110 00 11334456
Q ss_pred EEeeCcccccCChHHHHHHHHHHHHh
Q 003262 420 RIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 420 RIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
+++++|+|+|+|+|+.+++.+.++..
T Consensus 83 ~~~~~~~~rg~G~g~~~~~~~~~~~~ 108 (152)
T PF13523_consen 83 RLIVDPEYRGQGLGKAMLRALIEFLF 108 (152)
T ss_dssp EEESTGGGTTSSHHHHHHHHHHHHHH
T ss_pred eeeechhhcCCCHHHHHHHHHHHHHH
Confidence 77999999999999999999998864
No 124
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.37 E-value=0.076 Score=55.69 Aligned_cols=128 Identities=19% Similarity=0.255 Sum_probs=60.3
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-YSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g-~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
.+|..|..++..+.+ ...++++|+-|.|||-+---+++.++..| |.+|++|-|..+.-+.+- |+--
T Consensus 4 p~~~~Q~~~~~al~~-------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lG-flpG----- 70 (205)
T PF02562_consen 4 PKNEEQKFALDALLN-------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLG-FLPG----- 70 (205)
T ss_dssp --SHHHHHHHHHHHH--------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT-----SS-------
T ss_pred CCCHHHHHHHHHHHh-------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccc-cCCC-----
Confidence 379999998877663 35799999999999964332223344444 899999999875422110 1000
Q ss_pred ccccccc------ceeeecC-CCCCCcceeEeeeeeccceeEEeeCCcccc--ccCCCcEEEEecccCCCHHHHHHhhc
Q 003262 135 EYKEHID------YDIVRSS-NPDLRKPIVRINIYRQHRQTIQYMEPHEHE--KLAQVELLVIDEAAAIPLPVVRSLLG 204 (835)
Q Consensus 135 gy~e~~d------y~i~~st-~p~~~~aivrvni~~~hrq~Iqyi~P~d~~--~l~~adLLvIDEAAAIPlpllk~Ll~ 204 (835)
...|..+ |+....- ..+..+.+ -.+..|++.++.-.- .+. -.++|||||==+....++.++-
T Consensus 71 ~~~eK~~p~~~p~~d~l~~~~~~~~~~~~-------~~~~~Ie~~~~~~iRGrt~~-~~~iIvDEaQN~t~~~~k~ilT 141 (205)
T PF02562_consen 71 DLEEKMEPYLRPIYDALEELFGKEKLEEL-------IQNGKIEIEPLAFIRGRTFD-NAFIIVDEAQNLTPEELKMILT 141 (205)
T ss_dssp -------TTTHHHHHHHTTTS-TTCHHHH-------HHTTSEEEEEGGGGTT--B--SEEEEE-SGGG--HHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHhChHhHHHH-------hhcCeEEEEehhhhcCcccc-ceEEEEecccCCCHHHHHHHHc
Confidence 0011100 0000000 00000000 012346665554332 122 3699999999999999999993
No 125
>PTZ00110 helicase; Provisional
Probab=95.36 E-value=0.025 Score=66.88 Aligned_cols=66 Identities=26% Similarity=0.153 Sum_probs=45.4
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHH-HHHc-----C-CCcEEEecCChHhHHHHHHHHHh
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAG-AIAA-----G-YSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~-ai~~-----g-~~nI~VTAPs~enl~tlFef~~k 129 (835)
.|.-|++++-.++. + +-+++.|+.|.|||.+--|.+.. +... + -..++|.+|+.|=+..+++.+.+
T Consensus 153 pt~iQ~~aip~~l~----G---~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~ 225 (545)
T PTZ00110 153 PTPIQVQGWPIALS----G---RDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNK 225 (545)
T ss_pred CCHHHHHHHHHHhc----C---CCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHH
Confidence 57778888765432 2 35789999999999875544332 2221 1 13589999999999888876543
No 126
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=95.32 E-value=0.031 Score=65.54 Aligned_cols=66 Identities=20% Similarity=0.137 Sum_probs=46.8
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-Hc--------CCCcEEEecCChHhHHHHHHH
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI-AA--------GYSNIFVTAPSPENLKTLFEF 126 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai-~~--------g~~nI~VTAPs~enl~tlFef 126 (835)
..|.-|.+|+-.++. + +-++++|+.|.|||.+--+.+-..+ .. ....++|.+|+.+=+..+++.
T Consensus 143 ~ptpiQ~~aip~il~----g---~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~ 215 (518)
T PLN00206 143 FPTPIQMQAIPAALS----G---RSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQ 215 (518)
T ss_pred CCCHHHHHHHHHHhc----C---CCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHH
Confidence 457889999876542 2 3689999999999987666543332 11 123589999999988777766
Q ss_pred HH
Q 003262 127 VC 128 (835)
Q Consensus 127 ~~ 128 (835)
+.
T Consensus 216 ~~ 217 (518)
T PLN00206 216 AK 217 (518)
T ss_pred HH
Confidence 54
No 127
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=95.32 E-value=0.11 Score=52.21 Aligned_cols=64 Identities=25% Similarity=0.264 Sum_probs=43.8
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-c---CCCcEEEecCChHhHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA-A---GYSNIFVTAPSPENLKTLFEFV 127 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~-~---g~~nI~VTAPs~enl~tlFef~ 127 (835)
.+.-|.+|+..+.+ .+-+++.|+.|.|||...=+++...+. . +..+++|.+|+.+-+....+.+
T Consensus 22 ~~~~Q~~~~~~~~~-------~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~ 89 (203)
T cd00268 22 PTPIQARAIPPLLS-------GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVA 89 (203)
T ss_pred CCHHHHHHHHHHhc-------CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHH
Confidence 46689999876654 235799999999999764333333332 2 2346888899988877766554
No 128
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=95.22 E-value=0.056 Score=54.62 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=29.9
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHhccc
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYEGQL 448 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~ 448 (835)
.-|-+.||.++|||+|+|+.+++..+++...+.
T Consensus 85 gyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g 117 (165)
T KOG3139|consen 85 GYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRG 117 (165)
T ss_pred EEEEEEEechhhccccHHHHHHHHHHHHHHHCC
Confidence 689999999999999999999999999986544
No 129
>PRK06526 transposase; Provisional
Probab=95.21 E-value=0.053 Score=58.30 Aligned_cols=38 Identities=29% Similarity=0.278 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
+..++|+|+.|.|||.+.--....++..|++-+|+|++
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~ 135 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA 135 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH
Confidence 34689999999999987654444566678876777665
No 130
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=95.13 E-value=0.053 Score=59.77 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=38.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-cCCCcEEEecCChHhHHHHHHHHHhhh
Q 003262 81 VALLAARGRGKSAALGLAIAGAIA-AGYSNIFVTAPSPENLKTLFEFVCKGF 131 (835)
Q Consensus 81 v~LTA~RGRGKSAaLGlaiA~ai~-~g~~nI~VTAPs~enl~tlFef~~kgl 131 (835)
++|+|+.|.|||.+-=+++...+. ....+|++++|..+-+..+++.+..-|
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f 53 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELF 53 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHh
Confidence 689999999999985554444443 345789999999998888887765544
No 131
>PF13173 AAA_14: AAA domain
Probab=95.09 E-value=0.13 Score=48.81 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENL 120 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl 120 (835)
++.++|+|+||.|||+++=-.+.... ....-++|.--.+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~ 43 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDR 43 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHH
Confidence 45899999999999999977666554 2223467766666653
No 132
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=95.06 E-value=0.025 Score=61.00 Aligned_cols=75 Identities=21% Similarity=0.219 Sum_probs=46.8
Q ss_pred CCCeEEEEEeeecCCCCHHH--HHHHHhcCC----CCCC--CchhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChH
Q 003262 362 LPDILCVIQVCLEGQISRRS--VLKSFSEGH----QPSG--DQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYG 433 (835)
Q Consensus 362 lp~il~viqValEG~is~~~--~~~~l~~G~----Rp~G--dLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyG 433 (835)
+|+++.-.++-.+|.-.++. +.-..+.|+ .-.| ++|.- ++.-.. .-.++||.-..|||+|||+||+
T Consensus 146 i~~~~~~~~l~~~g~~~~~~~~~~~~~a~g~~~~~f~~~d~~iVa~--A~t~a~----~~~~~~I~gV~T~peyR~kGyA 219 (268)
T COG3393 146 IPEVGLRATLDDFGRADSRKEAVAVLNALGRSRTYFLEGDGKIVAK--AETAAE----NPAYAQINGVYTHPEYRGKGYA 219 (268)
T ss_pred chheeeeeeecccccCcchHHHHHHHHHhhceeEEEEccCCcEEEe--eecccc----CCcceEEEEEEcCHHHccccHH
Confidence 46677777777778765543 222222332 2333 33322 222111 2246899999999999999999
Q ss_pred HHHHHHHHH
Q 003262 434 STAVELLTR 442 (835)
Q Consensus 434 sraL~~L~~ 442 (835)
++++..|..
T Consensus 220 t~lva~L~~ 228 (268)
T COG3393 220 TALVATLAA 228 (268)
T ss_pred HHHHHHHHH
Confidence 999988764
No 133
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=95.05 E-value=0.078 Score=42.71 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=40.8
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKL 707 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl 707 (835)
.|++.|+.|+.....+++|+.+||+.+|++...+-.+.+++++++
T Consensus 4 ~L~~~er~vi~~~y~~~~t~~eIa~~lg~s~~~V~~~~~~al~kL 48 (50)
T PF04545_consen 4 QLPPREREVIRLRYFEGLTLEEIAERLGISRSTVRRILKRALKKL 48 (50)
T ss_dssp TS-HHHHHHHHHHHTST-SHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcCCCCHHHHHHHHCCcHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999999886
No 134
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.05 E-value=0.082 Score=60.07 Aligned_cols=65 Identities=23% Similarity=0.109 Sum_probs=48.3
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---------CCCcEEEecCChHhHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA---------GYSNIFVTAPSPENLKTLFEFV 127 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~---------g~~nI~VTAPs~enl~tlFef~ 127 (835)
.|.-|.+|+-.++. + +-+++.|+.|.|||.+--+++...+.. ....++|.+|+.+=+..+++.+
T Consensus 31 pt~iQ~~aip~il~----g---~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~ 103 (423)
T PRK04837 31 CTPIQALALPLTLA----G---RDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADA 103 (423)
T ss_pred CCHHHHHHHHHHhC----C---CcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHH
Confidence 58899999875543 2 358999999999999876666544421 1236999999999998887655
Q ss_pred H
Q 003262 128 C 128 (835)
Q Consensus 128 ~ 128 (835)
.
T Consensus 104 ~ 104 (423)
T PRK04837 104 E 104 (423)
T ss_pred H
Confidence 4
No 135
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.00 E-value=0.046 Score=60.96 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=35.1
Q ss_pred HHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 68 FLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 68 ~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
|++..... ...+.|.|+.|.|||.++--.+..++..|++-+|+|++.
T Consensus 175 f~~~f~~~--~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~ 221 (329)
T PRK06835 175 FIENFDKN--NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADE 221 (329)
T ss_pred HHHHHhcc--CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH
Confidence 55544333 257999999999999977655555777898888999875
No 136
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=94.99 E-value=0.058 Score=69.23 Aligned_cols=68 Identities=19% Similarity=0.154 Sum_probs=50.3
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhh
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGF 131 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl 131 (835)
..|.-|+.++-.++. .+.++++|+.|.|||+ .++.++..++..-..++|-+|+.+-+..+++.+.+-.
T Consensus 78 ~p~~iQ~~~i~~il~-------G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~ 145 (1171)
T TIGR01054 78 EPWSIQKMWAKRVLR-------GDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLA 145 (1171)
T ss_pred CCcHHHHHHHHHHhC-------CCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHH
Confidence 357788887765543 3468899999999997 6676666554433579999999999988887665433
No 137
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=94.98 E-value=0.044 Score=54.61 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=26.3
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
+.|=|.+|.|++||+|+|.++|+...+...
T Consensus 77 ~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~ 106 (155)
T COG2153 77 VSIGRVIVSPAARGQGLGQQLMEKALETAG 106 (155)
T ss_pred eeeeeEEECHhhhccchhHHHHHHHHHHHH
Confidence 559999999999999999999998776654
No 138
>PRK14974 cell division protein FtsY; Provisional
Probab=94.89 E-value=0.24 Score=55.52 Aligned_cols=50 Identities=14% Similarity=0.259 Sum_probs=34.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC--hHhHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS--PENLKTLFEFV 127 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs--~enl~tlFef~ 127 (835)
...++++|..|.||||++.-.+..+...|++=++|++-. ..+...+..++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a 191 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHA 191 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHH
Confidence 458999999999999999987776666676434555432 44555554444
No 139
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=94.88 E-value=0.27 Score=58.80 Aligned_cols=153 Identities=17% Similarity=0.171 Sum_probs=95.0
Q ss_pred cCCcHHHHHHHHHHHHHHhc----------cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcEEEecCChHhHHHH
Q 003262 55 KCSTLDQGKAVITFLDAILD----------KTLRSTVALLAARGRGKSAALGLAIAGAIAA-GYSNIFVTAPSPENLKTL 123 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~e----------k~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~-g~~nI~VTAPs~enl~tl 123 (835)
-++..+=+.-+..++..+.+ .=..+.-|-.-+|--|||--+.-.||.+++. ---+|-.||=-....+.+
T Consensus 169 siklpe~a~r~~~~lk~~Fdi~~~s~~~l~~FKQkaTVFLVPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~V 248 (668)
T PHA03372 169 VTKLPVLANRVLEYLLHVFDIEFLSESSLNIFKQKATVFLVPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFV 248 (668)
T ss_pred hhcCHHHHHHHHHHHHHHcCCcccCHHHHHHhhccceEEEecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHH
Confidence 46666666666666555443 0012344567799999999999999999972 223789999999999998
Q ss_pred HHHHHhhhccccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccccc-C-CCcEEEEecccCCCHHHHHH
Q 003262 124 FEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKL-A-QVELLVIDEAAAIPLPVVRS 201 (835)
Q Consensus 124 Fef~~kgl~~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l-~-~adLLvIDEAAAIPlpllk~ 201 (835)
|+=+..-+... |.. +|. +... ...+-+ .+.+.+.++-|.+=...... | ..+||+||||+=|..+.+..
T Consensus 249 f~EI~~~lrrw-F~~--~~v-i~~k-----~~tI~~-s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~~a~~t 318 (668)
T PHA03372 249 LKEVEFRCRRM-FPR--KHT-IENK-----DNVISI-DHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKKDAFNT 318 (668)
T ss_pred HHHHHHHHhhh-cCc--cce-eeec-----CcEEEE-ecCCCcceeeehhhccCccccCCCCCEEEEehhhccCHHHHHH
Confidence 87765443332 111 111 1110 011111 12344455656442222222 3 48999999999999999999
Q ss_pred hhc------CCeEEEEeeccCC
Q 003262 202 LLG------PYLVFLSSTVNGY 217 (835)
Q Consensus 202 Ll~------~y~vflsSTi~GY 217 (835)
++| .-++|.|||-.|=
T Consensus 319 ilgfm~q~~~KiIfISS~Nsg~ 340 (668)
T PHA03372 319 ILGFLAQNTTKIIFISSTNTTN 340 (668)
T ss_pred hhhhhcccCceEEEEeCCCCCC
Confidence 996 2368888886553
No 140
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=94.87 E-value=0.16 Score=56.91 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHh
Q 003262 61 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 61 QakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~k 129 (835)
|.+++.++.+ +. ...++|+|+.|.|||.+--+++ +. +..+.++.+|..+-+...++-+..
T Consensus 2 Q~~~~~~~~~----~~-~~~~~i~apTGsGKT~~~~~~~---l~-~~~~~~~~~P~~aL~~~~~~~~~~ 61 (357)
T TIGR03158 2 QVATFEALQS----KD-ADIIFNTAPTGAGKTLAWLTPL---LH-GENDTIALYPTNALIEDQTEAIKE 61 (357)
T ss_pred HHHHHHHHHc----CC-CCEEEEECCCCCCHHHHHHHHH---HH-cCCCEEEEeChHHHHHHHHHHHHH
Confidence 7777655433 32 2368999999999998653322 22 234678888998877766554433
No 141
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=94.82 E-value=0.18 Score=62.87 Aligned_cols=137 Identities=23% Similarity=0.386 Sum_probs=86.7
Q ss_pred HHHHHhccCCCcEEEEEcCCCCCHHHHHHHHH-HHHHHc-CCCcEEEecCChHhHHHHHHHHHhhh-cccccccccccee
Q 003262 68 FLDAILDKTLRSTVALLAARGRGKSAALGLAI-AGAIAA-GYSNIFVTAPSPENLKTLFEFVCKGF-NAIEYKEHIDYDI 144 (835)
Q Consensus 68 ~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlai-A~ai~~-g~~nI~VTAPs~enl~tlFef~~kgl-~~lgy~e~~dy~i 144 (835)
++++|.+ +..++|+|..|.|||+-+=..+ ..++.. ++.||++|-|..-++..+-|-+.+.. +.+| +.+.|.|
T Consensus 181 Il~~i~~---~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g--~~VGYqv 255 (924)
T KOG0920|consen 181 ILDAIEE---NQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLG--EEVGYQV 255 (924)
T ss_pred HHHHHHh---CceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccC--CeeeEEE
Confidence 3455555 4589999999999999876555 333333 47899999999999999999986654 2233 3444554
Q ss_pred -eecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccC--CC----HHHHHHhh--cCC--eEEEEee
Q 003262 145 -VRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAA--IP----LPVVRSLL--GPY--LVFLSST 213 (835)
Q Consensus 145 -~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAA--IP----lpllk~Ll--~~y--~vflsST 213 (835)
.++..+. . .+-.|.+-+--+++++++- .+...-.+||||.-= |+ |-+||.++ .|. ++.||-|
T Consensus 256 rl~~~~s~--~---t~L~fcTtGvLLr~L~~~~--~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT 328 (924)
T KOG0920|consen 256 RLESKRSR--E---TRLLFCTTGVLLRRLQSDP--TLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSAT 328 (924)
T ss_pred eeecccCC--c---eeEEEecHHHHHHHhccCc--ccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeee
Confidence 2332221 1 2223444343455555532 234566799999853 44 34566666 344 5789999
Q ss_pred ccC
Q 003262 214 VNG 216 (835)
Q Consensus 214 i~G 216 (835)
++-
T Consensus 329 ~da 331 (924)
T KOG0920|consen 329 LDA 331 (924)
T ss_pred cch
Confidence 995
No 142
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.81 E-value=0.066 Score=59.08 Aligned_cols=41 Identities=32% Similarity=0.461 Sum_probs=36.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENL 120 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl 120 (835)
..-++|+|+||.|||.+|--+++.|...|. |++.-|+..+.
T Consensus 23 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~~w--iVl~vp~a~~~ 63 (309)
T PF10236_consen 23 NNRYVLTGERGSGKSVLLAQAVHYARENGW--IVLYVPSAQDW 63 (309)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCE--EEEEcCCHHHH
Confidence 446899999999999999999998888764 99999998874
No 143
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=94.80 E-value=0.15 Score=52.01 Aligned_cols=91 Identities=13% Similarity=0.041 Sum_probs=69.2
Q ss_pred CCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCC
Q 003262 408 AVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNL 487 (835)
Q Consensus 408 ~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ 487 (835)
..++.+.+.-...|=+||+.||+|+|+++|+.|+++.+.+..
T Consensus 74 r~r~ay~~tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~-------------------------------------- 115 (169)
T COG1247 74 RERPAYRHTVELSIYLDPAARGKGLGKKLLQALITEARALGV-------------------------------------- 115 (169)
T ss_pred cCccccceEEEEEEEECcccccccHHHHHHHHHHHHHHhCCe--------------------------------------
Confidence 456778889999999999999999999999999988753321
Q ss_pred CcccccccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCC--CceEEEEccCCc
Q 003262 488 PPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTG--EHTCMVLKPLHS 550 (835)
Q Consensus 488 ppLl~~l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TG--EhS~IMlr~L~~ 550 (835)
-..++.=|.-+..=++|-++.||.-+..-...++.-| =..|+|=+.|+.
T Consensus 116 --------------~~lva~I~~~n~aSi~lh~~~GF~~~G~~~~vg~k~g~wld~~~~~~~l~~ 166 (169)
T COG1247 116 --------------RELVAGIESDNLASIALHEKLGFEEVGTFPEVGDKFGRWLDLVLMQLLLEE 166 (169)
T ss_pred --------------EEEEEEEcCCCcHhHHHHHHCCCEEeccccccccccceEEeeeeeehhhcc
Confidence 0123344444667789999999999998888877777 346677676654
No 144
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.78 E-value=0.26 Score=53.56 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 63 KAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 63 kAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
.....+...+..++....+.++|++|.|||++.-.. +.. .|..-+.+.+..
T Consensus 28 ~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l-~~~--~~~~~~~i~~~~ 78 (316)
T PHA02544 28 ADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKAL-CNE--VGAEVLFVNGSD 78 (316)
T ss_pred HHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHH-HHH--hCccceEeccCc
Confidence 334444454556666667777999999999975432 322 244345555544
No 145
>PRK09183 transposase/IS protein; Provisional
Probab=94.77 E-value=0.12 Score=55.64 Aligned_cols=38 Identities=29% Similarity=0.282 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
...++|+|+.|.|||++.-.....+...|++-.|++++
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~ 139 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA 139 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH
Confidence 35789999999999998765555566778766688755
No 146
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.76 E-value=0.17 Score=60.75 Aligned_cols=301 Identities=19% Similarity=0.253 Sum_probs=160.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc---EEEecCChHhHHHHHHHHHhhhcc-ccccccccceeeecCCCCCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSN---IFVTAPSPENLKTLFEFVCKGFNA-IEYKEHIDYDIVRSSNPDLR 153 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~n---I~VTAPs~enl~tlFef~~kgl~~-lgy~e~~dy~i~~st~p~~~ 153 (835)
+.+|+|.|..|.|||+-|- ..+..-||.+ |-+|-|..-+.-++-.-+...+.. || ..+.|.|-..
T Consensus 371 n~vvvivgETGSGKTTQl~---QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG--~~VGYsIRFE------ 439 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLA---QYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLG--DTVGYSIRFE------ 439 (1042)
T ss_pred CcEEEEEecCCCCchhhhH---HHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccc--cccceEEEee------
Confidence 5699999999999999883 3355567754 899999999998888777665521 12 2233433211
Q ss_pred cceeEeeeeeccceeEEeeCCcccc-------ccCCCcEEEEecccC------CCHHHHHHhhcCC----eEEEEeeccC
Q 003262 154 KPIVRINIYRQHRQTIQYMEPHEHE-------KLAQVELLVIDEAAA------IPLPVVRSLLGPY----LVFLSSTVNG 216 (835)
Q Consensus 154 ~aivrvni~~~hrq~Iqyi~P~d~~-------~l~~adLLvIDEAAA------IPlpllk~Ll~~y----~vflsSTi~G 216 (835)
-.....-.|.|+.-.=+. .|....++|+|||-- |-+-+||..+... ++++|.|++-
T Consensus 440 -------dvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a 512 (1042)
T KOG0924|consen 440 -------DVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDA 512 (1042)
T ss_pred -------ecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccH
Confidence 001122347888755442 245688999999964 4445566666432 6778999873
Q ss_pred CcccCCchhHHHHHHhhhcCCCCCCCcCCCccCCc--eeEEEeccccccCCCCchHHHHHHhcCCCCCCCCCCC----CC
Q 003262 217 YEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCL--FKKIELSESIRYAPGDPIESWLNGLLCLDVMNSIPHI----NR 290 (835)
Q Consensus 217 YEGTGR~fsLKl~~~L~~~~~~~~~~~~~~~~~r~--~~ei~L~ePIRya~gDPvE~WLn~lLcLDa~~~~~~~----~~ 290 (835)
-||....- ..++. .--||+ ..-+...+|. .|-||+-+-+.+-.--..++..+ .|
T Consensus 513 ---------~kf~nfFg-n~p~f------~IpGRTyPV~~~~~k~p~----eDYVeaavkq~v~Ihl~~~~GdilIfmtG 572 (1042)
T KOG0924|consen 513 ---------QKFSNFFG-NCPQF------TIPGRTYPVEIMYTKTPV----EDYVEAAVKQAVQIHLSGPPGDILIFMTG 572 (1042)
T ss_pred ---------HHHHHHhC-CCcee------eecCCccceEEEeccCch----HHHHHHHHhhheEeeccCCCCCEEEecCC
Confidence 34444432 11100 001232 2333444443 46666666666543322211111 12
Q ss_pred CCCCCCcceEeeCcccccccCcCcHHHHHHHH----HHHHhcccCCChhHHH-Hhhc-CCCceE-EEEecCCcccCCCCC
Q 003262 291 LPPPSECDLYYVNRDTLFSYHKESELFLQRMM----ALYVSSHYKNSPNDLQ-LMAD-APAHHL-FVLLGPVDESKNQLP 363 (835)
Q Consensus 291 ~p~p~~c~l~~Vnrd~Lfs~h~~sE~fLq~~~----aLlV~AHYkNsPnDLq-lL~D-aPah~l-fvL~~p~~~~~~~lp 363 (835)
. .+-+|... ...|.+.|-.. .|-|.--|--=|.||| .+-+ +|.-.= .++...+.+..-++|
T Consensus 573 q-ediE~t~~-----------~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~ 640 (1042)
T KOG0924|consen 573 Q-EDIECTCD-----------IIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIP 640 (1042)
T ss_pred C-cchhHHHH-----------HHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeec
Confidence 1 12222111 01233333222 3556667888999999 3333 554332 333344556666789
Q ss_pred CeEEEEEeee---------cC-------CCCHHHHHHHHhc-CCCCCCCchhHHHH-H-hhccCCCCCCcccEEEEEeeC
Q 003262 364 DILCVIQVCL---------EG-------QISRRSVLKSFSE-GHQPSGDQIPWKFS-E-QFRDAVFPSLSGARIVRIATH 424 (835)
Q Consensus 364 ~il~viqVal---------EG-------~is~~~~~~~l~~-G~Rp~GdLIPw~ls-~-q~~d~~f~~lsgaRIVRIAvh 424 (835)
.|.|||-.-. -| .||+..+.+--.| ||-..|- -+.+- + .|-++-+ -++-
T Consensus 641 gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~--cYRlYTe~ay~~eml----------~stv 708 (1042)
T KOG0924|consen 641 GIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGT--CYRLYTEDAYKNEML----------PSTV 708 (1042)
T ss_pred ceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcc--eeeehhhhHHHhhcc----------cCCC
Confidence 9999985432 12 4666544321111 2222232 22221 1 2223222 2688
Q ss_pred cccccCChHHHHHHHH
Q 003262 425 PSAMRLGYGSTAVELL 440 (835)
Q Consensus 425 Pd~q~mGyGsraL~~L 440 (835)
|+.||-.++.-.|.++
T Consensus 709 PEIqRTNl~nvVLlLk 724 (1042)
T KOG0924|consen 709 PEIQRTNLSNVVLLLK 724 (1042)
T ss_pred chhhhcchhhHHHHHH
Confidence 9999999998877654
No 147
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.70 E-value=0.27 Score=53.06 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.5
Q ss_pred cEEEEEcCCCCCHHHHHH
Q 003262 79 STVALLAARGRGKSAALG 96 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLG 96 (835)
..++|+|++|.|||+++=
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 468999999999998764
No 148
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.67 E-value=0.28 Score=54.11 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=31.5
Q ss_pred CcHHHHHHHHHHHHHHhc-cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCh
Q 003262 57 STLDQGKAVITFLDAILD-KTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP 117 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~e-k~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~ 117 (835)
-..+..+.+..++..... +.....++|+|++|.|||+++=. +|.. .|..-+++.+|..
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~-ia~~--l~~~~~~~~~~~~ 87 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANI-IANE--MGVNIRITSGPAL 87 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHH-HHHH--hCCCeEEEecccc
Confidence 333444444444443322 23234789999999999997753 3333 2433334445543
No 149
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=94.62 E-value=0.046 Score=53.94 Aligned_cols=64 Identities=13% Similarity=0.067 Sum_probs=47.8
Q ss_pred CCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCCCCCcccEEEEEee
Q 003262 344 PAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIAT 423 (835)
Q Consensus 344 Pah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~lsgaRIVRIAv 423 (835)
+.+.+.|+..+ . ..+|+|.+-+..|-.+=... -+.-||-.++|
T Consensus 51 ~~Y~i~Vied~---~---s~~vigtatL~IE~KfIh~~-------------------------------g~rGhiEDVVV 93 (150)
T KOG3396|consen 51 DWYYIVVIEDK---E---SEKVIGTATLFIERKFIHGC-------------------------------GSRGHIEDVVV 93 (150)
T ss_pred CcEEEEEEEeC---C---cCeEEEEEEEEEehhhhhcc-------------------------------cccCceeEEEe
Confidence 33888888743 2 24799999998885432211 13358999999
Q ss_pred CcccccCChHHHHHHHHHHHH
Q 003262 424 HPSAMRLGYGSTAVELLTRYY 444 (835)
Q Consensus 424 hPd~q~mGyGsraL~~L~~~~ 444 (835)
|++|||+|+|..+++.|.+..
T Consensus 94 ~~~~rgk~LGkllv~~Lv~l~ 114 (150)
T KOG3396|consen 94 DSEYRGKQLGKLLVETLVDLA 114 (150)
T ss_pred ChhhhhhHHhHHHHHHHHHHH
Confidence 999999999999999998754
No 150
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.59 E-value=0.13 Score=59.35 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=47.4
Q ss_pred CcEEEEEcCCCCCHH-HHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCcce
Q 003262 78 RSTVALLAARGRGKS-AALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPI 156 (835)
Q Consensus 78 r~~v~LTA~RGRGKS-AaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~ai 156 (835)
+.-+++.|+||.||| -+.+++..+++..| ..-++..||.-+..+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---------~f~T~a~Lf~~L~~~-------------------------- 253 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---------GTITVAKLFYNISTR-------------------------- 253 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---------CcCcHHHHHHHHHHH--------------------------
Confidence 357899999999999 56666776666666 222344555443321
Q ss_pred eEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHh
Q 003262 157 VRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSL 202 (835)
Q Consensus 157 vrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~L 202 (835)
....+..+|+|||||.+-+|..--+.+
T Consensus 254 -------------------~lg~v~~~DlLI~DEvgylp~~~~~~~ 280 (449)
T TIGR02688 254 -------------------QIGLVGRWDVVAFDEVATLKFAKPKEL 280 (449)
T ss_pred -------------------HHhhhccCCEEEEEcCCCCcCCchHHH
Confidence 011245789999999999998755544
No 151
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.54 E-value=0.32 Score=57.27 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA 104 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~ 104 (835)
.|..++.++..++..++....+.++|+||.|||++. .++|.++.
T Consensus 17 GQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~A-rilAk~Ln 60 (491)
T PRK14964 17 GQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCA-RIISLCLN 60 (491)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHH-HHHHHHHc
Confidence 467777778888888888778999999999999954 33455443
No 152
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=94.45 E-value=0.12 Score=48.18 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=25.6
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHH
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYY 444 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~ 444 (835)
.+. +.+.++|+|+|+|||++++.++.+|+
T Consensus 84 ~~e-ig~~i~~~~~g~G~~~~~~~~~~~~~ 112 (142)
T PF13302_consen 84 WAE-IGYWIGPDYRGKGYGTEALKLLLDWA 112 (142)
T ss_dssp EEE-EEEEEEGGGTTSSHHHHHHHHHHHHH
T ss_pred ccc-cccchhHHHHhhhHHHHHHHHHHHHH
Confidence 345 45999999999999999999999998
No 153
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.43 E-value=0.39 Score=55.69 Aligned_cols=118 Identities=17% Similarity=0.227 Sum_probs=64.2
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEY 136 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy 136 (835)
-+.-|.+|+..+++ + +-+++.|+.|.|||.+--+ ..+... ...+|.+|..+=+...++. |..+|.
T Consensus 12 ~r~~Q~~ai~~~l~----g---~dvlv~apTGsGKTl~y~l--p~l~~~--~~~lVi~P~~~L~~dq~~~----l~~~gi 76 (470)
T TIGR00614 12 FRPVQLEVINAVLL----G---RDCFVVMPTGGGKSLCYQL--PALCSD--GITLVISPLISLMEDQVLQ----LKASGI 76 (470)
T ss_pred CCHHHHHHHHHHHc----C---CCEEEEcCCCCcHhHHHHH--HHHHcC--CcEEEEecHHHHHHHHHHH----HHHcCC
Confidence 46789999876643 2 2578999999999976433 223322 3478889998765544333 223332
Q ss_pred cccccceeeecCCC-CCCcceeEeeeeeccceeEEeeCCcccc----------ccCCCcEEEEecccCCC
Q 003262 137 KEHIDYDIVRSSNP-DLRKPIVRINIYRQHRQTIQYMEPHEHE----------KLAQVELLVIDEAAAIP 195 (835)
Q Consensus 137 ~e~~dy~i~~st~p-~~~~aivrvni~~~hrq~Iqyi~P~d~~----------~l~~adLLvIDEAAAIP 195 (835)
.- ..+.+... +..+.+.. . .+...-.|-|+.|+.+. .....+++|||||=.|.
T Consensus 77 ~~----~~l~~~~~~~~~~~i~~-~-~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~ 140 (470)
T TIGR00614 77 PA----TFLNSSQSKEQQKNVLT-D-LKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCIS 140 (470)
T ss_pred cE----EEEeCCCCHHHHHHHHH-H-HhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccC
Confidence 21 11111110 00000000 0 01122346677776532 23568999999999884
No 154
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=94.39 E-value=0.12 Score=42.04 Aligned_cols=45 Identities=20% Similarity=0.218 Sum_probs=37.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKL 707 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl 707 (835)
.|++.++.++...-+++.|+.+||+.+|++.+.+...+.++.+++
T Consensus 10 ~L~~~~r~i~~l~~~~g~s~~eIa~~l~~s~~~v~~~l~ra~~~L 54 (54)
T PF08281_consen 10 QLPERQREIFLLRYFQGMSYAEIAEILGISESTVKRRLRRARKKL 54 (54)
T ss_dssp CS-HHHHHHHHHHHTS---HHHHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHCcCHHHHHHHHHHHHhhC
Confidence 588999999999999999999999999999999999999998875
No 155
>PHA01807 hypothetical protein
Probab=94.39 E-value=0.069 Score=53.36 Aligned_cols=30 Identities=13% Similarity=0.037 Sum_probs=26.0
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHHHHhc
Q 003262 417 RIVRIATHPSAMRLGYGSTAVELLTRYYEG 446 (835)
Q Consensus 417 RIVRIAvhPd~q~mGyGsraL~~L~~~~~g 446 (835)
-|.+|.|+|+|||+|+|++||+.+.++...
T Consensus 83 ~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~ 112 (153)
T PHA01807 83 GVQWQYVLPEYRNAGVAREFLRELIRLAGE 112 (153)
T ss_pred cceeEEECHHHcCCCHHHHHHHHHHHHHHH
Confidence 456789999999999999999999988653
No 156
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.32 E-value=0.63 Score=52.35 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGL 97 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGl 97 (835)
.|.+++..+..++..++....++++|+||.|||++.=.
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARL 57 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHH
Confidence 68888888999888887777789999999999986643
No 157
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.28 E-value=0.25 Score=53.78 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGY 107 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~ 107 (835)
..++|+|++|+|||++.-..+..+...|+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 37999999999999866443333444554
No 158
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.27 E-value=0.34 Score=57.20 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGL 97 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGl 97 (835)
.|..++.++..++..++....++++|+||.|||++.-+
T Consensus 20 Gq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~ 57 (509)
T PRK14958 20 GQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRI 57 (509)
T ss_pred CCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHH
Confidence 58888888889888888877789999999999986543
No 159
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.27 E-value=0.18 Score=57.49 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=24.0
Q ss_pred HHHHHHHH---HHHHHhccCCCcEEEEEcCCCCCHHHHHHH
Q 003262 60 DQGKAVIT---FLDAILDKTLRSTVALLAARGRGKSAALGL 97 (835)
Q Consensus 60 DQakAl~~---~~~~i~ek~~r~~v~LTA~RGRGKSAaLGl 97 (835)
.|.+.+.. +...+..+.. ..++|+|++|.|||++.-.
T Consensus 16 Gq~~~v~~~~~L~~~i~~~~~-~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 16 GQEHLLGPGKPLRRMIEAGRL-SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred CcHHHhCcchHHHHHHHcCCC-ceEEEECCCCCCHHHHHHH
Confidence 35554433 4444444443 4789999999999987643
No 160
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=94.23 E-value=0.2 Score=59.64 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=65.9
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEY 136 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy 136 (835)
-+..|.+|+..+++ + .-+++.|+.|.|||.+-= +.+++..| ..+|.+|..+-++.-.+. |..+|.
T Consensus 14 fr~~Q~~~i~~il~----g---~dvlv~~PTG~GKTl~y~--lpal~~~g--~~lVisPl~sL~~dq~~~----l~~~gi 78 (591)
T TIGR01389 14 FRPGQEEIISHVLD----G---RDVLVVMPTGGGKSLCYQ--VPALLLKG--LTVVISPLISLMKDQVDQ----LRAAGV 78 (591)
T ss_pred CCHHHHHHHHHHHc----C---CCEEEEcCCCccHhHHHH--HHHHHcCC--cEEEEcCCHHHHHHHHHH----HHHcCC
Confidence 46789998876543 3 247899999999998752 33344434 467779998776654432 233332
Q ss_pred cccccceeeecCCC-CCCcceeEeeeeeccceeEEeeCCccccc--------cCCCcEEEEecccCCC
Q 003262 137 KEHIDYDIVRSSNP-DLRKPIVRINIYRQHRQTIQYMEPHEHEK--------LAQVELLVIDEAAAIP 195 (835)
Q Consensus 137 ~e~~dy~i~~st~p-~~~~aivrvni~~~hrq~Iqyi~P~d~~~--------l~~adLLvIDEAAAIP 195 (835)
.- . .+.|... +-...+. .-.....-.|-|+.|+.+.. ....+++|||||=.|+
T Consensus 79 ~~--~--~~~s~~~~~~~~~~~--~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~ 140 (591)
T TIGR01389 79 AA--A--YLNSTLSAKEQQDIE--KALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVS 140 (591)
T ss_pred cE--E--EEeCCCCHHHHHHHH--HHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccc
Confidence 11 0 0111100 0000000 00011233577888876531 2457899999999986
No 161
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=94.22 E-value=0.25 Score=60.78 Aligned_cols=64 Identities=20% Similarity=0.170 Sum_probs=49.0
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCcEEEecCChHhHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-YSNIFVTAPSPENLKTLFEFV 127 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g-~~nI~VTAPs~enl~tlFef~ 127 (835)
.|.-|++|+..+. ++ +-++++|+.|.|||.+-.|.+-..+..+ ...++|-+|+.+=+...++-+
T Consensus 37 p~~~Q~~ai~~il----~G---~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l 101 (742)
T TIGR03817 37 PWQHQARAAELAH----AG---RHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAV 101 (742)
T ss_pred CCHHHHHHHHHHH----CC---CCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHH
Confidence 6889999987553 33 3589999999999999988877766543 347888999998776666543
No 162
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.22 E-value=0.57 Score=56.93 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
.|.+++.++.+++..++....++++|+||.||+++.-+ +|..+
T Consensus 20 GQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAri-LAkaL 62 (700)
T PRK12323 20 GQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRI-LAKSL 62 (700)
T ss_pred CcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHH-HHHHh
Confidence 57888888889998888888889999999999986644 44444
No 163
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.20 E-value=0.27 Score=57.62 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLA 98 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGla 98 (835)
.|..++.++..++..++....++++|+||.|||++.-+.
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 588888888888888876667899999999999976443
No 164
>PRK06893 DNA replication initiation factor; Validated
Probab=94.05 E-value=0.28 Score=51.57 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=29.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEec
Q 003262 80 TVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTA 114 (835)
Q Consensus 80 ~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTA 114 (835)
.+.|.|+.|.|||.++-..+..+...|.+-+|+++
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 47999999999999997766667777777788886
No 165
>PRK13767 ATP-dependent helicase; Provisional
Probab=94.03 E-value=0.14 Score=64.04 Aligned_cols=63 Identities=21% Similarity=0.149 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-C-------CCcEEEecCChHhHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA-G-------YSNIFVTAPSPENLKTLFEF 126 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~-g-------~~nI~VTAPs~enl~tlFef 126 (835)
.|.-|.+|+..+. ++ .-++|+|+.|.|||.+--+++...+.. + ...+++.+|..+=+..+++-
T Consensus 33 ~tpiQ~~Ai~~il----~g---~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~ 103 (876)
T PRK13767 33 FTPPQRYAIPLIH----EG---KNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRN 103 (876)
T ss_pred CCHHHHHHHHHHH----cC---CCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHH
Confidence 7899999987543 32 357899999999999887776554421 1 12488888998877766653
No 166
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.97 E-value=0.38 Score=60.12 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGL 97 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGl 97 (835)
.|.+++.+|.+++..++....++++|+||.|||++.=+
T Consensus 20 GQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARi 57 (944)
T PRK14949 20 GQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARL 57 (944)
T ss_pred CcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHH
Confidence 68888888889998888877789999999999997643
No 167
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.97 E-value=0.45 Score=58.03 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALG 96 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLG 96 (835)
.|.+++..+..++..++....++++|+||.|||++.=
T Consensus 20 GQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAr 56 (709)
T PRK08691 20 GQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIAR 56 (709)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHH
Confidence 5788888888888888877789999999999998653
No 168
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=93.93 E-value=0.07 Score=53.85 Aligned_cols=85 Identities=16% Similarity=0.218 Sum_probs=59.5
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccc
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLR 495 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~ 495 (835)
..|.-++|.|+|||.|+|+++++.|++--+-+.... -...+|++
T Consensus 70 ~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~f---------vDLfVr~s--------------------------- 113 (173)
T KOG3234|consen 70 GHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYF---------VDLFVRVS--------------------------- 113 (173)
T ss_pred eEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhhe---------eeeeeecc---------------------------
Confidence 579999999999999999999999887532210000 01122222
Q ss_pred ccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCC-CCCceEEEEccCCccc
Q 003262 496 ERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAV-TGEHTCMVLKPLHSED 552 (835)
Q Consensus 496 e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~-TGEhS~IMlr~L~~~~ 552 (835)
+.-.+.||++.||+.-+---.++.. .-||+.=|-|+|+.+-
T Consensus 114 ----------------N~iAI~mYkkLGY~~YR~Vi~YY~~g~deda~dMRKalSrD~ 155 (173)
T KOG3234|consen 114 ----------------NQIAIDMYKKLGYSVYRTVIEYYSVGPDEDAYDMRKALSRDV 155 (173)
T ss_pred ----------------chhHHHHHHhcCceEEEeeeeeeccCCCcchHhhhhhhccCc
Confidence 5778999999999876555555432 2489999999998653
No 169
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.89 E-value=0.24 Score=56.33 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcE-EEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAI-AAGYSNI-FVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai-~~g~~nI-~VTAPs 116 (835)
...++|.|+.|.|||+++...++.++ .+|+.+| +||+-+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~ 177 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDS 177 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 45899999999999999988877765 4576565 565544
No 170
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.80 E-value=0.84 Score=54.12 Aligned_cols=154 Identities=18% Similarity=0.123 Sum_probs=93.5
Q ss_pred CcHHHHHHHHHHHHHHhccCCC---cEEEEEcCCCCCHHHHHH-HHHHHHHH--cCCCcEEEecCChHhHHHHHHHHHhh
Q 003262 57 STLDQGKAVITFLDAILDKTLR---STVALLAARGRGKSAALG-LAIAGAIA--AGYSNIFVTAPSPENLKTLFEFVCKG 130 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r---~~v~LTA~RGRGKSAaLG-laiA~ai~--~g~~nI~VTAPs~enl~tlFef~~kg 130 (835)
..+-|.=.+..+.=..-..|.. +...|.=+||-|||+++- |+.+..+- .+-..|+|.|||.+-..++|.++.--
T Consensus 62 l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~m 141 (546)
T COG4626 62 LEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARDM 141 (546)
T ss_pred cchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHHH
Confidence 3445666555554322223322 267888999999999875 55555442 23357999999999999999998654
Q ss_pred hccccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccc-cCCCcEEEEecccCCCHH--HHHHhhc---
Q 003262 131 FNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEK-LAQVELLVIDEAAAIPLP--VVRSLLG--- 204 (835)
Q Consensus 131 l~~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~-l~~adLLvIDEAAAIPlp--llk~Ll~--- 204 (835)
+.... +..+...-+ -++ +..+++.....|.+++-+.-.. -..+-+.||||-=..+-+ ++..+.+
T Consensus 142 v~~~~-----~l~~~~~~q--~~s---~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~~~~~~~~~g~~ 211 (546)
T COG4626 142 VKRDD-----DLRDLCNVQ--THS---RTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQEDMYSEAKGGLG 211 (546)
T ss_pred HHhCc-----chhhhhccc--cce---eEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHHHHHHHHHhhhc
Confidence 43322 111110000 011 1234555566788887765422 235778999999988885 5554442
Q ss_pred CC---eEEEEeeccCCcccC
Q 003262 205 PY---LVFLSSTVNGYEGTG 221 (835)
Q Consensus 205 ~y---~vflsSTi~GYEGTG 221 (835)
.+ ++|.-|| .||--.|
T Consensus 212 ar~~~l~~~ITT-~g~~~~g 230 (546)
T COG4626 212 ARPEGLVVYITT-SGDPPAG 230 (546)
T ss_pred cCcCceEEEEec-CCCCCcc
Confidence 33 6766666 8886665
No 171
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.78 E-value=0.69 Score=57.69 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
.|.+++..|..++..++....+++.|.+|.||+++.=+ +|..+
T Consensus 19 Gqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~-lAr~L 61 (824)
T PRK07764 19 GQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARI-LARSL 61 (824)
T ss_pred CcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHH-HHHHh
Confidence 46677777778887777777789999999999986543 44444
No 172
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=93.74 E-value=0.07 Score=43.91 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=23.6
Q ss_pred EeeCcccccCChHHHHHHHHHHHHhc
Q 003262 421 IATHPSAMRLGYGSTAVELLTRYYEG 446 (835)
Q Consensus 421 IAvhPd~q~mGyGsraL~~L~~~~~g 446 (835)
++|+|+|||+|+|+++++.+.++...
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~ 112 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARK 112 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHH
Confidence 99999999999999999988887653
No 173
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.73 E-value=0.51 Score=50.77 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG 106 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g 106 (835)
.|..++..+...+..++. ..++|+|++|.|||+++-..+..+...+
T Consensus 21 g~~~~~~~l~~~i~~~~~-~~~ll~G~~G~GKt~~~~~l~~~l~~~~ 66 (319)
T PRK00440 21 GQEEIVERLKSYVKEKNM-PHLLFAGPPGTGKTTAALALARELYGED 66 (319)
T ss_pred CcHHHHHHHHHHHhCCCC-CeEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 355566666666655543 3689999999999998876555443333
No 174
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.60 E-value=0.31 Score=56.58 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
.++.|+|+.|.|||.++-..+..+...|..=++|++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 5899999999999998875444455567766788865
No 175
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.45 E-value=0.21 Score=62.39 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA 105 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~ 105 (835)
.|.+-|..+++.+..++. .-++|+|+.|.|||++. -++|..+..
T Consensus 182 gr~~ei~~~i~iL~r~~~-~n~lL~G~pGvGKT~l~-~~la~~i~~ 225 (857)
T PRK10865 182 GRDEEIRRTIQVLQRRTK-NNPVLIGEPGVGKTAIV-EGLAQRIIN 225 (857)
T ss_pred CCHHHHHHHHHHHhcCCc-CceEEECCCCCCHHHHH-HHHHHHhhc
Confidence 355567888887666554 45679999999999987 345555544
No 176
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.42 E-value=0.47 Score=55.12 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
...++++|..|.|||++.+-.++.+...|++-.+|++..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 457899999999999999877777767787555666654
No 177
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.39 E-value=0.85 Score=54.85 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
.|.+++.++..++..++....++++|+||.||+++.= ++|..+
T Consensus 17 Gq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~-~lAk~l 59 (584)
T PRK14952 17 GQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSAR-ILARSL 59 (584)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHH-HHHHHh
Confidence 4888888888888888777778999999999998653 344444
No 178
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.38 E-value=0.69 Score=56.29 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAAL 95 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaL 95 (835)
.|.+++.++..++..++....++++|+||.|||++.
T Consensus 19 GQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlA 54 (702)
T PRK14960 19 GQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIA 54 (702)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 578888888888888887778899999999999865
No 179
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.38 E-value=1.1 Score=49.38 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
.|.+++..+...+..++....++++|++|.|||++.= ++|..+
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~-~la~~l 60 (355)
T TIGR02397 18 GQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIAR-IFAKAL 60 (355)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHH-HHHHHh
Confidence 5777777888888887776678999999999998764 344443
No 180
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=93.34 E-value=0.68 Score=53.64 Aligned_cols=145 Identities=20% Similarity=0.221 Sum_probs=82.8
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccc
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 135 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lg 135 (835)
-.-.-|.+|+.++...... .+..+|.++.|.|||-. |+.+ ++.-..+++|-+|+.+-+..-.+...+.+..-
T Consensus 36 ~lr~yQ~~al~a~~~~~~~---~~~gvivlpTGaGKT~v-a~~~---~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~- 107 (442)
T COG1061 36 ELRPYQEEALDALVKNRRT---ERRGVIVLPTGAGKTVV-AAEA---IAELKRSTLVLVPTKELLDQWAEALKKFLLLN- 107 (442)
T ss_pred CCcHHHHHHHHHHHhhccc---CCceEEEeCCCCCHHHH-HHHH---HHHhcCCEEEEECcHHHHHHHHHHHHHhcCCc-
Confidence 3567899999999886554 34568899999999864 3333 33334569999999999888766555444321
Q ss_pred ccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccc-cC-CCcEEEEecccCCCHHHHHHhh----cCC-eE
Q 003262 136 YKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEK-LA-QVELLVIDEAAAIPLPVVRSLL----GPY-LV 208 (835)
Q Consensus 136 y~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~-l~-~adLLvIDEAAAIPlpllk~Ll----~~y-~v 208 (835)
... -+.-....++...-|.|.....+. .-. .+.. .+ ..+||||||+==+|-+.-+.++ .+| +.
T Consensus 108 --~~~--g~~~~~~~~~~~~~i~vat~qtl~----~~~--~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~~L 177 (442)
T COG1061 108 --DEI--GIYGGGEKELEPAKVTVATVQTLA----RRQ--LLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYPRL 177 (442)
T ss_pred --ccc--ceecCceeccCCCcEEEEEhHHHh----hhh--hhhhhcccccCEEEEEccccCCcHHHHHHHHhhhccccee
Confidence 000 000011111111112222211111 000 1111 22 6899999999999988777666 345 44
Q ss_pred EEEeeccCCcc
Q 003262 209 FLSSTVNGYEG 219 (835)
Q Consensus 209 flsSTi~GYEG 219 (835)
=|+.|-. ++.
T Consensus 178 GLTATp~-R~D 187 (442)
T COG1061 178 GLTATPE-RED 187 (442)
T ss_pred eeccCce-eec
Confidence 4788844 555
No 181
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.28 E-value=0.74 Score=54.93 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAI 99 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlai 99 (835)
.|.+++..+..++..++....++++|++|.|||++.-+.+
T Consensus 20 Gq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 20 GQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 6888888888888887776678999999999999765443
No 182
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=93.22 E-value=0.27 Score=53.06 Aligned_cols=71 Identities=24% Similarity=0.276 Sum_probs=50.9
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFV 127 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~ 127 (835)
--..|.++|..=+++...+.....+.|+|+||.|||+++--.+...-..|..=|-|+.-....+..+++.+
T Consensus 31 Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l 101 (249)
T PF05673_consen 31 GIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLL 101 (249)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHH
Confidence 34567777777777777776667899999999999999976666666667655666655555555555544
No 183
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.16 E-value=1.1 Score=52.94 Aligned_cols=44 Identities=30% Similarity=0.331 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 59 LDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 59 ~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
..|..++.++..++..++....+++||+||.|||++.=+ +|..+
T Consensus 24 iGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~Ari-lAk~L 67 (507)
T PRK06645 24 QGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARI-IAKAV 67 (507)
T ss_pred cCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHH-HHHHh
Confidence 368888888888888887767899999999999997644 34443
No 184
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.13 E-value=0.88 Score=49.48 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Q 003262 61 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGA 102 (835)
Q Consensus 61 QakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~a 102 (835)
|..++..+..++..++. ..++++|++|.|||++.-..+..+
T Consensus 20 ~~~~~~~L~~~~~~~~~-~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 20 QDEVVERLSRAVDSPNL-PHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred CHHHHHHHHHHHhCCCC-ceEEEECCCCCCHHHHHHHHHHHh
Confidence 45555555555554433 368999999999999876544433
No 185
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=93.05 E-value=0.11 Score=61.50 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=19.9
Q ss_pred eCcccccCChHHHHHHHHHHHHh
Q 003262 423 THPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 423 vhPd~q~mGyGsraL~~L~~~~~ 445 (835)
++|+||++|||+++|+.++++..
T Consensus 465 ~~~~~rg~GiG~~Ll~~ae~~Ar 487 (522)
T TIGR01211 465 GDDEWQHRGYGRRLLEEAERIAA 487 (522)
T ss_pred CChhHhCcCHHHHHHHHHHHHHH
Confidence 56999999999999999887653
No 186
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.00 E-value=0.75 Score=56.72 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
.|.+++.++...+..++....++++|.||.|||++.= ++|..+
T Consensus 20 GQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAr-iLAKaL 62 (830)
T PRK07003 20 GQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSR-IFAKAL 62 (830)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHH-HHHHHh
Confidence 5888888888888888777788999999999998653 344444
No 187
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.98 E-value=0.89 Score=55.28 Aligned_cols=121 Identities=21% Similarity=0.295 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccccccc
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEH 139 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~ 139 (835)
.|.+++..+..++..++....++++|+||.|||++.=+. |..+... +.+...|...- -.++ .++-..|
T Consensus 20 GQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~l-Ak~L~c~--~~~~~~pCg~C------~~C~---~i~~g~~ 87 (647)
T PRK07994 20 GQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLL-AKGLNCE--TGITATPCGEC------DNCR---EIEQGRF 87 (647)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH-HHhhhhc--cCCCCCCCCCC------HHHH---HHHcCCC
Confidence 578888888899988888777899999999999966443 4433221 10000121110 1111 1222345
Q ss_pred ccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhh
Q 003262 140 IDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLL 203 (835)
Q Consensus 140 ~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll 203 (835)
.|+-.+.. ..+ ..|.-+|.-...++|- |. -+..-++|||||=.+...-...|+
T Consensus 88 ~D~ieida---as~---~~VddiR~li~~~~~~-p~----~g~~KV~IIDEah~Ls~~a~NALL 140 (647)
T PRK07994 88 VDLIEIDA---ASR---TKVEDTRELLDNVQYA-PA----RGRFKVYLIDEVHMLSRHSFNALL 140 (647)
T ss_pred CCceeecc---ccc---CCHHHHHHHHHHHHhh-hh----cCCCEEEEEechHhCCHHHHHHHH
Confidence 55433311 100 1122222222233332 22 135679999999999987776666
No 188
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.95 E-value=1.3 Score=52.43 Aligned_cols=43 Identities=26% Similarity=0.275 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
.|.+++..+...+..++....++++|++|.|||++.= ++|..+
T Consensus 18 Gq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~-~lA~~l 60 (504)
T PRK14963 18 GQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTAR-LIAMAV 60 (504)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHH-HHHHHH
Confidence 4777888888888887776677999999999999874 445444
No 189
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.90 E-value=0.96 Score=50.54 Aligned_cols=43 Identities=28% Similarity=0.384 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
.|..++..+...+..++....+++.|++|.|||++.-.. |..+
T Consensus 21 g~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l-a~~l 63 (367)
T PRK14970 21 GQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARIL-ARKI 63 (367)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH-HHHh
Confidence 566777788888888877778999999999999877554 4433
No 190
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.72 E-value=1.3 Score=52.03 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
.|..++.++..++..++....++++|+||.|||+ +-.++|..+
T Consensus 20 Gq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTt-lAr~lAk~L 62 (486)
T PRK14953 20 GQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTT-IARILAKVL 62 (486)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHH-HHHHHHHHh
Confidence 6888888999999888777677899999999955 445556555
No 191
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.66 E-value=0.94 Score=53.13 Aligned_cols=39 Identities=15% Similarity=0.306 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLA 98 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGla 98 (835)
.|.+++..+..++..++....++++|++|.|||++.=+.
T Consensus 18 Gq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 18 GQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 466777777788888877667899999999999976543
No 192
>PF04466 Terminase_3: Phage terminase large subunit; InterPro: IPR006701 Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possesses an endonuclease and ATPase activity that requires Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences [, ].; GO: 0006323 DNA packaging; PDB: 2WBN_A 2WC9_A.
Probab=92.65 E-value=0.033 Score=63.15 Aligned_cols=113 Identities=17% Similarity=0.307 Sum_probs=0.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH-HHHcCCCcEEEecCChHhH-HHHHHHHHhhhccccccccccceeeecCCCCCCcce
Q 003262 79 STVALLAARGRGKSAALGLAIAG-AIAAGYSNIFVTAPSPENL-KTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPI 156 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~-ai~~g~~nI~VTAPs~enl-~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~ai 156 (835)
+..++.|+||.|||....+.+.. ++.... +++|+-.....+ .++|+-+...++.+|..+. |++..|.
T Consensus 3 r~~v~~GGrGS~KS~~~a~~li~~~~~~~~-~~l~~R~~~~sl~~Sv~~~l~~~i~~~gl~~~--f~~~~s~-------- 71 (387)
T PF04466_consen 3 RYIVLKGGRGSGKSSFIAQKLILRAMQYPG-RILCVRKVQNSLRDSVYAQLKWAIDRLGLSDY--FKINKSP-------- 71 (387)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEECCCCchHHHHHHHHHHHHHHhCCC-cEEEEEccccHHHHHHHHHHHHHHHhcCCCce--EEEcCCC--------
Confidence 46789999999999998876644 434433 455554443333 4567777778888887754 3333221
Q ss_pred eEeeeeeccceeEEeeCCccccc---cCCCcEEEEecccCCCHHHHHHhhc
Q 003262 157 VRINIYRQHRQTIQYMEPHEHEK---LAQVELLVIDEAAAIPLPVVRSLLG 204 (835)
Q Consensus 157 vrvni~~~hrq~Iqyi~P~d~~~---l~~adLLvIDEAAAIPlpllk~Ll~ 204 (835)
.+ ++...++.|.|.--|+..+ +...+++.|+||.-+.-.-+.+|..
T Consensus 72 ~~--i~~~~Gs~i~F~Gld~~~kiKS~~~~~~~w~EEa~e~~~~~~~~l~~ 120 (387)
T PF04466_consen 72 IE--IYKPNGSKIIFRGLDDPEKIKSIKGIDIIWVEEAEEFSEEDFDQLIP 120 (387)
T ss_dssp ---------------------------------------------------
T ss_pred ce--EEccCCCEEEEeCCCChhhcCCcccccEEEEechhhccHHHHHHHHH
Confidence 11 2333455666665565544 3468999999999988777666653
No 193
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=92.63 E-value=0.069 Score=54.59 Aligned_cols=79 Identities=14% Similarity=0.051 Sum_probs=56.6
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccc
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHL 494 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l 494 (835)
+.=+-..||+|+|||+|+|+++++...+........
T Consensus 75 ~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~-------------------------------------------- 110 (171)
T COG3153 75 WLGLAPLAVDPEYQGQGIGSALVREGLEALRLAGAS-------------------------------------------- 110 (171)
T ss_pred eEEEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCC--------------------------------------------
Confidence 345667899999999999999999887765432210
Q ss_pred cccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCCcc
Q 003262 495 RERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHSE 551 (835)
Q Consensus 495 ~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~~~ 551 (835)
. -+=+| =..||.|.||.++--.+-+-..+......|...|...
T Consensus 111 ------~----v~vlG----dp~YY~rfGF~~~~~~~l~~p~~~~~~~fl~~~L~~~ 153 (171)
T COG3153 111 ------A----VVVLG----DPTYYSRFGFEPAAGAKLYAPGPVPDERFLALELGDG 153 (171)
T ss_pred ------E----EEEec----CcccccccCcEEccccccccCCCCCCceEEEEEccCC
Confidence 0 01111 2358899999999877777666667888999988864
No 194
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.58 E-value=0.48 Score=54.70 Aligned_cols=103 Identities=22% Similarity=0.336 Sum_probs=59.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-H-cCCCcEEEecCChH--hHHHHHHHHHhhhccccccccccceeeecCCCCCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAI-A-AGYSNIFVTAPSPE--NLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLR 153 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai-~-~g~~nI~VTAPs~e--nl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~ 153 (835)
.+.+++.|+.|.|||+++...++.+. . .|++-.+||+-+.. ++..|..+.. .+|. .+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~----~~~v----p~~~~-------- 284 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAK----IMGI----PVEVV-------- 284 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHH----HhCC----ceEcc--------
Confidence 34789999999999998876555554 3 35555677775533 2333433331 1221 11111
Q ss_pred cceeEeeeeeccceeEEeeCCccc----cccCCCcEEEEecccCCCHH-----HHHHhhc----C--CeEEEEeec
Q 003262 154 KPIVRINIYRQHRQTIQYMEPHEH----EKLAQVELLVIDEAAAIPLP-----VVRSLLG----P--YLVFLSSTV 214 (835)
Q Consensus 154 ~aivrvni~~~hrq~Iqyi~P~d~----~~l~~adLLvIDEAAAIPlp-----llk~Ll~----~--y~vflsSTi 214 (835)
..|+++ ..+..+|++|||-+.-.|.. .++.++. + .++++++|.
T Consensus 285 ------------------~~~~~l~~~l~~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~ 342 (424)
T PRK05703 285 ------------------YDPKELAKALEQLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATT 342 (424)
T ss_pred ------------------CCHHhHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCC
Confidence 112222 23456899999999887764 5667765 1 144567763
No 195
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=92.51 E-value=0.37 Score=37.32 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=39.4
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKL 707 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl 707 (835)
.|++.+..++....+++.++.+||+++|++...+-..++++.+++
T Consensus 10 ~l~~~~~~~~~~~~~~~~~~~~ia~~~~~s~~~i~~~~~~~~~~l 54 (55)
T cd06171 10 KLPEREREVILLRFGEGLSYEEIAEILGISRSTVRQRLHRALKKL 54 (55)
T ss_pred hCCHHHHHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 478888999999999999999999999999999988888776653
No 196
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.48 E-value=0.24 Score=48.58 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG 106 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g 106 (835)
+|-+.+.++++ .......+.++|+|++|.|||++|--.+..+...+
T Consensus 7 ~e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~ 52 (185)
T PF13191_consen 7 EEIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERG 52 (185)
T ss_dssp HHHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 44455555555 23333346899999999999999987666665553
No 197
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.47 E-value=1.2 Score=44.15 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=28.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEec-CChHhHH
Q 003262 81 VALLAARGRGKSAALGLAIAGAIAAGYSNIFVTA-PSPENLK 121 (835)
Q Consensus 81 v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTA-Ps~enl~ 121 (835)
++|+|+.|.|||+..--.+..+...|..-+|||. .+++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~ 43 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELI 43 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHH
Confidence 5799999999999665444555567776677765 4444443
No 198
>PRK14701 reverse gyrase; Provisional
Probab=92.45 E-value=0.43 Score=63.30 Aligned_cols=66 Identities=21% Similarity=0.151 Sum_probs=48.1
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHh
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~k 129 (835)
..|.-|+.++-.++. .+-+++.|+.|.|||+ .++.++...+..-..++|.+|+.+=+....+.+..
T Consensus 79 ~pt~iQ~~~i~~il~-------G~d~li~APTGsGKTl-~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~ 144 (1638)
T PRK14701 79 EFWSIQKTWAKRILR-------GKSFSIVAPTGMGKST-FGAFIALFLALKGKKCYIILPTTLLVKQTVEKIES 144 (1638)
T ss_pred CCCHHHHHHHHHHHc-------CCCEEEEEcCCCCHHH-HHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHH
Confidence 378899998876654 2357899999999999 56555554433224799999999987777666544
No 199
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.39 E-value=1 Score=54.32 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLA 98 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGla 98 (835)
.|..++.++..++..++....++++|+||.||+++.-+.
T Consensus 28 Gq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~l 66 (598)
T PRK09111 28 GQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARIL 66 (598)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 577888888888888887778999999999999976443
No 200
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.21 E-value=1.4 Score=53.47 Aligned_cols=43 Identities=21% Similarity=0.368 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
.|.+++..+..++..++....+.++|+||.|||++.=+ +|..+
T Consensus 20 GQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~-lAk~L 62 (618)
T PRK14951 20 GQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRI-LAKSL 62 (618)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHH-HHHHh
Confidence 47788888888888888877889999999999997654 44444
No 201
>PRK09694 helicase Cas3; Provisional
Probab=92.18 E-value=0.6 Score=58.51 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=40.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcEEEecCChHhHHHHHHHHHh
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAA-GYSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~-g~~nI~VTAPs~enl~tlFef~~k 129 (835)
...++|+|+.|.|||-|.-+++..+++. |..+||++.|+......+|+-+.+
T Consensus 301 pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 301 PGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHH
Confidence 3478999999999999854433334444 467899999999999999987654
No 202
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=92.12 E-value=0.27 Score=57.99 Aligned_cols=68 Identities=26% Similarity=0.124 Sum_probs=53.6
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--C-CCc-EEEecCChHhHHHHHHHHHhh
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--G-YSN-IFVTAPSPENLKTLFEFVCKG 130 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g-~~n-I~VTAPs~enl~tlFef~~kg 130 (835)
..|.=|++++-.+++ + +-++..|..|.|||+|-+|-+-..+.. . ... .+|-+|+.|=+..+++-+.+-
T Consensus 51 ~pt~IQ~~~IP~~l~----g---~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~ 122 (513)
T COG0513 51 EPTPIQLAAIPLILA----G---RDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKL 122 (513)
T ss_pred CCCHHHHHHHHHHhC----C---CCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHH
Confidence 368999999876654 2 578999999999999999998777652 2 122 899999999999888776543
No 203
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.10 E-value=0.62 Score=54.18 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCCcEEEecC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAA---GYSNIFVTAP 115 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~---g~~nI~VTAP 115 (835)
..++.|+|+.|.|||.++ .|++..+.. |++-++||+.
T Consensus 141 ~npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~~ 180 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSGD 180 (450)
T ss_pred cCceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEHH
Confidence 358999999999999999 455554432 4555678775
No 204
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=92.05 E-value=0.2 Score=59.18 Aligned_cols=132 Identities=21% Similarity=0.306 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccc
Q 003262 59 LDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKE 138 (835)
Q Consensus 59 ~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e 138 (835)
..|-..+.++..++..++...-..+||.||.|||+.--+. |.++.. .|=-...|--+- . .+++.+.=.+-+
T Consensus 19 vGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~-AkalNC--~~~~~~ePC~~C--~----~Ck~I~~g~~~D 89 (515)
T COG2812 19 VGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARIL-AKALNC--ENGPTAEPCGKC--I----SCKEINEGSLID 89 (515)
T ss_pred cccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHH-HHHhcC--CCCCCCCcchhh--h----hhHhhhcCCccc
Confidence 5688888888899988887778899999999999965442 444432 221111222211 1 112211101111
Q ss_pred cccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhhc----C--CeE-EEE
Q 003262 139 HIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG----P--YLV-FLS 211 (835)
Q Consensus 139 ~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~----~--y~v-fls 211 (835)
-+.++.- | |.- |.=.|.-+..++|.+- -+..-+.||||+=++--.-...||+ | |.+ +|+
T Consensus 90 viEiDaA-S-----n~g---VddiR~i~e~v~y~P~-----~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlA 155 (515)
T COG2812 90 VIEIDAA-S-----NTG---VDDIREIIEKVNYAPS-----EGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILA 155 (515)
T ss_pred chhhhhh-h-----ccC---hHHHHHHHHHhccCCc-----cccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEe
Confidence 1111111 1 111 1222444556777543 2457899999999999988888885 3 444 478
Q ss_pred ee
Q 003262 212 ST 213 (835)
Q Consensus 212 ST 213 (835)
||
T Consensus 156 TT 157 (515)
T COG2812 156 TT 157 (515)
T ss_pred cC
Confidence 88
No 205
>TIGR02959 SigZ RNA polymerase sigma factor, SigZ family. This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937). One of these is designated as SigZ in B. subtilis (Swiss_Prot: SIGZ_BACSU). Interestingly, this group has a very sporatic distribution, B. subtilis, for instance, being the only sequenced strain of Bacilli with a member. Dechloromonas aromatica RCB appears to have two of these sigma factors. A member appears on a plasmid found in Photobacterium profundum SS9 and Vibrio fischeri ES114 (where a second one is chromosomally encoded).
Probab=91.84 E-value=0.41 Score=47.65 Aligned_cols=55 Identities=15% Similarity=0.055 Sum_probs=49.8
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEISSE 717 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~~~~ 717 (835)
.|++.++.++....+|+.+..+||+++|++.+.+-..+.++.+++-.++......
T Consensus 100 ~L~~~~r~v~~l~~~~g~s~~eIA~~lgis~~tV~~~l~Rar~~Lr~~l~~~~~~ 154 (170)
T TIGR02959 100 ELPDEYREAIRLTELEGLSQQEIAEKLGLSLSGAKSRVQRGRKKLKELLETCCHF 154 (170)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhCCe
Confidence 5789999999999999999999999999999999999999999999988765433
No 206
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.67 E-value=1.9 Score=51.55 Aligned_cols=43 Identities=26% Similarity=0.318 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
.|.+.+.++..++..++....++++|+||.||+++.-+. |.++
T Consensus 20 Gq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~l-Akal 62 (559)
T PRK05563 20 GQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIF-AKAV 62 (559)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH-HHHh
Confidence 577788888888888877777889999999999987654 4443
No 207
>CHL00181 cbbX CbbX; Provisional
Probab=91.58 E-value=1.4 Score=48.18 Aligned_cols=69 Identities=12% Similarity=0.165 Sum_probs=38.6
Q ss_pred HHHHHHHhcccCCCCccccccCCcHHHHHHHHHHHH--HHhc--c----CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC
Q 003262 35 DLKDLKEQLCDDFPVGPLIKKCSTLDQGKAVITFLD--AILD--K----TLRSTVALLAARGRGKSAALGLAIAGAIAAG 106 (835)
Q Consensus 35 ~l~~lk~~l~~~~p~g~Lv~~~~T~DQakAl~~~~~--~i~e--k----~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g 106 (835)
.++++.++|.+. ++.+.....|-+.+.+++. .+.. + +....++|+|++|.|||++.-..+..+...|
T Consensus 13 ~~~~~~~~l~~~-----l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g 87 (287)
T CHL00181 13 QIQEVLDILDEE-----LVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLG 87 (287)
T ss_pred CHHHHHHHHHHh-----cCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 455666666531 3444444455544443322 1111 1 1123589999999999998766555555566
Q ss_pred CC
Q 003262 107 YS 108 (835)
Q Consensus 107 ~~ 108 (835)
+.
T Consensus 88 ~~ 89 (287)
T CHL00181 88 YI 89 (287)
T ss_pred CC
Confidence 53
No 208
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=91.58 E-value=0.36 Score=48.36 Aligned_cols=127 Identities=18% Similarity=0.274 Sum_probs=69.1
Q ss_pred cEEEEEcCCCCCHHH-HHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCccee
Q 003262 79 STVALLAARGRGKSA-ALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIV 157 (835)
Q Consensus 79 ~~v~LTA~RGRGKSA-aLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aiv 157 (835)
..-+|+-..|.|||. .|=-.+..++..+ .+++|-+|+.--+..+-+.+ ..+...-+..+ + .+..+...++
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~~~-~rvLvL~PTRvva~em~~aL----~~~~~~~~t~~--~--~~~~~g~~~i 75 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIKRR-LRVLVLAPTRVVAEEMYEAL----KGLPVRFHTNA--R--MRTHFGSSII 75 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHHTT---EEEEESSHHHHHHHHHHT----TTSSEEEESTT--S--S----SSSSE
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHHcc-CeEEEecccHHHHHHHHHHH----hcCCcccCcee--e--eccccCCCcc
Confidence 355899999999999 5777777788777 48999999998887776554 32222211111 1 1123456666
Q ss_pred EeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHH------HHHhh--cCC-eEEEEeeccCCcc
Q 003262 158 RINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPV------VRSLL--GPY-LVFLSSTVNGYEG 219 (835)
Q Consensus 158 rvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpl------lk~Ll--~~y-~vflsSTi~GYEG 219 (835)
.|.-+.. --+|+.. -..+..+|++|+||+=--...- ++.+- |.. +||||-|=.|.|.
T Consensus 76 ~vMc~at---~~~~~~~--p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG~~~ 141 (148)
T PF07652_consen 76 DVMCHAT---YGHFLLN--PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAESGEAKVIFMTATPPGSED 141 (148)
T ss_dssp EEEEHHH---HHHHHHT--SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT---
T ss_pred cccccHH---HHHHhcC--cccccCccEEEEeccccCCHHHHhhheeHHHhhhccCeeEEEEeCCCCCCCC
Confidence 6654332 1223322 2335689999999996654432 22222 222 6889999988764
No 209
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=91.52 E-value=0.76 Score=51.44 Aligned_cols=73 Identities=11% Similarity=0.155 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC--CCcEEEecCChHhHHHHHHHHHhhh
Q 003262 59 LDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG--YSNIFVTAPSPENLKTLFEFVCKGF 131 (835)
Q Consensus 59 ~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g--~~nI~VTAPs~enl~tlFef~~kgl 131 (835)
.+|.+.+..++.....+.....++|+|+||.|||+++=-.+..+-..+ +.-|+|.+....+...++..+...+
T Consensus 36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l 110 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQL 110 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHh
Confidence 345555666654433333345689999999999999977666554443 5568888877666666666555443
No 210
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.51 E-value=0.66 Score=58.09 Aligned_cols=45 Identities=27% Similarity=0.372 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG 106 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g 106 (835)
.|.+.|..+++.+..++.. -++|+|+.|.||||+.-. +|..+..|
T Consensus 191 Gr~~ei~~~i~~l~r~~~~-n~lLvG~pGvGKTal~~~-La~~i~~~ 235 (852)
T TIGR03345 191 GRDDEIRQMIDILLRRRQN-NPILTGEAGVGKTAVVEG-LALRIAAG 235 (852)
T ss_pred CCHHHHHHHHHHHhcCCcC-ceeEECCCCCCHHHHHHH-HHHHHhhC
Confidence 4666788888877666554 457999999999998854 45555444
No 211
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.48 E-value=2.3 Score=45.69 Aligned_cols=51 Identities=16% Similarity=0.125 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEec
Q 003262 58 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTA 114 (835)
Q Consensus 58 T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTA 114 (835)
|.-..+.+..+...+.. +.++.|+|+.|.|||++.- ++|. ..|..-++|+.
T Consensus 4 t~~~~~l~~~~l~~l~~---g~~vLL~G~~GtGKT~lA~-~la~--~lg~~~~~i~~ 54 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKS---GYPVHLRGPAGTGKTTLAM-HVAR--KRDRPVMLING 54 (262)
T ss_pred CHHHHHHHHHHHHHHhc---CCeEEEEcCCCCCHHHHHH-HHHH--HhCCCEEEEeC
Confidence 44455555555555544 4589999999999998653 3443 34655555544
No 212
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=91.46 E-value=1.6 Score=52.89 Aligned_cols=161 Identities=22% Similarity=0.295 Sum_probs=105.2
Q ss_pred CCcHHHHHHHHHHHHHHhccCC-CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 56 CSTLDQGKAVITFLDAILDKTL-RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~-r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
..|.+|.+++..+..-++.... .| .|-||=|.||+....+|+..++..|| ...+-||+-==...-|+.+.+-|+.+
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~R--LlQGDVGSGKTvVA~laml~ai~~G~-Q~ALMAPTEILA~QH~~~~~~~l~~~ 338 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNR--LLQGDVGSGKTVVALLAMLAAIEAGY-QAALMAPTEILAEQHYESLRKWLEPL 338 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHH--HhccCcCCCHHHHHHHHHHHHHHcCC-eeEEeccHHHHHHHHHHHHHHHhhhc
Confidence 5799999999999776665322 23 69999999999999999999999998 68889999888888888888878766
Q ss_pred cccccccceeeecCCCCCCcce-eE-----ee-eeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhh--cC
Q 003262 135 EYKEHIDYDIVRSSNPDLRKPI-VR-----IN-IYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLL--GP 205 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~~~~ai-vr-----vn-i~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll--~~ 205 (835)
|..-. + +.-|..+.-++.+ .+ ++ |.-+|- -| +|-......-|+||||=-=..+..=.+|. |.
T Consensus 339 ~i~V~--l-LtG~~kgk~r~~~l~~l~~G~~~ivVGTHA----Li--Qd~V~F~~LgLVIiDEQHRFGV~QR~~L~~KG~ 409 (677)
T COG1200 339 GIRVA--L-LTGSLKGKARKEILEQLASGEIDIVVGTHA----LI--QDKVEFHNLGLVIIDEQHRFGVHQRLALREKGE 409 (677)
T ss_pred CCeEE--E-eecccchhHHHHHHHHHhCCCCCEEEEcch----hh--hcceeecceeEEEEeccccccHHHHHHHHHhCC
Confidence 53311 0 0111111000000 00 00 111221 00 11111234569999999999998877777 44
Q ss_pred ---CeEEEEeeccCCcccCCchhHHHHHHhh
Q 003262 206 ---YLVFLSSTVNGYEGTGRSLSLKLLHQLE 233 (835)
Q Consensus 206 ---y~vflsSTi~GYEGTGR~fsLKl~~~L~ 233 (835)
+..+||.|= .=|+|+|-..-.|.
T Consensus 410 ~~Ph~LvMTATP-----IPRTLAlt~fgDld 435 (677)
T COG1200 410 QNPHVLVMTATP-----IPRTLALTAFGDLD 435 (677)
T ss_pred CCCcEEEEeCCC-----chHHHHHHHhcccc
Confidence 566687773 66888877666654
No 213
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=91.45 E-value=0.51 Score=58.12 Aligned_cols=104 Identities=19% Similarity=0.313 Sum_probs=59.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecC--C-CCCC
Q 003262 77 LRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSS--N-PDLR 153 (835)
Q Consensus 77 ~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st--~-p~~~ 153 (835)
.+.+.+|-|+=|.|||++|.-.+...+..--.+|+|.|=.. +|-+-+...|..-||.+...|.-.... + -.++
T Consensus 48 ~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRr----SL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~~~~~ 123 (824)
T PF02399_consen 48 KRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRR----SLTKSLAERFKKAGLSGFVNYLDSDDYIIDGRPYD 123 (824)
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHH----HHHHHHHHHHhhcCCCcceeeeccccccccccccC
Confidence 46688999999999999998888777633223566665444 444444444554454443333322110 0 0133
Q ss_pred cceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCC
Q 003262 154 KPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAI 194 (835)
Q Consensus 154 ~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAI 194 (835)
+-++-|+.. || +.++ .+.++|+|||||+-.+
T Consensus 124 rLivqIdSL--~R-----~~~~---~l~~yDvVIIDEv~sv 154 (824)
T PF02399_consen 124 RLIVQIDSL--HR-----LDGS---LLDRYDVVIIDEVMSV 154 (824)
T ss_pred eEEEEehhh--hh-----cccc---cccccCEEEEehHHHH
Confidence 445555433 21 2222 2346899999998764
No 214
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.40 E-value=0.56 Score=51.00 Aligned_cols=41 Identities=24% Similarity=0.375 Sum_probs=28.3
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIA 100 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA 100 (835)
.|.|-.+. ..+++.+... +++|.|+|+.|.|||+.+.-.+.
T Consensus 15 pT~dt~r~-~~ll~~l~~~--~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 15 PTVDTVRY-SYLLDLLLSN--GRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp --HHHHHH-HHHHHHHHHC--TEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcHHHHHH-HHHHHHHHHc--CCcEEEECCCCCchhHHHHhhhc
Confidence 46665553 4456656554 56999999999999998876554
No 215
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.36 E-value=2.2 Score=51.67 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA 104 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~ 104 (835)
.|..++..+..++..++....++++|++|-||++ +..++|..+.
T Consensus 21 Gq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt-~A~~lAk~l~ 64 (614)
T PRK14971 21 GQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTT-CARIFAKTIN 64 (614)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHH-HHHHHHHHhC
Confidence 4778888888888888887789999999999999 6666776653
No 216
>PRK09047 RNA polymerase factor sigma-70; Validated
Probab=91.31 E-value=0.64 Score=45.08 Aligned_cols=51 Identities=14% Similarity=0.036 Sum_probs=47.3
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
..|++.|+.+++..-+|+.|..+||+.||++.+.+...+.++++++-+++.
T Consensus 105 ~~Lp~~~r~v~~l~~~~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 155 (161)
T PRK09047 105 QKLPARQREAFLLRYWEDMDVAETAAAMGCSEGSVKTHCSRATHALAKALE 155 (161)
T ss_pred HhCCHHHHHHHHHHHHhcCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999999999999999999999999999988775
No 217
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=91.30 E-value=0.6 Score=59.62 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=43.1
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHH-HHHHHHHhhhc
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLK-TLFEFVCKGFN 132 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~-tlFef~~kgl~ 132 (835)
.-+.-|.++|..++. + +-+++.++.|.|||.+==| .+++.-| -.+|-+|..+=++ .+......|+.
T Consensus 460 sFRp~Q~eaI~aiL~----G---rDVLVimPTGSGKSLcYQL--PAL~~~G--iTLVISPLiSLmqDQV~~L~~~GI~ 526 (1195)
T PLN03137 460 SFRPNQREIINATMS----G---YDVFVLMPTGGGKSLTYQL--PALICPG--ITLVISPLVSLIQDQIMNLLQANIP 526 (1195)
T ss_pred CCCHHHHHHHHHHHc----C---CCEEEEcCCCccHHHHHHH--HHHHcCC--cEEEEeCHHHHHHHHHHHHHhCCCe
Confidence 356789998875543 2 3588999999999976533 2333333 4799999887765 44444333433
No 218
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=91.26 E-value=0.46 Score=47.93 Aligned_cols=65 Identities=8% Similarity=0.135 Sum_probs=49.3
Q ss_pred CcccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccc
Q 003262 413 LSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLV 492 (835)
Q Consensus 413 lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~ 492 (835)
-.++-|--|=|.|+|||+|+||.+|+.+.+-.-
T Consensus 82 k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~----------------------------------------------- 114 (163)
T KOG3216|consen 82 KQGIYLEDLYVREQYRGKGIGSKLLKFVAEEAD----------------------------------------------- 114 (163)
T ss_pred cceEEEEeeEecchhcccChHHHHHHHHHHHHH-----------------------------------------------
Confidence 356788999999999999999999988764221
Q ss_pred cccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEe
Q 003262 493 HLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYV 529 (835)
Q Consensus 493 ~l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVyl 529 (835)
+....+++|+-.-+ +...+.||+|.|+.-+-.
T Consensus 115 ---~~G~~rv~w~vldw--N~rAi~lY~k~gaq~l~~ 146 (163)
T KOG3216|consen 115 ---KLGTPRVEWVVLDW--NHRAILLYEKVGAQDLKE 146 (163)
T ss_pred ---HcCCCcEEEEEecc--chhHHHHHHHhCccccce
Confidence 01234667776655 689999999999986543
No 219
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=91.24 E-value=1.6 Score=57.72 Aligned_cols=129 Identities=16% Similarity=0.250 Sum_probs=80.3
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCC--CCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhc
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARG--RGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFN 132 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RG--RGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~ 132 (835)
...+.+|..|+..++. . +..|++.+.-| .|||+.|.-.+..+-..|| .|.+-||+-..+++|-+= .||+
T Consensus 280 ~~~~~~q~~Av~~il~-----d-r~~v~iv~~~GgAtGKtt~l~~l~~~a~~~G~-~V~~lApt~~a~~~L~e~--~gi~ 350 (1623)
T PRK14712 280 VPRTAGYSDAVSVLAQ-----D-RPSLAIVSGQGGAAGQRERVAELVMMAREQGR-EVQIIAADRRSQMNLKQD--ERLS 350 (1623)
T ss_pred cccchhHHHHHHHHhc-----C-CCceEEEEecccccccHHHHHHHHHHHHhCCc-EEEEEeCCHHHHHHHHhc--cCCC
Confidence 4456789998876652 2 33455665555 8999999965555666786 799999999999988532 1221
Q ss_pred cccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhhc-----CCe
Q 003262 133 AIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG-----PYL 207 (835)
Q Consensus 133 ~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~-----~y~ 207 (835)
+ +.+.+ ... |....+ ...-+++|||||-.++..-+..|+. .-.
T Consensus 351 a---------~Tva~-----------~~~---------~l~~~~---~~~~~ilIVDEA~~Ls~rdm~~Ll~~A~~~gar 398 (1623)
T PRK14712 351 G---------ELITG-----------RRQ---------LLEGMA---FTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQ 398 (1623)
T ss_pred c---------hhhhh-----------hhh---------hhcccC---CCCCcEEEEECCCcCCHHHHHHHHHHHHhcCCE
Confidence 1 00110 000 111111 1234899999999999988888883 124
Q ss_pred EEEEeeccCCcccCCchh
Q 003262 208 VFLSSTVNGYEGTGRSLS 225 (835)
Q Consensus 208 vflsSTi~GYEGTGR~fs 225 (835)
|||.=|-.+- +.|+.|+
T Consensus 399 VllgD~~Q~~-aAG~af~ 415 (1623)
T PRK14712 399 VLITDSGQRT-GTGSALM 415 (1623)
T ss_pred EEEEechhhh-hcccHHH
Confidence 6666554443 3777764
No 220
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.21 E-value=2.9 Score=49.78 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGL 97 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGl 97 (835)
.|.+++..+..++..++....++++|++|.|||++.-+
T Consensus 20 Gq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~ 57 (527)
T PRK14969 20 GQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARI 57 (527)
T ss_pred CcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHH
Confidence 67888888888888888777889999999999986544
No 221
>PRK04195 replication factor C large subunit; Provisional
Probab=91.15 E-value=2.6 Score=49.29 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHH
Q 003262 59 LDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLK 121 (835)
Q Consensus 59 ~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~ 121 (835)
.++.+.|..+++....+...+.++|+|++|.|||++.=. +| -..|+.-|.+++....+..
T Consensus 20 ~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~a-la--~el~~~~ielnasd~r~~~ 79 (482)
T PRK04195 20 EKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHA-LA--NDYGWEVIELNASDQRTAD 79 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHH-HH--HHcCCCEEEEcccccccHH
Confidence 344445555555554555467899999999999987632 22 2347666777665444333
No 222
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=91.08 E-value=0.5 Score=47.35 Aligned_cols=49 Identities=10% Similarity=0.097 Sum_probs=46.0
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~ 711 (835)
.|++.|+.+++..-+++.|.+|||+.||++.+-+...+.++++++..++
T Consensus 127 ~Lp~~~R~v~~L~~~~g~s~~EIA~~lgis~~tVk~~l~rAl~~~~~~~ 175 (178)
T PRK12529 127 TLRPRVKQAFLMATLDGMKQKDIAQALDIALPTVKKYIHQAYVTCLSLM 175 (178)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHhC
Confidence 5889999999999999999999999999999999999999999998764
No 223
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=90.99 E-value=0.65 Score=45.52 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=48.6
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEIS 715 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~~ 715 (835)
.|++.+..++....+++.|+.+||+.+|++.+.|-..+.++.+++-+.|....
T Consensus 128 ~L~~~~r~vl~l~~~~~~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~~ 180 (182)
T PRK09652 128 SLPEELRTAITLREIEGLSYEEIAEIMGCPIGTVRSRIFRAREALRAKLQPLL 180 (182)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999998887553
No 224
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=90.97 E-value=0.7 Score=44.50 Aligned_cols=82 Identities=17% Similarity=0.073 Sum_probs=57.1
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccc
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLR 495 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~ 495 (835)
....-+-..|+|+|+|||+.++.++.+|.-.... ..
T Consensus 96 ~~~ig~~l~~~~~g~G~~tea~~~~l~~~f~~~~--------------l~------------------------------ 131 (187)
T COG1670 96 LAEIGYWLDPEYWGKGYATEALRALLDYAFEELG--------------LH------------------------------ 131 (187)
T ss_pred eEEEEEEEChHHhcCchHHHHHHHHHHHhhhhcC--------------ce------------------------------
Confidence 3455556699999999999999999998632110 00
Q ss_pred ccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccC
Q 003262 496 ERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPL 548 (835)
Q Consensus 496 e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L 548 (835)
-.....+--+..-.+..+|+||..........-..|++-..++-.+
T Consensus 132 -------ri~~~~~~~N~~S~rv~ek~Gf~~eg~~~~~~~~~g~~~d~~~~~~ 177 (187)
T COG1670 132 -------RIEATVDPENEASIRVYEKLGFRLEGELRQHEFIKGRWRDTVLYSL 177 (187)
T ss_pred -------EEEEEecCCCHHHHHHHHHcCChhhhhhhhceeeCCeeeeEEEEEE
Confidence 1123445558899999999999999987777666775444444333
No 225
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=90.95 E-value=1.8 Score=51.85 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
.|..++.++..++..++....++++|++|.||+++.=+ +|.++
T Consensus 20 Gqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~-lAk~L 62 (563)
T PRK06647 20 GQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARA-FARCL 62 (563)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHH-HHHhh
Confidence 58888889999999888877899999999999997654 34433
No 226
>PRK00118 putative DNA-binding protein; Validated
Probab=90.92 E-value=0.87 Score=43.17 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=48.5
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
..|++.|+.++.....++.|+.+||+.+|++.+-+...+.++.+++-+++..+
T Consensus 16 ~~L~ekqRevl~L~y~eg~S~~EIAe~lGIS~~TV~r~L~RArkkLr~~~~~~ 68 (104)
T PRK00118 16 SLLTEKQRNYMELYYLDDYSLGEIAEEFNVSRQAVYDNIKRTEKLLEDYEEKL 68 (104)
T ss_pred ccCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999998888755
No 227
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=90.88 E-value=0.34 Score=58.29 Aligned_cols=43 Identities=28% Similarity=0.337 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
.|..++..|..++..++....++++|+||.|||++.= ++|.++
T Consensus 20 GQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~-~lAk~L 62 (605)
T PRK05896 20 GQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAK-IFAKAI 62 (605)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHH-HHHHHh
Confidence 6888888899998887777789999999999998664 344444
No 228
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=90.86 E-value=0.35 Score=49.63 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=16.1
Q ss_pred CCcEEEEecccCCCHHHHHHh
Q 003262 182 QVELLVIDEAAAIPLPVVRSL 202 (835)
Q Consensus 182 ~adLLvIDEAAAIPlpllk~L 202 (835)
..+.+||||+-.+|.-.+.-+
T Consensus 62 ~~~~liiDE~~~~~~g~l~~l 82 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPGYLLLL 82 (234)
T ss_pred cCCEEEEeccccCChHHHHHH
Confidence 489999999999995444433
No 229
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=90.84 E-value=2.7 Score=48.34 Aligned_cols=43 Identities=23% Similarity=0.238 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhccC---------CCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKT---------LRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~---------~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
.|-+++..+..++..++ ....+.++|+.|.||+++. .++|.++
T Consensus 9 Gq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA-~~lA~~l 60 (394)
T PRK07940 9 GQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAA-RAFAAAL 60 (394)
T ss_pred ChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHH-HHHHHHh
Confidence 57777777878777654 5567899999999999854 3444444
No 230
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=90.84 E-value=2.9 Score=50.70 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHH
Q 003262 61 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIA 100 (835)
Q Consensus 61 QakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA 100 (835)
|..++.+++..+.... ..+++|+|++|.|||++.-+...
T Consensus 159 qs~~~~~l~~~ia~~~-~~~vlL~Gp~GtGKTTLAr~i~~ 197 (615)
T TIGR02903 159 QERAIKALLAKVASPF-PQHIILYGPPGVGKTTAARLALE 197 (615)
T ss_pred CcHHHHHHHHHHhcCC-CCeEEEECCCCCCHHHHHHHHHH
Confidence 6666667777665443 45799999999999998866543
No 231
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=90.81 E-value=2.7 Score=43.20 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=35.0
Q ss_pred CCCcEEEEeccc------CCCHHHHHHhhc--CC---eEEEEeeccCCcccCCchhHHHHHHhhh
Q 003262 181 AQVELLVIDEAA------AIPLPVVRSLLG--PY---LVFLSSTVNGYEGTGRSLSLKLLHQLEQ 234 (835)
Q Consensus 181 ~~adLLvIDEAA------AIPlpllk~Ll~--~y---~vflsSTi~GYEGTGR~fsLKl~~~L~~ 234 (835)
+++||||+||.- -||..-|..++. |. +|+ |||.-.=+|+..-.-
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVl----------TGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVII----------TGRGCPQDLLELADL 150 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEE----------ECCCCCHHHHHhCce
Confidence 679999999998 799999999994 32 566 999997777765543
No 232
>PRK07037 extracytoplasmic-function sigma-70 factor; Validated
Probab=90.79 E-value=0.73 Score=44.97 Aligned_cols=51 Identities=10% Similarity=0.124 Sum_probs=46.9
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
.|++.++.++....+++.|..+||+++|++.+-|-..+.++++++-+++++
T Consensus 109 ~L~~~~r~v~~l~~~~~~s~~EIA~~lgis~~tV~~~l~ra~~~lr~~l~~ 159 (163)
T PRK07037 109 ELPARTRYAFEMYRLHGETQKDIARELGVSPTLVNFMIRDALVHCRKCLDA 159 (163)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 578899999999999999999999999999999999999999999888754
No 233
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=90.76 E-value=0.29 Score=45.56 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=39.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc-----CCCcEEEecCChHhHHHHHHHHHhhh
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAA-----GYSNIFVTAPSPENLKTLFEFVCKGF 131 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~-----g~~nI~VTAPs~enl~tlFef~~kgl 131 (835)
++.++|+|+.|.|||+++=-.+...... ...-++|+.|+..+...+++-+...+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 62 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEAL 62 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999997766655443 44558999999998888887776544
No 234
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.63 E-value=0.9 Score=53.64 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=36.8
Q ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhh
Q 003262 83 LLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGF 131 (835)
Q Consensus 83 LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl 131 (835)
|.|+.|.|||.+.=.+++.++..|. +++|.+|..+=+..+++.+.+.|
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l~~g~-~vLvlvP~i~L~~Q~~~~l~~~f 49 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLALGK-SVLVLVPEIALTPQMIQRFKYRF 49 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHHHHHHh
Confidence 6799999999876555666777774 68999999888777776665544
No 235
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.61 E-value=2.5 Score=52.14 Aligned_cols=139 Identities=16% Similarity=0.182 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHh--hhccccc
Q 003262 59 LDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCK--GFNAIEY 136 (835)
Q Consensus 59 ~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~k--gl~~lgy 136 (835)
.-|.+||..++. .++. +.-+|..+-|.|||-. |++++..+ + .+++|-+|+..-+..-.+-+.+ +++..
T Consensus 258 pYQ~eAl~~~~~---~gr~-r~GIIvLPtGaGKTlv-ai~aa~~l--~-k~tLILvps~~Lv~QW~~ef~~~~~l~~~-- 327 (732)
T TIGR00603 258 PYQEKSLSKMFG---NGRA-RSGIIVLPCGAGKSLV-GVTAACTV--K-KSCLVLCTSAVSVEQWKQQFKMWSTIDDS-- 327 (732)
T ss_pred HHHHHHHHHHHh---cCCC-CCcEEEeCCCCChHHH-HHHHHHHh--C-CCEEEEeCcHHHHHHHHHHHHHhcCCCCc--
Confidence 359999887743 3332 2346889999999865 66665544 2 4678888988766554332221 11110
Q ss_pred cccccceeeecCCCC-CCcceeEeeeeeccceeEEeeCCc--c----cccc--CCCcEEEEecccCCCHHHHHHhhc---
Q 003262 137 KEHIDYDIVRSSNPD-LRKPIVRINIYRQHRQTIQYMEPH--E----HEKL--AQVELLVIDEAAAIPLPVVRSLLG--- 204 (835)
Q Consensus 137 ~e~~dy~i~~st~p~-~~~aivrvni~~~hrq~Iqyi~P~--d----~~~l--~~adLLvIDEAAAIPlpllk~Ll~--- 204 (835)
......+...+ +.. ...|.|.- .|++....+. + ...+ ..++|||+|||=-+|-+..++++.
T Consensus 328 ----~I~~~tg~~k~~~~~-~~~VvVtT--Yq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr~il~~l~ 400 (732)
T TIGR00603 328 ----QICRFTSDAKERFHG-EAGVVVST--YSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFRRVLTIVQ 400 (732)
T ss_pred ----eEEEEecCccccccc-CCcEEEEE--HHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHHHHHHhcC
Confidence 00001111100 000 00111110 1112111110 0 0112 368899999999999999987663
Q ss_pred -CCeEEEEeec
Q 003262 205 -PYLVFLSSTV 214 (835)
Q Consensus 205 -~y~vflsSTi 214 (835)
+|.+-|+.|-
T Consensus 401 a~~RLGLTATP 411 (732)
T TIGR00603 401 AHCKLGLTATL 411 (732)
T ss_pred cCcEEEEeecC
Confidence 5677778885
No 236
>PRK12536 RNA polymerase sigma factor; Provisional
Probab=90.53 E-value=0.68 Score=46.38 Aligned_cols=51 Identities=12% Similarity=0.108 Sum_probs=47.0
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
.|++.|+.+++..-+++.|.++||++||++.+.+-..+..+.++|-+++.+
T Consensus 129 ~L~~~~r~v~~l~~~~g~s~~EIA~~l~is~~tV~~~l~rar~~Lr~~l~~ 179 (181)
T PRK12536 129 QLPDRQRLPIVHVKLEGLSVAETAQLTGLSESAVKVGIHRGLKALAAKIRG 179 (181)
T ss_pred HCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 578889999999999999999999999999999999999999999887754
No 237
>PRK11924 RNA polymerase sigma factor; Provisional
Probab=90.45 E-value=0.73 Score=45.01 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=47.0
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
.|++.++.++...-+++.++.+||+++|++.+.|...+.++.+++-+++..-
T Consensus 125 ~L~~~~r~i~~l~~~~~~~~~eIA~~lgis~~tv~~~~~ra~~~lr~~l~~~ 176 (179)
T PRK11924 125 ALPVKQREVFLLRYVEGLSYREIAEILGVPVGTVKSRLRRARQLLRECLEAQ 176 (179)
T ss_pred hCCHHHHHHhhHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999998999999999999999999999999999999988877653
No 238
>PRK11054 helD DNA helicase IV; Provisional
Probab=90.45 E-value=1.2 Score=54.62 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=53.1
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC---CCcEEEecCChHhHHHHHHHHHhhh
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG---YSNIFVTAPSPENLKTLFEFVCKGF 131 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g---~~nI~VTAPs~enl~tlFef~~kgl 131 (835)
-.|..|.+||... ...++|+|+.|.|||++|=--+|.++..+ ..+|++.|.+..++..+-+-+..-+
T Consensus 196 ~L~~~Q~~av~~~---------~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 196 PLNPSQARAVVNG---------EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCHHHHHHHhCC---------CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 4899999998521 13568999999999999977777777654 2489999999999999988776544
No 239
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.40 E-value=2.5 Score=52.05 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLA 98 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGla 98 (835)
.|..++..+..++..++....++++|++|.||+++.=+.
T Consensus 22 GQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 22 GQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHH
Confidence 578888888898988887778899999999999876443
No 240
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=90.38 E-value=0.84 Score=44.50 Aligned_cols=51 Identities=16% Similarity=0.039 Sum_probs=47.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
.|++.|+.+++...+++.|..+||+.+|++.+.+-..+.++.++|-+.+..
T Consensus 106 ~Lp~~~r~v~~l~~~~g~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~l~~ 156 (160)
T PRK09642 106 ELPENYRDVVLAHYLEEKSYQEIALQEKIEVKTVEMKLYRARKWIKKHWKE 156 (160)
T ss_pred hCCHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999999999999999999999998887753
No 241
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=90.36 E-value=2.3 Score=43.17 Aligned_cols=44 Identities=30% Similarity=0.490 Sum_probs=32.1
Q ss_pred cCCCcEEEEecccC------CCHHHHHHhhc--CC---eEEEEeeccCCcccCCchhHHHHHHhh
Q 003262 180 LAQVELLVIDEAAA------IPLPVVRSLLG--PY---LVFLSSTVNGYEGTGRSLSLKLLHQLE 233 (835)
Q Consensus 180 l~~adLLvIDEAAA------IPlpllk~Ll~--~y---~vflsSTi~GYEGTGR~fsLKl~~~L~ 233 (835)
.+++||||+||.-. ||...|..++. |. +|+ |||...=.|+..-.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIl----------TGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVL----------TGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEE----------ECCCCCHHHHHhCc
Confidence 46899999999754 67777888883 32 566 99998766665543
No 242
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.33 E-value=0.81 Score=57.26 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 003262 59 LDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA 105 (835)
Q Consensus 59 ~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~ 105 (835)
..|.+.|..+++.+..++. ...+|+|++|.|||+++- ++|..+..
T Consensus 176 igr~~ei~~~~~~l~r~~~-~n~lL~G~pGvGKT~l~~-~la~~i~~ 220 (852)
T TIGR03346 176 IGRDEEIRRTIQVLSRRTK-NNPVLIGEPGVGKTAIVE-GLAQRIVN 220 (852)
T ss_pred CCcHHHHHHHHHHHhcCCC-CceEEEcCCCCCHHHHHH-HHHHHHhc
Confidence 4566678888887766554 456799999999999884 44554443
No 243
>PRK12512 RNA polymerase sigma factor; Provisional
Probab=90.27 E-value=0.78 Score=45.86 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=47.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
.|++.+..|+....+++.|.++||++||++.+.|-..+.++.+++-..+++
T Consensus 131 ~L~~~~r~v~~l~~~~g~s~~eIA~~l~is~~tV~~~l~ra~~~Lr~~l~~ 181 (184)
T PRK12512 131 TLPPRQRDVVQSISVEGASIKETAAKLSMSEGAVRVALHRGLAALAAKFRS 181 (184)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 578999999999999999999999999999999999999999999877753
No 244
>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
Probab=90.26 E-value=0.51 Score=57.37 Aligned_cols=128 Identities=26% Similarity=0.312 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccc
Q 003262 59 LDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKE 138 (835)
Q Consensus 59 ~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e 138 (835)
..|..++..++. ....+||++.|-||++++ .+++.++..+-.++.+.+|+-.+++.+.++. |..+.....
T Consensus 322 ~~q~~a~~vl~~-------de~smlt~~~~~~~~~~~-~~~~~l~~~~~~~~l~aa~tG~a~~~l~e~t--g~~a~ti~~ 391 (696)
T COG0507 322 LEQKEALDVLVV-------DEVSMLTGGPGTGKTTAI-KAIARLIKEGDGDQLLAAPTGKAAKRLNEST--GLEARTIHR 391 (696)
T ss_pred cccHHHHHHHhc-------CCeeEEeccCCcchHHHH-HHHHHHHHhcCCcEEeechhhHHHHHHHHhh--CcchhHHHH
Confidence 356666654432 357799999999999987 4677788777778999999999999999986 333322111
Q ss_pred cccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhhc---CC-eEEEEeec
Q 003262 139 HIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG---PY-LVFLSSTV 214 (835)
Q Consensus 139 ~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~---~y-~vflsSTi 214 (835)
...+. ...+ ......++|++||||+.++-..+...+.. .. .+++..-+
T Consensus 392 ~~~~~------------------------~~~~----~~~~~~~~d~~iiDe~~ml~~~~~~~l~~~i~~~a~~i~vGD~ 443 (696)
T COG0507 392 LLGLW------------------------EKTG----NNEEPLDGDLLIIDEASMLDTSLAFGLLSAIGKLAKVILVGDV 443 (696)
T ss_pred HHhcc------------------------ccCC----CCCCccccceeEEehhhhHHHHHhhhhhcccccCCeEEEeCCH
Confidence 11100 0001 11234578999999999999965555532 22 34445444
Q ss_pred cCCcccCCch
Q 003262 215 NGYEGTGRSL 224 (835)
Q Consensus 215 ~GYEGTGR~f 224 (835)
+--..-|-|.
T Consensus 444 ~ql~~v~~g~ 453 (696)
T COG0507 444 DQLPSVGAGA 453 (696)
T ss_pred HhcCCCCCCc
Confidence 4444444443
No 245
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=90.20 E-value=0.59 Score=56.29 Aligned_cols=65 Identities=23% Similarity=0.246 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHh
Q 003262 58 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 58 T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~k 129 (835)
...|..||.+.+. |..-+|-|+.|.||+.+.--.+-.++.++-.+|+|+|||--++..|-|=+.+
T Consensus 412 N~SQ~~AV~~VL~-------rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 412 NASQSNAVKHVLQ-------RPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred chHHHHHHHHHHc-------CCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHh
Confidence 3467778766544 4566899999999998876666677777778999999999999999887743
No 246
>TIGR02999 Sig-70_X6 RNA polymerase sigma factor, TIGR02999 family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found in a variety of species including Rhodopirellula baltica which encodes a paralogous group of five.
Probab=90.01 E-value=0.84 Score=45.40 Aligned_cols=49 Identities=20% Similarity=0.112 Sum_probs=46.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~ 711 (835)
.|++.|+.+++..-+++.|..+||+.+|++.+-|...+.++..+|-++|
T Consensus 134 ~Lp~~~r~v~~l~~~~g~s~~EIA~~lgis~~tVk~~l~Rar~~Lr~~l 182 (183)
T TIGR02999 134 QVDPRQAEVVELRFFAGLTVEEIAELLGVSVRTVERDWRFARAWLADEL 182 (183)
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 4889999999999999999999999999999999999999999988776
No 247
>PRK12524 RNA polymerase sigma factor; Provisional
Probab=90.01 E-value=0.87 Score=46.28 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=48.3
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
.|++.|+.+++..-+++.|+++||+.+|++.+-|...+.++.++|-.++..+
T Consensus 136 ~L~~~~r~i~~L~~~~g~s~~eIA~~lgis~~tV~~~l~Ra~~~Lr~~l~~~ 187 (196)
T PRK12524 136 ALPERQRQAVVLRHIEGLSNPEIAEVMEIGVEAVESLTARGKRALAALLAGQ 187 (196)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999988764
No 248
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=89.96 E-value=1.1 Score=48.61 Aligned_cols=73 Identities=21% Similarity=0.212 Sum_probs=52.5
Q ss_pred ccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHH
Q 003262 54 KKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEF 126 (835)
Q Consensus 54 ~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef 126 (835)
.+.--..|.+++..=.....++..--.|.|.|+||.|||++.--.++..-..|..=|=|+=-....+-.|++-
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~ 133 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVEL 133 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHHHHHH
Confidence 3445567999998888888888776789999999999999998777776666765455554333344444433
No 249
>PRK13766 Hef nuclease; Provisional
Probab=89.95 E-value=4.1 Score=50.19 Aligned_cols=126 Identities=21% Similarity=0.304 Sum_probs=70.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeec-CCCCCCcceeE
Q 003262 80 TVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRS-SNPDLRKPIVR 158 (835)
Q Consensus 80 ~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~s-t~p~~~~aivr 158 (835)
-++|.++.|-|||..-.+.++..+......++|.+|+.+-+....+++.+-+...+ ....++.+ +.+. .|
T Consensus 31 n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~----~~v~~~~g~~~~~-----~r 101 (773)
T PRK13766 31 NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPE----EKIVVFTGEVSPE-----KR 101 (773)
T ss_pred CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC----ceEEEEeCCCCHH-----HH
Confidence 45889999999998766666666543346899999998877777766654332111 01111111 1110 01
Q ss_pred eeeeeccceeEEeeCCcccc--------ccCCCcEEEEecccCCC-----HHHHHHhh----cCCeEEEEeeccC
Q 003262 159 INIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIP-----LPVVRSLL----GPYLVFLSSTVNG 216 (835)
Q Consensus 159 vni~~~hrq~Iqyi~P~d~~--------~l~~adLLvIDEAAAIP-----lpllk~Ll----~~y~vflsSTi~G 216 (835)
..++.. ..|-+..|+-+. .+...+++|||||=-+- ..+.+.+. .|+++.||.|..+
T Consensus 102 ~~~~~~--~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~ 174 (773)
T PRK13766 102 AELWEK--AKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGS 174 (773)
T ss_pred HHHHhC--CCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCC
Confidence 111111 235555554221 23468999999996442 22333333 2446778888644
No 250
>PRK09643 RNA polymerase sigma factor SigM; Reviewed
Probab=89.92 E-value=0.84 Score=46.39 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=48.6
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhch
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEISS 716 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~~~ 716 (835)
.|++.|+.+|+...++++|+.+||+++|++.+.+...+.++.++|-+++..+.+
T Consensus 134 ~Lp~~~r~i~~l~~~~g~s~~EIA~~lg~s~~tV~~rl~rar~~Lr~~l~~~~~ 187 (192)
T PRK09643 134 RLPVEQRAALVAVDMQGYSVADAARMLGVAEGTVKSRCARGRARLAELLGYLRA 187 (192)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 478899999999999999999999999999999999999999988888876543
No 251
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=89.88 E-value=0.27 Score=43.44 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=25.4
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHHHH
Q 003262 417 RIVRIATHPSAMRLGYGSTAVELLTRYY 444 (835)
Q Consensus 417 RIVRIAvhPd~q~mGyGsraL~~L~~~~ 444 (835)
=|-||=|||.+||+|++++||+.+...+
T Consensus 7 GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 7 GISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 4889999999999999999999988754
No 252
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.80 E-value=2.6 Score=50.68 Aligned_cols=43 Identities=26% Similarity=0.326 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
.|.+++..+..++..++....++++|+||.||+++.=+ +|.++
T Consensus 20 Gq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~-lak~l 62 (576)
T PRK14965 20 GQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARI-LAKAL 62 (576)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHH-HHHhh
Confidence 57777888888888887777789999999999997643 44444
No 253
>PRK12519 RNA polymerase sigma factor; Provisional
Probab=89.77 E-value=0.77 Score=46.29 Aligned_cols=53 Identities=21% Similarity=0.169 Sum_probs=48.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEIS 715 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~~ 715 (835)
.|++.++.++....+++.+..+||+.+|++.+.|-..+.+++++|-+++.+.+
T Consensus 141 ~L~~~~~~v~~l~~~~g~s~~EIA~~lgis~~tV~~~l~Ra~~~Lr~~l~~~~ 193 (194)
T PRK12519 141 QLPESQRQVLELAYYEGLSQSEIAKRLGIPLGTVKARARQGLLKLRELLQDLL 193 (194)
T ss_pred hCCHHHhhhhhhhhhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888999999999999999999999999999999999999999999887543
No 254
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=89.75 E-value=1.2 Score=50.77 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH-Hc--CCCcEEEecC
Q 003262 79 STVALLAARGRGKSAALGLAIAGAI-AA--GYSNIFVTAP 115 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai-~~--g~~nI~VTAP 115 (835)
.+++|.|++|.|||.++- |++..+ .. |.+-++|++.
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHhCCCCcEEEEEHH
Confidence 589999999999999994 555444 33 3444677653
No 255
>TIGR02948 SigW_bacill RNA polymerase sigma-W factor. This sigma factor is restricted to certain lineages of the order Bacillales.
Probab=89.73 E-value=0.81 Score=45.51 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=47.3
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
.|++.++.++...-+++.|.++||+.+|++.+.+...+.++.+++..++..
T Consensus 136 ~L~~~~r~v~~l~~~~g~s~~eIA~~lgis~~~v~~~l~Rar~~Lr~~l~~ 186 (187)
T TIGR02948 136 ALPPKYRMVIVLKYMEDLSLKEISEILDLPVGTVKTRIHRGREALRKQLRH 186 (187)
T ss_pred hCCHHHhHHhhhHHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 578999999999899999999999999999999999999999999988765
No 256
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=89.66 E-value=1.3 Score=53.80 Aligned_cols=89 Identities=18% Similarity=0.094 Sum_probs=58.9
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
+-.|.-|..++..+. ++ + +.-+..|-|||.+..+++......| ..+.|.+|+.+=.+..++.+.+-++.+
T Consensus 102 ~~p~~VQ~~~~~~ll----~G---~--Iae~~TGeGKTla~~lp~~~~al~G-~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 102 QRHFDVQLMGGLALL----SG---R--LAEMQTGEGKTLTATLPAGTAALAG-LPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred CCCChHHHHHHHHHh----CC---C--eeeeeCCCCcHHHHHHHHHHHhhcC-CeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 344666666665443 22 2 6888999999999999888766667 479999999987777766665544444
Q ss_pred ccccc--------------ccceeeecCCCCCC
Q 003262 135 EYKEH--------------IDYDIVRSSNPDLR 153 (835)
Q Consensus 135 gy~e~--------------~dy~i~~st~p~~~ 153 (835)
|..-. ..-+|++.||.+|.
T Consensus 172 Glsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~ 204 (656)
T PRK12898 172 GLTVGCVVEDQSPDERRAAYGADITYCTNKELV 204 (656)
T ss_pred CCEEEEEeCCCCHHHHHHHcCCCEEEECCCchh
Confidence 33211 12256777777663
No 257
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=89.62 E-value=1.6 Score=54.47 Aligned_cols=67 Identities=12% Similarity=0.004 Sum_probs=45.8
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCCcEEEecCChHhHHHHHHHHHhh
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA---GYSNIFVTAPSPENLKTLFEFVCKG 130 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~---g~~nI~VTAPs~enl~tlFef~~kg 130 (835)
.|.=|.+++-.++ ++ +..+++.|+.|.|||+++.+.+- ++.. ....++.+.|+.+=+..+++-+.+-
T Consensus 16 PtpiQ~~~i~~il----~G--~~~v~~~apTGSGKTaa~aafll-~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~ 85 (844)
T TIGR02621 16 PFPWQLSLAERFV----AG--QPPESCSTPTGLGKTSIIAAWLL-AVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKI 85 (844)
T ss_pred CCHHHHHHHHHHH----cC--CCcceEecCCCCcccHHHHHhhc-cccccccccceEEEeCchHHHHHHHHHHHHHH
Confidence 7899999887643 33 34788899999999997632111 1211 1335667899999888887766443
No 258
>PRK05602 RNA polymerase sigma factor; Reviewed
Probab=89.61 E-value=0.92 Score=45.52 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=48.0
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
.|++.++.|++...+.+.+.++||+.+|++.+.|-..+.++.++|-+++...
T Consensus 128 ~L~~~~r~i~~l~~~~g~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~l~~~ 179 (186)
T PRK05602 128 ALPERQREAIVLQYYQGLSNIEAAAVMDISVDALESLLARGRRALRAQLADL 179 (186)
T ss_pred hCCHHHHHHhhHHHhcCCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999999999999888643
No 259
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=89.60 E-value=1.3 Score=49.96 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 59 LDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 59 ~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
..|.+++..|..++..++....++++|++|-||+++.= .+|..+
T Consensus 26 ~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~-~lA~~L 69 (351)
T PRK09112 26 FGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAF-HLANHI 69 (351)
T ss_pred cCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHH-HHHHHH
Confidence 46888889999999998887789999999999998764 444444
No 260
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=89.55 E-value=0.79 Score=52.97 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=26.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCC
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPS 116 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAPs 116 (835)
.++.|+|+.|.|||.++-.....+... |.+=++||+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 589999999999999885444444443 44446777754
No 261
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=89.49 E-value=0.82 Score=42.53 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=42.3
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDY 710 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~ 710 (835)
.|++.|..++....+++.++.+||+++|++.+.+-..+.++.+++-+.
T Consensus 110 ~L~~~~~~ii~~~~~~g~s~~eIA~~l~~s~~~v~~~~~~~~~kl~~~ 157 (158)
T TIGR02937 110 KLPEREREVLVLRYLEGLSYKEIAEILGISVGTVKRRLKRARKKLREL 157 (158)
T ss_pred hCCHHHHHHHhhHHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 478889999888888999999999999999999999999988877553
No 262
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=89.44 E-value=3.2 Score=43.87 Aligned_cols=61 Identities=21% Similarity=0.066 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHH------hccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC----CcEEEecCChHhHHH
Q 003262 61 QGKAVITFLDAI------LDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGY----SNIFVTAPSPENLKT 122 (835)
Q Consensus 61 QakAl~~~~~~i------~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~----~nI~VTAPs~enl~t 122 (835)
|..||.-+++.. ......+-.+|.-+-|-|||.....++..+...+- ..++|.+|+ .-+.+
T Consensus 2 Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~ 72 (299)
T PF00176_consen 2 QLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQ 72 (299)
T ss_dssp HHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHH
T ss_pred HHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhh
Confidence 777777666643 11222346778888999998766555554555432 248888888 44444
No 263
>PRK09639 RNA polymerase sigma factor SigX; Provisional
Probab=89.32 E-value=1.1 Score=43.81 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=47.0
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEIS 715 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~~ 715 (835)
.|++.|+.++.... ++.+..+||+.+|++.+.+-..+.++.+++-.++....
T Consensus 112 ~L~~~~r~il~l~~-~g~s~~eIA~~lgis~~tV~~~i~ra~~~Lr~~l~~~~ 163 (166)
T PRK09639 112 KMTERDRTVLLLRF-SGYSYKEIAEALGIKESSVGTTLARAKKKFRKIYEQME 163 (166)
T ss_pred cCCHHHHHHHHHHH-cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57888999998888 99999999999999999999999999999988887553
No 264
>PRK12542 RNA polymerase sigma factor; Provisional
Probab=89.22 E-value=1.2 Score=44.63 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=51.6
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEISSEEI 719 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~~~~~i 719 (835)
..|++.|+.|++...+++.|..+||+.+|++.+-+...+.++.+++-+++.+......
T Consensus 121 ~~L~~~~r~i~~l~~~~g~s~~EIA~~lgis~~tVk~~l~Rar~~Lr~~l~~~~~~~~ 178 (185)
T PRK12542 121 KELNESNRQVFKYKVFYNLTYQEISSVMGITEANVRKQFERARKRVQNMIGGIQHDEF 178 (185)
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 3588999999999999999999999999999999999999999999988876655444
No 265
>PRK09641 RNA polymerase sigma factor SigW; Provisional
Probab=89.14 E-value=1 Score=44.78 Aligned_cols=51 Identities=14% Similarity=0.088 Sum_probs=46.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
.|++.++.+|...-++++|+++||+.+|++.+.+-..+.++.+++-+++..
T Consensus 136 ~L~~~~r~il~l~~~~~~s~~eIA~~lgis~~~v~~~l~Rar~~Lr~~l~~ 186 (187)
T PRK09641 136 QLPEKYRTVIVLKYIEDLSLKEISEILDLPVGTVKTRIHRGREALRKQLRH 186 (187)
T ss_pred hCCHHHHHHhhhHHhhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 478889999988899999999999999999999999999999999888764
No 266
>TIGR02943 Sig70_famx1 RNA polymerase sigma-70 factor, TIGR02943 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=89.05 E-value=1.2 Score=45.20 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=48.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEIS 715 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~~ 715 (835)
.|++.|+.+++...++++|..+||+++|++.+-+...+.++.++|-+++....
T Consensus 131 ~L~~~~r~v~~l~~~~g~s~~EIA~~lgis~~tvk~rl~Rar~~Lr~~l~~~~ 183 (188)
T TIGR02943 131 HLPEQTARVFMMREVLGFESDEICQELEISTSNCHVLLYRARLSLRACLSINW 183 (188)
T ss_pred hCCHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888999999999999999999999999999999999999999988886543
No 267
>PRK09637 RNA polymerase sigma factor SigZ; Provisional
Probab=89.03 E-value=1.1 Score=45.17 Aligned_cols=52 Identities=19% Similarity=0.111 Sum_probs=48.2
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
.|++.|+.++...-+|+.++++||+.+|++.+-+...+.++.+++-+++...
T Consensus 106 ~L~~~~r~i~~l~~~~g~~~~EIA~~lgis~~tV~~~l~Rar~~Lr~~l~~~ 157 (181)
T PRK09637 106 ALPEKYAEALRLTELEGLSQKEIAEKLGLSLSGAKSRVQRGRVKLKELLEGC 157 (181)
T ss_pred hCCHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 5788999999999999999999999999999999999999999999888764
No 268
>PRK12523 RNA polymerase sigma factor; Reviewed
Probab=88.96 E-value=1.1 Score=44.35 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=47.0
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
.|++.|+.++....+++.|..+||+.+|++.+-+...+.++++++..++..
T Consensus 119 ~Lp~~~r~v~~L~~~~g~s~~EIA~~lgis~~tV~~~l~ra~~~~~~~l~~ 169 (172)
T PRK12523 119 KLSSKARAAFLYNRLDGMGHAEIAERLGVSVSRVRQYLAQGLRQCYIALYG 169 (172)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 478889999999999999999999999999999999999999999887753
No 269
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=88.91 E-value=0.15 Score=51.62 Aligned_cols=81 Identities=20% Similarity=0.202 Sum_probs=57.9
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHHHHh-cccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccc
Q 003262 417 RIVRIATHPSAMRLGYGSTAVELLTRYYE-GQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLR 495 (835)
Q Consensus 417 RIVRIAvhPd~q~mGyGsraL~~L~~~~~-g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~ 495 (835)
.|..|||.-.|||+|+|.+++.+-.+-.. +..+ ..| + +..|+
T Consensus 73 hItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A---------------~yv-------s-----LHVR~---------- 115 (193)
T KOG3235|consen 73 HITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEA---------------KYV-------S-----LHVRK---------- 115 (193)
T ss_pred eeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcc---------------eEE-------E-----Eeeec----------
Confidence 58999999999999999999987443211 1000 000 0 11111
Q ss_pred ccCCCCcceEEEecCCCHHHHHHHH-HCCCeEEEeeecccCCCCCceEEEEccCCc
Q 003262 496 ERQPEKLNYIGVSFGLTLDLFRFWR-KHKFAPFYVSQNANAVTGEHTCMVLKPLHS 550 (835)
Q Consensus 496 e~~~~~lDylGvSFGlT~~Ll~FWk-k~GF~pVylrq~~ne~TGEhS~IMlr~L~~ 550 (835)
. +...+..|+ -.||...-+-..+++ .||.+.-|-|.|+.
T Consensus 116 ---S------------NraAl~LY~~tl~F~v~eve~kYYa-dGedAyaM~~~L~~ 155 (193)
T KOG3235|consen 116 ---S------------NRAALHLYKNTLGFVVCEVEPKYYA-DGEDAYAMRKDLSV 155 (193)
T ss_pred ---c------------cHHHHHhhhhccceEEeeccccccc-ccHHHHHHHHHHHH
Confidence 1 577888999 789999999999985 89999999988864
No 270
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=88.89 E-value=1.2 Score=43.85 Aligned_cols=50 Identities=18% Similarity=0.136 Sum_probs=46.2
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.++.+++...+++.|..+||+++|++...+...+.++.+++-.++.
T Consensus 112 ~L~~~~r~v~~l~~~~g~s~~eIA~~lgis~~tV~~~l~Rar~~Lr~~l~ 161 (164)
T PRK12547 112 LLSADQREAIILIGASGFSYEDAAAICGCAVGTIKSRVSRARNRLQELLK 161 (164)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999887763
No 271
>PF05729 NACHT: NACHT domain
Probab=88.85 E-value=0.8 Score=43.75 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcC
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAG 106 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g 106 (835)
|+++|+|+.|.|||+++--.+..+...+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 4789999999999999976555555444
No 272
>PRK06851 hypothetical protein; Provisional
Probab=88.82 E-value=0.52 Score=53.57 Aligned_cols=58 Identities=19% Similarity=0.325 Sum_probs=45.3
Q ss_pred HHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCC-cEEEecCChHhHHHH
Q 003262 65 VITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYS-NIFVTAPSPENLKTL 123 (835)
Q Consensus 65 l~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~-nI~VTAPs~enl~tl 123 (835)
...+.+.+.++ ..+.++|||+.|.|||+++--.+..+...||. ..++|+++|+++.-|
T Consensus 18 f~s~~~~~~~~-~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~~slDgv 76 (367)
T PRK06851 18 FYSLYDSIIDG-ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSLDGV 76 (367)
T ss_pred hhhhhhhhccc-cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCCceeeE
Confidence 44566666554 46789999999999999999877777788875 578999999875443
No 273
>TIGR02954 Sig70_famx3 RNA polymerase sigma-70 factor, TIGR02954 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.
Probab=88.81 E-value=1.1 Score=44.14 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=46.4
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.++.|++...+++.|..+||+.+|++.+.+...+.++.+++-+++.
T Consensus 119 ~L~~~~r~i~~l~~~~g~s~~eiA~~lgis~~tv~~~l~Ra~~~Lr~~l~ 168 (169)
T TIGR02954 119 TLNDKYQTAIILRYYHDLTIKEIAEVMNKPEGTVKTYLHRALKKLKKRLE 168 (169)
T ss_pred hCCHHHhHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 47889999999999999999999999999999999999999999887763
No 274
>PRK09648 RNA polymerase sigma factor SigD; Reviewed
Probab=88.74 E-value=1.2 Score=44.72 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=45.7
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~ 711 (835)
.|++.|+.|++..-++++|+.+||+++|++.+.|...+.+++++|-+++
T Consensus 139 ~L~~~~r~i~~l~~~~g~s~~EIA~~lgis~~tV~~~l~Ra~~~Lr~~l 187 (189)
T PRK09648 139 TLPEKQREILILRVVVGLSAEETAEAVGSTPGAVRVAQHRALARLRAEI 187 (189)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999887765
No 275
>PRK12531 RNA polymerase sigma factor; Provisional
Probab=88.73 E-value=1.2 Score=45.14 Aligned_cols=50 Identities=16% Similarity=0.110 Sum_probs=45.9
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.++.|+...-+++.|..+||+++|++.+.+...+.++++++-.++.
T Consensus 141 ~Lp~~~r~v~~l~~~eg~s~~EIA~~lgis~~tVk~rl~ra~~~Lr~~l~ 190 (194)
T PRK12531 141 RLPKAQRDVLQAVYLEELPHQQVAEMFDIPLGTVKSRLRLAVEKLRHSMD 190 (194)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhh
Confidence 57888999999999999999999999999999999999999998887764
No 276
>PRK12526 RNA polymerase sigma factor; Provisional
Probab=88.73 E-value=1.2 Score=45.87 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=46.9
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.|+.++....++++|.++||+++|++.+.|-..+.++++++.+++.
T Consensus 153 ~L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~tV~~~l~Ra~~~Lr~~l~ 202 (206)
T PRK12526 153 KLPEAQQTVVKGVYFQELSQEQLAQQLNVPLGTVKSRLRLALAKLKVQMG 202 (206)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHh
Confidence 58899999999999999999999999999999999999999999988874
No 277
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=88.70 E-value=1.2 Score=48.67 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc-C-CCcEEEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAA-G-YSNIFVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~-g-~~nI~VTAPs 116 (835)
.+.++|+|+.|.|||+++...++.+... | ++=.+||+-+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3478999999999999998776666554 5 5445677654
No 278
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.64 E-value=1.8 Score=52.44 Aligned_cols=251 Identities=19% Similarity=0.305 Sum_probs=131.7
Q ss_pred HHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCC----cEEEecCChHhHHHHHHHHHhhhcc-cccccccc
Q 003262 67 TFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYS----NIFVTAPSPENLKTLFEFVCKGFNA-IEYKEHID 141 (835)
Q Consensus 67 ~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~----nI~VTAPs~enl~tlFef~~kgl~~-lgy~e~~d 141 (835)
.++.+|.++ ..++|+|..|.||++-+-.- +...||. .|-+|-|..-+.-.+-.-+.+-++. || ..+.
T Consensus 272 ell~av~e~---QVLiI~GeTGSGKTTQiPQy---L~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG--~eVG 343 (902)
T KOG0923|consen 272 ELLKAVKEH---QVLIIVGETGSGKTTQIPQY---LYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLG--HEVG 343 (902)
T ss_pred HHHHHHHhC---cEEEEEcCCCCCccccccHH---HHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccc--cccc
Confidence 355666663 58999999999999988643 3334543 4999999999988888777665543 22 1234
Q ss_pred ceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc-------ccCCCcEEEEecccC--CCHHHHHHhh----c--CC
Q 003262 142 YDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE-------KLAQVELLVIDEAAA--IPLPVVRSLL----G--PY 206 (835)
Q Consensus 142 y~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~-------~l~~adLLvIDEAAA--IPlpllk~Ll----~--~y 206 (835)
|.|-.. .|. ..+-.|.|+...-+. .|....++|||||-- +-.++|-.|+ . |-
T Consensus 344 YsIRFE------dcT-------SekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~Rpd 410 (902)
T KOG0923|consen 344 YSIRFE------DCT-------SEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPD 410 (902)
T ss_pred eEEEec------ccc-------CcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCc
Confidence 544221 111 123457787765443 345678999999974 3334444444 2 33
Q ss_pred --eEEEEeeccCCcccCCchhHHHHHHhhhcCCCCCCCcCCCccCCcee-EEEeccccccCCCCchHHHHHHhcCCCCCC
Q 003262 207 --LVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFK-KIELSESIRYAPGDPIESWLNGLLCLDVMN 283 (835)
Q Consensus 207 --~vflsSTi~GYEGTGR~fsLKl~~~L~~~~~~~~~~~~~~~~~r~~~-ei~L~ePIRya~gDPvE~WLn~lLcLDa~~ 283 (835)
++++|.|.. +=||-..+..-..= .--||.+. .|.-++ -..-|-+++-+-..|=.-.+.
T Consensus 411 LKllIsSAT~D---------AekFS~fFDdapIF-------~iPGRRyPVdi~Yt~---~PEAdYldAai~tVlqIH~tq 471 (902)
T KOG0923|consen 411 LKLLISSATMD---------AEKFSAFFDDAPIF-------RIPGRRYPVDIFYTK---APEADYLDAAIVTVLQIHLTQ 471 (902)
T ss_pred ceEEeeccccC---------HHHHHHhccCCcEE-------eccCcccceeeeccc---CCchhHHHHHHhhheeeEecc
Confidence 466666643 34566655432100 00011110 000000 012233333333333322221
Q ss_pred CCCCCCCCCCCCCcceEeeCcccccccCcCcHHHHHHHH-------HHHHhcccCCChhHHHH-hhc-CC-CceEEEEec
Q 003262 284 SIPHINRLPPPSECDLYYVNRDTLFSYHKESELFLQRMM-------ALYVSSHYKNSPNDLQL-MAD-AP-AHHLFVLLG 353 (835)
Q Consensus 284 ~~~~~~~~p~p~~c~l~~Vnrd~Lfs~h~~sE~fLq~~~-------aLlV~AHYkNsPnDLql-L~D-aP-ah~lfvL~~ 353 (835)
+..+--.+..-+|..- ...|.+-++|. -|.|.--|-|=|.|||. +-| .| +.+=.||..
T Consensus 472 ---------p~GDILVFltGQeEIE---t~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLAT 539 (902)
T KOG0923|consen 472 ---------PLGDILVFLTGQEEIE---TVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLAT 539 (902)
T ss_pred ---------CCccEEEEeccHHHHH---HHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEee
Confidence 1122223344444432 12333333333 34677889999999994 445 33 345556665
Q ss_pred CCcccCCCCCCeEEEE
Q 003262 354 PVDESKNQLPDILCVI 369 (835)
Q Consensus 354 p~~~~~~~lp~il~vi 369 (835)
.+.+..-+++.|.-||
T Consensus 540 NIAETSlTIdgI~yVi 555 (902)
T KOG0923|consen 540 NIAETSLTIDGIKYVI 555 (902)
T ss_pred cchhhceeecCeEEEe
Confidence 5666555556555544
No 279
>PRK12520 RNA polymerase sigma factor; Provisional
Probab=88.64 E-value=1.3 Score=44.60 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=47.7
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
.|++.|+.+++...+++.|..+||+++|++.+-|...+.++.++|-+++...
T Consensus 131 ~Lp~~~r~v~~l~~~~g~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~l~~~ 182 (191)
T PRK12520 131 RLPPRTGRVFMMREWLELETEEICQELQITATNAWVLLYRARMRLRECLDLH 182 (191)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999998887644
No 280
>COG1204 Superfamily II helicase [General function prediction only]
Probab=88.62 E-value=1.4 Score=54.73 Aligned_cols=139 Identities=24% Similarity=0.279 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccc
Q 003262 59 LDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKE 138 (835)
Q Consensus 59 ~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e 138 (835)
.-|+.||..... + ..-++|+|+.|.|||..-=|++-..+..|-.+++-++|...=+...++-.. -|+.+|++-
T Consensus 34 ~~qq~av~~~~~----~--~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~-~~~~~GirV 106 (766)
T COG1204 34 NPQQEAVEKGLL----S--DENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFS-RLEELGIRV 106 (766)
T ss_pred HHHHHHhhcccc----C--CCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhh-hHHhcCCEE
Confidence 457777654432 2 346899999999999877677777777665678889998887777776554 455565532
Q ss_pred ---cccce----------eeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHH--------
Q 003262 139 ---HIDYD----------IVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLP-------- 197 (835)
Q Consensus 139 ---~~dy~----------i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlp-------- 197 (835)
+-||+ |+-.|--.| ++...|+ |. -....++|||||+=.|.=+
T Consensus 107 ~~~TgD~~~~~~~l~~~~ViVtT~EK~-------Dsl~R~~-------~~---~~~~V~lvViDEiH~l~d~~RG~~lE~ 169 (766)
T COG1204 107 GISTGDYDLDDERLARYDVIVTTPEKL-------DSLTRKR-------PS---WIEEVDLVVIDEIHLLGDRTRGPVLES 169 (766)
T ss_pred EEecCCcccchhhhccCCEEEEchHHh-------hHhhhcC-------cc---hhhcccEEEEeeeeecCCcccCceehh
Confidence 11222 222211000 0000111 11 1236899999999998765
Q ss_pred HHHHhhc--C-C-eEEEEeeccCCcccC
Q 003262 198 VVRSLLG--P-Y-LVFLSSTVNGYEGTG 221 (835)
Q Consensus 198 llk~Ll~--~-y-~vflsSTi~GYEGTG 221 (835)
++.++.. + . +|=+|-|+.+||-.|
T Consensus 170 iv~r~~~~~~~~rivgLSATlpN~~evA 197 (766)
T COG1204 170 IVARMRRLNELIRIVGLSATLPNAEEVA 197 (766)
T ss_pred HHHHHHhhCcceEEEEEeeecCCHHHHH
Confidence 3444442 2 2 455999999998654
No 281
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=88.59 E-value=1.4 Score=45.26 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=29.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcC------CCcEEEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAG------YSNIFVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g------~~nI~VTAPs 116 (835)
...+.|+|+.|.|||+++-..++.+...| ..-+||++-+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 45889999999999997766655555444 5568998866
No 282
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=88.52 E-value=0.45 Score=48.13 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=22.3
Q ss_pred ccEEEEEeeCcccccCChHHHHHHH
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVEL 439 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~ 439 (835)
.+-|-..|+||+||.+|||..+|.-
T Consensus 101 ni~iHsl~Ihpa~rk~g~a~~Ll~~ 125 (190)
T KOG4144|consen 101 NIHIHSLAIHPAFRKQGRAPILLWR 125 (190)
T ss_pred ceeEEEEEecHHHHhcCcchhHHHH
Confidence 3788999999999999999998865
No 283
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional
Probab=88.44 E-value=1.2 Score=44.84 Aligned_cols=53 Identities=11% Similarity=0.010 Sum_probs=48.0
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEIS 715 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~~ 715 (835)
.|++.++.++...-+++.|..+||+.+|++.+.+-..+.++.++|-.+|..++
T Consensus 138 ~L~~~~r~v~~l~~~~g~s~~eIA~~lgis~~tv~~~l~Rar~~Lr~~l~~~~ 190 (193)
T PRK11923 138 QLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAIDKALQPLL 190 (193)
T ss_pred hCCHHHhHHHhhHHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47788888888888999999999999999999999999999999999998754
No 284
>PRK12539 RNA polymerase sigma factor; Provisional
Probab=88.39 E-value=1.3 Score=44.56 Aligned_cols=50 Identities=8% Similarity=0.085 Sum_probs=46.6
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.|+.++....+++.|.++||+++|+|.+-+-..+.++.++|-+++.
T Consensus 131 ~L~~~~r~v~~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 180 (184)
T PRK12539 131 RLPEKMRLAIQAVKLEGLSVAEAATRSGMSESAVKVSVHRGLKALAALIG 180 (184)
T ss_pred hCCHHHHHHHHHHHHcCCcHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHh
Confidence 58899999999999999999999999999999999999999999988774
No 285
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=88.34 E-value=2.4 Score=48.39 Aligned_cols=54 Identities=31% Similarity=0.408 Sum_probs=38.6
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-----cCCCcEEEecCCh
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA-----AGYSNIFVTAPSP 117 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~-----~g~~nI~VTAPs~ 117 (835)
.+...|.=|+..+++ -. =..|+|+|.-|.|||. | |+|+++. .-|.+|+||=|.+
T Consensus 228 prn~eQ~~ALdlLld----~d-I~lV~L~G~AGtGKTl-L--ALaAgleqv~e~~~y~KiiVtRp~v 286 (436)
T COG1875 228 PRNAEQRVALDLLLD----DD-IDLVSLGGKAGTGKTL-L--ALAAGLEQVLERKRYRKIIVTRPTV 286 (436)
T ss_pred cccHHHHHHHHHhcC----CC-CCeEEeeccCCccHhH-H--HHHHHHHHHHHHhhhceEEEecCCc
Confidence 367788888876655 11 2479999999999986 3 3444442 2488999999975
No 286
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=88.32 E-value=1.5 Score=53.43 Aligned_cols=65 Identities=25% Similarity=0.276 Sum_probs=53.1
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CC--CcEEEecCChHhHHHHHHHHHhh
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA-GY--SNIFVTAPSPENLKTLFEFVCKG 130 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~-g~--~nI~VTAPs~enl~tlFef~~kg 130 (835)
.+.+|.+||.. ...++.++|+.|.|||++|=--+|.++.. |. .+|++.+.+..+.+.+-+-+.+-
T Consensus 3 Ln~~Q~~av~~---------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 3 LNPGQQQAVEF---------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCHHHHHHHhC---------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 57789888742 13578899999999999999999999974 64 58999999999999987776543
No 287
>PRK06759 RNA polymerase factor sigma-70; Validated
Probab=88.31 E-value=1.2 Score=43.00 Aligned_cols=46 Identities=11% Similarity=0.224 Sum_probs=42.9
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLT 708 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~ 708 (835)
.|++.|+.++....++++|..|||+.+|++.+.|-..+.++++++-
T Consensus 106 ~L~~~~r~ii~l~~~~~~s~~EIA~~l~is~~tV~~~~~ra~~~Lr 151 (154)
T PRK06759 106 VLDEKEKYIIFERFFVGKTMGEIALETEMTYYQVRWIYRQALEKMR 151 (154)
T ss_pred hCCHHHHHHHHHHHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999998874
No 288
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=88.28 E-value=1.3 Score=54.58 Aligned_cols=159 Identities=21% Similarity=0.182 Sum_probs=86.9
Q ss_pred ccccCCcHHHHHHHHHHHHHHhccCCCc-EEEEEcCCCCCHHHHH-HHHHHHHHHc--CCCcEEEecCChHhHHHHHHHH
Q 003262 52 LIKKCSTLDQGKAVITFLDAILDKTLRS-TVALLAARGRGKSAAL-GLAIAGAIAA--GYSNIFVTAPSPENLKTLFEFV 127 (835)
Q Consensus 52 Lv~~~~T~DQakAl~~~~~~i~ek~~r~-~v~LTA~RGRGKSAaL-GlaiA~ai~~--g~~nI~VTAPs~enl~tlFef~ 127 (835)
++.--...-|.+++..... ...++ .++|.|+.|.|||.|- .+|.+.+... ..++||-+=|-...++.++.-+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~ 266 (733)
T COG1203 191 FIEHEGYELQEKALELILR----LEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRA 266 (733)
T ss_pred ccCchhhHHHHHHHHHHHh----cccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHH
Confidence 3344446678887765544 23345 8999999999999653 3333333332 4678999999999998888777
Q ss_pred Hhhhcccccccc---c-------cce-----eeecCCCCCCcceeEeeeeeccceeEEeeCCcccc---ccCCCcEEEEe
Q 003262 128 CKGFNAIEYKEH---I-------DYD-----IVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE---KLAQVELLVID 189 (835)
Q Consensus 128 ~kgl~~lgy~e~---~-------dy~-----i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~---~l~~adLLvID 189 (835)
..-+...+-..+ - .+. +..+++-.+.+...-+.+...+.+.+.+.-+.... .+. -.++|.|
T Consensus 267 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~S~vIlD 345 (733)
T COG1203 267 KEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLL-TSLVILD 345 (733)
T ss_pred HhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHH-hhchhhc
Confidence 643322221111 1 011 22222222223333333333332222111122111 122 3589999
Q ss_pred cccCCCHH-HHHHhh---------cCCeEEEEeecc
Q 003262 190 EAAAIPLP-VVRSLL---------GPYLVFLSSTVN 215 (835)
Q Consensus 190 EAAAIPlp-llk~Ll---------~~y~vflsSTi~ 215 (835)
|+=++|-. ++..++ |..+|+||.|..
T Consensus 346 E~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP 381 (733)
T COG1203 346 EVHLYADETMLAALLALLEALAEAGVPVLLMSATLP 381 (733)
T ss_pred cHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 99888877 443333 456888999954
No 289
>PRK09646 RNA polymerase sigma factor SigK; Reviewed
Probab=88.21 E-value=1.3 Score=45.00 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=46.4
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.|+.+|+...+++.|..+||++||++.+.|...+.++.++|-+++.
T Consensus 142 ~L~~~~r~vl~l~~~~~~s~~EIA~~Lgis~~tVk~~l~ra~~~Lr~~l~ 191 (194)
T PRK09646 142 ALTDTQRESVTLAYYGGLTYREVAERLAVPLGTVKTRMRDGLIRLRDCLG 191 (194)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHhCCChHhHHHHHHHHHHHHHHHhc
Confidence 58899999999999999999999999999999999999999999888774
No 290
>PRK12527 RNA polymerase sigma factor; Reviewed
Probab=88.17 E-value=1.6 Score=42.64 Aligned_cols=50 Identities=12% Similarity=0.047 Sum_probs=46.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.++.++....+++.|..+||+++|++.+-+-..+.++++++-+++.
T Consensus 105 ~L~~~~r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~l~ra~~~Lr~~l~ 154 (159)
T PRK12527 105 ELPPACRDSFLLRKLEGLSHQQIAEHLGISRSLVEKHIVNAMKHCRVRMR 154 (159)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999988876
No 291
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=88.16 E-value=1.4 Score=54.51 Aligned_cols=61 Identities=21% Similarity=0.186 Sum_probs=43.0
Q ss_pred ccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCcEEEecCC
Q 003262 54 KKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-YSNIFVTAPS 116 (835)
Q Consensus 54 ~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g-~~nI~VTAPs 116 (835)
....-.-|..|+-.++++++.++.| +.|.=+.|.||+-+-=-.|-.++..| ..+|+-=|=.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~r--aLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR 224 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNR--ALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADR 224 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCce--EEEEEecCCCcceeHHHHHHHHHhcchhheeeEEech
Confidence 3445567999999999999988765 56777899999965433344566666 5677544443
No 292
>PRK12514 RNA polymerase sigma factor; Provisional
Probab=88.01 E-value=1.4 Score=43.94 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=45.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.++.+++...+++.|.++||++||++.+.+-..+.++.++|-+++.
T Consensus 129 ~L~~~~r~i~~l~~~~g~s~~eIA~~lgis~~tV~~~l~Rar~~Lr~~l~ 178 (179)
T PRK12514 129 ELEKDRAAAVRRAYLEGLSYKELAERHDVPLNTMRTWLRRSLLKLRECLS 178 (179)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCCChHHHHHHHHHHHHHHHHHhc
Confidence 47888999999999999999999999999999999999999999887763
No 293
>PRK12546 RNA polymerase sigma factor; Provisional
Probab=88.00 E-value=1.2 Score=45.52 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=47.8
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
.|++.|+.+++...+++.|.++||+.||++.+.+-..+.++.++|-+++...
T Consensus 113 ~Lp~~~r~v~~L~~~~g~s~~EIA~~LgiS~~tVk~~l~Rar~~Lr~~l~~~ 164 (188)
T PRK12546 113 QLPDEQREALILVGASGFSYEEAAEMCGVAVGTVKSRANRARARLAELLQLE 164 (188)
T ss_pred hCCHHHhHHhhhHHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 5789999999999999999999999999999999999999999998888644
No 294
>PRK13919 putative RNA polymerase sigma E protein; Provisional
Probab=87.87 E-value=1.4 Score=43.94 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=46.4
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.++.++....+++.|..+||+++|++.+.|-..+.++.++|-.++.
T Consensus 135 ~L~~~~r~vl~l~~~~~~s~~eIA~~lgis~~~V~~~l~ra~~~Lr~~l~ 184 (186)
T PRK13919 135 ALSPEERRVIEVLYYQGYTHREAAQLLGLPLGTLKTRARRALSRLKEVLR 184 (186)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhc
Confidence 48899999999999999999999999999999999999999999887764
No 295
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=87.85 E-value=4.6 Score=43.16 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=17.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGLAIAG 101 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ 101 (835)
..++|+|++|.|||++.-+.+-.
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999977554333
No 296
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=87.84 E-value=1.7 Score=53.41 Aligned_cols=66 Identities=18% Similarity=0.117 Sum_probs=54.6
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CC--CcEEEecCChHhHHHHHHHHHhhh
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA-GY--SNIFVTAPSPENLKTLFEFVCKGF 131 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~-g~--~nI~VTAPs~enl~tlFef~~kgl 131 (835)
.|.+|.+||.. ...++.|.|+.|.|||++|=--+|.++.. |. .+|++.+-+..+++.+-+-+.+-+
T Consensus 10 Ln~~Q~~av~~---------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 10 LNDKQREAVAA---------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred cCHHHHHHHhC---------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 68899998741 13588999999999999999889999974 53 589999999999999888776543
No 297
>PRK12530 RNA polymerase sigma factor; Provisional
Probab=87.81 E-value=1.6 Score=44.36 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=47.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
.|++.|+.+++..-+++.|..+||+.+|++.+.|-..+.++.++|-+++..
T Consensus 134 ~Lp~~~R~v~~L~~~~g~s~~EIA~~lgis~~tVk~~l~RAr~~Lr~~l~~ 184 (189)
T PRK12530 134 HLPAQQARVFMMREYLELSSEQICQECDISTSNLHVLLYRARLQLQACLSK 184 (189)
T ss_pred hCCHHHHHHHhHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999998888754
No 298
>PRK09415 RNA polymerase factor sigma C; Reviewed
Probab=87.78 E-value=1.4 Score=44.18 Aligned_cols=51 Identities=18% Similarity=0.113 Sum_probs=47.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
.|++.|+.+++...+++.|..+||+.+|++.+.+...+.++.+++-.++.+
T Consensus 127 ~L~~~~r~v~~l~~~~g~s~~EIA~~l~is~~tv~~~l~Ra~~~Lr~~l~~ 177 (179)
T PRK09415 127 SLPIKYREVIYLFYYEELSIKEIAEVTGVNENTVKTRLKKAKELLKKGLEE 177 (179)
T ss_pred hCCHHHhhHhHhHHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999999999999999887754
No 299
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.76 E-value=1 Score=52.47 Aligned_cols=65 Identities=22% Similarity=0.231 Sum_probs=50.0
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC-----CC--cEEEecCChHhHHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-----YS--NIFVTAPSPENLKTLFEFVC 128 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g-----~~--nI~VTAPs~enl~tlFef~~ 128 (835)
.|+-|+.++--++. +.-|++-|..|.||+.|-=+-+-..|..+ .. .-+|-||+.|=...+++-+.
T Consensus 29 mTpVQa~tIPlll~-------~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~ 100 (567)
T KOG0345|consen 29 MTPVQAATIPLLLK-------NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQ 100 (567)
T ss_pred cCHHHHhhhHHHhc-------CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHH
Confidence 68999999876655 45799999999999999877777777321 12 34888999998888777654
No 300
>PRK12534 RNA polymerase sigma factor; Provisional
Probab=87.72 E-value=1.5 Score=44.04 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=46.0
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.++.++....+++.|..+||+.||++.+.+...+.++.++|-.++.
T Consensus 137 ~L~~~~r~i~~l~~~~g~s~~eIA~~lgis~~~v~~~l~Rar~~Lr~~l~ 186 (187)
T PRK12534 137 ELEPPRSELIRTAFFEGITYEELAARTDTPIGTVKSWIRRGLAKLKACLE 186 (187)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHhCCChhHHHHHHHHHHHHHHHHHc
Confidence 47888999999999999999999999999999999999999999988764
No 301
>PRK12516 RNA polymerase sigma factor; Provisional
Probab=87.71 E-value=1.6 Score=44.42 Aligned_cols=52 Identities=15% Similarity=0.101 Sum_probs=47.4
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
.|++.|+.+++..-+++.|..+||+.||++.+.+...+.++.++|-+++..-
T Consensus 116 ~Lp~~~r~i~~L~~~~g~s~~EIA~~Lgis~~tVk~~l~Rar~~Lr~~l~~~ 167 (187)
T PRK12516 116 QLPDDQREAIILVGASGFAYEEAAEICGCAVGTIKSRVNRARQRLQEILQIE 167 (187)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 4788999999999999999999999999999999999999999998888643
No 302
>PRK12528 RNA polymerase sigma factor; Provisional
Probab=87.71 E-value=1.2 Score=43.50 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=43.7
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTD 709 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~ 709 (835)
.|++.|+.+++..-+++.|..+||+.+|++.+.+...+.++.+++..
T Consensus 113 ~L~~~~r~v~~L~~~~g~s~~EIA~~l~is~~tV~~~l~ra~~~~~~ 159 (161)
T PRK12528 113 GLPPLVKRAFLLAQVDGLGYGEIATELGISLATVKRYLNKAAMRCYF 159 (161)
T ss_pred HCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999988764
No 303
>PRK12522 RNA polymerase sigma factor; Provisional
Probab=87.67 E-value=1.6 Score=43.23 Aligned_cols=53 Identities=9% Similarity=0.024 Sum_probs=48.3
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEIS 715 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~~ 715 (835)
.|++.++.+++..-++++|..+||+.+|++.+.+-..+.++.++|-+++...+
T Consensus 119 ~L~~~~r~i~~l~~~~~~s~~EIA~~lgis~~tV~~~l~Ra~~~Lr~~l~~~~ 171 (173)
T PRK12522 119 LLNEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAKKQMREHLEGFV 171 (173)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888899999999999999999999999999999999999999998887654
No 304
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=87.49 E-value=1.5 Score=53.88 Aligned_cols=116 Identities=18% Similarity=0.292 Sum_probs=76.3
Q ss_pred HHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCC--------cEEEecCChHhHHHHHHHHHhhhccccccc
Q 003262 67 TFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYS--------NIFVTAPSPENLKTLFEFVCKGFNAIEYKE 138 (835)
Q Consensus 67 ~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~--------nI~VTAPs~enl~tlFef~~kgl~~lgy~e 138 (835)
.++++|.+ +-.|+|+|..|.||+|-+-..+-.| ||. =|-||-|..-++-.+-+-+.-.|..+ ..
T Consensus 263 ~IMEaIn~---n~vvIIcGeTGsGKTTQvPQFLYEA---Gf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~--~~ 334 (1172)
T KOG0926|consen 263 RIMEAINE---NPVVIICGETGSGKTTQVPQFLYEA---GFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVL--GS 334 (1172)
T ss_pred HHHHHhhc---CCeEEEecCCCCCccccchHHHHHc---ccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccC--cc
Confidence 45677755 4589999999999999987665433 432 38999999988888777776555443 33
Q ss_pred cccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc-------ccCCCcEEEEecccC--CCHHHHHHhh
Q 003262 139 HIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE-------KLAQVELLVIDEAAA--IPLPVVRSLL 203 (835)
Q Consensus 139 ~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~-------~l~~adLLvIDEAAA--IPlpllk~Ll 203 (835)
.+.|.|-... ..+.--.|.|+.-.-+. .|..+.++|||||-- +-.++|-.||
T Consensus 335 eVsYqIRfd~-------------ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmL 395 (1172)
T KOG0926|consen 335 EVSYQIRFDG-------------TIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGML 395 (1172)
T ss_pred ceeEEEEecc-------------ccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHH
Confidence 4566654332 12334467888755442 245688999999963 4445555544
No 305
>PHA00729 NTP-binding motif containing protein
Probab=87.41 E-value=2.5 Score=45.22 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=19.5
Q ss_pred HHHHHhccCCCcEEEEEcCCCCCHHHHH
Q 003262 68 FLDAILDKTLRSTVALLAARGRGKSAAL 95 (835)
Q Consensus 68 ~~~~i~ek~~r~~v~LTA~RGRGKSAaL 95 (835)
+++.+.+... ..++|||..|.|||++-
T Consensus 8 ~~~~l~~~~f-~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 8 IVSAYNNNGF-VSAVIFGKQGSGKTTYA 34 (226)
T ss_pred HHHHHhcCCe-EEEEEECCCCCCHHHHH
Confidence 4455555544 36899999999999853
No 306
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=87.41 E-value=1.2 Score=42.49 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=25.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHH
Q 003262 80 TVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLF 124 (835)
Q Consensus 80 ~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlF 124 (835)
+|+|+|+.|.|||++.=.. |.++ ++.-+.|.-++--....|+
T Consensus 1 ~vlL~G~~G~GKt~l~~~l-a~~~--~~~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLAREL-AALL--GRPVIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEEEEESSSSSHHHHHHHH-HHHH--TCEEEEEE-TTTSTHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH-HHHh--hcceEEEEeccccccccce
Confidence 5899999999999987543 3333 5544455555444443443
No 307
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=87.39 E-value=7.8 Score=39.04 Aligned_cols=35 Identities=14% Similarity=0.069 Sum_probs=26.7
Q ss_pred HHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Q 003262 68 FLDAILDKTLRSTVALLAARGRGKSAALGLAIAGA 102 (835)
Q Consensus 68 ~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~a 102 (835)
|.+.+..++....+++.|+.|.||+++.=..+..+
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 55667777777789999999999999775544443
No 308
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.37 E-value=6.3 Score=45.05 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
.|..++..+..++..++....++++|++|.||+++--+ +|..+
T Consensus 20 Gq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~-~a~~l 62 (397)
T PRK14955 20 AQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARV-FAKAV 62 (397)
T ss_pred ChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHH-HHHHh
Confidence 47777777888888877777799999999999986543 34444
No 309
>PRK12537 RNA polymerase sigma factor; Provisional
Probab=87.33 E-value=1.5 Score=44.05 Aligned_cols=49 Identities=10% Similarity=0.148 Sum_probs=45.4
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~ 711 (835)
.|++.|+.+++...+++.|.++||+++|++.+.+-..+.++++++-.++
T Consensus 133 ~L~~~~r~i~~l~~~~~~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 181 (182)
T PRK12537 133 QLEPARRNCILHAYVDGCSHAEIAQRLGAPLGTVKAWIKRSLKALRECM 181 (182)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999999999999988765
No 310
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=87.14 E-value=1.7 Score=52.51 Aligned_cols=66 Identities=27% Similarity=0.293 Sum_probs=52.4
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CC--CcEEEecCChHhHHHHHHHHHhhh
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA-GY--SNIFVTAPSPENLKTLFEFVCKGF 131 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~-g~--~nI~VTAPs~enl~tlFef~~kgl 131 (835)
.|.+|.+|+.. ...++++.|+.|.|||++|=--++.++.. |+ .+|++.+.+..+...+-+-+.+.+
T Consensus 2 Ln~~Q~~av~~---------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY---------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC---------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 46788887641 13478999999999999999999999964 53 579999999999998887776544
No 311
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=87.09 E-value=2.4 Score=52.76 Aligned_cols=55 Identities=11% Similarity=0.049 Sum_probs=43.0
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccccc
Q 003262 82 ALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYK 137 (835)
Q Consensus 82 ~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~ 137 (835)
+..+..|-|||.+..++++.....|. .+.|.+|+.+=++.-++.+..-++.+|+.
T Consensus 95 Iaem~TGeGKTL~a~lp~~l~al~G~-~v~VvTpt~~LA~qd~e~~~~l~~~lGl~ 149 (790)
T PRK09200 95 IAEMQTGEGKTLTATMPLYLNALEGK-GVHLITVNDYLAKRDAEEMGQVYEFLGLT 149 (790)
T ss_pred eeeecCCCcchHHHHHHHHHHHHcCC-CeEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 88999999999999988775555564 78999999988777777766666666543
No 312
>PRK12545 RNA polymerase sigma factor; Provisional
Probab=87.08 E-value=1.8 Score=44.42 Aligned_cols=50 Identities=24% Similarity=0.271 Sum_probs=46.9
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.|+.+++..-++++|..+||+.+|++.+-+-..+.++.++|-++|.
T Consensus 139 ~Lp~~~r~v~~L~~~eg~s~~EIA~~lgis~~tVk~~l~RAr~~Lr~~l~ 188 (201)
T PRK12545 139 HLPEQIGRVFMMREFLDFEIDDICTELTLTANHCSVLLYRARTRLRTCLS 188 (201)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999988885
No 313
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=87.05 E-value=1.8 Score=45.57 Aligned_cols=44 Identities=9% Similarity=0.160 Sum_probs=30.4
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHH
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAG 101 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ 101 (835)
-.|..+.+++..+...+..+ ...++|+|+.|.|||+++-..+..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~--~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQR--EGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcC--CCEEEEEcCCCCCHHHHHHHHHHh
Confidence 35666777766555544322 347899999999999999765443
No 314
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=87.01 E-value=5.4 Score=53.66 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=77.7
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCC-CCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARG-RGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 135 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RG-RGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lg 135 (835)
.+.+|..|+..+.. ......+|++.-| -|+.++|.-.+..+-..|| .|.+-||+-.++++|-+= .|+
T Consensus 414 ~~~~~~~av~~~~q-----~~~~~~il~g~~G~aG~g~~l~~l~~~a~~~G~-~V~glAPt~~a~~~L~~~--~gi---- 481 (1747)
T PRK13709 414 RTAGYSDAVSVLAQ-----DRPSLAIVSGQGGAAGQRERVAELVMMAREQGR-EVQILAADRRSQMNLKQD--ERL---- 481 (1747)
T ss_pred cchhhhHHHHHHhc-----ccCcEEEEEcCCcchHHHHHHHHHHHHHHhCCc-EEEEEeCcHHHHHHHHHh--cCC----
Confidence 35567666654322 2235788998888 4777777766666667787 799999999999888532 111
Q ss_pred ccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhhc------CCeEE
Q 003262 136 YKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG------PYLVF 209 (835)
Q Consensus 136 y~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~------~y~vf 209 (835)
+.. .+.+ -+|+... ..+..-+++|||||-.++..-+..|+. ..+||
T Consensus 482 -~~~----Tva~---------------------~~~l~~~--~~~~~~~ilIVDEAg~lsar~m~~Ll~~A~~~~arvVl 533 (1747)
T PRK13709 482 -SGE----LITG---------------------RRQLQEG--MAFTPGSTLIVDQAEKLSLKETLTLLDGAARHNVQVLI 533 (1747)
T ss_pred -Ccc----eeeh---------------------hhhhccc--cCCCCCcEEEEECCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence 110 0100 0011111 112244799999999999998888884 22455
Q ss_pred EEeeccCCcccCCchh
Q 003262 210 LSSTVNGYEGTGRSLS 225 (835)
Q Consensus 210 lsSTi~GYEGTGR~fs 225 (835)
+ .+..=. |.|..|.
T Consensus 534 l-gd~~Q~-aAG~pf~ 547 (1747)
T PRK13709 534 L-DSGQRT-GTGSALM 547 (1747)
T ss_pred E-CCcccc-cccCHHH
Confidence 5 444444 5788773
No 315
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=86.96 E-value=4.1 Score=50.39 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=20.1
Q ss_pred HHHHHhccCCCcEEEEEcCCCCCHHHHHH
Q 003262 68 FLDAILDKTLRSTVALLAARGRGKSAALG 96 (835)
Q Consensus 68 ~~~~i~ek~~r~~v~LTA~RGRGKSAaLG 96 (835)
+...+..++. ..++|+|++|.|||++.-
T Consensus 43 L~~~i~~~~~-~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 43 LRRAIKADRV-GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred HHHHHhcCCC-ceEEEECCCCCCHHHHHH
Confidence 3444444443 478999999999998764
No 316
>PRK08301 sporulation sigma factor SigE; Reviewed
Probab=86.95 E-value=1.7 Score=45.46 Aligned_cols=53 Identities=9% Similarity=0.090 Sum_probs=46.8
Q ss_pred CCccHHHHHHHHHHH----hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 662 VTLSYVQAAVLLYIG----MLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 662 ~~Ls~~q~~iLla~g----LQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
..|++.|+.|+...- ++++|..+||+.+|++.+.|-..+.++++++-+.+..+
T Consensus 177 ~~Lp~~~R~v~~L~y~l~~~eg~s~~EIA~~lgis~~tVk~~~~rA~~~Lr~~l~~~ 233 (234)
T PRK08301 177 KKLSDREKQIMELRFGLNGGEEKTQKEVADMLGISQSYISRLEKRIIKRLKKEINKM 233 (234)
T ss_pred HhCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 357888888888776 79999999999999999999999999999998887655
No 317
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoE. This protein may be called sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.
Probab=86.90 E-value=1.6 Score=43.61 Aligned_cols=53 Identities=9% Similarity=-0.006 Sum_probs=47.6
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
..|++.++.++.-.-+++.+.++||+.+|++.+.+-..+.++.++|-+++..+
T Consensus 137 ~~L~~~~r~v~~l~~~~~~s~~EIA~~lgis~~tv~~~l~rar~~Lr~~l~~~ 189 (190)
T TIGR02939 137 EALPEDLRTAITLRELEGLSYEDIARIMDCPVGTVRSRIFRAREAIAIRLRPL 189 (190)
T ss_pred HcCCHHHhhhhhhhhhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhcc
Confidence 35788899999888899999999999999999999999999999999888644
No 318
>PRK09644 RNA polymerase sigma factor SigM; Provisional
Probab=86.86 E-value=1.9 Score=42.44 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=46.3
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
.|++.|+.+++...+++.+..+||+++|++.+.+-..+.++.+++-.++..
T Consensus 108 ~L~~~~r~v~~l~~~~g~s~~eIA~~lgis~~tv~~~l~Rar~~Lr~~l~~ 158 (165)
T PRK09644 108 TLPVIEAQAILLCDVHELTYEEAASVLDLKLNTYKSHLFRGRKRLKALLKE 158 (165)
T ss_pred hCCHHHHHHHHhHHHhcCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 578899999999999999999999999999999999999999888877754
No 319
>PRK04217 hypothetical protein; Provisional
Probab=86.85 E-value=2.5 Score=40.51 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=48.1
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
..|+..|..++..+..++.|.++||+.+|++.+.+-..++++.++|..++..-
T Consensus 41 ~~Lt~eereai~l~~~eGlS~~EIAk~LGIS~sTV~r~L~RArkkLre~L~~~ 93 (110)
T PRK04217 41 IFMTYEEFEALRLVDYEGLTQEEAGKRMGVSRGTVWRALTSARKKVAQMLVEG 93 (110)
T ss_pred ccCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 67999999999999999999999999999999999999999999998877544
No 320
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=86.85 E-value=9.9 Score=37.53 Aligned_cols=81 Identities=22% Similarity=0.305 Sum_probs=50.6
Q ss_pred cCcHHHHHHHHHHHHhcccCCChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCC
Q 003262 312 KESELFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQ 391 (835)
Q Consensus 312 ~~sE~fLq~~~aLlV~AHYkNsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~R 391 (835)
..|+.-+..+.=|| -| -+|..|+..+| ..|.||+..= | ..+||++.|..+|.
T Consensus 9 ~ls~Qd~iDL~KIw--p~--~~~~~l~~~l~-~~~~l~aArF----N----dRlLgAv~v~~~~~--------------- 60 (128)
T PF12568_consen 9 TLSEQDRIDLAKIW--PQ--QDPEQLEQWLD-EGHRLFAARF----N----DRLLGAVKVTISGQ--------------- 60 (128)
T ss_dssp S--HHHHHHHHHH---TT--S-----------SSEEEEEEEE----T----TEEEEEEEEEEETT---------------
T ss_pred CCCHHHHHHHHHhC--CC--CCHHHHHHHhc-cCCeEEEEEe----c----hheeeeEEEEEcCc---------------
Confidence 34555555555555 33 35667776665 7899999862 1 36899999998763
Q ss_pred CCCCchhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHH
Q 003262 392 PSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRY 443 (835)
Q Consensus 392 p~GdLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~ 443 (835)
.+++..+.|+|-=||+|.|.++|+.+.+-
T Consensus 61 -----------------------~~~L~~l~VRevTRrRGVG~yLlee~~rq 89 (128)
T PF12568_consen 61 -----------------------QAELSDLCVREVTRRRGVGLYLLEEVLRQ 89 (128)
T ss_dssp -----------------------EEEEEEEEE-TT-SSSSHHHHHHHHHHHH
T ss_pred -----------------------ceEEeeEEEeeccccccHHHHHHHHHHHH
Confidence 37899999999999999999999987764
No 321
>PRK12540 RNA polymerase sigma factor; Provisional
Probab=86.84 E-value=1.9 Score=43.69 Aligned_cols=52 Identities=19% Similarity=0.163 Sum_probs=47.3
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
.|++.++.+++..-+++.|..+||+.||++.+-+...+.++.++|-+++..-
T Consensus 111 ~Lp~~~R~v~~L~~~~g~s~~EIA~~Lgis~~tV~~~l~RAr~~Lr~~l~~~ 162 (182)
T PRK12540 111 KLPQDQREALILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLSALLYVD 162 (182)
T ss_pred hCCHHHHHHhhHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788999999999999999999999999999999999999999998887643
No 322
>PRK12543 RNA polymerase sigma factor; Provisional
Probab=86.84 E-value=2.1 Score=42.77 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=48.3
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEIS 715 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~~ 715 (835)
.|++.++.|++..-+++.|..+||+.+|++.+-+...+.+++.++-++|...-
T Consensus 117 ~Lp~~~r~i~~l~~~e~~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~~ 169 (179)
T PRK12543 117 KLPYKLRQVIILRYLHDYSQEEIAQLLQIPIGTVKSRIHAALKKLRQKEQIEE 169 (179)
T ss_pred hCCHHHHHHHHHHHHccCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999988887653
No 323
>TIGR02989 Sig-70_gvs1 RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).
Probab=86.79 E-value=1.4 Score=42.70 Aligned_cols=49 Identities=16% Similarity=0.244 Sum_probs=44.3
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDY 710 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~ 710 (835)
..|++.|+.++...-+.+.+..+||+.+|++.+.+-..+.++.++|-.+
T Consensus 110 ~~L~~~~r~v~~l~~~~g~~~~eIA~~l~is~~tv~~~l~Rar~~Lr~~ 158 (159)
T TIGR02989 110 EKLPERQRELLQLRYQRGVSLTALAEQLGRTVNAVYKALSRLRVRLRDC 158 (159)
T ss_pred HHCCHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Confidence 3589999999999999999999999999999999999999888887654
No 324
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=86.78 E-value=2 Score=42.47 Aligned_cols=50 Identities=18% Similarity=0.094 Sum_probs=46.3
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.++.+++..-+++.|..+||+.||++.+-+-..+.++.++|-+++.
T Consensus 118 ~L~~~~r~vl~L~~~~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 167 (173)
T PRK09645 118 QLSPEHRAVLVRSYYRGWSTAQIAADLGIPEGTVKSRLHYALRALRLALQ 167 (173)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhh
Confidence 47889999999999999999999999999999999999999998888775
No 325
>PRK12525 RNA polymerase sigma factor; Provisional
Probab=86.73 E-value=1.9 Score=42.69 Aligned_cols=49 Identities=18% Similarity=0.124 Sum_probs=45.0
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~ 711 (835)
.|++.++.+++-..++++|.++||++||++.+-+...++++++.+...+
T Consensus 118 ~L~~~~r~v~~L~~~eg~s~~EIA~~l~is~~tV~~~l~ra~~~~~~~~ 166 (168)
T PRK12525 118 GLSGKARAAFLMSQLEGLTYVEIGERLGVSLSRIHQYMVEAFKCCYQGF 166 (168)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 5788999999999999999999999999999999999999998887665
No 326
>TIGR02983 SigE-fam_strep RNA polymerase sigma-70 factor, sigma-E family. This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.
Probab=86.72 E-value=1.7 Score=42.30 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=45.8
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.++.+++...+++.|..+||+.+|++.+.|-..+.++.++|-+++.
T Consensus 110 ~L~~~~r~i~~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 159 (162)
T TIGR02983 110 RLPARQRAVVVLRYYEDLSEAQVAEALGISVGTVKSRLSRALARLRELLE 159 (162)
T ss_pred hCCHHHHHHhhhHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhc
Confidence 47889999999999999999999999999999999999999999887764
No 327
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=86.71 E-value=7.1 Score=46.73 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAI 99 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlai 99 (835)
.|..++.++..++..++.....+++|++|.||+++.=..+
T Consensus 18 Gqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LA 57 (535)
T PRK08451 18 GQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFA 57 (535)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHH
Confidence 4777788888888888776677999999999998775433
No 328
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=86.44 E-value=1.7 Score=44.96 Aligned_cols=47 Identities=11% Similarity=0.108 Sum_probs=31.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc------CCCcEEEecCChHhHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAA------GYSNIFVTAPSPENLKTLF 124 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~------g~~nI~VTAPs~enl~tlF 124 (835)
.+.+.|+|+.|.|||+.+-..++..... +..-|+|++=..-....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 4588999999999999887665543322 2456888875533333333
No 329
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=86.43 E-value=0.5 Score=47.61 Aligned_cols=49 Identities=24% Similarity=0.377 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEF 126 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef 126 (835)
...++|+|+||.|||+++=-.+...-..++.-+++......+...+..+
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 4689999999999999987665554333444556655555554444444
No 330
>TIGR02984 Sig-70_plancto1 RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are apparently found only in the Planctomycetaceae family including the genuses Gemmata and Pirellula (in which seven sequences are found).
Probab=86.38 E-value=2.1 Score=42.58 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=44.9
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~ 711 (835)
.|++.++.+++..-+++.|..+||..+|++.+.+-..+.+++++|-+.+
T Consensus 140 ~L~~~~r~vi~l~~~~g~s~~eIA~~lgis~~~v~~~l~Ra~~~Lr~~l 188 (189)
T TIGR02984 140 KLPEDYREVILLRHLEGLSFAEVAERMDRSEGAVSMLWVRGLARLRQIL 188 (189)
T ss_pred cCCHHHHHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999999999999998887654
No 331
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=86.38 E-value=1.8 Score=53.11 Aligned_cols=66 Identities=18% Similarity=0.143 Sum_probs=54.2
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-C--CCcEEEecCChHhHHHHHHHHHhhh
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA-G--YSNIFVTAPSPENLKTLFEFVCKGF 131 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~-g--~~nI~VTAPs~enl~tlFef~~kgl 131 (835)
.|.+|.+||.. ...+++|.|+.|.|||++|=--+|.++.. | ..+|++.+.+..+++.+-+-+.+-+
T Consensus 5 Ln~~Q~~av~~---------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 5 LNDKQREAVAA---------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cCHHHHHHHcC---------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 67889888741 13588999999999999998888999975 5 3689999999999999888776543
No 332
>PRK06288 RNA polymerase sigma factor WhiG; Reviewed
Probab=86.38 E-value=1.8 Score=46.52 Aligned_cols=55 Identities=24% Similarity=0.202 Sum_probs=50.0
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhch
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEISS 716 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~~~ 716 (835)
..|++.++.++....++++|..+||+++|++.+.+-..+.++++++-.++..+.+
T Consensus 211 ~~L~~~~r~vl~l~~~~~~s~~eIA~~lgis~~tV~~~~~ra~~~Lr~~l~~~~~ 265 (268)
T PRK06288 211 KTLPEREKKVLILYYYEDLTLKEIGKVLGVTESRISQLHTKAVLQLRAKLAEIKK 265 (268)
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3588999999999999999999999999999999999999999999999876643
No 333
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.37 E-value=2.2 Score=50.40 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcEEEecCCh
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAI-AAGYSNIFVTAPSP 117 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai-~~g~~nI~VTAPs~ 117 (835)
...+.|.|+.|.||||+++..++... ..|..+|.+.+-.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt 296 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS 296 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 35899999999999999999887764 45655664433333
No 334
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Probab=86.29 E-value=1.8 Score=41.46 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=43.0
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDY 710 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~ 710 (835)
.|++.++.++....+++.|+.+||+.+|++.+.+-..+.++.+++-+.
T Consensus 113 ~L~~~~r~il~l~~~~~~~~~eIA~~lgis~~tv~~~~~ra~~~Lr~~ 160 (161)
T TIGR02985 113 KLPEQCRKIFILSRFEGKSYKEIAEELGISVKTVEYHISKALKELRKE 160 (161)
T ss_pred HCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 478889999988889999999999999999999999999998888654
No 335
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.11 E-value=2.7 Score=46.46 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc----C--CCcEEEecCChHhHHHHHHHHHhhh
Q 003262 58 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA----G--YSNIFVTAPSPENLKTLFEFVCKGF 131 (835)
Q Consensus 58 T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~----g--~~nI~VTAPs~enl~tlFef~~kgl 131 (835)
=.+|.+.|..++.....+.....++|+|++|.|||+++=..+..+... | ..-|+|.+........++.-+...+
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l 99 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQL 99 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345666666666654444444578999999999999886555444321 1 2345666554434444554444433
No 336
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.08 E-value=6.6 Score=47.78 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLA 98 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGla 98 (835)
-|..++..|..++..++....++++|++|.|||++.-+.
T Consensus 20 GQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiAril 58 (624)
T PRK14959 20 GQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIF 58 (624)
T ss_pred CCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 466667777777877766667889999999999976443
No 337
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=85.83 E-value=0.22 Score=51.83 Aligned_cols=47 Identities=19% Similarity=0.112 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVC 128 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~ 128 (835)
+.++|||+.|.|||++|=.. +.++..+....+| |....--++|+.+.
T Consensus 30 ~~~~l~G~n~~GKstll~~i-~~~~~la~~G~~v--pa~~~~l~~~d~I~ 76 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQI-ALLAIMAQIGCFV--PAEYATLPIFNRLL 76 (204)
T ss_pred cEEEEECCCCCCHHHHHHHH-HHHHHHHHcCCCc--chhhcCccChhhee
Confidence 68999999999999988653 3333222122344 44443335555553
No 338
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=85.78 E-value=3 Score=43.18 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
.+.+.|+|+.|.|||+..=..++.....|..=+||++-
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45789999999999987644444455667777899987
No 339
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=85.63 E-value=5.5 Score=49.05 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
.+.++|+|++|.|||+++-. +|... +..-+.|..|
T Consensus 212 ~~giLL~GppGtGKT~lara-ia~~~--~~~~i~i~~~ 246 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKA-VANEA--GAYFISINGP 246 (733)
T ss_pred CceEEEECCCCCChHHHHHH-HHHHh--CCeEEEEecH
Confidence 35789999999999987654 34332 3333555554
No 340
>TIGR02947 SigH_actino RNA polymerase sigma-70 factor, TIGR02947 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and (with the exception of a paralog in Thermobifida fusca YX) one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria and each gene examined is followed by an anti-sigma factor in an apparent operon.
Probab=85.61 E-value=1.3 Score=44.77 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=47.7
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
.|++.++.+++...+++.|..+||+.+|++.+.|...+.++.++|-+++...
T Consensus 131 ~Lp~~~r~i~~L~~~~g~s~~EIA~~lgis~~tVk~~l~Rar~~Lr~~l~~~ 182 (193)
T TIGR02947 131 GLPEEFRQAVYLADVEGFAYKEIAEIMGTPIGTVMSRLHRGRKQLRKQLVDV 182 (193)
T ss_pred hCCHHHhhheeehhhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888999999999999999999999999999999999999999888754
No 341
>PRK12532 RNA polymerase sigma factor; Provisional
Probab=85.59 E-value=2.3 Score=43.02 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=45.6
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.|+.+++..-+++.|..+||+.+|++.+-+-..+.++.+++-+++.
T Consensus 136 ~L~~~~r~i~~L~~~~g~s~~EIA~~lgis~~tVk~~l~Rar~~Lr~~l~ 185 (195)
T PRK12532 136 NLPENTARVFTLKEILGFSSDEIQQMCGISTSNYHTIMHRARESLRQCLQ 185 (195)
T ss_pred hCCHHHHHHhhhHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999989999999999999999999999999999988888774
No 342
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=85.54 E-value=7.8 Score=44.26 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.1
Q ss_pred CcEEEEEcCCCCCHHHHH
Q 003262 78 RSTVALLAARGRGKSAAL 95 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaL 95 (835)
.+.++|+|+.|.|||++.
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 456999999999999753
No 343
>PHA02535 P terminase ATPase subunit; Provisional
Probab=85.43 E-value=32 Score=41.76 Aligned_cols=126 Identities=17% Similarity=0.247 Sum_probs=77.8
Q ss_pred cccccCCcHHHHHHHHHHH-HHHhc--------cCCCcEEEEEcCCCCCHHHHHHHH-HHHHHHcCCCcEEEecCChHhH
Q 003262 51 PLIKKCSTLDQGKAVITFL-DAILD--------KTLRSTVALLAARGRGKSAALGLA-IAGAIAAGYSNIFVTAPSPENL 120 (835)
Q Consensus 51 ~Lv~~~~T~DQakAl~~~~-~~i~e--------k~~r~~v~LTA~RGRGKSAaLGla-iA~ai~~g~~nI~VTAPs~enl 120 (835)
+-.+..-|..|...+..+. +.+.. +...+.-+++-.|=-|||-....- +-.++..|- |.+.-|||.+..
T Consensus 117 ~~~kn~~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~~G~-nqiflSas~~QA 195 (581)
T PHA02535 117 KPVKNDISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALLTGR-NQIFLSASKAQA 195 (581)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHhcCC-ceEEECCCHHHH
Confidence 3445567778888777665 44332 212356789999999999986643 334666775 666689999999
Q ss_pred HHHHHHHHhhhccccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeC--CccccccCCCcEEEEecccCCCH
Q 003262 121 KTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYME--PHEHEKLAQVELLVIDEAAAIPL 196 (835)
Q Consensus 121 ~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~--P~d~~~l~~adLLvIDEAAAIPl 196 (835)
..+.+++.+-.... .+.++. ..| | .| ..+.+|.|++ |..+... .--|+|||+|=||=
T Consensus 196 ~~f~~yi~~~a~~~-----~~v~l~--~~~--------I-~f-~nGa~I~fLstn~~taqg~--~G~vylDE~aw~~d 254 (581)
T PHA02535 196 HVFKQYIIAFAREA-----ADVELT--GDP--------I-IL-PNGAELHFLGTNANTAQSY--HGNVYFDEYFWIPK 254 (581)
T ss_pred HHHHHHHHHHHHhh-----cCceee--cce--------E-Ee-cCCCEEEEecCCCcccccc--CCCEEEEehhccCC
Confidence 98777754432220 111211 111 1 12 2467888886 4333222 23499999999998
No 344
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.40 E-value=14 Score=45.09 Aligned_cols=43 Identities=21% Similarity=0.222 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
.|..++..|..++..++.....+++|++|.||+++-- ++|.++
T Consensus 20 GQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~-~lAk~L 62 (620)
T PRK14954 20 AQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAAR-VFAKAV 62 (620)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHH-HHHHHh
Confidence 5788888888888888887789999999999998654 344444
No 345
>PRK12533 RNA polymerase sigma factor; Provisional
Probab=85.37 E-value=2.1 Score=44.97 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=47.7
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
.|++.|+.|++..-+++.|..+||+.||++.+-|...+.++.++|-+++.+-
T Consensus 134 ~Lp~~~R~v~~L~y~eg~s~~EIAe~LgiS~~tVk~~L~RAr~~Lr~~l~~~ 185 (216)
T PRK12533 134 KLPVEYREVLVLRELEDMSYREIAAIADVPVGTVMSRLARARRRLAALLGGA 185 (216)
T ss_pred cCCHHHHhHhhhHHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 5788999999999999999999999999999999999999999999888543
No 346
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=85.35 E-value=1.2 Score=55.42 Aligned_cols=54 Identities=15% Similarity=0.074 Sum_probs=38.8
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccc
Q 003262 82 ALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEY 136 (835)
Q Consensus 82 ~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy 136 (835)
+.-+..|-|||.+..++++.....|+ .+.|.+|+..=++.-++....-++.||.
T Consensus 98 Iaem~TGeGKTLva~lpa~l~aL~G~-~V~IvTpn~yLA~rd~e~~~~l~~~LGl 151 (830)
T PRK12904 98 IAEMKTGEGKTLVATLPAYLNALTGK-GVHVVTVNDYLAKRDAEWMGPLYEFLGL 151 (830)
T ss_pred hhhhhcCCCcHHHHHHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 55678999999999998864444575 5889999997666666655554444443
No 347
>PRK06930 positive control sigma-like factor; Validated
Probab=85.31 E-value=2.7 Score=42.84 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=47.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
.|++.+..+++...++++|..+||+.+|++.+.+-..+.++.+++-..+..
T Consensus 114 ~L~~rer~V~~L~~~eg~s~~EIA~~lgiS~~tVk~~l~Ra~~kLr~~l~~ 164 (170)
T PRK06930 114 VLTEREKEVYLMHRGYGLSYSEIADYLNIKKSTVQSMIERAEKKIARQINE 164 (170)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999887764
No 348
>PRK12511 RNA polymerase sigma factor; Provisional
Probab=85.30 E-value=2.5 Score=42.88 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=47.8
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
.|++.|+.++...-++++|..+||+.||++.+-+...+.++.++|-+++...
T Consensus 111 ~Lp~~~R~v~~L~~~eg~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~~~~~ 162 (182)
T PRK12511 111 DLPEEQRAALHLVAIEGLSYQEAAAVLGIPIGTLMSRIGRARAALRAFEEGT 162 (182)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999998888744
No 349
>PRK12515 RNA polymerase sigma factor; Provisional
Probab=85.28 E-value=2.6 Score=42.40 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=46.9
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
.|++.|+.+|...-+++.|.++||+.+|++.+.+-..+.++.++|-.++..
T Consensus 131 ~L~~~~r~vl~l~~~~~~s~~eIA~~lgis~~tV~~~l~Rar~~Lr~~l~~ 181 (189)
T PRK12515 131 KLSPAHREIIDLVYYHEKSVEEVGEIVGIPESTVKTRMFYARKKLAELLKA 181 (189)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999888754
No 350
>TIGR02950 SigM_subfam RNA polymerase sigma factor, SigM family. This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot: SIGM_BACSU) and is activated by various stressors.
Probab=85.26 E-value=0.98 Score=43.49 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=43.7
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~ 711 (835)
.|++.++.+++..-+++.|+.+||+.+|++.+.+-..+.++.+++-+.|
T Consensus 105 ~L~~~~r~i~~l~~~~g~s~~eIA~~lgis~~tv~~~l~Ra~~~Lr~~l 153 (154)
T TIGR02950 105 RLPENYRTVLILREFKEFSYKEIAELLNLSLAKVKSNLFRARKELKKLL 153 (154)
T ss_pred hCCHhheeeeeehhhccCcHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 3678888888888889999999999999999999999999998887765
No 351
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=85.25 E-value=15 Score=36.74 Aligned_cols=123 Identities=18% Similarity=0.237 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccc
Q 003262 61 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHI 140 (835)
Q Consensus 61 QakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~ 140 (835)
|.+++..+.+.+..++....++++|++|.||+++.-..+..++-...... .+- .-.+.+ ......|.
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~-~c~-~c~~c~-----------~~~~~~~~ 68 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED-PCG-ECRSCR-----------RIEEGNHP 68 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT---S-SSHHHH-----------HHHTT-CT
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC-CCC-CCHHHH-----------HHHhccCc
Confidence 67788888888888888888999999999998865433332222211100 000 001111 11224567
Q ss_pred cceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhhc
Q 003262 141 DYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG 204 (835)
Q Consensus 141 dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~ 204 (835)
|+.++...+. +-.+.|.-.|.-... -+..|.. +..-++|||||=.+-...-..|+.
T Consensus 69 d~~~~~~~~~---~~~i~i~~ir~i~~~-~~~~~~~----~~~KviiI~~ad~l~~~a~NaLLK 124 (162)
T PF13177_consen 69 DFIIIKPDKK---KKSIKIDQIREIIEF-LSLSPSE----GKYKVIIIDEADKLTEEAQNALLK 124 (162)
T ss_dssp TEEEEETTTS---SSSBSHHHHHHHHHH-CTSS-TT----SSSEEEEEETGGGS-HHHHHHHHH
T ss_pred ceEEEecccc---cchhhHHHHHHHHHH-HHHHHhc----CCceEEEeehHhhhhHHHHHHHHH
Confidence 7766654332 001111111110000 1122221 356799999999999887777763
No 352
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=85.14 E-value=8.8 Score=42.91 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
...+.++|+.|.||||++.-.++.+...|++=.++++..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 357899999999999999987766666676444566554
No 353
>CHL00095 clpC Clp protease ATP binding subunit
Probab=85.09 E-value=3.9 Score=51.10 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=39.9
Q ss_pred HHHHHHHHhcccCCCCccccccCCcHHHHHHHHHHHHHHhccC-----CC---cEEEEEcCCCCCHHHHHHHHHHHH
Q 003262 34 RDLKDLKEQLCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKT-----LR---STVALLAARGRGKSAALGLAIAGA 102 (835)
Q Consensus 34 ~~l~~lk~~l~~~~p~g~Lv~~~~T~DQakAl~~~~~~i~ek~-----~r---~~v~LTA~RGRGKSAaLGlaiA~a 102 (835)
..|..|.+.|.+ .=..|-.|+..+.+++.... .+ ..+.++|+.|.|||.+... +|..
T Consensus 498 ~~l~~l~~~L~~-----------~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~-LA~~ 562 (821)
T CHL00095 498 EKLLHMEETLHK-----------RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKA-LASY 562 (821)
T ss_pred HHHHHHHHHhcC-----------cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHH-HHHH
Confidence 347788888876 33579999999988886321 12 2478999999999975543 3443
No 354
>TIGR02980 SigBFG RNA polymerase sigma-70 factor, sigma-B/F/G subfamily. This group of similar sigma-70 factors includes clades found in Bacilli (including the sporulation factors SigF:TIGR02885 and SigG:TIGR02850 as well as SigB:TIGR02941), and the high GC gram positive bacteria (Actinobacteria) where a variable number of them are found depending on the lineage.
Probab=85.07 E-value=2.4 Score=44.14 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=45.2
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~ 711 (835)
.|++.|+.++....+++.|..+||+.+|++.+.+-..+.++++++-+++
T Consensus 178 ~L~~~~r~vl~l~y~~~~s~~eIA~~lgis~~~v~~~~~ra~~~Lr~~l 226 (227)
T TIGR02980 178 ALPERERRILLLRFFEDKTQSEIAERLGISQMHVSRLLRRALKKLREQL 226 (227)
T ss_pred cCCHHHHHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999999999999999987654
No 355
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=85.06 E-value=3.4 Score=32.55 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=36.3
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKL 707 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl 707 (835)
.|++.|..++.. ..++++..+||++++++.+.+...++++.+++
T Consensus 3 ~l~~~e~~i~~~-~~~g~s~~eia~~l~is~~tv~~~~~~~~~kl 46 (58)
T smart00421 3 SLTPREREVLRL-LAEGLTNKEIAERLGISEKTVKTHLSNIMRKL 46 (58)
T ss_pred CCCHHHHHHHHH-HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 467877776644 68999999999999999998888888777665
No 356
>TIGR02952 Sig70_famx2 RNA polymerase sigma-70 factor, TIGR02952 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in a limited number of Gram-positive bacterial lineages.
Probab=84.88 E-value=2.3 Score=41.50 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=44.1
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDY 710 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~ 710 (835)
..|++.|+.|+...-+++.|..+||+.||++.+.+-..+.++.+++-+.
T Consensus 121 ~~L~~~~r~vl~l~~~~g~s~~eIA~~l~is~~tv~~~l~ra~~~Lr~~ 169 (170)
T TIGR02952 121 KILTPKQQHVIALRFGQNLPIAEVARILGKTEGAVKILQFRAIKKLARQ 169 (170)
T ss_pred HhCCHHHHHHHHHHHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 3588999999999999999999999999999999999999988887653
No 357
>PRK06986 fliA flagellar biosynthesis sigma factor; Validated
Probab=84.86 E-value=2.4 Score=44.61 Aligned_cols=50 Identities=14% Similarity=0.124 Sum_probs=46.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.|+.++....++++|..+||+.+|++.+-|-..+.++++++-+.+.
T Consensus 184 ~L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 233 (236)
T PRK06986 184 SLPEREQLVLSLYYQEELNLKEIGAVLGVSESRVSQIHSQAIKRLRARLG 233 (236)
T ss_pred hCCHHHHHHHHhHhccCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999988764
No 358
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=84.81 E-value=4.5 Score=49.12 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 003262 665 SYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVM 704 (835)
Q Consensus 665 s~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i 704 (835)
.+.|.++.|+.-+=+.|..+|++.||-.-+-|+..++|+=
T Consensus 555 ~aRqiAMYL~r~lt~~Sl~~IG~~FgRdHSTV~~A~~kI~ 594 (617)
T PRK14086 555 TARQIAMYLCRELTDLSLPKIGQQFGRDHTTVMHADRKIR 594 (617)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHhCCChhHHHHHHHHHH
Confidence 3678899999999999999999999944466665554443
No 359
>PRK12544 RNA polymerase sigma factor; Provisional
Probab=84.70 E-value=2.8 Score=43.42 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=46.9
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.|+.+++..-+++.|..+||+.+|++.+-+...+.++.++|-+++.
T Consensus 148 ~L~~~~r~v~~L~~~~g~s~~EIAe~lgis~~tV~~~l~RAr~~Lr~~l~ 197 (206)
T PRK12544 148 GLPAKYARVFMMREFIELETNEICHAVDLSVSNLNVLLYRARLRLRECLE 197 (206)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999988875
No 360
>PRK09647 RNA polymerase sigma factor SigE; Reviewed
Probab=84.68 E-value=2.8 Score=43.38 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=46.7
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
.|++.++.+++..-+++++..+||+.+|++.+-+...+.++.++|-+++..
T Consensus 138 ~L~~~~r~v~~L~~~~g~s~~EIA~~Lgis~~tV~~~l~RArk~Lr~~l~~ 188 (203)
T PRK09647 138 SLPPEFRAAVVLCDIEGLSYEEIAATLGVKLGTVRSRIHRGRQQLRAALAA 188 (203)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999988899999999999999999999999999999999887754
No 361
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=84.58 E-value=3 Score=42.86 Aligned_cols=37 Identities=11% Similarity=0.174 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEec
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTA 114 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTA 114 (835)
.+.+.|+|+.|.|||++.=..++.+...|..=+||++
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 4578899999999999776655555566776678876
No 362
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=84.54 E-value=7.1 Score=47.76 Aligned_cols=76 Identities=21% Similarity=0.214 Sum_probs=55.1
Q ss_pred ccccccCCcHHHHHHHHHHHHHHhccC---CCcEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCcEEEecCChHhHHHHHH
Q 003262 50 GPLIKKCSTLDQGKAVITFLDAILDKT---LRSTVALLAARGRGKSAALGLAIAGAIA-AGYSNIFVTAPSPENLKTLFE 125 (835)
Q Consensus 50 g~Lv~~~~T~DQakAl~~~~~~i~ek~---~r~~v~LTA~RGRGKSAaLGlaiA~ai~-~g~~nI~VTAPs~enl~tlFe 125 (835)
+...+...-.-|-.||.++++++..+. .++-.+|..+.|.|||-+.-.++-.++. .+..+|+|.+|..+=+...++
T Consensus 232 ~~~~k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 232 GLVTKPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred CceeeeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHH
Confidence 445566677889999999999987632 1234678889999999766544444443 355689999999987777764
No 363
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=84.38 E-value=4.9 Score=44.07 Aligned_cols=68 Identities=10% Similarity=-0.029 Sum_probs=48.0
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHH-HHHHHcCCC----cEEEecCChHhHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAI-AGAIAAGYS----NIFVTAPSPENLKTLFEFV 127 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlai-A~ai~~g~~----nI~VTAPs~enl~tlFef~ 127 (835)
....|.+-..++.+++.++ ..+++-|+.|.|||.++=+++ +.+...+.. +|++++++..-...+++-+
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~---~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRG---KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCHHHHHHHHHHHHHHHcC---CcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHH
Confidence 3678888888888887664 478999999999996665544 444555543 7888888776555554433
No 364
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=84.38 E-value=4.9 Score=44.07 Aligned_cols=68 Identities=10% Similarity=-0.029 Sum_probs=48.0
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHH-HHHHHcCCC----cEEEecCChHhHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAI-AGAIAAGYS----NIFVTAPSPENLKTLFEFV 127 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlai-A~ai~~g~~----nI~VTAPs~enl~tlFef~ 127 (835)
....|.+-..++.+++.++ ..+++-|+.|.|||.++=+++ +.+...+.. +|++++++..-...+++-+
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~---~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRG---KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCHHHHHHHHHHHHHHHcC---CcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHH
Confidence 3678888888888887664 478999999999996665544 444555543 7888888776555554433
No 365
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=84.26 E-value=4.8 Score=46.75 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcE-EEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAI-AAGYSNI-FVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai-~~g~~nI-~VTAPs 116 (835)
...+.|.|+.|.||||++...++..+ ..|..++ +||+.+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~ 231 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDS 231 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 35799999999999999998777554 3354444 566665
No 366
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=84.15 E-value=2.2 Score=43.12 Aligned_cols=49 Identities=16% Similarity=0.060 Sum_probs=45.2
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~ 711 (835)
.|++.|+.+++..-+++.|..+||+.+|++.+.+-..+.++.++|-+.+
T Consensus 130 ~Lp~~~r~v~~L~~~~g~s~~EIA~~lgis~~tVk~~l~Rar~~Lr~~~ 178 (185)
T PRK09649 130 DLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADA 178 (185)
T ss_pred hCCHHHhHHhhhHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC
Confidence 5789999999999999999999999999999999999999998887744
No 367
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=83.97 E-value=4.9 Score=51.13 Aligned_cols=155 Identities=19% Similarity=0.282 Sum_probs=83.0
Q ss_pred CCCccccccC--CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC-CcEEEecCChHhHHHH
Q 003262 47 FPVGPLIKKC--STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGY-SNIFVTAPSPENLKTL 123 (835)
Q Consensus 47 ~p~g~Lv~~~--~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~-~nI~VTAPs~enl~tl 123 (835)
.|+..|...- .-+-|..++..++. . . ..-+.|--+=|=|||---|+.+...+..|. .+|+|.+|.. + +
T Consensus 141 ~p~~~l~~~~~~l~pHQl~~~~~vl~---~-~-~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~s--L--~ 211 (956)
T PRK04914 141 SPLRGLRGARASLIPHQLYIAHEVGR---R-H-APRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPET--L--Q 211 (956)
T ss_pred CCchhhccCCCCCCHHHHHHHHHHhh---c-c-CCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHH--H--H
Confidence 4676665433 56688887654433 2 2 223567778999999999999888887774 6899999963 2 2
Q ss_pred HHHHHhhhccccccccccceeeecCCCCCCcceeEeeeeeccce---eEEeeCCcc--ccc--cCCCcEEEEecccCC--
Q 003262 124 FEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQ---TIQYMEPHE--HEK--LAQVELLVIDEAAAI-- 194 (835)
Q Consensus 124 Fef~~kgl~~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq---~Iqyi~P~d--~~~--l~~adLLvIDEAAAI-- 194 (835)
.++...-.+.++ +++.++.+....-.+ --..|.|..+.. ++.|+..+. ... -..+|+||||||=-|
T Consensus 212 ~QW~~El~~kF~----l~~~i~~~~~~~~~~-~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~ 286 (956)
T PRK04914 212 HQWLVEMLRRFN----LRFSLFDEERYAEAQ-HDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVW 286 (956)
T ss_pred HHHHHHHHHHhC----CCeEEEcCcchhhhc-ccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhcc
Confidence 333222111121 223333221100000 000011111111 122333221 111 246899999999777
Q ss_pred ----C---HHHHHHhhc--CCeEEEEeecc
Q 003262 195 ----P---LPVVRSLLG--PYLVFLSSTVN 215 (835)
Q Consensus 195 ----P---lpllk~Ll~--~y~vflsSTi~ 215 (835)
| .-.++.|.. +++++||.|=+
T Consensus 287 ~~~~~s~~y~~v~~La~~~~~~LLLTATP~ 316 (956)
T PRK04914 287 SEEAPSREYQVVEQLAEVIPGVLLLTATPE 316 (956)
T ss_pred CCCCcCHHHHHHHHHhhccCCEEEEEcCcc
Confidence 3 345666653 57888888876
No 368
>PRK12538 RNA polymerase sigma factor; Provisional
Probab=83.89 E-value=2.6 Score=44.74 Aligned_cols=52 Identities=17% Similarity=0.093 Sum_probs=47.4
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
.|++.|+.+++..-++++|..+||+++|++.+-|-..+.++.++|-+++...
T Consensus 171 ~Lp~~~R~v~~L~~~eg~s~~EIA~~Lgis~~tVk~~l~RAr~kLr~~l~~~ 222 (233)
T PRK12538 171 RLPEQQRIAVILSYHENMSNGEIAEVMDTTVAAVESLLKRGRQQLRDLLRRH 222 (233)
T ss_pred hCCHHHHHHhhhHHhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999999999999999999999999999999998887643
No 369
>PRK12535 RNA polymerase sigma factor; Provisional
Probab=83.89 E-value=2.7 Score=43.07 Aligned_cols=53 Identities=11% Similarity=0.039 Sum_probs=48.6
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEIS 715 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~~ 715 (835)
.|++.++.+++...+++.|..+||+.+|++.+-|...+.++.++|-+++...+
T Consensus 133 ~Lp~~~r~v~~l~~~~g~s~~EIAe~lgis~~tV~~~l~Rar~~Lr~~l~~~~ 185 (196)
T PRK12535 133 ALPPERREALILTQVLGYTYEEAAKIADVRVGTIRSRVARARADLIAATATGQ 185 (196)
T ss_pred cCCHHHHHHhhhHHHhCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 47899999999999999999999999999999999999999999988886543
No 370
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=83.85 E-value=4.6 Score=50.17 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=20.8
Q ss_pred HHHHHHHHhccCCCcEEEEEcCCCCCHHHHHH
Q 003262 65 VITFLDAILDKTLRSTVALLAARGRGKSAALG 96 (835)
Q Consensus 65 l~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLG 96 (835)
+..+++.+..++ +..++|+|++|.|||++.-
T Consensus 195 i~~~i~iL~r~~-~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 195 LERAIQVLCRRR-KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred HHHHHHHHhccC-CCCeEEECCCCCCHHHHHH
Confidence 344444444433 4567899999999999753
No 371
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=83.85 E-value=1.3 Score=47.74 Aligned_cols=45 Identities=13% Similarity=0.457 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHH
Q 003262 80 TVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFV 127 (835)
Q Consensus 80 ~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~ 127 (835)
.+++.|.||.|||+++=-.+. -+...|.+|++.+|... .....|+
T Consensus 15 r~viIG~sGSGKT~li~~lL~-~~~~~f~~I~l~t~~~n--~~~~~~i 59 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY-YLRHKFDHIFLITPEYN--NEYYKYI 59 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH-hhcccCCEEEEEecCCc--hhhhhhc
Confidence 578999999999998854443 34557899999999544 4555554
No 372
>PRK10865 protein disaggregation chaperone; Provisional
Probab=83.84 E-value=5.4 Score=50.20 Aligned_cols=58 Identities=22% Similarity=0.302 Sum_probs=38.7
Q ss_pred HHHHHHHHhcccCCCCccccccCCcHHHHHHHHHHHHHHhccC-----CC---cEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 34 RDLKDLKEQLCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKT-----LR---STVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 34 ~~l~~lk~~l~~~~p~g~Lv~~~~T~DQakAl~~~~~~i~ek~-----~r---~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
..|..|++.|... =..|..|+..+.++|.... .+ .++.++|+.|.|||++. -++|..+
T Consensus 557 ~~l~~l~~~l~~~-----------viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA-~aLa~~l 622 (857)
T PRK10865 557 EKLLRMEQELHHR-----------VIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC-KALANFM 622 (857)
T ss_pred HHHHHHHHHhCCe-----------EeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH-HHHHHHh
Confidence 4577777777763 2367888777777775321 11 36899999999999965 3445443
No 373
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.78 E-value=10 Score=46.11 Aligned_cols=43 Identities=19% Similarity=0.386 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
.|..++..+..++..++....++++|++|.||+++.=. +|..+
T Consensus 20 Gq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~-lAk~L 62 (620)
T PRK14948 20 GQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARI-LAKSL 62 (620)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHH-HHHHh
Confidence 57777778888888877767889999999999987643 44444
No 374
>PRK09651 RNA polymerase sigma factor FecI; Provisional
Probab=83.75 E-value=2.7 Score=41.86 Aligned_cols=49 Identities=12% Similarity=0.069 Sum_probs=45.3
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~ 711 (835)
.|++.|+.|++..-++++|..+||+.+|++.+.+-..+.++++++..+.
T Consensus 119 ~L~~~~r~i~~l~~~~g~s~~EIA~~lgis~~tV~~~l~Ra~~~~~~~~ 167 (172)
T PRK09651 119 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSVSSVKKYVAKATEHCLLFR 167 (172)
T ss_pred hCCHHHhHHhhhhhccCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999887664
No 375
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=83.51 E-value=3.1 Score=46.67 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=32.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCh
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP 117 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~ 117 (835)
.+.+.|.|+.|.|||++.-.+++.+...|..-+||+++..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~ 94 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHA 94 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccch
Confidence 3478899999999999987777777777766789988643
No 376
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.45 E-value=11 Score=45.48 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLA 98 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGla 98 (835)
.|.+++..+..++..++....++++|++|.|||++.=+.
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHH
Confidence 477777778888887776667899999999999976443
No 377
>PRK12541 RNA polymerase sigma factor; Provisional
Probab=83.45 E-value=2.8 Score=40.98 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=42.6
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTD 709 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~ 709 (835)
.|++.|+.++....+++.|.++||+.+|++.+.+...+.++.++|-+
T Consensus 112 ~L~~~~r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~l~Rar~~L~~ 158 (161)
T PRK12541 112 SLPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKETKS 158 (161)
T ss_pred HCCHHHHHHhhhHHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999988888877753
No 378
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=83.40 E-value=15 Score=41.81 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
.|.++...|.+++..++....+.++|++|-||+++ ..++|..+
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~l-A~~~A~~L 65 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATL-AYRMARFL 65 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHH-HHHHHHHH
Confidence 58888888899999998888899999999999986 34555555
No 379
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=83.27 E-value=5.3 Score=50.17 Aligned_cols=52 Identities=25% Similarity=0.294 Sum_probs=36.4
Q ss_pred HHHHHHHHhcccCCCCccccccCCcHHHHHHHHHHHHHHhccC--------CCcEEEEEcCCCCCHHHHHH
Q 003262 34 RDLKDLKEQLCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKT--------LRSTVALLAARGRGKSAALG 96 (835)
Q Consensus 34 ~~l~~lk~~l~~~~p~g~Lv~~~~T~DQakAl~~~~~~i~ek~--------~r~~v~LTA~RGRGKSAaLG 96 (835)
..|..|++.|... -..|-.|+..+.++|.... ...++.++|+.|.|||.+--
T Consensus 554 ~~l~~l~~~l~~~-----------v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~ 613 (852)
T TIGR03346 554 EKLLHMEEVLHER-----------VVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAK 613 (852)
T ss_pred HHHHHHHHHhhcc-----------cCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHH
Confidence 3567777777652 3468888888888876421 12358899999999997543
No 380
>PRK05803 sporulation sigma factor SigK; Reviewed
Probab=83.26 E-value=3.1 Score=43.67 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=45.1
Q ss_pred CccHHHHHHHHHHH----hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 663 TLSYVQAAVLLYIG----MLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 663 ~Ls~~q~~iLla~g----LQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
.|++.++.|+...- .+++|..+||+++|++.+.+....+++++++-.++..
T Consensus 175 ~Lp~~~R~i~~l~y~~~~~e~~S~~EIA~~lgis~~tV~~~~~rA~~kLr~~l~~ 229 (233)
T PRK05803 175 ILDEREKEVIEMRYGLGNGKEKTQREIAKALGISRSYVSRIEKRALKKLFKELYR 229 (233)
T ss_pred hCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888766 6999999999999999999999999999999888754
No 381
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=83.17 E-value=5.4 Score=49.20 Aligned_cols=37 Identities=14% Similarity=0.168 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGL 97 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGl 97 (835)
.|.+-+..+++.+..++. .-++|.|++|.|||+..-.
T Consensus 186 gr~~ei~~~~~~L~~~~~-~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 186 GREDELERTIQVLCRRKK-NNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CcHHHHHHHHHHHhcCCC-CceEEECCCCCCHHHHHHH
Confidence 455666667776666554 4568999999999998743
No 382
>PRK07670 RNA polymerase sigma factor SigD; Validated
Probab=83.16 E-value=3.2 Score=44.20 Aligned_cols=51 Identities=22% Similarity=0.186 Sum_probs=46.3
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
..|++.++.++....++++|..+||+.+|++.+.|-..+.++++++-.++.
T Consensus 200 ~~L~~~~r~vl~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 250 (251)
T PRK07670 200 KQLSEKEQLVISLFYKEELTLTEIGQVLNLSTSRISQIHSKALFKLKKLLE 250 (251)
T ss_pred hcCCHHHHHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhh
Confidence 357889999999999999999999999999999999999999999877664
No 383
>PRK09640 RNA polymerase sigma factor SigX; Reviewed
Probab=83.12 E-value=1.5 Score=44.19 Aligned_cols=53 Identities=9% Similarity=0.206 Sum_probs=47.3
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEIS 715 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~~ 715 (835)
.|++.|+.+++-.-++++|.++||+.||++.+.|-..+.++.++|-+.+..+.
T Consensus 134 ~L~~~~r~v~~l~~~~g~s~~EIA~~lgis~~tV~~~l~Ra~~~Lr~~l~~~~ 186 (188)
T PRK09640 134 HVNPIDREILVLRFVAELEFQEIADIMHMGLSATKMRYKRALDKLREKFAGLA 186 (188)
T ss_pred hcChhheeeeeeHHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888998889999999999999999999999999999999988876654
No 384
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=83.01 E-value=4.4 Score=32.14 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=33.7
Q ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 003262 664 LSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKL 707 (835)
Q Consensus 664 Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl 707 (835)
|++.|..++.. ..++.+..+||+.++++.+.+...++++.+++
T Consensus 1 l~~~e~~i~~~-~~~~~s~~eia~~l~~s~~tv~~~~~~~~~~l 43 (57)
T cd06170 1 LTPREREVLRL-LAEGKTNKEIADILGISEKTVKTHLRNIMRKL 43 (57)
T ss_pred CCHHHHHHHHH-HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 35666665544 57999999999999999998888877776554
No 385
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=82.90 E-value=1.7 Score=38.70 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=28.3
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHhcc
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQ 447 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~ 447 (835)
-+-|...-|.|++||+|+|+.+++.+.+|.+.+
T Consensus 22 ~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~ 54 (78)
T PF14542_consen 22 VIVITHTEVPPELRGQGIAKKLVEAALDYAREN 54 (78)
T ss_dssp EEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEECccccCCcHHHHHHHHHHHHHHHC
Confidence 367889999999999999999999999998644
No 386
>PRK06851 hypothetical protein; Provisional
Probab=82.81 E-value=3.2 Score=47.33 Aligned_cols=68 Identities=21% Similarity=0.339 Sum_probs=50.5
Q ss_pred ccccccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCC-cEEEecCChHhHH
Q 003262 50 GPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYS-NIFVTAPSPENLK 121 (835)
Q Consensus 50 g~Lv~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~-nI~VTAPs~enl~ 121 (835)
..+.-.+-|. +-...+++.+.+. .++.++|||+.|.|||+++.-.+..+...|+. -++=|+=.|+.+.
T Consensus 190 rh~F~ga~Tp---~G~~s~~~~l~~~-~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dPdslD 258 (367)
T PRK06851 190 RHLFLGAITP---KGAVDFVPSLTEG-VKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDPDSLD 258 (367)
T ss_pred eeeeccccCC---CcHHhhHHhHhcc-cceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCcc
Confidence 3455566665 4566788888753 46789999999999999999999999999985 3455666666543
No 387
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=82.63 E-value=2.6 Score=49.59 Aligned_cols=131 Identities=19% Similarity=0.311 Sum_probs=84.0
Q ss_pred HHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeee
Q 003262 67 TFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVR 146 (835)
Q Consensus 67 ~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~ 146 (835)
.|++.+.. +..+++.|+.|.||||-+-..++......-.-|..|-|..-++-.+-.-+...+|- ...+.+.|.|.+
T Consensus 54 ~F~~~l~~---nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv-~lG~EVGysIrf 129 (699)
T KOG0925|consen 54 EFLKLLLN---NQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDV-TLGEEVGYSIRF 129 (699)
T ss_pred HHHHHHhc---CceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhcc-ccchhccccccc
Confidence 46665544 45899999999999999988887655332367999999999988888777766654 223445565543
Q ss_pred cCCCCCCcceeEeeeeeccceeEEeeCCccc-------cccCCCcEEEEecccC--CCHHHHHHhhc------CC--eEE
Q 003262 147 SSNPDLRKPIVRINIYRQHRQTIQYMEPHEH-------EKLAQVELLVIDEAAA--IPLPVVRSLLG------PY--LVF 209 (835)
Q Consensus 147 st~p~~~~aivrvni~~~hrq~Iqyi~P~d~-------~~l~~adLLvIDEAAA--IPlpllk~Ll~------~y--~vf 209 (835)
. ++. +.+--+.|+-..-+ ..++...++|.|||-- +-.++|-.|+. |- +|+
T Consensus 130 E------dC~-------~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk~vv 196 (699)
T KOG0925|consen 130 E------DCT-------SPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLKLVV 196 (699)
T ss_pred c------ccC-------ChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCceEEE
Confidence 2 110 11112345443322 1357889999999864 44445555442 33 688
Q ss_pred EEeec
Q 003262 210 LSSTV 214 (835)
Q Consensus 210 lsSTi 214 (835)
||+|.
T Consensus 197 mSatl 201 (699)
T KOG0925|consen 197 MSATL 201 (699)
T ss_pred eeccc
Confidence 99994
No 388
>PRK12518 RNA polymerase sigma factor; Provisional
Probab=82.56 E-value=1.8 Score=42.81 Aligned_cols=51 Identities=20% Similarity=0.183 Sum_probs=46.9
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
.|++.++.+|....+++.|..+||+.+|++.+.+-..+.++.+++-.++..
T Consensus 120 ~L~~~~r~vl~l~~~~g~s~~eIA~~lg~s~~tv~~~l~Rar~~L~~~l~~ 170 (175)
T PRK12518 120 TLSLEHRAVLVLHDLEDLPQKEIAEILNIPVGTVKSRLFYARRQLRKFLQQ 170 (175)
T ss_pred hCCHHHeeeeeehHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 478889999999999999999999999999999999999999999888754
No 389
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=82.46 E-value=4.3 Score=44.42 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=27.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
..+++.|..|.|||+++-+.++.+...|.+--+|++-
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D 112 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 112 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 5789999999999998887666655555544456653
No 390
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=82.33 E-value=4.7 Score=49.13 Aligned_cols=64 Identities=20% Similarity=0.223 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCcEEEecCChHhHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA-AGYSNIFVTAPSPENLKTLFEF 126 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~-~g~~nI~VTAPs~enl~tlFef 126 (835)
+|.+-...+.+++.++ ..+++-|+.|.|||.+--+.+...+. ....+|+|++|+.+=...+++-
T Consensus 1 ~Q~~~~~~i~~al~~~---~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~ 65 (636)
T TIGR03117 1 EQALFYLNCLTSLRQK---RIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSE 65 (636)
T ss_pred CHHHHHHHHHHHHhcC---CeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHH
Confidence 4888888888888664 57999999999999777666543333 2246899999999988888873
No 391
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=82.31 E-value=2.9 Score=46.97 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=33.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHh
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPEN 119 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~en 119 (835)
.+.+.|.|+.|.|||++.-.+++.+...|..-+||++...-.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~ 96 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALD 96 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHH
Confidence 347789999999999888777777777787779999865433
No 392
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=82.07 E-value=4.3 Score=46.32 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
.+.+.|+|+.|-|||+++=..++.....|..-+||+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 45889999999999998765555444455444577764
No 393
>TIGR02479 FliA_WhiG RNA polymerase sigma factor, FliA/WhiG family. Most members of this family are the flagellar operon sigma factor FliA, controlling transcription of bacterial flagellar genes by RNA polymerase. An exception is the sigma factor WhiG in the genus Streptomyces, involved in the production of sporulating aerial mycelium.
Probab=82.06 E-value=3.6 Score=42.86 Aligned_cols=50 Identities=22% Similarity=0.195 Sum_probs=45.6
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~ 711 (835)
..|++.|+.++....++++|..+||+.+|++.+.+-..++++++++-.++
T Consensus 174 ~~L~~~~r~il~l~y~~~~s~~eIA~~lgis~~tV~~~~~ra~~~Lr~~l 223 (224)
T TIGR02479 174 ESLSEREQLVLSLYYYEELNLKEIGEVLGLTESRVSQIHSQALKKLRAKL 223 (224)
T ss_pred HhCCHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHc
Confidence 35889999999999999999999999999999999999999999887664
No 394
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.96 E-value=7.4 Score=48.43 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcE-EEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAI-AAGYSNI-FVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai-~~g~~nI-~VTAPs 116 (835)
...+.+.|+.|.||||+++..++... ..|..+| +||+-+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt 225 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDS 225 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcc
Confidence 35889999999999999999887764 4565566 555543
No 395
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=81.89 E-value=6.8 Score=48.39 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=38.0
Q ss_pred HHHHHHHHhcccCCCCccccccCCcHHHHHHHHHHHHHHhcc--------CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 34 RDLKDLKEQLCDDFPVGPLIKKCSTLDQGKAVITFLDAILDK--------TLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 34 ~~l~~lk~~l~~~~p~g~Lv~~~~T~DQakAl~~~~~~i~ek--------~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
..|..+++.|... -..|.+|+..+.+++... +....+.++|+.|.|||.+.- ++|..+
T Consensus 443 ~~l~~l~~~l~~~-----------v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~-~la~~l 508 (731)
T TIGR02639 443 EKLKNLEKNLKAK-----------IFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAK-QLAEAL 508 (731)
T ss_pred HHHHHHHHHHhcc-----------eeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHH-HHHHHh
Confidence 3566667666652 346888888888877742 112257899999999996543 344443
No 396
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=81.89 E-value=5.6 Score=49.50 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=39.9
Q ss_pred HHHHHHHHhcccCCCCccccccCCcHHHHHHHHHHHHHHhcc--------CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 34 RDLKDLKEQLCDDFPVGPLIKKCSTLDQGKAVITFLDAILDK--------TLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 34 ~~l~~lk~~l~~~~p~g~Lv~~~~T~DQakAl~~~~~~i~ek--------~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
..|..|.+.|+. .=..|.+|+..+.++|... +....+.++|+.|.|||.+.- ++|..+
T Consensus 447 ~~l~~l~~~L~~-----------~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk-~LA~~l 512 (758)
T PRK11034 447 DTLKNLGDRLKM-----------LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTV-QLSKAL 512 (758)
T ss_pred HHHHHHHHHhcc-----------eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHH-HHHHHh
Confidence 356667776665 3357888888888887731 122468999999999998664 445444
No 397
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=81.87 E-value=0.62 Score=43.04 Aligned_cols=48 Identities=21% Similarity=0.316 Sum_probs=39.4
Q ss_pred CCCCCchhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHhccc
Q 003262 391 QPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQL 448 (835)
Q Consensus 391 Rp~GdLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~ 448 (835)
-|.|.+|-|+|..|++.---+ .|-|+|||+||.+.++-.+.++...+.
T Consensus 5 gpeG~PVSW~lmdqtge~rmg----------yTlPeyR~~G~~~~v~~~~~~~L~~~g 52 (89)
T PF08444_consen 5 GPEGNPVSWSLMDQTGEMRMG----------YTLPEYRGQGLMSQVMYHLAQYLHKLG 52 (89)
T ss_pred CCCCCEeEEEEeccccccccc----------ccCHhHhcCCHHHHHHHHHHHHHHHCC
Confidence 478999999999887543221 689999999999999999999886554
No 398
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=81.64 E-value=19 Score=40.12 Aligned_cols=38 Identities=24% Similarity=0.208 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGL 97 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGl 97 (835)
.|..++..+...+..++......++|++|-||+++.=.
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~ 47 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALW 47 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHH
Confidence 37778888888888888888889999999999986643
No 399
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=81.64 E-value=1.8 Score=53.03 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=32.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHH
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFE 125 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFe 125 (835)
+++.|||.-|.|||+.+--..+- .|.+||+|+.-+.+.+..
T Consensus 72 s~~~itG~AGsGKst~i~~l~~~------l~cvitg~T~vAAqN~~~ 112 (828)
T PHA03311 72 SVYLITGTAGAGKSTSIQTLNEN------LDCVITGATRVAAQNLSA 112 (828)
T ss_pred EEEEEecCCCCChHHHHHHHHHh------cCEEEEcchHHHHHhhhc
Confidence 47899999999999998644332 389999999888766654
No 400
>CHL00176 ftsH cell division protein; Validated
Probab=81.62 E-value=11 Score=46.22 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=16.1
Q ss_pred CcEEEEEcCCCCCHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALG 96 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLG 96 (835)
.+.++|.|+.|.|||.+.-
T Consensus 216 p~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999998764
No 401
>PRK12513 RNA polymerase sigma factor; Provisional
Probab=81.57 E-value=2.2 Score=43.03 Aligned_cols=50 Identities=22% Similarity=0.198 Sum_probs=45.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.++.++....+++.|..+||+++|++.+-|-..+.++.++|-.++.
T Consensus 139 ~L~~~~r~i~~l~~~~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 188 (194)
T PRK12513 139 TLPDEQREVFLLREHGDLELEEIAELTGVPEETVKSRLRYALQKLRELLA 188 (194)
T ss_pred hCCHhHhhheeeehccCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 47888899999989999999999999999999999999999988888774
No 402
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=81.48 E-value=3.7 Score=45.81 Aligned_cols=65 Identities=18% Similarity=0.208 Sum_probs=44.3
Q ss_pred cccCCcHHHHHHHHHHHHHHhccCCCc-EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHh
Q 003262 53 IKKCSTLDQGKAVITFLDAILDKTLRS-TVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPEN 119 (835)
Q Consensus 53 v~~~~T~DQakAl~~~~~~i~ek~~r~-~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~en 119 (835)
++...+..|+.+- .++.++...+-+. .+=|||..|-||||+++-.+..+...|. +|-|-|=.|..
T Consensus 26 vEs~~~~h~~~a~-~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~-rVaVlAVDPSS 91 (323)
T COG1703 26 VESRRPDHRALAR-ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH-RVAVLAVDPSS 91 (323)
T ss_pred HhcCCchhhhHHH-HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc-EEEEEEECCCC
Confidence 3333444444432 3556666666555 6789999999999999999999998885 55555544433
No 403
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=81.31 E-value=4 Score=50.11 Aligned_cols=66 Identities=27% Similarity=0.237 Sum_probs=53.8
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CC--CcEEEecCChHhHHHHHHHHHhh
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA-GY--SNIFVTAPSPENLKTLFEFVCKG 130 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~-g~--~nI~VTAPs~enl~tlFef~~kg 130 (835)
..+.+|.+||.+ ...++.|.|+.|.|||.+|=--||.++.. |. .+|++.+-+..+.+.+-+-+.+-
T Consensus 4 ~Ln~~Q~~av~~---------~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 4 HLNPEQREAVKT---------TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred ccCHHHHHHHhC---------CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 367889888741 23589999999999999999999999975 54 57999999999988888777543
No 404
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=81.19 E-value=20 Score=39.47 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAI 99 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlai 99 (835)
.|.+++..+..++..++.....+++|+.|.||+++.-..+
T Consensus 8 g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a 47 (313)
T PRK05564 8 GHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIA 47 (313)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHH
Confidence 3777788888888888888888999999999999765443
No 405
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=81.18 E-value=3.6 Score=50.81 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=43.2
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccccc
Q 003262 82 ALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYK 137 (835)
Q Consensus 82 ~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~ 137 (835)
+.-+..|-|||.+-.++++.....|. .+.|.+|+.+=++.-++...+-++.+|..
T Consensus 73 Iaem~TGeGKTLva~lpa~l~aL~G~-~V~VvTpt~~LA~qdae~~~~l~~~LGLs 127 (745)
T TIGR00963 73 IAEMKTGEGKTLTATLPAYLNALTGK-GVHVVTVNDYLAQRDAEWMGQVYRFLGLS 127 (745)
T ss_pred eeeecCCCccHHHHHHHHHHHHHhCC-CEEEEcCCHHHHHHHHHHHHHHhccCCCe
Confidence 67789999999999888754444565 69999999999888888877666666543
No 406
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=81.05 E-value=14 Score=41.62 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=14.9
Q ss_pred CcEEEEEcCCCCCHHHHH
Q 003262 78 RSTVALLAARGRGKSAAL 95 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaL 95 (835)
.+.++|.|++|.|||++.
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 345899999999999754
No 407
>PRK12517 RNA polymerase sigma factor; Provisional
Probab=80.92 E-value=4.9 Score=40.87 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=47.4
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
.|+..++.+++...+++.+..+||+.+|++.+-+...+.++.++|-.++..-
T Consensus 128 ~Lp~~~r~v~~l~~~~g~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~l~~~ 179 (188)
T PRK12517 128 KLDPEYREPLLLQVIGGFSGEEIAEILDLNKNTVMTRLFRARNQLKEALEKP 179 (188)
T ss_pred hCCHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999999999999999999999999998888643
No 408
>PRK13531 regulatory ATPase RavA; Provisional
Probab=80.84 E-value=10 Score=45.10 Aligned_cols=49 Identities=24% Similarity=0.269 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcccCCCCccccccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHH
Q 003262 33 ERDLKDLKEQLCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAAL 95 (835)
Q Consensus 33 ~~~l~~lk~~l~~~~p~g~Lv~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaL 95 (835)
.+.+..+++.+.... ..|..+|..++-++.. +..|.|.|+.|.|||++.
T Consensus 8 ~~~i~~l~~~l~~~i-----------~gre~vI~lll~aala---g~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 8 AERISRLSSALEKGL-----------YERSHAIRLCLLAALS---GESVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHHHHHhhhc-----------cCcHHHHHHHHHHHcc---CCCEEEECCCChhHHHHH
Confidence 345666777776632 3556666555554443 357999999999999865
No 409
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=80.77 E-value=2.8 Score=52.81 Aligned_cols=55 Identities=11% Similarity=0.044 Sum_probs=40.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccc
Q 003262 80 TVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 135 (835)
Q Consensus 80 ~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lg 135 (835)
-++..|..|.|||.+-.|.+...+..|. .+.|.+|+.+=+....+.+..-...+|
T Consensus 109 gvIAeaqTGeGKTLAf~LP~l~~aL~g~-~v~IVTpTrELA~Qdae~m~~L~k~lG 163 (970)
T PRK12899 109 GFITEMQTGEGKTLTAVMPLYLNALTGK-PVHLVTVNDYLAQRDCEWVGSVLRWLG 163 (970)
T ss_pred CeEEEeCCCCChHHHHHHHHHHHHhhcC-CeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 4789999999999999988775554453 466778999887777777654433333
No 410
>PRK07408 RNA polymerase sigma factor SigF; Reviewed
Probab=80.76 E-value=4.4 Score=43.50 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=46.4
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.++.|+....+++.|..+||+.+|++...|-..+.+++++|-+++.
T Consensus 203 ~L~~~~r~vl~l~y~~~~s~~eIA~~lgvs~~~V~~~~~ra~~kLr~~l~ 252 (256)
T PRK07408 203 QLEERTREVLEFVFLHDLTQKEAAERLGISPVTVSRRVKKGLDQLKKLLQ 252 (256)
T ss_pred cCCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999999999999999999999999999999987764
No 411
>PF00196 GerE: Bacterial regulatory proteins, luxR family; InterPro: IPR000792 This domain is a DNA-binding, helix-turn-helix (HTH) domain of about 65 amino acids, present in transcription regulators of the LuxR/FixJ family of response regulators. The domain is named after Vibrio fischeri luxR, a transcriptional activator for quorum-sensing control of luminescence. LuxR-type HTH domain proteins occur in a variety of organisms. The DNA-binding HTH domain is usually located in the C-terminal region; the N-terminal region often containing an autoinducer-binding domain or a response regulatory domain. Most luxR-type regulators act as transcription activators, but some can be repressors or have a dual role for different sites. LuxR-type HTH regulators control a wide variety of activities in various biological processes. The luxR-type, DNA-binding HTH domain forms a four-helical bundle structure. The HTH motif comprises the second and third helices, known as the scaffold and recognition helix, respectively. The HTH binds DNA in the major groove, where the N-terminal part of the recognition helix makes most of the DNA contacts. The fourth helix is involved in dimerisation of gerE and traR. Signalling events by one of the four activation mechanisms described below lead to multimerisation of the regulator. The regulators bind DNA as multimers [, , ]. LuxR-type HTH proteins can be activated by one of four different mechanisms: 1) Regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation, generally on an aspartate residue, by a transmembrane kinase [, ]. Some proteins that belong to this category are: Rhizobiaceae fixJ (global regulator inducing expression of nitrogen-fixation genes in microaerobiosis) Escherichia coli and Salmonella typhimurium uhpA (activates hexose phosphate transport gene uhpT) E. coli narL and narP (activate nitrate reductase operon) Enterobacteria rcsB (regulation of exopolysaccharide biosynthesis in enteric and plant pathogenesis) Bordetella pertussis bvgA (virulence factor) Bacillus subtilis coma (involved in expression of late-expressing competence genes) 2) Regulators which are activated, or in very rare cases repressed, when bound to N-acyl homoserine lactones, which are used as quorum sensing molecules in a variety of Gram-negative bacteria []: V. fischeri luxR (activates bioluminescence operon) Agrobacterium tumefaciens traR (regulation of Ti plasmid transfer) Erwinia carotovora carR (control of carbapenem antibiotics biosynthesis) E. carotovora expR (virulence factor for soft rot disease; activates plant tissue macerating enzyme genes) Pseudomonas aeruginosa lasR (activates elastase gene lasB) Erwinia chrysanthemi echR and Erwinia stewartii esaR Pseudomonas chlororaphis phzR (positive regulator of phenazine antibiotic production) Pseudomonas aeruginosa rhlR (activates rhlAB operon and lasB gene) 3) Autonomous effector domain regulators, without a regulatory domain, represented by gerE []. B. subtilis gerE (transcription activator and repressor for the regulation of spore formation) 4) Multiple ligand-binding regulators, exemplified by malT []. E. coli malT (activates maltose operon; MalT binds ATP and maltotriose); GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3SZT_A 3CLO_A 1H0M_A 1L3L_A 3C57_B 1ZLK_B 1ZLJ_H 3C3W_B 1RNL_A 1ZG1_A ....
Probab=80.68 E-value=4.8 Score=33.36 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=35.8
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKL 707 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl 707 (835)
.||+.|..+ +....++++..+||++++++.+-|-...+.+++|+
T Consensus 3 ~LT~~E~~v-l~~l~~G~~~~eIA~~l~is~~tV~~~~~~i~~Kl 46 (58)
T PF00196_consen 3 SLTERELEV-LRLLAQGMSNKEIAEELGISEKTVKSHRRRIMKKL 46 (58)
T ss_dssp SS-HHHHHH-HHHHHTTS-HHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHH-HHHHHhcCCcchhHHhcCcchhhHHHHHHHHHHHh
Confidence 477777764 56689999999999999999999998888888876
No 412
>CHL00095 clpC Clp protease ATP binding subunit
Probab=80.68 E-value=5.7 Score=49.69 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Q 003262 61 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA 104 (835)
Q Consensus 61 QakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~ 104 (835)
..+.+..+++.+..++. .-++|.|+.|.||||+. -++|..+.
T Consensus 184 r~~ei~~~~~~L~r~~~-~n~lL~G~pGvGKTal~-~~la~~i~ 225 (821)
T CHL00095 184 REKEIERVIQILGRRTK-NNPILIGEPGVGKTAIA-EGLAQRIV 225 (821)
T ss_pred cHHHHHHHHHHHccccc-CCeEEECCCCCCHHHHH-HHHHHHHH
Confidence 34456666666655554 45689999999999987 34455554
No 413
>PF07374 DUF1492: Protein of unknown function (DUF1492); InterPro: IPR010861 This entry is represented by Streptococcus phage 7201, Orf19. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several hypothetical, highly conserved Streptococcal and related phage proteins. The function of this family is unknown.
Probab=80.66 E-value=4.1 Score=37.96 Aligned_cols=42 Identities=12% Similarity=0.151 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 003262 666 YVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKL 707 (835)
Q Consensus 666 ~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl 707 (835)
+.++.||...-+++++|++||.+|+++.+.+..+-++|++.|
T Consensus 58 ~~~r~iL~~~Yi~~~~~~~I~~~l~~S~~t~yr~~~~Al~~L 99 (100)
T PF07374_consen 58 PDERLILRMRYINKLTWEQIAEELNISRRTYYRIHKKALKEL 99 (100)
T ss_pred hhHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence 467889999999999999999999999999999999999765
No 414
>TIGR03001 Sig-70_gmx1 RNA polymerase sigma-70 factor, Myxococcales family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found in multiple copies in the order Myxococcales. This model supercedes TIGR02233, which has now been retired.
Probab=80.62 E-value=4.7 Score=43.19 Aligned_cols=50 Identities=12% Similarity=0.054 Sum_probs=45.6
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.|+.+++...+++.|..|||+.+|++.+-+...+.++.+++-+++.
T Consensus 161 ~Lp~~~R~v~~L~~~eg~S~~EIA~~Lgis~~TVk~rl~RAr~~Lr~~l~ 210 (244)
T TIGR03001 161 ALSERERHLLRLHFVDGLSMDRIGAMYQVHRSTVSRWVAQARERLLERTR 210 (244)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999988877763
No 415
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=80.60 E-value=1.7 Score=45.47 Aligned_cols=32 Identities=9% Similarity=0.020 Sum_probs=25.7
Q ss_pred CcccEEEEEeeCcccccCChHHHHHHHHHHHH
Q 003262 413 LSGARIVRIATHPSAMRLGYGSTAVELLTRYY 444 (835)
Q Consensus 413 lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~ 444 (835)
...+=+--+-+.|.|||.|+|..+|+-|..-+
T Consensus 118 ~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a 149 (202)
T KOG2488|consen 118 DPVLYCYEVQVASAYRGKGIGKFLLDTLEKLA 149 (202)
T ss_pred CeEEEEEEEeehhhhhccChHHHHHHHHHHHH
Confidence 34455667788999999999999999887654
No 416
>PRK08583 RNA polymerase sigma factor SigB; Validated
Probab=80.55 E-value=4.4 Score=43.18 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=45.7
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.|+.++....++++|..+||+.+|++.+.|-...+++++++-..+.
T Consensus 205 ~L~~~~r~vl~l~~~~g~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~l~ 254 (257)
T PRK08583 205 VLSDREKSIIQCTFIENLSQKETGERLGISQMHVSRLQRQAIKKLREAAF 254 (257)
T ss_pred hCCHHHHHHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 58899999999999999999999999999999999999999999877663
No 417
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=80.53 E-value=4.2 Score=44.04 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=34.0
Q ss_pred cccccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Q 003262 51 PLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGA 102 (835)
Q Consensus 51 ~Lv~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~a 102 (835)
.|..+..+.+|.+.+..++. . .+..++|+|+.|.|||++|.-.+...
T Consensus 58 ~l~~lg~~~~~~~~l~~~~~---~--~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 58 DLEKLGLKPENLEIFRKLLE---K--PHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred CHHHcCCCHHHHHHHHHHHh---c--CCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 45566678888887765543 2 24579999999999999996555543
No 418
>PRK05911 RNA polymerase sigma factor sigma-28; Reviewed
Probab=80.34 E-value=5 Score=43.11 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=47.6
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
.|++.++.|+....++++|..+||+.+|++...|-.+..+++++|-+++..+
T Consensus 205 ~L~~~er~vi~l~y~e~~t~~EIA~~lgis~~~V~~~~~ral~kLr~~l~~~ 256 (257)
T PRK05911 205 ALEEKERKVMALYYYEELVLKEIGKILGVSESRVSQIHSKALLKLRATLSAF 256 (257)
T ss_pred cCCHHHHHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 5889999999999999999999999999999999999999999998888653
No 419
>PRK08295 RNA polymerase factor sigma-70; Validated
Probab=80.32 E-value=4.9 Score=40.82 Aligned_cols=50 Identities=26% Similarity=0.287 Sum_probs=44.6
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
.|++.++.+++. -+++.|..+||+.+|++.+.+-..+.++.+++-+++..
T Consensus 155 ~L~~~~r~vl~l-~~e~~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~ 204 (208)
T PRK08295 155 LLSELEKEVLEL-YLDGKSYQEIAEELNRHVKSIDNALQRVKRKLEKYLEN 204 (208)
T ss_pred hCCHHHHHHHHH-HHccCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 477888888888 89999999999999999999999999999998887754
No 420
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=80.27 E-value=12 Score=45.97 Aligned_cols=64 Identities=25% Similarity=0.309 Sum_probs=49.2
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEF 126 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef 126 (835)
.+-||-+|+.++++.+..+. +..+|+|-.|.||+.++ |..++.--..++|-+|+..-+..|++=
T Consensus 10 ~~~~Q~~ai~~l~~~~~~~~--~~~~l~Gvtgs~kt~~~----a~~~~~~~~p~Lvi~~n~~~A~ql~~e 73 (655)
T TIGR00631 10 PAGDQPKAIAKLVEGLTDGE--KHQTLLGVTGSGKTFTM----ANVIAQVNRPTLVIAHNKTLAAQLYNE 73 (655)
T ss_pred CChHHHHHHHHHHHhhhcCC--CcEEEECCCCcHHHHHH----HHHHHHhCCCEEEEECCHHHHHHHHHH
Confidence 45699999999999986653 23469999999999986 444443235789999999998888754
No 421
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=79.97 E-value=1.8 Score=54.28 Aligned_cols=55 Identities=11% Similarity=0.057 Sum_probs=42.4
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccccc
Q 003262 82 ALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYK 137 (835)
Q Consensus 82 ~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~ 137 (835)
+-.+..|-|||.+..|.+......|. .+.|.+|+.+=+...++....-+..+|..
T Consensus 99 Iaem~TGeGKTL~a~Lpa~~~al~G~-~V~VvTpn~yLA~qd~e~m~~l~~~lGLt 153 (896)
T PRK13104 99 IAEMRTGEGKTLVATLPAYLNAISGR-GVHIVTVNDYLAKRDSQWMKPIYEFLGLT 153 (896)
T ss_pred cccccCCCCchHHHHHHHHHHHhcCC-CEEEEcCCHHHHHHHHHHHHHHhcccCce
Confidence 45788999999999988876555674 68999999998888887776655555543
No 422
>PRK11823 DNA repair protein RadA; Provisional
Probab=79.75 E-value=4.6 Score=47.11 Aligned_cols=38 Identities=32% Similarity=0.278 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
.+.+.|+|+.|.|||+++=..++.+...|..-+||+.-
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E 117 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE 117 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 45788999999999997755544444557666888874
No 423
>PRK06811 RNA polymerase factor sigma-70; Validated
Probab=79.55 E-value=4.5 Score=40.88 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=43.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDY 710 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~ 710 (835)
.|++.|+.|+...-+++.|..+||+.+|++.+.+...+.++.+++-+.
T Consensus 131 ~L~~~~r~i~~l~~~~g~s~~EIAe~lgis~~~V~~~l~Ra~~~Lr~~ 178 (189)
T PRK06811 131 DLEKLDREIFIRRYLLGEKIEEIAKKLGLTRSAIDNRLSRGRKKLQKN 178 (189)
T ss_pred hCCHHHHHHHHHHHHccCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 578999999998889999999999999999999999999998887654
No 424
>TIGR02846 spore_sigmaK RNA polymerase sigma-K factor. The sporulation-specific transcription factor sigma-K (also called sigma-27) is expressed in the mother cell compartment of endospore-forming bacteria such as Bacillus subtilis. Like its close homolog sigma-E (sigma-29) (see TIGR02835), also specific to the mother cell compartment, it must be activated by a proteolytic cleavage. Note that in Bacillus subtilis (and apparently also Clostridium tetani), but not in other endospore forming species such as Bacillus anthracis, the sigK gene is generated by a non-germline (mother cell only) chromosomal rearrangement that recombines coding regions for the N-terminal and C-terminal regions of sigma-K.
Probab=79.36 E-value=4.6 Score=42.34 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=43.8
Q ss_pred CccHHHHHHHHHHHh----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGM----LGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 663 ~Ls~~q~~iLla~gL----Q~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~ 711 (835)
.|++.|+.|++..-+ ++.|.++||+++|++.+.+...+.+++++|-+.+
T Consensus 174 ~L~~~~r~il~l~y~~~~~e~~S~~EIAe~lgis~~tV~~~~~rAl~~Lr~~~ 226 (227)
T TIGR02846 174 VLDGREREVIEMRYGLGDGRRKTQREIAKILGISRSYVSRIEKRALMKLYKEL 226 (227)
T ss_pred hCCHHHHHHHHHHHcCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 588999999988875 8899999999999999999999999999987654
No 425
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=79.33 E-value=4.5 Score=44.27 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhccCCCc-EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHh
Q 003262 61 QGKAVITFLDAILDKTLRS-TVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPEN 119 (835)
Q Consensus 61 QakAl~~~~~~i~ek~~r~-~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~en 119 (835)
+++.+ ++.+..++.+. .+-|||+.|-|||+++.-.+..+...|. +|-|-|=.|..
T Consensus 14 ~~~~l---l~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~-~VaVlAVDPSS 69 (266)
T PF03308_consen 14 EAREL---LKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGK-RVAVLAVDPSS 69 (266)
T ss_dssp HHHHH---HHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT---EEEEEE-GGG
T ss_pred HHHHH---HHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCC-ceEEEEECCCC
Confidence 45444 34555544333 6789999999999999998888888774 56665544443
No 426
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=79.19 E-value=6.6 Score=33.02 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=35.5
Q ss_pred ccHHHHHHHHHHHhc-------CCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 003262 664 LSYVQAAVLLYIGML-------GQDISCIQEQMKLEADRIFVLFRKVMTKLT 708 (835)
Q Consensus 664 Ls~~q~~iLla~gLQ-------~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~ 708 (835)
||+.|..+|....-+ .-+.++||++||++.+-+...+|++.+|++
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 456666665554443 457889999999999999999999999986
No 427
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=79.04 E-value=10 Score=44.54 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=16.4
Q ss_pred CCcEEEEEcCCCCCHHHHHH
Q 003262 77 LRSTVALLAARGRGKSAALG 96 (835)
Q Consensus 77 ~r~~v~LTA~RGRGKSAaLG 96 (835)
..+-++|.|+.|.|||++.-
T Consensus 87 ~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 34568999999999999764
No 428
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=78.89 E-value=3.3 Score=39.12 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=28.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCh
Q 003262 81 VALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP 117 (835)
Q Consensus 81 v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~ 117 (835)
++|+|+.|.|||+.+...+..+...|..-+|++.+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 5799999999999887777776666655567766544
No 429
>TIGR03020 EpsA transcriptional regulator EpsA. Proteins in this family include a C-terminal LuxR transcriptional regulator domain (pfam00196). These proteins are positioned proximal to either EpsH-containing exopolysaccharide biosynthesis operons of the Methylobacillus type, or the associated PEP-CTERM-containing genes.
Probab=78.14 E-value=48 Score=35.95 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=40.8
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLT 708 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~ 708 (835)
..||+.|..+|-. ..+++|-.+||+.|+++.+-+-..++.+++|+-
T Consensus 189 ~~LT~RE~evl~l-~a~G~s~~eIA~~L~IS~~TVk~hl~~i~~KL~ 234 (247)
T TIGR03020 189 GLITAREAEILAW-VRDGKTNEEIAAILGISSLTVKNHLQHIFKKLD 234 (247)
T ss_pred cCCCHHHHHHHHH-HHCCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4699999888886 579999999999999999999999999888874
No 430
>PRK07500 rpoH2 RNA polymerase factor sigma-32; Reviewed
Probab=78.09 E-value=5.7 Score=43.54 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=45.1
Q ss_pred CccHHHHHHHHHHHh--cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGM--LGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gL--Q~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.|+.|+....+ +++|..+||++||++...|-.+.++++++|-..+.
T Consensus 227 ~L~~rer~vl~lr~~~~~~~t~~EIa~~lgvs~~~V~q~~~~Al~kLr~~l~ 278 (289)
T PRK07500 227 TLNERELRIIRERRLREDGATLEALGEELGISKERVRQIEARALEKLRRALL 278 (289)
T ss_pred cCCHHHHHHHHHHhcCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 578899888888766 99999999999999999999999999999988775
No 431
>PRK11922 RNA polymerase sigma factor; Provisional
Probab=77.74 E-value=3.8 Score=42.98 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=46.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
.|++.|+.++....+++.|.++||+.+|++.+.+-..+.++..++-+++..
T Consensus 149 ~L~~~~r~i~~l~~~~g~s~~EIAe~lgis~~tVk~~l~Rar~kLr~~l~~ 199 (231)
T PRK11922 149 ALPDAFRAVFVLRVVEELSVEETAQALGLPEETVKTRLHRARRLLRESLAR 199 (231)
T ss_pred hCCHHHhhhheeehhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999988899999999999999999999999999999888888764
No 432
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=77.23 E-value=8.3 Score=38.55 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=45.5
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
..|++.|+.+|.. -.+++|..+||++||++.+.+-...+++++++-..+..+
T Consensus 5 ~~Lt~rqreVL~l-r~~GlTq~EIAe~LGiS~~tVs~ie~ra~kkLr~~~~tl 56 (141)
T PRK03975 5 SFLTERQIEVLRL-RERGLTQQEIADILGTSRANVSSIEKRARENIEKARETL 56 (141)
T ss_pred cCCCHHHHHHHHH-HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999877 579999999999999999888888888888888877776
No 433
>TIGR02941 Sigma_B RNA polymerase sigma-B factor. This sigma factor is restricted to certain lineages of the order Bacillales including Staphylococcus, Listeria and Bacillus.
Probab=77.20 E-value=6.2 Score=41.98 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=45.4
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~ 711 (835)
..|++.|+.|+....++++|..+||+.+|++.+.|-..++++++++-.++
T Consensus 204 ~~L~~~~r~ii~l~~~~g~s~~eIA~~lgis~~~V~~~~~ra~~~Lr~~~ 253 (255)
T TIGR02941 204 PILSEREKSIIHCTFEENLSQKETGERLGISQMHVSRLQRQAISKLKEAA 253 (255)
T ss_pred HcCCHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999999999998887653
No 434
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=77.15 E-value=15 Score=44.08 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCcE-EEecC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAG-YSNI-FVTAP 115 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g-~~nI-~VTAP 115 (835)
...++|+|+.|.|||+++-..++.+...+ ..+| +|++-
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD 389 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD 389 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc
Confidence 45899999999999999876666555443 2345 56653
No 435
>TIGR02850 spore_sigG RNA polymerase sigma-G factor. Members of this family comprise the Firmicutes lineage endospore formation-specific sigma factor SigG. It is also desginated stage III sporulation protein G (SpoIIIG). This protein is rather closely related to sigma-F (SpoIIAC), another sporulation sigma factor.
Probab=77.11 E-value=5.3 Score=42.65 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=44.8
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDY 710 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~ 710 (835)
..|++.++.|+....++++|..+||+++|++...|-.+.+++++++-++
T Consensus 205 ~~L~~rer~vi~~~~~~~~t~~eIA~~lgis~~~V~~~~~ral~kLr~~ 253 (254)
T TIGR02850 205 KRLNEREKMILNMRFFEGKTQMEVAEEIGISQAQVSRLEKAALKHMRKY 253 (254)
T ss_pred HcCCHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhh
Confidence 3588999999999999999999999999999999999999999998754
No 436
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=77.10 E-value=6.9 Score=38.58 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCh
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP 117 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~ 117 (835)
...++|.|+-|.|||+..-. ++.. .|.. -.||||+.
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~-l~~~--lg~~-~~v~SPTf 57 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQG-LLQG--LGIQ-GNVTSPTF 57 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHH-HHHH--cCCC-CcccCCCe
Confidence 45899999999999997743 2332 3543 35999973
No 437
>PRK08215 sporulation sigma factor SigG; Reviewed
Probab=77.06 E-value=6.1 Score=42.23 Aligned_cols=50 Identities=12% Similarity=0.192 Sum_probs=45.5
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~ 711 (835)
..|++.++.++....++++|..+||+.+|++.+.|-.+.+++++++-.++
T Consensus 208 ~~L~~~er~vi~~~~~~~~t~~eIA~~lgis~~~V~~~~~~al~kLr~~l 257 (258)
T PRK08215 208 KKLNDREKLILNLRFFQGKTQMEVAEEIGISQAQVSRLEKAALKHMRKYI 257 (258)
T ss_pred HcCCHHHHHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 35889999999999999999999999999999999999999999987765
No 438
>PRK07667 uridine kinase; Provisional
Probab=76.88 E-value=8.3 Score=39.49 Aligned_cols=49 Identities=8% Similarity=0.064 Sum_probs=33.7
Q ss_pred HHHHHhccCC-CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 68 FLDAILDKTL-RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 68 ~~~~i~ek~~-r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
+++++.+.+. +..|.|+|..|.|||++.-...+.+-..|..-.+|+.++
T Consensus 6 ~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 6 LINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred HHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 3355544333 347899999999999988766555555666556777776
No 439
>PRK09638 RNA polymerase sigma factor SigY; Reviewed
Probab=76.82 E-value=3.6 Score=40.66 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=45.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.++.+++...+.+.|.++||+.+|++.+-+-..+.++..++-+.+.
T Consensus 126 ~L~~~~r~v~~l~~~~g~s~~eIA~~l~is~~~V~~~l~ra~~~l~~~l~ 175 (176)
T PRK09638 126 KLDPEFRAPVILKHYYGYTYEEIAKMLNIPEGTVKSRVHHGIKQLRKEWG 175 (176)
T ss_pred cCCHHHhheeeehhhcCCCHHHHHHHHCCChhHHHHHHHHHHHHHHHHhc
Confidence 47888999898888999999999999999999999999999999888763
No 440
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=76.80 E-value=5 Score=47.45 Aligned_cols=59 Identities=20% Similarity=0.212 Sum_probs=43.1
Q ss_pred ccccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCh
Q 003262 52 LIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP 117 (835)
Q Consensus 52 Lv~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~ 117 (835)
|-+++-+.+|.+.+..++. +.+..+.+||+.|.|||++|=-++..+-. +..| ++|.-.|
T Consensus 237 l~~Lg~~~~~~~~~~~~~~-----~p~GliLvTGPTGSGKTTTLY~~L~~ln~-~~~n-I~TiEDP 295 (500)
T COG2804 237 LEKLGMSPFQLARLLRLLN-----RPQGLILVTGPTGSGKTTTLYAALSELNT-PERN-IITIEDP 295 (500)
T ss_pred HHHhCCCHHHHHHHHHHHh-----CCCeEEEEeCCCCCCHHHHHHHHHHHhcC-CCce-EEEeeCC
Confidence 5667888888888776655 33568999999999999999655544432 2334 7888777
No 441
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=76.78 E-value=2.5 Score=46.17 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=23.9
Q ss_pred EEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 418 IVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 418 IVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
=+-|+|||+|||+|+++.+...++.++-
T Consensus 191 EI~I~T~~~yR~kGLA~~~aa~~I~~Cl 218 (265)
T PF12746_consen 191 EIDIETHPEYRGKGLATAVAAAFILECL 218 (265)
T ss_dssp EEEEEE-CCCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECHHhhcCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999988774
No 442
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=76.71 E-value=6.4 Score=41.98 Aligned_cols=50 Identities=16% Similarity=0.166 Sum_probs=45.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.|+.+++..-+++.|..|||+.+|++.+-+-..+.++.++|-+.+.
T Consensus 116 ~Lp~~~R~v~lL~~~eg~S~~EIAe~LgiS~~tVksrL~Rark~Lr~~l~ 165 (228)
T PRK06704 116 SLNVQQSAILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRLKTVSE 165 (228)
T ss_pred hCCHHHhhHhhhHHhhCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999988877653
No 443
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=76.63 E-value=5 Score=43.87 Aligned_cols=51 Identities=20% Similarity=0.127 Sum_probs=46.8
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
..|++.|+.+++..-+++.|..+||+.||++.+-+...+.++.++|-+++.
T Consensus 141 ~~Lp~~~R~v~~L~~~~g~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~l~ 191 (324)
T TIGR02960 141 QYLPPRQRAVLLLRDVLGWRAAETAELLGTSTASVNSALQRARATLDEVGP 191 (324)
T ss_pred HhCCHHHhhHhhhHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 358899999999999999999999999999999999999999999887765
No 444
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=76.36 E-value=5.6 Score=40.35 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=29.5
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA 104 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~ 104 (835)
+.+.+|.+.+...++ . +..++|+|+.|.|||+++.. ++..+.
T Consensus 9 ~~~~~~~~~l~~~v~---~---g~~i~I~G~tGSGKTTll~a-L~~~i~ 50 (186)
T cd01130 9 TFSPLQAAYLWLAVE---A---RKNILISGGTGSGKTTLLNA-LLAFIP 50 (186)
T ss_pred CCCHHHHHHHHHHHh---C---CCEEEEECCCCCCHHHHHHH-HHhhcC
Confidence 456777776654433 2 45899999999999999965 344443
No 445
>PRK09354 recA recombinase A; Provisional
Probab=76.31 E-value=17 Score=41.45 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=34.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHh
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPEN 119 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~en 119 (835)
.+.+.|.|+.|.|||++.-.+++.+...|-.-+||++...-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~ 101 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD 101 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchH
Confidence 347789999999999988888888878887779999876444
No 446
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=75.91 E-value=6.9 Score=45.01 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH----cCCCcEEEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIA----AGYSNIFVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~----~g~~nI~VTAPs 116 (835)
...+++.|+.|.||||+++-.++.+.. .|.+=.+||+=+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt 216 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN 216 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC
Confidence 357899999999999999866665542 244334566554
No 447
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=75.72 E-value=5.5 Score=44.04 Aligned_cols=41 Identities=29% Similarity=0.321 Sum_probs=32.6
Q ss_pred CcHHHHHHHHHHHHHHhccCC----CcEEEEEcCCCCCHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTL----RSTVALLAARGRGKSAALGL 97 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~----r~~v~LTA~RGRGKSAaLGl 97 (835)
.+.+|.+.+..+++++..+++ ...++|+|.+|.|||++-..
T Consensus 108 l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~ 152 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRM 152 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHH
Confidence 567788888999998776443 35899999999999996554
No 448
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=75.70 E-value=22 Score=38.45 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=15.2
Q ss_pred CCcEEEEecccCCCHHHHHHhh
Q 003262 182 QVELLVIDEAAAIPLPVVRSLL 203 (835)
Q Consensus 182 ~adLLvIDEAAAIPlpllk~Ll 203 (835)
+-++|+|||.--++-..-..|+
T Consensus 101 ~~~ILFIDEIHRlnk~~qe~Ll 122 (233)
T PF05496_consen 101 EGDILFIDEIHRLNKAQQEILL 122 (233)
T ss_dssp TT-EEEECTCCC--HHHHHHHH
T ss_pred CCcEEEEechhhccHHHHHHHH
Confidence 4579999999999987766666
No 449
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=75.66 E-value=14 Score=43.09 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH-HHcCCCcEEEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGA-IAAGYSNIFVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~a-i~~g~~nI~VTAPs 116 (835)
+..++++|+.|.||||++.-.++.. ...|.+-.+||+=.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 3468899999999999998877654 55675444566544
No 450
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=75.55 E-value=5.8 Score=46.84 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=33.5
Q ss_pred cccccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Q 003262 51 PLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGA 102 (835)
Q Consensus 51 ~Lv~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~a 102 (835)
.|..+..+.+|.+.+..++. ..+..+++||+.|.|||++|.-++...
T Consensus 220 ~l~~Lg~~~~~~~~l~~~~~-----~~~GlilitGptGSGKTTtL~a~L~~l 266 (486)
T TIGR02533 220 DLETLGMSPELLSRFERLIR-----RPHGIILVTGPTGSGKTTTLYAALSRL 266 (486)
T ss_pred CHHHcCCCHHHHHHHHHHHh-----cCCCEEEEEcCCCCCHHHHHHHHHhcc
Confidence 45556667777777765543 224588999999999999996554443
No 451
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=75.30 E-value=43 Score=37.74 Aligned_cols=123 Identities=14% Similarity=0.180 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccccccc
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEH 139 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~ 139 (835)
-|..+-..+..++..++......++|++|.||+++. .++|.++-....+- ..|-. .++....+.-..|
T Consensus 6 W~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA-~~~A~~llC~~~~~--~~~Cg---------~C~sC~~~~~g~H 73 (325)
T PRK06871 6 WLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLI-RALAQWLMCQTPQG--DQPCG---------QCHSCHLFQAGNH 73 (325)
T ss_pred chHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHH-HHHHHHHcCCCCCC--CCCCC---------CCHHHHHHhcCCC
Confidence 455666778888888888788999999999998754 45555554321100 00100 0111222223457
Q ss_pred ccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhh
Q 003262 140 IDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLL 203 (835)
Q Consensus 140 ~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll 203 (835)
-||..+.... ++ -+.|.-.|.-...+. ..|. .+..-++|||+|-.+-..--..|+
T Consensus 74 PD~~~i~p~~---~~-~I~id~iR~l~~~~~-~~~~----~g~~KV~iI~~a~~m~~~AaNaLL 128 (325)
T PRK06871 74 PDFHILEPID---NK-DIGVDQVREINEKVS-QHAQ----QGGNKVVYIQGAERLTEAAANALL 128 (325)
T ss_pred CCEEEEcccc---CC-CCCHHHHHHHHHHHh-hccc----cCCceEEEEechhhhCHHHHHHHH
Confidence 7776554211 11 123332222211121 2222 235679999999999887666666
No 452
>PRK05572 sporulation sigma factor SigF; Validated
Probab=75.27 E-value=7.8 Score=41.29 Aligned_cols=51 Identities=10% Similarity=0.131 Sum_probs=45.8
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
..|++.++.|+...-+++.|..+||+.+|++.+.|-.+.+++++++-..+.
T Consensus 201 ~~L~~~~~~v~~l~~~~~~s~~eIA~~lgis~~~V~~~~~ral~kLr~~l~ 251 (252)
T PRK05572 201 RELDERERLIVYLRYFKDKTQSEVAKRLGISQVQVSRLEKKILKQMKEKLD 251 (252)
T ss_pred HcCCHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhc
Confidence 358899999999999999999999999999999999999999998887664
No 453
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=75.16 E-value=45 Score=37.26 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
.|..++..|..++..++......++|++|-||+++. +++|..+
T Consensus 8 Gq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A-~~~a~~l 50 (314)
T PRK07399 8 GQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAA-LCFIEGL 50 (314)
T ss_pred CHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHH-HHHHHHH
Confidence 577888889999999888889999999999999743 3444444
No 454
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=75.01 E-value=2.2 Score=49.57 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=31.1
Q ss_pred CCCcccEEEEEeeCcccccCChHHHHHHHHHHHHhc
Q 003262 411 PSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEG 446 (835)
Q Consensus 411 ~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g 446 (835)
+.-.++||.|.-||||||.=|+|...+....++...
T Consensus 237 ~ntaaariarvvvhpdyr~dglg~~sv~~a~ewI~e 272 (593)
T COG2401 237 CNTAAARIARVVVHPDYRADGLGQLSVIAALEWIIE 272 (593)
T ss_pred hhhhhhheeEEEeccccccCccchhHHHHHHHHHHH
Confidence 345679999999999999999999999988888653
No 455
>PLN03025 replication factor C subunit; Provisional
Probab=74.91 E-value=6.1 Score=43.56 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGA 102 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~a 102 (835)
.|.+++..+...+..++. ..+.++|++|.|||++.=..+..+
T Consensus 17 g~~~~~~~L~~~~~~~~~-~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 17 GNEDAVSRLQVIARDGNM-PNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CcHHHHHHHHHHHhcCCC-ceEEEECCCCCCHHHHHHHHHHHH
Confidence 355555555444444444 358899999999998775443333
No 456
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=74.83 E-value=6.6 Score=49.89 Aligned_cols=130 Identities=22% Similarity=0.316 Sum_probs=86.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHc---------CCCcEEEecCChHhHHHHHHHHHhhhccccccc-----------
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAA---------GYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKE----------- 138 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~---------g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e----------- 138 (835)
.-.+|+|+.|.||+-+-=|+|=.+|.. +--+|+--||...=+..+.+--.|.|.-+|.+-
T Consensus 127 eNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~ 206 (1230)
T KOG0952|consen 127 ENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTK 206 (1230)
T ss_pred CCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhH
Confidence 457999999999999999999888874 334688889999999988888888888555321
Q ss_pred --cccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCH---HHHHHhhc---------
Q 003262 139 --HIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPL---PVVRSLLG--------- 204 (835)
Q Consensus 139 --~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPl---pllk~Ll~--------- 204 (835)
-.+-+|+- |.|+.-+.+.|- .+ +|..-.+-..||||||.-.+-= |.|..++.
T Consensus 207 tei~~tqiiV-TTPEKwDvvTRk----~~---------~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vess 272 (1230)
T KOG0952|consen 207 TEIADTQIIV-TTPEKWDVVTRK----SV---------GDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESS 272 (1230)
T ss_pred HHHHhcCEEE-ecccceeeeeee----ec---------cchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhh
Confidence 12333333 335544444441 11 2222234578999999877642 23333321
Q ss_pred -C--CeEEEEeeccCCcccCC
Q 003262 205 -P--YLVFLSSTVNGYEGTGR 222 (835)
Q Consensus 205 -~--y~vflsSTi~GYEGTGR 222 (835)
. .+|=+|.|+.-||--++
T Consensus 273 qs~IRivgLSATlPN~eDvA~ 293 (1230)
T KOG0952|consen 273 QSMIRIVGLSATLPNYEDVAR 293 (1230)
T ss_pred hhheEEEEeeccCCCHHHHHH
Confidence 1 25669999999998765
No 457
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=74.82 E-value=6.6 Score=48.53 Aligned_cols=65 Identities=20% Similarity=0.220 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccc--------------cccceeeecCCCCCC
Q 003262 88 GRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKE--------------HIDYDIVRSSNPDLR 153 (835)
Q Consensus 88 GRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e--------------~~dy~i~~st~p~~~ 153 (835)
|-|||-+.-++++.....|. .+-|.+|+.-=.+.=++....-++.||..- .-.-+|++.||.+|.
T Consensus 101 GEGKTLvA~l~a~l~AL~G~-~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~g 179 (764)
T PRK12326 101 GEGKTLAGAIAAAGYALQGR-RVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAYACDVTYASVNEIG 179 (764)
T ss_pred CCCHHHHHHHHHHHHHHcCC-CeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHHcCCCEEcCCcccc
Confidence 99999998888776666675 577778887555554444444344333321 123467888887764
No 458
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=74.74 E-value=5.1 Score=49.91 Aligned_cols=67 Identities=18% Similarity=0.282 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcEEEecCCh-------HhHHHHHHHHHhhhccc--cc-----cccccceeeecCCCC
Q 003262 86 ARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP-------ENLKTLFEFVCKGFNAI--EY-----KEHIDYDIVRSSNPD 151 (835)
Q Consensus 86 ~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~-------enl~tlFef~~kgl~~l--gy-----~e~~dy~i~~st~p~ 151 (835)
..|-|||-+..++++.....|+ .+-|.+|+. +....+|+|+.-....+ +. ++...-+|++.||.+
T Consensus 101 ~TGEGKTLvA~l~a~l~al~G~-~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e 179 (796)
T PRK12906 101 KTGEGKTLTATLPVYLNALTGK-GVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAYNCDITYSTNSE 179 (796)
T ss_pred cCCCCCcHHHHHHHHHHHHcCC-CeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHhcCCCeecCCcc
Confidence 5799999999888888877886 566667775 55666777642211111 00 012244778888877
Q ss_pred CC
Q 003262 152 LR 153 (835)
Q Consensus 152 ~~ 153 (835)
|.
T Consensus 180 ~g 181 (796)
T PRK12906 180 LG 181 (796)
T ss_pred cc
Confidence 64
No 459
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=74.43 E-value=9.3 Score=40.17 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=30.4
Q ss_pred HHHHHhccCC--CcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecC
Q 003262 68 FLDAILDKTL--RSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAP 115 (835)
Q Consensus 68 ~~~~i~ek~~--r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAP 115 (835)
.++.+++... -.++.|.|+.|.|||.+|--.+..+... +.+=+++++.
T Consensus 22 ~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~ 73 (219)
T PF00308_consen 22 AAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE 73 (219)
T ss_dssp HHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH
T ss_pred HHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH
Confidence 3444555432 2489999999999999886554445543 3333567664
No 460
>TIGR02859 spore_sigH RNA polymerase sigma-H factor. Members of this protein family are RNA polymerase sigma-H factor for sporulation in endospore-forming bacteria. This protein is also called Sigma-30 and SigH. Although rather close homologs are detected in Listeria, Listeria does not form spores and the role of the related sigma factor in that genus is in doubt.
Probab=74.43 E-value=8 Score=38.89 Aligned_cols=47 Identities=26% Similarity=0.243 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 003262 664 LSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 664 Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~ 711 (835)
++..+..+++. .++++|..+||+++|+|.+.|-..+.++.++|-+++
T Consensus 151 l~~~~~~i~~~-~~~~~s~~eIA~~l~~s~~tV~~~l~r~r~~L~~~l 197 (198)
T TIGR02859 151 LSDLEWKVLQS-YLDGKSYQEIACDLNRHVKSIDNALQRVKRKLEKYL 197 (198)
T ss_pred cCHHHHHHHHH-HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence 34555666654 899999999999999999999988888888877654
No 461
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=74.14 E-value=5.8 Score=44.45 Aligned_cols=168 Identities=22% Similarity=0.312 Sum_probs=91.0
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccccc
Q 003262 58 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYK 137 (835)
Q Consensus 58 T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~ 137 (835)
.+-|..+...+..++..++....+.++|+.|-||+++. .++|.++-. ..|.+.+- +.....+.-.
T Consensus 6 yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~lA~~LlC-------~~~~~~~~-------c~~c~~~~~g 70 (319)
T PRK08769 6 SPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA-LALAEHVLA-------SGPDPAAA-------QRTRQLIAAG 70 (319)
T ss_pred cccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHhC-------CCCCCCCc-------chHHHHHhcC
Confidence 44677888888888888888888999999999999844 344444422 12222110 0011111224
Q ss_pred ccccceeeecCCCCC-C---cceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhh----cC--Ce
Q 003262 138 EHIDYDIVRSSNPDL-R---KPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLL----GP--YL 207 (835)
Q Consensus 138 e~~dy~i~~st~p~~-~---~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll----~~--y~ 207 (835)
.|-||.++.. .|+- + +.-++|.-.|.-.+.+ +..|.. +..-++|||+|=.+-..--..|+ .| +.
T Consensus 71 ~HPD~~~i~~-~p~~~~~k~~~~I~idqIR~l~~~~-~~~p~~----g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~ 144 (319)
T PRK08769 71 THPDLQLVSF-IPNRTGDKLRTEIVIEQVREISQKL-ALTPQY----GIAQVVIVDPADAINRAACNALLKTLEEPSPGR 144 (319)
T ss_pred CCCCEEEEec-CCCcccccccccccHHHHHHHHHHH-hhCccc----CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCC
Confidence 5788877631 1111 0 1223333333222222 222321 34679999999999886555555 34 33
Q ss_pred EE-EEeeccCCcccCCchhHHHHHHhhhcCCCCCCCcCCCccCCceeEEEeccccccCCCCchHHHHHHh
Q 003262 208 VF-LSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGL 276 (835)
Q Consensus 208 vf-lsSTi~GYEGTGR~fsLKl~~~L~~~~~~~~~~~~~~~~~r~~~ei~L~ePIRya~gDPvE~WLn~l 276 (835)
+| |.|+ + .-++++.++..+ ..+.+ +..+.+-+..||.+-
T Consensus 145 ~fiL~~~-~---------~~~lLpTIrSRC----------------q~i~~----~~~~~~~~~~~L~~~ 184 (319)
T PRK08769 145 YLWLISA-Q---------PARLPATIRSRC----------------QRLEF----KLPPAHEALAWLLAQ 184 (319)
T ss_pred eEEEEEC-C---------hhhCchHHHhhh----------------eEeeC----CCcCHHHHHHHHHHc
Confidence 33 3332 1 124577776544 23333 334456778888763
No 462
>PF12846 AAA_10: AAA-like domain
Probab=74.13 E-value=5.1 Score=42.17 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=30.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
+.++|+|..|.|||+++...+..++..|. .|+|-=|.
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g~-~~~i~D~~ 38 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRGP-RVVIFDPK 38 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcCC-CEEEEcCC
Confidence 35789999999999999988888888885 55555555
No 463
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=74.12 E-value=17 Score=38.92 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=45.0
Q ss_pred HHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHH
Q 003262 65 VITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFV 127 (835)
Q Consensus 65 l~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~ 127 (835)
+..||.|++.+..-+.+|-+...|-+=|+.||||+|+--. | .+.+.--|..+.+...-+.+
T Consensus 29 ~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~T-g-GR~vCIvp~~~~~~~~~~~l 89 (218)
T PF07279_consen 29 VAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQT-G-GRHVCIVPDEQSLSEYKKAL 89 (218)
T ss_pred HHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhc-C-CeEEEEcCChhhHHHHHHHH
Confidence 5679999998776667777777788888999998776543 3 36777778888766655443
No 464
>COG1595 RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]
Probab=74.09 E-value=8.7 Score=38.56 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=48.6
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
..|++.|+.+++..-+.+-|..|||+.+|+|.+-|...+.++.+++-..+...
T Consensus 126 ~~Lp~~~R~~~~l~~~~gls~~EIA~~l~i~~~tVks~l~ra~~~l~~~l~~~ 178 (182)
T COG1595 126 ARLPPRQREAFLLRYLEGLSYEEIAEILGISVGTVKSRLHRARKKLREQLEEA 178 (182)
T ss_pred HhCCHHHhHHhhhHhhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 35889999999999999999999999999999999999999999998887653
No 465
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=73.95 E-value=42 Score=37.72 Aligned_cols=124 Identities=16% Similarity=0.241 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccccccccc
Q 003262 62 GKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHID 141 (835)
Q Consensus 62 akAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~d 141 (835)
..+-.++... .++....++++|++|.||+++.=. +|.++-. ..|...+..- -.+.....+.-..|-|
T Consensus 7 ~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~-~a~~llC-------~~~~~~~~~C---g~C~~C~~~~~~~HpD 73 (325)
T PRK08699 7 QEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARF-AAQALLC-------ETPAPGHKPC---GECMSCHLFGQGSHPD 73 (325)
T ss_pred HHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHH-HHHHHcC-------CCCCCCCCCC---CcCHHHHHHhcCCCCC
Confidence 3344444443 345566789999999999986543 4444321 1222110000 0011111122346777
Q ss_pred ceeeecCCC--CCCc--ceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhh
Q 003262 142 YDIVRSSNP--DLRK--PIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLL 203 (835)
Q Consensus 142 y~i~~st~p--~~~~--aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll 203 (835)
|..+..+.. +-++ .-++|.-.|.-...+ +..|.. +..-++|||++.++.......|+
T Consensus 74 ~~~~~p~~~~~~~g~~~~~I~id~iR~l~~~~-~~~p~~----~~~kV~iiEp~~~Ld~~a~naLL 134 (325)
T PRK08699 74 FYEITPLSDEPENGRKLLQIKIDAVREIIDNV-YLTSVR----GGLRVILIHPAESMNLQAANSLL 134 (325)
T ss_pred EEEEecccccccccccCCCcCHHHHHHHHHHH-hhCccc----CCceEEEEechhhCCHHHHHHHH
Confidence 766643221 1111 122333333222222 123332 35678999999999987766666
No 466
>PHA00350 putative assembly protein
Probab=73.92 E-value=21 Score=41.42 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCHHHHH-HHHHHHHHHcCCCcEEEe
Q 003262 80 TVALLAARGRGKSAAL-GLAIAGAIAAGYSNIFVT 113 (835)
Q Consensus 80 ~v~LTA~RGRGKSAaL-GlaiA~ai~~g~~nI~VT 113 (835)
..++||..|.|||.-. ..-+--++..| ++++|
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~palk~G--R~V~T 35 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDG--RKVIT 35 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHHHCC--CEEEE
Confidence 4589999999999743 33344556666 68888
No 467
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=73.72 E-value=5.5 Score=44.64 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=41.0
Q ss_pred ccccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCCcEEEecCCh
Q 003262 52 LIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA---GYSNIFVTAPSP 117 (835)
Q Consensus 52 Lv~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~---g~~nI~VTAPs~ 117 (835)
+-+.|.|++|-..=--|.+ +.+. .+.-|.+||+.|.|||++| |+.|.+ ....-++|=-.|
T Consensus 101 Ip~~i~~~e~LglP~i~~~-~~~~-~~GLILVTGpTGSGKSTTl----AamId~iN~~~~~HIlTIEDP 163 (353)
T COG2805 101 IPSKIPTLEELGLPPIVRE-LAES-PRGLILVTGPTGSGKSTTL----AAMIDYINKHKAKHILTIEDP 163 (353)
T ss_pred cCccCCCHHHcCCCHHHHH-HHhC-CCceEEEeCCCCCcHHHHH----HHHHHHHhccCCcceEEecCc
Confidence 3357899999886554555 4443 3578999999999999998 555543 233455666555
No 468
>COG1485 Predicted ATPase [General function prediction only]
Probab=73.53 E-value=16 Score=41.78 Aligned_cols=119 Identities=18% Similarity=0.233 Sum_probs=71.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCcceeE
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVR 158 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aivr 158 (835)
+-+-|-|+=|||||-++-+.--.+=-....+ ---..++.-+.+.+..+.
T Consensus 66 ~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R--------~HFh~FM~~vH~~l~~l~----------------------- 114 (367)
T COG1485 66 RGLYLWGGVGRGKTMLMDLFYESLPGERKRR--------LHFHRFMARVHQRLHTLQ----------------------- 114 (367)
T ss_pred ceEEEECCCCccHHHHHHHHHhhCCcccccc--------ccHHHHHHHHHHHHHHHc-----------------------
Confidence 4578999999999999976644321111000 011234444444443331
Q ss_pred eeeeeccceeEEeeCCccccccCCCcEEEEecc-------cCCCHHHHHHhhcCCeEEEEeecc-----CCcccCCchhH
Q 003262 159 INIYRQHRQTIQYMEPHEHEKLAQVELLVIDEA-------AAIPLPVVRSLLGPYLVFLSSTVN-----GYEGTGRSLSL 226 (835)
Q Consensus 159 vni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEA-------AAIPlpllk~Ll~~y~vflsSTi~-----GYEGTGR~fsL 226 (835)
+++ -.+.|....-..++.+|++||- |+|=--++..|+..-+|+++|+-- +=.|--|..=|
T Consensus 115 -------g~~-dpl~~iA~~~~~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FL 186 (367)
T COG1485 115 -------GQT-DPLPPIADELAAETRVLCFDEFEVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFL 186 (367)
T ss_pred -------CCC-CccHHHHHHHHhcCCEEEeeeeeecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccchhHHhhH
Confidence 011 1233332233578999999997 777777888888777776555432 23567788778
Q ss_pred HHHHHhhhcC
Q 003262 227 KLLHQLEQQS 236 (835)
Q Consensus 227 Kl~~~L~~~~ 236 (835)
.+|+-|+...
T Consensus 187 P~I~li~~~~ 196 (367)
T COG1485 187 PAIDLIKSHF 196 (367)
T ss_pred HHHHHHHHhe
Confidence 8888887653
No 469
>TIGR02393 RpoD_Cterm RNA polymerase sigma factor RpoD, C-terminal domain. This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc.
Probab=73.27 E-value=8.8 Score=40.54 Aligned_cols=49 Identities=18% Similarity=0.128 Sum_probs=43.5
Q ss_pred CccHHHHHHHHHHH----hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIG----MLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 663 ~Ls~~q~~iLla~g----LQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~ 711 (835)
.|++.|+.||.... .+.+|..+||+.+|++...|-.+..++++||-...
T Consensus 176 ~L~~~er~vl~l~ygl~~~~~~t~~EIA~~lgis~~~V~q~~~~al~kLr~~~ 228 (238)
T TIGR02393 176 TLTERERKVLRMRYGLLDGRPHTLEEVGKEFNVTRERIRQIESKALRKLRHPS 228 (238)
T ss_pred hCCHHHHHHHHHHhCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHHHhhhH
Confidence 58888888888776 68999999999999999999999999999988764
No 470
>PRK07122 RNA polymerase sigma factor SigF; Reviewed
Probab=73.06 E-value=8.4 Score=41.67 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=45.5
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~ 711 (835)
..|++.|+.++....+++.|..+||+.+|++.+.+-..+.++++++-.++
T Consensus 214 ~~L~~rer~vl~l~y~~~~t~~EIA~~lgis~~~V~~~~~ral~kLr~~l 263 (264)
T PRK07122 214 AALPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKTLARLRDQL 263 (264)
T ss_pred HcCCHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHc
Confidence 35889999999999999999999999999999999999999999887664
No 471
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=73.04 E-value=7.4 Score=42.35 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=45.0
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~ 711 (835)
.|++.|+.+++..-+++.|..|||+.+|++.+-+...+.++.++|-+.+
T Consensus 115 ~L~~~~R~v~~L~~~~g~s~~EIA~~lg~s~~tVk~~l~RAr~~Lr~~~ 163 (293)
T PRK09636 115 RLSPLERAAFLLHDVFGVPFDEIASTLGRSPAACRQLASRARKHVRAAR 163 (293)
T ss_pred hCCHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC
Confidence 5899999999999999999999999999999999999999988887654
No 472
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=73.00 E-value=25 Score=39.23 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=18.8
Q ss_pred CCcEEEEecccCCCHHHHHHhh
Q 003262 182 QVELLVIDEAAAIPLPVVRSLL 203 (835)
Q Consensus 182 ~adLLvIDEAAAIPlpllk~Ll 203 (835)
+...|+|||+-.+|..+-.+|+
T Consensus 100 ~gGtL~l~~i~~L~~~~Q~~L~ 121 (326)
T PRK11608 100 DGGTLFLDELATAPMLVQEKLL 121 (326)
T ss_pred CCCeEEeCChhhCCHHHHHHHH
Confidence 3468999999999999888776
No 473
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=72.92 E-value=16 Score=40.11 Aligned_cols=118 Identities=19% Similarity=0.276 Sum_probs=67.2
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCcEEEecCChHhHHHHHHHHHhhhccccc
Q 003262 58 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-YSNIFVTAPSPENLKTLFEFVCKGFNAIEY 136 (835)
Q Consensus 58 T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g-~~nI~VTAPs~enl~tlFef~~kgl~~lgy 136 (835)
+.+-.+++..+.-+|++++ ..+++||.=|.|||.+.- |+.+....+ ..-|+|-+|+.. ..++.+-++--|.
T Consensus 33 ~a~h~e~l~~l~~~i~d~q--g~~~vtGevGsGKTv~~R-al~~s~~~d~~~~v~i~~~~~s-~~~~~~ai~~~l~---- 104 (269)
T COG3267 33 AADHNEALLMLHAAIADGQ--GILAVTGEVGSGKTVLRR-ALLASLNEDQVAVVVIDKPTLS-DATLLEAIVADLE---- 104 (269)
T ss_pred hhhhhHHHHHHHHHHhcCC--ceEEEEecCCCchhHHHH-HHHHhcCCCceEEEEecCcchh-HHHHHHHHHHHhc----
Confidence 4455678888888888874 478999999999999998 555554432 122456666543 3444444442221
Q ss_pred cccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccc-cCCCcEEEEecccCCCHHHHHHhh
Q 003262 137 KEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEK-LAQVELLVIDEAAAIPLPVVRSLL 203 (835)
Q Consensus 137 ~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~-l~~adLLvIDEAAAIPlpllk~Ll 203 (835)
.+|.++. +...++.++ .. ..+++ ....=+++||||=.+-.+.+..|-
T Consensus 105 -----------~~p~~~~---~~~~e~~~~----~L--~al~~~g~r~v~l~vdEah~L~~~~le~Lr 152 (269)
T COG3267 105 -----------SQPKVNV---NAVLEQIDR----EL--AALVKKGKRPVVLMVDEAHDLNDSALEALR 152 (269)
T ss_pred -----------cCccchh---HHHHHHHHH----HH--HHHHHhCCCCeEEeehhHhhhChhHHHHHH
Confidence 1331111 100111110 00 01122 233468999999999888887764
No 474
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=72.85 E-value=8.5 Score=41.77 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=44.6
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDY 710 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~ 710 (835)
..|++.|+.+++..-+++.|..|||+.+|++.+.+...+.++.++|-.+
T Consensus 107 ~~L~~~~R~v~~L~~~~g~s~~EIA~~lg~s~~tVr~~l~RAr~~Lr~~ 155 (281)
T TIGR02957 107 ERLSPLERAVFVLREVFDYPYEEIASIVGKSEANCRQLVSRARRHLDAR 155 (281)
T ss_pred hhCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 3589999999999999999999999999999999999999998888654
No 475
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=72.74 E-value=5.5 Score=41.31 Aligned_cols=40 Identities=20% Similarity=0.444 Sum_probs=32.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcEEEecCChH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAI-AAGYSNIFVTAPSPE 118 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai-~~g~~nI~VTAPs~e 118 (835)
++.+.|.|..|.|||.+++..+..++ ..|+ +|+|==|.-|
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~-~~ii~D~~GE 63 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKVLLEELLKKKGA-KVIIFDPHGE 63 (229)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHhcCCC-CEEEEcCCCc
Confidence 45789999999999999999999988 5554 7777766554
No 476
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=72.61 E-value=41 Score=39.95 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=18.2
Q ss_pred CcEEEEecccCCCHHHHHHhh
Q 003262 183 VELLVIDEAAAIPLPVVRSLL 203 (835)
Q Consensus 183 adLLvIDEAAAIPlpllk~Ll 203 (835)
.-.|+|||...+|..+-.+|+
T Consensus 291 ~GtL~ldei~~L~~~~Q~~Ll 311 (534)
T TIGR01817 291 GGTLFLDEIGEISPAFQAKLL 311 (534)
T ss_pred CCeEEEechhhCCHHHHHHHH
Confidence 458999999999999877776
No 477
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=72.53 E-value=19 Score=45.50 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=42.8
Q ss_pred HHHHHHHHhcccCCCCccccccCCcHHHHHHHHHHHHHHhcc--------CCCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 003262 34 RDLKDLKEQLCDDFPVGPLIKKCSTLDQGKAVITFLDAILDK--------TLRSTVALLAARGRGKSAALGLAIAGAIAA 105 (835)
Q Consensus 34 ~~l~~lk~~l~~~~p~g~Lv~~~~T~DQakAl~~~~~~i~ek--------~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~ 105 (835)
..|..|++.|.. +-..|..|+..+.++|..- +....++++|+.|.|||.+.- ++|..+..
T Consensus 555 ~~l~~l~~~L~~-----------~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~-~La~~l~~ 622 (852)
T TIGR03345 555 EAVLSLPDRLAE-----------RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETAL-ALAELLYG 622 (852)
T ss_pred HHHHHHHHHhcC-----------eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHH-HHHHHHhC
Confidence 357778888776 4457999999998888531 112258999999999998664 45655543
Q ss_pred C
Q 003262 106 G 106 (835)
Q Consensus 106 g 106 (835)
+
T Consensus 623 ~ 623 (852)
T TIGR03345 623 G 623 (852)
T ss_pred C
Confidence 3
No 478
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=72.32 E-value=10 Score=42.68 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=26.9
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGA 102 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~a 102 (835)
.+..|+..|..++. . +..++|+|+.|.|||++|.-.++..
T Consensus 129 ~~~~~~~~L~~~v~---~---~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 129 MTEAQASVIRSAID---S---RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCHHHHHHHHHHHH---c---CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45567665544333 2 3468999999999999996544433
No 479
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=72.24 E-value=5.7 Score=40.23 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.8
Q ss_pred eCcccccCChHHHHHHHHHHHHh
Q 003262 423 THPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 423 vhPd~q~mGyGsraL~~L~~~~~ 445 (835)
-.|..||.|||+.|+..+..|..
T Consensus 115 AEP~~RgKG~G~eav~~ml~y~~ 137 (185)
T KOG4135|consen 115 AEPRGRGKGIGTEAVRAMLAYAY 137 (185)
T ss_pred ecccccCCCccHHHHHHHHHHHH
Confidence 37999999999999999999875
No 480
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=72.24 E-value=8.2 Score=35.48 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=24.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChH
Q 003262 81 VALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPE 118 (835)
Q Consensus 81 v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~e 118 (835)
++|+|++|.|||++.-..+.. .|+.-+.|..++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~---l~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY---LGFPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH---TTSEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh---cccccccccccccc
Confidence 579999999999987543322 35545667776554
No 481
>TIGR02835 spore_sigmaE RNA polymerase sigma-E factor. Members of this family comprise the Firmicutes lineage endospore formation-specific sigma factor SigE, also called SpoIIGB and sigma-29. As characterized in Bacillus subtilis, this protein is synthesized as a precursor, specifically in the mother cell compartment, and must cleaved by the SpoIIGA protein to be made active.
Probab=72.18 E-value=10 Score=39.90 Aligned_cols=53 Identities=8% Similarity=0.098 Sum_probs=44.2
Q ss_pred CCccHHHHHHHHHHH----hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 662 VTLSYVQAAVLLYIG----MLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 662 ~~Ls~~q~~iLla~g----LQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
..|++.|+.+++..- +++.|..+||+.+|++.+-|-..+.++++++-+++..+
T Consensus 177 ~~Lp~~~R~ii~L~~~l~~~eg~s~~EIA~~Lgis~~tV~~~l~ra~~~LR~~l~~~ 233 (234)
T TIGR02835 177 AKLNDREKKIMELRFGLVGGTEKTQKEVADMLGISQSYISRLEKRILKRLKKEINRM 233 (234)
T ss_pred HhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 358888888777765 38899999999999999999999988888888777543
No 482
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=72.00 E-value=26 Score=42.97 Aligned_cols=68 Identities=22% Similarity=0.183 Sum_probs=51.1
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHH
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVC 128 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~ 128 (835)
...|-||.+++.++++.+..+.. ..+|+|..|.||+.++ |.+...--..++|-+|+.+-+..+.+-+.
T Consensus 11 ~~~~~~Q~~ai~~l~~~~~~~~~--~~ll~Gl~gs~ka~li----a~l~~~~~r~vLIVt~~~~~A~~l~~dL~ 78 (652)
T PRK05298 11 YKPAGDQPQAIEELVEGIEAGEK--HQTLLGVTGSGKTFTM----ANVIARLQRPTLVLAHNKTLAAQLYSEFK 78 (652)
T ss_pred CCCChHHHHHHHHHHHhhhcCCC--cEEEEcCCCcHHHHHH----HHHHHHhCCCEEEEECCHHHHHHHHHHHH
Confidence 35788999999999998865432 2459999999999885 33333212579999999999988886653
No 483
>TIGR02885 spore_sigF RNA polymerase sigma-F factor. Members of this protein family are the RNA polymerase sigma factor F. Sigma-F is specifically and universally a component of the Firmicutes lineage endospore formation program, and is expressed in the forespore to turn on expression of dozens of genes. It is closely homologous to sigma-G, which is also expressed in the forespore.
Probab=71.99 E-value=9.1 Score=40.00 Aligned_cols=49 Identities=10% Similarity=0.158 Sum_probs=43.7
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDY 710 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~ 710 (835)
..|++.++.|+...-.+++|..+||+.+|++...|-.+.++++++|-..
T Consensus 182 ~~L~~~e~~i~~~~~~~~~t~~eIA~~lgis~~~V~~~~~~al~~Lr~~ 230 (231)
T TIGR02885 182 SKLDERERQIIMLRYFKDKTQTEVANMLGISQVQVSRLEKKVLKKMKEK 230 (231)
T ss_pred HcCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 3588999989888888999999999999999999999999999888654
No 484
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=71.82 E-value=8.9 Score=40.66 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=42.9
Q ss_pred HHHHHHHHhc-cCCCcEEEEEcCCCCCHHHHHHHHHHHH--HHcCCC-cEEEecCChHhHHHHHHHHHhhh
Q 003262 65 VITFLDAILD-KTLRSTVALLAARGRGKSAALGLAIAGA--IAAGYS-NIFVTAPSPENLKTLFEFVCKGF 131 (835)
Q Consensus 65 l~~~~~~i~e-k~~r~~v~LTA~RGRGKSAaLGlaiA~a--i~~g~~-nI~VTAPs~enl~tlFef~~kgl 131 (835)
+.++.+.+.+ ....+.|+|+|..|-|||++.=- ++.- +...|. .++|+.....+...+++.+...|
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~-~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l 74 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQ-VARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQL 74 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHH-HHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeee-cccccccccccccccccccccccccccccccccccc
Confidence 4555666655 23456899999999999997633 2222 223353 36888888777777777766554
No 485
>TIGR02394 rpoS_proteo RNA polymerase sigma factor RpoS. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoS (also called sigma-38, KatF, etc.), found only in Proteobacteria. This sigma factor is induced in stationary phase (in response to the stress of nutrient limitation) and becomes the second prinicipal sigma factor at that time. RpoS is a member of the larger Sigma-70 subfamily (TIGR02937) and most closely related to RpoD (TIGR02393).
Probab=71.82 E-value=10 Score=41.21 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=45.9
Q ss_pred CCccHHHHHHHHHHH----hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 662 VTLSYVQAAVLLYIG----MLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 662 ~~Ls~~q~~iLla~g----LQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
..|++.|+.|+...- +++.|..+||+.||++.+-|-..+.+++++|-+.+..
T Consensus 221 ~~Lp~~~R~Vl~l~ygL~~~e~~s~~EIA~~Lgis~~tVk~~l~rAlkkLr~~l~~ 276 (285)
T TIGR02394 221 AELNERQREVLARRFGLLGYEPATLEEVAAEVGLTRERVRQIQVEALKKLRRILER 276 (285)
T ss_pred HcCCHHHHHHHHHHhCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 358898988888764 8999999999999999999999999999999888863
No 486
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=71.78 E-value=23 Score=43.47 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=18.4
Q ss_pred CcEEEEecccCCCHHHHHHhh
Q 003262 183 VELLVIDEAAAIPLPVVRSLL 203 (835)
Q Consensus 183 adLLvIDEAAAIPlpllk~Ll 203 (835)
...|+|||...+|..+-.+|+
T Consensus 471 ~GtL~Ldei~~L~~~~Q~~L~ 491 (686)
T PRK15429 471 KSSLFLDEVGDMPLELQPKLL 491 (686)
T ss_pred CCeEEEechhhCCHHHHHHHH
Confidence 458999999999999888776
No 487
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=71.57 E-value=19 Score=41.55 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=16.0
Q ss_pred CcEEEEEcCCCCCHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALG 96 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLG 96 (835)
.+.+.|.|++|.|||++.-
T Consensus 179 pkgvLL~GppGTGKT~LAk 197 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAK 197 (398)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999999653
No 488
>PHA02244 ATPase-like protein
Probab=71.50 E-value=22 Score=40.94 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=18.4
Q ss_pred cCCCcEEEEecccCCCHHHHHHhh
Q 003262 180 LAQVELLVIDEAAAIPLPVVRSLL 203 (835)
Q Consensus 180 l~~adLLvIDEAAAIPlpllk~Ll 203 (835)
..+..+|++||.-..+......|.
T Consensus 178 ~~~GgvLiLDEId~a~p~vq~~L~ 201 (383)
T PHA02244 178 FKKGGLFFIDEIDASIPEALIIIN 201 (383)
T ss_pred hhcCCEEEEeCcCcCCHHHHHHHH
Confidence 346789999999999877765443
No 489
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=71.47 E-value=30 Score=38.74 Aligned_cols=21 Identities=38% Similarity=0.371 Sum_probs=18.5
Q ss_pred CcEEEEecccCCCHHHHHHhh
Q 003262 183 VELLVIDEAAAIPLPVVRSLL 203 (835)
Q Consensus 183 adLLvIDEAAAIPlpllk~Ll 203 (835)
.-.|++||...+|..+-.+|+
T Consensus 94 gGtL~Ldei~~L~~~~Q~~Ll 114 (329)
T TIGR02974 94 GGTLFLDELATASLLVQEKLL 114 (329)
T ss_pred CCEEEeCChHhCCHHHHHHHH
Confidence 468999999999999988776
No 490
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=71.44 E-value=3.5 Score=35.70 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=15.5
Q ss_pred EEEEEcCCCCCHHHHHH
Q 003262 80 TVALLAARGRGKSAALG 96 (835)
Q Consensus 80 ~v~LTA~RGRGKSAaLG 96 (835)
..+|+|+.|.|||++|=
T Consensus 25 ~tli~G~nGsGKSTllD 41 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLD 41 (62)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999984
No 491
>PF14516 AAA_35: AAA-like domain
Probab=71.22 E-value=9.4 Score=42.61 Aligned_cols=60 Identities=18% Similarity=0.291 Sum_probs=40.3
Q ss_pred HHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEe---cCC--hHhHHHHHHHH
Q 003262 66 ITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVT---APS--PENLKTLFEFV 127 (835)
Q Consensus 66 ~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VT---APs--~enl~tlFef~ 127 (835)
..+.++|... .+.+.|.|+|..|||++|--.++.+-..||.-|+|- +.+ ..+...++..+
T Consensus 21 ~~~~~~i~~~--G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 21 QECYQEIVQP--GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred HHHHHHHhcC--CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHH
Confidence 3344555442 358999999999999999888888888898766553 221 34555555444
No 492
>PRK15201 fimbriae regulatory protein FimW; Provisional
Probab=71.21 E-value=12 Score=39.14 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=40.5
Q ss_pred CCCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 003262 661 PVTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLT 708 (835)
Q Consensus 661 ~~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~ 708 (835)
+..||+.|..|| .+..|+++..+||++|+++.+.+-.....+++|+-
T Consensus 131 ~~~LSpRErEVL-rLLAqGkTnKEIAe~L~IS~rTVkth~srImkKLg 177 (198)
T PRK15201 131 TRHFSVTERHLL-KLIASGYHLSETAALLSLSEEQTKSLRRSIMRKLH 177 (198)
T ss_pred CCCCCHHHHHHH-HHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 355899888776 56889999999999999999999998888888874
No 493
>TIGR00721 tfx DNA-binding protein, Tfx family. Tfx from Methanobacterium thermoautotrophicum is associated with the operon for molybdenum formyl-methanofuran dehydrogenase and binds a DNA sequence near its promoter.
Probab=71.16 E-value=13 Score=36.92 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=44.0
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 714 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~ 714 (835)
..|++.|+.++..+ .|++|..+||+.+|++.+-+-...+++++++-.+.+.+
T Consensus 5 ~~Lte~qr~VL~Lr-~~GlTq~EIAe~LgiS~stV~~~e~ra~kkLr~a~~~~ 56 (137)
T TIGR00721 5 TFLTERQIKVLELR-EKGLSQKEIAKELKTTRANVSAIEKRAMENIEKARNTL 56 (137)
T ss_pred CCCCHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHhHHHHHHHHhhHH
Confidence 35888898888775 69999999999999999999999999998887655444
No 494
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=71.00 E-value=5.4 Score=41.72 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGLAIA 100 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA 100 (835)
+.++|||++|.|||++|.....
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999987653
No 495
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=70.93 E-value=7 Score=49.27 Aligned_cols=54 Identities=15% Similarity=0.028 Sum_probs=36.5
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccc
Q 003262 82 ALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEY 136 (835)
Q Consensus 82 ~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy 136 (835)
+.-+..|-|||.+.-|.+......| ..+.|.+|+.+=.+.-.+....-++.+|.
T Consensus 99 IaEm~TGEGKTL~a~lp~~l~al~g-~~VhIvT~ndyLA~RD~e~m~~l~~~lGl 152 (908)
T PRK13107 99 IAEMRTGEGKTLTATLPAYLNALTG-KGVHVITVNDYLARRDAENNRPLFEFLGL 152 (908)
T ss_pred cccccCCCCchHHHHHHHHHHHhcC-CCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 5567899999999887776544456 45889999987665555554444444443
No 496
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=70.91 E-value=12 Score=41.88 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=26.7
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGA 102 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~a 102 (835)
.+.+|+..+...+. . +..++|+|+.|.|||+++.-.++..
T Consensus 133 ~~~~~~~~L~~~v~---~---~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 133 MTAAQREAIIAAVR---A---HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCHHHHHHHHHHHH---c---CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 34566655443332 2 4578999999999999996554443
No 497
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=70.65 E-value=1.3 Score=48.78 Aligned_cols=63 Identities=17% Similarity=0.287 Sum_probs=48.7
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC--CcEEEecCChHhHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGY--SNIFVTAPSPENLKTLFEF 126 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~--~nI~VTAPs~enl~tlFef 126 (835)
.+.-|.+|+..++. .+-|+.-|-.|.||+|+.-+.+-+.+..+. ..++|-||+.|-...+-+-
T Consensus 50 PS~IQqrAi~~Ilk-------GrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~v 114 (400)
T KOG0328|consen 50 PSAIQQRAIPQILK-------GRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKV 114 (400)
T ss_pred chHHHhhhhhhhhc-------ccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHH
Confidence 46679999887765 357899999999999998877777776653 4689999999866555443
No 498
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=70.60 E-value=8.1 Score=40.04 Aligned_cols=40 Identities=23% Similarity=0.172 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCh
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP 117 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~ 117 (835)
.+.++|+|+.|.|||++.-..+...+..|..-+||+...+
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES 59 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 4588999999999999766544444566877789998544
No 499
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=70.29 E-value=6.2 Score=46.50 Aligned_cols=71 Identities=23% Similarity=0.171 Sum_probs=52.1
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHH-HHHHHHHHHHc-----------CCCcEEEecCChHhHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAA-LGLAIAGAIAA-----------GYSNIFVTAPSPENLKTLF 124 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAa-LGlaiA~ai~~-----------g~~nI~VTAPs~enl~tlF 124 (835)
.|.=|..++-. |.+ .+-++..|..|.||++| |+=++..++.. +|-.++|-||+.|=+..+|
T Consensus 97 ptpvQk~sip~----i~~---Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ 169 (482)
T KOG0335|consen 97 PTPVQKYSIPI----ISG---GRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIY 169 (482)
T ss_pred CCcceeeccce----eec---CCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHH
Confidence 46667776642 333 34578999999999987 44455667765 3578999999999999999
Q ss_pred HHHHhhhccc
Q 003262 125 EFVCKGFNAI 134 (835)
Q Consensus 125 ef~~kgl~~l 134 (835)
+-+.|..-..
T Consensus 170 nea~k~~~~s 179 (482)
T KOG0335|consen 170 NEARKFSYLS 179 (482)
T ss_pred HHHHhhcccc
Confidence 9987765333
No 500
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=70.28 E-value=5.1 Score=39.55 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=19.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
+...+|+|++|.|||+.+ =|+..++
T Consensus 19 ~g~~vi~G~Ng~GKStil-~ai~~~L 43 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTIL-EAIRYAL 43 (202)
T ss_dssp SEEEEEEESTTSSHHHHH-HHHHHHH
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 357899999999999999 4555444
Done!