Query 003262
Match_columns 835
No_of_seqs 303 out of 734
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 19:06:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003262.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003262hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zpa_A Uncharacterized protein 100.0 6E-107 2E-111 944.5 45.9 478 53-711 172-652 (671)
2 1ghe_A Acetyltransferase; acyl 98.8 1.7E-07 5.9E-12 86.4 16.7 82 414-550 89-175 (177)
3 3dr6_A YNCA; acetyltransferase 98.7 1.4E-07 4.8E-12 86.3 13.7 86 414-551 81-168 (174)
4 4e0a_A BH1408 protein; structu 98.7 1.2E-07 4.2E-12 86.3 12.6 120 331-539 39-160 (164)
5 3efa_A Putative acetyltransfer 98.7 2.9E-07 1E-11 84.2 15.2 134 313-548 10-146 (147)
6 1q2y_A Protein YJCF, similar t 98.7 8.3E-08 2.8E-12 87.6 11.3 77 414-547 64-140 (140)
7 1z4r_A General control of amin 98.7 3.5E-07 1.2E-11 85.6 15.1 139 313-550 18-163 (168)
8 1y9w_A Acetyltransferase; stru 98.7 2E-07 6.9E-12 84.8 12.5 76 415-548 63-140 (140)
9 3upu_A ATP-dependent DNA helic 98.7 3.6E-07 1.2E-11 102.3 17.2 181 56-277 25-211 (459)
10 2r7h_A Putative D-alanine N-ac 98.7 4.8E-07 1.6E-11 84.1 15.3 83 414-548 93-176 (177)
11 1tiq_A Protease synthase and s 98.6 3.9E-07 1.3E-11 87.3 14.7 127 334-550 47-173 (180)
12 3lod_A Putative acyl-COA N-acy 98.6 9.5E-07 3.3E-11 80.9 16.4 82 414-551 73-156 (162)
13 1cjw_A Protein (serotonin N-ac 98.6 3.3E-07 1.1E-11 83.4 13.2 130 331-548 35-166 (166)
14 1w36_D RECD, exodeoxyribonucle 98.6 9.6E-07 3.3E-11 102.7 20.3 199 58-276 151-374 (608)
15 3kkw_A Putative uncharacterize 98.6 1.8E-07 6.1E-12 89.4 11.4 125 328-549 55-181 (182)
16 3ld2_A SMU.2055, putative acet 98.6 9.6E-07 3.3E-11 84.6 16.5 124 332-550 68-193 (197)
17 2x7b_A N-acetyltransferase SSO 98.6 1.7E-07 5.7E-12 88.6 10.6 80 415-548 87-168 (168)
18 1mk4_A Hypothetical protein YQ 98.6 2.3E-07 7.9E-12 84.6 10.3 81 414-548 67-157 (157)
19 1n71_A AAC(6')-II; aminoglycos 98.6 1.3E-06 4.6E-11 83.3 16.1 101 414-550 69-177 (180)
20 2q7b_A Acetyltransferase, GNAT 98.6 8.9E-07 3E-11 84.4 14.7 115 336-549 61-181 (181)
21 2fiw_A GCN5-related N-acetyltr 98.6 5.1E-07 1.7E-11 83.5 12.6 78 416-550 83-162 (172)
22 3ey5_A Acetyltransferase-like, 98.6 2.7E-06 9.2E-11 81.1 17.9 86 314-445 14-103 (181)
23 2i6c_A Putative acetyltransfer 98.6 5.1E-07 1.7E-11 82.1 12.1 123 328-549 33-159 (160)
24 3e1s_A Exodeoxyribonuclease V, 98.5 7.1E-07 2.4E-11 103.4 16.0 168 54-276 187-358 (574)
25 1kux_A Aralkylamine, serotonin 98.5 9.1E-07 3.1E-11 85.4 14.0 132 331-550 64-197 (207)
26 1s3z_A Aminoglycoside 6'-N-ace 98.5 1.9E-06 6.5E-11 79.8 15.0 91 318-445 31-125 (165)
27 3pp9_A Putative streptothricin 98.5 9.2E-07 3.2E-11 83.8 13.2 117 335-549 65-186 (187)
28 3fix_A N-acetyltransferase; te 98.5 3.8E-07 1.3E-11 86.4 10.0 32 414-445 109-140 (183)
29 2ob0_A Human MAK3 homolog; ace 98.5 2.8E-06 9.6E-11 78.8 15.6 122 333-551 33-158 (170)
30 1xeb_A Hypothetical protein PA 98.5 5.3E-07 1.8E-11 82.8 10.3 75 414-546 74-149 (150)
31 2cy2_A TTHA1209, probable acet 98.5 4.1E-06 1.4E-10 76.5 16.1 121 336-549 46-170 (174)
32 3t9y_A Acetyltransferase, GNAT 98.5 5.2E-07 1.8E-11 81.4 9.8 92 314-445 15-110 (150)
33 2cnt_A Modification of 30S rib 98.5 2.1E-06 7.2E-11 80.0 14.3 134 318-551 12-149 (160)
34 3bln_A Acetyltransferase GNAT 98.5 4.2E-06 1.4E-10 75.3 15.6 77 415-548 64-140 (143)
35 2g3a_A Acetyltransferase; stru 98.4 6.2E-07 2.1E-11 82.3 9.8 78 415-548 75-152 (152)
36 2atr_A Acetyltransferase, GNAT 98.4 1.9E-06 6.5E-11 76.7 12.7 79 320-444 14-95 (138)
37 4evy_A Aminoglycoside N(6')-ac 98.4 3E-06 1E-10 79.1 14.6 90 318-445 32-125 (166)
38 2pdo_A Acetyltransferase YPEA; 98.4 2.8E-06 9.5E-11 78.0 13.9 30 416-445 70-99 (144)
39 4h89_A GCN5-related N-acetyltr 98.4 7.5E-07 2.6E-11 84.9 10.1 80 416-548 89-173 (173)
40 3d8p_A Acetyltransferase of GN 98.4 8.4E-06 2.9E-10 74.2 16.7 65 336-445 43-108 (163)
41 1qst_A TGCN5 histone acetyl tr 98.4 1.8E-06 6E-11 80.5 12.2 81 415-550 72-156 (160)
42 2jdc_A Glyphosate N-acetyltran 98.4 1.1E-06 3.8E-11 80.5 10.4 77 413-549 67-146 (146)
43 2fia_A Acetyltransferase; stru 98.4 1.4E-06 4.9E-11 79.1 10.7 84 416-551 76-159 (162)
44 2dxq_A AGR_C_4057P, acetyltran 98.4 5.9E-06 2E-10 76.5 15.0 69 338-445 43-111 (150)
45 2ree_A CURA; GNAT, S-acetyltra 98.4 8.1E-07 2.8E-11 87.6 9.3 108 414-551 97-209 (224)
46 2qec_A Histone acetyltransfera 98.4 2.2E-06 7.7E-11 80.5 11.8 81 411-550 121-201 (204)
47 1ygh_A ADA4, protein (transcri 98.4 4.2E-06 1.4E-10 79.3 13.6 82 415-550 73-158 (164)
48 3f8k_A Protein acetyltransfera 98.4 2E-06 6.7E-11 78.8 10.6 65 331-445 39-103 (160)
49 2fe7_A Probable N-acetyltransf 98.3 6E-06 2E-10 75.4 13.1 76 330-445 41-118 (166)
50 2ae6_A Acetyltransferase, GNAT 98.3 1.3E-06 4.6E-11 82.0 8.9 80 418-549 84-165 (166)
51 3mgd_A Predicted acetyltransfe 98.3 2.2E-06 7.5E-11 77.8 10.1 32 414-445 83-114 (157)
52 3i3g_A N-acetyltransferase; ma 98.3 4.9E-06 1.7E-10 76.4 12.2 90 317-445 30-126 (161)
53 1vkc_A Putative acetyl transfe 98.3 3.9E-06 1.3E-10 77.6 11.4 72 335-445 50-121 (158)
54 2i79_A Acetyltransferase, GNAT 98.3 1.8E-05 6.1E-10 74.4 16.1 77 419-548 90-171 (172)
55 4ag7_A Glucosamine-6-phosphate 98.3 2.9E-06 9.8E-11 77.9 10.1 65 344-445 66-130 (165)
56 3gy9_A GCN5-related N-acetyltr 98.3 4.3E-06 1.5E-10 75.9 11.0 32 414-445 75-106 (150)
57 4fd4_A Arylalkylamine N-acetyl 98.3 1.8E-05 6.1E-10 76.1 15.9 67 412-532 123-189 (217)
58 1y7r_A Hypothetical protein SA 98.3 5.3E-06 1.8E-10 74.6 11.4 81 319-445 12-93 (133)
59 3s6f_A Hypothetical acetyltran 98.3 2E-06 6.8E-11 79.4 8.7 30 416-445 74-103 (145)
60 2gan_A 182AA long hypothetical 98.3 5E-06 1.7E-10 79.6 11.7 101 314-445 14-136 (190)
61 1z4e_A Transcriptional regulat 98.3 3.2E-06 1.1E-10 77.6 9.9 30 416-445 86-115 (153)
62 3owc_A Probable acetyltransfer 98.2 9.2E-06 3.1E-10 75.9 12.4 78 414-543 92-170 (188)
63 2kcw_A Uncharacterized acetylt 98.2 1.3E-05 4.6E-10 72.4 13.1 29 416-444 71-99 (147)
64 1wwz_A Hypothetical protein PH 98.2 5.5E-06 1.9E-10 77.6 10.6 31 415-445 85-115 (159)
65 3f5b_A Aminoglycoside N(6')ace 98.2 9.8E-06 3.4E-10 75.5 11.9 81 325-444 36-123 (182)
66 3g8w_A Lactococcal prophage PS 98.2 2.4E-05 8.1E-10 72.2 14.3 80 415-550 83-166 (169)
67 1qsm_A HPA2 histone acetyltran 98.2 1.1E-05 3.8E-10 72.3 11.5 32 414-445 82-113 (152)
68 1yx0_A Hypothetical protein YS 98.2 2.9E-06 9.8E-11 79.2 7.9 111 340-549 40-153 (159)
69 3dsb_A Putative acetyltransfer 98.2 1.3E-05 4.3E-10 72.1 11.7 33 414-446 83-115 (157)
70 1vhs_A Similar to phosphinothr 98.2 5.2E-06 1.8E-10 79.0 9.6 79 419-550 85-166 (175)
71 2ozh_A Hypothetical protein XC 98.2 1.3E-05 4.3E-10 72.9 11.6 80 318-444 16-98 (142)
72 2oh1_A Acetyltransferase, GNAT 98.2 8.8E-06 3E-10 75.6 10.7 32 414-445 102-133 (179)
73 4fd5_A Arylalkylamine N-acetyl 98.2 3.3E-05 1.1E-09 76.3 15.3 32 414-445 129-160 (222)
74 1u6m_A Acetyltransferase, GNAT 98.2 6.8E-06 2.3E-10 79.6 10.0 79 414-550 111-191 (199)
75 2eui_A Probable acetyltransfer 98.1 6.7E-06 2.3E-10 73.6 8.9 32 414-445 77-108 (153)
76 3exn_A Probable acetyltransfer 98.1 2.1E-05 7.1E-10 71.2 12.2 32 414-445 87-118 (160)
77 2aj6_A Hypothetical protein MW 98.1 1.5E-05 5.2E-10 74.2 11.4 89 313-445 19-120 (159)
78 1bo4_A Protein (serratia marce 98.1 4.4E-06 1.5E-10 76.7 7.6 73 333-445 63-135 (168)
79 2ge3_A Probable acetyltransfer 98.1 9.9E-06 3.4E-10 75.6 10.0 80 418-549 88-169 (170)
80 3jvn_A Acetyltransferase; alph 98.1 6.4E-06 2.2E-10 75.7 8.4 72 337-445 47-118 (166)
81 1y9k_A IAA acetyltransferase; 98.1 9.1E-06 3.1E-10 75.1 9.5 82 415-549 61-154 (157)
82 3ddd_A Putative acetyltransfer 98.1 1.1E-05 3.8E-10 83.6 10.8 81 318-445 30-116 (288)
83 2j8m_A Acetyltransferase PA486 98.1 1.1E-05 3.7E-10 75.8 9.8 81 418-551 85-168 (172)
84 2g0b_A FEEM; N-acyl transferas 98.1 7E-05 2.4E-09 75.5 16.3 153 318-551 18-182 (198)
85 3fnc_A Protein LIN0611, putati 98.1 1.1E-05 3.7E-10 73.5 9.3 32 414-445 83-114 (163)
86 2b5g_A Diamine acetyltransfera 98.1 3E-05 1E-09 71.5 12.3 30 416-445 89-118 (171)
87 3fyn_A Integron gene cassette 98.1 2E-05 6.9E-10 73.7 11.2 33 414-446 99-131 (176)
88 2r1i_A GCN5-related N-acetyltr 98.1 5E-05 1.7E-09 69.9 13.6 32 414-445 96-127 (172)
89 3eg7_A Spermidine N1-acetyltra 98.1 5.5E-05 1.9E-09 70.0 14.0 68 419-539 88-157 (176)
90 2jlm_A Putative phosphinothric 98.1 1.3E-05 4.5E-10 76.8 9.8 82 418-551 93-176 (182)
91 2fl4_A Spermine/spermidine ace 98.0 2.1E-05 7.1E-10 73.2 10.6 77 416-549 71-147 (149)
92 3e0k_A Amino-acid acetyltransf 98.0 3.4E-06 1.2E-10 77.2 5.0 31 415-445 68-98 (150)
93 2pr1_A Uncharacterized N-acety 98.0 3.7E-06 1.3E-10 79.8 5.4 72 415-548 82-153 (163)
94 3qb8_A A654L protein; GNAT N-a 98.0 1.3E-05 4.4E-10 75.9 9.1 62 416-531 108-169 (197)
95 3i9s_A Integron cassette prote 98.0 9.1E-05 3.1E-09 69.7 14.7 32 414-445 102-133 (183)
96 2pc1_A Acetyltransferase, GNAT 98.0 1.9E-05 6.6E-10 75.9 10.2 78 414-551 110-187 (201)
97 2q0y_A GCN5-related N-acetyltr 98.0 7.1E-06 2.4E-10 76.0 6.8 31 415-445 87-117 (153)
98 3t90_A Glucose-6-phosphate ace 98.0 5.7E-06 1.9E-10 74.4 5.7 31 415-445 83-113 (149)
99 2k5t_A Uncharacterized protein 98.0 9.5E-06 3.2E-10 73.9 7.0 29 416-444 61-89 (128)
100 1yr0_A AGR_C_1654P, phosphinot 98.0 2.1E-05 7.1E-10 74.1 9.5 77 418-548 86-166 (175)
101 2bei_A Diamine acetyltransfera 98.0 1.2E-05 4E-10 76.4 7.5 31 415-445 88-118 (170)
102 1ufh_A YYCN protein; alpha and 98.0 6.3E-05 2.1E-09 70.5 12.2 32 414-445 111-142 (180)
103 3frm_A Uncharacterized conserv 98.0 3.5E-05 1.2E-09 79.1 11.3 29 416-444 188-216 (254)
104 3d3s_A L-2,4-diaminobutyric ac 98.0 3.3E-05 1.1E-09 73.6 10.4 89 315-445 34-124 (189)
105 1m4i_A Aminoglycoside 2'-N-ace 97.9 3.1E-06 1.1E-10 79.9 2.6 135 319-550 22-161 (181)
106 2bue_A AAC(6')-IB; GNAT, trans 97.9 4E-05 1.4E-09 72.6 10.0 80 414-549 113-193 (202)
107 2vi7_A Acetyltransferase PA137 97.9 1.6E-05 5.6E-10 75.4 7.1 78 419-549 89-170 (177)
108 1i12_A Glucosamine-phosphate N 97.9 1.4E-05 4.8E-10 74.9 6.1 30 416-445 96-125 (160)
109 3d2m_A Putative acetylglutamat 97.9 6.5E-06 2.2E-10 92.1 4.5 80 414-549 370-455 (456)
110 2o0j_A Terminase, DNA packagin 97.9 0.00027 9.1E-09 78.4 17.0 151 49-217 156-316 (385)
111 3te4_A GH12636P, dopamine N ac 97.8 5.8E-05 2E-09 74.3 10.1 31 415-445 125-155 (215)
112 3llm_A ATP-dependent RNA helic 97.8 0.00019 6.6E-09 72.6 13.8 139 57-215 62-219 (235)
113 1yvk_A Hypothetical protein BS 97.8 3E-05 1E-09 73.3 7.2 84 415-550 63-154 (163)
114 3c26_A Putative acetyltransfer 97.8 2.5E-05 8.6E-10 81.4 7.1 85 414-551 83-167 (266)
115 2gk6_A Regulator of nonsense t 97.8 9.4E-05 3.2E-09 86.2 12.7 67 56-129 180-246 (624)
116 4b3f_X DNA-binding protein smu 97.8 0.00012 4E-09 85.5 13.2 68 54-128 187-254 (646)
117 2wjy_A Regulator of nonsense t 97.8 0.00013 4.4E-09 87.8 13.6 66 57-129 357-422 (800)
118 1on0_A YYCN protein; structura 97.7 4.3E-05 1.5E-09 71.4 6.9 31 415-445 88-118 (158)
119 1rif_A DAR protein, DNA helica 97.7 0.00031 1.1E-08 72.8 13.9 145 55-218 112-266 (282)
120 3igr_A Ribosomal-protein-S5-al 97.7 0.00011 3.6E-09 68.6 9.3 69 420-541 100-170 (184)
121 3tth_A Spermidine N1-acetyltra 97.7 0.00012 4.1E-09 67.5 9.0 68 419-539 87-156 (170)
122 2q04_A Acetoin utilization pro 97.7 0.00018 6.3E-09 73.0 11.0 73 337-444 52-124 (211)
123 2o28_A Glucosamine 6-phosphate 97.6 5.5E-05 1.9E-09 71.6 6.1 31 415-445 116-146 (184)
124 2fz4_A DNA repair protein RAD2 97.6 0.00028 9.5E-09 72.2 11.6 134 55-220 92-234 (237)
125 3cpe_A Terminase, DNA packagin 97.6 0.0011 3.7E-08 76.8 17.3 149 50-217 157-316 (592)
126 3ec4_A Putative acetyltransfer 97.6 0.00012 4.1E-09 74.1 8.3 31 415-445 157-187 (228)
127 1s7k_A Acetyl transferase; GNA 97.6 0.00023 7.7E-09 65.9 9.4 68 420-540 100-169 (182)
128 1nsl_A Probable acetyltransfer 97.6 0.00015 5.2E-09 67.4 8.2 70 419-541 97-168 (184)
129 2fck_A Ribosomal-protein-serin 97.6 0.00015 5.1E-09 67.2 8.0 70 420-541 102-172 (181)
130 3tt2_A GCN5-related N-acetyltr 97.6 0.00037 1.3E-08 71.4 11.7 31 416-446 84-114 (330)
131 3juw_A Probable GNAT-family ac 97.6 0.00017 5.9E-09 66.8 8.3 74 418-546 100-173 (175)
132 2wpx_A ORF14; transferase, ace 97.5 0.00063 2.2E-08 70.5 13.1 88 314-445 17-114 (339)
133 2vez_A Putative glucosamine 6- 97.5 7E-05 2.4E-09 71.6 5.3 32 414-445 124-155 (190)
134 3fbu_A Acetyltransferase, GNAT 97.5 0.00032 1.1E-08 64.5 9.2 73 418-541 85-157 (168)
135 3oiy_A Reverse gyrase helicase 97.5 0.00026 8.9E-09 76.8 9.6 83 33-129 4-86 (414)
136 3dkp_A Probable ATP-dependent 97.5 0.00015 5.2E-09 73.1 7.1 72 57-135 52-126 (245)
137 3h4q_A Putative acetyltransfer 97.5 0.00022 7.6E-09 67.3 7.5 81 414-549 104-187 (188)
138 4fd7_A Putative arylalkylamine 97.4 0.00015 5.2E-09 73.2 6.6 32 414-445 146-177 (238)
139 3eo4_A Uncharacterized protein 97.4 0.00039 1.3E-08 64.2 8.6 27 419-445 93-120 (164)
140 2gxq_A Heat resistant RNA depe 97.4 0.00082 2.8E-08 65.4 11.1 142 57-216 24-187 (207)
141 2xzl_A ATP-dependent helicase 97.4 0.00053 1.8E-08 82.5 11.7 67 56-129 360-426 (802)
142 1r57_A Conserved hypothetical 97.4 0.00013 4.4E-09 64.2 4.4 30 416-445 36-65 (102)
143 1yre_A Hypothetical protein PA 97.4 0.00069 2.4E-08 64.4 9.8 73 416-540 97-171 (197)
144 2xau_A PRE-mRNA-splicing facto 97.3 0.00065 2.2E-08 81.3 11.6 139 57-215 94-251 (773)
145 3fe2_A Probable ATP-dependent 97.3 0.00042 1.4E-08 70.1 8.6 143 57-215 52-218 (242)
146 2pl3_A Probable ATP-dependent 97.3 0.0003 1E-08 70.5 7.5 142 57-215 48-213 (236)
147 3r9f_A MCCE protein; microcin 97.3 0.00062 2.1E-08 64.1 9.0 70 420-540 108-177 (188)
148 3iuy_A Probable ATP-dependent 97.3 0.0008 2.7E-08 67.1 10.1 142 57-215 43-209 (228)
149 1qde_A EIF4A, translation init 97.3 0.0003 1E-08 69.7 6.8 142 57-215 37-197 (224)
150 2oca_A DAR protein, ATP-depend 97.3 0.002 6.7E-08 72.0 13.7 141 55-214 112-262 (510)
151 1vec_A ATP-dependent RNA helic 97.3 0.00012 4E-09 71.6 3.4 145 56-215 25-188 (206)
152 3iwg_A Acetyltransferase, GNAT 97.3 0.00041 1.4E-08 72.8 7.7 25 421-445 212-236 (276)
153 3ber_A Probable ATP-dependent 97.3 0.00051 1.7E-08 70.4 8.1 67 56-129 65-133 (249)
154 2zw5_A Bleomycin acetyltransfe 97.3 0.0011 3.9E-08 67.6 10.7 77 420-547 96-172 (301)
155 2va8_A SSO2462, SKI2-type heli 97.2 0.0007 2.4E-08 79.3 10.2 139 57-217 31-188 (715)
156 2qml_A BH2621 protein; structu 97.2 0.0012 4.1E-08 62.9 10.0 72 419-546 108-181 (198)
157 3tt2_A GCN5-related N-acetyltr 97.2 0.00094 3.2E-08 68.4 9.7 30 416-445 247-276 (330)
158 1t6n_A Probable ATP-dependent 97.2 0.0014 4.7E-08 64.9 10.5 65 57-128 37-103 (220)
159 1p0h_A Hypothetical protein RV 97.2 0.004 1.4E-07 64.3 14.3 26 418-443 80-105 (318)
160 3bor_A Human initiation factor 97.2 0.00028 9.7E-09 71.3 5.4 144 57-215 53-215 (237)
161 3l9o_A ATP-dependent RNA helic 97.2 0.0008 2.7E-08 83.6 10.3 133 56-216 184-333 (1108)
162 1q0u_A Bstdead; DEAD protein, 97.2 0.0004 1.4E-08 68.9 6.1 147 57-215 27-192 (219)
163 2wpx_A ORF14; transferase, ace 97.2 0.00089 3E-08 69.4 8.8 31 415-445 263-293 (339)
164 2vzy_A RV0802C; transferase, G 97.2 0.0012 4E-08 64.3 9.1 67 420-540 110-177 (218)
165 3g3s_A GCN5-related N-acetyltr 97.1 0.00049 1.7E-08 71.8 6.6 30 416-445 184-213 (249)
166 3pey_A ATP-dependent RNA helic 97.1 0.0012 4.2E-08 69.6 9.8 141 57-215 28-188 (395)
167 2ozg_A GCN5-related N-acetyltr 97.1 0.00052 1.8E-08 74.0 6.9 32 414-445 78-109 (396)
168 2fsr_A Acetyltransferase; alph 97.1 0.0013 4.6E-08 63.5 8.9 74 420-548 116-189 (195)
169 1wrb_A DJVLGB; RNA helicase, D 97.1 0.0014 4.7E-08 66.6 9.3 144 56-215 45-220 (253)
170 1p0h_A Hypothetical protein RV 97.1 0.001 3.5E-08 68.7 8.3 31 415-445 235-265 (318)
171 3sqw_A ATP-dependent RNA helic 97.1 0.0022 7.5E-08 73.4 11.8 150 56-215 43-224 (579)
172 1sqh_A Hypothetical protein CG 97.1 0.00094 3.2E-08 71.3 8.0 29 417-445 233-261 (312)
173 4a2p_A RIG-I, retinoic acid in 97.1 0.006 2.1E-07 67.8 14.8 71 55-132 6-80 (556)
174 2i4i_A ATP-dependent RNA helic 97.0 0.00088 3E-08 71.9 7.6 143 57-215 38-221 (417)
175 4a4z_A Antiviral helicase SKI2 97.0 0.0038 1.3E-07 76.8 13.9 158 36-233 25-199 (997)
176 3n7z_A Acetyltransferase, GNAT 97.0 0.00068 2.3E-08 73.6 6.2 32 414-445 75-106 (388)
177 2oxc_A Probable ATP-dependent 97.0 0.00043 1.5E-08 69.5 4.2 66 57-129 47-114 (230)
178 3ly5_A ATP-dependent RNA helic 97.0 0.0012 4.1E-08 68.1 7.5 68 57-131 77-150 (262)
179 3pzj_A Probable acetyltransfer 96.9 0.0017 5.8E-08 63.2 8.0 82 415-548 119-200 (209)
180 2i00_A Acetyltransferase, GNAT 96.9 0.00074 2.5E-08 73.4 6.1 32 414-445 90-121 (406)
181 2w58_A DNAI, primosome compone 96.9 0.0031 1.1E-07 61.6 9.8 56 60-115 33-91 (202)
182 2z10_A Ribosomal-protein-alani 96.9 0.0055 1.9E-07 58.1 11.3 71 416-540 90-163 (194)
183 3eiq_A Eukaryotic initiation f 96.9 0.0012 4E-08 70.8 7.1 143 57-215 63-225 (414)
184 1s2m_A Putative ATP-dependent 96.9 0.0023 7.8E-08 68.4 9.4 143 56-214 43-204 (400)
185 1gm5_A RECG; helicase, replica 96.9 0.0031 1.1E-07 75.7 11.3 151 56-214 368-526 (780)
186 3tcv_A GCN5-related N-acetyltr 96.9 0.0041 1.4E-07 63.2 10.6 84 415-549 126-209 (246)
187 2hv2_A Hypothetical protein; P 96.9 0.00092 3.1E-08 72.4 6.1 32 414-445 77-108 (400)
188 3ec2_A DNA replication protein 96.9 0.0086 2.9E-07 57.6 12.3 58 58-115 16-76 (180)
189 2xgj_A ATP-dependent RNA helic 96.9 0.0065 2.2E-07 74.9 13.9 134 55-216 85-235 (1010)
190 3fht_A ATP-dependent RNA helic 96.8 0.0036 1.2E-07 66.8 10.1 68 57-129 48-117 (412)
191 3h1t_A Type I site-specific re 96.8 0.0062 2.1E-07 69.6 12.6 69 54-124 176-252 (590)
192 2zj8_A DNA helicase, putative 96.8 0.00095 3.3E-08 78.5 6.0 141 57-217 24-182 (720)
193 3b6e_A Interferon-induced heli 96.8 0.0031 1.1E-07 61.3 8.7 61 55-122 32-97 (216)
194 4ava_A Lysine acetyltransferas 96.8 0.0074 2.5E-07 63.4 12.1 29 417-445 234-262 (333)
195 1hv8_A Putative ATP-dependent 96.8 0.0055 1.9E-07 64.0 11.1 143 57-215 29-189 (367)
196 1jbk_A CLPB protein; beta barr 96.8 0.015 5.2E-07 54.4 13.0 40 62-102 28-67 (195)
197 3fmo_B ATP-dependent RNA helic 96.8 0.002 6.8E-08 68.1 7.5 67 57-128 115-183 (300)
198 3i5x_A ATP-dependent RNA helic 96.7 0.0056 1.9E-07 69.2 11.3 150 56-215 94-275 (563)
199 1yk3_A Hypothetical protein RV 96.7 0.0034 1.2E-07 62.3 8.4 71 420-546 130-203 (210)
200 3tbk_A RIG-I helicase domain; 96.7 0.011 3.7E-07 65.5 13.3 69 56-131 4-76 (555)
201 2qgz_A Helicase loader, putati 96.7 0.0067 2.3E-07 64.6 11.2 56 60-115 132-190 (308)
202 3r1k_A Enhanced intracellular 96.7 0.00039 1.3E-08 77.4 1.6 32 414-445 104-135 (428)
203 2db3_A ATP-dependent RNA helic 96.6 0.0054 1.8E-07 67.7 9.8 143 57-215 79-247 (434)
204 1fuu_A Yeast initiation factor 96.6 0.002 6.8E-08 68.3 6.0 142 57-215 44-204 (394)
205 2p6r_A Afuhel308 helicase; pro 96.6 0.0015 5.1E-08 76.6 5.3 137 57-216 26-184 (702)
206 2eyq_A TRCF, transcription-rep 96.6 0.016 5.5E-07 72.3 14.6 151 56-214 603-761 (1151)
207 3sxn_A Enhanced intracellular 96.5 0.00066 2.3E-08 75.3 1.9 32 414-445 98-129 (422)
208 3fho_A ATP-dependent RNA helic 96.5 0.002 6.8E-08 72.8 5.4 141 57-215 142-302 (508)
209 1wp9_A ATP-dependent RNA helic 96.5 0.018 6.2E-07 61.6 12.6 142 56-215 9-167 (494)
210 3fmp_B ATP-dependent RNA helic 96.5 0.0047 1.6E-07 68.5 8.2 66 58-128 116-183 (479)
211 2z83_A Helicase/nucleoside tri 96.5 0.003 1E-07 70.7 6.6 118 78-216 21-155 (459)
212 2fwr_A DNA repair protein RAD2 96.5 0.0092 3.2E-07 65.9 10.4 131 54-216 91-230 (472)
213 1xti_A Probable ATP-dependent 96.4 0.0047 1.6E-07 65.5 7.5 65 57-128 31-97 (391)
214 2z0m_A 337AA long hypothetical 96.4 0.014 4.8E-07 60.3 10.5 62 57-129 17-78 (337)
215 2chg_A Replication factor C sm 96.3 0.038 1.3E-06 52.9 12.6 60 64-124 25-86 (226)
216 2ykg_A Probable ATP-dependent 96.3 0.021 7.4E-07 66.0 12.7 144 56-215 13-184 (696)
217 4a2q_A RIG-I, retinoic acid in 96.3 0.027 9.2E-07 67.1 13.7 70 55-131 247-320 (797)
218 4ddu_A Reverse gyrase; topoiso 96.2 0.017 5.9E-07 71.8 12.1 66 56-129 78-143 (1104)
219 2j0s_A ATP-dependent RNA helic 96.2 0.009 3.1E-07 64.1 8.3 66 57-129 60-127 (410)
220 3bos_A Putative DNA replicatio 96.1 0.021 7.3E-07 55.9 10.0 39 77-115 51-89 (242)
221 2v6i_A RNA helicase; membrane, 96.1 0.013 4.6E-07 64.9 9.5 117 79-216 3-136 (431)
222 1yks_A Genome polyprotein [con 96.1 0.0066 2.3E-07 67.6 6.6 118 79-216 9-142 (440)
223 1ro5_A Autoinducer synthesis p 96.1 0.012 4.2E-07 58.8 7.9 79 415-550 99-182 (201)
224 2whx_A Serine protease/ntpase/ 96.0 0.0091 3.1E-07 69.7 7.5 120 78-217 186-321 (618)
225 2jlq_A Serine protease subunit 95.9 0.01 3.4E-07 66.2 7.2 118 78-216 19-153 (451)
226 2p65_A Hypothetical protein PF 95.9 0.055 1.9E-06 50.7 11.2 36 63-99 29-64 (187)
227 2ft0_A TDP-fucosamine acetyltr 95.9 0.11 3.6E-06 52.0 13.8 24 419-445 174-197 (235)
228 1fnn_A CDC6P, cell division co 95.9 0.02 6.9E-07 60.7 9.0 72 60-131 24-98 (389)
229 1xmt_A Putative acetyltransfer 95.9 0.0062 2.1E-07 55.0 4.3 31 415-445 36-66 (103)
230 3vkw_A Replicase large subunit 95.9 0.015 5E-07 65.8 8.2 117 78-225 161-282 (446)
231 3o8b_A HCV NS3 protease/helica 95.8 0.028 9.5E-07 66.5 10.6 116 78-216 232-362 (666)
232 2wv9_A Flavivirin protease NS2 95.8 0.015 5.1E-07 68.7 8.2 118 78-215 241-374 (673)
233 1njg_A DNA polymerase III subu 95.7 0.14 4.7E-06 49.4 13.6 38 61-98 28-65 (250)
234 2orw_A Thymidine kinase; TMTK, 95.7 0.076 2.6E-06 52.3 11.8 38 79-118 4-42 (184)
235 4a2w_A RIG-I, retinoic acid in 95.6 0.041 1.4E-06 67.1 11.5 71 54-131 246-320 (936)
236 1hqc_A RUVB; extended AAA-ATPa 95.6 0.075 2.6E-06 55.2 12.0 60 63-125 22-82 (324)
237 3p2h_A AHL synthase; acyl-ACP 95.4 0.17 5.7E-06 51.0 13.2 80 414-550 96-181 (201)
238 2kjq_A DNAA-related protein; s 95.4 0.019 6.4E-07 54.8 5.9 38 78-115 36-73 (149)
239 4fcw_A Chaperone protein CLPB; 95.4 0.038 1.3E-06 57.2 8.7 59 33-103 5-71 (311)
240 3uk6_A RUVB-like 2; hexameric 95.2 0.18 6.2E-06 53.4 13.6 55 58-113 49-104 (368)
241 2qz4_A Paraplegin; AAA+, SPG7, 95.2 0.38 1.3E-05 48.2 15.1 36 78-116 39-74 (262)
242 4gl2_A Interferon-induced heli 95.2 0.01 3.5E-07 68.8 4.0 62 55-123 6-72 (699)
243 2b8t_A Thymidine kinase; deoxy 94.9 0.069 2.4E-06 54.8 8.9 120 78-231 12-142 (223)
244 1kzf_A Acyl-homoserinelactone 94.8 0.072 2.5E-06 54.8 8.7 95 393-550 98-200 (230)
245 1l8q_A Chromosomal replication 94.7 0.18 6.1E-06 53.0 11.7 38 78-115 37-74 (324)
246 3pvs_A Replication-associated 94.5 0.062 2.1E-06 60.4 7.8 107 60-217 30-146 (447)
247 1gku_B Reverse gyrase, TOP-RG; 94.3 0.035 1.2E-06 68.6 5.9 84 35-133 42-125 (1054)
248 2o8x_A Probable RNA polymerase 94.3 0.083 2.8E-06 43.0 6.3 51 662-712 14-64 (70)
249 3pfi_A Holliday junction ATP-d 94.2 0.34 1.2E-05 50.8 12.6 63 52-117 28-91 (338)
250 1jr3_A DNA polymerase III subu 94.2 0.25 8.7E-06 52.1 11.5 42 61-103 21-62 (373)
251 3n70_A Transport activator; si 94.2 0.14 4.7E-06 47.9 8.5 20 184-203 78-97 (145)
252 2v1x_A ATP-dependent DNA helic 94.2 0.12 4.1E-06 60.0 9.7 140 57-215 45-211 (591)
253 3hug_A RNA polymerase sigma fa 94.2 0.13 4.4E-06 44.9 7.6 51 663-713 37-87 (92)
254 1sxj_A Activator 1 95 kDa subu 94.1 0.24 8.3E-06 56.2 11.7 40 78-120 77-116 (516)
255 3h4m_A Proteasome-activating n 94.1 0.33 1.1E-05 49.7 11.7 20 77-96 50-69 (285)
256 3syl_A Protein CBBX; photosynt 93.8 0.79 2.7E-05 47.3 14.1 21 78-98 67-87 (309)
257 1lv7_A FTSH; alpha/beta domain 93.8 0.6 2.1E-05 47.2 12.9 20 78-97 45-64 (257)
258 1oyw_A RECQ helicase, ATP-depe 93.7 0.074 2.5E-06 60.5 6.6 119 57-195 26-152 (523)
259 1iqp_A RFCS; clamp loader, ext 93.6 0.36 1.2E-05 49.7 11.1 38 61-99 30-67 (327)
260 3dmq_A RNA polymerase-associat 93.6 0.19 6.5E-06 61.6 10.3 59 54-117 151-210 (968)
261 3d8b_A Fidgetin-like protein 1 93.6 0.81 2.8E-05 49.2 14.1 77 36-115 67-151 (357)
262 1d2n_A N-ethylmaleimide-sensit 93.6 0.43 1.5E-05 48.7 11.5 37 77-116 63-99 (272)
263 3u61_B DNA polymerase accessor 93.5 0.27 9.1E-06 51.5 10.0 52 62-116 32-83 (324)
264 3b9p_A CG5977-PA, isoform A; A 93.3 1.7 5.8E-05 44.7 15.6 19 78-96 54-72 (297)
265 1ofh_A ATP-dependent HSL prote 93.3 0.2 6.8E-06 51.4 8.5 35 78-115 50-84 (310)
266 2qp9_X Vacuolar protein sortin 93.3 0.62 2.1E-05 50.2 12.8 34 79-115 85-118 (355)
267 3rc3_A ATP-dependent RNA helic 93.3 0.13 4.6E-06 60.7 8.1 67 57-128 129-200 (677)
268 1a5t_A Delta prime, HOLB; zinc 93.3 0.68 2.3E-05 49.3 12.9 44 59-103 5-48 (334)
269 1xwi_A SKD1 protein; VPS4B, AA 93.2 0.56 1.9E-05 49.9 12.0 36 78-115 45-80 (322)
270 1ku3_A Sigma factor SIGA; heli 92.8 0.24 8.1E-06 41.3 6.8 47 662-708 9-59 (73)
271 4f92_B U5 small nuclear ribonu 92.8 0.18 6.2E-06 65.5 8.7 69 57-131 927-996 (1724)
272 3mzy_A RNA polymerase sigma-H 92.7 0.24 8.3E-06 45.8 7.4 50 663-713 109-158 (164)
273 2chq_A Replication factor C sm 92.7 0.16 5.6E-06 52.1 6.7 39 61-100 22-60 (319)
274 2zan_A Vacuolar protein sortin 92.6 0.78 2.7E-05 51.1 12.5 19 78-96 167-185 (444)
275 3e2i_A Thymidine kinase; Zn-bi 92.5 0.59 2E-05 48.2 10.5 122 79-234 29-157 (219)
276 3eie_A Vacuolar protein sortin 92.5 0.57 1.9E-05 49.5 10.8 34 78-114 51-84 (322)
277 1g5t_A COB(I)alamin adenosyltr 92.4 0.52 1.8E-05 47.7 9.8 42 181-232 119-171 (196)
278 1z63_A Helicase of the SNF2/RA 92.4 0.32 1.1E-05 53.9 9.1 62 53-117 34-96 (500)
279 3lfu_A DNA helicase II; SF1 he 92.4 0.26 8.9E-06 56.6 8.6 66 56-130 9-77 (647)
280 2p7v_B Sigma-70, RNA polymeras 92.2 0.2 6.7E-06 41.3 5.3 48 663-710 5-56 (68)
281 3vfd_A Spastin; ATPase, microt 92.1 1.7 5.7E-05 47.2 14.1 18 78-95 148-165 (389)
282 2r8r_A Sensor protein; KDPD, P 92.1 0.34 1.2E-05 50.2 8.1 44 77-121 5-49 (228)
283 3hr8_A Protein RECA; alpha and 92.0 0.28 9.6E-06 53.8 7.8 40 78-117 61-100 (356)
284 2bjv_A PSP operon transcriptio 91.8 0.67 2.3E-05 47.0 9.9 22 182-203 100-121 (265)
285 3kl4_A SRP54, signal recogniti 91.8 0.33 1.1E-05 54.6 8.2 39 78-116 97-135 (433)
286 3co5_A Putative two-component 91.8 1.4 4.7E-05 41.0 11.3 48 184-232 77-132 (143)
287 2ce7_A Cell division protein F 91.6 2.3 7.7E-05 48.3 15.0 35 78-115 49-83 (476)
288 2qby_B CDC6 homolog 3, cell di 91.2 0.38 1.3E-05 50.9 7.7 70 59-128 26-104 (384)
289 1sxj_B Activator 1 37 kDa subu 91.2 0.82 2.8E-05 46.9 10.0 40 61-101 26-65 (323)
290 2z4s_A Chromosomal replication 91.1 0.84 2.9E-05 50.8 10.7 39 78-116 130-170 (440)
291 1tty_A Sigma-A, RNA polymerase 91.1 0.45 1.5E-05 41.2 6.8 49 663-711 18-70 (87)
292 3cf0_A Transitional endoplasmi 91.1 0.54 1.8E-05 49.3 8.6 34 78-114 49-82 (301)
293 1bob_A HAT1, histone acetyltra 91.0 0.15 5.3E-06 55.2 4.4 31 415-445 214-244 (320)
294 2j9r_A Thymidine kinase; TK1, 90.9 2.4 8.1E-05 43.5 12.9 120 78-234 28-157 (214)
295 1qvr_A CLPB protein; coiled co 90.7 0.64 2.2E-05 56.0 9.9 41 61-103 175-215 (854)
296 1xx6_A Thymidine kinase; NESG, 90.7 2.6 8.8E-05 42.0 12.7 121 79-233 9-136 (191)
297 1or7_A Sigma-24, RNA polymeras 90.7 0.46 1.6E-05 45.6 7.0 53 663-715 140-192 (194)
298 2v1u_A Cell division control p 90.6 0.27 9.1E-06 51.8 5.7 55 77-131 43-103 (387)
299 4f92_B U5 small nuclear ribonu 90.5 0.6 2E-05 60.8 9.8 74 57-136 80-163 (1724)
300 1xsv_A Hypothetical UPF0122 pr 90.0 0.77 2.6E-05 42.1 7.6 51 663-713 25-75 (113)
301 2qby_A CDC6 homolog 1, cell di 90.0 0.24 8.2E-06 52.0 4.7 52 76-127 43-97 (386)
302 2cvh_A DNA repair and recombin 90.0 0.59 2E-05 45.4 7.2 36 78-116 20-55 (220)
303 3c57_A Two component transcrip 89.9 0.63 2.2E-05 41.0 6.7 46 662-708 26-71 (95)
304 3t72_q RNA polymerase sigma fa 89.8 0.75 2.6E-05 41.5 7.2 50 663-712 19-72 (99)
305 1w5s_A Origin recognition comp 89.7 0.47 1.6E-05 50.6 6.8 69 61-129 30-109 (412)
306 2r62_A Cell division protease 89.7 0.21 7.3E-06 50.6 3.9 19 78-96 44-62 (268)
307 1s7o_A Hypothetical UPF0122 pr 89.6 0.89 3E-05 41.8 7.7 51 663-713 22-72 (113)
308 1rp3_A RNA polymerase sigma fa 89.6 0.7 2.4E-05 45.5 7.5 51 662-712 186-236 (239)
309 2zr9_A Protein RECA, recombina 89.4 0.76 2.6E-05 49.9 8.2 39 78-116 61-99 (349)
310 1uaa_A REP helicase, protein ( 89.3 0.71 2.4E-05 53.8 8.5 66 57-131 3-71 (673)
311 1fse_A GERE; helix-turn-helix 89.1 0.86 2.9E-05 37.2 6.6 46 662-708 10-55 (74)
312 3u4q_A ATP-dependent helicase/ 88.7 0.74 2.5E-05 57.8 8.6 70 55-133 9-83 (1232)
313 2w00_A HSDR, R.ECOR124I; ATP-b 88.5 0.79 2.7E-05 56.8 8.4 70 55-125 270-348 (1038)
314 1ojl_A Transcriptional regulat 88.4 1.7 5.9E-05 45.8 9.9 21 183-203 97-117 (304)
315 1je8_A Nitrate/nitrite respons 88.1 0.81 2.8E-05 39.3 5.9 46 662-708 20-65 (82)
316 1sxj_D Activator 1 41 kDa subu 88.1 0.59 2E-05 48.9 6.0 38 62-100 43-80 (353)
317 1x3u_A Transcriptional regulat 87.8 0.82 2.8E-05 38.0 5.7 45 663-708 16-60 (79)
318 3dm5_A SRP54, signal recogniti 87.7 6.3 0.00021 44.5 14.4 39 78-116 100-138 (443)
319 3hu3_A Transitional endoplasmi 87.7 1.1 3.7E-05 50.9 8.4 18 78-95 238-255 (489)
320 1pjr_A PCRA; DNA repair, DNA r 87.6 1.2 4.1E-05 52.6 9.0 65 57-130 12-79 (724)
321 2r44_A Uncharacterized protein 87.4 5.1 0.00018 41.8 12.8 33 61-96 32-64 (331)
322 3ulq_B Transcriptional regulat 87.4 1 3.5E-05 39.6 6.3 46 662-708 28-73 (90)
323 4a15_A XPD helicase, ATP-depen 87.0 1.6 5.4E-05 51.0 9.4 64 58-125 5-69 (620)
324 1z3i_X Similar to RAD54-like; 86.4 3.4 0.00012 48.1 11.8 66 51-116 50-123 (644)
325 2gno_A DNA polymerase III, gam 86.1 5.6 0.00019 42.2 12.3 34 61-95 2-35 (305)
326 1v5w_A DMC1, meiotic recombina 85.5 1.1 3.7E-05 48.2 6.5 46 78-123 122-176 (343)
327 1r6b_X CLPA protein; AAA+, N-t 85.4 3.2 0.00011 49.0 11.0 41 61-103 191-231 (758)
328 1c4o_A DNA nucleotide excision 85.3 4.7 0.00016 47.3 12.3 66 56-127 8-73 (664)
329 1tf5_A Preprotein translocase 85.0 2.1 7.3E-05 51.8 9.3 71 56-136 83-153 (844)
330 1xp8_A RECA protein, recombina 84.8 1.9 6.6E-05 47.2 8.1 39 78-116 74-112 (366)
331 1p4w_A RCSB; solution structur 84.7 2.9 0.0001 37.5 7.9 46 662-708 33-78 (99)
332 1u94_A RECA protein, recombina 84.1 3.8 0.00013 44.6 10.1 39 78-116 63-101 (356)
333 2rnj_A Response regulator prot 83.9 1.1 3.6E-05 39.0 4.6 46 662-708 28-73 (91)
334 2d4p_A Hypothetical protein TT 83.9 1.3 4.5E-05 42.6 5.6 81 316-446 9-89 (141)
335 2qen_A Walker-type ATPase; unk 83.9 1.5 5.3E-05 45.2 6.6 33 79-116 32-64 (350)
336 2orv_A Thymidine kinase; TP4A 83.6 0.99 3.4E-05 46.9 4.9 39 78-118 19-58 (234)
337 1in4_A RUVB, holliday junction 83.2 4.9 0.00017 42.7 10.3 21 79-99 52-72 (334)
338 3pxg_A Negative regulator of g 82.9 2 6.9E-05 48.1 7.5 43 61-105 185-227 (468)
339 3crv_A XPD/RAD3 related DNA he 82.7 2.9 9.7E-05 47.7 8.7 64 57-127 4-67 (551)
340 2fsf_A Preprotein translocase 82.7 2.2 7.7E-05 51.7 8.1 71 56-136 74-144 (853)
341 3cmu_A Protein RECA, recombina 82.4 2.4 8.1E-05 56.0 8.7 40 78-117 1427-1466(2050)
342 3t15_A Ribulose bisphosphate c 82.4 4.2 0.00014 42.5 9.2 34 78-114 36-69 (293)
343 1um8_A ATP-dependent CLP prote 82.2 4.1 0.00014 43.6 9.3 33 78-113 72-104 (376)
344 2z43_A DNA repair and recombin 82.1 0.88 3E-05 48.4 4.0 46 78-123 107-161 (324)
345 2z0h_A DTMP kinase, thymidylat 82.0 2.5 8.6E-05 40.2 6.8 42 80-121 2-43 (197)
346 1w4r_A Thymidine kinase; type 81.6 1.3 4.3E-05 44.9 4.7 40 78-118 20-59 (195)
347 2p0w_A Histone acetyltransfera 81.6 1.1 3.6E-05 48.8 4.4 32 415-446 218-249 (324)
348 3te6_A Regulatory protein SIR3 81.4 2.7 9.3E-05 45.3 7.5 72 60-131 27-105 (318)
349 4b4t_J 26S protease regulatory 81.4 2.4 8.4E-05 47.3 7.3 46 78-128 182-238 (405)
350 1nkt_A Preprotein translocase 80.8 1.1 3.8E-05 54.6 4.7 71 56-136 111-181 (922)
351 1odf_A YGR205W, hypothetical 3 80.2 2.2 7.7E-05 45.0 6.3 26 78-103 31-56 (290)
352 2jpc_A SSRB; DNA binding prote 80.2 2.6 8.8E-05 33.3 5.2 40 668-708 3-42 (61)
353 2q1z_A RPOE, ECF SIGE; ECF sig 80.0 0.6 2E-05 44.5 1.6 49 663-711 135-183 (184)
354 2vl7_A XPD; helicase, unknown 79.6 5.1 0.00017 45.7 9.4 65 56-127 7-71 (540)
355 4b4t_L 26S protease subunit RP 79.5 3.3 0.00011 46.6 7.6 36 78-116 215-250 (437)
356 4b4t_K 26S protease regulatory 79.4 4.9 0.00017 45.1 8.9 48 77-127 205-261 (428)
357 2fna_A Conserved hypothetical 79.2 3.6 0.00012 42.4 7.4 34 79-115 31-64 (357)
358 1qvr_A CLPB protein; coiled co 79.0 1.3 4.6E-05 53.2 4.6 21 183-203 661-681 (854)
359 3pxi_A Negative regulator of g 79.0 7 0.00024 46.2 10.6 22 182-203 579-600 (758)
360 2ipc_A Preprotein translocase 78.6 1.1 3.8E-05 54.8 3.6 73 55-137 78-150 (997)
361 1r6b_X CLPA protein; AAA+, N-t 78.2 12 0.00041 44.1 12.3 22 182-203 557-578 (758)
362 2d7d_A Uvrabc system protein B 78.1 9.6 0.00033 44.7 11.3 131 56-221 12-149 (661)
363 2lfw_A PHYR sigma-like domain; 77.5 0.81 2.8E-05 43.3 1.7 50 662-711 92-141 (157)
364 3pxi_A Negative regulator of g 77.3 4.6 0.00016 47.8 8.4 43 61-105 185-227 (758)
365 3io5_A Recombination and repai 77.3 5.3 0.00018 43.6 8.1 40 78-117 28-69 (333)
366 2dhr_A FTSH; AAA+ protein, hex 77.2 12 0.0004 42.8 11.4 35 78-115 64-98 (499)
367 3dns_A Ribosomal-protein-alani 77.1 3.8 0.00013 39.3 6.2 77 418-549 48-127 (135)
368 3szt_A QCSR, quorum-sensing co 76.8 10 0.00035 38.4 9.7 46 662-708 174-219 (237)
369 1nn5_A Similar to deoxythymidy 76.6 5.8 0.0002 38.2 7.6 38 79-116 10-47 (215)
370 3szr_A Interferon-induced GTP- 76.5 12 0.00042 43.4 11.5 46 55-100 16-67 (608)
371 1rz3_A Hypothetical protein rb 76.4 6.3 0.00022 38.4 7.8 46 67-113 9-56 (201)
372 3mwy_W Chromo domain-containin 76.2 3 0.0001 49.8 6.4 59 55-116 235-295 (800)
373 1sxj_E Activator 1 40 kDa subu 75.5 1.3 4.4E-05 46.6 2.7 38 61-99 19-57 (354)
374 3shp_A Putative acetyltransfer 75.3 4.7 0.00016 37.9 6.4 36 509-544 127-164 (176)
375 3b85_A Phosphate starvation-in 75.3 2.9 0.0001 41.9 5.2 38 57-101 8-45 (208)
376 3clo_A Transcriptional regulat 74.3 4.3 0.00015 41.6 6.2 47 662-709 196-242 (258)
377 2ehv_A Hypothetical protein PH 74.2 3.9 0.00013 40.3 5.7 39 78-116 30-69 (251)
378 4akg_A Glutathione S-transfera 74.1 15 0.0005 50.1 12.6 38 56-96 1248-1285(2695)
379 2vhj_A Ntpase P4, P4; non- hyd 73.6 3.8 0.00013 44.6 5.8 34 78-114 123-156 (331)
380 2w0m_A SSO2452; RECA, SSPF, un 73.5 4.7 0.00016 39.0 6.0 39 78-116 23-61 (235)
381 1p9r_A General secretion pathw 72.9 5.5 0.00019 44.4 7.1 45 51-100 145-189 (418)
382 3c8u_A Fructokinase; YP_612366 72.6 6.6 0.00023 38.4 6.9 38 64-101 7-45 (208)
383 1sxj_C Activator 1 40 kDa subu 72.4 3.9 0.00013 43.2 5.5 42 60-103 29-70 (340)
384 2pez_A Bifunctional 3'-phospho 72.4 4.7 0.00016 38.2 5.6 35 78-112 5-39 (179)
385 1pzn_A RAD51, DNA repair and r 71.7 4.7 0.00016 43.5 6.0 46 78-124 131-186 (349)
386 1ypw_A Transitional endoplasmi 71.5 6.6 0.00023 47.2 7.8 19 78-96 238-256 (806)
387 4b4t_H 26S protease regulatory 71.5 6.8 0.00023 44.5 7.5 49 76-127 241-298 (467)
388 4b4t_M 26S protease regulatory 71.4 5.7 0.0002 44.6 6.8 48 77-127 214-270 (434)
389 4b4t_I 26S protease regulatory 71.2 7.7 0.00026 43.8 7.8 46 77-127 215-271 (437)
390 2l8b_A Protein TRAI, DNA helic 70.6 13 0.00045 37.5 8.5 128 56-225 34-168 (189)
391 2pbr_A DTMP kinase, thymidylat 69.7 9.8 0.00033 35.8 7.2 38 80-117 2-39 (195)
392 2dr3_A UPF0273 protein PH0284; 68.7 6.8 0.00023 38.4 6.0 39 78-116 23-61 (247)
393 3cmu_A Protein RECA, recombina 68.5 11 0.00037 50.0 9.3 40 78-117 1081-1120(2050)
394 2wwf_A Thymidilate kinase, put 68.0 11 0.00039 36.1 7.4 38 79-116 11-48 (212)
395 1l0o_C Sigma factor; bergerat 67.6 1.1 3.8E-05 44.0 0.0 46 662-707 197-242 (243)
396 2q0o_A Probable transcriptiona 66.9 9.4 0.00032 38.4 6.7 46 662-708 174-219 (236)
397 4eun_A Thermoresistant glucoki 66.9 6.4 0.00022 38.2 5.3 32 78-114 29-60 (200)
398 4h6u_A Alpha-tubulin N-acetylt 66.8 4.2 0.00014 41.4 4.0 25 418-442 119-143 (200)
399 3a4m_A L-seryl-tRNA(SEC) kinas 66.6 6.4 0.00022 40.2 5.5 35 79-113 5-39 (260)
400 1l3l_A Transcriptional activat 66.5 9.8 0.00033 38.2 6.7 46 662-708 172-217 (234)
401 3cmw_A Protein RECA, recombina 66.4 9.3 0.00032 49.8 8.0 42 78-119 34-75 (1706)
402 1kag_A SKI, shikimate kinase I 66.1 4 0.00014 38.1 3.6 20 79-98 5-24 (173)
403 3tr0_A Guanylate kinase, GMP k 65.7 4.9 0.00017 38.6 4.2 22 79-100 8-29 (205)
404 1tc3_C Protein (TC3 transposas 65.6 14 0.00047 26.8 5.8 37 662-698 4-40 (51)
405 2www_A Methylmalonic aciduria 64.9 14 0.0005 39.6 8.1 41 79-120 75-115 (349)
406 3a00_A Guanylate kinase, GMP k 64.9 3.9 0.00013 39.3 3.3 23 79-101 2-24 (186)
407 2plr_A DTMP kinase, probable t 64.9 7.8 0.00027 37.1 5.5 44 79-123 5-48 (213)
408 4b5o_A Alpha-tubulin N-acetylt 64.9 4.8 0.00016 40.9 4.0 26 417-442 124-149 (200)
409 4a74_A DNA repair and recombin 64.4 7.5 0.00026 37.7 5.3 49 78-126 25-82 (231)
410 2eyu_A Twitching motility prot 64.3 10 0.00035 39.2 6.5 35 78-112 25-59 (261)
411 3uie_A Adenylyl-sulfate kinase 64.0 9.1 0.00031 37.1 5.8 36 78-113 25-60 (200)
412 1zp6_A Hypothetical protein AT 63.9 5 0.00017 38.1 3.8 32 79-113 10-41 (191)
413 3qp6_A CVIR transcriptional re 63.5 9.8 0.00034 39.4 6.2 46 662-708 196-241 (265)
414 1n0w_A DNA repair protein RAD5 63.2 8.2 0.00028 37.8 5.4 46 78-123 24-78 (243)
415 2v54_A DTMP kinase, thymidylat 62.9 7.5 0.00025 37.2 4.9 36 79-116 5-40 (204)
416 2ged_A SR-beta, signal recogni 62.8 7.7 0.00026 36.5 4.9 20 78-97 48-67 (193)
417 4tmk_A Protein (thymidylate ki 62.1 8.6 0.0003 38.7 5.4 39 79-117 4-43 (213)
418 3kb2_A SPBC2 prophage-derived 62.1 5.9 0.0002 36.6 3.9 35 80-119 3-37 (173)
419 3e70_C DPA, signal recognition 62.0 13 0.00045 39.9 7.1 39 78-116 129-167 (328)
420 2x8a_A Nuclear valosin-contain 62.0 13 0.00044 38.6 6.8 46 79-127 45-99 (274)
421 2ygw_A Malonyl-COA decarboxyla 61.8 15 0.00052 41.6 7.6 112 315-451 176-292 (460)
422 1cke_A CK, MSSA, protein (cyti 61.7 6.2 0.00021 38.5 4.1 20 79-98 6-25 (227)
423 2i1q_A DNA repair and recombin 61.4 5.1 0.00018 42.0 3.7 47 78-124 98-163 (322)
424 2ewv_A Twitching motility prot 60.9 8.8 0.0003 41.8 5.5 35 78-112 136-170 (372)
425 3nwj_A ATSK2; P loop, shikimat 60.9 5.1 0.00017 41.5 3.5 42 56-97 25-67 (250)
426 1kgd_A CASK, peripheral plasma 60.4 6.2 0.00021 37.8 3.8 23 78-100 5-27 (180)
427 1lvg_A Guanylate kinase, GMP k 60.3 5.2 0.00018 39.1 3.3 23 78-100 4-26 (198)
428 3asz_A Uridine kinase; cytidin 60.0 6.7 0.00023 38.0 4.0 23 78-100 6-28 (211)
429 2yvu_A Probable adenylyl-sulfa 59.4 13 0.00044 35.4 5.8 35 78-112 13-47 (186)
430 1ye8_A Protein THEP1, hypothet 58.7 7.1 0.00024 38.0 3.9 22 80-101 2-23 (178)
431 1tf7_A KAIC; homohexamer, hexa 57.9 9.9 0.00034 43.0 5.5 37 78-114 39-76 (525)
432 2px0_A Flagellar biosynthesis 57.8 12 0.00043 39.3 5.9 38 78-115 105-143 (296)
433 1knq_A Gluconate kinase; ALFA/ 57.2 9 0.00031 35.9 4.3 20 79-98 9-28 (175)
434 1jjv_A Dephospho-COA kinase; P 57.2 7.2 0.00025 37.7 3.7 19 80-98 4-22 (206)
435 4dzz_A Plasmid partitioning pr 57.1 26 0.00087 33.4 7.5 35 181-215 74-108 (206)
436 3m6a_A ATP-dependent protease 57.0 17 0.00057 41.6 7.2 25 78-103 108-132 (543)
437 2zts_A Putative uncharacterize 56.9 14 0.00049 36.1 5.8 60 47-115 7-68 (251)
438 1l9z_H Sigma factor SIGA; heli 56.9 17 0.00056 41.0 7.0 46 663-708 375-424 (438)
439 1sq5_A Pantothenate kinase; P- 56.7 17 0.00057 38.2 6.6 23 78-100 80-102 (308)
440 4gs4_A Alpha-tubulin N-acetylt 56.7 7.9 0.00027 40.3 4.0 27 416-442 123-149 (240)
441 1nks_A Adenylate kinase; therm 56.7 11 0.00039 35.2 4.9 33 80-112 3-35 (194)
442 2j41_A Guanylate kinase; GMP, 56.6 7.6 0.00026 37.1 3.7 21 79-99 7-27 (207)
443 1ex7_A Guanylate kinase; subst 56.4 7 0.00024 38.7 3.5 21 79-99 2-22 (186)
444 1vma_A Cell division protein F 56.1 14 0.00046 39.4 5.9 37 79-115 105-141 (306)
445 1rj9_A FTSY, signal recognitio 55.4 13 0.00046 39.4 5.7 36 78-114 102-137 (304)
446 1jr3_D DNA polymerase III, del 54.9 1.5E+02 0.0051 30.9 13.7 56 70-127 11-68 (343)
447 3p32_A Probable GTPase RV1496/ 54.8 24 0.00083 37.8 7.6 41 78-119 79-119 (355)
448 3b9q_A Chloroplast SRP recepto 54.7 15 0.00052 38.8 6.0 35 79-114 101-135 (302)
449 1vht_A Dephospho-COA kinase; s 54.6 17 0.0006 35.3 6.0 20 79-98 5-24 (218)
450 2if2_A Dephospho-COA kinase; a 54.5 8.2 0.00028 37.2 3.5 19 80-98 3-21 (204)
451 3tqc_A Pantothenate kinase; bi 54.1 21 0.00071 38.4 7.0 54 48-104 61-117 (321)
452 1s96_A Guanylate kinase, GMP k 54.1 8.3 0.00028 38.9 3.6 24 78-101 16-39 (219)
453 3tau_A Guanylate kinase, GMP k 53.8 9.6 0.00033 37.4 4.0 23 78-100 8-30 (208)
454 2i3b_A HCR-ntpase, human cance 53.6 10 0.00035 37.4 4.1 27 80-106 3-29 (189)
455 1e9r_A Conjugal transfer prote 53.4 15 0.00051 40.1 5.8 44 78-122 53-96 (437)
456 1zu4_A FTSY; GTPase, signal re 53.3 17 0.00056 38.9 6.0 38 78-115 105-142 (320)
457 3jvv_A Twitching mobility prot 53.0 15 0.0005 40.0 5.6 26 78-103 123-148 (356)
458 2ozu_A Histone acetyltransfera 52.8 6.3 0.00022 42.0 2.5 23 417-439 147-169 (284)
459 3t61_A Gluconokinase; PSI-biol 52.7 11 0.00036 36.5 4.0 20 79-98 19-38 (202)
460 1ixz_A ATP-dependent metallopr 52.7 31 0.0011 34.4 7.7 33 79-114 50-82 (254)
461 2jeo_A Uridine-cytidine kinase 52.6 9.7 0.00033 38.3 3.9 23 78-100 25-47 (245)
462 3lnc_A Guanylate kinase, GMP k 52.4 5.8 0.0002 39.4 2.1 22 78-99 27-48 (231)
463 1cr0_A DNA primase/helicase; R 52.1 19 0.00064 37.0 6.0 37 78-114 35-72 (296)
464 2qm8_A GTPase/ATPase; G protei 52.1 14 0.00048 39.6 5.2 40 78-118 55-94 (337)
465 1qf9_A UMP/CMP kinase, protein 52.0 12 0.00041 35.0 4.2 19 79-97 7-25 (194)
466 3cf2_A TER ATPase, transitiona 51.9 17 0.00059 43.9 6.4 34 78-116 238-273 (806)
467 1z6g_A Guanylate kinase; struc 51.7 8.9 0.0003 38.1 3.4 23 78-100 23-45 (218)
468 3kta_A Chromosome segregation 51.7 8 0.00027 36.5 2.9 18 79-96 27-44 (182)
469 2c9o_A RUVB-like 1; hexameric 51.4 24 0.00083 39.1 7.2 52 63-115 47-99 (456)
470 2grj_A Dephospho-COA kinase; T 50.4 10 0.00036 37.4 3.6 25 74-98 8-32 (192)
471 3to7_A Histone acetyltransfera 50.4 7.3 0.00025 41.4 2.5 23 417-439 142-164 (276)
472 1jhg_A Trp operon repressor; c 50.4 30 0.001 31.5 6.3 47 672-719 50-97 (101)
473 4gp7_A Metallophosphoesterase; 50.4 8 0.00027 36.8 2.7 19 79-97 10-28 (171)
474 2og2_A Putative signal recogni 50.1 20 0.00067 39.2 6.0 35 79-114 158-192 (359)
475 1y63_A LMAJ004144AAA protein; 50.0 13 0.00043 35.7 4.1 19 79-97 11-29 (184)
476 3lw7_A Adenylate kinase relate 49.6 8.3 0.00028 35.2 2.6 19 79-97 2-20 (179)
477 2a6h_F RNA polymerase sigma fa 49.6 17 0.00058 40.5 5.5 46 663-708 360-409 (423)
478 3cmw_A Protein RECA, recombina 49.4 24 0.00082 46.1 7.5 161 78-276 1431-1649(1706)
479 2pq8_A Probable histone acetyl 49.3 7.8 0.00027 41.3 2.6 23 417-439 142-164 (278)
480 4eaq_A DTMP kinase, thymidylat 49.1 20 0.00067 36.1 5.5 33 79-113 27-59 (229)
481 2bdt_A BH3686; alpha-beta prot 49.1 10 0.00036 36.0 3.3 21 79-99 3-23 (189)
482 2pcj_A ABC transporter, lipopr 48.9 9 0.00031 38.6 2.9 21 78-98 30-50 (224)
483 4edh_A DTMP kinase, thymidylat 48.9 25 0.00085 35.2 6.2 39 79-117 7-45 (213)
484 4ag6_A VIRB4 ATPase, type IV s 48.8 16 0.00054 39.4 5.0 41 78-119 35-75 (392)
485 2ou2_A Histone acetyltransfera 48.7 8 0.00027 41.2 2.5 23 417-439 140-162 (280)
486 1m7g_A Adenylylsulfate kinase; 48.6 31 0.0011 33.5 6.8 35 78-112 25-60 (211)
487 2cbz_A Multidrug resistance-as 48.3 10 0.00035 38.5 3.3 21 78-98 31-51 (237)
488 3lv8_A DTMP kinase, thymidylat 48.3 34 0.0012 35.0 7.2 42 79-120 28-70 (236)
489 1mv5_A LMRA, multidrug resista 48.3 10 0.00034 38.6 3.2 21 78-98 28-48 (243)
490 1ly1_A Polynucleotide kinase; 48.1 15 0.00051 34.1 4.1 18 79-96 3-20 (181)
491 2yhs_A FTSY, cell division pro 48.0 19 0.00064 41.4 5.6 35 78-113 293-327 (503)
492 1uf9_A TT1252 protein; P-loop, 47.8 15 0.00051 35.0 4.1 21 78-98 8-28 (203)
493 2bbw_A Adenylate kinase 4, AK4 47.7 14 0.00049 36.9 4.2 21 79-99 28-48 (246)
494 3ney_A 55 kDa erythrocyte memb 47.6 13 0.00046 37.1 3.9 23 78-100 19-41 (197)
495 3cm0_A Adenylate kinase; ATP-b 47.4 14 0.00048 34.7 3.9 20 79-98 5-24 (186)
496 1gtv_A TMK, thymidylate kinase 47.2 5.6 0.00019 38.4 1.1 28 80-107 2-29 (214)
497 4hkf_A Alpha-tubulin N-acetylt 47.2 14 0.00049 37.2 4.0 28 415-442 114-141 (191)
498 1kht_A Adenylate kinase; phosp 47.0 23 0.00078 33.1 5.3 35 79-113 4-38 (192)
499 1znw_A Guanylate kinase, GMP k 47.0 13 0.00045 36.2 3.7 22 78-99 20-41 (207)
500 2rhm_A Putative kinase; P-loop 46.9 16 0.00054 34.5 4.2 20 79-98 6-25 (193)
No 1
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=100.00 E-value=5.9e-107 Score=944.53 Aligned_cols=478 Identities=26% Similarity=0.360 Sum_probs=420.5
Q ss_pred cccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhc
Q 003262 53 IKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFN 132 (835)
Q Consensus 53 v~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~ 132 (835)
...|.|.||++||.+|++.+ ..+++|||+|||||||++|+++|.++ .+++||||+++|+++||+|+.+
T Consensus 172 ~~~~~T~dQ~~al~~~~~~~-----~~~~vlta~RGRGKSa~lG~~~a~~~----~~~~vtAP~~~a~~~l~~~~~~--- 239 (671)
T 2zpa_A 172 ATGAPQPEQQQLLKQLMTMP-----PGVAAVTAARGRGKSALAGQLISRIA----GRAIVTAPAKASTDVLAQFAGE--- 239 (671)
T ss_dssp CCSSCCHHHHHHHHHHTTCC-----SEEEEEEECTTSSHHHHHHHHHHHSS----SCEEEECSSCCSCHHHHHHHGG---
T ss_pred CCCCCCHHHHHHHHHHHHhh-----hCeEEEecCCCCCHHHHHHHHHHHHH----hCcEEECCCHHHHHHHHHHhhC---
Confidence 34699999999999888754 24689999999999999999999885 4689999999999999999742
Q ss_pred cccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccc-cccCCCcEEEEecccCCCHHHHHHhhcCC-eEEE
Q 003262 133 AIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEH-EKLAQVELLVIDEAAAIPLPVVRSLLGPY-LVFL 210 (835)
Q Consensus 133 ~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~-~~l~~adLLvIDEAAAIPlpllk~Ll~~y-~vfl 210 (835)
+|+|++|+++ ....++||||||||||||+|+|++|+++| +|||
T Consensus 240 -----------------------------------~i~~~~Pd~~~~~~~~~dlliVDEAAaIp~pll~~ll~~~~~v~~ 284 (671)
T 2zpa_A 240 -----------------------------------KFRFIAPDALLASDEQADWLVVDEAAAIPAPLLHQLVSRFPRTLL 284 (671)
T ss_dssp -----------------------------------GCCBCCHHHHHHSCCCCSEEEEETGGGSCHHHHHHHHTTSSEEEE
T ss_pred -----------------------------------CeEEeCchhhhhCcccCCEEEEEchhcCCHHHHHHHHhhCCeEEE
Confidence 2789999986 45678999999999999999999999999 7999
Q ss_pred EeeccCCcccCCchhHHHHHHhhhcCCCCCCCcCCCccCCceeEEEeccccccCCCCchHHHHHHhcCCCCCCCCCCCCC
Q 003262 211 SSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLCLDVMNSIPHINR 290 (835)
Q Consensus 211 sSTi~GYEGTGR~fsLKl~~~L~~~~~~~~~~~~~~~~~r~~~ei~L~ePIRya~gDPvE~WLn~lLcLDa~~~~~~~~~ 290 (835)
||||||||||||||+|||+++|+ .|++++|+|||||++|||||+|||++||||+++++ +
T Consensus 285 ~tTv~GYEGtGrgf~lk~~~~L~-----------------~~~~~~L~~piR~a~~DplE~wl~~~llld~~~~~----~ 343 (671)
T 2zpa_A 285 TTTVQGYEGTGRGFLLKFCARFP-----------------HLHRFELQQPIRWAQGCPLEKMVSEALVFDDENFT----H 343 (671)
T ss_dssp EEEBSSTTBBCHHHHHHHHHTST-----------------TCEEEECCSCSSSCTTCHHHHHHHHHHTCCCGGGG----S
T ss_pred EecCCcCCCcCcccccccHhhcC-----------------CCcEEEccCceecCCCCCHHHHHHHhhCcCCCCCC----C
Confidence 99999999999999999999992 38899999999999999999999999999998642 4
Q ss_pred CCCCCCcceEeeCcccccccCcCcHHHHHHHHHHHHhcccCCChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEE
Q 003262 291 LPPPSECDLYYVNRDTLFSYHKESELFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQ 370 (835)
Q Consensus 291 ~p~p~~c~l~~Vnrd~Lfs~h~~sE~fLq~~~aLlV~AHYkNsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viq 370 (835)
+| |+.|++++||||+||+ +|.+|+++|+|||+|||||+||||++|+|+|+|++||+.. + ++|+|+++
T Consensus 344 ~~-~~~~~~~~~~~~~l~~----~e~~L~~~~~Ll~~aHYr~sp~dL~~llD~p~~~l~va~~-----~---g~IVG~i~ 410 (671)
T 2zpa_A 344 TP-QGNIVISAFEQTLWQS----DPETPLKVYQLLSGAHYRTSPLDLRRMMDAPGQHFLQAAG-----E---NEIAGALW 410 (671)
T ss_dssp CC-CSCCEEEEEETTHHHH----CTHHHHHHHHHHHHHSSSBCHHHHHHHHHCTTEEEEEEEC-----S---SSEEEEEE
T ss_pred CC-CCcceEEEEcHHHhhc----CHHHHHHHHHHHHhcccCCCHHHHHHHhcCCCceEEEEEE-----C---CeEEEEEE
Confidence 55 6999999999999997 6899999999999999999999999999999999999872 1 58999999
Q ss_pred eeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHhccccc
Q 003262 371 VCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTT 450 (835)
Q Consensus 371 ValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~ 450 (835)
++.||+++++.+.+++++++||+||||||++++|+++++|++++++||+||||||+|||+|||+++|+.++++
T Consensus 411 v~~eG~l~~~~~~~~~~g~rRp~G~lip~~l~~~~~~~e~~~~~~~~I~~IAV~P~~rg~GiG~~LL~~~e~~------- 483 (671)
T 2zpa_A 411 LVDEGGLSQQLSQAVWAGFRRPRGNLVAQSLAAHGNNPLAATLRGRRVSRIAVHPARQREGTGRQLIAGALQY------- 483 (671)
T ss_dssp EEEEECCCHHHHHHHHHTSCCCSSCHHHHHHHHHSSCTTGGGSEEEEEEEEEECTTSCSSSHHHHHHHHHHHT-------
T ss_pred EEEcCCcCHHHHHHHHhcccCCCCcchhHHHHHhhcchhhcccCceEEEEEEECHHHcCCCHHHHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred ccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEee
Q 003262 451 FSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVS 530 (835)
Q Consensus 451 ~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylr 530 (835)
..+++|++|+||.|..+++||+|+||.+++++
T Consensus 484 ------------------------------------------------a~~~~~l~v~~~~n~~ai~FYek~GF~~v~ig 515 (671)
T 2zpa_A 484 ------------------------------------------------TQDLDYLSVSFGYTGELWRFWQRCGFVLVRMG 515 (671)
T ss_dssp ------------------------------------------------CCSCSEEEEEEECCHHHHHHHHHTTCEEEEEC
T ss_pred ------------------------------------------------HhcCCEEEEEecCCHHHHHHHHHCCCEEEeee
Confidence 24568999999999999999999999999999
Q ss_pred ecccCCCCCceEEEEccCCcccccccccCccchHHHHHHHHHHHHHhhhhhccCCCCCHHHHHHhcCCcccCCCCCCCCC
Q 003262 531 QNANAVTGEHTCMVLKPLHSEDIEVNESDEWGFFGPFYRDFKQRFFWLLVQHKLQRMDYKLLMSVLDPKINFKELDPRQD 610 (835)
Q Consensus 531 q~~ne~TGEhS~IMlr~L~~~~~~~~~~~~~~wl~~~~~dF~~Rf~~lL~~~~fr~l~~~lal~lL~~~~~~~~~~~~~~ 610 (835)
+.+|..+|||+++|+|||+..+ ..+...+.+.|++++..+. . +.-+...
T Consensus 516 ~~~~~~~Ge~a~iM~k~L~~~g--------~~l~d~~~~~f~r~~~~l~-~-----------~~~~~~~----------- 564 (671)
T 2zpa_A 516 NHREASSGCYTAMALLPMSDAG--------KQLAEREHYRLRRDAQALA-Q-----------WNGETLP----------- 564 (671)
T ss_dssp SSCCTTTCCCEEEEEEECSHHH--------HHHHHHHHHHHHHHHHHHH-H-----------HHTSCCS-----------
T ss_pred eccccCCCceeeeeeeehhhhH--------HHHHHHHHHHHHHhhhhhh-h-----------ccccccc-----------
Confidence 9999999999999999999766 6688889999998874332 1 1111100
Q ss_pred CCcccccccCCCCCHHHHHHHHHHhcCCcchhhhhchHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCCHHHHHHHhC
Q 003262 611 NSDKFLKSLTGVFSANDILRLKDYTNGLIEHYAILDLVPRLAHLYFQEKLPVTLSYVQAAVLLYIGMLGQDISCIQEQMK 690 (835)
Q Consensus 611 ~~~l~~~~~~~~ls~~Dl~rL~~ya~~~~dy~~i~Dllp~La~lyf~~~l~~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~ 690 (835)
+.. ..+..+++.|+++|..|+.+...|+.+. |.|.+++....+ +..+|+++++|+++|++++++++
T Consensus 565 ---~~~-~~~~~l~~~d~~~L~~fa~g~r~~e~~~---~al~rl~~~~~~-------~~~~L~~~~~Q~~~~~~~~~~l~ 630 (671)
T 2zpa_A 565 ---VDP-LNDAVLSDDDWLELAGFAFAHRPLLTSL---GCLLRLLQTSEL-------ALPALRGRLQKNASDAQLCTTLK 630 (671)
T ss_dssp ---SCC-CCCCCCCHHHHHHHHHHHHSCCCTTTTH---HHHHHHHHHCCS-------CCHHHHHHHHSCCCHHHHHHHTT
T ss_pred ---ccc-cCccCCCHHHHHHHHHHHcCCcCHHHHH---HHHHHHHHhccc-------hHHHHHHHHHcCCCHHHHHHHhC
Confidence 000 0023588999999999999999999888 666666654432 34789999999999999999999
Q ss_pred CCH-HHHHHHHHHHHHHHHHHH
Q 003262 691 LEA-DRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 691 l~~-~Q~lalf~k~i~kl~~~~ 711 (835)
++| ++++..+|++++.++..+
T Consensus 631 ~~g~k~~~~~lR~~~~~~l~~~ 652 (671)
T 2zpa_A 631 LSGRKMLLVRQREEAAQALFAL 652 (671)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHHHhh
Confidence 998 799999999998888665
No 2
>1ghe_A Acetyltransferase; acyl coenzyme A complex; HET: ACO; 1.55A {Pseudomonas syringae PV} SCOP: d.108.1.1 PDB: 1j4j_A*
Probab=98.79 E-value=1.7e-07 Score=86.43 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=59.8
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccc
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVH 493 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~ 493 (835)
..+.|..++|+|+|||+|||+++++.+.+++....
T Consensus 89 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g--------------------------------------------- 123 (177)
T 1ghe_A 89 NRAEVQKLMVLPSARGRGLGRQLMDEVEQVAVKHK--------------------------------------------- 123 (177)
T ss_dssp TEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTT---------------------------------------------
T ss_pred ceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcC---------------------------------------------
Confidence 35789999999999999999999999998874211
Q ss_pred ccccCCCCcc--eEEEecCCCHHHHHHHHHCCCeEEEeeecccC-CCCC--ceEEEEccCCc
Q 003262 494 LRERQPEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANA-VTGE--HTCMVLKPLHS 550 (835)
Q Consensus 494 l~e~~~~~lD--ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne-~TGE--hS~IMlr~L~~ 550 (835)
+. ++.|.=+ + ...+||+|+||.++........ ..|. ..++|.|.|.+
T Consensus 124 --------~~~i~l~~~~~-n-~a~~~y~k~Gf~~~~~~~~~~~~~~g~~~~~~~m~k~l~~ 175 (177)
T 1ghe_A 124 --------RGLLHLDTEAG-S-VAEAFYSALAYTRVGELPGYCATPDGRLHPTAIYFKTLGQ 175 (177)
T ss_dssp --------CCEEEEEEETT-S-HHHHHHHHTTCEEEEEEEEEEECTTSCEEEEEEEEEEC--
T ss_pred --------CCEEEEEeccC-C-HHHHHHHHcCCEEcccccceeecCCCcccceEEEEEEcCC
Confidence 11 2222212 4 4999999999999988766543 4564 67899998864
No 3
>3dr6_A YNCA; acetyltransferase, csgid target, essential gene, IDP00086, structural genomics, center for STRU genomics of infectious diseases; HET: MSE; 1.75A {Salmonella typhimurium} SCOP: d.108.1.1 PDB: 3dr8_A*
Probab=98.72 E-value=1.4e-07 Score=86.30 Aligned_cols=86 Identities=12% Similarity=0.056 Sum_probs=65.2
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccc
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVH 493 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~ 493 (835)
..+.|..|+|+|+|||+|||+++++.+.+++.....
T Consensus 81 ~~~~~~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~-------------------------------------------- 116 (174)
T 3dr6_A 81 RYTVEHSVYVHPAHQGKGLGRKLLSRLIDEARRCGK-------------------------------------------- 116 (174)
T ss_dssp TTEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTC--------------------------------------------
T ss_pred ceEEEEEEEECHHHccCCHHHHHHHHHHHHHHHcCC--------------------------------------------
Confidence 346789999999999999999999999998742110
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCC--CceEEEEccCCcc
Q 003262 494 LRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTG--EHTCMVLKPLHSE 551 (835)
Q Consensus 494 l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TG--EhS~IMlr~L~~~ 551 (835)
..=++.|. .-+....+||+|+||.++..........| ...++|.+.|+..
T Consensus 117 -------~~i~~~~~-~~n~~a~~~y~k~Gf~~~~~~~~~~~~~g~~~~~~~m~~~l~~~ 168 (174)
T 3dr6_A 117 -------HVMVAGIE-SQNAASIRLHHSLGFTVTAQMPQVGVKFGRWLDLTFMQLQLDEH 168 (174)
T ss_dssp -------SEEEEEEE-TTCHHHHHHHHHTTCEEEEEEEEEEEETTEEEEEEEEEEECCCC
T ss_pred -------CEEEEEee-cCCHHHHHHHHhCCCEEEEEccceEEECCeeEEEEEEEeeccCc
Confidence 00022232 23788999999999999999887655567 5688999999754
No 4
>4e0a_A BH1408 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG, transferase; 1.80A {Bacillus halodurans} PDB: 4f6a_A*
Probab=98.70 E-value=1.2e-07 Score=86.31 Aligned_cols=120 Identities=10% Similarity=0.108 Sum_probs=83.7
Q ss_pred CCChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCC
Q 003262 331 KNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVF 410 (835)
Q Consensus 331 kNsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f 410 (835)
.-+..+++.+.+.+...+||+.. ++ .+++|++.+.....-.. ...
T Consensus 39 ~~~~~~~~~~~~~~~~~~~v~~~-----~~--g~~vG~~~~~~~~~~~~----------------------------~~~ 83 (164)
T 4e0a_A 39 TLNPSRFQAAVQGEKSTVLVFVD-----ER--EKIGAYSVIHLVQTPLL----------------------------PTM 83 (164)
T ss_dssp SSCHHHHHHHHHCSSEEEEEEEE-----ET--TEEEEEEEEEEEEECCC----------------------------SSB
T ss_pred HHHHHHHHHHhcCCceEEEEEEC-----CC--CcEEEEEEEEecCCCCC----------------------------ccc
Confidence 44667788788888888888762 11 26899888875432110 012
Q ss_pred CCCcccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcc
Q 003262 411 PSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPL 490 (835)
Q Consensus 411 ~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppL 490 (835)
..-..+.|..|+|+|+|||+|||+++++.+.+++...
T Consensus 84 ~~~~~~~i~~~~V~p~~rg~Gig~~ll~~~~~~~~~~------------------------------------------- 120 (164)
T 4e0a_A 84 QQRKTVYISDLCVDETRRGGGIGRLIFEAIISYGKAH------------------------------------------- 120 (164)
T ss_dssp CCEEEEEEEEEEECGGGCSSSHHHHHHHHHHHHHHHT-------------------------------------------
T ss_pred cCCcEEEEEEEEECHHHhcCChHHHHHHHHHHHHHHc-------------------------------------------
Confidence 3345688999999999999999999999999887421
Q ss_pred cccccccCCCCcc--eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCC
Q 003262 491 LVHLRERQPEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGE 539 (835)
Q Consensus 491 l~~l~e~~~~~lD--ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGE 539 (835)
+++ ++.| +--+....+||+|+||.++......+..++.
T Consensus 121 ----------g~~~i~l~~-~~~n~~a~~~y~k~GF~~~~~~~~~~~~~~~ 160 (164)
T 4e0a_A 121 ----------QVDAIELDV-YDFNDRAKAFYHSLGMRCQKQTMELPLLEHH 160 (164)
T ss_dssp ----------TCSEEEEEE-ETTCHHHHHHHHHTTCEEEEEEEEEECC---
T ss_pred ----------CCCEEEEEE-EcCCHHHHHHHHHcCCEEeceeccCCccccc
Confidence 111 1222 2347889999999999999998888765554
No 5
>3efa_A Putative acetyltransferase; structural genom 2, protein structure initiative, midwest center for structu genomics, MCSG; 2.42A {Lactobacillus plantarum WCFS1}
Probab=98.70 E-value=2.9e-07 Score=84.25 Aligned_cols=134 Identities=14% Similarity=0.050 Sum_probs=88.3
Q ss_pred CcHHHHHHHHHHHHhccc--CCChhH-HHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcC
Q 003262 313 ESELFLQRMMALYVSSHY--KNSPND-LQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEG 389 (835)
Q Consensus 313 ~sE~fLq~~~aLlV~AHY--kNsPnD-LqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G 389 (835)
+++.-+.+++.|...+.- .+.|.+ ...-.|.+..+++++.. .+ .+++|.+.+...+
T Consensus 10 ~~~~d~~~i~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~ivG~~~~~~~~-------------- 68 (147)
T 3efa_A 10 ASPANRAAAYALRQAVFVEERGISADVEFDVKDTDQCEYAVLYL----QP---DLPITTLRLEPQA-------------- 68 (147)
T ss_dssp CCHHHHHHHHHHHHHHTTTTTCCCHHHHSCTTCSTTCCEEEEEE----ET---TEEEEEEEEEECS--------------
T ss_pred CCHhHHHHHHHHHHHHhhhccCCCcHHHHhccCCCCcEEEEEEc----CC---CeEEEEEEEEeCC--------------
Confidence 455667777777666543 444543 22334555666624431 11 3688888775421
Q ss_pred CCCCCCchhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhh
Q 003262 390 HQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTE 469 (835)
Q Consensus 390 ~Rp~GdLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~ 469 (835)
-..+.|.+++|||+|||+|||+++++.+.++......
T Consensus 69 -----------------------~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~~~~~g~-------------------- 105 (147)
T 3efa_A 69 -----------------------DHVMRFGRVCTRKAYRGHGWGRQLLTAAEEWATQRGF-------------------- 105 (147)
T ss_dssp -----------------------TTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTC--------------------
T ss_pred -----------------------CCeEEEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCC--------------------
Confidence 1347899999999999999999999999887642110
Q ss_pred HHhhhhcccccccCCCCCCcccccccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccC
Q 003262 470 AAKKVSLLEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPL 548 (835)
Q Consensus 470 ~~~~~~l~~e~i~~r~~~ppLl~~l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L 548 (835)
..=++.+ +....+||+|+||.++.-. ....|....+|.|.|
T Consensus 106 -------------------------------~~i~l~~----~~~a~~~y~~~Gf~~~~~~---~~~~g~~~~~m~k~l 146 (147)
T 3efa_A 106 -------------------------------THGEIHG----ELTAQRFYELCGYRVTAGP---YDEDGAPVVIMHKQL 146 (147)
T ss_dssp -------------------------------CEEEEEE----EGGGHHHHHHTTCEEEECC---CCBTTBCEEEEEEEC
T ss_pred -------------------------------CEEEEec----cHHHHHHHHHcCCcccCCc---ccCCCcceEEeeecc
Confidence 0012333 5889999999999998732 334688888898875
No 6
>1q2y_A Protein YJCF, similar to hypothetical proteins; GCN5-related N-acetyltransferase superfamily fold, NYSGXRC, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: d.108.1.1
Probab=98.70 E-value=8.3e-08 Score=87.63 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=57.9
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccc
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVH 493 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~ 493 (835)
..+.|.+++|+|+|||+|||+++++.+.+++.....
T Consensus 64 ~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~~g~-------------------------------------------- 99 (140)
T 1q2y_A 64 GYGKLERICVLKSHRSAGVGGIIMKALEKAAADGGA-------------------------------------------- 99 (140)
T ss_dssp TEEEEEEEECCGGGTTTTHHHHHHHHHHHHHHHTTC--------------------------------------------
T ss_pred CcEEEEEEEEcHHHhccCHHHHHHHHHHHHHHHCCC--------------------------------------------
Confidence 457899999999999999999999999887642110
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEcc
Q 003262 494 LRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKP 547 (835)
Q Consensus 494 l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~ 547 (835)
..=++.+ +....+||+|+||.++.-+ ... ..|...++|.|+
T Consensus 100 -------~~i~l~~----n~~~~~~y~~~Gf~~~~~~-~~~-~~g~~~~~m~k~ 140 (140)
T 1q2y_A 100 -------SGFILNA----QTQAVPFYKKHGYRVLSEK-EFL-DAGIPHLQMMKD 140 (140)
T ss_dssp -------CSEEEEE----EGGGHHHHHHTTCEESCSC-CEE-SSSSEEEEEEEC
T ss_pred -------cEEEEEe----cHHHHHHHHHCCCEEeccc-ccc-cCCccceeEecC
Confidence 0012223 5799999999999998774 333 468888999874
No 7
>1z4r_A General control of amino acid synthesis protein 5-like 2; GCN5, acetyltransferase, SGC, structural genomics, structural genomics consortium; HET: ACO; 1.74A {Homo sapiens} SCOP: d.108.1.1 PDB: 1cm0_B*
Probab=98.68 E-value=3.5e-07 Score=85.60 Aligned_cols=139 Identities=14% Similarity=0.160 Sum_probs=93.4
Q ss_pred CcHHHHHHHHHH---HHhcccCCChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcC
Q 003262 313 ESELFLQRMMAL---YVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEG 389 (835)
Q Consensus 313 ~sE~fLq~~~aL---lV~AHYkNsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G 389 (835)
+++.-+..+..| |...--..+...++.+...|.+..|++.. + .+++|.+.+....
T Consensus 18 ~~~~d~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~vG~~~~~~~~-------------- 75 (168)
T 1z4r_A 18 ANRRVLLWLVGLQNVFSHQLPRMPKEYIARLVFDPKHKTLALIK-----D---GRVIGGICFRMFP-------------- 75 (168)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHTCTTCEEEEEEE-----T---TEEEEEEEEEEET--------------
T ss_pred CchhHHHHHHHHHHhccCcCccccHHHHHHHHhCCCcEEEEEEE-----C---CEEEEEEEEEEec--------------
Confidence 455566666666 33221134446677777778888888862 1 3688887665321
Q ss_pred CCCCCCchhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhh
Q 003262 390 HQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTE 469 (835)
Q Consensus 390 ~Rp~GdLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~ 469 (835)
.-..+.|..|+|+|+|||+|||+++++.+.++....
T Consensus 76 ----------------------~~~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~~---------------------- 111 (168)
T 1z4r_A 76 ----------------------TQGFTEIVFCAVTSNEQVKGYGTHLMNHLKEYHIKH---------------------- 111 (168)
T ss_dssp ----------------------TTTEEEEEEEEECGGGCSSSHHHHHHHHHHHHHHHT----------------------
T ss_pred ----------------------CCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHc----------------------
Confidence 013467889999999999999999999999876421
Q ss_pred HHhhhhcccccccCCCCCCcccccccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecc----cCCCCCceEEEE
Q 003262 470 AAKKVSLLEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNA----NAVTGEHTCMVL 545 (835)
Q Consensus 470 ~~~~~~l~~e~i~~r~~~ppLl~~l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~----ne~TGEhS~IMl 545 (835)
++..+.+ +. +....+||+|+||.++...... +...+.+.++|-
T Consensus 112 -------------------------------g~~~~~~-~~-~~~a~~~y~k~GF~~~~~~~~~~~~~y~g~~~d~~~m~ 158 (168)
T 1z4r_A 112 -------------------------------NILYFLT-YA-DEYAIGYFKKQGFSKDIKVPKSRYLGYIKDYEGATLME 158 (168)
T ss_dssp -------------------------------TCCEEEE-EE-CGGGHHHHHHTTEESCCCSCHHHHTTTSCCCTTCEEEE
T ss_pred -------------------------------CCcEEEE-eC-ChHHHHHHHHCCCcEeeccccchhhhhhhhcCCceEEE
Confidence 1112211 22 4788999999999998655431 113568999999
Q ss_pred ccCCc
Q 003262 546 KPLHS 550 (835)
Q Consensus 546 r~L~~ 550 (835)
+.|++
T Consensus 159 ~~l~~ 163 (168)
T 1z4r_A 159 CELNP 163 (168)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 99875
No 8
>1y9w_A Acetyltransferase; structural genomics, Pro structure initiative, PSI, midwest center for structural GE MCSG; 1.90A {Bacillus cereus} SCOP: d.108.1.1
Probab=98.66 E-value=2e-07 Score=84.85 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=58.8
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccc
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHL 494 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l 494 (835)
.+.|..|+|+|+|||+|||+++++.+.+++...
T Consensus 63 ~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~~----------------------------------------------- 95 (140)
T 1y9w_A 63 HLHIDFLWVDESVRHDGYGSQLLHEIEGIAKEK----------------------------------------------- 95 (140)
T ss_dssp EEEEEEEEECGGGTTTTHHHHHHHHHHHHHHHT-----------------------------------------------
T ss_pred EEEEEEEEEcHHHcCCCHHHHHHHHHHHHHHHc-----------------------------------------------
Confidence 378999999999999999999999998876421
Q ss_pred cccCCCCcc--eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccC
Q 003262 495 RERQPEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPL 548 (835)
Q Consensus 495 ~e~~~~~lD--ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L 548 (835)
++. ++.+. +....+||+|+||.++.....+.. .| ..++|.|+|
T Consensus 96 ------g~~~i~~~~~---n~~a~~~y~~~Gf~~~~~~~~~~~-~~-~~~~m~k~l 140 (140)
T 1y9w_A 96 ------GCRLILLDSF---SFQAPEFYKKHGYREYGVVEDHPK-GH-SQHFFEKRL 140 (140)
T ss_dssp ------TCCEEEEEEE---GGGCHHHHHHTTCEEEEEESSCST-TC-CEEEEEEEC
T ss_pred ------CCCEEEEEcC---CHhHHHHHHHCCCEEEEEEcCccC-Cc-eeEEEEecC
Confidence 111 22231 677999999999999988776543 34 889998875
No 9
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.66 E-value=3.6e-07 Score=102.27 Aligned_cols=181 Identities=20% Similarity=0.201 Sum_probs=118.0
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccc
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 135 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lg 135 (835)
..|.+|.+|+..+++.+..+. ..++|+|+.|.|||+++...++.+...|+.+|+++||+..+++.+-+.+... +.
T Consensus 25 ~Ln~~Q~~av~~~~~~i~~~~--~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~--~~- 99 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIKEKK--HHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKE--AS- 99 (459)
T ss_dssp CCCHHHHHHHHHHHHHHHSSS--CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSC--EE-
T ss_pred cCCHHHHHHHHHHHHHHhcCC--CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccc--hh-
Confidence 468899999999998887653 4899999999999999999989999888888999999999999887765211 10
Q ss_pred ccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhhc----CCeEEEE
Q 003262 136 YKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG----PYLVFLS 211 (835)
Q Consensus 136 y~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~----~y~vfls 211 (835)
.-|.-+.+... .......|.. .+...+...+++|||||..++..++..|+. ...+++.
T Consensus 100 -T~h~~~~~~~~----------------~~~~~~~~~~-~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~~~v 161 (459)
T 3upu_A 100 -TIHSILKINPV----------------TYEENVLFEQ-KEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPWCTIIGI 161 (459)
T ss_dssp -EHHHHHTEEEE----------------ECSSCEEEEE-CSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCTTCEEEEE
T ss_pred -hHHHHhccCcc----------------cccccchhcc-cccccccCCCEEEEECchhCCHHHHHHHHHhccCCCEEEEE
Confidence 00100000000 0000111211 112234568999999999999988877773 2245555
Q ss_pred eeccC--CcccCCchhHHHHHHhhhcCCCCCCCcCCCccCCceeEEEeccccccCCCCchHHHHHHhc
Q 003262 212 STVNG--YEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLL 277 (835)
Q Consensus 212 STi~G--YEGTGR~fsLKl~~~L~~~~~~~~~~~~~~~~~r~~~ei~L~ePIRya~gDPvE~WLn~lL 277 (835)
.-.+= |-+.|..+ ..+..+-. ...+..++|++-.|. +.++-.+.|.+.
T Consensus 162 GD~~Ql~~v~~g~~~--~~l~~~~~--------------~~~~~~~~L~~~~R~--~~~I~~~a~~lr 211 (459)
T 3upu_A 162 GDNKQIRPVDPGENT--AYISPFFT--------------HKDFYQCELTEVKRS--NAPIIDVATDVR 211 (459)
T ss_dssp ECTTSCCCCCTTSCS--CCCCGGGT--------------CTTEEEEECCCCCCC--CCHHHHHHHHHH
T ss_pred CCHHHcCCccCCcch--HhHHHHHh--------------cCCCcEEeceeeeeC--CcHHHHHHHHHH
Confidence 54333 33333311 00111111 135789999999998 678888888874
No 10
>2r7h_A Putative D-alanine N-acetyltransferase of GNAT FA; putative acetyltransferase of the GNAT family; 1.85A {Desulfovibrio desulfuricans subsp}
Probab=98.66 E-value=4.8e-07 Score=84.14 Aligned_cols=83 Identities=14% Similarity=0.128 Sum_probs=62.6
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccc
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVH 493 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~ 493 (835)
..+.|..++|||+|||+|||+++++.+.+++.....
T Consensus 93 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~-------------------------------------------- 128 (177)
T 2r7h_A 93 GTYDLYWIAVAPHRQHSGLGRALLAEVVHDVRLTGG-------------------------------------------- 128 (177)
T ss_dssp SEEEEEEEEECTTTTTTTHHHHHHHHHHHHHHHTTC--------------------------------------------
T ss_pred CeEEEEEEEECHHHhCCCHHHHHHHHHHHHHHhcCC--------------------------------------------
Confidence 346888999999999999999999999988742110
Q ss_pred ccccCCCCcceEEEe-cCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccC
Q 003262 494 LRERQPEKLNYIGVS-FGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPL 548 (835)
Q Consensus 494 l~e~~~~~lDylGvS-FGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L 548 (835)
..=++.|+ .--+....+||+|+||.++.....+.. .|++.++|.|.|
T Consensus 129 -------~~i~l~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~-~g~~~~~~~~~l 176 (177)
T 2r7h_A 129 -------RLLFAETSGIRKYAPTRRFYERAGFSAEAVLKAFYR-AGDDKIIYRLEV 176 (177)
T ss_dssp -------CEEEEEEECSGGGHHHHHHHHHTTCEEEEEEEEEEE-TTEEEEEEEEEC
T ss_pred -------CEEEEEeccccccHHHHHHHHHcCCEeccccHhHHh-CCCcEEEEEEec
Confidence 00022222 223678999999999999998877654 588999999876
No 11
>1tiq_A Protease synthase and sporulation negative regulatory protein PAI 1; alpha-beta protein, structural genomics, PSI; HET: COA; 1.90A {Bacillus subtilis} SCOP: d.108.1.1
Probab=98.65 E-value=3.9e-07 Score=87.25 Aligned_cols=127 Identities=14% Similarity=0.140 Sum_probs=84.2
Q ss_pred hhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCCCCC
Q 003262 334 PNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSL 413 (835)
Q Consensus 334 PnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~l 413 (835)
+.+++..++.|...+||+.. + .+++|.+.+........ ...-
T Consensus 47 ~~~~~~~l~~~~~~~~va~~-----~---~~ivG~~~~~~~~~~~~------------------------------~~~~ 88 (180)
T 1tiq_A 47 TEQLEKELSNMSSQFFFIYF-----D---HEIAGYVKVNIDDAQSE------------------------------EMGA 88 (180)
T ss_dssp HHHHHHHHHCTTEEEEEEEE-----T---TEEEEEEEEEEGGGSSS------------------------------CCCT
T ss_pred HHHHHHHHcCCCceEEEEEE-----C---CEEEEEEEEEeCCCccc------------------------------ccCC
Confidence 44555555678888888752 1 36888887764321100 0011
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccc
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVH 493 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~ 493 (835)
..+.|.+|+|+|+|||+|||+++|+.+.++......
T Consensus 89 ~~~~i~~l~V~p~~rg~GiG~~Ll~~~~~~a~~~g~-------------------------------------------- 124 (180)
T 1tiq_A 89 ESLEIERIYIKNSFQKHGLGKHLLNKAIEIALERNK-------------------------------------------- 124 (180)
T ss_dssp TEEEEEEEEECGGGCSSSHHHHHHHHHHHHHHHTTC--------------------------------------------
T ss_pred CcEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCC--------------------------------------------
Confidence 357899999999999999999999999987642110
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCCc
Q 003262 494 LRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHS 550 (835)
Q Consensus 494 l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~~ 550 (835)
.. =++.| +--+....+||+|+||.++..+..+..-...+.++|.+.+..
T Consensus 125 ------~~-i~L~v-~~~N~~A~~fY~k~GF~~~g~~~~~~~~~~~~~~~m~~~l~~ 173 (180)
T 1tiq_A 125 ------KN-IWLGV-WEKNENAIAFYKKMGFVQTGAHSFYMGDEEQTDLIMAKTLIL 173 (180)
T ss_dssp ------SE-EEEEE-ETTCHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEECCC
T ss_pred ------CE-EEEEe-hhcCHHHHHHHHHcCCEEcCcEEEeeCCcccccEEEEEeccc
Confidence 00 12333 233789999999999999988774333223567888887764
No 12
>3lod_A Putative acyl-COA N-acyltransferase; structural genomics, PSI2, MCSG, structure initiative; 2.50A {Klebsiella pneumoniae subsp}
Probab=98.64 E-value=9.5e-07 Score=80.90 Aligned_cols=82 Identities=9% Similarity=0.062 Sum_probs=61.7
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccc
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVH 493 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~ 493 (835)
..+.|..++|+|+|||+|||+++++.+.+++....
T Consensus 73 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g--------------------------------------------- 107 (162)
T 3lod_A 73 GFGEMKRVYIDPQHRGQQLGEKLLAALEAKARQRD--------------------------------------------- 107 (162)
T ss_dssp SEEEEEEEEECTTSCSSSHHHHHHHHHHHHHHTTT---------------------------------------------
T ss_pred CeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCC---------------------------------------------
Confidence 45789999999999999999999999998875321
Q ss_pred ccccCCCCcc--eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCCcc
Q 003262 494 LRERQPEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHSE 551 (835)
Q Consensus 494 l~e~~~~~lD--ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~~~ 551 (835)
+. ++.| +.-+....+||+|+||.++.....+.. |...++|.|+|...
T Consensus 108 --------~~~i~l~~-~~~n~~a~~~y~~~GF~~~~~~~~~~~--~~~~~~m~k~l~~~ 156 (162)
T 3lod_A 108 --------CHTLRLET-GIHQHAAIALYTRNGYQTRCAFAPYQP--DPLSVFMEKPLFAD 156 (162)
T ss_dssp --------CCEEEEEE-ETTCHHHHHHHHHTTCEEECCCTTCCC--CSSEEEEEEECC--
T ss_pred --------CcEEEEEe-cCCCHHHHHHHHHcCCEEcccccccCC--CCccEEEEEecCCC
Confidence 11 1222 233788999999999999987665543 45589999999754
No 13
>1cjw_A Protein (serotonin N-acetyltransferase); HET: COT; 1.80A {Ovis aries} SCOP: d.108.1.1 PDB: 1b6b_A
Probab=98.63 E-value=3.3e-07 Score=83.41 Aligned_cols=130 Identities=15% Similarity=0.067 Sum_probs=85.3
Q ss_pred CCChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecC--CCCHHHHHHHHhcCCCCCCCchhHHHHHhhccC
Q 003262 331 KNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEG--QISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDA 408 (835)
Q Consensus 331 kNsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG--~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~ 408 (835)
..++.+++...+.+....|++.. + .+++|.+.+.... .+.... . ..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~v~~~-----~---~~ivG~~~~~~~~~~~~~~~~-------------------~-----~~ 82 (166)
T 1cjw_A 35 PLNLDEVQHFLTLCPELSLGWFV-----E---GRLVAFIIGSLWDEERLTQES-------------------L-----AL 82 (166)
T ss_dssp SCCHHHHHHHHHHCGGGEEEEEE-----T---TEEEEEEEEEEECSSSCCGGG-------------------G-----GC
T ss_pred ccCHHHHHHHHhcCCCcEEEEEE-----C---CeEEEEEEeeeeccccccccc-------------------c-----cc
Confidence 56788887665555556666641 1 3688887766432 122110 0 01
Q ss_pred CCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCC
Q 003262 409 VFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLP 488 (835)
Q Consensus 409 ~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~p 488 (835)
....-..+.|..|+|+|+|||+|||+++++.+.+++..+
T Consensus 83 ~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~----------------------------------------- 121 (166)
T 1cjw_A 83 HRPRGHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQ----------------------------------------- 121 (166)
T ss_dssp CCTTCCEEEEEEEEECTTSTTSSHHHHHHHHHHHHHHTS-----------------------------------------
T ss_pred ccCCCCceEEEEEEECHhhccCChHHHHHHHHHHHHHHh-----------------------------------------
Confidence 122345688999999999999999999999999887421
Q ss_pred cccccccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccC
Q 003262 489 PLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPL 548 (835)
Q Consensus 489 pLl~~l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L 548 (835)
.++..+-+ ..+....+||+|+||.++..... ...|..-..|.++|
T Consensus 122 -----------~g~~~i~l--~~n~~a~~~y~k~GF~~~~~~~~--~~~g~~~~~m~~~l 166 (166)
T 1cjw_A 122 -----------PAVRRAVL--MCEDALVPFYQRFGFHPAGPCAI--VVGSLTFTEMHCSL 166 (166)
T ss_dssp -----------TTCCEEEE--EECGGGHHHHHTTTEEEEEECSC--CBTTBCCEEEEEEC
T ss_pred -----------cCcceEEE--ecCchHHHHHHHcCCeECCccce--ecCCcchhhhcccC
Confidence 01122222 12678999999999999985333 34688888888765
No 14
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.63 E-value=9.6e-07 Score=102.75 Aligned_cols=199 Identities=19% Similarity=0.235 Sum_probs=116.6
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--C-CCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 58 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--G-YSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 58 T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g-~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
+..|..|+..++. ++.++|||+.|.|||+++.-.++.+... + ..+|+++||+.++++.|-+-+......+
T Consensus 151 ~~~Q~~Ai~~~l~-------~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l 223 (608)
T 1w36_D 151 INWQKVAAAVALT-------RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL 223 (608)
T ss_dssp CCHHHHHHHHHHT-------BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHhc-------CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcC
Confidence 6779998865532 4689999999999999998777776643 2 2489999999999999988776555445
Q ss_pred cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhhcC----CeEEE
Q 003262 135 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLGP----YLVFL 210 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~~----y~vfl 210 (835)
+........+ |.-...+.++-........+.|.. .....+|+||||||.++..+++..|+.. -.++|
T Consensus 224 ~l~~~~~~~~-----~~~~~Tih~ll~~~~~~~~~~~~~----~~~l~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~liL 294 (608)
T 1w36_D 224 PLTDEQKKRI-----PEDASTLHRLLGAQPGSQRLRHHA----GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIF 294 (608)
T ss_dssp SCCSCCCCSC-----SCCCBTTTSCC-----------CT----TSCCSCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEE
T ss_pred CCCHHHHhcc-----chhhhhhHhhhccCCCchHHHhcc----CCCCCCCEEEEechhhCCHHHHHHHHHhCCCCCEEEE
Confidence 4332211100 101112222111111111111111 1112689999999999999999988852 24445
Q ss_pred Eeecc--CCcccC-----------CchhHHHHHHhhhcCCCCCCCcCCCccCCce-----eEEEeccccccCCCCchHHH
Q 003262 211 SSTVN--GYEGTG-----------RSLSLKLLHQLEQQSHMPAKGVEGSAHGCLF-----KKIELSESIRYAPGDPIESW 272 (835)
Q Consensus 211 sSTi~--GYEGTG-----------R~fsLKl~~~L~~~~~~~~~~~~~~~~~r~~-----~ei~L~ePIRya~gDPvE~W 272 (835)
..-.+ .+=|.| .|++-.++++|.+....... ......| ..+.|++..|...+.++-.+
T Consensus 295 vGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~L~~~~R~~~~s~I~~l 370 (608)
T 1w36_D 295 LGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVP----AGTGTEAASLRDSLCLLQKSYRFGSDSGIGQL 370 (608)
T ss_dssp EECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHHHHSSSCCC----CCSTTTTHHHHTTEEECCCCCCSSCCTTHHHH
T ss_pred EcchhhcCCCCCCcHHHHHHHHHhccccHHHHHHHHHhcCcccc----cccccccccccccEEecceeeeeCCcchHHHH
Confidence 43221 222333 34555666777665421000 0000112 26999999999988888877
Q ss_pred HHHh
Q 003262 273 LNGL 276 (835)
Q Consensus 273 Ln~l 276 (835)
-+.+
T Consensus 371 a~~i 374 (608)
T 1w36_D 371 AAAI 374 (608)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 15
>3kkw_A Putative uncharacterized protein; acetyltransferase, GNAT family, structural genomics, PSI, protein structure initiative; 1.41A {Pseudomonas aeruginosa PAO1}
Probab=98.62 E-value=1.8e-07 Score=89.36 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=87.5
Q ss_pred cccCCChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhcc
Q 003262 328 SHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRD 407 (835)
Q Consensus 328 AHYkNsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d 407 (835)
..|.-++.+++...+.+. .+||+.. + .+++|.+.+...
T Consensus 55 ~~~~~~~~~~~~~~~~~~-~~~v~~~-----~---g~ivG~~~~~~~--------------------------------- 92 (182)
T 3kkw_A 55 AIWPFSVAQLAAAIAERR-GSTVAVH-----D---GQVLGFANFYQW--------------------------------- 92 (182)
T ss_dssp CCSSCCHHHHHHHHHHSE-EEEEEEE-----T---TEEEEEEEEEEE---------------------------------
T ss_pred cCCCCCHHHHHHHhcCCc-cEEEEEe-----C---CeEEEEEEEEee---------------------------------
Confidence 356678888987776554 4566541 1 368888876511
Q ss_pred CCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCC
Q 003262 408 AVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNL 487 (835)
Q Consensus 408 ~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ 487 (835)
..-..+.|..|+|+|+|||+|||+++++.+.+++..+..
T Consensus 93 ---~~~~~~~i~~l~V~p~~rg~Gig~~Ll~~~~~~a~~~~~-------------------------------------- 131 (182)
T 3kkw_A 93 ---QHGDFCALGNMMVAPAARGLGVARYLIGVMENLAREQYK-------------------------------------- 131 (182)
T ss_dssp ---ETTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHHHC--------------------------------------
T ss_pred ---cCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHhcCC--------------------------------------
Confidence 012357899999999999999999999999988753210
Q ss_pred CcccccccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCc--eEEEEccCC
Q 003262 488 PPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEH--TCMVLKPLH 549 (835)
Q Consensus 488 ppLl~~l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEh--S~IMlr~L~ 549 (835)
..-=++.| +.-+....+||+|+||.++.....++ ..|+. .++|.|+|+
T Consensus 132 ------------~~~i~l~v-~~~N~~a~~~y~k~GF~~~~~~~~~~-~~g~~~~~~~m~k~L~ 181 (182)
T 3kkw_A 132 ------------ARLMKISC-FNANAAGLLLYTQLGYQPRAIAERHD-PDGRRVALIQMDKPLE 181 (182)
T ss_dssp ------------CSEEEEEE-ETTCHHHHHHHHHTTCEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred ------------ccEEEEEE-ecCCHHHHHHHHHCCCeEeccccccc-cCCcEEeEEEEeeccC
Confidence 00002222 23378999999999999999988876 56764 677888775
No 16
>3ld2_A SMU.2055, putative acetyltransferase; HET: COA; 2.50A {Streptococcus mutans}
Probab=98.62 E-value=9.6e-07 Score=84.56 Aligned_cols=124 Identities=17% Similarity=0.136 Sum_probs=85.3
Q ss_pred CChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCCC
Q 003262 332 NSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFP 411 (835)
Q Consensus 332 NsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~ 411 (835)
.+..++.... .+...+|++.. + .+++|++.+..... +.
T Consensus 68 ~~~~~~~~~~-~~~~~~~v~~~-----~---~~~vG~~~~~~~~~---------------------------------~~ 105 (197)
T 3ld2_A 68 ASKDQIIQKF-ESNTHFLVAKI-----K---DKIVGVLDYSSLYP---------------------------------FP 105 (197)
T ss_dssp CCHHHHHHHH-TTTCEEEEEEE-----S---SCEEEEEEEEESCS---------------------------------SG
T ss_pred ccHHHHHHhh-CCCCeEEEEEe-----C---CCEEEEEEEEeccC---------------------------------CC
Confidence 3445555444 36667777652 1 37899887765221 12
Q ss_pred CCcccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccc
Q 003262 412 SLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLL 491 (835)
Q Consensus 412 ~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl 491 (835)
.-..+.+..|+|+|+|||+|||+++++.+.+++... ..
T Consensus 106 ~~~~~~~~~~~V~p~~rg~Gig~~ll~~~~~~a~~~-~~----------------------------------------- 143 (197)
T 3ld2_A 106 SGQHIVTFGIAVAEKERRKGIGRALVQIFLNEVKSD-YQ----------------------------------------- 143 (197)
T ss_dssp GGTTEEEEEEEECGGGTTSSHHHHHHHHHHHHHTTT-CS-----------------------------------------
T ss_pred CCCeEEEEEEEEcHHHcCCCHHHHHHHHHHHHHHHH-HH-----------------------------------------
Confidence 224567889999999999999999999999887422 00
Q ss_pred ccccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCC--ceEEEEccCCc
Q 003262 492 VHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGE--HTCMVLKPLHS 550 (835)
Q Consensus 492 ~~l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGE--hS~IMlr~L~~ 550 (835)
.=++. .+.-+....+||+|+||.++..........|. ..++|.+.++.
T Consensus 144 ----------~i~l~-v~~~N~~a~~~y~k~GF~~~~~~~~~~~~~g~~~~~~~~~~~l~~ 193 (197)
T 3ld2_A 144 ----------KVLIH-VLSSNQEAVLFYKKLGFDLEARLTKQFFLKGQYVDDLIYSYDLEA 193 (197)
T ss_dssp ----------EEEEE-EETTCHHHHHHHHHTTCEEEEEEEEEEEETTEEEEEEEEEEECC-
T ss_pred ----------eEEEE-eeCCCHHHHHHHHHCCCEEeeeccceEEECCeecceeeeeehhcc
Confidence 00122 23447889999999999999987666556786 78889988863
No 17
>2x7b_A N-acetyltransferase SSO0209; HET: COA; 1.95A {Sulfolobus solfataricus}
Probab=98.60 E-value=1.7e-07 Score=88.64 Aligned_cols=80 Identities=21% Similarity=0.293 Sum_probs=61.9
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccc
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHL 494 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l 494 (835)
.+.|.+|+|+|+|||+|||+++++.+.++.....
T Consensus 87 ~~~i~~l~V~p~~rg~GiG~~Ll~~~~~~a~~~~---------------------------------------------- 120 (168)
T 2x7b_A 87 KGHVVSIAVLEEYRRKGIATTLLEASMKSMKNDY---------------------------------------------- 120 (168)
T ss_dssp EEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTT----------------------------------------------
T ss_pred EEEEEEEEECHHHhccCHHHHHHHHHHHHHHHhc----------------------------------------------
Confidence 5689999999999999999999999998875320
Q ss_pred cccCCCCcc--eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccC
Q 003262 495 RERQPEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPL 548 (835)
Q Consensus 495 ~e~~~~~lD--ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L 548 (835)
+++ ++.| +--+....+||+|+||..+.....+.. .|++.++|.++|
T Consensus 121 ------g~~~i~l~v-~~~N~~A~~~Yek~GF~~~~~~~~~~~-~g~~~~~m~~~l 168 (168)
T 2x7b_A 121 ------NAEEIYLEV-RVSNYPAIALYEKLNFKKVKVLKGYYA-DGEDAYLMARPL 168 (168)
T ss_dssp ------CCSEEEEEE-ETTCHHHHHHHHHTTCEEEEEETTCST-TSCCEEEEEEC-
T ss_pred ------CeeEEEEEE-EeCCHHHHHHHHHCCCEEEEEeecccC-CCCcEEEEEecC
Confidence 111 2222 223789999999999999998877654 589999998865
No 18
>1mk4_A Hypothetical protein YQJY; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: d.108.1.1
Probab=98.57 E-value=2.3e-07 Score=84.59 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=61.6
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccc
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVH 493 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~ 493 (835)
..+.|..++|+|+|||+|||+++++.+.++.....
T Consensus 67 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g--------------------------------------------- 101 (157)
T 1mk4_A 67 ETAYIHFSGVHPDFRKMQIGKQLYDVFIETVKQRG--------------------------------------------- 101 (157)
T ss_dssp TEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTT---------------------------------------------
T ss_pred CeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCC---------------------------------------------
Confidence 35688899999999999999999999998874211
Q ss_pred ccccCCCCcceE-EEecCCCHHHHHHHHHCCCeEEE---------eeecccCCCCCceEEEEccC
Q 003262 494 LRERQPEKLNYI-GVSFGLTLDLFRFWRKHKFAPFY---------VSQNANAVTGEHTCMVLKPL 548 (835)
Q Consensus 494 l~e~~~~~lDyl-GvSFGlT~~Ll~FWkk~GF~pVy---------lrq~~ne~TGEhS~IMlr~L 548 (835)
+..+ .....-+....+||+|+||.++. +...++ ..|++.++|.|.|
T Consensus 102 --------~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~k~l 157 (157)
T 1mk4_A 102 --------CTRVKCVTSPVNKVSIAYHTKLGFDIEKGTKTVNGISVFANYD-GPGQDRVLFVKNI 157 (157)
T ss_dssp --------CCEEEEEECTTCHHHHHHHHHTTCEECCCSEEETTEEEBTTTT-STTCCBEEEEEEC
T ss_pred --------CcEEEEEEcCCCHHHHHHHHHcCCEEcCCcceecceeeecCCC-CCCceeEEEEecC
Confidence 1111 11233367899999999999998 666654 4789999999875
No 19
>1n71_A AAC(6')-II; aminoglycoside 6'-N-acetyltransferase, antibiotic resistance, coenzyme A; HET: COA; 1.80A {Enterococcus faecium} SCOP: d.108.1.1 PDB: 2a4n_A* 1b87_A*
Probab=98.57 E-value=1.3e-06 Score=83.28 Aligned_cols=101 Identities=18% Similarity=0.166 Sum_probs=62.1
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHhcccc-cccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccc
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLT-TFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLV 492 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~-~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~ 492 (835)
..+.|..++|||+|||+|||+++++.+.+++..... .+.- .+.. ++ .+++++.+
T Consensus 69 ~~~~i~~l~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~i~l------------~~~~---------~n--~~s~~~~~-- 123 (180)
T 1n71_A 69 TGWELHPLVVESSRRKNQIGTRLVNYLEKEVASRGGITIYL------------GTDD---------LD--HGTTLSQT-- 123 (180)
T ss_dssp TEEEEEEEEECTTSCSSSHHHHHHHHHHHHHHHTTCCEEEE------------EEEC---------SS--SCBTTSSS--
T ss_pred ceEEEEEEEEccccccCCHHHHHHHHHHHHHHHCCCcEEEE------------EecC---------Cc--cccccccc--
Confidence 347899999999999999999999999988742211 0000 0000 00 00000000
Q ss_pred cccccCCCCcceEEEec-------CCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCCc
Q 003262 493 HLRERQPEKLNYIGVSF-------GLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHS 550 (835)
Q Consensus 493 ~l~e~~~~~lDylGvSF-------GlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~~ 550 (835)
-=|.|| | .......+||+|+||.++.....++. .|.+.++|.|.|++
T Consensus 124 ---------~~~~~~-~~~~~~v~n~~~~a~~~y~k~GF~~~~~~~~~~~-~~~~~~~m~k~l~~ 177 (180)
T 1n71_A 124 ---------DLYEHT-FDKVASIQNLREHPYEFYEKLGYKIVGVLPNANG-WDKPDIWMAKTIIP 177 (180)
T ss_dssp ---------CTTSSH-HHHHHTCCBSSCCTHHHHHHTTCEEEEEETTTTS-TTCCEEEEEEECSC
T ss_pred ---------cccccc-chhhhhhcccchHHHHHHHHcCcEEEeeecccCC-CCCCcEEEEecCCC
Confidence 000000 0 00114689999999999998887764 68899999999975
No 20
>2q7b_A Acetyltransferase, GNAT family; NP_689019.1, structural GEN joint center for structural genomics, JCSG; HET: MSE FLC; 2.00A {Streptococcus agalactiae 2603V}
Probab=98.57 E-value=8.9e-07 Score=84.42 Aligned_cols=115 Identities=10% Similarity=0.101 Sum_probs=82.7
Q ss_pred HHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCCCCCcc
Q 003262 336 DLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSG 415 (835)
Q Consensus 336 DLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~lsg 415 (835)
+++...+.+...+||+.. + .+++|++.+...+ -..
T Consensus 61 ~~~~~~~~~~~~~~v~~~-----~---g~ivG~~~~~~~~-------------------------------------~~~ 95 (181)
T 2q7b_A 61 QIENYYQNRKGQFWIALE-----N---EKVVGSIALLRID-------------------------------------DKT 95 (181)
T ss_dssp CHHHHTGGGTCEEEEEEE-----T---TEEEEEEEEEECS-------------------------------------SSE
T ss_pred HHHHHHhCCCcEEEEEEE-----C---CEEEEEEEEEEcC-------------------------------------CCE
Confidence 466666667788888752 1 3689988776432 014
Q ss_pred cEEEEEeeCccccc--CChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccc
Q 003262 416 ARIVRIATHPSAMR--LGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVH 493 (835)
Q Consensus 416 aRIVRIAvhPd~q~--mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~ 493 (835)
+.|..++|+|+||| +|||+++++.+.+++....
T Consensus 96 ~~i~~~~V~p~~rg~~~Gig~~ll~~~~~~a~~~g--------------------------------------------- 130 (181)
T 2q7b_A 96 AVLKKFFTYPKYRGNPVRLGRKLFERFMLFARASK--------------------------------------------- 130 (181)
T ss_dssp EEEEEEEECGGGSSTTTCHHHHHHHHHHHHHHHTT---------------------------------------------
T ss_pred EEEEEEEEChhhcCccccHHHHHHHHHHHHHHHCC---------------------------------------------
Confidence 78899999999999 9999999999998874211
Q ss_pred ccccCCCCcc--eEEEecCCCHHHHHHHHHCCCeEEEeeec--ccCCCCCceEEEEccCC
Q 003262 494 LRERQPEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQN--ANAVTGEHTCMVLKPLH 549 (835)
Q Consensus 494 l~e~~~~~lD--ylGvSFGlT~~Ll~FWkk~GF~pVylrq~--~ne~TGEhS~IMlr~L~ 549 (835)
+. ++. .+--+....+||+|+||.++..... .+...|+++++|-+.|+
T Consensus 131 --------~~~i~l~-~~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~~~~~~~~~~~~L~ 181 (181)
T 2q7b_A 131 --------FTRIVLD-TPEKEKRSHFFYENQGFKQITRDELDVDYIFPDRDSRIYVKLLD 181 (181)
T ss_dssp --------CCEEEEE-EETTCHHHHHHHHTTTCEEECTTTCCCSCCCCSSSEEEEEEEC-
T ss_pred --------CcEEEEE-ecCCCHHHHHHHHHCCCEEeeeeeccccccCCCcceeeEEEecC
Confidence 11 122 2334788999999999999987642 34446899999998763
No 21
>2fiw_A GCN5-related N-acetyltransferase:aminotransferase II; alpha-beta-alpha sandwich, GCN4-related acetyltransferase, S genomics, PSI; HET: ACO; 2.35A {Rhodopseudomonas palustris} SCOP: d.108.1.1
Probab=98.57 E-value=5.1e-07 Score=83.54 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=56.8
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccc
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLR 495 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~ 495 (835)
+.|..++|+|+|||+|||+++++.+.+++...
T Consensus 83 ~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~------------------------------------------------ 114 (172)
T 2fiw_A 83 DHIDMLYVHPDYVGRDVGTTLIDALEKLAGAR------------------------------------------------ 114 (172)
T ss_dssp TEEEEEEECGGGCSSSHHHHHHHHHHHHHHTT------------------------------------------------
T ss_pred cEEEEEEECccccCcCHHHHHHHHHHHHHHhc------------------------------------------------
Confidence 57899999999999999999999999886421
Q ss_pred ccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCC--ceEEEEccCCc
Q 003262 496 ERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGE--HTCMVLKPLHS 550 (835)
Q Consensus 496 e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGE--hS~IMlr~L~~ 550 (835)
+++.+-+.- +....+||+|+||.++.-.... ..|+ +.++|.+.+..
T Consensus 115 -----g~~~i~~~~--n~~a~~~y~k~GF~~~~~~~~~--~~g~~~~~~~~~~~l~~ 162 (172)
T 2fiw_A 115 -----GALILTVDA--SDNAAEFFAKRGYVAKQRNTVS--INGEWLANTTMTKSLAD 162 (172)
T ss_dssp -----TCSEEEEEE--CTTTHHHHHTTTCEEEEEEEEE--ETTEEEEEEEEEEEC--
T ss_pred -----CCcEEEEEe--CHHHHHHHHHcCCEEecceeEe--ECCEEeeeEEEEEeccc
Confidence 112222211 6889999999999998754433 3453 56889998864
No 22
>3ey5_A Acetyltransferase-like, GNAT family; structural genomics, APC60148, GNAT famil protein structure initiative; 2.15A {Bacteroides thetaiotaomicron}
Probab=98.56 E-value=2.7e-06 Score=81.07 Aligned_cols=86 Identities=19% Similarity=0.158 Sum_probs=61.9
Q ss_pred cHHHHHHHHHHHHhc---ccCCChhHHHHhhc-CCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcC
Q 003262 314 SELFLQRMMALYVSS---HYKNSPNDLQLMAD-APAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEG 389 (835)
Q Consensus 314 sE~fLq~~~aLlV~A---HYkNsPnDLqlL~D-aPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G 389 (835)
+...+.+++.++..+ ..+.+..++..+.+ .|..++|++.. + .+++|.+.+...+
T Consensus 14 d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~---~~ivG~~~~~~~~-------------- 71 (181)
T 3ey5_A 14 DVQHYKFMEELLVESFPPEEYRELEHLREYTDRIGNFHNNIIFD-----D---DLPIGFITYWDFD-------------- 71 (181)
T ss_dssp SHHHHHHHHHHHHHHSCGGGSCCHHHHHHHHHHCTTEEEEEEEE-----T---TEEEEEEEEEECS--------------
T ss_pred cHHHHHHHHHHHHHhCCccccchHHHHHHHhccCCCeEEEEEEE-----C---CEEEEEEEEEEcC--------------
Confidence 334556667776554 33445567887776 88888888862 1 3688887665211
Q ss_pred CCCCCCchhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 390 HQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 390 ~Rp~GdLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|..|+|+|+|||+|||+++|+.+.+++.
T Consensus 72 ------------------------~~~~i~~l~V~p~~rg~GiG~~Ll~~~~~~a~ 103 (181)
T 3ey5_A 72 ------------------------EFYYVEHFATNPALRNGGYGKRTLEHLCEFLK 103 (181)
T ss_dssp ------------------------SCEEEEEEEECGGGTTSSHHHHHHHHHHHHCC
T ss_pred ------------------------CeEEEEEEEEchhhcCCCHHHHHHHHHHHhhh
Confidence 23689999999999999999999999998764
No 23
>2i6c_A Putative acetyltransferase; GNAT family, structural genomic, structur genomics, PSI-2, protein structure initiative; HET: MSE EPE; 1.30A {Pseudomonas aeruginosa} SCOP: d.108.1.1 PDB: 3pgp_A*
Probab=98.56 E-value=5.1e-07 Score=82.12 Aligned_cols=123 Identities=14% Similarity=0.127 Sum_probs=85.1
Q ss_pred cccCCChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhcc
Q 003262 328 SHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRD 407 (835)
Q Consensus 328 AHYkNsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d 407 (835)
.++..++.++....+.+.+ .|++.. + .+++|++.+....
T Consensus 33 ~~~~~~~~~~~~~~~~~~~-~~v~~~-----~---~~~vG~~~~~~~~-------------------------------- 71 (160)
T 2i6c_A 33 AIWPFSVAQLAAAIAERRG-STVAVH-----D---GQVLGFANFYQWQ-------------------------------- 71 (160)
T ss_dssp CCSSCCHHHHHHHHHHSEE-EEEEEE-----T---TEEEEEEEEEEEE--------------------------------
T ss_pred ccCccCHHHHHHHhccCCc-eEEEEe-----C---CeEEEEEEEEEEc--------------------------------
Confidence 3566788888766655543 445441 1 3689988876432
Q ss_pred CCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCC
Q 003262 408 AVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNL 487 (835)
Q Consensus 408 ~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ 487 (835)
.-..+.|..++|+|+|||+|||+++++.+.++...+.
T Consensus 72 ----~~~~~~i~~~~v~p~~rg~Gig~~l~~~~~~~~~~~~--------------------------------------- 108 (160)
T 2i6c_A 72 ----HGDFCALGNMMVAPAARGLGVARYLIGVMENLAREQY--------------------------------------- 108 (160)
T ss_dssp ----TTTEEEEEEEEECGGGTTTTHHHHHHHHHHHHHHHHH---------------------------------------
T ss_pred ----CCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhhC---------------------------------------
Confidence 0134788999999999999999999999998874310
Q ss_pred CcccccccccCCCCcc--eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCC--ceEEEEccCC
Q 003262 488 PPLLVHLRERQPEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGE--HTCMVLKPLH 549 (835)
Q Consensus 488 ppLl~~l~e~~~~~lD--ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGE--hS~IMlr~L~ 549 (835)
+++ ++.| +--+....+||+|+||.++....... ..|+ ..++|-+.|+
T Consensus 109 -------------g~~~i~l~~-~~~n~~a~~~y~k~Gf~~~~~~~~~~-~~g~~~~~~~~~~~l~ 159 (160)
T 2i6c_A 109 -------------KARLMKISC-FNANAAGLLLYTQLGYQPRAIAERHD-PDGRRVALIQMDKPLE 159 (160)
T ss_dssp -------------CCSEEEEEE-ETTCHHHHHHHHHTTCEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred -------------CccEEEEEE-ecCCHHHHHHHHHcCCEEcccccccC-CCCCeeeeeeeeccCC
Confidence 011 1222 22378999999999999999877664 5676 4577888775
No 24
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.55 E-value=7.1e-07 Score=103.36 Aligned_cols=168 Identities=24% Similarity=0.266 Sum_probs=113.0
Q ss_pred ccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcc
Q 003262 54 KKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNA 133 (835)
Q Consensus 54 ~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~ 133 (835)
....|.+|..|+..+.. +..++|||+.|.|||+++.-.+..+...| .+|+++||+..+++.|-+-+. .++
T Consensus 187 ~~~L~~~Q~~Av~~~~~-------~~~~~I~G~pGTGKTt~i~~l~~~l~~~g-~~Vl~~ApT~~Aa~~L~e~~~--~~a 256 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG-------HRLVVLTGGPGTGKSTTTKAVADLAESLG-LEVGLCAPTGKAARRLGEVTG--RTA 256 (574)
T ss_dssp TTTCCHHHHHHHHHHTT-------CSEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHHT--SCE
T ss_pred cCCCCHHHHHHHHHHHh-------CCEEEEEcCCCCCHHHHHHHHHHHHHhcC-CeEEEecCcHHHHHHhHhhhc--ccH
Confidence 34578899999876542 46899999999999999987777777777 489999999999998876542 111
Q ss_pred ccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhhcC----CeEE
Q 003262 134 IEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLGP----YLVF 209 (835)
Q Consensus 134 lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~~----y~vf 209 (835)
.-......+. . . .|. .+ ......+|+||||||.+++.+++..|+.. -.++
T Consensus 257 ~Tih~ll~~~--------------------~--~--~~~-~~-~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~li 310 (574)
T 3e1s_A 257 STVHRLLGYG--------------------P--Q--GFR-HN-HLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVL 310 (574)
T ss_dssp EEHHHHTTEE--------------------T--T--EES-CS-SSSCCSCSEEEECCGGGCCHHHHHHHHTTSCTTCEEE
T ss_pred HHHHHHHcCC--------------------c--c--hhh-hh-hcccccCCEEEEcCccCCCHHHHHHHHHhCcCCCEEE
Confidence 0000000000 0 0 111 01 11123689999999999999999999852 2566
Q ss_pred EEeeccCCcccCCchhHHHHHHhhhcCCCCCCCcCCCccCCceeEEEeccccccCCCCchHHHHHHh
Q 003262 210 LSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGL 276 (835)
Q Consensus 210 lsSTi~GYEGTGR~fsLKl~~~L~~~~~~~~~~~~~~~~~r~~~ei~L~ePIRya~gDPvE~WLn~l 276 (835)
|....+=--..|.|-.++.+.. . +..+.|++..|.+.+.++-.+.+.+
T Consensus 311 lvGD~~QL~~v~~g~~~~~l~~---~----------------~~~~~L~~~~R~~~~s~I~~~a~~i 358 (574)
T 3e1s_A 311 LVGDTDQLPPVDAGLPLLALAQ---A----------------APTIKLTQVYRQAAKNPIIQAAHGL 358 (574)
T ss_dssp EEECTTSCCCSSSCCHHHHHHH---H----------------SCEEECCCCCHHHHTCHHHHHHHHH
T ss_pred EEecccccCCccCCcHHHHHHh---c----------------CCEEEcceeEeCCCccHHHHHHHHH
Confidence 7766665444444444333333 1 3479999999999888998888775
No 25
>1kux_A Aralkylamine, serotonin N-acetyltransferase; enzyme-inhibitor complex, bisubstrate analog, alternate conformations; HET: CA3; 1.80A {Ovis aries} SCOP: d.108.1.1 PDB: 1kuv_A* 1kuy_A* 1l0c_A* 1ib1_E*
Probab=98.54 E-value=9.1e-07 Score=85.40 Aligned_cols=132 Identities=15% Similarity=0.071 Sum_probs=86.7
Q ss_pred CCChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeec--CCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccC
Q 003262 331 KNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLE--GQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDA 408 (835)
Q Consensus 331 kNsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValE--G~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~ 408 (835)
..+++++....+.+....||+.. + .+++|++.+..- +.+..+. +..+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~v~~~-----~---~~ivG~~~~~~~~~~~~~~~~-------------------~~~~---- 112 (207)
T 1kux_A 64 PLNLDEVQHFLTLCPELSLGWFV-----E---GRLVAFIIGSLWDEERLTQES-------------------LALH---- 112 (207)
T ss_dssp SCCHHHHHHHHHHCGGGEEEEEE-----T---TEEEEEEEEEEECSSSCCGGG-------------------GGCC----
T ss_pred ccCHHHHHHHHhhCCCeEEEEEE-----C---CEEEEEEEEEeeccccccccc-------------------cccc----
Confidence 44678887666655566777652 1 368898877642 2222211 0000
Q ss_pred CCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCC
Q 003262 409 VFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLP 488 (835)
Q Consensus 409 ~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~p 488 (835)
-..-..+.|..|+|+|+|||+|||+++++.+.+++....
T Consensus 113 -~~~~~~~~i~~l~V~p~~rg~Gig~~Ll~~~~~~~~~~~---------------------------------------- 151 (207)
T 1kux_A 113 -RPRGHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQP---------------------------------------- 151 (207)
T ss_dssp -CTTCCEEEEEEEEECGGGCSSSHHHHHHHHHHHHHTTST----------------------------------------
T ss_pred -CCCCCEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHhcC----------------------------------------
Confidence 122356899999999999999999999999998874210
Q ss_pred cccccccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCCc
Q 003262 489 PLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHS 550 (835)
Q Consensus 489 pLl~~l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~~ 550 (835)
++..+-+ ..+....+||+|+||.++.- ......|..-..|.+.|..
T Consensus 152 ------------g~~~i~l--~~n~~a~~~y~k~GF~~~~~--~~~~~~g~~~~~m~~~l~~ 197 (207)
T 1kux_A 152 ------------AVRRAVL--MCEDALVPFYQRFGFHPAGP--CAIVVGSLTFTEMHCSLRG 197 (207)
T ss_dssp ------------TCCEEEE--EECGGGHHHHHTTTCEEEEE--CSCCBTTBCCEEEEEEC--
T ss_pred ------------CceEEEE--eecHHHHHHHHHCCCEECCc--ccccCCCceeEEEEEccCC
Confidence 1222222 12688999999999999983 2333568888999999874
No 26
>1s3z_A Aminoglycoside 6'-N-acetyltransferase; GNAT, aminoglycoside ribostamycin; HET: COA RIO; 2.00A {Salmonella enteritidis} SCOP: d.108.1.1 PDB: 1s5k_A* 1s60_A* 2vbq_A*
Probab=98.52 E-value=1.9e-06 Score=79.75 Aligned_cols=91 Identities=12% Similarity=0.050 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcccCCCh----hHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCC
Q 003262 318 LQRMMALYVSSHYKNSP----NDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPS 393 (835)
Q Consensus 318 Lq~~~aLlV~AHYkNsP----nDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~ 393 (835)
+..+..|+..+.-...+ .+++.+.+.|...+||+.. + .+++|++.+........
T Consensus 31 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~---~~ivG~~~~~~~~~~~~-------------- 88 (165)
T 1s3z_A 31 LEHWRGLRKQLWPGHPDDAHLADGEEILQADHLASFIAMA-----D---GVAIGFADASIRHDYVN-------------- 88 (165)
T ss_dssp HHHHHHHHHHHSTTSCHHHHHHHHHHHHHCSSEEEEEEEE-----T---TEEEEEEEEEEECSCCT--------------
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHhcCCCceEEEEEE-----C---CEEEEEEEEEecccccc--------------
Confidence 34445555554434444 4467777778888888762 1 36899988876322110
Q ss_pred CCchhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 394 GDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 394 GdLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
....-..+.|..|+|+|+|||+|||+++++.+.+++.
T Consensus 89 ---------------~~~~~~~~~i~~~~V~p~~rg~Gig~~ll~~~~~~~~ 125 (165)
T 1s3z_A 89 ---------------GCDSSPVVFLEGIFVLPSFRQRGVAKQLIAAVQRWGT 125 (165)
T ss_dssp ---------------TCSSSSEEEEEEEEECGGGCSSSHHHHHHHHHHHHHH
T ss_pred ---------------cccCCCcEEEEEEEEChhhcCCcHHHHHHHHHHHHHH
Confidence 0011245889999999999999999999999998874
No 27
>3pp9_A Putative streptothricin acetyltransferase; toxin production resistance, infectious diseases, structural genomics; HET: MSE ACO; 1.60A {Bacillus anthracis}
Probab=98.52 E-value=9.2e-07 Score=83.78 Aligned_cols=117 Identities=14% Similarity=0.074 Sum_probs=83.4
Q ss_pred hHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCCCCCc
Q 003262 335 NDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLS 414 (835)
Q Consensus 335 nDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~ls 414 (835)
+.++.+...|...+||+.. + .+++|++.+..... .
T Consensus 65 ~~~~~~~~~~~~~~~v~~~-----~---~~~vG~~~~~~~~~-------------------------------------~ 99 (187)
T 3pp9_A 65 LVYNEYINKPNQIIYIALL-----H---NQIIGFIVLKKNWN-------------------------------------N 99 (187)
T ss_dssp CCGGGGSSCSSEEEEEEEE-----T---TEEEEEEEEEECTT-------------------------------------S
T ss_pred HHHHHHHhCCCcEEEEEEE-----C---CeEEEEEEEEcCCC-------------------------------------C
Confidence 3466667778888888862 1 36899887764210 2
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccc
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHL 494 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l 494 (835)
.+.|..++|+|+|||+|||+++++.+.+++....
T Consensus 100 ~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~~g---------------------------------------------- 133 (187)
T 3pp9_A 100 YAYIEDITVDKKYRTLGVGKRLIAQAKQWAKEGN---------------------------------------------- 133 (187)
T ss_dssp CEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTT----------------------------------------------
T ss_pred eEEEEEEEECHHHhcCCHHHHHHHHHHHHHHHCC----------------------------------------------
Confidence 3688899999999999999999999998874211
Q ss_pred cccCCCCcceE-EEecCCCHHHHHHHHHCCCeEEEeeecc----cCCCCCceEEEEccCC
Q 003262 495 RERQPEKLNYI-GVSFGLTLDLFRFWRKHKFAPFYVSQNA----NAVTGEHTCMVLKPLH 549 (835)
Q Consensus 495 ~e~~~~~lDyl-GvSFGlT~~Ll~FWkk~GF~pVylrq~~----ne~TGEhS~IMlr~L~ 549 (835)
++.+ .....-+....+||+|+||.++...... +..+||.+.+|-+.|.
T Consensus 134 -------~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~~~~~~e~~~~~~~~l~ 186 (187)
T 3pp9_A 134 -------MPGIMLETQNNNVAACKFYEKCGFVIGGFDFLVYKGLNMTSDEVAIYWYLHFD 186 (187)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHTTCEEEEEESSGGGGTCSSSCCCEEEEEEEC-
T ss_pred -------CCEEEEEEecCCHHHHHHHHHCCCEEeceEeeeccCCcccCCcEEEEEEeecC
Confidence 1111 1223336889999999999999865443 3457899998887764
No 28
>3fix_A N-acetyltransferase; termoplasma acidophilum, structural GEN PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.30A {Thermoplasma acidophilum} PDB: 3f0a_A* 3k9u_A* 3ne7_A*
Probab=98.50 E-value=3.8e-07 Score=86.36 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=29.2
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|..|+|+|+|||+|||+++++.+.+++.
T Consensus 109 ~~~~i~~l~V~p~~rg~Gig~~Ll~~~~~~a~ 140 (183)
T 3fix_A 109 NKAELLRLYLKPEYTHKKIGKTLLLEAEKIMK 140 (183)
T ss_dssp TEEEEEEEEECGGGCCHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999998874
No 29
>2ob0_A Human MAK3 homolog; acetyltransferase, structural genomics consortium, SGC; HET: ACO; 1.80A {Homo sapiens} PDB: 2psw_A* 3tfy_A*
Probab=98.49 E-value=2.8e-06 Score=78.78 Aligned_cols=122 Identities=12% Similarity=0.083 Sum_probs=83.1
Q ss_pred ChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCCCC
Q 003262 333 SPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPS 412 (835)
Q Consensus 333 sPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~ 412 (835)
++..++.+.+.|. ..|++.. + .+++|++.+.....- .
T Consensus 33 ~~~~~~~~~~~~~-~~~~~~~-----~---~~~vG~~~~~~~~~~----------------------------------~ 69 (170)
T 2ob0_A 33 NDKFYKDVLEVGE-LAKLAYF-----N---DIAVGAVCCRVDHSQ----------------------------------N 69 (170)
T ss_dssp CHHHHHHHTTSGG-GEEEEEE-----T---TEEEEEEEEEEEEET----------------------------------T
T ss_pred CHHHHHHHhcCCC-cEEEEEE-----C---CeEEEEEEEEEEecC----------------------------------C
Confidence 4566777777674 4555541 1 368888877644210 0
Q ss_pred CcccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccc
Q 003262 413 LSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLV 492 (835)
Q Consensus 413 lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~ 492 (835)
...+.|..|+|+|+|||+|||+++++.+.+++....
T Consensus 70 ~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~~-------------------------------------------- 105 (170)
T 2ob0_A 70 QKRLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDG-------------------------------------------- 105 (170)
T ss_dssp EEEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHHC--------------------------------------------
T ss_pred CcEEEEEEEEECHHHcCcCHHHHHHHHHHHHHHhcC--------------------------------------------
Confidence 146789999999999999999999999998875320
Q ss_pred cccccCCCCcc--eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCC--CceEEEEccCCcc
Q 003262 493 HLRERQPEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTG--EHTCMVLKPLHSE 551 (835)
Q Consensus 493 ~l~e~~~~~lD--ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TG--EhS~IMlr~L~~~ 551 (835)
++. ++.| .--+....+||+|+||.++.....+.. .| .+.++|-+.|...
T Consensus 106 --------g~~~i~l~~-~~~N~~a~~~y~k~GF~~~~~~~~~~~-~g~~~~~~~m~~~l~~~ 158 (170)
T 2ob0_A 106 --------TFDNIYLHV-QISNESAIDFYRKFGFEIIETKKNYYK-RIEPADAHVLQKNLKVP 158 (170)
T ss_dssp --------CCSEEEEEE-ETTCHHHHHHHHHTTCEEEEEETTCCS-SSSSCCEEEEEEEC---
T ss_pred --------CccEEEEEE-ecCCHHHHHHHHHcCCEEeEeeecccc-CCCCCccEEEEEeccCC
Confidence 111 1122 223678999999999999988776543 34 6789999998754
No 30
>1xeb_A Hypothetical protein PA0115; midwest center for structural genomics, MCSG, structural GEN protein structure initiative, PSI, APC22065; 2.35A {Pseudomonas aeruginosa} SCOP: d.108.1.1
Probab=98.48 E-value=5.3e-07 Score=82.82 Aligned_cols=75 Identities=15% Similarity=0.123 Sum_probs=55.5
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHhcc-cccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccc
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQ-LTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLV 492 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~-~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~ 492 (835)
..+.|.+|+|+|+|||+|||+++++.+.++...+ ..
T Consensus 74 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~~g~------------------------------------------- 110 (150)
T 1xeb_A 74 GQVVIGRVVSSSAARGQGLGHQLMERALQAAERLWLD------------------------------------------- 110 (150)
T ss_dssp TCEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHHHTT-------------------------------------------
T ss_pred CeEEEEEEEECHHHccCCHHHHHHHHHHHHHHHhcCC-------------------------------------------
Confidence 4578999999999999999999999999876422 00
Q ss_pred cccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEc
Q 003262 493 HLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLK 546 (835)
Q Consensus 493 ~l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr 546 (835)
..=++.+ +....+||+|+||.++. ..+. ..|...+.|.|
T Consensus 111 --------~~i~l~~----n~~a~~~y~~~Gf~~~~--~~~~-~~g~~~~~m~~ 149 (150)
T 1xeb_A 111 --------TPVYLSA----QAHLQAYYGRYGFVAVT--EVYL-EDDIPHIGMRR 149 (150)
T ss_dssp --------CCEEEEE----ESTTHHHHHTTTEEECS--CCEE-ETTEEEEEEEE
T ss_pred --------CEEEEec----hhHHHHHHHHcCCEECC--cccc-CCCCceEEEEc
Confidence 0012333 46789999999999887 3332 35888888876
No 31
>2cy2_A TTHA1209, probable acetyltransferase; structural genomics, unknown function, NPPSFA; HET: ACO; 2.00A {Thermus thermophilus} SCOP: d.108.1.1 PDB: 1wk4_A*
Probab=98.48 E-value=4.1e-06 Score=76.49 Aligned_cols=121 Identities=12% Similarity=-0.019 Sum_probs=79.1
Q ss_pred HHHHhhcCCC--ceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCCCCC
Q 003262 336 DLQLMADAPA--HHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSL 413 (835)
Q Consensus 336 DLqlL~DaPa--h~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~l 413 (835)
.+....+.+. ...|++.. .+ .+++|++.+....... ..-
T Consensus 46 ~~~~~~~~~~~~~~~~v~~~----~~---~~~vG~~~~~~~~~~~--------------------------------~~~ 86 (174)
T 2cy2_A 46 RWAQRLKTPTWPGRLFVAES----ES---GEVVGFAAFGPDRASG--------------------------------FPG 86 (174)
T ss_dssp HHHHHHHCTTCCCEEEEEEC----TT---SCEEEEEEEEECCSCS--------------------------------CTT
T ss_pred HHHHHHcCCCcCceEEEEEe----cC---CEEEEEEEEecCCCCC--------------------------------CCC
Confidence 4555555566 56676651 11 3799998887553210 112
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccc
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVH 493 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~ 493 (835)
..+.|..++|+|+|||+|||+++++.+.+++....
T Consensus 87 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g--------------------------------------------- 121 (174)
T 2cy2_A 87 YTAELWAIYVLPTWQRKGLGRALFHEGARLLQAEG--------------------------------------------- 121 (174)
T ss_dssp CCEEEEEEEECGGGCSSSHHHHHHHHHHHHHHHTT---------------------------------------------
T ss_pred CceEEEEEEECHHHhCcCHHHHHHHHHHHHHHhCC---------------------------------------------
Confidence 44688899999999999999999999998864211
Q ss_pred ccccCCCCcc--eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCC
Q 003262 494 LRERQPEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLH 549 (835)
Q Consensus 494 l~e~~~~~lD--ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~ 549 (835)
+. ++.| +.-+....+||+|+||.++........-..-+.++|.+++.
T Consensus 122 --------~~~i~l~~-~~~n~~a~~~y~k~Gf~~~~~~~~~~~g~~~~~~~~~~~~~ 170 (174)
T 2cy2_A 122 --------YGRMLVWV-LKENPKGRGFYEHLGGVLLGEREIELGGAKLWEVAYGFDLG 170 (174)
T ss_dssp --------CCEEEEEE-ETTCHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEECS
T ss_pred --------CceEEEEE-ECCChhHHHHHHHcCCeeeceEEEecCCcceeEEEEEEcCC
Confidence 11 1222 23368899999999999998654432212245577777665
No 32
>3t9y_A Acetyltransferase, GNAT family; PSI-biology, structural genomics, midwest center for structu genomics, MCSG; HET: PGE; 2.00A {Staphylococcus aureus}
Probab=98.48 E-value=5.2e-07 Score=81.39 Aligned_cols=92 Identities=18% Similarity=0.255 Sum_probs=65.3
Q ss_pred cHHHHHHHHHHHHhcccCCChhHHH----HhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcC
Q 003262 314 SELFLQRMMALYVSSHYKNSPNDLQ----LMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEG 389 (835)
Q Consensus 314 sE~fLq~~~aLlV~AHYkNsPnDLq----lL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G 389 (835)
.+.=+..+..|+-...|-.++.++. .+.+.|...+|++.. + .+++|.+.+......
T Consensus 15 ~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~---~~~vG~~~~~~~~~~------------ 74 (150)
T 3t9y_A 15 DFEKLNQLCKLYDDLGYPTNENDLKKRLKKITNHDDYFLLLLIK-----E---NKIIGLSGMCKMMFY------------ 74 (150)
T ss_dssp GGGCHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSTTEEEEEEEE-----T---TEEEEEEEEEEEECS------------
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhcCCceEEEEEEE-----C---CEEEEEEEEEEeccc------------
Confidence 3344556666766667878887764 355568888888762 1 368888877643211
Q ss_pred CCCCCCchhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 390 HQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 390 ~Rp~GdLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
...-..+.|..|+|+|+|||+|||+++++.+.+++.
T Consensus 75 --------------------~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~ 110 (150)
T 3t9y_A 75 --------------------EKNAEYMRILAFVIHSEFRKKGYGKRLLADSEEFSK 110 (150)
T ss_dssp --------------------SSSCEEEEEEEEEECGGGCSSSHHHHHHHHHHHHHH
T ss_pred --------------------cccCCEEEEEEEEECHHHhccCHHHHHHHHHHHHHH
Confidence 112246789999999999999999999999998874
No 33
>2cnt_A Modification of 30S ribosomal subunit protein S18; N-alpha acetylation, GCN5-N-acetyltransferase, ribosomal Pro acetyltransferase, GNAT; HET: COA; 2.4A {Salmonella typhimurium} PDB: 2cnm_A* 2cns_A*
Probab=98.48 E-value=2.1e-06 Score=80.00 Aligned_cols=134 Identities=13% Similarity=0.108 Sum_probs=89.5
Q ss_pred HHHHHHHHHhcc-cCCChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCc
Q 003262 318 LQRMMALYVSSH-YKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQ 396 (835)
Q Consensus 318 Lq~~~aLlV~AH-YkNsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdL 396 (835)
+..++.|+..+. ..-++.++....+.+ ...|++.. + .+++|++.+...+
T Consensus 12 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~-----~---~~~vG~~~~~~~~--------------------- 61 (160)
T 2cnt_A 12 LPAAWQIEQRAHAFPWSEKTFFGNQGER-YLNLKLTA-----D---DRMAAFAITQVVL--------------------- 61 (160)
T ss_dssp HHHHHHHHHHHCSSCCCHHHHHHSCSTT-BCCEEEEE-----T---TEEEEEEEEEEET---------------------
T ss_pred HHHHHHHHHhhcccCCCHHHHHHHhccC-ccEEEEEE-----C---CeEEEEEEEEecC---------------------
Confidence 344445554433 234677887777644 45566541 1 3689988776431
Q ss_pred hhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhc
Q 003262 397 IPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSL 476 (835)
Q Consensus 397 IPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l 476 (835)
..+.|..++|+|+|||+|||+++++.+.+++...
T Consensus 62 -----------------~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~----------------------------- 95 (160)
T 2cnt_A 62 -----------------DEATLFNIAVDPDFQRRGLGRMLLEHLIDELETR----------------------------- 95 (160)
T ss_dssp -----------------TEEEEEEEEECGGGCSSSHHHHHHHHHHHHHHHT-----------------------------
T ss_pred -----------------CceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHc-----------------------------
Confidence 1268999999999999999999999999887421
Q ss_pred ccccccCCCCCCcccccccccCCCCcceEEE-ecCCCHHHHHHHHHCCCeEEEeeecccCCCC--CceEEEEccCCcc
Q 003262 477 LEENIKPKTNLPPLLVHLRERQPEKLNYIGV-SFGLTLDLFRFWRKHKFAPFYVSQNANAVTG--EHTCMVLKPLHSE 551 (835)
Q Consensus 477 ~~e~i~~r~~~ppLl~~l~e~~~~~lDylGv-SFGlT~~Ll~FWkk~GF~pVylrq~~ne~TG--EhS~IMlr~L~~~ 551 (835)
++..+.+ ..--+....+||+|+||.++..........| ...++|-+.+...
T Consensus 96 ------------------------g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 149 (160)
T 2cnt_A 96 ------------------------GVVTLWLEVRASNAAAIALYESLGFNEATIRRNYYPTAQGHEDAIIMALPISMK 149 (160)
T ss_dssp ------------------------TCCEEEEEEETTCHHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEECCCC
T ss_pred ------------------------CCcEEEEEEecCCHHHHHHHHHCCCEEEEEEeeeeecCCCCccEEEEEeechhh
Confidence 1111111 1223688999999999999988877654333 5678888777654
No 34
>3bln_A Acetyltransferase GNAT family; NP_981174.1, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE MRD GOL; 1.31A {Bacillus cereus}
Probab=98.47 E-value=4.2e-06 Score=75.35 Aligned_cols=77 Identities=14% Similarity=0.209 Sum_probs=58.8
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccc
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHL 494 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l 494 (835)
.+.|..++|+|+|||+|||+++++.+.+++..+
T Consensus 64 ~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~----------------------------------------------- 96 (143)
T 3bln_A 64 CTFLSLIIVSPTKRRRGYASSLLSYMLSHSPTQ----------------------------------------------- 96 (143)
T ss_dssp EEEEEEEEECTTCCSSCHHHHHHHHHHHHCSSS-----------------------------------------------
T ss_pred ceEEEEEEECHHHcCCChHHHHHHHHHHHHhhC-----------------------------------------------
Confidence 567999999999999999999999998875311
Q ss_pred cccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccC
Q 003262 495 RERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPL 548 (835)
Q Consensus 495 ~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L 548 (835)
++ ++ ..+.-+....+||+|+||.++.....++ .|....+|.+..
T Consensus 97 ------~i-~~-~~~~~n~~a~~~y~k~Gf~~~~~~~~~~--~g~~~~~~~~~~ 140 (143)
T 3bln_A 97 ------KI-FS-STNESNESMQKVFNANGFIRSGIVENLD--EGDPEIIFYTKK 140 (143)
T ss_dssp ------EE-EE-EEETTCHHHHHHHHHTTCEEEEEECSSS--TTCCEEEEEEEC
T ss_pred ------Ce-EE-EEcccCHHHHHHHHHCCCeEeeEEeccc--CCCceEEEEccc
Confidence 00 11 2233478899999999999998887665 477777777643
No 35
>2g3a_A Acetyltransferase; structural genomics, PSI, protein structu initiative, midwest center for structural genomics, MCSG; 1.90A {Agrobacterium tumefaciens str} SCOP: d.108.1.1
Probab=98.45 E-value=6.2e-07 Score=82.33 Aligned_cols=78 Identities=8% Similarity=-0.020 Sum_probs=59.7
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccc
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHL 494 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l 494 (835)
.+.|..++|+|+|||+|||+++++.+.++....
T Consensus 75 ~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~----------------------------------------------- 107 (152)
T 2g3a_A 75 WLYVQLLFVPEAMRGQGIAPKLLAMAEEEARKR----------------------------------------------- 107 (152)
T ss_dssp EEEEEEEECCGGGCSSSHHHHHHHHHHHHHHHT-----------------------------------------------
T ss_pred EEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC-----------------------------------------------
Confidence 467889999999999999999999999876421
Q ss_pred cccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccC
Q 003262 495 RERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPL 548 (835)
Q Consensus 495 ~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L 548 (835)
++..+-+.-. +....+||+|+||.++.....+ ..|...+.|.|+|
T Consensus 108 ------g~~~i~l~~~-n~~a~~~y~k~GF~~~~~~~~~--~~~~~~~~m~k~L 152 (152)
T 2g3a_A 108 ------GCMGAYIDTM-NPDALRTYERYGFTKIGSLGPL--SSGQSITWLEKRF 152 (152)
T ss_dssp ------TCCEEEEEES-CHHHHHHHHHHTCEEEEEECCC--TTSCCEEEEEEEC
T ss_pred ------CCCEEEEEec-CccHHHHHHHCCCEEeeeccCC--CCCcEEEEEEecC
Confidence 1112222212 6889999999999999887665 3578888888865
No 36
>2atr_A Acetyltransferase, GNAT family; MCSG, structural genomics, PSI, protein structure INIT midwest center for structural genomics; 2.01A {Streptococcus pneumoniae} SCOP: d.108.1.1
Probab=98.45 E-value=1.9e-06 Score=76.75 Aligned_cols=79 Identities=16% Similarity=0.284 Sum_probs=51.6
Q ss_pred HHHHHHHhcc---cCCChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCc
Q 003262 320 RMMALYVSSH---YKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQ 396 (835)
Q Consensus 320 ~~~aLlV~AH---YkNsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdL 396 (835)
.++.|+..+. |..++.++....+.+ ..+|++.. + .+++|++.+...
T Consensus 14 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~---~~~vG~~~~~~~---------------------- 62 (138)
T 2atr_A 14 DVLHLYQAVGWTNYTHQTEMLEQALSHS-LVIYLALD-----G---DAVVGLIRLVGD---------------------- 62 (138)
T ss_dssp HHHHHHHTTCCCC-----CHHHHHHTSC-SEEEEEEE-----T---TEEEEEEEEEEC----------------------
T ss_pred HHHHHHHHcCCCchhhhHHHHHHhcCCC-eEEEEEEE-----C---CeeEEEEEEEeC----------------------
Confidence 4445555443 345778887777644 55566541 1 368998876421
Q ss_pred hhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHH
Q 003262 397 IPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYY 444 (835)
Q Consensus 397 IPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~ 444 (835)
.-..+.|..++|+|+|||+|||+++++.+.+++
T Consensus 63 ---------------~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~ 95 (138)
T 2atr_A 63 ---------------GFSSVFVQDLIVLPSYQRQGIGSSLMKEALGNF 95 (138)
T ss_dssp ---------------SSSEEEEEEEEECTTSCSSSHHHHHHHHHHGGG
T ss_pred ---------------CCCeEEEEEEEEchhhcCCCHHHHHHHHHHHHH
Confidence 113578999999999999999999999988765
No 37
>4evy_A Aminoglycoside N(6')-acetyltransferase type 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: TOY; 1.77A {Acinetobacter haemolyticus} PDB: 4f0y_A 4e8o_A
Probab=98.45 E-value=3e-06 Score=79.10 Aligned_cols=90 Identities=8% Similarity=0.090 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcccCCChhH----HHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCC
Q 003262 318 LQRMMALYVSSHYKNSPND----LQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPS 393 (835)
Q Consensus 318 Lq~~~aLlV~AHYkNsPnD----LqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~ 393 (835)
+..++.|+.. .|..+|++ +..+.+.+...+||+.. + .+++|.+.+...-...
T Consensus 32 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~---~~~vG~~~~~~~~~~~--------------- 87 (166)
T 4evy_A 32 LKDWLELRNK-LWSDSEASHLQEMHQLLAEKYALQLLAYS-----D---HQAIAMLEASIRFEYV--------------- 87 (166)
T ss_dssp HHHHHHHHHH-HSCCCHHHHHHHHHHHHTCTTEEEEEEEE-----T---TEEEEEEEEEEECSCC---------------
T ss_pred HHHHHHHHHH-HhcCCchHHHHHHHHHhcCCCceEEEEEE-----C---CeEEEEEEEEeecccc---------------
Confidence 4445555543 36666655 66667778888888862 1 3689988775411000
Q ss_pred CCchhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 394 GDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 394 GdLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.....-..+.|..|+|+|+|||+|||+++++.+.+++.
T Consensus 88 --------------~~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~ 125 (166)
T 4evy_A 88 --------------NGTETSPVGFLEGIYVLPAHRRSGVATMLIRQAEVWAK 125 (166)
T ss_dssp --------------TTCSSSSEEEEEEEEECGGGTTSSHHHHHHHHHHHHHH
T ss_pred --------------cCCCCCCeEEEEEEEEChhhhcCCHHHHHHHHHHHHHH
Confidence 00012345789999999999999999999999998874
No 38
>2pdo_A Acetyltransferase YPEA; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: MSE; 2.00A {Shigella flexneri 2A}
Probab=98.44 E-value=2.8e-06 Score=77.99 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=27.0
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
+.|..|+|||+|||+|||+++|+.+.+++.
T Consensus 70 ~~i~~l~V~p~~rg~GiG~~Ll~~~~~~~~ 99 (144)
T 2pdo_A 70 GSAYYLGVHPEFRGRGIANALLNRLEKKLI 99 (144)
T ss_dssp EEEEEEEECGGGTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEEECccccCCcHHHHHHHHHHHHHH
Confidence 468899999999999999999999988764
No 39
>4h89_A GCN5-related N-acetyltransferase; N-acyltransferase superfamily, structural genomics, PSI-BIOL midwest center for structural genomics, MCSG; 1.37A {Kribbella flavida}
Probab=98.43 E-value=7.5e-07 Score=84.89 Aligned_cols=80 Identities=11% Similarity=0.142 Sum_probs=58.8
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccc
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLR 495 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~ 495 (835)
+.+..|+|+|+|||+|||+++++.+.++....
T Consensus 89 ~~~~~~~V~p~~rg~GiG~~Ll~~~~~~a~~~------------------------------------------------ 120 (173)
T 4h89_A 89 VASASFMVAAAARGRGVGRALCQDMIDWAGRE------------------------------------------------ 120 (173)
T ss_dssp EEEEEEEECGGGTTSSHHHHHHHHHHHHHHHT------------------------------------------------
T ss_pred EEEEeeEEEEeeccchHHHHHHHHHHHHHHHC------------------------------------------------
Confidence 45678999999999999999999999886421
Q ss_pred ccCCCCcc--eEEEecCCCHHHHHHHHHCCCeEEEeeecc-cCCCCC--ceEEEEccC
Q 003262 496 ERQPEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNA-NAVTGE--HTCMVLKPL 548 (835)
Q Consensus 496 e~~~~~lD--ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~-ne~TGE--hS~IMlr~L 548 (835)
++. .+.+.+.-+...++||+|+||..+...... ..-.|. ...+|-|+|
T Consensus 121 -----g~~~~~l~~~~~~N~~A~~~y~k~GF~~~G~~~~~~~~~~~~~~D~~~M~k~L 173 (173)
T 4h89_A 121 -----GFRAIQFNAVVETNTVAVKLWQSLGFRVIGTVPEAFHHPTHGYVGLHVMHRPL 173 (173)
T ss_dssp -----TCSEEEEEEEETTCHHHHHHHHHTTCEEEEEEEEEEEETTTEEEEEEEEEEEC
T ss_pred -----CCcEEEEeeecccCHHHHHHHHHCCCEEEEEEccceECCCCCEeEEEEEECCC
Confidence 111 123344558999999999999999765443 223443 468999986
No 40
>3d8p_A Acetyltransferase of GNAT family; NP_373092.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 2.20A {Staphylococcus aureus subsp}
Probab=98.43 E-value=8.4e-06 Score=74.20 Aligned_cols=65 Identities=6% Similarity=0.090 Sum_probs=50.1
Q ss_pred HHHHhhcCCCceEEEEecCCcccCCCCCC-eEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCCCCCc
Q 003262 336 DLQLMADAPAHHLFVLLGPVDESKNQLPD-ILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLS 414 (835)
Q Consensus 336 DLqlL~DaPah~lfvL~~p~~~~~~~lp~-il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~ls 414 (835)
++....+.|...+|++.. + .+ ++|.+.+..... .
T Consensus 43 ~~~~~~~~~~~~~~v~~~-----~---~~~~vG~~~~~~~~~-------------------------------------~ 77 (163)
T 3d8p_A 43 NIEHNYLNSGGQFWLAIN-----N---HQNIVGTIGLIRLDN-------------------------------------N 77 (163)
T ss_dssp CHHHHTTTTTCEEEEEEC-----T---TCCEEEEEEEEECST-------------------------------------T
T ss_pred HHHHHHhcCCceEEEEEe-----C---CCeEEEEEEEEecCC-------------------------------------C
Confidence 566666677788887762 1 25 899887764320 3
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.+.|..++|+|+|||+|||+++++.+.++..
T Consensus 78 ~~~i~~~~v~p~~rg~Gig~~ll~~~~~~a~ 108 (163)
T 3d8p_A 78 MSALKKMFVDKGYRNLKIGKKLLDKVIMTCK 108 (163)
T ss_dssp EEEEEEEEECGGGTTTTHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEChhhccCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998874
No 41
>1qst_A TGCN5 histone acetyl transferase; GCN5-related N-acetyltransferase, COA binding protein; HET: EPE; 1.70A {Tetrahymena thermophila} SCOP: d.108.1.1 PDB: 1m1d_A* 1pu9_A* 1pua_A* 5gcn_A* 1qsr_A* 1q2d_A* 1q2c_A* 1qsn_A*
Probab=98.42 E-value=1.8e-06 Score=80.53 Aligned_cols=81 Identities=12% Similarity=0.165 Sum_probs=59.1
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccc
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHL 494 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l 494 (835)
.+.|..++|+|+|||+|||+++++.+.++....
T Consensus 72 ~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~~----------------------------------------------- 104 (160)
T 1qst_A 72 FAEVAFLAVTANEQVRGYGTRLMNKFKDHMQKQ----------------------------------------------- 104 (160)
T ss_dssp EEEEEEEEECGGGCSSSHHHHHHHHHHHHHHHT-----------------------------------------------
T ss_pred eEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC-----------------------------------------------
Confidence 357899999999999999999999998876421
Q ss_pred cccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeec----ccCCCCCceEEEEccCCc
Q 003262 495 RERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQN----ANAVTGEHTCMVLKPLHS 550 (835)
Q Consensus 495 ~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~----~ne~TGEhS~IMlr~L~~ 550 (835)
++..+-| +.-+ ...+||+|+||.++..... .....++++.+|-+.|..
T Consensus 105 ------g~~~l~~-~~~n-~a~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~ 156 (160)
T 1qst_A 105 ------NIEYLLT-YADN-FAIGYFKKQGFTKEHRMPQEKWKGYIKDYDGGTLMECYIHP 156 (160)
T ss_dssp ------TCCEEEE-EECS-SSHHHHHHTTCBSSCSSCHHHHTTTSCCCSSSEEEEEECCT
T ss_pred ------CCcEEEE-eCcc-hhHHHHHHCCCEEeeeeccccceeEEecCCCceEEeeeccc
Confidence 1122222 2335 7899999999998864441 111246889999999875
No 42
>2jdc_A Glyphosate N-acetyltransferase; GNAT; HET: CAO; 1.6A {Bacillus licheniformis} SCOP: d.108.1.1 PDB: 2bsw_A* 2jdd_A*
Probab=98.41 E-value=1.1e-06 Score=80.47 Aligned_cols=77 Identities=9% Similarity=0.069 Sum_probs=58.8
Q ss_pred CcccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccc
Q 003262 413 LSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLV 492 (835)
Q Consensus 413 lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~ 492 (835)
-..+.|.+++|+|+|||+|||+++++.+.++....
T Consensus 67 ~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~~~~~--------------------------------------------- 101 (146)
T 2jdc_A 67 QKQYQLRGMATLEGYREQKAGSSLIKHAEEILRKR--------------------------------------------- 101 (146)
T ss_dssp SSEEEEEEEEECTTSTTSSHHHHHHHHHHHHHHHT---------------------------------------------
T ss_pred CceEEEEEEEECHHHcccCHHHHHHHHHHHHHHHc---------------------------------------------
Confidence 34689999999999999999999999998876421
Q ss_pred cccccCCCCcc--eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCC-ceEEEEccCC
Q 003262 493 HLRERQPEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGE-HTCMVLKPLH 549 (835)
Q Consensus 493 ~l~e~~~~~lD--ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGE-hS~IMlr~L~ 549 (835)
++. ++.+ +....+||+|+||.++.....+ .|. ..++|.|.|+
T Consensus 102 --------g~~~i~l~~----~~~a~~~y~~~GF~~~~~~~~~---~~~~~~~~m~k~l~ 146 (146)
T 2jdc_A 102 --------GADLLWCNA----RTSASGYYKKLGFSEQGEVFDT---PPVGPHILMYKRIT 146 (146)
T ss_dssp --------TCCEEEEEE----EGGGHHHHHHTTCEEEEEEEEC---TTSCEEEEEEEECC
T ss_pred --------CCcEEEEEc----cccHHHHHHHcCCEEecccccC---CCCCCeEEEEEecC
Confidence 111 1222 3688999999999999876554 344 7788988874
No 43
>2fia_A Acetyltransferase; structural genomics, PSI, protein structu initiative, midwest center for structural genomics, MCSG; 2.60A {Enterococcus faecalis} SCOP: d.108.1.1
Probab=98.39 E-value=1.4e-06 Score=79.07 Aligned_cols=84 Identities=20% Similarity=0.232 Sum_probs=61.5
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccc
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLR 495 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~ 495 (835)
..|..++|+|+|||+|||+++++.+.+++.....
T Consensus 76 ~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g~---------------------------------------------- 109 (162)
T 2fia_A 76 VWLKRFATSPNYIAKGYGSLLFHELEKRAVWEGR---------------------------------------------- 109 (162)
T ss_dssp EEEEEEEECGGGTTTTHHHHHHHHHHHHHHTTTC----------------------------------------------
T ss_pred eEEEEEEEcccccCCCHHHHHHHHHHHHHHHCCC----------------------------------------------
Confidence 3499999999999999999999999988742110
Q ss_pred ccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCCcc
Q 003262 496 ERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHSE 551 (835)
Q Consensus 496 e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~~~ 551 (835)
.-=++.| +--+....+||+|+||.++.....++..-|...++|.|.|+..
T Consensus 110 -----~~i~~~~-~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~~~~~~~m~k~l~~~ 159 (162)
T 2fia_A 110 -----RKMYAQT-NHTNHRMIRFFESKGFTKIHESLQMNRLDFGSFYLYVKELENQ 159 (162)
T ss_dssp -----CEEEEEE-ETTCHHHHHHHHHTTCEEEEEECCTTCGGGCCEEEEEEECC--
T ss_pred -----CEEEEEe-cCCCHHHHHHHHHCCCEEEeeEeeccccCccceEEEEEEcCCc
Confidence 0002222 2236899999999999999888776321177889999999753
No 44
>2dxq_A AGR_C_4057P, acetyltransferase; structural genomics, PSI-2, protein struc initiative, midwest center for structural genomics, MCSG; 1.80A {Agrobacterium tumefaciens str}
Probab=98.39 E-value=5.9e-06 Score=76.48 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=48.5
Q ss_pred HHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCCCCCcccE
Q 003262 338 QLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGAR 417 (835)
Q Consensus 338 qlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~lsgaR 417 (835)
..+.+.|.+++||+.. + .+++|.+.+......... ....+.
T Consensus 43 ~~~~~~~~~~~~v~~~-----~---~~~vG~~~~~~~~~~~~~-------------------------------~~~~~~ 83 (150)
T 2dxq_A 43 AAMLAQPGLTIFVATE-----N---GKPVATATLLIVPNLTRA-------------------------------ARPYAF 83 (150)
T ss_dssp HHHHHSTTEEEEEEEE-----T---TEEEEEEEEEEECCSHHH-------------------------------HCCEEE
T ss_pred HHHhcCCCceEEEEec-----C---CEEEEEEEEEEecccccC-------------------------------CCceEE
Confidence 3445668888887752 1 368998877643221100 012367
Q ss_pred EEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 418 IVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 418 IVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
|.+|+|+|+|||+|||+++|+.+.++..
T Consensus 84 i~~l~V~p~~rg~GiG~~Ll~~~~~~a~ 111 (150)
T 2dxq_A 84 IENVVTLEARRGRGYGRTVVRHAIETAF 111 (150)
T ss_dssp EEEEECCGGGTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECHHHhCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 45
>2ree_A CURA; GNAT, S-acetyltransferase, decarboxylase, polyketid synthase, loading, phosphopantetheine, transferase, lyase; HET: SO4; 1.95A {Lyngbya majuscula} PDB: 2ref_A*
Probab=98.38 E-value=8.1e-07 Score=87.60 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=65.0
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHhcc-c-ccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccc
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQ-L-TTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLL 491 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~-~-~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl 491 (835)
..+.|..|+|||+|||+|||+++|+.+.++.... . ..+.-. ..+.+.. .. ..++.
T Consensus 97 ~~~~i~~l~V~p~~rg~GiG~~Ll~~~~~~a~~~~g~~~i~~~----------l~~~~~~----------~~-~~~~~-- 153 (224)
T 2ree_A 97 VVVQLLAVNILPELQNQGLGDRLLEFMLQYCAQISGVEKVVAV----------TLCRNYP----------DY-SPMPM-- 153 (224)
T ss_dssp SEEEEEEEEECGGGCSSSHHHHHHHHHHHHHTTSTTCCEEEEE----------ECCSSGG----------GT-TTSCH--
T ss_pred CeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHhcCccEEEEe----------ccCCccc----------cC-CCCCH--
Confidence 4578999999999999999999999999987532 1 111000 0000000 00 00000
Q ss_pred ccccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCC---CCCceEEEEccCCcc
Q 003262 492 VHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAV---TGEHTCMVLKPLHSE 551 (835)
Q Consensus 492 ~~l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~---TGEhS~IMlr~L~~~ 551 (835)
. ..++++-.+--.+...++||+|+||.++.....+... .+++.++|.+.+...
T Consensus 154 ---~----~y~~~~~~~g~~N~~a~~fY~k~GF~~~g~~~~y~~~~~~~~~~~~~m~~~l~~~ 209 (224)
T 2ree_A 154 ---A----EYIHQKNESGLLVDPLLRFHQIHGAKIEKLLPGYRPKDWENQTCGVLVSYDIQHR 209 (224)
T ss_dssp ---H----HHTTCBCTTSCBSSHHHHHHHHTTCEEEEEETTSCTTCGGGTTCEEEEEECCTTC
T ss_pred ---H----HHHHHHhcCCcccCcceeeeecCCeEEEEEccccccccccCCCceEEEEEecccc
Confidence 0 0001100000014679999999999999998887643 347899999998754
No 46
>2qec_A Histone acetyltransferase HPA2 and related acetyltransferases; NP_600742.1, acetyltransferase (GNAT) family; 1.90A {Corynebacterium glutamicum atcc 13032}
Probab=98.37 E-value=2.2e-06 Score=80.54 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=62.0
Q ss_pred CCCcccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcc
Q 003262 411 PSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPL 490 (835)
Q Consensus 411 ~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppL 490 (835)
+.-..+.|..|+|||+|||+|||+++++.+.+++..+
T Consensus 121 ~~~~~~~l~~l~V~p~~rg~Gig~~Ll~~~~~~a~~~------------------------------------------- 157 (204)
T 2qec_A 121 PKFPHWYLYTVATSSSARGTGVGSALLNHGIARAGDE------------------------------------------- 157 (204)
T ss_dssp CSSCCEEEEEEEECGGGTTSSHHHHHHHHHHHHHTTS-------------------------------------------
T ss_pred CCCCeEEEEEEEEChhhcCCCHHHHHHHHHHHHhhhC-------------------------------------------
Confidence 3455678999999999999999999999998876421
Q ss_pred cccccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCCc
Q 003262 491 LVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHS 550 (835)
Q Consensus 491 l~~l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~~ 550 (835)
.+.+. .-+....+||+|+||.++......+ .|.+.++|.|++..
T Consensus 158 -------------~~~v~-~~n~~a~~~y~k~GF~~~~~~~~~~--~~~~~~~m~~~~~~ 201 (204)
T 2qec_A 158 -------------AIYLE-ATSTRAAQLYNRLGFVPLGYIPSDD--DGTPELAMWKPPAM 201 (204)
T ss_dssp -------------CEEEE-ESSHHHHHHHHHTTCEEEEEECCSS--CSSCEEEEEECCCC
T ss_pred -------------CeEEE-ecCccchHHHHhcCCeEeEEEEcCC--CCeEEEEEEeCCCC
Confidence 11121 1268899999999999998776433 35668999998764
No 47
>1ygh_A ADA4, protein (transcriptional activator GCN5); transcriptional regulation, histone acetylation; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1
Probab=98.37 E-value=4.2e-06 Score=79.33 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=60.0
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccc
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHL 494 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l 494 (835)
...|..|+|+|+|||+|||+++++.+.++....
T Consensus 73 ~~~i~~l~V~p~~rg~Gig~~ll~~~~~~a~~~----------------------------------------------- 105 (164)
T 1ygh_A 73 FAEIVFCAISSTEQVRGYGAHLMNHLKDYVRNT----------------------------------------------- 105 (164)
T ss_dssp EEEEEEEEECTTCCCTTHHHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred ceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhc-----------------------------------------------
Confidence 467889999999999999999999999876420
Q ss_pred cccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeec----ccCCCCCceEEEEccCCc
Q 003262 495 RERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQN----ANAVTGEHTCMVLKPLHS 550 (835)
Q Consensus 495 ~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~----~ne~TGEhS~IMlr~L~~ 550 (835)
.++.++.|.- -+ ...+||+|+||.++..... ......++..+|-+.|..
T Consensus 106 -----~g~~~l~v~~-~n-~a~~~y~k~GF~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~ 158 (164)
T 1ygh_A 106 -----SNIKYFLTYA-DN-YAIGYFKKQGFTKEITLDKSIWMGYIKDYEGGTLMQCSMLP 158 (164)
T ss_dssp -----SCCCEEEEEE-CG-GGHHHHHHTTCBSSCCSCHHHHBTTBCCTTCCEEEEEECCC
T ss_pred -----CCceEEEEec-CC-hHHHHHHHcCCEecceeccceEEEEEEEecCeEEEEeeccc
Confidence 0112444432 25 8899999999998876544 122235778999999864
No 48
>3f8k_A Protein acetyltransferase; GCN5-related N-acetyltransferase; HET: COA; 1.84A {Sulfolobus solfataricus P2}
Probab=98.35 E-value=2e-06 Score=78.84 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=41.6
Q ss_pred CCChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCC
Q 003262 331 KNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVF 410 (835)
Q Consensus 331 kNsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f 410 (835)
..++.++..+.+.+.+..|++.. + .+++|++.+.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~v~~~-----~---~~~vG~~~~~-------------------------------------- 72 (160)
T 3f8k_A 39 RITEEDAKKIASNEDHVTFLAEV-----D---GKVVGEASLH-------------------------------------- 72 (160)
T ss_dssp HTC-----------CEEEEEEEE-----T---TEEEEEEEEE--------------------------------------
T ss_pred ccCHHHHHHHhccCCceEEEEEE-----C---CeEEEEEEee--------------------------------------
Confidence 35667776677778887877762 1 3688988777
Q ss_pred CCCcccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 411 PSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 411 ~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
. .+.| .|+|+|+|||+|||+++++.+.+++.
T Consensus 73 -~--~~~~-~~~v~p~~rg~Gig~~ll~~~~~~~~ 103 (160)
T 3f8k_A 73 -K--DGEF-SLVVHRNYRTLGIGTLLVKTLIEEAK 103 (160)
T ss_dssp -T--TSBE-EEEECGGGTTSSHHHHHHHHHHHHHH
T ss_pred -c--ceEE-EEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 1 2234 79999999999999999999998874
No 49
>2fe7_A Probable N-acetyltransferase; structural genomics, pseudomonas aerugi PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa ucbpp-pa14} SCOP: d.108.1.1
Probab=98.32 E-value=6e-06 Score=75.43 Aligned_cols=76 Identities=9% Similarity=0.079 Sum_probs=51.2
Q ss_pred cCCChhHHHHhh--cCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhcc
Q 003262 330 YKNSPNDLQLMA--DAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRD 407 (835)
Q Consensus 330 YkNsPnDLqlL~--DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d 407 (835)
+..++.++.... +.|....|++.. + .+++|++.+.....
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~v~~~-----~---~~~vG~~~~~~~~~------------------------------- 81 (166)
T 2fe7_A 41 VVTDVEGIRRSLFAEGSPTRALMCLS-----E---GRPIGYAVFFYSYS------------------------------- 81 (166)
T ss_dssp CCCCHHHHHHHHTSTTCSEEEEEEEE-----T---TEEEEEEEEEEEEE-------------------------------
T ss_pred CCccHHHHHHHhhcCCCCceEEEEEe-----C---CeEEEEEEEEeccC-------------------------------
Confidence 345667776543 567777777752 1 36888887764210
Q ss_pred CCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 408 AVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 408 ~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.+..-..+.|..++|+|+|||+|||+++++.+.+++.
T Consensus 82 -~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~ 118 (166)
T 2fe7_A 82 -TWLGRNGIYLEDLYVTPEYRGVGAGRRLLRELAREAV 118 (166)
T ss_dssp -TTTTEEEEEEEEEEECGGGCC--HHHHHHHHHHHHHH
T ss_pred -CcccCCcEEEEEEEECccccCccHHHHHHHHHHHHHH
Confidence 0112234789999999999999999999999998864
No 50
>2ae6_A Acetyltransferase, GNAT family; GCN5-related N-acetyltransferase (GNAT), alpha-beta, structu genomics, PSI, protein structure initiative; HET: GOL; 2.19A {Enterococcus faecalis} SCOP: d.108.1.1
Probab=98.32 E-value=1.3e-06 Score=82.04 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=57.8
Q ss_pred EEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccccc
Q 003262 418 IVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRER 497 (835)
Q Consensus 418 IVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~ 497 (835)
+.+|+|+|+|||+|||+++|+.+.++......
T Consensus 84 ~~~l~V~p~~rg~GiG~~ll~~~~~~a~~~g~------------------------------------------------ 115 (166)
T 2ae6_A 84 LLSIGVSPDFQDQGIGGSLLSYIKDMAEISGI------------------------------------------------ 115 (166)
T ss_dssp EEEEEECGGGTTSSHHHHHHHHHHHHHHHHTC------------------------------------------------
T ss_pred EEEEEECHHHhCCCHHHHHHHHHHHHHHHCCC------------------------------------------------
Confidence 45999999999999999999999987642110
Q ss_pred CCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCC--CceEEEEccCC
Q 003262 498 QPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTG--EHTCMVLKPLH 549 (835)
Q Consensus 498 ~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TG--EhS~IMlr~L~ 549 (835)
.. =++.| +--+....+||+|+||..+..........| .+.++|-+.++
T Consensus 116 --~~-i~l~v-~~~N~~A~~~Yek~GF~~~~~~~~~~~~~g~~~d~~~m~~~~~ 165 (166)
T 2ae6_A 116 --HK-LSLRV-MATNQEAIRFYEKHGFVQEAHFKEEFYINGHYCDDYQYAYFIE 165 (166)
T ss_dssp --CE-EEEEE-ETTCHHHHHHHHHTTCEEEEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred --CE-EEEEe-ecCCHHHHHHHHHcCCEEeeEEcceEEECCEEchhhhhhHHhc
Confidence 00 01222 233789999999999999988777554567 46777877653
No 51
>3mgd_A Predicted acetyltransferase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; HET: ACO; 1.90A {Clostridium acetobutylicum}
Probab=98.32 E-value=2.2e-06 Score=77.82 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=29.0
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|..|+|||+|||+|||+++++.+.+++.
T Consensus 83 ~~~~i~~l~V~p~~rg~Gig~~Ll~~~~~~~~ 114 (157)
T 3mgd_A 83 RKGYITNMYTEPTSRGNGIATGMLDRLVNEAK 114 (157)
T ss_dssp EEEEEEEEEECGGGTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEEEEEcHHHcCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999998874
No 52
>3i3g_A N-acetyltransferase; malaria, structural genomics, structural genomics consortium, SGC,; 1.86A {Trypanosoma brucei} PDB: 3fb3_A
Probab=98.31 E-value=4.9e-06 Score=76.43 Aligned_cols=90 Identities=16% Similarity=0.107 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcccC--CChhHHHH----hhcCC-CceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcC
Q 003262 317 FLQRMMALYVSSHYK--NSPNDLQL----MADAP-AHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEG 389 (835)
Q Consensus 317 fLq~~~aLlV~AHYk--NsPnDLql----L~DaP-ah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G 389 (835)
=+..++.|+-.+... .++.+++. +.+.+ ...+|++. .+ .+++|.+.+........
T Consensus 30 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----~~---~~~vG~~~~~~~~~~~~---------- 91 (161)
T 3i3g_A 30 DLSSHLELLGHLTEAPPLSGVELANIADMRRRAGIVTKVFCHQ-----PT---GRIVGSASLMIQPKFTR---------- 91 (161)
T ss_dssp GHHHHHHHHTTTSCCCCCCHHHHHHHHHHHHHTTCEEEEEEET-----TT---TEEEEEEEEEEECCSSG----------
T ss_pred hHHHHHHHHHHhccCCCCCHHHHHHHHHHHhhcCCceEEEEEE-----cC---CCeEEEEEEEeccCCCC----------
Confidence 344556665554443 45666653 33344 44555553 12 37899888876533210
Q ss_pred CCCCCCchhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 390 HQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 390 ~Rp~GdLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..-..+.|..|+|+|+|||+|||+++++.+.+++.
T Consensus 92 ---------------------~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~ 126 (161)
T 3i3g_A 92 ---------------------GGRAVGHIEDVVVDPSYRGAGLGKALIMDLCEISR 126 (161)
T ss_dssp ---------------------GGCCEEEEEEEEECGGGTTTTHHHHHHHHHHHHHH
T ss_pred ---------------------CCccEEEEEEEEEcHHHcccCHHHHHHHHHHHHHH
Confidence 01244688899999999999999999999998874
No 53
>1vkc_A Putative acetyl transferase; structural genomics, pyrococcus furiosus southeast collaboratory for structural genomics, secsg; 1.89A {Pyrococcus furiosus} SCOP: d.108.1.1
Probab=98.30 E-value=3.9e-06 Score=77.64 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=51.4
Q ss_pred hHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCCCCCc
Q 003262 335 NDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLS 414 (835)
Q Consensus 335 nDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~ls 414 (835)
+.++.+.+.+....|++.. ++ .+++|.+.+..... ....-.
T Consensus 50 ~~~~~~~~~~~~~~~v~~~----~~---~~~vG~~~~~~~~~--------------------------------~~~~~~ 90 (158)
T 1vkc_A 50 ELFESLLSQGEHKFFVALN----ER---SELLGHVWICITLD--------------------------------TVDYVK 90 (158)
T ss_dssp HHHHHHHHSSEEEEEEEEE----TT---CCEEEEEEEEEEEC--------------------------------TTTCSE
T ss_pred HHHHHHhcCCCcEEEEEEc----CC---CcEEEEEEEEEecc--------------------------------ccCCCC
Confidence 3455556667777777762 10 26899887765322 112234
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.+.|..++|+|+|||+|||+++++.+.+++.
T Consensus 91 ~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~ 121 (158)
T 1vkc_A 91 IAYIYDIEVVKWARGLGIGSALLRKAEEWAK 121 (158)
T ss_dssp EEEEEEEEECGGGTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECHHHhCCCHHHHHHHHHHHHHH
Confidence 5788999999999999999999999998874
No 54
>2i79_A Acetyltransferase, GNAT family; acetyl coenzyme *A, structur genomics, PSI-2, protein structure initiative; HET: ACO; 2.10A {Streptococcus pneumoniae}
Probab=98.30 E-value=1.8e-05 Score=74.38 Aligned_cols=77 Identities=17% Similarity=0.128 Sum_probs=55.6
Q ss_pred EEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccC
Q 003262 419 VRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQ 498 (835)
Q Consensus 419 VRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~ 498 (835)
+.|+|+|+|||+|||++|++.+.++...+.
T Consensus 90 ~~~~v~~~~~g~Gig~~ll~~~~~~a~~~~-------------------------------------------------- 119 (172)
T 2i79_A 90 LFIVIGKRYWNNGLGSLLLEEAIEWAQASG-------------------------------------------------- 119 (172)
T ss_dssp EEEEECGGGTTSSHHHHHHHHHHHHHHHTS--------------------------------------------------
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHhcC--------------------------------------------------
Confidence 479999999999999999999999874221
Q ss_pred CCCcc--eEEEecCCCHHHHHHHHHCCCeEEEeee-cccCCCCC--ceEEEEccC
Q 003262 499 PEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQ-NANAVTGE--HTCMVLKPL 548 (835)
Q Consensus 499 ~~~lD--ylGvSFGlT~~Ll~FWkk~GF~pVylrq-~~ne~TGE--hS~IMlr~L 548 (835)
+++ ++.| +--+...++||+|+||..+.... ......|+ +.++|-+.+
T Consensus 120 --~~~~i~l~v-~~~N~~A~~~yek~GF~~~g~~~~~~~~~~g~~~d~~~m~~~~ 171 (172)
T 2i79_A 120 --ILRRLQLTV-QTRNQAAVHLYQKHGFVIEGSQERGAYIEEGKFIDVYLMGKLI 171 (172)
T ss_dssp --SCCEEEEEE-ETTCHHHHHHHHHTTCEEEEEEEEEEEETTTEEEEEEEEEEEC
T ss_pred --CeEEEEEEE-ECCCHHHHHHHHHCCCEEEeEEecceEecCCeEeeeEEEEEec
Confidence 011 1222 22378999999999999998876 34445675 567776543
No 55
>4ag7_A Glucosamine-6-phosphate N-acetyltransferase; HET: COA; 1.55A {Caenorhabditis elegans} PDB: 4ag9_A*
Probab=98.28 E-value=2.9e-06 Score=77.93 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=47.7
Q ss_pred CCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCCCCCcccEEEEEee
Q 003262 344 PAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIAT 423 (835)
Q Consensus 344 Pah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~lsgaRIVRIAv 423 (835)
|.+.++|+... .+ .+++|.+.+..+...... .-..+.|..|+|
T Consensus 66 ~~~~~~v~~~~---~~---~~ivG~~~~~~~~~~~~~-------------------------------~~~~~~i~~~~V 108 (165)
T 4ag7_A 66 PNYHIVVIEDS---NS---QKVVASASLVVEMKFIHG-------------------------------AGSRGRVEDVVV 108 (165)
T ss_dssp SCCEEEEEEET---TT---TEEEEEEEEEEEECSHHH-------------------------------HCEEEEEEEEEE
T ss_pred CceEEEEEEeC---CC---CeEEEEEEEEecccccCC-------------------------------CCcEEEEEEEEE
Confidence 78888887621 11 378999888764332211 123478999999
Q ss_pred CcccccCChHHHHHHHHHHHHh
Q 003262 424 HPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 424 hPd~q~mGyGsraL~~L~~~~~ 445 (835)
+|+|||+|||+++++.+.+++.
T Consensus 109 ~p~~rg~Gig~~Ll~~~~~~a~ 130 (165)
T 4ag7_A 109 DTEMRRQKLGAVLLKTLVSLGK 130 (165)
T ss_dssp CGGGTTSSHHHHHHHHHHHHHH
T ss_pred CHHhcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 56
>3gy9_A GCN5-related N-acetyltransferase; YP_001815201.1, putative acetyltransferase; HET: MSE COA SO4; 1.52A {Exiguobacterium sibiricum 255-15} PDB: 3gya_A*
Probab=98.28 E-value=4.3e-06 Score=75.94 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=28.8
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|..|+|+|+|||+|||+++++.+.+++.
T Consensus 75 ~~~~i~~l~V~p~~rg~Gig~~Ll~~~~~~a~ 106 (150)
T 3gy9_A 75 RTGRIRHVYVLPEARSHGIGTALLEKIMSEAF 106 (150)
T ss_dssp TEEEEEEEEECGGGTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEEEEECHhhcCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999998764
No 57
>4fd4_A Arylalkylamine N-acetyltransferase like 5B; GNAT; 1.95A {Aedes aegypti}
Probab=98.28 E-value=1.8e-05 Score=76.10 Aligned_cols=67 Identities=9% Similarity=0.014 Sum_probs=51.0
Q ss_pred CCcccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccc
Q 003262 412 SLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLL 491 (835)
Q Consensus 412 ~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl 491 (835)
.-..+.|..|+|+|+|||+|||+++++.+.++....
T Consensus 123 ~~~~~~l~~l~V~p~~rg~Gig~~Ll~~~~~~a~~~-------------------------------------------- 158 (217)
T 4fd4_A 123 LEKAYHVHILAVDPTYRGHSLGQRLLQFQMDLSKKL-------------------------------------------- 158 (217)
T ss_dssp CSCEEEEEEEEECTTSCSSCHHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred CCceEEEEEEEECHHHccCCHHHHHHHHHHHHHHHc--------------------------------------------
Confidence 345688999999999999999999999998876421
Q ss_pred ccccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeec
Q 003262 492 VHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQN 532 (835)
Q Consensus 492 ~~l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~ 532 (835)
++..+-+... +....+||+|+||..+.-..-
T Consensus 159 ---------g~~~i~~~~~-n~~a~~~Y~k~GF~~~~~~~~ 189 (217)
T 4fd4_A 159 ---------GFKAISGDFT-SVFSVKLAEKLGMECISQLAL 189 (217)
T ss_dssp ---------TCSEEEEEEC-SHHHHHHHHHTTCEEEEEEEG
T ss_pred ---------CCCEEEEEeC-CHHHHHHHHHCCCeEEEeEeH
Confidence 1222323222 799999999999999986543
No 58
>1y7r_A Hypothetical protein SA2161; structural genomics, protein structure initiative, PSI, midwest center for structural genomics; 1.70A {Staphylococcus aureus} SCOP: d.108.1.1
Probab=98.28 E-value=5.3e-06 Score=74.56 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=54.6
Q ss_pred HHHHHHHHhcccC-CChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCch
Q 003262 319 QRMMALYVSSHYK-NSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQI 397 (835)
Q Consensus 319 q~~~aLlV~AHYk-NsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLI 397 (835)
..++.|+..+.+. .+++++....+.+ +..+++.. + .+++|++.+...
T Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~---~~~vG~~~~~~~----------------------- 59 (133)
T 1y7r_A 12 EDYCALRINAGMSPKTREAAEKGLPNA-LFTVTLYD-----K---DRLIGMGRVIGD----------------------- 59 (133)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHGGGC-SEEEEEEE-----T---TEEEEEEEEEEC-----------------------
T ss_pred HHHHHHHHhCCCCCcCHHHHHhhCCcC-ceEEEEEE-----C---CEEEEEEEEEcc-----------------------
Confidence 3455566555433 5667777666643 33445541 1 368888766531
Q ss_pred hHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 398 PWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 398 Pw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.-..+.|..++|||+|||+|||+++++.+.++..
T Consensus 60 --------------~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~ 93 (133)
T 1y7r_A 60 --------------GGTVFQIVDIAVLKSYQGQAYGSLIMEHIMKYIK 93 (133)
T ss_dssp --------------SSSEEEEEEEEECGGGCSSSHHHHHHHHHHHHHH
T ss_pred --------------CCCeEEEEEEEEcHHHhcCchHHHHHHHHHHHHH
Confidence 1124789999999999999999999999998764
No 59
>3s6f_A Hypothetical acetyltransferase; acyl-COA N-acyltransferases, structural genomics, joint CENT structural genomics, JCSG; HET: MSE COA; 1.19A {Deinococcus radiodurans}
Probab=98.27 E-value=2e-06 Score=79.40 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=27.5
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
+.|.+|+|||+|||+|||+++++.+.+++.
T Consensus 74 ~~i~~l~V~p~~rg~GiG~~Ll~~~~~~~~ 103 (145)
T 3s6f_A 74 ASIPLLEVQAGWRSLGLGSELMRRVLTELG 103 (145)
T ss_dssp EECCCEEECTTSCSSSHHHHHHHHHHHHHC
T ss_pred EEEEEEEECHHHhcCcHHHHHHHHHHHHhc
Confidence 678899999999999999999999998764
No 60
>2gan_A 182AA long hypothetical protein; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.10A {Pyrococcus horikoshii} SCOP: d.108.1.1
Probab=98.27 E-value=5e-06 Score=79.64 Aligned_cols=101 Identities=19% Similarity=0.243 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHHHhc--ccC--------CChhHHHHh-----------hcCCCceEEEEecCCcccCCCCCCeEEEEEee
Q 003262 314 SELFLQRMMALYVSS--HYK--------NSPNDLQLM-----------ADAPAHHLFVLLGPVDESKNQLPDILCVIQVC 372 (835)
Q Consensus 314 sE~fLq~~~aLlV~A--HYk--------NsPnDLqlL-----------~DaPah~lfvL~~p~~~~~~~lp~il~viqVa 372 (835)
.+.-+..++.++-.+ .|. .++.|+..+ .+.+...+|++.. + .+++|++.+.
T Consensus 14 ~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~---~~~vG~~~~~ 85 (190)
T 2gan_A 14 KDELLELMFRIYRSTNGKYPALEWVKRKPNPNDFNGFREVYEPFLKFRLSQEFDELYTYQK-----D---NRIIGTIALV 85 (190)
T ss_dssp HHHHHHHHHHHHHHTTTCSSCCTTCSSCCCTTCHHHHHHHHHHHHHHHHHTTCSEEEEEEE-----S---SCEEEEEEEE
T ss_pred chhHhhhHheehhhhcccChHHHHhhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEE-----C---CEEEEEEEEE
Confidence 456666777776554 221 245555432 4567777887762 1 3789998887
Q ss_pred e-cCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 373 L-EGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 373 l-EG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
. ...- +.| .|. ......-..+.|..++|+|+|||+|||+++++.+.+++.
T Consensus 86 ~~~~~~--------------~~~---~~~------~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~ 136 (190)
T 2gan_A 86 YKRIKE--------------KGI---WWV------PEELMNEKVGLIEFFVVDPEFQGKGIGSTLLEFAVKRLR 136 (190)
T ss_dssp CSCGGG--------------TCC---TTC------CGGGCSTTEEEEEEEEECTTSTTSSHHHHHHHHHHHHHH
T ss_pred eccccc--------------ccc---ccc------ccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 5 2110 111 111 111233456789999999999999999999999998764
No 61
>1z4e_A Transcriptional regulator; nysgxrc target T2017, GNAT fold, structural genomics, PSI, P structure initiative; 2.00A {Bacillus halodurans} SCOP: d.108.1.1
Probab=98.27 E-value=3.2e-06 Score=77.65 Aligned_cols=30 Identities=30% Similarity=0.256 Sum_probs=27.5
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
+.|.+|+|||+|||+|||+++++.+.++..
T Consensus 86 ~~i~~l~V~p~~rg~GiG~~Ll~~~~~~a~ 115 (153)
T 1z4e_A 86 ATIEGVRTHSAARGQGIGSQLVCWAIERAK 115 (153)
T ss_dssp EEEEEEEECTTSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 578899999999999999999999998764
No 62
>3owc_A Probable acetyltransferase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: COA; 1.90A {Pseudomonas aeruginosa}
Probab=98.23 E-value=9.2e-06 Score=75.94 Aligned_cols=78 Identities=19% Similarity=0.185 Sum_probs=56.9
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccc
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVH 493 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~ 493 (835)
..+.|..|+|+|+|||+|||+++++.+.++...+.
T Consensus 92 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~a~~~~--------------------------------------------- 126 (188)
T 3owc_A 92 GVVRLARIVLAPSARGQGLGLPMLEALLAEAFADA--------------------------------------------- 126 (188)
T ss_dssp TEEEEEEEEECGGGTTSSCHHHHHHHHHHHHHHST---------------------------------------------
T ss_pred CEEEEEEEEEcHHHhCCChhHHHHHHHHHHHHHhh---------------------------------------------
Confidence 34788889999999999999999999999875320
Q ss_pred ccccCCCCcceE-EEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEE
Q 003262 494 LRERQPEKLNYI-GVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCM 543 (835)
Q Consensus 494 l~e~~~~~lDyl-GvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~I 543 (835)
+++.+ ...+--+....+||+|+||.++..........|...-.
T Consensus 127 -------g~~~i~~~~~~~N~~a~~~y~k~GF~~~~~~~~~~~~~g~~~d~ 170 (188)
T 3owc_A 127 -------DIERVELNVYDWNAAARHLYRRAGFREEGLRRSATRVGRERWNV 170 (188)
T ss_dssp -------TCCEEEEEEETTCHHHHHHHHHTTCEEEEEEEEEEEETTEEEEE
T ss_pred -------CceEEEEEEecCCHHHHHHHHHcCCEEeeeEeeEEEECCEEeeh
Confidence 01111 11222368899999999999999887766667764333
No 63
>2kcw_A Uncharacterized acetyltransferase YJAB; GNAT fold, acyltransferase; NMR {Escherichia coli}
Probab=98.23 E-value=1.3e-05 Score=72.37 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=26.0
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHH
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYY 444 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~ 444 (835)
..|..++|+|+|||+|||+++++.+.+++
T Consensus 71 ~~i~~~~v~p~~rg~Gig~~ll~~~~~~~ 99 (147)
T 2kcw_A 71 QHMDALFIDPDVRGCGVGRVLVEHALSMA 99 (147)
T ss_dssp TEEEEEEECHHHHTTTHHHHHHHHHHHHC
T ss_pred ceeccEEECHHHhCCCHHHHHHHHHHHhc
Confidence 35789999999999999999999988765
No 64
>1wwz_A Hypothetical protein PH1933; structural genomics, pyrococcus horikoshii OT3, riken struct genomics/proteomics initiative, RSGI; HET: ACO; 1.75A {Pyrococcus horikoshii} SCOP: d.108.1.1
Probab=98.22 E-value=5.5e-06 Score=77.62 Aligned_cols=31 Identities=10% Similarity=0.043 Sum_probs=28.2
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.+.|.+|+|+|+|||+|||+++|+.+.+++.
T Consensus 85 ~~~i~~l~V~p~~rg~GiG~~Ll~~~~~~~~ 115 (159)
T 1wwz_A 85 VGAIHEFVVDKKFQGKGIGRKLLITCLDFLG 115 (159)
T ss_dssp EEEEEEEEECGGGTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999999999998864
No 65
>3f5b_A Aminoglycoside N(6')acetyltransferase; APC60744, legionella pneumophila subsp. pneumophila, structural genomics, PSI-2; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=98.20 E-value=9.8e-06 Score=75.54 Aligned_cols=81 Identities=5% Similarity=-0.044 Sum_probs=56.8
Q ss_pred HHhcccCC-----ChhHHHHhh--cCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCch
Q 003262 325 YVSSHYKN-----SPNDLQLMA--DAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQI 397 (835)
Q Consensus 325 lV~AHYkN-----sPnDLqlL~--DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLI 397 (835)
.+...|.. ++.+++... ..+....|++.. + .+++|.+.+.....-
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~---~~~vG~~~~~~~~~~-------------------- 87 (182)
T 3f5b_A 36 HINEWLHGDGLSNTIKDLHEFLNDGKPWATHWIAYD-----N---EIPFAYLITSEIEKS-------------------- 87 (182)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHTTSCCSSEEEEEEE-----T---TEEEEEEEEEEECSC--------------------
T ss_pred hhhhhccCCCccccHHHHHHHHhcCCCCeEEEEEEe-----C---CCcEEEEEEeccccc--------------------
Confidence 44555544 667777666 567778887752 1 368998877644320
Q ss_pred hHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHH
Q 003262 398 PWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYY 444 (835)
Q Consensus 398 Pw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~ 444 (835)
....-..+.|..+.|+|+|||+|||+++++.+.++.
T Consensus 88 -----------~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~ 123 (182)
T 3f5b_A 88 -----------EEYPDGAVTLDLFICRLDYIGKGLSVQMIHEFILSQ 123 (182)
T ss_dssp -----------SSCTTCEEEEEEEECSGGGCCHHHHHHHHHHHHHHH
T ss_pred -----------cccCCCceEEEEEEEChhhcCCchHHHHHHHHHHHh
Confidence 111224578999999999999999999999998876
No 66
>3g8w_A Lactococcal prophage PS3 protein 05; APC61042, acetyltransferase, staphylococcus epidermidis ATCC structural genomics; HET: NHE FLC; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.20 E-value=2.4e-05 Score=72.23 Aligned_cols=80 Identities=11% Similarity=0.096 Sum_probs=60.9
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccc
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHL 494 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l 494 (835)
.+.|..++|+| ||+|||+++++.+.++.....
T Consensus 83 ~~~i~~~~v~~--rg~Gig~~ll~~~~~~a~~~g---------------------------------------------- 114 (169)
T 3g8w_A 83 KAILENNFVKN--NDEIVNRELINHIIQYAKEQN---------------------------------------------- 114 (169)
T ss_dssp EEEEEEEEEGG--GCHHHHHHHHHHHHHHHHHTT----------------------------------------------
T ss_pred eEEEEEEEEcc--CCCcHHHHHHHHHHHHHHHCC----------------------------------------------
Confidence 47899999999 999999999999999874321
Q ss_pred cccCCCCcce--EEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCC--ceEEEEccCCc
Q 003262 495 RERQPEKLNY--IGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGE--HTCMVLKPLHS 550 (835)
Q Consensus 495 ~e~~~~~lDy--lGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGE--hS~IMlr~L~~ 550 (835)
++. +.| +--+....+||+|+||.++..........|+ +..+|.+.|+.
T Consensus 115 -------~~~i~l~v-~~~N~~a~~~y~k~GF~~~g~~~~~~~~~g~~~d~~~m~~~l~~ 166 (169)
T 3g8w_A 115 -------IETLMIAI-ASNNISAKVFFSSIGFENLAFEKNASKIGNEYFDENWLIYSTTE 166 (169)
T ss_dssp -------CCEEEEEE-ETTCHHHHHHHHTTTCEEEEEEEEEEEETTEEEEEEEEEEECC-
T ss_pred -------CCEEEEEE-ecCCHHHHHHHHHcCCEEeeeecCcEEECCEehhHHHHHhhccc
Confidence 111 122 2337899999999999999987766666674 55788888874
No 67
>1qsm_A HPA2 histone acetyltransferase; protein-acetyl coenzyme A complex; HET: ACO; 2.40A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 1qso_A
Probab=98.19 E-value=1.1e-05 Score=72.35 Aligned_cols=32 Identities=9% Similarity=0.101 Sum_probs=29.0
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|..|+|||+|||+|||+++++.+.++..
T Consensus 82 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~ 113 (152)
T 1qsm_A 82 DKIYINDLYVDENSRVKGAGGKLIQFVYDEAD 113 (152)
T ss_dssp CEEEEEEEEECGGGCSSSHHHHHHHHHHHHHH
T ss_pred cceEEEEEEechhcccCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999998764
No 68
>1yx0_A Hypothetical protein YSNE; NESG, GFT structral genomics, SR220, structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis subsp} SCOP: d.108.1.1
Probab=98.19 E-value=2.9e-06 Score=79.20 Aligned_cols=111 Identities=11% Similarity=0.047 Sum_probs=75.5
Q ss_pred hhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCCCCCcccEEE
Q 003262 340 MADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIV 419 (835)
Q Consensus 340 L~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~lsgaRIV 419 (835)
..+.|...+|++.. + .+++|++.+...+ -..+.|.
T Consensus 40 ~~~~~~~~~~v~~~-----~---~~~vG~~~~~~~~-------------------------------------~~~~~i~ 74 (159)
T 1yx0_A 40 KLRGPEITFWSAWE-----G---DELAGCGALKELD-------------------------------------TRHGEIK 74 (159)
T ss_dssp HHSSSSCEEEEEEC-----S---SSEEEEEEEEEEE-------------------------------------TTEEECC
T ss_pred HhcCCCceEEEEEE-----C---CEEEEEEEEEEcC-------------------------------------CCcEEEE
Confidence 34567888888762 1 3688988776442 0146788
Q ss_pred EEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccCC
Q 003262 420 RIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQP 499 (835)
Q Consensus 420 RIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~~ 499 (835)
.++|+|+|||+|||+++++.+.+++....
T Consensus 75 ~~~V~p~~rg~Gig~~ll~~~~~~~~~~g--------------------------------------------------- 103 (159)
T 1yx0_A 75 SMRTSASHLRKGVAKQVLQHIIEEAEKRG--------------------------------------------------- 103 (159)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHT---------------------------------------------------
T ss_pred EEEECHhhcCCCHHHHHHHHHHHHHHhCC---------------------------------------------------
Confidence 99999999999999999999998874221
Q ss_pred CCcceEEEecCC---CHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCC
Q 003262 500 EKLNYIGVSFGL---TLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLH 549 (835)
Q Consensus 500 ~~lDylGvSFGl---T~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~ 549 (835)
+..+-+.-.. +....+||+|+||.++.....+. ..|+.-|+|-.+..
T Consensus 104 --~~~i~l~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~-~~~~~~~~~~~~~~ 153 (159)
T 1yx0_A 104 --YERLSLETGSMASFEPARKLYESFGFQYCEPFADYG-EDPNSVFMTKKLLE 153 (159)
T ss_dssp --CSCEECCCSSCTTHHHHHHHHHTTSEEECCCCTTSC-CCTTCCCEEECC--
T ss_pred --CcEEEEEecccccCchHHHHHHHcCCEEcccccccc-CCCcchhhhHHHHh
Confidence 1111111111 57899999999999998777665 45666666655443
No 69
>3dsb_A Putative acetyltransferase; APC60368.2, ST genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.48A {Clostridium difficile}
Probab=98.18 E-value=1.3e-05 Score=72.14 Aligned_cols=33 Identities=9% Similarity=-0.019 Sum_probs=29.6
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHhc
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEG 446 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g 446 (835)
.++.|..|+|+|+|||+|||+++++.+.+++..
T Consensus 83 ~~~~i~~~~V~p~~rg~Gig~~ll~~~~~~~~~ 115 (157)
T 3dsb_A 83 NFLWIQSVYVDKEYRRKGIFNYLFNYIKNICDK 115 (157)
T ss_dssp EEEEEEEEEECGGGCSSSHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEECHHHhcCCHHHHHHHHHHHHHHh
Confidence 457799999999999999999999999998753
No 70
>1vhs_A Similar to phosphinothricin acetyltransferase; structural genomics, unknown function; 1.80A {Bacillus subtilis} SCOP: d.108.1.1
Probab=98.18 E-value=5.2e-06 Score=79.00 Aligned_cols=79 Identities=18% Similarity=0.208 Sum_probs=58.3
Q ss_pred EEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccC
Q 003262 419 VRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQ 498 (835)
Q Consensus 419 VRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~ 498 (835)
+.|+|+|+|||+|||+++++.+.++....
T Consensus 85 ~~l~V~p~~rg~GiG~~ll~~~~~~a~~~--------------------------------------------------- 113 (175)
T 1vhs_A 85 VSIYIDEACRGKGVGSYLLQEALRIAPNL--------------------------------------------------- 113 (175)
T ss_dssp EEEEECGGGCSSSHHHHHHHHHHHHGGGG---------------------------------------------------
T ss_pred EEEEEChhhcCCCHHHHHHHHHHHHHHhC---------------------------------------------------
Confidence 48999999999999999999999886421
Q ss_pred CCCcceEE-EecCCCHHHHHHHHHCCCeEEEeeecccCCCC--CceEEEEccCCc
Q 003262 499 PEKLNYIG-VSFGLTLDLFRFWRKHKFAPFYVSQNANAVTG--EHTCMVLKPLHS 550 (835)
Q Consensus 499 ~~~lDylG-vSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TG--EhS~IMlr~L~~ 550 (835)
++..|- ..+--+....+||+|+||..+..........| .+.++|-+.++.
T Consensus 114 --g~~~i~l~v~~~N~~A~~~yek~GF~~~g~~~~~~~~~g~~~d~~~m~~~~~~ 166 (175)
T 1vhs_A 114 --GIRSLMAFIFGHNKPSLKLFEKHGFAEWGLFPGIAEMDGKRYDLKILGRELSE 166 (175)
T ss_dssp --TCSEEEEEEETTCHHHHHHHHHTTCEEEEEEEEEEEETTEEEEEEEEEEECCC
T ss_pred --CceEEEEEEecCCHHHHHHHHHCCCEEEeEcccceeeCCEEEEEEEEEEECCC
Confidence 111111 12334789999999999999988776554566 567788776653
No 71
>2ozh_A Hypothetical protein XCC2953; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.40A {Xanthomonas campestris PV}
Probab=98.17 E-value=1.3e-05 Score=72.88 Aligned_cols=80 Identities=10% Similarity=0.011 Sum_probs=53.6
Q ss_pred HHHHHHHHHh-ccc--CCChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCC
Q 003262 318 LQRMMALYVS-SHY--KNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSG 394 (835)
Q Consensus 318 Lq~~~aLlV~-AHY--kNsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~G 394 (835)
+..+..|+.. ..+ ..++.+++.+.+. ...|++.. + .+++|.+.+...+
T Consensus 16 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~---~~~vG~~~~~~~~------------------- 66 (142)
T 2ozh_A 16 IGLIHRTLSQDTDWAKDIPLALVQRAIDH--SLCFGGFV-----D---GRQVAFARVISDY------------------- 66 (142)
T ss_dssp HHHHHHHHHHHCSTTTTCCHHHHHHHHHT--SEEEEEEE-----T---TEEEEEEEEEECS-------------------
T ss_pred HHHHHHHHhhccccCCCCCHHHHHHHhcc--CcEEEEEE-----C---CEEEEEEEEEecC-------------------
Confidence 3445555554 343 2356788776664 35566542 1 3688888665321
Q ss_pred CchhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHH
Q 003262 395 DQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYY 444 (835)
Q Consensus 395 dLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~ 444 (835)
-..+.|..|+|||+|||+|||+++++.+.++.
T Consensus 67 ------------------~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~ 98 (142)
T 2ozh_A 67 ------------------ATFAYLGDVFVLPEHRGRGYSKALMDAVMAHP 98 (142)
T ss_dssp ------------------SSEEEEEEEEECGGGTTSSHHHHHHHHHHHCG
T ss_pred ------------------CCcEEEEEEEECHHHcCCCHHHHHHHHHHHHH
Confidence 02268899999999999999999999988765
No 72
>2oh1_A Acetyltransferase, GNAT family; YP_013287.1, structural genom joint center for structural genomics, JCSG, protein structu initiative; HET: MSE UNL; 1.46A {Listeria monocytogenes str}
Probab=98.16 E-value=8.8e-06 Score=75.64 Aligned_cols=32 Identities=6% Similarity=0.011 Sum_probs=29.3
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|.+|+|||+|||+|||+++++.+.++..
T Consensus 102 ~~~~i~~l~V~p~~rg~Gig~~ll~~~~~~a~ 133 (179)
T 2oh1_A 102 KAYYLHRIMVSRAFSGISLSKQMIYFAEKLGI 133 (179)
T ss_dssp CEEEEEEEEECGGGTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999998764
No 73
>4fd5_A Arylalkylamine N-acetyltransferase 2; GNAT; 1.64A {Aedes aegypti} PDB: 4fd6_A
Probab=98.16 E-value=3.3e-05 Score=76.27 Aligned_cols=32 Identities=9% Similarity=-0.054 Sum_probs=29.0
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|..|+|+|+|||+|+|+++++.+.++..
T Consensus 129 ~~~~i~~~~v~~~~rg~Gig~~l~~~~~~~~~ 160 (222)
T 4fd5_A 129 KIFEIRILSVDSRFRGKGLAKKLIEKSEELAL 160 (222)
T ss_dssp EEEEEEEEEECGGGTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999988764
No 74
>1u6m_A Acetyltransferase, GNAT family; structural genomics, PSI, protein structure initiative; 2.40A {Enterococcus faecalis} SCOP: d.108.1.1
Probab=98.15 E-value=6.8e-06 Score=79.63 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=58.3
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccc
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVH 493 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~ 493 (835)
..+.|.+|+|+|+|||+|+|+++|+.+.++...+.
T Consensus 111 ~~~~i~~l~V~p~~rg~GiG~~Ll~~~~~~a~~~g--------------------------------------------- 145 (199)
T 1u6m_A 111 NEWYLDTISVDERFRGMGIGSKLLDALPEVAKASG--------------------------------------------- 145 (199)
T ss_dssp TEEEEEEEEECGGGTTSSHHHHHHHTHHHHHHTTT---------------------------------------------
T ss_pred CeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcC---------------------------------------------
Confidence 34689999999999999999999999988764221
Q ss_pred ccccCCCCcc--eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCCc
Q 003262 494 LRERQPEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHS 550 (835)
Q Consensus 494 l~e~~~~~lD--ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~~ 550 (835)
+. ++.|.- -+....+||+|+||..+..... .|..-..|++++..
T Consensus 146 --------~~~i~L~v~~-~N~~A~~fY~k~GF~~~~~~~~----~~~~~~~m~~~~~~ 191 (199)
T 1u6m_A 146 --------KQALGLNVDF-DNPGARKLYASKGFKDVTTMTI----SGHLYNHMQKEVEG 191 (199)
T ss_dssp --------CSEEEEEEET-TCHHHHHHHHTTTCEEEEEEEE----TTEEEEEEEEEC--
T ss_pred --------CCEEEEEEec-CCHHHHHHHHHCCCEEccEEEe----CCceEEEEEEeccC
Confidence 11 223322 2788999999999999886543 35556789988764
No 75
>2eui_A Probable acetyltransferase; dimer, structural genomics, PSI, protein structure initiative; 2.80A {Pseudomonas aeruginosa PAO1} SCOP: d.108.1.1
Probab=98.14 E-value=6.7e-06 Score=73.63 Aligned_cols=32 Identities=9% Similarity=-0.109 Sum_probs=29.0
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|..++|+|+|||+|||+++++.+.++..
T Consensus 77 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~ 108 (153)
T 2eui_A 77 RVWILNDIYVAEEARRQLVADHLLQHAKQMAR 108 (153)
T ss_dssp EEEEEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEcHHHhcCChHHHHHHHHHHHHH
Confidence 45788899999999999999999999998874
No 76
>3exn_A Probable acetyltransferase; GCN5-related N-acetyltransferase, MCSG, P structural genomics, protein structure initiative; HET: ACO; 1.80A {Thermus thermophilus}
Probab=98.13 E-value=2.1e-05 Score=71.17 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=28.5
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|..++|+|+|||+|||+++++.+.+++.
T Consensus 87 ~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~ 118 (160)
T 3exn_A 87 EDATLSLLLIREDHQGRGLGRQALERFAAGLD 118 (160)
T ss_dssp TCEEEEEEEECGGGTTSSHHHHHHHHHHHTCT
T ss_pred CceEEEEEEECHHHcCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999999887653
No 77
>2aj6_A Hypothetical protein MW0638; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.63A {Staphylococcus aureus subsp} SCOP: d.108.1.1
Probab=98.12 E-value=1.5e-05 Score=74.24 Aligned_cols=89 Identities=11% Similarity=0.212 Sum_probs=59.4
Q ss_pred CcHHHHHHHHHHHHh------cccCCChhH-------HHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCH
Q 003262 313 ESELFLQRMMALYVS------SHYKNSPND-------LQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISR 379 (835)
Q Consensus 313 ~sE~fLq~~~aLlV~------AHYkNsPnD-------LqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~ 379 (835)
+++.=+..+..|+-. ..|...|.+ +....+.+...+|++.. + .+++|.+.+....
T Consensus 19 ~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~---~~~vG~~~~~~~~---- 86 (159)
T 2aj6_A 19 DEHNYIKQIANIHETLLSQVESNYKCTKLSIALRYEMICSRLEHTNDKIYIYEN-----E---GQLIAFIWGHFSN---- 86 (159)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHSSSEEEEEEEE-----T---TEEEEEEEEEEET----
T ss_pred CchhhHHHHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHhCCCcEEEEEEE-----C---CeEEEEEEEEeec----
Confidence 334444445555442 347666632 44445567777777652 1 3688988776431
Q ss_pred HHHHHHHhcCCCCCCCchhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 380 RSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 380 ~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.-..+.|..++|||+|||+|||+++++.+.+++.
T Consensus 87 --------------------------------~~~~~~i~~~~V~p~~rg~Gig~~ll~~~~~~~~ 120 (159)
T 2aj6_A 87 --------------------------------EKSMVNIELLYVEPQFRKLGIATQLKIALEKWAK 120 (159)
T ss_dssp --------------------------------TTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHH
T ss_pred --------------------------------CCCEEEEEEEEECHHHccCCHHHHHHHHHHHHHH
Confidence 1234688899999999999999999999998875
No 78
>1bo4_A Protein (serratia marcescens aminoglycoside-3-N- acetyltransferase); eubacterial aminoglyco resistance, GCN5-related N-acetyltransferase; HET: SPD COA; 2.30A {Serratia marcescens} SCOP: d.108.1.1
Probab=98.12 E-value=4.4e-06 Score=76.67 Aligned_cols=73 Identities=11% Similarity=0.129 Sum_probs=54.3
Q ss_pred ChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCCCC
Q 003262 333 SPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPS 412 (835)
Q Consensus 333 sPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~ 412 (835)
+.+.+..+.+.+....|++.. + .+++|.+.+....... ..
T Consensus 63 ~~~~~~~~~~~~~~~~~v~~~-----~---~~~vG~~~~~~~~~~~--------------------------------~~ 102 (168)
T 1bo4_A 63 DSDYLGNLLRSKTFIALAAFD-----Q---EAVVGALAAYVLPKFE--------------------------------QP 102 (168)
T ss_dssp CHHHHHHHHHSSSEEEEEEEE-----T---TEEEEEEEEEEEECSS--------------------------------SS
T ss_pred hHHHHHHHhcCCCeEEEEEEE-----C---CeEEEEEEEEeccCcc--------------------------------CC
Confidence 456677777778877887752 1 3689988877543210 11
Q ss_pred CcccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 413 LSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 413 lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
-..+.|..++|+|+|||+|||+++++.+.+++.
T Consensus 103 ~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~a~ 135 (168)
T 1bo4_A 103 RSEIYIYDLAVSGEHRRQGIATALINLLKHEAN 135 (168)
T ss_dssp CEEEEEEEEEECTTSTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEECHHHhcCCHHHHHHHHHHHHHH
Confidence 245789999999999999999999999998875
No 79
>2ge3_A Probable acetyltransferase; structural GEN PSI, protein structure initiative, midwest center for struc genomics, MCSG; HET: ACO; 2.25A {Agrobacterium tumefaciens} SCOP: d.108.1.1
Probab=98.12 E-value=9.9e-06 Score=75.64 Aligned_cols=80 Identities=11% Similarity=0.077 Sum_probs=57.1
Q ss_pred EEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccccc
Q 003262 418 IVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRER 497 (835)
Q Consensus 418 IVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~ 497 (835)
++.|+|+|+|||+|||+++++.+.++...... .
T Consensus 88 ~~~~~v~p~~rg~Gig~~ll~~~~~~a~~~g~---------------~-------------------------------- 120 (170)
T 2ge3_A 88 TLGMGILPAYRNKGLGARLMRRTLDAAHEFGL---------------H-------------------------------- 120 (170)
T ss_dssp EEEEEECGGGTTSSHHHHHHHHHHHHHHHHTC---------------C--------------------------------
T ss_pred EEEEEECHHHhCCCHHHHHHHHHHHHHHHCCc---------------e--------------------------------
Confidence 34899999999999999999999988642110 0
Q ss_pred CCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCC--ceEEEEccCC
Q 003262 498 QPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGE--HTCMVLKPLH 549 (835)
Q Consensus 498 ~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGE--hS~IMlr~L~ 549 (835)
.+ ++.| +--+....+||+|+||.++..........|+ +.++|-+.+.
T Consensus 121 ---~i-~l~v-~~~N~~a~~~y~k~GF~~~~~~~~~~~~~g~~~d~~~~~~~~~ 169 (170)
T 2ge3_A 121 ---RI-ELSV-HADNARAIALYEKIGFAHEGRARDAVSIDGHYIDSLNMAIIFG 169 (170)
T ss_dssp ---EE-EEEE-ETTCHHHHHHHHHHTCEEEEEEEEEEESSSCEEEEEEEEEECC
T ss_pred ---EE-EEEE-EcCCHHHHHHHHHCCCEEEeEecceEeeCCEEeeeeeEeehhc
Confidence 00 1122 2236899999999999999877665545674 6677777653
No 80
>3jvn_A Acetyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.61A {Vibrio fischeri}
Probab=98.11 E-value=6.4e-06 Score=75.66 Aligned_cols=72 Identities=17% Similarity=0.083 Sum_probs=50.2
Q ss_pred HHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCCCCCccc
Q 003262 337 LQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGA 416 (835)
Q Consensus 337 LqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~lsga 416 (835)
+....+.|...+||+.. + .+++|.+.+......+ ........+
T Consensus 47 ~~~~~~~~~~~~~v~~~-----~---~~~vG~~~~~~~~~~~-----------------------------~~~~~~~~~ 89 (166)
T 3jvn_A 47 IARYLDDPECMVYVAEM-----D---DVIIGFITGHFCELIS-----------------------------TVSKLVMMA 89 (166)
T ss_dssp HHHHHHCTTEEEEEEES-----S---SSEEEEEEEEEEEECC-----------------------------SSSCCEEEE
T ss_pred HHHHhcCCCcEEEEEEE-----C---CEEEEEEEEEeecccc-----------------------------ccccCccEE
Confidence 44566678888888762 2 3789988766322111 000112346
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 417 RIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 417 RIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.|..|+|+|+|||+|||+++++.+.+++.
T Consensus 90 ~i~~l~V~p~~rg~Gig~~ll~~~~~~a~ 118 (166)
T 3jvn_A 90 TIDELYIEKEYRREGVAEQLMMRIEQELK 118 (166)
T ss_dssp EEEEEEECTTTCSSSHHHHHHHHHHHHHH
T ss_pred EEEEEEECHHHhccCHHHHHHHHHHHHHH
Confidence 89999999999999999999999998875
No 81
>1y9k_A IAA acetyltransferase; structural genomics, midwest center for structural genomics bacillus cereus ATCC 14579, PSI; 2.39A {Bacillus cereus atcc 14579} SCOP: d.108.1.1
Probab=98.11 E-value=9.1e-06 Score=75.09 Aligned_cols=82 Identities=13% Similarity=0.130 Sum_probs=60.5
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccc
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHL 494 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l 494 (835)
.+.|..++|+|+|||+|||+++++.+.++.....
T Consensus 61 ~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~g---------------------------------------------- 94 (157)
T 1y9k_A 61 TMEIMNIAVAEHLQGKGIGKKLLRHAVETAKGYG---------------------------------------------- 94 (157)
T ss_dssp EEEEEEEEECGGGCSSSHHHHHHHHHHHHHHHTT----------------------------------------------
T ss_pred EEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCC----------------------------------------------
Confidence 5788999999999999999999999998764211
Q ss_pred cccCCCCcceE-EEecCCCHHHHHHHHHCCCeEEEeeecccC--------CCC---CceEEEEccCC
Q 003262 495 RERQPEKLNYI-GVSFGLTLDLFRFWRKHKFAPFYVSQNANA--------VTG---EHTCMVLKPLH 549 (835)
Q Consensus 495 ~e~~~~~lDyl-GvSFGlT~~Ll~FWkk~GF~pVylrq~~ne--------~TG---EhS~IMlr~L~ 549 (835)
+..+ .....-+....+||+|+||.++.....+.. ..| .+.++|-|.|+
T Consensus 95 -------~~~i~~~~~~~n~~a~~~y~k~Gf~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~m~k~l~ 154 (157)
T 1y9k_A 95 -------MSKLEVGTGNSSVSQLALYQKCGFRIFSIDFDYFSKHYEEEIIENGIVCRDMIRLAMELN 154 (157)
T ss_dssp -------CSEEEEEEETTCHHHHHHHHHTTCEEEEEETTHHHHHCSSCEEETTEEECSEEEEEEECC
T ss_pred -------CCEEEEEeCCCCHHHHHHHHHCCCEEeccccccccCCCchHHHHcCCchHHHhhHHHHhc
Confidence 1111 112233677999999999999987766542 345 46788998886
No 82
>3ddd_A Putative acetyltransferase; NP_142035.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: COA; 2.25A {Pyrococcus horikoshii}
Probab=98.09 E-value=1.1e-05 Score=83.57 Aligned_cols=81 Identities=11% Similarity=0.225 Sum_probs=58.2
Q ss_pred HHHHHHHHH-hcccCCChhH-----HHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCC
Q 003262 318 LQRMMALYV-SSHYKNSPND-----LQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQ 391 (835)
Q Consensus 318 Lq~~~aLlV-~AHYkNsPnD-----LqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~R 391 (835)
+..++.|+. ...| ..+.| ++.+.+.+....|++.. + .+++|++.+...+
T Consensus 30 ~~~i~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~---g~~vG~~~~~~~~---------------- 84 (288)
T 3ddd_A 30 IEDMVSIFIDAYNF-PGPRESVKSSFEISLEVQPDGCLLAFL-----K---DEPVGMGCIFFYN---------------- 84 (288)
T ss_dssp HHHHHHHHHHHHTC-CSCHHHHHHHHHHHHHHCTTCEEEEEE-----T---TEEEEEEEEEECS----------------
T ss_pred HHHHHHHHHhccCC-CCchhhhHHHHHHHHhCCCCEEEEEEE-----C---CEEEEEEEEEEEC----------------
Confidence 456666766 5667 45566 66666655566676652 1 3689988776411
Q ss_pred CCCCchhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 392 PSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 392 p~GdLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|..++|||+|||+|||+++++.+.+++.
T Consensus 85 ----------------------~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~~~ 116 (288)
T 3ddd_A 85 ----------------------KQAWIGLMGVKKAYQRRGIGTEVFRRLLEIGR 116 (288)
T ss_dssp ----------------------SEEEEEEEEECGGGCSSSHHHHHHHHHHHHHH
T ss_pred ----------------------CEEEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 34678899999999999999999999998764
No 83
>2j8m_A Acetyltransferase PA4866 from P. aeruginosa; GCN5 family, phosphinothricin, methionine sulfone, methionine sulfoximine; 1.44A {Pseudomonas aeruginosa} PDB: 2bl1_A 2j8n_A 2j8r_A* 1yvo_A
Probab=98.09 E-value=1.1e-05 Score=75.84 Aligned_cols=81 Identities=11% Similarity=-0.009 Sum_probs=58.0
Q ss_pred EEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccccc
Q 003262 418 IVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRER 497 (835)
Q Consensus 418 IVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~ 497 (835)
..+|+|+|+|||+|||+++++.+.++.....
T Consensus 85 ~~~~~V~p~~rg~Gig~~ll~~~~~~a~~~g------------------------------------------------- 115 (172)
T 2j8m_A 85 EHSVYVRDDQRGKGLGVQLLQALIERARAQG------------------------------------------------- 115 (172)
T ss_dssp EEEEEECTTCTTSSHHHHHHHHHHHHHHHTT-------------------------------------------------
T ss_pred EEEEEEChhhcCCCHHHHHHHHHHHHHHHCC-------------------------------------------------
Confidence 4579999999999999999999999874211
Q ss_pred CCCCcceEE-EecCCCHHHHHHHHHCCCeEEEeeecccCCCC--CceEEEEccCCcc
Q 003262 498 QPEKLNYIG-VSFGLTLDLFRFWRKHKFAPFYVSQNANAVTG--EHTCMVLKPLHSE 551 (835)
Q Consensus 498 ~~~~lDylG-vSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TG--EhS~IMlr~L~~~ 551 (835)
++.+- ..+--+....+||+|+||..+..........| .+.++|-+.++..
T Consensus 116 ----~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~~~~~~~~g~~~d~~~m~~~~~~~ 168 (172)
T 2j8m_A 116 ----LHVMVAAIESGNAASIGLHRRLGFEISGQMPQVGQKFGRWLDLTFMQLNLDPT 168 (172)
T ss_dssp ----CCEEEEEEETTCHHHHHHHHHTTCEEEEEEEEEEEETTEEEEEEEEEEESCTT
T ss_pred ----ccEEEEEEcCCCHHHHHHHHHCCCEEEeeccccceecCEEeEHHHHHhhhccC
Confidence 11111 11233788999999999999987654433345 4678888877643
No 84
>2g0b_A FEEM; N-acyl transferase, environmental DNA, protein-product compl antibiotic synthase, transferase; HET: NLT; 3.00A {Uncultured bacterium}
Probab=98.09 E-value=7e-05 Score=75.50 Aligned_cols=153 Identities=10% Similarity=0.031 Sum_probs=98.2
Q ss_pred HHHHHHH----HHhcccCCChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCC
Q 003262 318 LQRMMAL----YVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPS 393 (835)
Q Consensus 318 Lq~~~aL----lV~AHYkNsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~ 393 (835)
+.+++.| |+..+|-... -+....+.|.+.+|++.. + .+++|.+.+..-...+.. .
T Consensus 18 ~~~i~~Lr~~~y~e~~~~~~~-~~~~~~~~~~~~~~~a~~-----~---g~ivG~~~l~~~~~~~lp------------~ 76 (198)
T 2g0b_A 18 RDAARRIVRTTYEAQGYAIDE-SFATFLEGPSATTFGLFN-----G---EVLYGTISIINDGAQGLP------------M 76 (198)
T ss_dssp HHHHHHHHHHHHHHTTCCCCH-HHHHHHTSTTEEEEEEEE-----T---TEEEEEEEEEECBTTBCT------------T
T ss_pred HHHHHHHHHHHHHHhccCccc-ccchhhcCCCcEEEEEEE-----C---CEEEEEEEEEeCCCcCCc------------h
Confidence 4555544 6667774332 455666889999988862 1 378998887764321100 0
Q ss_pred CCchhHHHHHhhccCCCCCCcccEEEEEeeCccc--------ccCChHHHHHHHHHHHHhcccccccccccccccCCcch
Q 003262 394 GDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSA--------MRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEV 465 (835)
Q Consensus 394 GdLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~--------q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~ 465 (835)
+-+.++-..-. ....-..+.|.||||+|+| |+.|+|..+++.+.++......
T Consensus 77 -~~~~~~e~~~~---~~~~~~~~EI~RLaV~~~~~~~~~~~~rg~gig~~L~~~a~~~a~~~g~---------------- 136 (198)
T 2g0b_A 77 -DSIYAVELAAW---RGEGKKLAEVVQFAMDHTLYEAVAGAKPSPFEAASLFTMVLTYALETHI---------------- 136 (198)
T ss_dssp -HHHHHHHHHHH---HHTTCCEEEEEEEEECTTSSCCCC----CGGGCHHHHHHHHHHHHHTTC----------------
T ss_pred -hhhchhhhhhh---hhcCCcEEEEEEEEEchHHhhcccccccCChHHHHHHHHHHHHHHHcCC----------------
Confidence 00001000000 0112356899999999999 9999999999998887642211
Q ss_pred hhhhHHhhhhcccccccCCCCCCcccccccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEE
Q 003262 466 RVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVL 545 (835)
Q Consensus 466 ~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMl 545 (835)
.-=|+ -.++...+||+|.||.++.-...+.. .|..+++|-
T Consensus 137 -----------------------------------~~i~l----evn~ra~~FY~k~GF~~~g~~~fy~~-~g~p~~lm~ 176 (198)
T 2g0b_A 137 -----------------------------------DYLCI----SINPKHDTFYSLLGFTQIGALKHYGT-VNAPAIARA 176 (198)
T ss_dssp -----------------------------------SEEEE----EECGGGHHHHHHTTCEEEEEEEEETT-TTEEEEEEE
T ss_pred -----------------------------------CEEEE----EeCHHHHHHHHHCCCEEeeCCccCCC-CCcceEeee
Confidence 00133 23788899999999999998776654 599999999
Q ss_pred ccCCcc
Q 003262 546 KPLHSE 551 (835)
Q Consensus 546 r~L~~~ 551 (835)
..+..-
T Consensus 177 ~~~~~~ 182 (198)
T 2g0b_A 177 LYVPEW 182 (198)
T ss_dssp EEGGGG
T ss_pred cCHHHH
Confidence 888754
No 85
>3fnc_A Protein LIN0611, putative acetyltransferase; GNAT, RIMI, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.75A {Listeria innocua} SCOP: d.108.1.0
Probab=98.08 E-value=1.1e-05 Score=73.46 Aligned_cols=32 Identities=13% Similarity=0.275 Sum_probs=29.0
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|..|+|||+|||+|||+++++.+.+++.
T Consensus 83 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~ 114 (163)
T 3fnc_A 83 GKSELAAFYLLPEVTQRGLGTELLEVGMTLFH 114 (163)
T ss_dssp TEEEEEEEEECGGGCSSSHHHHHHHHHHHHTT
T ss_pred CcEEEEEEEECHHHhCCCHHHHHHHHHHHHhc
Confidence 35789999999999999999999999998864
No 86
>2b5g_A Diamine acetyltransferase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: ALY; 1.70A {Homo sapiens} SCOP: d.108.1.1 PDB: 2b4d_A* 2jev_A* 2g3t_A 2f5i_A 2b3u_A 2b3v_A* 2b4b_A* 2b58_A* 2fxf_A* 3bj7_A* 3bj8_A*
Probab=98.08 E-value=3e-05 Score=71.46 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=27.9
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
+.|..|+|||+|||+|||+++++.+.+++.
T Consensus 89 ~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~ 118 (171)
T 2b5g_A 89 LYLEDFFVMSDYRGFGIGSEILKNLSQVAM 118 (171)
T ss_dssp EEEEEEEECGGGCSSSHHHHHHHHHHHHHH
T ss_pred EEEEEEEECHhhhCCCHHHHHHHHHHHHHH
Confidence 679999999999999999999999998874
No 87
>3fyn_A Integron gene cassette protein HFX_CASS3; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 1.45A {Uncultured bacterium}
Probab=98.07 E-value=2e-05 Score=73.75 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=29.5
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHhc
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEG 446 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g 446 (835)
..+.|..|+|||+|||+|||+++++.+.+++..
T Consensus 99 ~~~~i~~~~V~p~~rg~Gig~~ll~~~~~~a~~ 131 (176)
T 3fyn_A 99 LRGFVDDFFVRPNARGKGLGAAALQTVKQGCCD 131 (176)
T ss_dssp EEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEChhhcCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999988753
No 88
>2r1i_A GCN5-related N-acetyltransferase; YP_831484.1, putative acetyltransferase, arthrobacter SP. FB acetyltransferase (GNAT) family; HET: MSE; 1.65A {Arthrobacter SP}
Probab=98.07 E-value=5e-05 Score=69.88 Aligned_cols=32 Identities=13% Similarity=0.053 Sum_probs=29.0
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|..++|+|+|||+|||+++++.+.++..
T Consensus 96 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~a~ 127 (172)
T 2r1i_A 96 PVAILDELYVRPGRRGHRLGSALLAASCGLVR 127 (172)
T ss_dssp CEEEEEEEECCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999998764
No 89
>3eg7_A Spermidine N1-acetyltransferase; structural genomics, IDP016 transferase, center for structural genomics of infectious D csgid; HET: MSE; 2.38A {Vibrio cholerae} SCOP: d.108.1.0
Probab=98.07 E-value=5.5e-05 Score=70.04 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=50.6
Q ss_pred EEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccC
Q 003262 419 VRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQ 498 (835)
Q Consensus 419 VRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~ 498 (835)
+.++|+|+|||+|||+++++.+.++...+.
T Consensus 88 ~~~~v~~~~rg~Gig~~ll~~~~~~a~~~~-------------------------------------------------- 117 (176)
T 3eg7_A 88 FQIIIAPEHQGKGFARTLINRALDYSFTIL-------------------------------------------------- 117 (176)
T ss_dssp EEEEECGGGTTSSCHHHHHHHHHHHHHHTS--------------------------------------------------
T ss_pred EEEEECHHHhCCCHHHHHHHHHHHHHHHhC--------------------------------------------------
Confidence 469999999999999999999998864210
Q ss_pred CCCcc--eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCC
Q 003262 499 PEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGE 539 (835)
Q Consensus 499 ~~~lD--ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGE 539 (835)
++. ++.| +--+....+||+|+||.++..........|+
T Consensus 118 --g~~~i~~~~-~~~N~~a~~~y~k~GF~~~~~~~~~~~~~g~ 157 (176)
T 3eg7_A 118 --NLHKIYLHV-AVENPKAVHLYEECGFVEEGHLVEEFFINGR 157 (176)
T ss_dssp --CCSEEEEEE-ETTCHHHHHHHHHTTCEEEEEEEEEEEETTE
T ss_pred --CccEEEEEe-hhcCHHHHHHHHHCCCEEeeeehhhhccCCE
Confidence 001 1222 2236889999999999999986666556775
No 90
>2jlm_A Putative phosphinothricin N-acetyltransferase; methionine sulfoximine; 2.35A {Acinetobacter baylyi}
Probab=98.06 E-value=1.3e-05 Score=76.85 Aligned_cols=82 Identities=12% Similarity=0.001 Sum_probs=59.1
Q ss_pred EEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccccc
Q 003262 418 IVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRER 497 (835)
Q Consensus 418 IVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~ 497 (835)
+..|+|||+|||+|||++|++.+.+|...... .++
T Consensus 93 e~~~~v~p~~rg~Gig~~ll~~~~~~a~~~g~---------------~~i------------------------------ 127 (182)
T 2jlm_A 93 EHSVYIHKDYRGLGLSKHLMNELIKRAVESEV---------------HVM------------------------------ 127 (182)
T ss_dssp EEEEEECTTSTTSSHHHHHHHHHHHHHHHTTC---------------CEE------------------------------
T ss_pred EEEEEEChhhcCCCHHHHHHHHHHHHHHHCCc---------------eEE------------------------------
Confidence 46899999999999999999999998742110 000
Q ss_pred CCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCC--CceEEEEccCCcc
Q 003262 498 QPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTG--EHTCMVLKPLHSE 551 (835)
Q Consensus 498 ~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TG--EhS~IMlr~L~~~ 551 (835)
++.| +--+....+||+|+||..+..........| .+.++|-+.++..
T Consensus 128 ------~l~v-~~~N~~a~~~yek~GF~~~g~~~~~~~~~g~~~d~~~m~~~~~~~ 176 (182)
T 2jlm_A 128 ------VGCI-DATNVASIQLHQKLGFIHSGTIQQAGFKFGRWLDAAFYQLTLDTP 176 (182)
T ss_dssp ------EEEE-ETTCHHHHHHHHHTTCEEEEEEEEEEEETTEEEEEEEEEEECSCC
T ss_pred ------EEEE-eCCCHHHHHHHHHCCCcEEEEeeeeeeeCCEEEEeeeehhhhccC
Confidence 1112 223789999999999999988765544456 5678888777543
No 91
>2fl4_A Spermine/spermidine acetyltransferase; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: d.108.1.1
Probab=98.04 E-value=2.1e-05 Score=73.16 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=54.1
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccc
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLR 495 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~ 495 (835)
+.|.+|+|+|+|||+|||+++++.+.++...... +
T Consensus 71 ~~i~~~~v~~~~~g~Gig~~ll~~~~~~~~~~~~-~-------------------------------------------- 105 (149)
T 2fl4_A 71 VWLDRFLIDQRFQGQGYGKAACRLLMLKLIEKYQ-T-------------------------------------------- 105 (149)
T ss_dssp EEEEEEEECGGGTTSSHHHHHHHHHHHHHHHHSS-C--------------------------------------------
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHHHHhCC-C--------------------------------------------
Confidence 5788999999999999999999999987642110 0
Q ss_pred ccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCC
Q 003262 496 ERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLH 549 (835)
Q Consensus 496 e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~ 549 (835)
.. =++.| +--+....+||+|+||..+..... .|+ .+|...+.
T Consensus 106 ----~~-i~l~v-~~~N~~a~~~Y~k~GF~~~g~~~~----~g~--~~~~~~~~ 147 (149)
T 2fl4_A 106 ----NK-LYLSV-YDTNSSAIRLYQQLGFVFNGELDT----NGE--RVMEWTHQ 147 (149)
T ss_dssp ----SE-EEEEE-CTTCHHHHHHHHHTTCEEEEEECT----TSC--EEEEEECC
T ss_pred ----CE-EEEEE-ECCCHHHHHHHHHCCCEEeccccc----CCc--EEEEEEec
Confidence 00 01222 233688999999999999877653 353 56666553
No 92
>3e0k_A Amino-acid acetyltransferase; N-acetylglutamate synthase, structu genomics, PSI-2, protein structure initiative; HET: MSE; 2.52A {Vibrio parahaemolyticus}
Probab=98.04 E-value=3.4e-06 Score=77.17 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=27.9
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.+.|.+|+|||+|||+|||+++++.+.+++.
T Consensus 68 ~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~ 98 (150)
T 3e0k_A 68 KAEMACVAIHPDYRDGNRGLLLLNYMKHRSK 98 (150)
T ss_dssp EEEEEEEEECGGGCSSSHHHHHHHHHHHHHH
T ss_pred eEEEEEEEECHHHhccCHHHHHHHHHHHHHH
Confidence 3678899999999999999999999998864
No 93
>2pr1_A Uncharacterized N-acetyltransferase YLBP; YIBP protein, coenzyme A, structural GE PSI-2, protein structure initiative; HET: SUC COA; 3.20A {Bacillus subtilis}
Probab=98.04 E-value=3.7e-06 Score=79.75 Aligned_cols=72 Identities=18% Similarity=0.336 Sum_probs=55.0
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccc
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHL 494 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l 494 (835)
.+.|.+|+|+|+|||+|||+++|+.+.++ | .
T Consensus 82 ~~~i~~l~V~p~~rg~GiG~~Ll~~~~~~--g-~---------------------------------------------- 112 (163)
T 2pr1_A 82 YLELWKLEVLPGYQNRGYGRALVEFAKSF--K-M---------------------------------------------- 112 (163)
T ss_dssp EEEEEEEEECTTSTTSSHHHHHHHHHHTT--C-S----------------------------------------------
T ss_pred EEEEEEEEECHHHcCCCHHHHHHHHHHHc--C-c----------------------------------------------
Confidence 47899999999999999999999987651 1 0
Q ss_pred cccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccC
Q 003262 495 RERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPL 548 (835)
Q Consensus 495 ~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L 548 (835)
.+.+. . +....+||+|+||.++.....+. .|++..+|-+..
T Consensus 113 ---------~l~~~-~-~n~a~~fY~k~GF~~~~~~~~~~--~g~~~~~~~~~~ 153 (163)
T 2pr1_A 113 ---------PIRTN-P-RMKSAEFWNKMNFKTVKYDMARD--KGEDPLIWHPDM 153 (163)
T ss_dssp ---------CEEEC-C-CGGGHHHHHHTTCEECCCCHHHH--TTCCCEEECSSS
T ss_pred ---------EEEEe-c-CchHHHHHHHcCCEEeeeEeecc--CCeEEEEEeECC
Confidence 01111 1 22689999999999998877765 688888887654
No 94
>3qb8_A A654L protein; GNAT N-acetyltransferase, acetyltransferase, COA, spermine, spermidine, transferase; HET: COA; 1.50A {Paramecium bursaria chlorella virus 1}
Probab=98.03 E-value=1.3e-05 Score=75.89 Aligned_cols=62 Identities=11% Similarity=0.080 Sum_probs=48.2
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccc
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLR 495 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~ 495 (835)
.+|..|+|+|+|||+|||+++++.+.++....
T Consensus 108 ~~l~~l~V~p~~rg~Gig~~Ll~~~~~~a~~~------------------------------------------------ 139 (197)
T 3qb8_A 108 KCLYVFAIGSEVTGKGLATKLLKKTIEESSSH------------------------------------------------ 139 (197)
T ss_dssp CEEEEEEEEESSCSSSHHHHHHHHHHHHHHHT------------------------------------------------
T ss_pred eeceEEEECHHHcCCCHHHHHHHHHHHHHHHc------------------------------------------------
Confidence 35669999999999999999999999887421
Q ss_pred ccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeee
Q 003262 496 ERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQ 531 (835)
Q Consensus 496 e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq 531 (835)
++.++-+. --+....+||+|+||.++....
T Consensus 140 -----g~~~i~l~-~~n~~a~~~y~k~GF~~~~~~~ 169 (197)
T 3qb8_A 140 -----GFKYIYGD-CTNIISQNMFEKHGFETVGSVK 169 (197)
T ss_dssp -----TCCEEEEE-ECSHHHHHHHHHTTCEEEEEEE
T ss_pred -----CCCEEEEE-cCCHHHHHHHHHCCCeEEEEEE
Confidence 22223222 1478999999999999998776
No 95
>3i9s_A Integron cassette protein; oyster POND, woods HOLE, acetyltransferase, structural genomics, PSI-2, protein structure initiative; 2.20A {Vibrio cholerae}
Probab=98.02 E-value=9.1e-05 Score=69.70 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=28.7
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|..|+|+|+|||+|||+++++.+.+++.
T Consensus 102 ~~~~i~~~~V~p~~rg~Gig~~ll~~~~~~a~ 133 (183)
T 3i9s_A 102 GQMYMKDLFVSSSARGKGIGLQLMKHLATIAI 133 (183)
T ss_dssp EEEEEEEEEECGGGTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEeEEECHhhcCCCHHHHHHHHHHHHHH
Confidence 34788899999999999999999999998874
No 96
>2pc1_A Acetyltransferase, GNAT family; NP_688560.1, structural genom joint center for structural genomics, JCSG; HET: MSE; 1.28A {Streptococcus agalactiae 2603V}
Probab=98.02 E-value=1.9e-05 Score=75.85 Aligned_cols=78 Identities=10% Similarity=-0.105 Sum_probs=57.8
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccc
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVH 493 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~ 493 (835)
..+.|..|+|||+|||+|||+++++.+.+ -.| ...
T Consensus 110 ~~~~i~~l~V~p~~rg~Gig~~Ll~~~~~-~~g-~~~------------------------------------------- 144 (201)
T 2pc1_A 110 RYLTFHRIAISNQFRGRGLAQTFLQGLIE-GHK-GPD------------------------------------------- 144 (201)
T ss_dssp CEEEEEEEEECSTTCSSHHHHHHHHHHHH-HSC-CSE-------------------------------------------
T ss_pred cEEEEEEEEECHHHhCCCHHHHHHHHHHH-hCC-Cce-------------------------------------------
Confidence 56789999999999999999999998876 111 000
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCCcc
Q 003262 494 LRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHSE 551 (835)
Q Consensus 494 l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~~~ 551 (835)
=++. .+--+....+||+|+||..+...... ....+|-|.|+..
T Consensus 145 ---------i~l~-v~~~N~~a~~~y~k~GF~~~~~~~~~-----~~~~~~~k~l~~~ 187 (201)
T 2pc1_A 145 ---------FRCD-THEKNVTMQHILNKLGYQYCGKVPLD-----GVRLAYQKIKEKG 187 (201)
T ss_dssp ---------EEEE-ECTTCHHHHHHHHHTTCEEEEEECSS-----SCEEEEEEECCC-
T ss_pred ---------EEEE-EecCCHHHHHHHHHCCCEEEEEEEec-----cchhhhHHHhccc
Confidence 0122 22336889999999999998876433 6788999999754
No 97
>2q0y_A GCN5-related N-acetyltransferase; YP_295895.1, acetyltransferase (GNAT) family, structural genomics, joint center for ST genomics; HET: MSE; 1.80A {Ralstonia eutropha JMP134}
Probab=98.02 E-value=7.1e-06 Score=76.03 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=28.2
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.+.|.+|+|||+|||+|+|+++|+.+.++..
T Consensus 87 ~~~i~~l~V~p~~rg~GiG~~Ll~~~~~~a~ 117 (153)
T 2q0y_A 87 RGYILNLYVDPSHRERGIGQALMNRAEAEFA 117 (153)
T ss_dssp EEEEEEEEECGGGCSSSHHHHHHHHHHHHHH
T ss_pred cEEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999988764
No 98
>3t90_A Glucose-6-phosphate acetyltransferase 1; GNAT fold, glcnac biosynthesis, alpha/beta protein; HET: EPE; 1.50A {Arabidopsis thaliana}
Probab=98.00 E-value=5.7e-06 Score=74.42 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=28.4
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.+.|..|+|||+|||+|||+++++.+.+++.
T Consensus 83 ~~~i~~~~V~p~~rg~Gig~~ll~~~~~~~~ 113 (149)
T 3t90_A 83 AGHIEDVVVDSRFRGKQLGKKVVEFLMDHCK 113 (149)
T ss_dssp EEEEEEEEECGGGTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECHHHhCCcHHHHHHHHHHHHHH
Confidence 4689999999999999999999999998874
No 99
>2k5t_A Uncharacterized protein YHHK; N-acetyl transferase, COA, bound ligand, coenzyme A, structural genomics, PSI-2, protein structure initiative; HET: COA; NMR {Escherichia coli K12}
Probab=97.99 E-value=9.5e-06 Score=73.89 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=26.9
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHH
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYY 444 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~ 444 (835)
+.|.+|+|||+|||+|+|+++|+.+.+++
T Consensus 61 ~~i~~l~V~p~~rg~GiG~~Ll~~~~~~~ 89 (128)
T 2k5t_A 61 GALDSLRVREVTRRRGVGQYLLEEVLRNN 89 (128)
T ss_dssp EEEEEEEECTTCSSSSHHHHHHHHHHHHS
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHh
Confidence 68999999999999999999999988765
No 100
>1yr0_A AGR_C_1654P, phosphinothricin acetyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.00A {Agrobacterium tumefaciens str} SCOP: d.108.1.1
Probab=97.98 E-value=2.1e-05 Score=74.13 Aligned_cols=77 Identities=13% Similarity=0.060 Sum_probs=54.6
Q ss_pred EEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccccc
Q 003262 418 IVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRER 497 (835)
Q Consensus 418 IVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~ 497 (835)
+.+++|+|+|||+|||+++++.+.++.....
T Consensus 86 ~~~~~V~p~~rg~Gig~~ll~~~~~~a~~~g------------------------------------------------- 116 (175)
T 1yr0_A 86 EHSVYVHKDARGHGIGKRLMQALIDHAGGND------------------------------------------------- 116 (175)
T ss_dssp EEEEEECTTSTTSSHHHHHHHHHHHHHHTTT-------------------------------------------------
T ss_pred EEEEEECccccCCCHHHHHHHHHHHHHHhCC-------------------------------------------------
Confidence 4689999999999999999999999874211
Q ss_pred CCCCcc--eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCC--ceEEEEccC
Q 003262 498 QPEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGE--HTCMVLKPL 548 (835)
Q Consensus 498 ~~~~lD--ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGE--hS~IMlr~L 548 (835)
+. ++.| .--+....+||+|+||.++..........|+ +.++|-+.+
T Consensus 117 ----~~~i~l~v-~~~N~~a~~~y~k~GF~~~g~~~~~~~~~g~~~d~~~~~~~~ 166 (175)
T 1yr0_A 117 ----VHVLIAAI-EAENTASIRLHESLGFRVVGRFSEVGTKFGRWLDLTCMELKL 166 (175)
T ss_dssp ----CCEEEEEE-ETTCHHHHHHHHHTTCEEEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ----ccEEEEEe-cCCCHHHHHHHHHCCCEEEEEcccccccCCEEEEHHHHHHHH
Confidence 11 1222 2237899999999999999876554434563 456665544
No 101
>2bei_A Diamine acetyltransferase 2; SSAT2, BC011751, AAH11751, thialysine N-acetyltransferase, structural genomics, protein structure initiative, PSI; HET: ACO; 1.84A {Homo sapiens} SCOP: d.108.1.1 PDB: 2q4v_A*
Probab=97.97 E-value=1.2e-05 Score=76.36 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=28.1
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.+.|.+|+|+|+|||+|||+++|+.+.++..
T Consensus 88 ~~~i~~l~V~p~~rg~GiG~~Ll~~~~~~a~ 118 (170)
T 2bei_A 88 TIYLEDIYVMPEYRGQGIGSKIIKKVAEVAL 118 (170)
T ss_dssp EEEEEEEEECGGGCSSSHHHHHHHHHHHHHH
T ss_pred cEEEEEEEEChHhcCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999998764
No 102
>1ufh_A YYCN protein; alpha and beta, fold, acetyltransferase, structural genomics, PSI, protein structure initiative; 2.20A {Bacillus subtilis subsp} SCOP: d.108.1.1
Probab=97.96 E-value=6.3e-05 Score=70.46 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=29.0
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|..++|+|+|||+|||+++++.+.+++.
T Consensus 111 ~~~~i~~~~V~p~~rg~Gig~~ll~~~~~~~~ 142 (180)
T 1ufh_A 111 QEAFIYDFGLYEPYRGKGYAKQALAALDQAAR 142 (180)
T ss_dssp CEEEEEEEEECGGGCSSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEECHhhcCCChHHHHHHHHHHHHH
Confidence 45789999999999999999999999998874
No 103
>3frm_A Uncharacterized conserved protein; APC61048, staphylococcus epidermidis ATCC structural genomics, PSI-2, protein structure initiative; HET: MES; 2.32A {Staphylococcus epidermidis}
Probab=97.95 E-value=3.5e-05 Score=79.12 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=27.4
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHH
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYY 444 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~ 444 (835)
+.|.+|+|+|+|||+|||+++++.+.++.
T Consensus 188 ~~i~~l~V~p~~Rg~GiG~~Ll~~~~~~a 216 (254)
T 3frm_A 188 IEIDGFGVLEEFQHQGIGSEIQAYVGRMA 216 (254)
T ss_dssp EEEEEEEECGGGTTSSHHHHHHHHHHHHH
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHh
Confidence 79999999999999999999999998875
No 104
>3d3s_A L-2,4-diaminobutyric acid acetyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: MSE; 1.87A {Bordetella parapertussis 12822}
Probab=97.95 E-value=3.3e-05 Score=73.63 Aligned_cols=89 Identities=17% Similarity=0.050 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhc--ccCCChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCC
Q 003262 315 ELFLQRMMALYVSS--HYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQP 392 (835)
Q Consensus 315 E~fLq~~~aLlV~A--HYkNsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp 392 (835)
+.=+..++.|+..+ ......-+.....+.+....||+..+ + .+++|.+.+....
T Consensus 34 ~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~---g~ivG~~~~~~~~----------------- 89 (189)
T 3d3s_A 34 RNDGAAIHQLVSECPPLDLNSLYAYLLLCEHHAHTCVVAESP----G---GRIDGFVSAYLLP----------------- 89 (189)
T ss_dssp GGGHHHHHHHHHTSTTSCCCCHHHHHHHHHHCGGGCEEEECT----T---SCEEEEEEEEECS-----------------
T ss_pred hhHHHHHHHHHHHccccCchhhHHHHHhccCCCceEEEEECC----C---CEEEEEEEEEEcC-----------------
Confidence 33455667777664 22233334333344456666776521 1 3789988776432
Q ss_pred CCCchhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 393 SGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 393 ~GdLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..-..+.|..|+|||+|||+|||+++++.+.++..
T Consensus 90 ------------------~~~~~~~i~~l~V~p~~rg~Gig~~Ll~~~~~~a~ 124 (189)
T 3d3s_A 90 ------------------TRPDVLFVWQVAVHSRARGHRLGRAMLGHILERQE 124 (189)
T ss_dssp ------------------SCTTEEEEEEEEECGGGTTSCHHHHHHHHHHHSGG
T ss_pred ------------------CCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 01134678899999999999999999999987653
No 105
>1m4i_A Aminoglycoside 2'-N-acetyltransferase; COA binding motif; HET: COA KAN PAP; 1.50A {Mycobacterium tuberculosis} SCOP: d.108.1.1 PDB: 1m4d_A* 1m4g_A* 1m44_A*
Probab=97.92 E-value=3.1e-06 Score=79.91 Aligned_cols=135 Identities=13% Similarity=0.089 Sum_probs=85.2
Q ss_pred HHHHHHHHhc-ccCCChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCch
Q 003262 319 QRMMALYVSS-HYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQI 397 (835)
Q Consensus 319 q~~~aLlV~A-HYkNsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLI 397 (835)
..+..|+..+ ...-+++++..+.+ ..++|+ .. + .+++|.+.+..... . ..+
T Consensus 22 ~~i~~l~~~~~~~~~~~~~~~~~~~--~~~~~v-~~-----~---~~~vG~~~~~~~~~-~-------------~~~--- 73 (181)
T 1m4i_A 22 QDIRQMVTGAFAGDFTETDWEHTLG--GMHALI-WH-----H---GAIIAHAAVIQRRL-I-------------YRG--- 73 (181)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHTCS--SEEEEE-EE-----T---TEEEEEEEEEEEEE-E-------------ETT---
T ss_pred HHHHHHHHHHcccccCHHHHHhhcC--CcEEEE-EE-----C---CEEEEEEEEEEecc-c-------------cCC---
Confidence 5555555432 22346678887776 455666 51 1 36888887754310 0 000
Q ss_pred hHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcc
Q 003262 398 PWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLL 477 (835)
Q Consensus 398 Pw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~ 477 (835)
.....+.|..++|+|+|||+|||+++++.+.++....+
T Consensus 74 -------------~~~~~~~i~~l~V~p~~rg~Gig~~Ll~~~~~~a~~~~----------------------------- 111 (181)
T 1m4i_A 74 -------------NALRCGYVEGVAVRADWRGQRLVSALLDAVEQVMRGAY----------------------------- 111 (181)
T ss_dssp -------------EEEEEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHHC-----------------------------
T ss_pred -------------CCcceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCc-----------------------------
Confidence 00134678999999999999999999999998864200
Q ss_pred cccccCCCCCCcccccccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCC----ceEEEEccCCc
Q 003262 478 EENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGE----HTCMVLKPLHS 550 (835)
Q Consensus 478 ~e~i~~r~~~ppLl~~l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGE----hS~IMlr~L~~ 550 (835)
++.|.. -+....+||+|+||.++..........|. +..+|.+.|..
T Consensus 112 --------------------------~l~~~~-~n~~a~~~y~k~GF~~~~~~~~~~~~~g~~~~~d~~~m~~~l~~ 161 (181)
T 1m4i_A 112 --------------------------QLGALS-SSARARRLYASRGWLPWHGPTSVLAPTGPVRTPDDDGTVFVLPI 161 (181)
T ss_dssp --------------------------SEEEEE-CCTTTHHHHHHTTCEECCSCEEEEETTEEEECGGGTTTEEEEES
T ss_pred --------------------------EEEEec-CCHHHHHHHHhcCCEEcCCcceeEeccccccccCCceeEEEccc
Confidence 011111 15688999999999998876655444453 35678777764
No 106
>2bue_A AAC(6')-IB; GNAT, transferase, aminoglycoside, fluoroquinolone, acetyltransferase, antibiotic resistance; HET: COA RIO; 1.7A {Escherichia coli} PDB: 1v0c_A* 2vqy_A* 2prb_A* 2qir_A* 2pr8_A*
Probab=97.91 E-value=4e-05 Score=72.58 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=58.3
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccc
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVH 493 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~ 493 (835)
..+.|..++|+|+|||+|||+++++.+.++...+.
T Consensus 113 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~a~~~~--------------------------------------------- 147 (202)
T 2bue_A 113 GVRGIDQLLANASQLGKGLGTKLVRALVELLFNDP--------------------------------------------- 147 (202)
T ss_dssp TEEEEEEEESCGGGTTSSHHHHHHHHHHHHHHTST---------------------------------------------
T ss_pred CceEEEEEEEChhhccCChHHHHHHHHHHHHHhCC---------------------------------------------
Confidence 45789999999999999999999999998864210
Q ss_pred ccccCCCCcceEEE-ecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCC
Q 003262 494 LRERQPEKLNYIGV-SFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLH 549 (835)
Q Consensus 494 l~e~~~~~lDylGv-SFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~ 549 (835)
++..+.+ .+--+....+||+|+||.++...... .| ..++|.+.++
T Consensus 148 -------g~~~i~~~v~~~N~~a~~~y~k~GF~~~~~~~~~---~g-~~~~m~~~~~ 193 (202)
T 2bue_A 148 -------EVTKIQTDPSPSNLRAIRCYEKAGFERQGTVTTP---DG-PAVYMVQTRQ 193 (202)
T ss_dssp -------TCCEEEECCCTTCHHHHHHHHHTTCEEEEEEEET---TE-EEEEEEEEHH
T ss_pred -------CCcEEEeCcccCCHHHHHHHHHcCCEEeeeecCC---CC-ceEEEEeehh
Confidence 1111111 12236889999999999999877653 24 6788887653
No 107
>2vi7_A Acetyltransferase PA1377; GNAT, GCN5 family, N-acetyltransferase, hypothetical protein; 2.25A {Pseudomonas aeruginosa}
Probab=97.90 E-value=1.6e-05 Score=75.36 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=57.2
Q ss_pred EEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccC
Q 003262 419 VRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQ 498 (835)
Q Consensus 419 VRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~ 498 (835)
+.|+|+|+|||+|||+++++.+.++...+.
T Consensus 89 ~~~~v~p~~rg~Gig~~ll~~~~~~a~~~~-------------------------------------------------- 118 (177)
T 2vi7_A 89 IGMGVAVAWQGKGVGSRLLGELLDIADNWM-------------------------------------------------- 118 (177)
T ss_dssp CTTCCEESSTTTTHHHHHHHHHHHHHHHTS--------------------------------------------------
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHhcC--------------------------------------------------
Confidence 378999999999999999999999874211
Q ss_pred CCCcc--eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCC--ceEEEEccCC
Q 003262 499 PEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGE--HTCMVLKPLH 549 (835)
Q Consensus 499 ~~~lD--ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGE--hS~IMlr~L~ 549 (835)
+++ ++.| +--+....+||+|+||..+..........|+ +.++|-+.+.
T Consensus 119 --~~~~i~l~v-~~~N~~a~~~Yek~GF~~~g~~~~~~~~~g~~~d~~~~~~~~~ 170 (177)
T 2vi7_A 119 --NLRRVELTV-YTDNAPALALYRKFGFETEGEMRDYAVRDGRFVDVYSMARLRR 170 (177)
T ss_dssp --CCSEEEEEE-ETTCHHHHHHHHHTTCEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred --CeEEEEEEE-ECCCHHHHHHHHHCCCEEEeeecccEEECCEEEEEEEeeeeec
Confidence 011 1222 2337899999999999999987766545675 5677776654
No 108
>1i12_A Glucosamine-phosphate N-acetyltransferase; GNAT, alpha/beta; HET: ACO; 1.30A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 1i1d_A* 1i21_A
Probab=97.87 E-value=1.4e-05 Score=74.88 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=27.5
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
+.|.+|+|||+|||+|||+++++.+.++..
T Consensus 96 ~~i~~~~V~~~~rg~Gig~~ll~~~~~~a~ 125 (160)
T 1i12_A 96 GHIEDIAVNSKYQGQGLGKLLIDQLVTIGF 125 (160)
T ss_dssp EEEEEEEECGGGTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999998764
No 109
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=97.87 E-value=6.5e-06 Score=92.12 Aligned_cols=80 Identities=15% Similarity=0.250 Sum_probs=61.2
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccc
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVH 493 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~ 493 (835)
..+.|.+++|||+|||+|||+++++.+.+++...
T Consensus 370 ~~~~I~~l~V~p~~rg~GiG~~Ll~~~~~~a~~~---------------------------------------------- 403 (456)
T 3d2m_A 370 DCGEIACLAVSPQAQDGGYGERLLAHIIDKARGI---------------------------------------------- 403 (456)
T ss_dssp TEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHT----------------------------------------------
T ss_pred CEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHc----------------------------------------------
Confidence 3478999999999999999999999999876421
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEe------eecccCCCCCceEEEEccCC
Q 003262 494 LRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYV------SQNANAVTGEHTCMVLKPLH 549 (835)
Q Consensus 494 l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVyl------rq~~ne~TGEhS~IMlr~L~ 549 (835)
++..+-+. |....+||+|+||.++.. ++..+...|..+.+|.|+|.
T Consensus 404 -------g~~~i~l~---N~~a~~fY~k~GF~~~~~~~~p~~~~~~y~~~~r~~~v~~k~L~ 455 (456)
T 3d2m_A 404 -------GISRLFAL---STNTGEWFAERGFQTASEDELPETRRKDYRSNGRNSHILVRRLH 455 (456)
T ss_dssp -------TCCEEEEE---ESSCHHHHHTTTCEEECGGGSCHHHHHHHHHHCCCCEEEEEECC
T ss_pred -------CCCEEEEE---cHHHHHHHHHCCCEEeCcccCCHHHHhhcccccCCeEEEEEEcC
Confidence 12222222 567899999999999986 33444556789999999985
No 110
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.86 E-value=0.00027 Score=78.43 Aligned_cols=151 Identities=13% Similarity=0.105 Sum_probs=93.0
Q ss_pred CccccccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcEEEecCChHhHHHHHHHH
Q 003262 49 VGPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA-GYSNIFVTAPSPENLKTLFEFV 127 (835)
Q Consensus 49 ~g~Lv~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~-g~~nI~VTAPs~enl~tlFef~ 127 (835)
-|.+.....+.-|...+..+ .. ++.+++..+|+-|||.++...+...+.. +-.+|+++||+.+.++.+|+.+
T Consensus 156 ~g~~~p~~L~p~Qk~il~~l----~~---~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i 228 (385)
T 2o0j_A 156 DYGVIKVQLRDYQRDMLKIM----SS---KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRT 228 (385)
T ss_dssp SSCEEECCCCHHHHHHHHHH----HH---SSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHhh----cc---CcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH
Confidence 34455667788888765443 21 3568999999999999876655443333 3468999999999999999888
Q ss_pred HhhhccccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccc-cccCCCcEEEEecccCCC--HHHHHHhh-
Q 003262 128 CKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEH-EKLAQVELLVIDEAAAIP--LPVVRSLL- 203 (835)
Q Consensus 128 ~kgl~~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~-~~l~~adLLvIDEAAAIP--lpllk~Ll- 203 (835)
..-++.+.. .....+...+ .. +|. + ..+.+|.+++-+.- ..=.+++++|+||+|.+| -.++..+.
T Consensus 229 ~~mi~~~P~--ll~~~~~~~~-----~~--~I~-f-~nGs~i~~lsa~~~slrG~~~~~viiDE~a~~~~~~el~~al~~ 297 (385)
T 2o0j_A 229 KQAIELLPD--FLQPGIVEWN-----KG--SIE-L-DNGSSIGAYASSPDAVRGNSFAMIYIEDCAFIPNFHDSWLAIQP 297 (385)
T ss_dssp HHHHHHSCT--TTSCCEEEEC-----SS--EEE-E-TTSCEEEEEECSHHHHHTSCCSEEEEESGGGSTTHHHHHHHHHH
T ss_pred HHHHHhChH--hhhhhhccCC-----cc--EEE-e-CCCCEEEEEECCCCCccCCCCCEEEechhhhcCCCHHHHHHHHH
Confidence 665544321 0000111110 00 111 2 23567777764211 122368999999999999 45555433
Q ss_pred --c--C-CeEEEEeeccCC
Q 003262 204 --G--P-YLVFLSSTVNGY 217 (835)
Q Consensus 204 --~--~-y~vflsSTi~GY 217 (835)
. + ..+++.||-.|.
T Consensus 298 ~ls~~~~~kiiiiSTP~g~ 316 (385)
T 2o0j_A 298 VISSGRRSKIIITTTPNGL 316 (385)
T ss_dssp HHHSTTCCEEEEEECCCSS
T ss_pred HhhcCCCCcEEEEeCCCCc
Confidence 2 2 367778887765
No 111
>3te4_A GH12636P, dopamine N acetyltransferase, isoform A; dopamine/acetyl COA, N-acetyltransferase domain; HET: ACO; 1.46A {Drosophila melanogaster} PDB: 3v8i_A*
Probab=97.84 E-value=5.8e-05 Score=74.25 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=28.7
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.+.|.+|||+|+|||+|+|+++++.+.++..
T Consensus 125 ~~~i~~~~v~p~~rg~Gig~~L~~~~~~~~~ 155 (215)
T 3te4_A 125 ILDGKILSVDTNYRGLGIAGRLTERAYEYMR 155 (215)
T ss_dssp EEEEEEEEECGGGTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECHHHhCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999999999988764
No 112
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.82 E-value=0.00019 Score=72.64 Aligned_cols=139 Identities=18% Similarity=0.211 Sum_probs=85.0
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-cC---CCcEEEecCChHhHHHHHHHHHhhhc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA-AG---YSNIFVTAPSPENLKTLFEFVCKGFN 132 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~-~g---~~nI~VTAPs~enl~tlFef~~kgl~ 132 (835)
.+.-|.+++..+.+ .+.+++.|+.|.|||+++-+.+..... .+ ...+++++|+.+-..++++.+.+.+.
T Consensus 62 ~~~~q~~~i~~i~~-------g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~ 134 (235)
T 3llm_A 62 VKKFESEILEAISQ-------NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERG 134 (235)
T ss_dssp GGGGHHHHHHHHHH-------CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHhc-------CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhc
Confidence 45678877765433 357899999999999988877665443 33 23799999999999999888765543
Q ss_pred cccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc-----ccCCCcEEEEecccCCCH------HHHHH
Q 003262 133 AIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE-----KLAQVELLVIDEAAAIPL------PVVRS 201 (835)
Q Consensus 133 ~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~-----~l~~adLLvIDEAAAIPl------pllk~ 201 (835)
.- ......|.+-.. .........|-+..|.-+. .+.+.++||||||=...+ ..++.
T Consensus 135 ~~-~~~~~g~~~~~~------------~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~ 201 (235)
T 3llm_A 135 EE-PGKSCGYSVRFE------------SILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLLVVLRD 201 (235)
T ss_dssp CC-TTSSEEEEETTE------------EECCCSSSEEEEEEHHHHHHHHHHCCTTCCEEEECCTTSCCHHHHHHHHHHHH
T ss_pred cc-cCceEEEeechh------------hccCCCCCeEEEECHHHHHHHHHhhhcCCcEEEEECCccCCcchHHHHHHHHH
Confidence 21 011111111000 0000112345566664331 257899999999976433 35566
Q ss_pred hhc--C--CeEEEEeecc
Q 003262 202 LLG--P--YLVFLSSTVN 215 (835)
Q Consensus 202 Ll~--~--y~vflsSTi~ 215 (835)
++. + .+++||.|+.
T Consensus 202 i~~~~~~~~~il~SAT~~ 219 (235)
T 3llm_A 202 VVQAYPEVRIVLMSATID 219 (235)
T ss_dssp HHHHCTTSEEEEEECSSC
T ss_pred HHhhCCCCeEEEEecCCC
Confidence 653 2 2677888875
No 113
>1yvk_A Hypothetical protein BSU33890; ALPHS-beta protein, structural genomics, PSI, protein structure initiative; HET: COA; 3.01A {Bacillus subtilis subsp} SCOP: d.108.1.1
Probab=97.81 E-value=3e-05 Score=73.31 Aligned_cols=84 Identities=15% Similarity=0.115 Sum_probs=58.1
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccc
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHL 494 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l 494 (835)
.+.|..|+|+|+|||+|||+++++.+.+++......
T Consensus 63 ~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~~~~~g~~-------------------------------------------- 98 (163)
T 1yvk_A 63 TVEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLGAD-------------------------------------------- 98 (163)
T ss_dssp EEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTCS--------------------------------------------
T ss_pred eEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCC--------------------------------------------
Confidence 578999999999999999999999999886422100
Q ss_pred cccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccC--------CCCCceEEEEccCCc
Q 003262 495 RERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANA--------VTGEHTCMVLKPLHS 550 (835)
Q Consensus 495 ~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne--------~TGEhS~IMlr~L~~ 550 (835)
. =++.+ ..-+....+||+|+||.++.....+.. -.|-.-+.|.+++..
T Consensus 99 ------~-i~l~~-~~~n~~a~~~y~k~GF~~~~~~~~~~~~~~~~~~~~~g~~~~~m~~~~~~ 154 (163)
T 1yvk_A 99 ------T-IEIGT-GNSSIHQLSLYQKCGFRIQAIDHDFFLRHYDEDIFENGIQCRDMVRLYLD 154 (163)
T ss_dssp ------E-EEEEE-ETTCHHHHHHHHHTTCEEEEEETTHHHHSCSSCEEETTEEECCEEEEEEE
T ss_pred ------E-EEEEc-CCCCHHHHHHHHHCCCEEeceehhhhhccCchhhhhccchhhHHHHHHHH
Confidence 0 01111 223567999999999999987765421 135455667766543
No 114
>3c26_A Putative acetyltransferase TA0821; NP_394282.1, A putative acetyltransferase, acetyltransferase family, structural genomics; 2.00A {Thermoplasma acidophilum dsm 1728}
Probab=97.80 E-value=2.5e-05 Score=81.44 Aligned_cols=85 Identities=12% Similarity=0.156 Sum_probs=62.4
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccc
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVH 493 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~ 493 (835)
..+.|..++|||+|||+|||+++++.+.+++...
T Consensus 83 ~~~~I~~l~V~p~~rg~GiG~~Ll~~~~~~a~~~---------------------------------------------- 116 (266)
T 3c26_A 83 GSVMLGGLRVHPEYRGSRLGMSIMQETIQFLRGK---------------------------------------------- 116 (266)
T ss_dssp SCEEEEEEEECGGGTTSSHHHHHHHHHHHHHBTT----------------------------------------------
T ss_pred CeEEEEEEEEChhhcCCCHHHHHHHHHHHHHHHc----------------------------------------------
Confidence 3578999999999999999999999999876411
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCCcc
Q 003262 494 LRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHSE 551 (835)
Q Consensus 494 l~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~~~ 551 (835)
+++.+....--+....+||+|+||.++.....+....|+....+.++++..
T Consensus 117 -------g~~~il~v~~~N~~a~~~Yek~GF~~~~~~~~~~~~~~~~~~~~~~~~~e~ 167 (266)
T 3c26_A 117 -------TERLRSAVYSWNEPSLRLVHRLGFHQVEEYPIYTFQGGSTAVPALKPVNER 167 (266)
T ss_dssp -------BSEEEEEEETTCHHHHHHHHHHTCEEEEEEEEEEEEECC----CCCCEEEE
T ss_pred -------CCCEEEEEcCCCHHHHHHHHHCCCEEeeEEEeeecCCccccccccCCcChh
Confidence 122221112236889999999999999998888777778888888887653
No 115
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.80 E-value=9.4e-05 Score=86.17 Aligned_cols=67 Identities=24% Similarity=0.226 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHh
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~k 129 (835)
..+.+|.+|+..++. +..++|+|+.|.|||+++--.++.++.....+|+|||||..++..+.+-+.+
T Consensus 180 ~ln~~Q~~av~~~l~-------~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQ-------RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCHHHHHHHHHHHT-------CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhc-------CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 357899999876542 3578999999999999987777766654557899999999999999887653
No 116
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.78 E-value=0.00012 Score=85.49 Aligned_cols=68 Identities=24% Similarity=0.353 Sum_probs=56.7
Q ss_pred ccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHH
Q 003262 54 KKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVC 128 (835)
Q Consensus 54 ~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~ 128 (835)
+-.....|.+||...+. . +...+|.|+.|.|||+++--.|+.++..| .+|+|||||-.++..+.+-+.
T Consensus 187 ~~~LN~~Q~~AV~~al~---~---~~~~lI~GPPGTGKT~ti~~~I~~l~~~~-~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 187 NTCLDTSQKEAVLFALS---Q---KELAIIHGPPGTGKTTTVVEIILQAVKQG-LKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp STTCCHHHHHHHHHHHH---C---SSEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc---C---CCceEEECCCCCCHHHHHHHHHHHHHhCC-CeEEEEcCchHHHHHHHHHHH
Confidence 34568899999986653 2 34788999999999999988888888887 589999999999999988764
No 117
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.77 E-value=0.00013 Score=87.78 Aligned_cols=66 Identities=24% Similarity=0.246 Sum_probs=53.8
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHh
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~k 129 (835)
.+.+|.+|+..++. +..++|+|+.|.|||+++--.++.++.....+|+|||||..++..|.+-+.+
T Consensus 357 Ln~~Q~~Av~~~l~-------~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQ-------RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCHHHHHHHHHHHT-------SSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhcc-------CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 57899999876542 3578999999999999987777766654557899999999999999987653
No 118
>1on0_A YYCN protein; structural genomics, alpha-beta protein with anti-parallel B strands, PSI, protein structure initiative; 2.20A {Bacillus subtilis} SCOP: d.108.1.1
Probab=97.73 E-value=4.3e-05 Score=71.39 Aligned_cols=31 Identities=19% Similarity=0.125 Sum_probs=28.1
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.+.|.+|+|+|+|||+|||+++++.+.++..
T Consensus 88 ~~~i~~~~v~~~~rg~G~g~~ll~~~~~~a~ 118 (158)
T 1on0_A 88 EAFIYDFGLYEPYRGKGYAKQALAALDQAAR 118 (158)
T ss_dssp EEEEEEEEECGGGCSSSHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEChhhcCCCHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999874
No 119
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.72 E-value=0.00031 Score=72.79 Aligned_cols=145 Identities=12% Similarity=0.013 Sum_probs=88.6
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
...+..|.+|+..+++. ...+|.|+.|.|||.+.-+.+...+..|..+++|.+|+.+-+....+-+.+-+.
T Consensus 112 ~~l~~~Q~~ai~~~l~~-------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~-- 182 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRL-- 182 (282)
T ss_dssp CCCCHHHHHHHHHHHHH-------SEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTS--
T ss_pred cCccHHHHHHHHHHHhc-------CCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcc--
Confidence 46788899998876652 235789999999999886665556666666899999998877766655443211
Q ss_pred cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc-----ccCCCcEEEEecccCCCHHHHHHhhc-----
Q 003262 135 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE-----KLAQVELLVIDEAAAIPLPVVRSLLG----- 204 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~-----~l~~adLLvIDEAAAIPlpllk~Ll~----- 204 (835)
........+.+....... ......|....|+.+. .+...+++|||||=.+.-+.+..++.
T Consensus 183 --~~~~~~~~~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~~~~~~il~~~~~~ 252 (282)
T 1rif_A 183 --FSHAMIKKIGGGASKDDK--------YKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIISGLNNC 252 (282)
T ss_dssp --CCGGGEEECSTTCSSTTC--------CCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCHHHHHHHTTTCTTC
T ss_pred --cccceEEEEeCCCcchhh--------hccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCCcccHHHHHHHhhcC
Confidence 111111111111111000 0011122222332221 23567999999999999888888875
Q ss_pred CCeEEEEeeccCCc
Q 003262 205 PYLVFLSSTVNGYE 218 (835)
Q Consensus 205 ~y~vflsSTi~GYE 218 (835)
.+++.||.|..+.+
T Consensus 253 ~~~l~lSATp~~~~ 266 (282)
T 1rif_A 253 MFKFGLSGSLRDGK 266 (282)
T ss_dssp CEEEEECSSCCTTS
T ss_pred CeEEEEeCCCCCcc
Confidence 33677899987544
No 120
>3igr_A Ribosomal-protein-S5-alanine N-acetyltransferase; fisch MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.00A {Vibrio fischeri} SCOP: d.108.1.0
Probab=97.71 E-value=0.00011 Score=68.60 Aligned_cols=69 Identities=10% Similarity=0.013 Sum_probs=50.8
Q ss_pred EEeeCcccccCChHHHHHHHHHHHH-hcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccC
Q 003262 420 RIATHPSAMRLGYGSTAVELLTRYY-EGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQ 498 (835)
Q Consensus 420 RIAvhPd~q~mGyGsraL~~L~~~~-~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~ 498 (835)
.+.|+|+|||+|||+++++.+.++. +...
T Consensus 100 ~~~v~~~~rg~Gig~~ll~~~~~~a~~~~g-------------------------------------------------- 129 (184)
T 3igr_A 100 GYSLDSEYQGKGIMRRAVNVTIDWMFKAQN-------------------------------------------------- 129 (184)
T ss_dssp EEEECGGGTTSSHHHHHHHHHHHHHHHTSC--------------------------------------------------
T ss_pred EEEEChhhccCcHHHHHHHHHHHHHHhhCC--------------------------------------------------
Confidence 4799999999999999999999987 3111
Q ss_pred CCCcce-EEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCce
Q 003262 499 PEKLNY-IGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHT 541 (835)
Q Consensus 499 ~~~lDy-lGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS 541 (835)
++. ....+--+....+||+|+||..+..........|+.-
T Consensus 130 ---~~~i~~~v~~~N~~a~~~y~k~GF~~~g~~~~~~~~~g~~~ 170 (184)
T 3igr_A 130 ---LHRIMAAYIPRNEKSAKVLAALGFVKEGEAKKYLYINGAWE 170 (184)
T ss_dssp ---CSEEEEEECTTCHHHHHHHHHTTCEEEEEEEEEEEETTEEE
T ss_pred ---ceEEEEEecCCCHHHHHHHHHcCCEeeeeehhhhhhCCeEE
Confidence 111 1112233789999999999999998877766667543
No 121
>3tth_A Spermidine N1-acetyltransferase; central intermediary metabolism; 3.30A {Coxiella burnetii}
Probab=97.68 E-value=0.00012 Score=67.52 Aligned_cols=68 Identities=24% Similarity=0.253 Sum_probs=50.7
Q ss_pred EEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccC
Q 003262 419 VRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQ 498 (835)
Q Consensus 419 VRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~ 498 (835)
+.++|+|+|||+|||+++++.+.++...+.
T Consensus 87 i~~~v~~~~rg~Gig~~ll~~~~~~a~~~~-------------------------------------------------- 116 (170)
T 3tth_A 87 FAIIISPGEEGKGYATEATDLTVEYAFSIL-------------------------------------------------- 116 (170)
T ss_dssp EEEEECTTSCSSCSHHHHHHHHHHHHHHTS--------------------------------------------------
T ss_pred EEEEECccccCCCHHHHHHHHHHHHHHhhC--------------------------------------------------
Confidence 468999999999999999999998863211
Q ss_pred CCCcc--eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCC
Q 003262 499 PEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGE 539 (835)
Q Consensus 499 ~~~lD--ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGE 539 (835)
+++ ++.| .--+....+||+|+||..+..........|+
T Consensus 117 --~~~~i~~~~-~~~N~~a~~~y~k~GF~~~g~~~~~~~~~g~ 156 (170)
T 3tth_A 117 --NLHKIYLLV-DEDNPAALHIYRKSGFAEEGKLVDEYYSKGR 156 (170)
T ss_dssp --CCCEEEEEE-ETTCHHHHHHHHTTTCEEEEEEEEEEEETTE
T ss_pred --CceEEEEEe-cCCCHHHHHHHHHCCCeEEEEEEEeEEECCE
Confidence 011 1222 2336889999999999999986666556776
No 122
>2q04_A Acetoin utilization protein; ZP_00540088.1, structural genom joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.33A {Exiguobacterium sibiricum}
Probab=97.67 E-value=0.00018 Score=72.97 Aligned_cols=73 Identities=12% Similarity=0.025 Sum_probs=48.5
Q ss_pred HHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHHhhccCCCCCCccc
Q 003262 337 LQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGA 416 (835)
Q Consensus 337 LqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~lsga 416 (835)
|..++..|.+++||+.. + .+|+|.+.+......+.. . .+ ....-+
T Consensus 52 l~~~~~~~~~~~~vA~~-----d---g~iVG~~~l~~~~~~~~~------~-----~~----------------~~~~~~ 96 (211)
T 2q04_A 52 LVEIAALEEGRIIIARQ-----G---NDIIGYVTFLYPDPYETW------S-----EG----------------NNPYIL 96 (211)
T ss_dssp HHHHHTSSSCEEEEEEE-----T---TEEEEEEEEECCCTTSGG------G-----CS----------------SCTTEE
T ss_pred HHHHHhCCCcEEEEEEE-----C---CEEEEEEEEEeCCccccc------c-----cc----------------cccceE
Confidence 44556678899988762 1 368998876543322210 0 00 011235
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHHHH
Q 003262 417 RIVRIATHPSAMRLGYGSTAVELLTRYY 444 (835)
Q Consensus 417 RIVRIAvhPd~q~mGyGsraL~~L~~~~ 444 (835)
.|.+|+|+|+|||+|+|++||+.+.++.
T Consensus 97 el~~i~V~p~~RG~GIG~~Ll~~~~~~a 124 (211)
T 2q04_A 97 ELGAIEVAARFRGQQIGKKLLEVSMLDP 124 (211)
T ss_dssp EEEEEEECGGGTTSCHHHHHHHHHHTSG
T ss_pred EEeEEEECHHHcCCCHHHHHHHHHHHHH
Confidence 6889999999999999999999987654
No 123
>2o28_A Glucosamine 6-phosphate N-acetyltransferase; structural genomics, structural genomics consortium, SGC; HET: 16G COA; 1.80A {Homo sapiens} PDB: 2huz_A* 3cxq_A* 3cxs_A 3cxp_A
Probab=97.63 E-value=5.5e-05 Score=71.62 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=28.1
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.+.|..|+|+|+|||+|||+++++.+.+++.
T Consensus 116 ~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~ 146 (184)
T 2o28_A 116 RGRVEDVVVSDECRGKQLGKLLLSTLTLLSK 146 (184)
T ss_dssp EEEEEEEEECGGGTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 4678899999999999999999999998874
No 124
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.62 E-value=0.00028 Score=72.21 Aligned_cols=134 Identities=17% Similarity=0.148 Sum_probs=78.8
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
...+..|.+|+..+++ + ..++|+|+.|.|||.+.-.++ ...+ .+++|.+|+.+-+..+.+.+.+ |
T Consensus 92 ~~l~~~Q~~ai~~~~~----~---~~~ll~~~tG~GKT~~a~~~~---~~~~-~~~liv~P~~~L~~q~~~~~~~-~--- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLV----D---KRGCIVLPTGSGKTHVAMAAI---NELS-TPTLIVVPTLALAEQWKERLGI-F--- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTT----T---SEEEEEESSSTTHHHHHHHHH---HHSC-SCEEEEESSHHHHHHHHHHHGG-G---
T ss_pred CCcCHHHHHHHHHHHh----C---CCEEEEeCCCCCHHHHHHHHH---HHcC-CCEEEEeCCHHHHHHHHHHHHh-C---
Confidence 4678899999876543 2 238999999999998743332 2333 5788899999877777665544 3
Q ss_pred cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc----cc-CCCcEEEEecccCCCHHHHHHhhc----C
Q 003262 135 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE----KL-AQVELLVIDEAAAIPLPVVRSLLG----P 205 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~----~l-~~adLLvIDEAAAIPlpllk~Ll~----~ 205 (835)
+... ..++.+.... . .. |....|+-+. .+ ...++||||||-.++-+..+.++. +
T Consensus 157 ~~~~---v~~~~g~~~~--~--~~----------i~v~T~~~l~~~~~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~~~ 219 (237)
T 2fz4_A 157 GEEY---VGEFSGRIKE--L--KP----------LTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAP 219 (237)
T ss_dssp CGGG---EEEESSSCBC--C--CS----------EEEEEHHHHHHTHHHHTTTCSEEEEECSSCCCTTTHHHHHHTCCCS
T ss_pred CCCe---EEEEeCCCCC--c--CC----------EEEEeHHHHHhhHHHhcccCCEEEEECCccCCChHHHHHHHhccCC
Confidence 2210 1111111110 0 01 1111122111 11 358999999999999877777653 4
Q ss_pred CeEEEEeeccCCccc
Q 003262 206 YLVFLSSTVNGYEGT 220 (835)
Q Consensus 206 y~vflsSTi~GYEGT 220 (835)
+++.||.|..-.+|-
T Consensus 220 ~~l~LSATp~r~D~~ 234 (237)
T 2fz4_A 220 FRLGLTATFEREDGR 234 (237)
T ss_dssp EEEEEEESCC-----
T ss_pred EEEEEecCCCCCCCC
Confidence 577889998766653
No 125
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.59 E-value=0.0011 Score=76.81 Aligned_cols=149 Identities=13% Similarity=0.107 Sum_probs=93.4
Q ss_pred ccccccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcEEEecCChHhHHHHHHHHH
Q 003262 50 GPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA-GYSNIFVTAPSPENLKTLFEFVC 128 (835)
Q Consensus 50 g~Lv~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~-g~~nI~VTAPs~enl~tlFef~~ 128 (835)
|.......+.-|...+..+ .. .+.+++.++||-|||+++...+...+.. +..+|+++||+.+.++.+|+.+.
T Consensus 157 g~~~~~~l~p~Q~~i~~~l----~~---~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~ 229 (592)
T 3cpe_A 157 YGVIKVQLRDYQRDMLKIM----SS---KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTK 229 (592)
T ss_dssp TBSBBCCCCHHHHHHHHHH----HH---CSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHH
T ss_pred CCcccCcCCHHHHHHHHhh----cc---ccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH
Confidence 3345556788888766544 11 3568999999999999887555444433 34589999999999999998876
Q ss_pred hhhccccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccc--cCCCcEEEEecccCCCH--HHHHHhh-
Q 003262 129 KGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEK--LAQVELLVIDEAAAIPL--PVVRSLL- 203 (835)
Q Consensus 129 kgl~~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~--l~~adLLvIDEAAAIPl--pllk~Ll- 203 (835)
.-++.+.. .....+...+. . +|. + ..+.+|.+.+-+ ... =.+++++||||++.+|- .++..+.
T Consensus 230 ~~i~~~p~--~~~~~~~~~~~----~---~i~-~-~nGs~i~~~s~~-~~~lrG~~~~~~iiDE~~~~~~~~~l~~~~~~ 297 (592)
T 3cpe_A 230 QAIELLPD--FLQPGIVEWNK----G---SIE-L-DNGSSIGAYASS-PDAVRGNSFAMIYIEDCAFIPNFHDSWLAIQP 297 (592)
T ss_dssp HHHTTSCT--TTSCCEEEECS----S---EEE-E-TTSCEEEEEECC-HHHHHHSCCSEEEEETGGGCTTHHHHHHHHHH
T ss_pred HHHHhChH--hhccccccCCc----c---EEE-e-cCCCEEEEEeCC-CCCccCCCcceEEEehhccCCchhHHHHHHHH
Confidence 65554421 00000111100 0 111 2 345677777532 222 13689999999999997 5555443
Q ss_pred --c--C-CeEEEEeeccCC
Q 003262 204 --G--P-YLVFLSSTVNGY 217 (835)
Q Consensus 204 --~--~-y~vflsSTi~GY 217 (835)
. + ..+++.||-.|-
T Consensus 298 ~l~~~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 298 VISSGRRSKIIITTTPNGL 316 (592)
T ss_dssp HHSSSSCCEEEEEECCCTT
T ss_pred HhccCCCceEEEEeCCCCc
Confidence 2 2 467778887665
No 126
>3ec4_A Putative acetyltransferase from the GNAT family; YP_497011.1, joint center for structural genomics; 1.80A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=97.59 E-value=0.00012 Score=74.05 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=28.4
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.+.|.+|+|+|+|||+|||+++++.+.++..
T Consensus 157 ~~~i~~l~V~p~~Rg~GiG~~Ll~~~~~~a~ 187 (228)
T 3ec4_A 157 LAEVSGVCTWPEYRGRGLAARLIRKVIAGMA 187 (228)
T ss_dssp EEEEEEEEECGGGTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999999998875
No 127
>1s7k_A Acetyl transferase; GNAT; 1.80A {Salmonella typhimurium} SCOP: d.108.1.1 PDB: 1s7l_A* 1s7n_A* 1s7f_A 1z9u_A
Probab=97.59 E-value=0.00023 Score=65.87 Aligned_cols=68 Identities=15% Similarity=0.025 Sum_probs=49.6
Q ss_pred EEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccCC
Q 003262 420 RIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQP 499 (835)
Q Consensus 420 RIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~~ 499 (835)
.+.|+|+|||+|||+++++.+.++.....
T Consensus 100 ~~~v~~~~rg~Gig~~ll~~~~~~a~~~~--------------------------------------------------- 128 (182)
T 1s7k_A 100 GYWLDESFQGQGIMSQSLQALMTHYARRG--------------------------------------------------- 128 (182)
T ss_dssp EEEECGGGCSSSHHHHHHHHHHHHHHHHC---------------------------------------------------
T ss_pred EEEECHhhcCCCHHHHHHHHHHHHHHhhC---------------------------------------------------
Confidence 46799999999999999999998874210
Q ss_pred CCcc--eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCc
Q 003262 500 EKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEH 540 (835)
Q Consensus 500 ~~lD--ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEh 540 (835)
+++ ++.| .--+....+||+|+||.++..........|+.
T Consensus 129 -~~~~i~~~~-~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~g~~ 169 (182)
T 1s7k_A 129 -DIRRFVIKC-RVDNQASNAVARRNHFTLEGCMKQAEYLNGDY 169 (182)
T ss_dssp -SCCEEEEEE-ETTCHHHHHHHHHTTCEEEEEEEEEEEETTEE
T ss_pred -CccEEEEEe-cCCCHHHHHHHHHCCCEEEeeeeeeeecCCce
Confidence 001 1122 22368899999999999998887665556753
No 128
>1nsl_A Probable acetyltransferase; structural genomics, hexamer, alpha-beta, PSI, protein struc initiative, midwest center for structural genomics; 2.70A {Bacillus subtilis} SCOP: d.108.1.1
Probab=97.58 E-value=0.00015 Score=67.36 Aligned_cols=70 Identities=17% Similarity=-0.004 Sum_probs=50.5
Q ss_pred EEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccC
Q 003262 419 VRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQ 498 (835)
Q Consensus 419 VRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~ 498 (835)
+.++|+|+|||+|||+++++.+.++.....
T Consensus 97 i~~~v~p~~rg~Gig~~ll~~~~~~a~~~~-------------------------------------------------- 126 (184)
T 1nsl_A 97 IGYWIAKEFEGKGIITAACRKLITYAFEEL-------------------------------------------------- 126 (184)
T ss_dssp EEEEECGGGTTSSHHHHHHHHHHHHHHHTS--------------------------------------------------
T ss_pred EEEEEChhhcCCCHHHHHHHHHHHHHHHhc--------------------------------------------------
Confidence 457999999999999999999998872110
Q ss_pred CCCcc--eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCce
Q 003262 499 PEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHT 541 (835)
Q Consensus 499 ~~~lD--ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS 541 (835)
+++ ++.| +--+....+||+|+||.++..........|+.-
T Consensus 127 --g~~~i~~~~-~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~g~~~ 168 (184)
T 1nsl_A 127 --ELNRVAICA-AVGNEKSRAVPERIGFLEEGKARDGLYVNGMHH 168 (184)
T ss_dssp --CCSEEEEEE-ETTCHHHHHHHHHHTCEEEEEEEEEEEETTEEE
T ss_pred --CcEEEEEEE-ecCCHHHHHHHHHcCCEEEEEeehhhhhCCCeE
Confidence 111 1122 233788999999999999988776555567543
No 129
>2fck_A Ribosomal-protein-serine acetyltransferase, putat; ribosomal-protein structural genomics, PSI, protein structure initiative; HET: MSE; 1.70A {Vibrio cholerae o1 biovar eltor} SCOP: d.108.1.1
Probab=97.58 E-value=0.00015 Score=67.23 Aligned_cols=70 Identities=17% Similarity=0.064 Sum_probs=50.2
Q ss_pred EEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccCC
Q 003262 420 RIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQP 499 (835)
Q Consensus 420 RIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~~ 499 (835)
.++|+|+|||+|||+++++.+.++...+.
T Consensus 102 ~~~v~~~~rg~Gig~~ll~~~~~~a~~~~--------------------------------------------------- 130 (181)
T 2fck_A 102 GYWIGDRYQRQGYGKEALTALILFCFERL--------------------------------------------------- 130 (181)
T ss_dssp EEEECHHHHTTTHHHHHHHHHHHHHHHTS---------------------------------------------------
T ss_pred EEEEChhhcCCChHHHHHHHHHHHHHHhc---------------------------------------------------
Confidence 67999999999999999999998874211
Q ss_pred CCcceE-EEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCce
Q 003262 500 EKLNYI-GVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHT 541 (835)
Q Consensus 500 ~~lDyl-GvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS 541 (835)
+++.+ ...+--+....+||+|+||.++..........|+.-
T Consensus 131 -g~~~i~~~~~~~N~~a~~~y~k~GF~~~~~~~~~~~~~g~~~ 172 (181)
T 2fck_A 131 -ELTRLEIVCDPENVPSQALALRCGANREQLAPNRFLYAGEPK 172 (181)
T ss_dssp -CCSEEEEEECTTCHHHHHHHHHTTCEEEEEEEEEEEETTEEE
T ss_pred -CceEEEEEEccCCHHHHHHHHHcCCEEEEEEeheeecCCEEE
Confidence 01111 112233688999999999999988766544567543
No 130
>3tt2_A GCN5-related N-acetyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta sandwich; HET: MES; 2.73A {Sphaerobacter thermophilus}
Probab=97.57 E-value=0.00037 Score=71.43 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=27.5
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHhc
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYEG 446 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~g 446 (835)
..++.++|||+|||+|||+++++.+.++...
T Consensus 84 ~~~~~~~V~p~~rg~Gig~~Ll~~~~~~~~~ 114 (330)
T 3tt2_A 84 QLSVYGYVHPRFRGMGLGTWLVQWGEEWIQD 114 (330)
T ss_dssp EEEEEEEECTTSTTSSHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECccccCccHHHHHHHHHHHHHHH
Confidence 4577899999999999999999999988753
No 131
>3juw_A Probable GNAT-family acetyltransferase; structural genomics, APC60242, acetyltransferas protein structure initiative; HET: MSE; 2.11A {Bordetella pertussis}
Probab=97.57 E-value=0.00017 Score=66.79 Aligned_cols=74 Identities=11% Similarity=0.042 Sum_probs=50.6
Q ss_pred EEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccccc
Q 003262 418 IVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRER 497 (835)
Q Consensus 418 IVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~ 497 (835)
.+.++|+|+|||+|||+++++.+.++...+.. +
T Consensus 100 ~~~~~v~p~~rg~Gig~~ll~~~~~~a~~~~g-~---------------------------------------------- 132 (175)
T 3juw_A 100 EAAWAVASAHQGRGLAAEAMQALLAHHDRSSG-R---------------------------------------------- 132 (175)
T ss_dssp EEEEEECGGGTTSSHHHHHHHHHHHHHHHHHT-S----------------------------------------------
T ss_pred eEEEEECHHHhCCCHHHHHHHHHHHHHHhCCC-C----------------------------------------------
Confidence 34579999999999999999999998643210 0
Q ss_pred CCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEc
Q 003262 498 QPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLK 546 (835)
Q Consensus 498 ~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr 546 (835)
.. =++.| +--+....+||+|+||.++..... .|....++-|
T Consensus 133 --~~-i~l~v-~~~N~~a~~~y~k~GF~~~~~~~~----~g~~~~~~~~ 173 (175)
T 3juw_A 133 --QR-VVALI-ARSNLPSLRLAERLGFRGYSDVAF----DGAAHLLLER 173 (175)
T ss_dssp --CC-EEEEE-ETTCHHHHHHHHHTTCEEEEEEEE----TTEEEEEEEE
T ss_pred --ce-EEEEE-CCCChhHHHHHHHcCCeEecceee----CCcEEEEEee
Confidence 00 01222 333789999999999999887433 3555555544
No 132
>2wpx_A ORF14; transferase, acetyl transferase, antibiotic biosynthesis; HET: ACO; 2.31A {Streptomyces clavuligerus} PDB: 2wpw_A*
Probab=97.54 E-value=0.00063 Score=70.47 Aligned_cols=88 Identities=15% Similarity=0.152 Sum_probs=58.9
Q ss_pred cHHHHHHHHHHHHhcccC------CChhHHHHhhc----CCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHH
Q 003262 314 SELFLQRMMALYVSSHYK------NSPNDLQLMAD----APAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVL 383 (835)
Q Consensus 314 sE~fLq~~~aLlV~AHYk------NsPnDLqlL~D----aPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~ 383 (835)
+-.-+.+++.++..+++. .+++++..... .+....||+.. + .+++|.+.+...
T Consensus 17 D~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~-----~---g~~vG~~~~~~~--------- 79 (339)
T 2wpx_A 17 DDETVGQWLDLMALAAETGPRAAPPCNVDMVGSLRFAPPATALDDWVVRS-----G---GRVVGALRLALP--------- 79 (339)
T ss_dssp CHHHHHHHHHHHHHHHHSSSSCCCCCHHHHHHHHHCCCTTEEEEEEEEEE-----T---TEEEEEEEEEEE---------
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHhhccCCCcceeEEEEEE-----C---CEEEEEEEEEec---------
Confidence 334455666666554421 16677765554 34556666651 1 368888877643
Q ss_pred HHHhcCCCCCCCchhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 384 KSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 384 ~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..-..+.|..++|||+|||+|||+++++.+.++..
T Consensus 80 ---------------------------~~~~~~~i~~~~v~p~~r~~Gig~~Ll~~~~~~~~ 114 (339)
T 2wpx_A 80 ---------------------------DGAPTARVDQLLVHPGRRRRGIGRALWAHARELAR 114 (339)
T ss_dssp ---------------------------TTCSEEEEEEEEECTTSCSSSHHHHHHHHHHHHHH
T ss_pred ---------------------------CCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 01134678889999999999999999999998875
No 133
>2vez_A Putative glucosamine 6-phosphate acetyltransferase; acyltransferase; HET: ACO G6P; 1.45A {Aspergillus fumigatus} PDB: 2vxk_A*
Probab=97.53 E-value=7e-05 Score=71.63 Aligned_cols=32 Identities=19% Similarity=0.096 Sum_probs=28.6
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|..|+|+|+|||+|||+++++.+.++..
T Consensus 124 ~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~ 155 (190)
T 2vez_A 124 MVGHIEDIAVEKGQQGKKLGLRIIQALDYVAE 155 (190)
T ss_dssp EEEEEEEEEECGGGTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEchhhcCCCHHHHHHHHHHHHHH
Confidence 34688899999999999999999999998864
No 134
>3fbu_A Acetyltransferase, GNAT family; structur genomics, PSI2, MCSG, protein structure initiative, midwest for structural genomics; HET: COA; 1.80A {Bacillus anthracis str}
Probab=97.51 E-value=0.00032 Score=64.50 Aligned_cols=73 Identities=12% Similarity=0.047 Sum_probs=51.1
Q ss_pred EEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccccc
Q 003262 418 IVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRER 497 (835)
Q Consensus 418 IVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~ 497 (835)
.+.+.|+|+|||+|||+++++.+.++...+.. .
T Consensus 85 ~i~~~v~~~~rg~Gig~~ll~~~~~~a~~~~~--------------~--------------------------------- 117 (168)
T 3fbu_A 85 EIGWVFNPKYFNKGYASEAAQATLKYGFKEMK--------------L--------------------------------- 117 (168)
T ss_dssp EEEEEECGGGTTSSHHHHHHHHHHHHHHHTSC--------------C---------------------------------
T ss_pred EEEEEECHHHhcCCHHHHHHHHHHHHHHhhCC--------------c---------------------------------
Confidence 33566999999999999999999998642210 0
Q ss_pred CCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCce
Q 003262 498 QPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHT 541 (835)
Q Consensus 498 ~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS 541 (835)
..+ ++.| +--+....+||+|+||..+..........|+.-
T Consensus 118 --~~i-~l~v-~~~N~~a~~~y~k~GF~~~g~~~~~~~~~g~~~ 157 (168)
T 3fbu_A 118 --HRI-IATC-QPENTPSYRVMEKIGMRREGYFKKCIPHGNEWW 157 (168)
T ss_dssp --SEE-EEEE-CTTCHHHHHHHHHTTCEEEEEEEEEEEETTEEE
T ss_pred --eEE-EEEe-ccCChHHHHHHHHCCCeEEEEeeeeeecCCcee
Confidence 000 1222 233788999999999999988776665567543
No 135
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=97.48 E-value=0.00026 Score=76.81 Aligned_cols=83 Identities=18% Similarity=0.148 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcccCCCCccccccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEE
Q 003262 33 ERDLKDLKEQLCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFV 112 (835)
Q Consensus 33 ~~~l~~lk~~l~~~~p~g~Lv~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~V 112 (835)
.++++++++.+++..+. ..|.-|.+++..+++ + +-+++.|+.|.|||. ..+..+........+++|
T Consensus 4 ~~~~~~~~~~l~~~~~~------~~~~~Q~~~i~~i~~----~---~~~lv~apTGsGKT~-~~l~~~~~~~~~~~~~li 69 (414)
T 3oiy_A 4 WNEYEDFRSFFKKKFGK------DLTGYQRLWAKRIVQ----G---KSFTMVAPTGVGKTT-FGMMTALWLARKGKKSAL 69 (414)
T ss_dssp HHHHHHHHHHHHHHHSS------CCCHHHHHHHHHHTT----T---CCEECCSCSSSSHHH-HHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHHHHhcCC------CCCHHHHHHHHHHhc----C---CCEEEEeCCCCCHHH-HHHHHHHHHhcCCCEEEE
Confidence 45677777777765443 368999999876542 2 357899999999999 444443333334468999
Q ss_pred ecCChHhHHHHHHHHHh
Q 003262 113 TAPSPENLKTLFEFVCK 129 (835)
Q Consensus 113 TAPs~enl~tlFef~~k 129 (835)
.+|+.+-+...++.+.+
T Consensus 70 l~Pt~~L~~q~~~~~~~ 86 (414)
T 3oiy_A 70 VFPTVTLVKQTLERLQK 86 (414)
T ss_dssp EESSHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHH
Confidence 99999999888877665
No 136
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.47 E-value=0.00015 Score=73.12 Aligned_cols=72 Identities=18% Similarity=0.146 Sum_probs=52.6
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCCcEEEecCChHhHHHHHHHHHhhhcc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA---GYSNIFVTAPSPENLKTLFEFVCKGFNA 133 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~---g~~nI~VTAPs~enl~tlFef~~kgl~~ 133 (835)
.|.-|.+|+..+.+ + +-+++.|+.|.|||.+-.+.+...+.. ...+++|.+|+.+-+...++.+.+-+..
T Consensus 52 ~~~~Q~~~i~~~~~----~---~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 124 (245)
T 3dkp_A 52 PTPIQMQAIPVMLH----G---RELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEG 124 (245)
T ss_dssp CCHHHHHHHHHHHT----T---CCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHhC----C---CCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 68899999865543 2 348999999999999876666555542 2236999999999998888777654433
Q ss_pred cc
Q 003262 134 IE 135 (835)
Q Consensus 134 lg 135 (835)
.+
T Consensus 125 ~~ 126 (245)
T 3dkp_A 125 TG 126 (245)
T ss_dssp SC
T ss_pred cC
Confidence 33
No 137
>3h4q_A Putative acetyltransferase; NP_371943.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE P33; 2.50A {Staphylococcus aureus subsp}
Probab=97.45 E-value=0.00022 Score=67.34 Aligned_cols=81 Identities=15% Similarity=0.081 Sum_probs=51.4
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccc
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVH 493 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~ 493 (835)
..+.|.+|+|||+| +|||+++++.+.++.....
T Consensus 104 ~~~~i~~l~V~p~~--~Gig~~Ll~~~~~~a~~~g--------------------------------------------- 136 (188)
T 3h4q_A 104 GAFVIHRLTGSKEY--KGAATELFNYVIDVVKARG--------------------------------------------- 136 (188)
T ss_dssp TCEEEEEEECCSSC--TTHHHHHHHHHHHHHHHTT---------------------------------------------
T ss_pred CeEEEEEEEECCcc--CcHHHHHHHHHHHHHHHcC---------------------------------------------
Confidence 55789999999999 9999999999998875321
Q ss_pred ccccCCCCcceEEE-ecCCCHHHHHHHHHCCCeEEEeeecccC--CCCCceEEEEccCC
Q 003262 494 LRERQPEKLNYIGV-SFGLTLDLFRFWRKHKFAPFYVSQNANA--VTGEHTCMVLKPLH 549 (835)
Q Consensus 494 l~e~~~~~lDylGv-SFGlT~~Ll~FWkk~GF~pVylrq~~ne--~TGEhS~IMlr~L~ 549 (835)
+..+-+ .+.-+....+||+|+||.++......+. ..|...++|-|.|.
T Consensus 137 --------~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~~~~~~~~~~k~L~ 187 (188)
T 3h4q_A 137 --------AEVILTDTFALNKPAQGLFAKFGFHKVGEQLMEYPPYDKGEPFYAYYKNLK 187 (188)
T ss_dssp --------CCEEEEEGGGSCGGGTHHHHHTTCEEC--------------CCCEEEEECC
T ss_pred --------CCEEEEEEecCCHHHHHHHHHCCCeEeceEEecccccccccchHHHHHhhc
Confidence 111111 1223678899999999999987765422 23556677777664
No 138
>4fd7_A Putative arylalkylamine N-acetyltransferase 7; GNAT, COA binding; 1.80A {Aedes aegypti}
Probab=97.44 E-value=0.00015 Score=73.19 Aligned_cols=32 Identities=6% Similarity=0.042 Sum_probs=28.7
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|..|+|||+|||+|+|+++++.+.++..
T Consensus 146 ~~~~~~~~~V~p~~rg~Gig~~L~~~~~~~~~ 177 (238)
T 4fd7_A 146 HYLNAMGLSVDPKYRGRGIATEILRARIPLCR 177 (238)
T ss_dssp EEEEEEEEEECGGGTTSSHHHHHHHTHHHHHH
T ss_pred cEEEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999988764
No 139
>3eo4_A Uncharacterized protein MJ1062; APC60792.2,MJ_1062,methanocaldococcus jannaschii DSM 2661, S genomics, PSI-2; HET: MES PG6; 2.19A {Methanocaldococcus jannaschii}
Probab=97.42 E-value=0.00039 Score=64.19 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=24.6
Q ss_pred EEEeeCc-ccccCChHHHHHHHHHHHHh
Q 003262 419 VRIATHP-SAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 419 VRIAvhP-d~q~mGyGsraL~~L~~~~~ 445 (835)
+.+.|+| +|||+|||+++++.+.++..
T Consensus 93 i~~~v~~~~~rg~Gig~~ll~~~~~~a~ 120 (164)
T 3eo4_A 93 IGILIGEFFLWGKHIGRHSVSLVLKWLK 120 (164)
T ss_dssp EEEEECSTTSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCHHHcCccHHHHHHHHHHHHHH
Confidence 3789999 99999999999999999873
No 140
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.40 E-value=0.00082 Score=65.44 Aligned_cols=142 Identities=22% Similarity=0.174 Sum_probs=82.5
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-----CCCcEEEecCChHhHHHHHHHHHhhh
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA-----GYSNIFVTAPSPENLKTLFEFVCKGF 131 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~-----g~~nI~VTAPs~enl~tlFef~~kgl 131 (835)
.+.-|.+++..+.+ + +.+++.|+.|.|||.+..+++...+.. +..+++|.+|+.+-+...++.+.+-+
T Consensus 24 ~~~~Q~~~i~~~~~----~---~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 96 (207)
T 2gxq_A 24 PTPIQAAALPLALE----G---KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVA 96 (207)
T ss_dssp CCHHHHHHHHHHHT----T---CCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHcC----C---CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHh
Confidence 68899999875543 2 358999999999999876666655532 24579999999988888877665433
Q ss_pred ccccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccc--------cccCCCcEEEEecccCC----CHHHH
Q 003262 132 NAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEH--------EKLAQVELLVIDEAAAI----PLPVV 199 (835)
Q Consensus 132 ~~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~--------~~l~~adLLvIDEAAAI----Plpll 199 (835)
..+ ......+... ....... . .....|-+..|+.+ ..+...+++|||||=.+ -.+.+
T Consensus 97 ~~~------~~~~~~~~~~-~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~ 165 (207)
T 2gxq_A 97 PHL------KVVAVYGGTG-YGKQKEA---L-LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEV 165 (207)
T ss_dssp TTS------CEEEECSSSC-SHHHHHH---H-HHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHH
T ss_pred hcc------eEEEEECCCC-hHHHHHH---h-hCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHH
Confidence 221 1111111100 0000000 0 00112333444322 12456899999999754 24556
Q ss_pred HHhhc-----CCeEEEEeeccC
Q 003262 200 RSLLG-----PYLVFLSSTVNG 216 (835)
Q Consensus 200 k~Ll~-----~y~vflsSTi~G 216 (835)
..++. ..+++||.|.+.
T Consensus 166 ~~i~~~~~~~~~~i~~SAT~~~ 187 (207)
T 2gxq_A 166 EALLSATPPSRQTLLFSATLPS 187 (207)
T ss_dssp HHHHHTSCTTSEEEEECSSCCH
T ss_pred HHHHHhCCccCeEEEEEEecCH
Confidence 66652 236788999753
No 141
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00053 Score=82.51 Aligned_cols=67 Identities=21% Similarity=0.179 Sum_probs=54.2
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHh
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~k 129 (835)
..+.+|.+||..++. +..++|.|+.|.|||+++--.++.++.....+|+|||||..++..+.+-+.+
T Consensus 360 ~Ln~~Q~~Av~~~l~-------~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQ-------RPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCCHHHHHHHHHHTT-------CSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhc-------CCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 357899999875532 3578999999999999998777777764447899999999999999887653
No 142
>1r57_A Conserved hypothetical protein; GCN5, N-acetyltransferase, structural genomics, PSI, protein structure initiative; NMR {Staphylococcus aureus} SCOP: d.108.1.1 PDB: 2h5m_A*
Probab=97.36 E-value=0.00013 Score=64.23 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=27.7
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
+.|.+|+|+|+|||+|+|+++|+.+.++..
T Consensus 36 ~~i~~~~V~p~~rg~GiG~~Ll~~~~~~a~ 65 (102)
T 1r57_A 36 INIDHTGVSDELGGQGVGKKLLKAVVEHAR 65 (102)
T ss_dssp EEEEEEEECCSSSTTCTHHHHHHHHHHHHH
T ss_pred EEEEEEEECHHHCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999988764
No 143
>1yre_A Hypothetical protein PA3270; APC5563, midwest center for structural genomics, MSC protein structure initiative, PSI, MCSG; HET: COA; 2.15A {Pseudomonas aeruginosa} SCOP: d.108.1.1
Probab=97.36 E-value=0.00069 Score=64.42 Aligned_cols=73 Identities=12% Similarity=-0.048 Sum_probs=51.4
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccc
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLR 495 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~ 495 (835)
+.|--+.|+|+|||+|||+++++.+.++.....
T Consensus 97 ~~i~~l~v~~~~rg~Gig~~ll~~~~~~a~~~~----------------------------------------------- 129 (197)
T 1yre_A 97 CEIGWTWLDQAQHGSGLNRMIKYLMLKHAFDNL----------------------------------------------- 129 (197)
T ss_dssp EEEEEEEECGGGTTTTHHHHHHHHHHHHHHHTS-----------------------------------------------
T ss_pred eEEEEEEECHhHhcCCHHHHHHHHHHHHHHhhc-----------------------------------------------
Confidence 456556999999999999999999998864210
Q ss_pred ccCCCCcceE-EEecCCCHHHHHHHHHCCCeEEEeeecccCC-CCCc
Q 003262 496 ERQPEKLNYI-GVSFGLTLDLFRFWRKHKFAPFYVSQNANAV-TGEH 540 (835)
Q Consensus 496 e~~~~~lDyl-GvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~-TGEh 540 (835)
+++.+ ...+--+....+||+|+||..+......... .|..
T Consensus 130 -----g~~~i~~~v~~~N~~a~~~y~k~GF~~~g~~~~~~~~~~g~~ 171 (197)
T 1yre_A 130 -----RMVRVQLSTAASNLRAQGAIDKLGAQREGVLRNHRRLAGGRL 171 (197)
T ss_dssp -----CCSEEEEEEETTCHHHHHHHHHHTCEEEEEEEEEEECTTSCE
T ss_pred -----CccEEEEEEcCCCHHHHHHHHHcCCeeeeeecceEEcCCCcE
Confidence 11111 1122337889999999999999887765433 5753
No 144
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.35 E-value=0.00065 Score=81.34 Aligned_cols=139 Identities=13% Similarity=0.248 Sum_probs=84.0
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-cC-CCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA-AG-YSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~-~g-~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
.|..|.+++...+. + +..++|+|+.|.|||+++-+.+..... .| -..|+|++|..+.+..+.+.+.+.+..
T Consensus 94 P~~~q~~~i~~~l~---~---~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~- 166 (773)
T 2xau_A 94 PVHAQRDEFLKLYQ---N---NQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDV- 166 (773)
T ss_dssp GGGGGHHHHHHHHH---H---CSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTC-
T ss_pred ChHHHHHHHHHHHh---C---CCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCC-
Confidence 46678888776654 3 357899999999999987766433221 11 246999999999998888776554421
Q ss_pred cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc-------ccCCCcEEEEecccC--CC----HHHHHH
Q 003262 135 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE-------KLAQVELLVIDEAAA--IP----LPVVRS 201 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~-------~l~~adLLvIDEAAA--IP----lpllk~ 201 (835)
.......|.+... -.......|.|..|..+. .+...++||||||=. +. +.+++.
T Consensus 167 ~v~~~vG~~i~~~-------------~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~ 233 (773)
T 2xau_A 167 KLGEEVGYSIRFE-------------NKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQ 233 (773)
T ss_dssp CBTTTEEEEETTE-------------EECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHH
T ss_pred chhheecceeccc-------------cccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHH
Confidence 0111111211000 000112345566665442 256789999999985 44 345666
Q ss_pred hhc----CCeEEEEeecc
Q 003262 202 LLG----PYLVFLSSTVN 215 (835)
Q Consensus 202 Ll~----~y~vflsSTi~ 215 (835)
++. ..+++||.|.+
T Consensus 234 l~~~~~~~~iIl~SAT~~ 251 (773)
T 2xau_A 234 VVKRRPDLKIIIMSATLD 251 (773)
T ss_dssp HHHHCTTCEEEEEESCSC
T ss_pred HHHhCCCceEEEEecccc
Confidence 653 23677888985
No 145
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.35 E-value=0.00042 Score=70.13 Aligned_cols=143 Identities=20% Similarity=0.175 Sum_probs=84.0
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCcEEEecCChHhHHHHHHHHHh
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA-------GYSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~-------g~~nI~VTAPs~enl~tlFef~~k 129 (835)
.|.-|.+++-.+.+ + +-+++.|+.|.|||.+--+.+...+.. +...++|.+|+.+-+..+++.+.+
T Consensus 52 ~~~~Q~~~i~~~~~----g---~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 124 (242)
T 3fe2_A 52 PTAIQAQGWPVALS----G---LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAE 124 (242)
T ss_dssp CCHHHHHHHHHHHH----T---CCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----C---CCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 58899999876543 2 358899999999999877766655542 234689999999998888877655
Q ss_pred hhccccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc--------ccCCCcEEEEecccCCC----HH
Q 003262 130 GFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIP----LP 197 (835)
Q Consensus 130 gl~~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~--------~l~~adLLvIDEAAAIP----lp 197 (835)
-+...++.-. .+.+..+ ..... ... .....|-+..|+-+. .+...+++|||||=.+. .+
T Consensus 125 ~~~~~~~~~~----~~~g~~~-~~~~~---~~~-~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~ 195 (242)
T 3fe2_A 125 YCRACRLKST----CIYGGAP-KGPQI---RDL-ERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEP 195 (242)
T ss_dssp HHHHTTCCEE----EECTTSC-HHHHH---HHH-HHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHH
T ss_pred HHhhcCceEE----EEECCCC-hHHHH---HHh-cCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHH
Confidence 4333332211 1111000 00000 000 001124444443331 24578999999996542 45
Q ss_pred HHHHhhcC-----CeEEEEeecc
Q 003262 198 VVRSLLGP-----YLVFLSSTVN 215 (835)
Q Consensus 198 llk~Ll~~-----y~vflsSTi~ 215 (835)
.+..++.. .+++||.|..
T Consensus 196 ~~~~i~~~~~~~~q~~~~SAT~~ 218 (242)
T 3fe2_A 196 QIRKIVDQIRPDRQTLMWSATWP 218 (242)
T ss_dssp HHHHHHTTSCSSCEEEEEESCCC
T ss_pred HHHHHHHhCCccceEEEEEeecC
Confidence 56666642 2677899963
No 146
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.35 E-value=0.0003 Score=70.51 Aligned_cols=142 Identities=19% Similarity=0.207 Sum_probs=81.9
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc------CCCcEEEecCChHhHHHHHHHHHhh
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA------GYSNIFVTAPSPENLKTLFEFVCKG 130 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~------g~~nI~VTAPs~enl~tlFef~~kg 130 (835)
.|.-|.+++..+.+ + +.+++.|+.|.|||.+.-+.+...+.. ...+++|.+|+.+-+...++.+.+-
T Consensus 48 ~~~~Q~~~i~~~~~----~---~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 120 (236)
T 2pl3_A 48 VTEIQKQTIGLALQ----G---KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKV 120 (236)
T ss_dssp CCHHHHHHHHHHHT----T---CCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----C---CCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 58899998865542 2 358899999999999877766655432 2347999999999888887766542
Q ss_pred hccccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccc---------cccCCCcEEEEecccCCC----HH
Q 003262 131 FNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEH---------EKLAQVELLVIDEAAAIP----LP 197 (835)
Q Consensus 131 l~~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~---------~~l~~adLLvIDEAAAIP----lp 197 (835)
....++. .....+..+ ...... .-....|-+..|+-+ ..+...+++|||||=.+. .+
T Consensus 121 ~~~~~~~----~~~~~g~~~-~~~~~~-----~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~ 190 (236)
T 2pl3_A 121 GKNHDFS----AGLIIGGKD-LKHEAE-----RINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFAD 190 (236)
T ss_dssp TTTSSCC----EEEECCC---CHHHHH-----HHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHH
T ss_pred hCCCCee----EEEEECCCC-HHHHHH-----hCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHH
Confidence 2221111 011111000 000000 001122444444332 123467899999997653 45
Q ss_pred HHHHhhc-----CCeEEEEeecc
Q 003262 198 VVRSLLG-----PYLVFLSSTVN 215 (835)
Q Consensus 198 llk~Ll~-----~y~vflsSTi~ 215 (835)
.+..++. ..+++||.|..
T Consensus 191 ~~~~i~~~~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 191 TMNAVIENLPKKRQTLLFSATQT 213 (236)
T ss_dssp HHHHHHHTSCTTSEEEEEESSCC
T ss_pred HHHHHHHhCCCCCeEEEEEeeCC
Confidence 5666653 23678898864
No 147
>3r9f_A MCCE protein; microcin C7, acetyltransferase, SELF immunity, resistance, A coenzyme A, transferase; HET: COA GSU; 1.20A {Escherichia coli} PDB: 3r95_A* 3r96_A* 3r9e_A* 3r9g_A*
Probab=97.33 E-value=0.00062 Score=64.09 Aligned_cols=70 Identities=16% Similarity=-0.043 Sum_probs=50.3
Q ss_pred EEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccCC
Q 003262 420 RIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQP 499 (835)
Q Consensus 420 RIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~~ 499 (835)
.+.|+|+|||+|||+++++.+.+|...+.. ..+
T Consensus 108 ~~~v~~~~~g~Gig~~ll~~~~~~a~~~~~--------------~~~--------------------------------- 140 (188)
T 3r9f_A 108 GYWLGANFQGKGIVTNAINKLIQEYGDSGV--------------IKR--------------------------------- 140 (188)
T ss_dssp EEEECGGGTTSSHHHHHHHHHHHHHHTTTS--------------CSE---------------------------------
T ss_pred EEEEChhhcCCCHHHHHHHHHHHHHHHhcC--------------eEE---------------------------------
Confidence 468999999999999999999998642210 000
Q ss_pred CCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCc
Q 003262 500 EKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEH 540 (835)
Q Consensus 500 ~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEh 540 (835)
=++.| +--+....+||+|+||..+..........|+.
T Consensus 141 ---i~~~v-~~~N~~a~~~y~k~GF~~~g~~~~~~~~~g~~ 177 (188)
T 3r9f_A 141 ---FVIKC-IVDNKKSNATALRCGFTLEGVLQKAEILNGVS 177 (188)
T ss_dssp ---EEEEE-ETTCHHHHHHHHHTTCEEEEEEEEEEEETTEE
T ss_pred ---EEEEe-cCCCHHHHHHHHHCCCeEEeEeeeeEEECCEE
Confidence 01222 23378899999999999998877666567754
No 148
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.32 E-value=0.0008 Score=67.09 Aligned_cols=142 Identities=20% Similarity=0.158 Sum_probs=79.3
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--------CCCcEEEecCChHhHHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--------GYSNIFVTAPSPENLKTLFEFVC 128 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~--------g~~nI~VTAPs~enl~tlFef~~ 128 (835)
.|.-|.+++..+. ++ +-+++.|+.|.|||.+.-+.+...+.. ...+++|.+|+.+-+..+.+.+.
T Consensus 43 ~~~~Q~~~i~~~~----~~---~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 115 (228)
T 3iuy_A 43 PTPIQSQAWPIIL----QG---IDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECS 115 (228)
T ss_dssp CCHHHHHHHHHHH----TT---CCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh----CC---CCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHH
Confidence 6889999986554 22 357999999999998866655444321 23468999999999888887665
Q ss_pred hhhccccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc--------ccCCCcEEEEecccCCC----H
Q 003262 129 KGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIP----L 196 (835)
Q Consensus 129 kgl~~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~--------~l~~adLLvIDEAAAIP----l 196 (835)
+ +...+.. ...+.+.... ..... .. ..+..|-+..|+-+. .+...++||||||=.+. .
T Consensus 116 ~-~~~~~~~----~~~~~~~~~~-~~~~~---~~-~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~ 185 (228)
T 3iuy_A 116 K-YSYKGLK----SICIYGGRNR-NGQIE---DI-SKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFE 185 (228)
T ss_dssp H-HCCTTCC----EEEECC-------CHH---HH-HSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCH
T ss_pred H-hcccCce----EEEEECCCCh-HHHHH---Hh-cCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchH
Confidence 4 1111111 0011110000 00000 00 001134444444332 24568999999997644 4
Q ss_pred HHHHHhhc-----CCeEEEEeecc
Q 003262 197 PVVRSLLG-----PYLVFLSSTVN 215 (835)
Q Consensus 197 pllk~Ll~-----~y~vflsSTi~ 215 (835)
+.+..++. ..+++||.|..
T Consensus 186 ~~~~~i~~~~~~~~~~l~~SAT~~ 209 (228)
T 3iuy_A 186 PQIRKILLDVRPDRQTVMTSATWP 209 (228)
T ss_dssp HHHHHHHHHSCSSCEEEEEESCCC
T ss_pred HHHHHHHHhCCcCCeEEEEEeeCC
Confidence 44555552 22577888854
No 149
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.30 E-value=0.0003 Score=69.68 Aligned_cols=142 Identities=17% Similarity=0.217 Sum_probs=80.0
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
.+.-|.+++..+.+ + +.+++.|+.|.|||.+..+++...+.. ...+++|.+|+.+-+...++.+.+-....
T Consensus 37 ~~~~Q~~~i~~~~~----~---~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 109 (224)
T 1qde_A 37 PSAIQQRAIMPIIE----G---HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM 109 (224)
T ss_dssp CCHHHHHHHHHHHT----T---CCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CcHHHHHHHHHHhc----C---CCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhccc
Confidence 68899998876543 2 358999999999998876666555432 23479999999998888776654322222
Q ss_pred cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccc--------cccCCCcEEEEecccCC----CHHHHHHh
Q 003262 135 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEH--------EKLAQVELLVIDEAAAI----PLPVVRSL 202 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~--------~~l~~adLLvIDEAAAI----Plpllk~L 202 (835)
+.. .....+... .... ..... ...|-+..|+-+ ..+...+++|||||=.+ -...+..+
T Consensus 110 ~~~----~~~~~g~~~-~~~~---~~~~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i 179 (224)
T 1qde_A 110 DIK----VHACIGGTS-FVED---AEGLR--DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQI 179 (224)
T ss_dssp CCC----EEEECC--------------CT--TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHH
T ss_pred Cce----EEEEeCCcc-hHHH---HhcCC--CCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHH
Confidence 211 011111000 0000 00000 123444444432 12456899999999754 23445555
Q ss_pred hc-----CCeEEEEeecc
Q 003262 203 LG-----PYLVFLSSTVN 215 (835)
Q Consensus 203 l~-----~y~vflsSTi~ 215 (835)
+. ..+++||.|..
T Consensus 180 ~~~~~~~~~~i~lSAT~~ 197 (224)
T 1qde_A 180 FTLLPPTTQVVLLSATMP 197 (224)
T ss_dssp HHHSCTTCEEEEEESSCC
T ss_pred HHhCCccCeEEEEEeecC
Confidence 42 23677898865
No 150
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=97.27 E-value=0.002 Score=71.98 Aligned_cols=141 Identities=13% Similarity=0.069 Sum_probs=87.3
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
...|..|.+|+..+++. .-++|.|+.|.|||.+.-+++..++..+..+++|.+|+.+-+...++-+.+ +
T Consensus 112 ~~l~~~Q~~ai~~~~~~-------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~-~--- 180 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVD-Y--- 180 (510)
T ss_dssp ECCCHHHHHHHHHHHHH-------SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHH-T---
T ss_pred CCCCHHHHHHHHHHHhc-------CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHH-h---
Confidence 36799999999876542 357999999999999987666666666766999999998777766655432 2
Q ss_pred cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccc-----cccCCCcEEEEecccCCCHHHHHHhhc-----
Q 003262 135 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEH-----EKLAQVELLVIDEAAAIPLPVVRSLLG----- 204 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~-----~~l~~adLLvIDEAAAIPlpllk~Ll~----- 204 (835)
+.........+.+....... ......|-+..|+.+ ..+...++||||||=.+.-+-+..++.
T Consensus 181 ~~~~~~~v~~~~~~~~~~~~--------~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~~~~~~il~~~~~~ 252 (510)
T 2oca_A 181 RLFSHAMIKKIGGGASKDDK--------YKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIISGLNNC 252 (510)
T ss_dssp TSSCGGGEEECGGGCCTTGG--------GCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCHHHHHHHGGGCTTC
T ss_pred hcCCccceEEEecCCccccc--------cccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCcccHHHHHHhcccC
Confidence 11000111112121111100 000111222222211 224567999999999999888888864
Q ss_pred CCeEEEEeec
Q 003262 205 PYLVFLSSTV 214 (835)
Q Consensus 205 ~y~vflsSTi 214 (835)
++++.||.|.
T Consensus 253 ~~~l~lSATp 262 (510)
T 2oca_A 253 MFKFGLSGSL 262 (510)
T ss_dssp CEEEEEESCG
T ss_pred cEEEEEEeCC
Confidence 3467789998
No 151
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.27 E-value=0.00012 Score=71.57 Aligned_cols=145 Identities=17% Similarity=0.226 Sum_probs=81.2
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCChHhHHHHHHHHHhhhcc
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSPENLKTLFEFVCKGFNA 133 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAPs~enl~tlFef~~kgl~~ 133 (835)
..+.-|.+++..+.+ + +-+++.|+.|.|||.+.-+.+...+.. +..+++|.+|+.+-+....+.+.+-+..
T Consensus 25 ~~~~~Q~~~i~~~~~----~---~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 97 (206)
T 1vec_A 25 KPSPIQEESIPIALS----G---RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKH 97 (206)
T ss_dssp SCCHHHHHHHHHHHT----T---CCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHcc----C---CCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhh
Confidence 368899999876543 2 358999999999997765555444322 2246999999999888877765443222
Q ss_pred ccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccc--------cccCCCcEEEEecccCCC----HHHHHH
Q 003262 134 IEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEH--------EKLAQVELLVIDEAAAIP----LPVVRS 201 (835)
Q Consensus 134 lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~--------~~l~~adLLvIDEAAAIP----lpllk~ 201 (835)
.+ ........+.. ...+.+.+ ......|-+..|+.+ ..+...+++|||||=.+. .+.+..
T Consensus 98 ~~---~~~~~~~~g~~-~~~~~~~~----~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~ 169 (206)
T 1vec_A 98 MG---GAKVMATTGGT-NLRDDIMR----LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMED 169 (206)
T ss_dssp SS---SCCEEEECSSS-CHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred cC---CceEEEEeCCc-cHHHHHHh----cCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHH
Confidence 10 00111111100 00000000 001123444444433 124568999999997432 355555
Q ss_pred hh-----cCCeEEEEeecc
Q 003262 202 LL-----GPYLVFLSSTVN 215 (835)
Q Consensus 202 Ll-----~~y~vflsSTi~ 215 (835)
++ ...+++||.|..
T Consensus 170 i~~~~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 170 IILTLPKNRQILLYSATFP 188 (206)
T ss_dssp HHHHSCTTCEEEEEESCCC
T ss_pred HHHhCCccceEEEEEeeCC
Confidence 55 234688899975
No 152
>3iwg_A Acetyltransferase, GNAT family; structural genomics, APC, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.30A {Colwellia psychrerythraea}
Probab=97.27 E-value=0.00041 Score=72.84 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=23.7
Q ss_pred EeeCcccccCChHHHHHHHHHHHHh
Q 003262 421 IATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 421 IAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
|+|+|+|||+|||+++++.+.++..
T Consensus 212 l~V~p~~RGkGiG~~Ll~~l~~~a~ 236 (276)
T 3iwg_A 212 MIVAQSNRGQGIAKKVLTFLTKHAA 236 (276)
T ss_dssp EEECGGGTTSSHHHHHHHHHHHHHH
T ss_pred EEECHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998875
No 153
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.26 E-value=0.00051 Score=70.39 Aligned_cols=67 Identities=25% Similarity=0.166 Sum_probs=50.5
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC--CCcEEEecCChHhHHHHHHHHHh
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG--YSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g--~~nI~VTAPs~enl~tlFef~~k 129 (835)
..|.-|.+++..+.+ + +-+++.|+.|.|||.+.-+.+...+..+ ..+++|.+|+.+-+...++.+.+
T Consensus 65 ~~~~~Q~~~i~~i~~----~---~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~ 133 (249)
T 3ber_A 65 KPTKIQIEAIPLALQ----G---RDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEA 133 (249)
T ss_dssp SCCHHHHHHHHHHHT----T---CCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----C---CCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHH
Confidence 358899998875543 2 4588999999999998877776655443 24699999999988887766544
No 154
>2zw5_A Bleomycin acetyltransferase; dimer, two domains; HET: COA; 2.40A {Streptomyces verticillus} PDB: 2zw4_A* 2zw6_A 2zw7_A*
Probab=97.25 E-value=0.0011 Score=67.62 Aligned_cols=77 Identities=8% Similarity=-0.152 Sum_probs=53.4
Q ss_pred EEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccCC
Q 003262 420 RIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQP 499 (835)
Q Consensus 420 RIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~~ 499 (835)
.+.|+|+|||+|||+++++.+.+|...... ..+
T Consensus 96 g~~v~~~~~g~G~g~~l~~~l~~~a~~~~g--------------~~~--------------------------------- 128 (301)
T 2zw5_A 96 TWLLRRDSWGHGYATEAAAAVVGHALEDGG--------------LDR--------------------------------- 128 (301)
T ss_dssp EEEECTTSTTTTHHHHHHHHHHHHHHTTTC--------------CSE---------------------------------
T ss_pred EEEECHhHcCCCHHHHHHHHHHHHHHhcCC--------------ccE---------------------------------
Confidence 368899999999999999999998631100 000
Q ss_pred CCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEcc
Q 003262 500 EKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKP 547 (835)
Q Consensus 500 ~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~ 547 (835)
=++.| +--+....+||+|+||+.+..........|.+.++|-..
T Consensus 129 ---i~~~v-~~~N~~s~~ly~k~GF~~~g~~~~~~~~~g~d~~~~~l~ 172 (301)
T 2zw5_A 129 ---VEAWI-EAGNRRSLAVAARVGLTERARLAQHYPHRPGPHEMVVLG 172 (301)
T ss_dssp ---EEEEE-ESSCHHHHHHHHHTTCEEEEEEEECCTTSSSCEEEEEEE
T ss_pred ---EEEEe-CCCCHHHHHHHHHcCCcCcceehhhcccCCCCeEEEEEe
Confidence 01222 333789999999999999987444444567777777543
No 155
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=97.25 E-value=0.0007 Score=79.35 Aligned_cols=139 Identities=22% Similarity=0.249 Sum_probs=90.8
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCcEEEecCChHhHHHHHHHHHhhhcccc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA-AGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 135 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~-~g~~nI~VTAPs~enl~tlFef~~kgl~~lg 135 (835)
.+.-|.+++... +.+ ...+++.|+.|.|||.+.-+++...+. .| .+|++++|..+-+...++-+ +.+..+|
T Consensus 31 l~~~Q~~~i~~~---~~~---~~~~lv~apTGsGKT~~~~l~il~~~~~~~-~~il~i~P~r~La~q~~~~~-~~~~~~g 102 (715)
T 2va8_A 31 LNPPQTEAVKKG---LLE---GNRLLLTSPTGSGKTLIAEMGIISFLLKNG-GKAIYVTPLRALTNEKYLTF-KDWELIG 102 (715)
T ss_dssp CCHHHHHHHHTT---TTT---TCCEEEECCTTSCHHHHHHHHHHHHHHHSC-SEEEEECSCHHHHHHHHHHH-GGGGGGT
T ss_pred CCHHHHHHHHHH---hcC---CCcEEEEcCCCCcHHHHHHHHHHHHHHHCC-CeEEEEeCcHHHHHHHHHHH-HHhhcCC
Confidence 688999998652 222 346899999999999999888876665 44 58999999999888888776 3444443
Q ss_pred ccccccceeeecCCC--CCCcceeEeeeeeccceeEEeeCCcccc--------ccCCCcEEEEecccCCC----HHHHHH
Q 003262 136 YKEHIDYDIVRSSNP--DLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIP----LPVVRS 201 (835)
Q Consensus 136 y~e~~dy~i~~st~p--~~~~aivrvni~~~hrq~Iqyi~P~d~~--------~l~~adLLvIDEAAAIP----lpllk~ 201 (835)
.+ +...++. .+.+. .....|-+..|+-+. .+...+++|||||=.+. -+.++.
T Consensus 103 ~~------v~~~~G~~~~~~~~--------~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~ 168 (715)
T 2va8_A 103 FK------VAMTSGDYDTDDAW--------LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVES 168 (715)
T ss_dssp CC------EEECCSCSSSCCGG--------GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHH
T ss_pred CE------EEEEeCCCCCchhh--------cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHH
Confidence 22 1111110 00000 013346666664332 14567999999998853 355555
Q ss_pred hh----cCCeEEEEeeccCC
Q 003262 202 LL----GPYLVFLSSTVNGY 217 (835)
Q Consensus 202 Ll----~~y~vflsSTi~GY 217 (835)
++ ...+|+||.|+.-+
T Consensus 169 i~~~~~~~~ii~lSATl~n~ 188 (715)
T 2va8_A 169 VTIRAKRRNLLALSATISNY 188 (715)
T ss_dssp HHHHHHTSEEEEEESCCTTH
T ss_pred HHHhcccCcEEEEcCCCCCH
Confidence 55 35578899998643
No 156
>2qml_A BH2621 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.55A {Bacillus halodurans}
Probab=97.24 E-value=0.0012 Score=62.92 Aligned_cols=72 Identities=8% Similarity=0.003 Sum_probs=50.6
Q ss_pred EEEeeC-cccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccccc
Q 003262 419 VRIATH-PSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRER 497 (835)
Q Consensus 419 VRIAvh-Pd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~ 497 (835)
.+|.|+ |+|||+|||+++++.+.++.....
T Consensus 108 ~~~~v~~p~~rg~Gig~~ll~~~~~~a~~~~------------------------------------------------- 138 (198)
T 2qml_A 108 IHLLIGPQEYLGQGLIYPLLLAIMQQKFQEP------------------------------------------------- 138 (198)
T ss_dssp EEEEECSGGGSSSSTHHHHHHHHHHHHHTST-------------------------------------------------
T ss_pred EEEEEeCHHHcCCCHHHHHHHHHHHHHHhCC-------------------------------------------------
Confidence 368888 699999999999999999873110
Q ss_pred CCCCcceEE-EecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEc
Q 003262 498 QPEKLNYIG-VSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLK 546 (835)
Q Consensus 498 ~~~~lDylG-vSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr 546 (835)
+++.+- ..+--+....+||+|+||.++...... |...++|-.
T Consensus 139 ---g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~----~~d~~~~~l 181 (198)
T 2qml_A 139 ---DTNTIVAEPDRRNKKMIHVFKKCGFQPVKEVELP----DKIGLLMKC 181 (198)
T ss_dssp ---TCCEEEECCBTTCHHHHHHHHHTTCEEEEEEECS----SCEEEEEEE
T ss_pred ---CCCEEEEecCCCCHHHHHHHHHCCCEEEEEEecC----CccEEEEEc
Confidence 111111 112236889999999999999876654 566666654
No 157
>3tt2_A GCN5-related N-acetyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta sandwich; HET: MES; 2.73A {Sphaerobacter thermophilus}
Probab=97.23 E-value=0.00094 Score=68.41 Aligned_cols=30 Identities=10% Similarity=0.020 Sum_probs=27.5
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
+.|..|+|+|+|||+|||+.++..+.+++.
T Consensus 247 ~~i~~~~v~p~~rg~G~g~~Ll~~~~~~~~ 276 (330)
T 3tt2_A 247 GWIGSVGVRRPWRGRGIALALLQEVFGVYY 276 (330)
T ss_dssp EEEEEEEECGGGTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEeeECHHHhhcCHHHHHHHHHHHHHH
Confidence 578899999999999999999999998774
No 158
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.22 E-value=0.0014 Score=64.90 Aligned_cols=65 Identities=18% Similarity=0.107 Sum_probs=48.1
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCChHhHHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSPENLKTLFEFVC 128 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAPs~enl~tlFef~~ 128 (835)
.+.-|.+++..+++ + +-+++.|+.|.|||.+.-+++...+.. +..+++|.+|+.+-+....+-+.
T Consensus 37 ~~~~Q~~~i~~~~~----~---~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 103 (220)
T 1t6n_A 37 PSEVQHECIPQAIL----G---MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYE 103 (220)
T ss_dssp CCHHHHHHHHHHHT----T---CCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----C---CCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHH
Confidence 58899999876543 2 348999999999998776655554433 23479999999998887776554
No 159
>1p0h_A Hypothetical protein RV0819; GNAT fold, acetyltransferase, coenzyme A complex, MSHD, TRAN; HET: COA ACO; 1.60A {Mycobacterium tuberculosis} SCOP: d.108.1.1 PDB: 1ozp_A* 2c27_A*
Probab=97.21 E-value=0.004 Score=64.26 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=23.1
Q ss_pred EEEEeeCcccccCChHHHHHHHHHHH
Q 003262 418 IVRIATHPSAMRLGYGSTAVELLTRY 443 (835)
Q Consensus 418 IVRIAvhPd~q~mGyGsraL~~L~~~ 443 (835)
++.|+|||+|||+|+|+++++.+.++
T Consensus 80 ~~~l~v~p~~rg~Gig~~Ll~~~~~~ 105 (318)
T 1p0h_A 80 MAELVVHPQSRRRGIGTAMARAALAK 105 (318)
T ss_dssp EEEEEECGGGCSSSHHHHHHHHHHHH
T ss_pred EEEEEECccccCCCHHHHHHHHHHHh
Confidence 55689999999999999999988764
No 160
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.20 E-value=0.00028 Score=71.28 Aligned_cols=144 Identities=17% Similarity=0.212 Sum_probs=80.6
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
.|.-|.+++..+++ + +-+++.|+.|.|||.+.-+.+...+.. ...+++|.+|+.+-+..+++.+.+-....
T Consensus 53 ~~~~Q~~ai~~i~~----~---~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 125 (237)
T 3bor_A 53 PSAIQQRAIIPCIK----G---YDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYM 125 (237)
T ss_dssp CCHHHHHHHHHHHT----T---CCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHhC----C---CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhc
Confidence 58899999876543 2 358899999999998866555544432 23579999999999888887765432222
Q ss_pred cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccc--------cccCCCcEEEEecccCC----CHHHHHHh
Q 003262 135 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEH--------EKLAQVELLVIDEAAAI----PLPVVRSL 202 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~--------~~l~~adLLvIDEAAAI----Plpllk~L 202 (835)
+..- ....+.. .....+.+ .+.....|-+..|+-+ ..+...+++|||||=.+ -.+.+..+
T Consensus 126 ~~~~----~~~~g~~-~~~~~~~~---l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i 197 (237)
T 3bor_A 126 GATC----HACIGGT-NVRNEMQK---LQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEI 197 (237)
T ss_dssp TCCE----EEECC-----------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHH
T ss_pred CceE----EEEECCC-chHHHHHH---HhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHH
Confidence 2111 1111100 00000000 0011123444444332 12456899999999754 23445555
Q ss_pred hc-----CCeEEEEeecc
Q 003262 203 LG-----PYLVFLSSTVN 215 (835)
Q Consensus 203 l~-----~y~vflsSTi~ 215 (835)
+. ..+++||.|..
T Consensus 198 ~~~~~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 198 FQKLNTSIQVVLLSATMP 215 (237)
T ss_dssp HHHSCTTCEEEEECSSCC
T ss_pred HHhCCCCCeEEEEEEecC
Confidence 52 23577888864
No 161
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.0008 Score=83.57 Aligned_cols=133 Identities=17% Similarity=0.145 Sum_probs=88.0
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccc
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 135 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lg 135 (835)
..|..|.+|+..+ .. ..-+++.|+.|.|||.+-.+++..++..| .+++||+|+.+-+...++-+.+-+...|
T Consensus 184 ~ltp~Q~~AI~~i----~~---g~dvLV~ApTGSGKTlva~l~i~~~l~~g-~rvlvl~PtraLa~Q~~~~l~~~~~~Vg 255 (1108)
T 3l9o_A 184 TLDPFQDTAISCI----DR---GESVLVSAHTSAGKTVVAEYAIAQSLKNK-QRVIYTSPIKALSNQKYRELLAEFGDVG 255 (1108)
T ss_dssp CCCHHHHHHHHHH----TT---TCCEEEECCSSSHHHHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHTSSEE
T ss_pred CCCHHHHHHHHHH----Hc---CCCEEEECCCCCChHHHHHHHHHHHHhcC-CeEEEEcCcHHHHHHHHHHHHHHhCCcc
Confidence 4578899998754 22 24689999999999999999998888776 5899999999999998887766554333
Q ss_pred ccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc--------ccCCCcEEEEecccCCCH----HHHHHhh
Q 003262 136 YKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIPL----PVVRSLL 203 (835)
Q Consensus 136 y~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~--------~l~~adLLvIDEAAAIPl----pllk~Ll 203 (835)
+ +.+... ......|-+..|.-+. .+...++||||||=.+.- +.+..++
T Consensus 256 l--------ltGd~~------------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii 315 (1108)
T 3l9o_A 256 L--------MTGDIT------------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETI 315 (1108)
T ss_dssp E--------ECSSCB------------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHH
T ss_pred E--------EeCccc------------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHH
Confidence 3 111100 0011234445554221 134578999999987742 2233333
Q ss_pred ---c--CCeEEEEeeccC
Q 003262 204 ---G--PYLVFLSSTVNG 216 (835)
Q Consensus 204 ---~--~y~vflsSTi~G 216 (835)
. ..+++||.|+.-
T Consensus 316 ~~l~~~~qvl~lSATipn 333 (1108)
T 3l9o_A 316 ILLPDKVRYVFLSATIPN 333 (1108)
T ss_dssp HHSCTTSEEEEEECSCSS
T ss_pred HhcCCCceEEEEcCCCCC
Confidence 3 236889999754
No 162
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.17 E-value=0.0004 Score=68.94 Aligned_cols=147 Identities=18% Similarity=0.177 Sum_probs=81.3
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
.|.-|.+++..+.+ + +.+++.|+.|.|||.+.-+.+...+.. +..+++|.+|+.+-+...++-+.+-...+
T Consensus 27 ~~~~Q~~~i~~~~~----~---~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 99 (219)
T 1q0u_A 27 PTEIQERIIPGALR----G---ESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFC 99 (219)
T ss_dssp CCHHHHHHHHHHHH----T---CCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHhC----C---CCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhc
Confidence 58899999876654 2 357899999999998876665554432 23479999999998888776654332222
Q ss_pred cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc--------ccCCCcEEEEecccCCC----HHHHHHh
Q 003262 135 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIP----LPVVRSL 202 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~--------~l~~adLLvIDEAAAIP----lpllk~L 202 (835)
+...........+... ..+.... . .....|-+..|+-+. .+...+++|||||=.+. ...+..+
T Consensus 100 ~~~~~~~~~~~~g~~~-~~~~~~~---~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i 174 (219)
T 1q0u_A 100 PKDRMIVARCLIGGTD-KQKALEK---L-NVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQI 174 (219)
T ss_dssp CGGGCCCEEEECCCSH-HHHTTCC---C-SSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHH
T ss_pred ccccceEEEEEeCCCC-HHHHHHH---c-CCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHH
Confidence 1100111111111000 0000000 0 001224444443221 24567999999996543 3445555
Q ss_pred hc-----CCeEEEEeecc
Q 003262 203 LG-----PYLVFLSSTVN 215 (835)
Q Consensus 203 l~-----~y~vflsSTi~ 215 (835)
+. ..+++||.|..
T Consensus 175 ~~~~~~~~~~l~~SAT~~ 192 (219)
T 1q0u_A 175 AARMPKDLQMLVFSATIP 192 (219)
T ss_dssp HHTSCTTCEEEEEESCCC
T ss_pred HHhCCcccEEEEEecCCC
Confidence 53 23678899974
No 163
>2wpx_A ORF14; transferase, acetyl transferase, antibiotic biosynthesis; HET: ACO; 2.31A {Streptomyces clavuligerus} PDB: 2wpw_A*
Probab=97.16 E-value=0.00089 Score=69.36 Aligned_cols=31 Identities=13% Similarity=-0.114 Sum_probs=28.5
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.+.|..|+|+|+|||+|+|++++..+.++..
T Consensus 263 ~~~i~~~~V~p~~rg~G~g~~L~~~~~~~~~ 293 (339)
T 2wpx_A 263 YALQGMTVVHREHRGHALGTLLKLANLEYVL 293 (339)
T ss_dssp EEEEEEEEECGGGTTSCHHHHHHHHHHHHHH
T ss_pred eEEEeeEEECHHhcCccHHHHHHHHHHHHHH
Confidence 4789999999999999999999999988765
No 164
>2vzy_A RV0802C; transferase, GCN5-related N-acetyltransferase, succinyltransferase; HET: FLC; 2.00A {Mycobacterium tuberculosis} PDB: 2vzz_A*
Probab=97.15 E-value=0.0012 Score=64.28 Aligned_cols=67 Identities=13% Similarity=0.044 Sum_probs=48.7
Q ss_pred EEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccCC
Q 003262 420 RIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQP 499 (835)
Q Consensus 420 RIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~~ 499 (835)
.+.|+|+|||+|||+++++.+.++.....
T Consensus 110 g~~v~~~~rgkGig~~ll~~l~~~a~~~~--------------------------------------------------- 138 (218)
T 2vzy_A 110 GSWLGLRYQGHGYGTEMRAAVLYFAFAEL--------------------------------------------------- 138 (218)
T ss_dssp EEEECGGGTTSSHHHHHHHHHHHHHHHTS---------------------------------------------------
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHhhC---------------------------------------------------
Confidence 57899999999999999999999874211
Q ss_pred CCcce-EEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCc
Q 003262 500 EKLNY-IGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEH 540 (835)
Q Consensus 500 ~~lDy-lGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEh 540 (835)
+++. ....+--+....+||+|+||..+...... ..|+.
T Consensus 139 -g~~~i~~~v~~~N~~a~~~y~k~GF~~~g~~~~~--~~g~~ 177 (218)
T 2vzy_A 139 -EAQVATSRSFVDNPASIAVSRRNGYRDNGLDRVA--REGAM 177 (218)
T ss_dssp -CCSEEEEEEETTCHHHHHHHHHTTCEEEEEEEEE--ETTEE
T ss_pred -CceEEEEEeccCCHHHHHHHHHCCCEEeeeeecc--cCCce
Confidence 0111 11123337889999999999999877665 45753
No 165
>3g3s_A GCN5-related N-acetyltransferase; ZP_00874857.1, acetyltransferase (GNAT) family, structural joint center for structural genomics, JCSG; HET: MSE; 1.80A {Streptococcus suis}
Probab=97.14 E-value=0.00049 Score=71.79 Aligned_cols=30 Identities=13% Similarity=0.073 Sum_probs=26.9
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+++|+|+|+|||+|||+++++.+.++..
T Consensus 184 ~~ei~i~v~p~~rGkGlg~~Ll~~li~~a~ 213 (249)
T 3g3s_A 184 GIEIEVDTREDYRGLGLAKACAAQLILACL 213 (249)
T ss_dssp EEEEEEEECGGGTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChHhcCCCHHHHHHHHHHHHHH
Confidence 356799999999999999999999998874
No 166
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.13 E-value=0.0012 Score=69.62 Aligned_cols=141 Identities=19% Similarity=0.232 Sum_probs=81.4
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
.|.-|.+++..+++ +. .+.+++.|+.|.|||.+.-+++...+.. ...+++|.+|+.+-+...++.+.+-....
T Consensus 28 ~~~~Q~~~i~~~~~----~~-~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 102 (395)
T 3pey_A 28 PSKIQERALPLLLH----NP-PRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFT 102 (395)
T ss_dssp CCHHHHHHHHHHHC----SS-CCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHc----CC-CCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhccc
Confidence 68899999865543 22 2468999999999998877666555432 23479999999998888877654422212
Q ss_pred cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc--------ccCCCcEEEEecccCCCH-----HHHHH
Q 003262 135 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIPL-----PVVRS 201 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~--------~l~~adLLvIDEAAAIPl-----pllk~ 201 (835)
+... ....... +... ......|-+..|+-+. .+...+++|||||=.+.- ..+..
T Consensus 103 ~~~~----~~~~~~~--~~~~-------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 169 (395)
T 3pey_A 103 KITS----QLIVPDS--FEKN-------KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIR 169 (395)
T ss_dssp CCCE----EEESTTS--SCTT-------SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHH
T ss_pred CeeE----EEEecCc--hhhh-------ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHH
Confidence 1111 1111100 0000 0001234444444331 245789999999975432 33333
Q ss_pred hhc-----CCeEEEEeecc
Q 003262 202 LLG-----PYLVFLSSTVN 215 (835)
Q Consensus 202 Ll~-----~y~vflsSTi~ 215 (835)
+.. ..+++||.|..
T Consensus 170 ~~~~~~~~~~~i~~SAT~~ 188 (395)
T 3pey_A 170 VKRFLPKDTQLVLFSATFA 188 (395)
T ss_dssp HHHTSCTTCEEEEEESCCC
T ss_pred HHHhCCCCcEEEEEEecCC
Confidence 332 23678899963
No 167
>2ozg_A GCN5-related N-acetyltransferase; YP_325469.1, acetyltransfe (GNAT) family, structural genomics, joint center for struct genomics, JCSG; HET: COA; 2.00A {Anabaena variabilis} SCOP: d.106.1.4 d.108.1.10
Probab=97.13 E-value=0.00052 Score=73.96 Aligned_cols=32 Identities=13% Similarity=0.044 Sum_probs=28.7
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|..++|||+|||+|||+++++.+.+++.
T Consensus 78 ~~~~i~~v~V~p~~Rg~Gig~~Ll~~~~~~~~ 109 (396)
T 2ozg_A 78 PMAGIAAVGIAPEYRGDGAAIALIQHTLQEIS 109 (396)
T ss_dssp EEEEEEEEEECGGGTTSSHHHHHHHHHHHHHH
T ss_pred ceeEEEEEEEChhhccCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999988764
No 168
>2fsr_A Acetyltransferase; alpha-beta-sandwich, structural genomics, PSI, protein struc initiative, midwest center for structural genomics; HET: PEG; 1.52A {Agrobacterium tumefaciens str} SCOP: d.108.1.1
Probab=97.10 E-value=0.0013 Score=63.47 Aligned_cols=74 Identities=8% Similarity=-0.129 Sum_probs=50.5
Q ss_pred EEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccCC
Q 003262 420 RIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQP 499 (835)
Q Consensus 420 RIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~~ 499 (835)
.++|+|+|||+|||+++++.+.++...... +
T Consensus 116 ~~~v~p~~rg~Gig~~ll~~~~~~a~~~~g-~------------------------------------------------ 146 (195)
T 2fsr_A 116 GWLLYEGHEGRGYAAEAAVALRDWAFETLN-L------------------------------------------------ 146 (195)
T ss_dssp EEEECTTCTTSSHHHHHHHHHHHHHHHHSC-C------------------------------------------------
T ss_pred EEEEChhHcCCChHHHHHHHHHHHHHhhCC-c------------------------------------------------
Confidence 679999999999999999999998742100 0
Q ss_pred CCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccC
Q 003262 500 EKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPL 548 (835)
Q Consensus 500 ~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L 548 (835)
..+ ++. .+--+....+||+|+||..+..... .|....++-.+.
T Consensus 147 ~~i-~l~-v~~~N~~a~~~y~k~GF~~~g~~~~----~g~~~~~y~~~~ 189 (195)
T 2fsr_A 147 PTL-VSY-VSPQNRKSAAVAERIGGTLDPLAPR----SDPEDLVYRYHQ 189 (195)
T ss_dssp SCE-EEE-ECTTCHHHHHHHHHTTCEECTTSCC----SSTTCEEEEECC
T ss_pred cEE-EEE-ECCCCHHHHHHHHHCCCEEEeeecc----CCCcceeEEEch
Confidence 000 122 2233788999999999998765332 356666665544
No 169
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.10 E-value=0.0014 Score=66.56 Aligned_cols=144 Identities=21% Similarity=0.247 Sum_probs=83.1
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC-----------CCcEEEecCChHhHHHHH
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-----------YSNIFVTAPSPENLKTLF 124 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g-----------~~nI~VTAPs~enl~tlF 124 (835)
..|.-|.+++..+++ + +-+++.|+.|.|||.+.-+.+...+..+ ..+++|.+|+.+-+...+
T Consensus 45 ~~~~~Q~~~i~~i~~----~---~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 117 (253)
T 1wrb_A 45 RPTPIQKNAIPAILE----H---RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQIL 117 (253)
T ss_dssp SCCHHHHHHHHHHHT----T---CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----C---CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHH
Confidence 358899999875543 2 3578999999999998877776665432 247999999999888887
Q ss_pred HHHHhhhccccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc--------ccCCCcEEEEecccCCC-
Q 003262 125 EFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIP- 195 (835)
Q Consensus 125 ef~~kgl~~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~--------~l~~adLLvIDEAAAIP- 195 (835)
+.+.+-....+.. ...+.+... .......+ .....|-+..|+-+. .+...+++|||||=.+.
T Consensus 118 ~~~~~~~~~~~~~----~~~~~g~~~-~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~ 188 (253)
T 1wrb_A 118 SESQKFSLNTPLR----SCVVYGGAD-THSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLD 188 (253)
T ss_dssp HHHHHHHTTSSCC----EEEECSSSC-SHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHH
T ss_pred HHHHHHhccCCce----EEEEECCCC-HHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHh
Confidence 6654322111111 111111100 00000000 001123344444331 24567899999997653
Q ss_pred ---HHHHHHhhc----C-----CeEEEEeecc
Q 003262 196 ---LPVVRSLLG----P-----YLVFLSSTVN 215 (835)
Q Consensus 196 ---lpllk~Ll~----~-----y~vflsSTi~ 215 (835)
-+.++.++. + .+++||.|..
T Consensus 189 ~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 189 MGFEPQIRKIIEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp TTCHHHHHHHHHSSCCCCGGGCEEEEEESSCC
T ss_pred CchHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Confidence 456666664 1 2677899964
No 170
>1p0h_A Hypothetical protein RV0819; GNAT fold, acetyltransferase, coenzyme A complex, MSHD, TRAN; HET: COA ACO; 1.60A {Mycobacterium tuberculosis} SCOP: d.108.1.1 PDB: 1ozp_A* 2c27_A*
Probab=97.08 E-value=0.001 Score=68.69 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=28.4
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.+.|..++|+|+|||+|||+.++..+.+++.
T Consensus 235 ~~~i~~~~V~p~~rg~Glg~~ll~~~~~~~~ 265 (318)
T 1p0h_A 235 LGEVYVLGVDPAAQRRGLGQMLTSIGIVSLA 265 (318)
T ss_dssp EEEEEEEEECGGGCSSSHHHHHHHHHHHHHH
T ss_pred eEEEEEEEECHHhccCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999998864
No 171
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=97.08 E-value=0.0022 Score=73.36 Aligned_cols=150 Identities=19% Similarity=0.154 Sum_probs=86.7
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC------CcEEEecCChHhHHHHHHHHHh
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGY------SNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~------~nI~VTAPs~enl~tlFef~~k 129 (835)
..|.-|.+++..++. + ..+-+++.|+.|.|||.+-.+.+...+..+. ..++|.+|+.+-+..+.+.+.+
T Consensus 43 ~~~~~Q~~~i~~il~----~-~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~ 117 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS----S-EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 117 (579)
T ss_dssp SCCHHHHHHHHHHHC----S-SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc----c-CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHH
Confidence 368999999876542 1 2357899999999999998888777665432 3699999999988887776654
Q ss_pred hhccc-cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc---------ccCCCcEEEEecccCCC----
Q 003262 130 GFNAI-EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE---------KLAQVELLVIDEAAAIP---- 195 (835)
Q Consensus 130 gl~~l-gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~---------~l~~adLLvIDEAAAIP---- 195 (835)
-++.. +... .....+.+. .++...+. -....+..|-+..|+-+. .+...++||||||=.+.
T Consensus 118 ~~~~~~~~~~-~~~~~~~gg-~~~~~~~~---~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf 192 (579)
T 3sqw_A 118 IHDMNYGLKK-YACVSLVGG-TDFRAAMN---KMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGF 192 (579)
T ss_dssp HHHHCGGGTT-SCEEEECTT-SCHHHHHH---HHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTT
T ss_pred HHhhcccccc-eEEEEEECC-ccHHHHHH---HHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCC
Confidence 22110 1110 000001000 00000000 000112235556665442 24678999999998765
Q ss_pred HHHHHHhhc------------CCeEEEEeecc
Q 003262 196 LPVVRSLLG------------PYLVFLSSTVN 215 (835)
Q Consensus 196 lpllk~Ll~------------~y~vflsSTi~ 215 (835)
.+.+..++. ..+++||.|..
T Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~ 224 (579)
T 3sqw_A 193 RDDLETISGILNEKNSKSADNIKTLLFSATLD 224 (579)
T ss_dssp HHHHHHHHHHHHHHCSSCTTCCEEEEEESSCC
T ss_pred HHHHHHHHHHhhhhhcccccCceEEEEeccCC
Confidence 455554442 13677888864
No 172
>1sqh_A Hypothetical protein CG14615-PA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Drosophila melanogaster} SCOP: d.108.1.5
Probab=97.06 E-value=0.00094 Score=71.26 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=25.5
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 417 RIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 417 RIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.|..++|+|+|||+|||+++++.+.++..
T Consensus 233 ~i~~l~V~p~~rgkGiG~~ll~~l~~~~~ 261 (312)
T 1sqh_A 233 GLGMLQVLPKAERRGLGGLLAAAMSREIA 261 (312)
T ss_dssp SEEEEEECGGGCSSSHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 46689999999999999999999988753
No 173
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=97.06 E-value=0.006 Score=67.85 Aligned_cols=71 Identities=13% Similarity=0.027 Sum_probs=52.6
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC----CCcEEEecCChHhHHHHHHHHHhh
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG----YSNIFVTAPSPENLKTLFEFVCKG 130 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g----~~nI~VTAPs~enl~tlFef~~kg 130 (835)
...|.-|.+++..+++ + .-+++.|+.|.|||.+-.+.+...+..+ ..+++|.+|+.+=+...++.+.+-
T Consensus 6 ~~~~~~Q~~~i~~~~~----~---~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN----G---KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp --CCHHHHHHHHHHHT----T---CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc----C---CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3468889998876543 2 3478999999999999888887777653 457999999988877777666554
Q ss_pred hc
Q 003262 131 FN 132 (835)
Q Consensus 131 l~ 132 (835)
+.
T Consensus 79 ~~ 80 (556)
T 4a2p_A 79 FE 80 (556)
T ss_dssp HG
T ss_pred hc
Confidence 33
No 174
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=97.04 E-value=0.00088 Score=71.89 Aligned_cols=143 Identities=24% Similarity=0.237 Sum_probs=82.3
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-cC-------------------CCcEEEecCC
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA-AG-------------------YSNIFVTAPS 116 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~-~g-------------------~~nI~VTAPs 116 (835)
.|.-|.+++..+. ++ +-+++.|+.|.|||.+.-+.+...+. .+ +..++|.+|+
T Consensus 38 ~~~~Q~~~i~~i~----~~---~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 110 (417)
T 2i4i_A 38 PTPVQKHAIPIIK----EK---RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPT 110 (417)
T ss_dssp CCHHHHHHHHHHH----TT---CCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSS
T ss_pred CCHHHHHHHHHHc----cC---CCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCc
Confidence 6889999986543 32 35789999999999876665554432 22 1469999999
Q ss_pred hHhHHHHHHHHHhhhccccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc--------ccCCCcEEEE
Q 003262 117 PENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVI 188 (835)
Q Consensus 117 ~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~--------~l~~adLLvI 188 (835)
.+-+..+++.+.+-....+.. ...+.+... ....+.. ......|-+..|+-+. .+...+++||
T Consensus 111 ~~L~~q~~~~~~~~~~~~~~~----~~~~~g~~~-~~~~~~~----~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iVi 181 (417)
T 2i4i_A 111 RELAVQIYEEARKFSYRSRVR----PCVVYGGAD-IGQQIRD----LERGCHLLVATPGRLVDMMERGKIGLDFCKYLVL 181 (417)
T ss_dssp HHHHHHHHHHHHHHHTTSSCC----EEEECSSSC-HHHHHHH----HTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred HHHHHHHHHHHHHHhCcCCce----EEEEECCCC-HHHHHHH----hhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEE
Confidence 999888887765422222211 001111000 0000000 0011234455554332 2456899999
Q ss_pred ecccCCC----HHHHHHhhc---------CCeEEEEeecc
Q 003262 189 DEAAAIP----LPVVRSLLG---------PYLVFLSSTVN 215 (835)
Q Consensus 189 DEAAAIP----lpllk~Ll~---------~y~vflsSTi~ 215 (835)
|||=.+. .+.++.++. ...++||.|..
T Consensus 182 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~ 221 (417)
T 2i4i_A 182 DEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFP 221 (417)
T ss_dssp SSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCC
T ss_pred EChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCC
Confidence 9997653 466777764 12577888863
No 175
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=97.02 E-value=0.0038 Score=76.80 Aligned_cols=158 Identities=18% Similarity=0.178 Sum_probs=95.8
Q ss_pred HHHHHHhcccCCCCccccccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 36 LKDLKEQLCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 36 l~~lk~~l~~~~p~g~Lv~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
..++...+....|. ..+..|.+|+..+. ++ +.+++.|+.|.|||.+--+++..+...| .+++|++|
T Consensus 25 f~~l~~~~~~~~~f------~l~~~Q~~aI~~il----~g---~~vlv~apTGsGKTlv~~~~i~~~~~~g-~~vlvl~P 90 (997)
T 4a4z_A 25 FDELIPNPARSWPF------ELDTFQKEAVYHLE----QG---DSVFVAAHTSAGKTVVAEYAIAMAHRNM-TKTIYTSP 90 (997)
T ss_dssp HHHHCSSCSCCCSS------CCCHHHHHHHHHHH----TT---CEEEEECCTTSCSHHHHHHHHHHHHHTT-CEEEEEES
T ss_pred hhhhhHhHHHhCCC------CCCHHHHHHHHHHH----cC---CCEEEEECCCCcHHHHHHHHHHHHHhcC-CeEEEEeC
Confidence 33444444455443 36899999887553 32 4689999999999976656666665555 57999999
Q ss_pred ChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc--------ccCCCcEEE
Q 003262 116 SPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLV 187 (835)
Q Consensus 116 s~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~--------~l~~adLLv 187 (835)
..+-+...++-+.+-+.. ....++.+.. .......|-|..|+-+. .+...+++|
T Consensus 91 traLa~Q~~~~l~~~~~~------~~v~~l~G~~------------~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvV 152 (997)
T 4a4z_A 91 IKALSNQKFRDFKETFDD------VNIGLITGDV------------QINPDANCLIMTTEILRSMLYRGADLIRDVEFVI 152 (997)
T ss_dssp CGGGHHHHHHHHHTTC--------CCEEEECSSC------------EECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEE
T ss_pred CHHHHHHHHHHHHHHcCC------CeEEEEeCCC------------ccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEE
Confidence 999999988876653321 1111111110 01122346666665431 245689999
Q ss_pred EecccCCC-------HHHHHHhhcC--CeEEEEeeccCCcccCCchhHHHHHHhh
Q 003262 188 IDEAAAIP-------LPVVRSLLGP--YLVFLSSTVNGYEGTGRSLSLKLLHQLE 233 (835)
Q Consensus 188 IDEAAAIP-------lpllk~Ll~~--y~vflsSTi~GYEGTGR~fsLKl~~~L~ 233 (835)
||||=.+. +.-+...+.+ .+|+||.|+.-.+ .|..++.
T Consensus 153 iDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~~--------ef~~~l~ 199 (997)
T 4a4z_A 153 FDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTY--------EFANWIG 199 (997)
T ss_dssp ECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTHH--------HHHHHHH
T ss_pred EECcccccccchHHHHHHHHHhcccCCCEEEEcCCCCChH--------HHHHHHh
Confidence 99997762 2222223333 3688999985332 4566664
No 176
>3n7z_A Acetyltransferase, GNAT family; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.75A {Bacillus anthracis}
Probab=96.99 E-value=0.00068 Score=73.60 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=28.5
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|..++|||+|||+|||+++|+.+.++..
T Consensus 75 ~~~~i~~v~V~p~~Rg~Gig~~Ll~~~~~~~~ 106 (388)
T 3n7z_A 75 KMGGVAGVATYPEYRRSGYVKELLQHSLQTMK 106 (388)
T ss_dssp EEEEEEEEEECGGGGGGCHHHHHHHHHHHHHH
T ss_pred EeeEEEEEEECHHHCCCChHHHHHHHHHHHHH
Confidence 45689999999999999999999999888764
No 177
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.98 E-value=0.00043 Score=69.50 Aligned_cols=66 Identities=17% Similarity=0.133 Sum_probs=48.5
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCChHhHHHHHHHHHh
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAPs~enl~tlFef~~k 129 (835)
.|.-|.+++..+. ++ +-+++.|+.|.|||.+..+.+...+.. +..+++|.+|+.+-+...++-+.+
T Consensus 47 ~~~~Q~~~i~~~~----~~---~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 114 (230)
T 2oxc_A 47 PSPVQLKAIPLGR----CG---LDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITA 114 (230)
T ss_dssp CCHHHHHHHHHHH----TT---CCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh----CC---CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHH
Confidence 5889999987543 22 358899999999998876665554422 235799999999988887766543
No 178
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=96.96 E-value=0.0012 Score=68.13 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=52.0
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc------CCCcEEEecCChHhHHHHHHHHHhh
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA------GYSNIFVTAPSPENLKTLFEFVCKG 130 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~------g~~nI~VTAPs~enl~tlFef~~kg 130 (835)
.|.-|.+++..+++ + +-+++.|+.|.|||.+--+++...+.. +-..++|.+|+.+-+...++.+.+-
T Consensus 77 ~~~~Q~~~i~~~~~----~---~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 149 (262)
T 3ly5_A 77 MTEIQHKSIRPLLE----G---RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKEL 149 (262)
T ss_dssp CCHHHHHHHHHHHH----T---CCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----C---CcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 68899999876654 2 347899999999999877776655543 2346999999999998888777654
Q ss_pred h
Q 003262 131 F 131 (835)
Q Consensus 131 l 131 (835)
+
T Consensus 150 ~ 150 (262)
T 3ly5_A 150 M 150 (262)
T ss_dssp T
T ss_pred H
Confidence 3
No 179
>3pzj_A Probable acetyltransferases; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: MSE; 1.85A {Chromobacterium violaceum}
Probab=96.94 E-value=0.0017 Score=63.17 Aligned_cols=82 Identities=15% Similarity=-0.022 Sum_probs=56.3
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccc
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHL 494 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l 494 (835)
.+.|-.+.|+|+|||+|||+++++.+.+|..... +. +
T Consensus 119 ~~ei~~~~v~~~~~g~Gig~~ll~~l~~~a~~~g--~~-------------~---------------------------- 155 (209)
T 3pzj_A 119 AIEIGHVNFSPALRRTRLATEAVFLLLKTAFELG--YR-------------R---------------------------- 155 (209)
T ss_dssp EEEEEEEEECTTTTTSHHHHHHHHHHHHHHHHTT--CS-------------E----------------------------
T ss_pred eEEEEEEEECHHHhcCCHHHHHHHHHHHHHHHcC--Cc-------------E----------------------------
Confidence 3567777799999999999999999999874110 00 0
Q ss_pred cccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccC
Q 003262 495 RERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPL 548 (835)
Q Consensus 495 ~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L 548 (835)
=++.| +--+....+||+|+||..+..........|..--+++-.+
T Consensus 156 --------i~l~v-~~~N~~a~~~y~k~GF~~~g~~~~~~~~~g~~~d~~~~~l 200 (209)
T 3pzj_A 156 --------CEWRC-DSRNAASAAAARRFGFQFEGTLRQAMVVKRRNRDTHVFSM 200 (209)
T ss_dssp --------EEEEE-ETTCHHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred --------EEEee-cCCCHHHHHHHHHCCCEEeeeecceEecCCceeeeEEEEE
Confidence 01222 2337889999999999999887766555675443333333
No 180
>2i00_A Acetyltransferase, GNAT family; structural genomics, PSI-2, structure initiative, midwest center for structural genomic transferase; 2.30A {Enterococcus faecalis} SCOP: d.106.1.4 d.108.1.10
Probab=96.94 E-value=0.00074 Score=73.39 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=28.9
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|..++|||+|||+|||+++|+.+.+.+.
T Consensus 90 ~~~~i~~v~V~P~~Rg~Gig~~Ll~~~l~~~~ 121 (406)
T 2i00_A 90 KMGGVTGVGTYPEYANHGLMKDLIQTALEEMR 121 (406)
T ss_dssp EEEEEEEEEECGGGTTSCHHHHHHHHHHHHHH
T ss_pred EeccEEEEEEChhhCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999888764
No 181
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.93 E-value=0.0031 Score=61.60 Aligned_cols=56 Identities=18% Similarity=0.100 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhccCC---CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 60 DQGKAVITFLDAILDKTL---RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~---r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
.|.+++..+.+.+..... ...++|+|+.|.|||+++-..+..+...|+.-++|++|
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 33 GRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp HHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred hHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 566666555554443211 16899999999999998865545555557766778775
No 182
>2z10_A Ribosomal-protein-alanine acetyltransferase; alpha/beta protein, acyltransferase, structural genomics, NPPSFA; HET: IYR; 1.77A {Thermus thermophilus} PDB: 2z0z_A* 2z11_A* 2zxv_A*
Probab=96.93 E-value=0.0055 Score=58.10 Aligned_cols=71 Identities=13% Similarity=-0.134 Sum_probs=48.6
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccc
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLR 495 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~ 495 (835)
+.|-.+.+ |+|||+|||+++++.+.++...+.
T Consensus 90 ~~i~~~~~-p~~rg~Gig~~ll~~~~~~a~~~~----------------------------------------------- 121 (194)
T 2z10_A 90 LELGTMLF-KPFWGSPANKEAKYLLLRHAFEVL----------------------------------------------- 121 (194)
T ss_dssp EEEEEEEC-GGGTTSSHHHHHHHHHHHHHHHTS-----------------------------------------------
T ss_pred EEEeeEEC-HhHhCCcHHHHHHHHHHHHHHhhC-----------------------------------------------
Confidence 34444344 999999999999999998874221
Q ss_pred ccCCCCcc--eEEEecCCCHHHHHHHHHCCCeEEEeeecc-cCCCCCc
Q 003262 496 ERQPEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNA-NAVTGEH 540 (835)
Q Consensus 496 e~~~~~lD--ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~-ne~TGEh 540 (835)
+++ ++.| +--+....+||+|+||..+...... ....|+.
T Consensus 122 -----g~~~i~~~v-~~~N~~a~~~y~k~GF~~~g~~~~~~~~~~g~~ 163 (194)
T 2z10_A 122 -----RAERVQFKV-DLRNERSQRALEALGAVREGVLRKNRRLPDGAF 163 (194)
T ss_dssp -----CCSEEEEEE-ETTCHHHHHHHHHHTCEEEEEEEEEEECTTSCE
T ss_pred -----CceEEEEEe-cCCCHHHHHHHHHcCCcEEEecccCEEcCCCeE
Confidence 011 1222 2337889999999999999887654 3446753
No 183
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=96.91 E-value=0.0012 Score=70.77 Aligned_cols=143 Identities=19% Similarity=0.216 Sum_probs=84.0
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
.+.-|.+++..+++ + +.+++.|+.|.|||.+.-+++...+.. ...+++|.+|+.+-+..+++.+.+-.+..
T Consensus 63 ~~~~Q~~~i~~~~~----~---~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 135 (414)
T 3eiq_A 63 PSAIQQRAILPCIK----G---YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM 135 (414)
T ss_dssp CCHHHHHHHHHHHT----T---CCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGS
T ss_pred CCHHHHHHhHHHhC----C---CCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhccc
Confidence 67889999866543 2 348999999999999877766655533 34579999999999888887765533333
Q ss_pred cccccccceeeecCCCC-CCcceeEeeeeeccceeEEeeCCcccc--------ccCCCcEEEEecccCC----CHHHHHH
Q 003262 135 EYKEHIDYDIVRSSNPD-LRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAI----PLPVVRS 201 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~-~~~aivrvni~~~hrq~Iqyi~P~d~~--------~l~~adLLvIDEAAAI----Plpllk~ 201 (835)
+..-+ ...+.. ....+ .........|-+..|+-+. .+...++||||||=.+ -...+..
T Consensus 136 ~~~~~------~~~~~~~~~~~~---~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~ 206 (414)
T 3eiq_A 136 GASCH------ACIGGTNVRAEV---QKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYD 206 (414)
T ss_dssp CCCEE------ECCCCTTHHHHH---HHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHH
T ss_pred CceEE------EEECCcchHHHH---HHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHH
Confidence 22211 000000 00000 0000122235555554331 2345789999999764 2345555
Q ss_pred hhc-----CCeEEEEeecc
Q 003262 202 LLG-----PYLVFLSSTVN 215 (835)
Q Consensus 202 Ll~-----~y~vflsSTi~ 215 (835)
++. ..+++||.|..
T Consensus 207 ~~~~~~~~~~~i~~SAT~~ 225 (414)
T 3eiq_A 207 IFQKLNSNTQVVLLSATMP 225 (414)
T ss_dssp HHTTSCTTCEEEEECSCCC
T ss_pred HHHhCCCCCeEEEEEEecC
Confidence 553 22677888873
No 184
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=96.91 E-value=0.0023 Score=68.42 Aligned_cols=143 Identities=17% Similarity=0.187 Sum_probs=80.9
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCChHhHHHHHHHHHhhhcc
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSPENLKTLFEFVCKGFNA 133 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAPs~enl~tlFef~~kgl~~ 133 (835)
..+.-|.+++..+.+ + +.+++.|+.|.|||.+.-+++...+.. +..+++|.+|+.+-+...++.+.+-+..
T Consensus 43 ~~~~~Q~~~i~~i~~----~---~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 115 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT----G---RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKH 115 (400)
T ss_dssp SCCHHHHHHHHHHHH----T---CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHhc----C---CCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 368899999876653 2 348899999999998765555444332 2347999999999888887766543332
Q ss_pred ccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccc--------cccCCCcEEEEecccCCC----HHHHHH
Q 003262 134 IEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEH--------EKLAQVELLVIDEAAAIP----LPVVRS 201 (835)
Q Consensus 134 lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~--------~~l~~adLLvIDEAAAIP----lpllk~ 201 (835)
++..- ....+... ..+.+.+ ......|-+..|+-+ ..+...+++|||||=.+. .+.+..
T Consensus 116 ~~~~~----~~~~g~~~-~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~ 186 (400)
T 1s2m_A 116 CGISC----MVTTGGTN-LRDDILR----LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQ 186 (400)
T ss_dssp TTCCE----EEECSSSC-HHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHH
T ss_pred cCceE----EEEeCCcc-hHHHHHH----hcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHH
Confidence 22211 00100000 0000000 001123444444432 124568999999998554 234555
Q ss_pred hhc-----CCeEEEEeec
Q 003262 202 LLG-----PYLVFLSSTV 214 (835)
Q Consensus 202 Ll~-----~y~vflsSTi 214 (835)
++. ..+++||.|.
T Consensus 187 i~~~~~~~~~~i~lSAT~ 204 (400)
T 1s2m_A 187 ILSFLPPTHQSLLFSATF 204 (400)
T ss_dssp HHTTSCSSCEEEEEESCC
T ss_pred HHHhCCcCceEEEEEecC
Confidence 542 2367788885
No 185
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.89 E-value=0.0031 Score=75.69 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=89.1
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccc
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 135 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lg 135 (835)
..|..|.+|+..+.+.+..+.. ..++|.|+.|.|||.+--+++..++..|+ .++|.+|+.+-+...++-+.+-+..+|
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~-~~~Ll~a~TGSGKTlvall~il~~l~~g~-qvlvlaPtr~La~Q~~~~l~~~~~~~g 445 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKP-MNRLLQGDVGSGKTVVAQLAILDNYEAGF-QTAFMVPTSILAIQHYRRTVESFSKFN 445 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSC-CCCEEECCSSSSHHHHHHHHHHHHHHHTS-CEEEECSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCHHHHHHHHHHHhhccccCC-CcEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHHHHHHhhhcC
Confidence 5799999999988876654432 35689999999999998888888877774 799999999988888877665554433
Q ss_pred ccccccceeeecCCCCCC-cceeEeeeeeccceeEEeeCCccc---cccCCCcEEEEecccCCCHHHHHHhh----cCCe
Q 003262 136 YKEHIDYDIVRSSNPDLR-KPIVRINIYRQHRQTIQYMEPHEH---EKLAQVELLVIDEAAAIPLPVVRSLL----GPYL 207 (835)
Q Consensus 136 y~e~~dy~i~~st~p~~~-~aivrvni~~~hrq~Iqyi~P~d~---~~l~~adLLvIDEAAAIPlpllk~Ll----~~y~ 207 (835)
..- .++.+...... ..+. .-.....-.|-+-.|.-+ ..+...+++|||||=.+....-..+. .+.+
T Consensus 446 i~v----~~l~G~~~~~~r~~~~--~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr~g~~qr~~l~~~~~~~~v 519 (780)
T 1gm5_A 446 IHV----ALLIGATTPSEKEKIK--SGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQREALMNKGKMVDT 519 (780)
T ss_dssp CCE----EECCSSSCHHHHHHHH--HHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC-----CCCCSSSSCCCE
T ss_pred ceE----EEEeCCCCHHHHHHHH--HHHhcCCCCEEEECHHHHhhhhhccCCceEEecccchhhHHHHHHHHHhCCCCCE
Confidence 221 11111000000 0000 000000112233333322 23567899999999988665543333 2456
Q ss_pred EEEEeec
Q 003262 208 VFLSSTV 214 (835)
Q Consensus 208 vflsSTi 214 (835)
++||.|.
T Consensus 520 L~mSATp 526 (780)
T 1gm5_A 520 LVMSATP 526 (780)
T ss_dssp EEEESSC
T ss_pred EEEeCCC
Confidence 7788884
No 186
>3tcv_A GCN5-related N-acetyltransferase; GRAM negative coccobacillus, brucellosis, acyl CO-A, arylami transferase; 1.75A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=96.88 E-value=0.0041 Score=63.17 Aligned_cols=84 Identities=15% Similarity=-0.052 Sum_probs=57.5
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccc
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHL 494 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l 494 (835)
.+.|-.+.|+|+|||+|||+++++.+.+|.-.+.. ..++
T Consensus 126 ~~eig~~~v~p~~rgkGig~~ll~~ll~~a~~~~g--------------~~~i--------------------------- 164 (246)
T 3tcv_A 126 VIEIGSIYWGPLISRRPAATEAQFLFMQYVFDVLG--------------YRRY--------------------------- 164 (246)
T ss_dssp EEEEEEEEECTTTTTSHHHHHHHHHHHHHHHHTSC--------------CSEE---------------------------
T ss_pred EEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHhcC--------------cEEE---------------------------
Confidence 35677777999999999999999999998532110 0000
Q ss_pred cccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCC
Q 003262 495 RERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLH 549 (835)
Q Consensus 495 ~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~ 549 (835)
++.| +--+....+||+|+||..+..........|+.--+++-.+.
T Consensus 165 ---------~l~v-~~~N~~s~~lyek~GF~~~G~~r~~~~~~G~~~D~~~~~ll 209 (246)
T 3tcv_A 165 ---------EWEC-HNENGPSRRAAERFGFRFEGIFRQHMVVKGRNRDTAWFSVL 209 (246)
T ss_dssp ---------EEEE-ETTCHHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ---------EEEc-cCCCHHHHHHHHHCCCEEEEEEEeeEEECCEEEEEEEEEeE
Confidence 1122 33378899999999999998877765566864444444443
No 187
>2hv2_A Hypothetical protein; PSI, protein structure initiative, midwest center for struct genomics, MCSG, structural genomics, unknown function; HET: EPE PG4; 2.40A {Enterococcus faecalis} SCOP: d.106.1.4 d.108.1.10
Probab=96.88 E-value=0.00092 Score=72.40 Aligned_cols=32 Identities=19% Similarity=0.006 Sum_probs=28.8
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|..++|||+|||+|||+++|+.+.+.+.
T Consensus 77 ~~~~i~~v~V~p~~Rg~Gig~~Ll~~~~~~~~ 108 (400)
T 2hv2_A 77 PMAGIGYVASYPEYRGEGGISAIMKEMLADLA 108 (400)
T ss_dssp EEEEEEEEEECTTCCSSCHHHHHHHHHHHHHH
T ss_pred EeccEeEEEEChhhcCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999887764
No 188
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.88 E-value=0.0086 Score=57.59 Aligned_cols=58 Identities=14% Similarity=0.210 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHHHHHhccC--CCcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcEEEecC
Q 003262 58 TLDQGKAVITFLDAILDKT--LRSTVALLAARGRGKSAALGLAIAGAI-AAGYSNIFVTAP 115 (835)
Q Consensus 58 T~DQakAl~~~~~~i~ek~--~r~~v~LTA~RGRGKSAaLGlaiA~ai-~~g~~nI~VTAP 115 (835)
+.+|.+++....+.+..-. ....+.|+|+.|.|||+++-..+..+. ..|+.-++++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 5678887766655443211 245899999999999998876555444 568766777743
No 189
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.0065 Score=74.89 Aligned_cols=134 Identities=20% Similarity=0.172 Sum_probs=85.8
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
...+.-|.+|+..+.. ...+++.|+.|.|||.+-.+++..++..| .+++|++|+.+-+...++-+.+-+...
T Consensus 85 f~L~~~Q~eai~~l~~-------g~~vLV~apTGSGKTlva~lai~~~l~~g-~rvL~l~PtkaLa~Q~~~~l~~~~~~v 156 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDR-------GESVLVSAHTSAGKTVVAEYAIAQSLKNK-QRVIYTSPIKALSNQKYRELLAEFGDV 156 (1010)
T ss_dssp SCCCHHHHHHHHHHHH-------TCEEEEECCTTSCHHHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHHSCE
T ss_pred CCCCHHHHHHHHHHHc-------CCCEEEECCCCCChHHHHHHHHHHHhccC-CeEEEECChHHHHHHHHHHHHHHhCCE
Confidence 3478899999876543 24689999999999999888888888776 589999999988888776665544332
Q ss_pred cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccc--------cccCCCcEEEEecccCCC----HHHHHHh
Q 003262 135 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEH--------EKLAQVELLVIDEAAAIP----LPVVRSL 202 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~--------~~l~~adLLvIDEAAAIP----lpllk~L 202 (835)
|+- +-|.. .++ ...|-+..|+-+ ..+...++||||||=.+. -..+..+
T Consensus 157 gll-tGd~~----~~~---------------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~i 216 (1010)
T 2xgj_A 157 GLM-TGDIT----INP---------------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEET 216 (1010)
T ss_dssp EEE-CSSCE----ECT---------------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHH
T ss_pred EEE-eCCCc----cCC---------------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHH
Confidence 221 00111 111 112333333211 123567899999998762 2233333
Q ss_pred ---hc--CCeEEEEeeccC
Q 003262 203 ---LG--PYLVFLSSTVNG 216 (835)
Q Consensus 203 ---l~--~y~vflsSTi~G 216 (835)
+. ..+++||.|+.-
T Consensus 217 l~~l~~~~~il~LSATi~n 235 (1010)
T 2xgj_A 217 IILLPDKVRYVFLSATIPN 235 (1010)
T ss_dssp HHHSCTTCEEEEEECCCTT
T ss_pred HHhcCCCCeEEEEcCCCCC
Confidence 22 347889999754
No 190
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.84 E-value=0.0036 Score=66.76 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=50.4
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC--CCcEEEecCChHhHHHHHHHHHh
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG--YSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g--~~nI~VTAPs~enl~tlFef~~k 129 (835)
.|.-|.+++..+++ +. .+.+++.|+.|.|||.+.-+++...+..+ ..+++|.+|+.+-+....+.+.+
T Consensus 48 ~~~~Q~~~i~~~~~----~~-~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 117 (412)
T 3fht_A 48 PSKIQENALPLMLA----EP-PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQ 117 (412)
T ss_dssp CCHHHHHHHHHHHS----SS-CCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc----CC-CCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHH
Confidence 68899999865543 21 24689999999999998777666555433 23799999999998888766543
No 191
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.82 E-value=0.0062 Score=69.64 Aligned_cols=69 Identities=14% Similarity=0.019 Sum_probs=44.8
Q ss_pred ccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC--------CCcEEEecCChHhHHHHH
Q 003262 54 KKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG--------YSNIFVTAPSPENLKTLF 124 (835)
Q Consensus 54 ~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g--------~~nI~VTAPs~enl~tlF 124 (835)
....+..|.+|+..+++.+..+. ..++|.++.|.|||.+.-.++..++..+ ..+|+|.+|+.+=+...+
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~--~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~ 252 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGK--KRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPK 252 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTC--SEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC---------
T ss_pred CCCchHHHHHHHHHHHHHHhcCC--CceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHH
Confidence 45789999999999999887653 4578899999999998544444455543 468999999887766655
No 192
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=96.82 E-value=0.00095 Score=78.46 Aligned_cols=141 Identities=17% Similarity=0.198 Sum_probs=88.8
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCcEEEecCChHhHHHHHHHHHhhhcccc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA-AGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 135 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~-~g~~nI~VTAPs~enl~tlFef~~kgl~~lg 135 (835)
.+.-|.+++... +.+ ...+++.|+.|.|||.+.-+++...+. .| .+|++++|..+-+...++-+ +.|..+|
T Consensus 24 l~~~Q~~~i~~~---~~~---~~~~lv~apTGsGKT~~~~l~il~~~~~~~-~~~l~i~P~raLa~q~~~~~-~~l~~~g 95 (720)
T 2zj8_A 24 FYPPQAEALKSG---ILE---GKNALISIPTASGKTLIAEIAMVHRILTQG-GKAVYIVPLKALAEEKFQEF-QDWEKIG 95 (720)
T ss_dssp CCHHHHHHHTTT---GGG---TCEEEEECCGGGCHHHHHHHHHHHHHHHHC-SEEEEECSSGGGHHHHHHHT-GGGGGGT
T ss_pred CCHHHHHHHHHH---hcC---CCcEEEEcCCccHHHHHHHHHHHHHHHhCC-CEEEEEcCcHHHHHHHHHHH-HHHHhcC
Confidence 578899988652 222 357899999999999998888876665 45 58999999999999988776 3444433
Q ss_pred ccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc--------ccCCCcEEEEecccCCC----HHHHHHhh
Q 003262 136 YKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIP----LPVVRSLL 203 (835)
Q Consensus 136 y~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~--------~l~~adLLvIDEAAAIP----lpllk~Ll 203 (835)
.+ +...++ +....- + ......|-|..|+-+. .+...+++|||||=.+. -+.+..++
T Consensus 96 ~~------v~~~~G-~~~~~~-~----~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll 163 (720)
T 2zj8_A 96 LR------VAMATG-DYDSKD-E----WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVIL 163 (720)
T ss_dssp CC------EEEECS-CSSCCC-G----GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHH
T ss_pred CE------EEEecC-CCCccc-c----ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHH
Confidence 22 111111 000000 0 0113346667775431 14567899999998763 23344433
Q ss_pred -----cCCeEEEEeeccCC
Q 003262 204 -----GPYLVFLSSTVNGY 217 (835)
Q Consensus 204 -----~~y~vflsSTi~GY 217 (835)
...+|+||.|+.-+
T Consensus 164 ~~l~~~~~ii~lSATl~n~ 182 (720)
T 2zj8_A 164 AHMLGKAQIIGLSATIGNP 182 (720)
T ss_dssp HHHBTTBEEEEEECCCSCH
T ss_pred HHhhcCCeEEEEcCCcCCH
Confidence 24478899998543
No 193
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.81 E-value=0.0031 Score=61.32 Aligned_cols=61 Identities=10% Similarity=0.021 Sum_probs=45.6
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC-----CCcEEEecCChHhHHH
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-----YSNIFVTAPSPENLKT 122 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g-----~~nI~VTAPs~enl~t 122 (835)
...+.-|.+++..+++ + ..+++.|+.|.|||.+.-+.+...+..+ ..+++|.+|+.+-+..
T Consensus 32 ~~l~~~Q~~~i~~~~~----~---~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q 97 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALE----G---KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQ 97 (216)
T ss_dssp CCCCHHHHHHHHHHHT----T---CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHH
T ss_pred CCchHHHHHHHHHHhc----C---CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHH
Confidence 3578899999876543 2 3578999999999998876666555431 3579999999887666
No 194
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=96.80 E-value=0.0074 Score=63.38 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=25.9
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 417 RIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 417 RIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
-.+.|+|+|+|||+|||+++++.+.+|..
T Consensus 234 ~e~~~~v~~~~rg~Gig~~ll~~~~~~a~ 262 (333)
T 4ava_A 234 AEIAFTVADAYQGRGIGSFLIGALSVAAR 262 (333)
T ss_dssp EEEEEEECGGGTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEECHHhcCCCHHHHHHHHHHHHHH
Confidence 34579999999999999999999999874
No 195
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.80 E-value=0.0055 Score=63.96 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=81.6
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcEEEecCChHhHHHHHHHHHhhhcccc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA-GYSNIFVTAPSPENLKTLFEFVCKGFNAIE 135 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~-g~~nI~VTAPs~enl~tlFef~~kgl~~lg 135 (835)
.+.-|.+++..+++ + ++.+++.|+.|.|||.+.-+.+...+.. +..+++|.+|+.+-+....+-+.+-+...+
T Consensus 29 ~~~~Q~~~i~~~~~----~--~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 102 (367)
T 1hv8_A 29 PTDIQMKVIPLFLN----D--EYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKN 102 (367)
T ss_dssp CCHHHHHHHHHHHH----T--CSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSC
T ss_pred CCHHHHHHHHHHhC----C--CCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCC
Confidence 68899999876653 2 2468899999999998876655554433 245799999999888887776654332211
Q ss_pred ccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc--------ccCCCcEEEEecccCCC----HHHHHHhh
Q 003262 136 YKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIP----LPVVRSLL 203 (835)
Q Consensus 136 y~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~--------~l~~adLLvIDEAAAIP----lpllk~Ll 203 (835)
.. .....+... ..... . ......|-+..|+.+. .+...+++|||||=.+. ...+..++
T Consensus 103 ~~----v~~~~~~~~-~~~~~---~--~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~ 172 (367)
T 1hv8_A 103 LK----IAKIYGGKA-IYPQI---K--ALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKIL 172 (367)
T ss_dssp CC----EEEECTTSC-HHHHH---H--HHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHH
T ss_pred ce----EEEEECCcc-hHHHH---h--hcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHH
Confidence 11 110111000 00000 0 0001224444444332 24567999999997642 34455554
Q ss_pred c-----CCeEEEEeecc
Q 003262 204 G-----PYLVFLSSTVN 215 (835)
Q Consensus 204 ~-----~y~vflsSTi~ 215 (835)
. ..+++||.|..
T Consensus 173 ~~~~~~~~~i~~SAT~~ 189 (367)
T 1hv8_A 173 NACNKDKRILLFSATMP 189 (367)
T ss_dssp HTSCSSCEEEEECSSCC
T ss_pred HhCCCCceEEEEeeccC
Confidence 2 23677888863
No 196
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.80 E-value=0.015 Score=54.39 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Q 003262 62 GKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGA 102 (835)
Q Consensus 62 akAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~a 102 (835)
.+.+..+.+.+..+. ...++|+|++|.|||+++-..+..+
T Consensus 28 ~~~~~~l~~~l~~~~-~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 28 DEEIRRTIQVLQRRT-KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp HHHHHHHHHHHTSSS-SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCC-CCceEEECCCCCCHHHHHHHHHHHH
Confidence 334555555555433 4678999999999999886444433
No 197
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.77 E-value=0.002 Score=68.12 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=47.5
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCChHhHHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSPENLKTLFEFVC 128 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAPs~enl~tlFef~~ 128 (835)
.|.-|.+|+-.+ ..+. .+-+++.|+.|.|||.+--+.+...+.. +...++|.+|+.+-+..+++.+.
T Consensus 115 pt~iQ~~ai~~i----l~~~-~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~ 183 (300)
T 3fmo_B 115 PSKIQENALPLM----LAEP-PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIE 183 (300)
T ss_dssp CCHHHHHHHHHH----TSSS-CCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH----HcCC-CCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHH
Confidence 456688887544 3331 2468999999999999876666554433 23369999999999888876654
No 198
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=96.74 E-value=0.0056 Score=69.20 Aligned_cols=150 Identities=19% Similarity=0.156 Sum_probs=86.8
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC------CcEEEecCChHhHHHHHHHHHh
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGY------SNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~------~nI~VTAPs~enl~tlFef~~k 129 (835)
..|.-|.+++..++. + ..+-+++.|+.|.|||.+-.+.+...+..+. ..++|.+|+.+-+..+++.+.+
T Consensus 94 ~~~~~Q~~~i~~~l~----~-~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~ 168 (563)
T 3i5x_A 94 GLTPVQQKTIKPILS----S-EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 168 (563)
T ss_dssp SCCHHHHHHHHHHHS----S-SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc----C-CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHH
Confidence 368899999876541 1 2457899999999999988777766665432 3699999999998888777654
Q ss_pred hhcc-ccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc---------ccCCCcEEEEecccCCC----
Q 003262 130 GFNA-IEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE---------KLAQVELLVIDEAAAIP---- 195 (835)
Q Consensus 130 gl~~-lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~---------~l~~adLLvIDEAAAIP---- 195 (835)
-+.. .+.... ....+.+.. ++...+. -.......|-+..|.-+. .+...++||||||=.+.
T Consensus 169 ~~~~~~~~~~~-~~~~~~g~~-~~~~~~~---~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f 243 (563)
T 3i5x_A 169 IHDMNYGLKKY-ACVSLVGGT-DFRAAMN---KMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGF 243 (563)
T ss_dssp HHHHCGGGTTS-CEEEECTTS-CHHHHHH---HHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTT
T ss_pred HHhhccccCce-eEEEEECCc-CHHHHHH---HHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccch
Confidence 2211 111100 000011100 0000000 000112235556665442 24678999999998765
Q ss_pred HHHHHHhhc------------CCeEEEEeecc
Q 003262 196 LPVVRSLLG------------PYLVFLSSTVN 215 (835)
Q Consensus 196 lpllk~Ll~------------~y~vflsSTi~ 215 (835)
-+.+..++. ..+++||.|..
T Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~ 275 (563)
T 3i5x_A 244 RDDLETISGILNEKNSKSADNIKTLLFSATLD 275 (563)
T ss_dssp HHHHHHHHHHHHHHCSSCTTCCEEEEEESSCC
T ss_pred HHHHHHHHHhhhhccccCccCceEEEEEccCC
Confidence 455555442 12677898864
No 199
>1yk3_A Hypothetical protein RV1347C/MT1389; acyltransferase, GCN5-related fold, structural genomics, PSI, protein structure initiative; HET: BOG; 2.20A {Mycobacterium tuberculosis} SCOP: d.108.1.1
Probab=96.73 E-value=0.0034 Score=62.28 Aligned_cols=71 Identities=10% Similarity=-0.054 Sum_probs=49.1
Q ss_pred EEeeC-cccccCChHHHHHHHHHHHHhc-ccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccccc
Q 003262 420 RIATH-PSAMRLGYGSTAVELLTRYYEG-QLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRER 497 (835)
Q Consensus 420 RIAvh-Pd~q~mGyGsraL~~L~~~~~g-~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~ 497 (835)
.|.+. |+|||+|||+++++.+.+|... ..
T Consensus 130 ~~~i~~p~~rGkGiG~~ll~~~~~~a~~~~~------------------------------------------------- 160 (210)
T 1yk3_A 130 HAAIADLSKVNRGFGPLLLPRIVASVFANEP------------------------------------------------- 160 (210)
T ss_dssp EEEESCHHHHTTTHHHHHHHHHHHHHHHHCT-------------------------------------------------
T ss_pred EEEEEChhhcCCChHHHHHHHHHHHHHhcCC-------------------------------------------------
Confidence 55554 9999999999999999998642 11
Q ss_pred CCCCcceE-EEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEc
Q 003262 498 QPEKLNYI-GVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLK 546 (835)
Q Consensus 498 ~~~~lDyl-GvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr 546 (835)
+++-| ...+--+...++||+|+||+.+..... .|...++|..
T Consensus 161 ---g~~~I~l~v~~~N~~A~~lyek~GF~~~g~~~~----~~~~~~~~~l 203 (210)
T 1yk3_A 161 ---RCRRIMFDPDHRNTATRRLCEWAGCKFLGEHDT----TNRRMALYAL 203 (210)
T ss_dssp ---TCCEEEECCBTTCHHHHHHHHHHTCEEEEEEEC----SSCEEEEEEE
T ss_pred ---CCCEEEEecCccCHHHHHHHHHcCCEEeEEEeC----CCCeEEEEEe
Confidence 00000 011233788999999999999887654 2556677764
No 200
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=96.72 E-value=0.011 Score=65.52 Aligned_cols=69 Identities=12% Similarity=-0.022 Sum_probs=52.1
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC----CCcEEEecCChHhHHHHHHHHHhhh
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG----YSNIFVTAPSPENLKTLFEFVCKGF 131 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g----~~nI~VTAPs~enl~tlFef~~kgl 131 (835)
..|.-|.+++..++ .+ +-+++.|+.|.|||.+-.+.+...+..+ ..+++|.+|+.+=+...++.+.+-+
T Consensus 4 ~~~~~Q~~~i~~~~----~~---~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 76 (555)
T 3tbk_A 4 KPRNYQLELALPAK----KG---KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYF 76 (555)
T ss_dssp CCCHHHHHHHHHHH----TT---CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHh----CC---CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence 36788999987654 22 3578999999999999888887777653 4579999999887777666655433
No 201
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.72 E-value=0.0067 Score=64.63 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhccC--CCcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcEEEecC
Q 003262 60 DQGKAVITFLDAILDKT--LRSTVALLAARGRGKSAALGLAIAGAI-AAGYSNIFVTAP 115 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~--~r~~v~LTA~RGRGKSAaLGlaiA~ai-~~g~~nI~VTAP 115 (835)
.+.+++....+.+.... ....++|+|+.|.|||.++-..+..+. ..|++-++|++|
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 132 SRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 45555554444443311 146899999999999999876555666 778877889987
No 202
>3r1k_A Enhanced intracellular surviVal protein; GNAT, acetyltransferase, transferase; HET: COA; 1.95A {Mycobacterium tuberculosis} PDB: 3sxo_A 3ryo_A 3uy5_A
Probab=96.72 E-value=0.00039 Score=77.36 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=28.8
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|..|+|||+|||+|+|+++|+.+.+.+.
T Consensus 104 ~~~~I~~v~V~P~~Rg~Gig~~Ll~~~l~~a~ 135 (428)
T 3r1k_A 104 PTAGLSFVAVAPTHRRRGLLRAMCAELHRRIA 135 (428)
T ss_dssp EEEEEEEEEECTTSCSSSHHHHHHHHHHHHHH
T ss_pred ceeEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 34789999999999999999999999988764
No 203
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=96.61 E-value=0.0054 Score=67.70 Aligned_cols=143 Identities=18% Similarity=0.163 Sum_probs=83.1
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-cC------CCcEEEecCChHhHHHHHHHHHh
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA-AG------YSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~-~g------~~nI~VTAPs~enl~tlFef~~k 129 (835)
.|.-|.+|+-.++ .+ +-+++.|+.|.|||.+-.+.+...+. .+ ...++|.+|+.+-+..+++.+.+
T Consensus 79 pt~iQ~~ai~~i~----~g---~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 151 (434)
T 2db3_A 79 PTPIQKCSIPVIS----SG---RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARK 151 (434)
T ss_dssp CCHHHHHHHHHHH----TT---CCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh----cC---CCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHH
Confidence 6889999987553 22 45899999999999988776655443 22 34799999999999888877654
Q ss_pred hhccccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc--------ccCCCcEEEEecccCCC----HH
Q 003262 130 GFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIP----LP 197 (835)
Q Consensus 130 gl~~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~--------~l~~adLLvIDEAAAIP----lp 197 (835)
-....+.. ..++....+ ....... ....-.|-+..|.-+. .+...++||||||=.+. .+
T Consensus 152 ~~~~~~~~----~~~~~gg~~-~~~~~~~----l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~ 222 (434)
T 2db3_A 152 FAFESYLK----IGIVYGGTS-FRHQNEC----ITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSE 222 (434)
T ss_dssp HTTTSSCC----CCEECTTSC-HHHHHHH----HTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHH
T ss_pred HhccCCcE----EEEEECCCC-HHHHHHH----hhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHH
Confidence 32221111 111111000 0000000 0011134444444331 24578999999997543 35
Q ss_pred HHHHhhc-------CCeEEEEeecc
Q 003262 198 VVRSLLG-------PYLVFLSSTVN 215 (835)
Q Consensus 198 llk~Ll~-------~y~vflsSTi~ 215 (835)
.++.++. ...++||.|..
T Consensus 223 ~~~~i~~~~~~~~~~q~l~~SAT~~ 247 (434)
T 2db3_A 223 DMRRIMTHVTMRPEHQTLMFSATFP 247 (434)
T ss_dssp HHHHHHHCTTSCSSCEEEEEESCCC
T ss_pred HHHHHHHhcCCCCCceEEEEeccCC
Confidence 5666653 12577888863
No 204
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=96.59 E-value=0.002 Score=68.31 Aligned_cols=142 Identities=16% Similarity=0.205 Sum_probs=80.5
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
.+.-|.+++..+.+ + +.+++.|+.|.|||.+.-+++...+.. ...+++|.+|+.+-+....+-+.+-+...
T Consensus 44 ~~~~Q~~~i~~i~~----~---~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 116 (394)
T 1fuu_A 44 PSAIQQRAIMPIIE----G---HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM 116 (394)
T ss_dssp CCHHHHHHHHHHHH----T---CCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHhC----C---CCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 68899999876654 2 347899999999998766665554432 23479999999988877776554432222
Q ss_pred cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc--------ccCCCcEEEEecccCC----CHHHHHHh
Q 003262 135 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAI----PLPVVRSL 202 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~--------~l~~adLLvIDEAAAI----Plpllk~L 202 (835)
+..- ....+... ..... ... ....|-+..|+-+. .+...+++|||||=.+ ..+.+..+
T Consensus 117 ~~~~----~~~~g~~~-~~~~~---~~~--~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~ 186 (394)
T 1fuu_A 117 DIKV----HACIGGTS-FVEDA---EGL--RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQI 186 (394)
T ss_dssp CCCE----EEECSSCC-HHHHH---HHH--HHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHH
T ss_pred CeeE----EEEeCCCc-hHHHH---hhc--CCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHH
Confidence 2110 00000000 00000 000 01224444544331 2346899999999765 23445555
Q ss_pred hc-----CCeEEEEeecc
Q 003262 203 LG-----PYLVFLSSTVN 215 (835)
Q Consensus 203 l~-----~y~vflsSTi~ 215 (835)
+. ..+++||.|..
T Consensus 187 ~~~~~~~~~~i~~SAT~~ 204 (394)
T 1fuu_A 187 FTLLPPTTQVVLLSATMP 204 (394)
T ss_dssp HHHSCTTCEEEEECSSCC
T ss_pred HHhCCCCceEEEEEEecC
Confidence 42 23677888864
No 205
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=96.57 E-value=0.0015 Score=76.58 Aligned_cols=137 Identities=18% Similarity=0.157 Sum_probs=85.6
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEY 136 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy 136 (835)
.+.-|.+++..+. + ...+++.|+.|.|||.+.-+++...+..| .+|++++|..+-+...++-+ +.+..+|.
T Consensus 26 l~~~Q~~~i~~i~----~---~~~~lv~apTGsGKT~~~~l~il~~~~~~-~~~l~i~P~r~La~q~~~~~-~~~~~~g~ 96 (702)
T 2p6r_A 26 LFPPQAEAVEKVF----S---GKNLLLAMPTAAGKTLLAEMAMVREAIKG-GKSLYVVPLRALAGEKYESF-KKWEKIGL 96 (702)
T ss_dssp CCCCCHHHHHHHT----T---CSCEEEECSSHHHHHHHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHH-TTTTTTTC
T ss_pred CCHHHHHHHHHHh----C---CCcEEEEcCCccHHHHHHHHHHHHHHHhC-CcEEEEeCcHHHHHHHHHHH-HHHHhcCC
Confidence 5678999887632 2 34689999999999999888887766655 58999999999988888776 33433332
Q ss_pred cccccceeeecCCC--CCCcceeEeeeeeccceeEEeeCCcccc--------ccCCCcEEEEecccCCC----HHHHHHh
Q 003262 137 KEHIDYDIVRSSNP--DLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIP----LPVVRSL 202 (835)
Q Consensus 137 ~e~~dy~i~~st~p--~~~~aivrvni~~~hrq~Iqyi~P~d~~--------~l~~adLLvIDEAAAIP----lpllk~L 202 (835)
+ +...++. ...+. .....|-+..|+-+. .+...+++|||||=.+. -+.+..+
T Consensus 97 ~------v~~~~G~~~~~~~~--------~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~l 162 (702)
T 2p6r_A 97 R------IGISTGDYESRDEH--------LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEIL 162 (702)
T ss_dssp C------EEEECSSCBCCSSC--------STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHH
T ss_pred E------EEEEeCCCCcchhh--------ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHH
Confidence 1 1111110 00000 012345555554321 14567899999998753 2323322
Q ss_pred h------c--CCeEEEEeeccC
Q 003262 203 L------G--PYLVFLSSTVNG 216 (835)
Q Consensus 203 l------~--~y~vflsSTi~G 216 (835)
+ + ..+|+||.|+.-
T Consensus 163 l~~l~~~~~~~~ii~lSATl~n 184 (702)
T 2p6r_A 163 VTKMRRMNKALRVIGLSATAPN 184 (702)
T ss_dssp HHHHHHHCTTCEEEEEECCCTT
T ss_pred HHHHHhcCcCceEEEECCCcCC
Confidence 2 2 347889999864
No 206
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.56 E-value=0.016 Score=72.31 Aligned_cols=151 Identities=15% Similarity=0.125 Sum_probs=87.8
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccc
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 135 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lg 135 (835)
..|.+|.+|+..+++.+..+. ..-+++.|+-|.|||.+.-+++..++..| .+++|.+|+.+-+...++-+.+-|..++
T Consensus 603 ~~t~~Q~~ai~~il~~~~~g~-p~d~ll~~~TGsGKT~val~aa~~~~~~g-~~vlvlvPt~~La~Q~~~~~~~~~~~~~ 680 (1151)
T 2eyq_A 603 ETTPDQAQAINAVLSDMCQPL-AMDRLVCGDVGFGKTEVAMRAAFLAVDNH-KQVAVLVPTTLLAQQHYDNFRDRFANWP 680 (1151)
T ss_dssp CCCHHHHHHHHHHHHHHHSSS-CCEEEEECCCCTTTHHHHHHHHHHHHTTT-CEEEEECSSHHHHHHHHHHHHHHSTTTT
T ss_pred CCCHHHHHHHHHHHHHHhcCC-cCcEEEECCCCCCHHHHHHHHHHHHHHhC-CeEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 459999999998887665443 23679999999999977655554455455 4899999999988888877665544332
Q ss_pred ccccccceeeecC-CCCCCcceeEeeeeeccceeEEeeCCccc---cccCCCcEEEEecccCCCHHHHHHhh---c-CCe
Q 003262 136 YKEHIDYDIVRSS-NPDLRKPIVRINIYRQHRQTIQYMEPHEH---EKLAQVELLVIDEAAAIPLPVVRSLL---G-PYL 207 (835)
Q Consensus 136 y~e~~dy~i~~st-~p~~~~aivrvni~~~hrq~Iqyi~P~d~---~~l~~adLLvIDEAAAIPlpllk~Ll---~-~y~ 207 (835)
..- ..+.+. +..-.+.+. .-.....-.|-+..|+-+ ..+...++||||||=.+.......+. . ..+
T Consensus 681 i~v----~~l~~~~~~~~~~~~~--~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH~~g~~~~~~l~~l~~~~~v 754 (1151)
T 2eyq_A 681 VRI----EMISRFRSAKEQTQIL--AEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDI 754 (1151)
T ss_dssp CCE----EEESTTSCHHHHHHHH--HHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSCHHHHHHHHHHHTTSEE
T ss_pred CeE----EEEeCCCCHHHHHHHH--HHHhcCCCCEEEECHHHHhCCccccccceEEEechHhcChHHHHHHHHhcCCCCE
Confidence 110 001000 000000000 000000011222223222 22456799999999999887644443 2 346
Q ss_pred EEEEeec
Q 003262 208 VFLSSTV 214 (835)
Q Consensus 208 vflsSTi 214 (835)
++||.|.
T Consensus 755 l~lSATp 761 (1151)
T 2eyq_A 755 LTLTATP 761 (1151)
T ss_dssp EEEESSC
T ss_pred EEEcCCC
Confidence 7788885
No 207
>3sxn_A Enhanced intracellular surviVal protein; GNAT fold, acetyltransferase, acetyl COA binding, transferas; HET: COA; 2.03A {Mycobacterium smegmatis}
Probab=96.54 E-value=0.00066 Score=75.27 Aligned_cols=32 Identities=22% Similarity=0.104 Sum_probs=28.7
Q ss_pred cccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 414 SGARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 414 sgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
..+.|..|+|||+|||+|||+++|+.+.+.+.
T Consensus 98 ~~~~I~~v~V~P~~Rg~Gig~~Ll~~~l~~~~ 129 (422)
T 3sxn_A 98 PVAGISFVAVAPTHRRRGVLRAMYTELHDRIA 129 (422)
T ss_dssp EEEEEEEEEECTTTTTSSHHHHHHHHHHHHHH
T ss_pred ccceEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999888764
No 208
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=96.49 E-value=0.002 Score=72.79 Aligned_cols=141 Identities=21% Similarity=0.205 Sum_probs=81.0
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC--CCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG--YSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g--~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
.+.-|.+|+..+. .+ ..+.++|.|+.|.|||.+.-+++...+..+ ..+++|.+|+.+-+...++.+.+-+...
T Consensus 142 p~~~Q~~ai~~i~----~~-~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~ 216 (508)
T 3fho_A 142 XXKIQEKALPLLL----SN-PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYT 216 (508)
T ss_dssp CCCTTSSSHHHHH----CS-SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTS
T ss_pred cHHHHHHHHHHHH----cC-CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCcc
Confidence 4667888876543 32 134688999999999988766666665443 3479999999999888887665543332
Q ss_pred cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc--------ccCCCcEEEEecccCCCH-----HHHHH
Q 003262 135 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIPL-----PVVRS 201 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~--------~l~~adLLvIDEAAAIPl-----pllk~ 201 (835)
+...+..+. ..... . ......|-+..|+-+. .+...+++|||||=.+.- ..+..
T Consensus 217 ~~~~~~~~~---~~~~~--~--------~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~ 283 (508)
T 3fho_A 217 EVKTAFGIK---DSVPK--G--------AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMR 283 (508)
T ss_dssp SCCEEC-----------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHH
T ss_pred CeeEEEEeC---Ccccc--c--------ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHH
Confidence 222111110 00000 0 0001224444444321 245689999999976543 33333
Q ss_pred hh---c--CCeEEEEeecc
Q 003262 202 LL---G--PYLVFLSSTVN 215 (835)
Q Consensus 202 Ll---~--~y~vflsSTi~ 215 (835)
++ . ..+++||.|..
T Consensus 284 i~~~~~~~~~~i~lSAT~~ 302 (508)
T 3fho_A 284 IKHLLPRNTQIVLFSATFS 302 (508)
T ss_dssp HHHHSCTTCEEEEEESCCS
T ss_pred HHHhCCcCCeEEEEeCCCC
Confidence 33 2 22577888864
No 209
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=96.48 E-value=0.018 Score=61.61 Aligned_cols=142 Identities=15% Similarity=0.160 Sum_probs=82.1
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccc
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 135 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lg 135 (835)
..+.-|.+++..+.+ + .++|.++.|-|||.+..+.+...+.....+++|.+|+.+-+....+-+.+-+...+
T Consensus 9 ~l~~~Q~~~i~~~~~----~----~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T----NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGG----S----CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhh----C----CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 457789998865433 2 57899999999999888777766654456899999998877777666554331100
Q ss_pred ccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc--------ccCCCcEEEEecccCCC----HHHHHHhh
Q 003262 136 YKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIP----LPVVRSLL 203 (835)
Q Consensus 136 y~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~--------~l~~adLLvIDEAAAIP----lpllk~Ll 203 (835)
....+..+.... +. +.... ....|-+..|+-+. .+...++||||||=.+. ...+...+
T Consensus 81 ----~~v~~~~g~~~~--~~--~~~~~--~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~ 150 (494)
T 1wp9_A 81 ----EKIVALTGEKSP--EE--RSKAW--ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREY 150 (494)
T ss_dssp ----GGEEEECSCSCH--HH--HHHHH--HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred ----hheEEeeCCcch--hh--hhhhc--cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHH
Confidence 011111111000 00 00000 01124444444321 24568999999998885 22222222
Q ss_pred -----cCCeEEEEeecc
Q 003262 204 -----GPYLVFLSSTVN 215 (835)
Q Consensus 204 -----~~y~vflsSTi~ 215 (835)
.+++++||.|..
T Consensus 151 ~~~~~~~~~l~lTaTp~ 167 (494)
T 1wp9_A 151 KRQAKNPLVIGLTASPG 167 (494)
T ss_dssp HHHCSSCCEEEEESCSC
T ss_pred HhcCCCCeEEEEecCCC
Confidence 356788999986
No 210
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.47 E-value=0.0047 Score=68.47 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC--CcEEEecCChHhHHHHHHHHH
Q 003262 58 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGY--SNIFVTAPSPENLKTLFEFVC 128 (835)
Q Consensus 58 T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~--~nI~VTAPs~enl~tlFef~~ 128 (835)
|.-|.+|+-.++ .+ ..+.+++.|+.|.|||.+--+++...+..+. ..++|.+|+.+-+..+++.+.
T Consensus 116 ~~~Q~~ai~~il----~~-~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~ 183 (479)
T 3fmp_B 116 SKIQENALPLML----AE-PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIE 183 (479)
T ss_dssp CHHHHHHHHHHT----SB-SCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----cC-CCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHH
Confidence 334999886553 22 2357899999999999987777666554432 379999999999888866543
No 211
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=96.46 E-value=0.003 Score=70.66 Aligned_cols=118 Identities=20% Similarity=0.235 Sum_probs=68.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHH-HHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCcce
Q 003262 78 RSTVALLAARGRGKSAALGLAIAG-AIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPI 156 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~-ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~ai 156 (835)
++.+++.|+.|.|||.+..+.+.. ++..| .+++|++|+.+-+..+++-+. |+.. .|........
T Consensus 21 ~~~vlv~a~TGsGKT~~~~l~il~~~~~~~-~~~lvl~Ptr~La~Q~~~~l~-g~~v-------~~~~~~~~~~------ 85 (459)
T 2z83_A 21 RQMTVLDLHPGSGKTRKILPQIIKDAIQQR-LRTAVLAPTRVVAAEMAEALR-GLPV-------RYQTSAVQRE------ 85 (459)
T ss_dssp TCEEEECCCTTSCTTTTHHHHHHHHHHHTT-CCEEEEECSHHHHHHHHHHTT-TSCE-------EECC------------
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEECchHHHHHHHHHHhc-CceE-------eEEecccccC------
Confidence 357899999999999986665544 33344 589999999998888877653 3211 1111000000
Q ss_pred eEeeeeeccceeEEeeCCccc-------cccCCCcEEEEecccCCC------HHHHHHhhc---CCeEEEEeeccC
Q 003262 157 VRINIYRQHRQTIQYMEPHEH-------EKLAQVELLVIDEAAAIP------LPVVRSLLG---PYLVFLSSTVNG 216 (835)
Q Consensus 157 vrvni~~~hrq~Iqyi~P~d~-------~~l~~adLLvIDEAAAIP------lpllk~Ll~---~y~vflsSTi~G 216 (835)
.+....+.++....+ ..+...++||||||=... +.++..+.. ..+++||.|..+
T Consensus 86 ------~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~~ 155 (459)
T 2z83_A 86 ------HQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPG 155 (459)
T ss_dssp --------CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTT
T ss_pred ------CCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCCc
Confidence 011112333322211 124578999999998643 334444442 347889999863
No 212
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.46 E-value=0.0092 Score=65.88 Aligned_cols=131 Identities=17% Similarity=0.157 Sum_probs=79.6
Q ss_pred ccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcc
Q 003262 54 KKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNA 133 (835)
Q Consensus 54 ~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~ 133 (835)
....+..|.+|+..+.+ + ..++|.|+.|.|||.+--+++... + .+++|.+|+.+-+....+-+.+ |
T Consensus 91 ~~~l~~~Q~~ai~~i~~----~---~~~ll~~~TGsGKT~~~l~~i~~~---~-~~~Lvl~P~~~L~~Q~~~~~~~-~-- 156 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV----D---KRGCIVLPTGSGKTHVAMAAINEL---S-TPTLIVVPTLALAEQWKERLGI-F-- 156 (472)
T ss_dssp CCCBCHHHHHHHHHHTT----T---TEEEEECCTTSCHHHHHHHHHHHH---C-SCEEEEESSHHHHHHHHHHGGG-G--
T ss_pred CCCcCHHHHHHHHHHHh----c---CCEEEEeCCCCCHHHHHHHHHHHc---C-CCEEEEECCHHHHHHHHHHHHh-C--
Confidence 34678999999875543 2 248999999999998754444332 4 5799999998877766655443 3
Q ss_pred ccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc----cc-CCCcEEEEecccCCCHHHHHHhh----c
Q 003262 134 IEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE----KL-AQVELLVIDEAAAIPLPVVRSLL----G 204 (835)
Q Consensus 134 lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~----~l-~~adLLvIDEAAAIPlpllk~Ll----~ 204 (835)
|... ..+..+...+ ...|-+..|+-+. .+ ...+++|||||=.++-+-.+.++ .
T Consensus 157 -~~~~---v~~~~g~~~~--------------~~~Ivv~T~~~l~~~~~~~~~~~~liIvDEaH~~~~~~~~~~~~~~~~ 218 (472)
T 2fwr_A 157 -GEEY---VGEFSGRIKE--------------LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIA 218 (472)
T ss_dssp -CGGG---EEEBSSSCBC--------------CCSEEEEEHHHHHHTHHHHTTTCSEEEEETGGGTTSTTTHHHHHTCCC
T ss_pred -CCcc---eEEECCCcCC--------------cCCEEEEEcHHHHHHHHHhcCCCCEEEEECCcCCCChHHHHHHHhcCC
Confidence 2210 1122221111 0112222232221 12 35899999999888765555444 3
Q ss_pred CCeEEEEeeccC
Q 003262 205 PYLVFLSSTVNG 216 (835)
Q Consensus 205 ~y~vflsSTi~G 216 (835)
+++++||.|..-
T Consensus 219 ~~~l~lSATp~~ 230 (472)
T 2fwr_A 219 PFRLGLTATFER 230 (472)
T ss_dssp SEEEEEESCCCC
T ss_pred CeEEEEecCccC
Confidence 567888999874
No 213
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.43 E-value=0.0047 Score=65.51 Aligned_cols=65 Identities=18% Similarity=0.107 Sum_probs=47.1
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCChHhHHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSPENLKTLFEFVC 128 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAPs~enl~tlFef~~ 128 (835)
.+.-|.+|+..+++ + ..+++.|+.|.|||.+.-+++...+.. +..+++|.+|+.+-+....+.+.
T Consensus 31 ~~~~Q~~~i~~~~~----~---~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~ 97 (391)
T 1xti_A 31 PSEVQHECIPQAIL----G---MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYE 97 (391)
T ss_dssp CCHHHHHHHHHHTT----T---CCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc----C---CcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHH
Confidence 68899998865543 2 358899999999997765555444332 23479999999988877766544
No 214
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=96.37 E-value=0.014 Score=60.27 Aligned_cols=62 Identities=26% Similarity=0.346 Sum_probs=45.2
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHh
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~k 129 (835)
.+.-|.+++..+.+ + +.+++.|+.|.|||.+.-+.+ +..+ .+++|.+|+.+-+....+.+.+
T Consensus 17 l~~~Q~~~i~~i~~----~---~~~lv~~~TGsGKT~~~~~~~---~~~~-~~~liv~P~~~L~~q~~~~~~~ 78 (337)
T 2z0m_A 17 FTEVQSKTIPLMLQ----G---KNVVVRAKTGSGKTAAYAIPI---LELG-MKSLVVTPTRELTRQVASHIRD 78 (337)
T ss_dssp CCHHHHHHHHHHHT----T---CCEEEECCTTSSHHHHHHHHH---HHHT-CCEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc----C---CCEEEEcCCCCcHHHHHHHHH---Hhhc-CCEEEEeCCHHHHHHHHHHHHH
Confidence 58899999875542 2 358899999999997654333 2334 5789999999888887766543
No 215
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.31 E-value=0.038 Score=52.88 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=34.0
Q ss_pred HHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCC--cEEEecCChHhHHHHH
Q 003262 64 AVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYS--NIFVTAPSPENLKTLF 124 (835)
Q Consensus 64 Al~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~--nI~VTAPs~enl~tlF 124 (835)
++..+.+.+..+.. ..++|+|++|.|||+++-..+..+...++. -+.+..........+.
T Consensus 25 ~~~~l~~~l~~~~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (226)
T 2chg_A 25 VIQRLKGYVERKNI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR 86 (226)
T ss_dssp HHHHHHHHHHTTCC-CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHH
T ss_pred HHHHHHHHHhCCCC-CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHH
Confidence 34444444444433 359999999999999886554444333332 3445544444444333
No 216
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=96.30 E-value=0.021 Score=66.04 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=83.5
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC----CcEEEecCChHhHHHHHHHHHhhh
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGY----SNIFVTAPSPENLKTLFEFVCKGF 131 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~----~nI~VTAPs~enl~tlFef~~kgl 131 (835)
..+.-|.+++..+++ + +-+++.|+.|.|||.+-.+.+...+..+. .+++|.+|+.+-+....+.+.+-+
T Consensus 13 ~lr~~Q~~~i~~~l~----g---~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~ 85 (696)
T 2ykg_A 13 KPRNYQLELALPAMK----G---KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYF 85 (696)
T ss_dssp CCCHHHHHHHHHHHT----T---CCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHc----C---CCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 468899999876543 2 35789999999999988877776665432 579999999776666555544333
Q ss_pred ccccccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc---------ccCCCcEEEEecccCCCHH-----
Q 003262 132 NAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE---------KLAQVELLVIDEAAAIPLP----- 197 (835)
Q Consensus 132 ~~lgy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~---------~l~~adLLvIDEAAAIPlp----- 197 (835)
...|+.- ..+.+..+ ....... . .....|-|..|+-+. .+...++||||||=.+.-.
T Consensus 86 ~~~~~~v----~~~~g~~~-~~~~~~~---~-~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~ 156 (696)
T 2ykg_A 86 ERHGYRV----TGISGATA-ENVPVEQ---I-VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNM 156 (696)
T ss_dssp TTTTCCE----EEECSSSC-SSSCHHH---H-HHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHH
T ss_pred ccCCceE----EEEeCCcc-ccccHHH---h-ccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHH
Confidence 2222211 11111110 0000000 0 012346666666442 2445799999999886422
Q ss_pred ----HHHHhh------cCCeEEEEeecc
Q 003262 198 ----VVRSLL------GPYLVFLSSTVN 215 (835)
Q Consensus 198 ----llk~Ll------~~y~vflsSTi~ 215 (835)
++...+ .+.++.||.|..
T Consensus 157 i~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 157 IMFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 333322 245777888875
No 217
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=96.28 E-value=0.027 Score=67.13 Aligned_cols=70 Identities=13% Similarity=0.023 Sum_probs=52.8
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC----CCcEEEecCChHhHHHHHHHHHhh
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG----YSNIFVTAPSPENLKTLFEFVCKG 130 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g----~~nI~VTAPs~enl~tlFef~~kg 130 (835)
...|.-|.+++..+++ + +-+++.|+.|.|||.+-.+.+...+..+ ..+++|.+|+.+=+...++.+.+-
T Consensus 247 ~~l~~~Q~~~i~~~l~----~---~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 247 KKARSYQIELAQPAIN----G---KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp -CCCHHHHHHHHHHHT----T---CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh----C---CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 4578899998875532 2 3578999999999999888887777653 457999999998877776655443
Q ss_pred h
Q 003262 131 F 131 (835)
Q Consensus 131 l 131 (835)
+
T Consensus 320 ~ 320 (797)
T 4a2q_A 320 F 320 (797)
T ss_dssp H
T ss_pred c
Confidence 3
No 218
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=96.24 E-value=0.017 Score=71.76 Aligned_cols=66 Identities=20% Similarity=0.131 Sum_probs=49.6
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHh
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~k 129 (835)
..|.-|.+|+-.+++ + +-+++.|+.|.|||. .++.++......-..++|.+|+.+-+..+++.+.+
T Consensus 78 ~pt~iQ~~ai~~il~----g---~dvlv~ApTGSGKTl-~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~ 143 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQ----G---KSFTMVAPTGVGKTT-FGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK 143 (1104)
T ss_dssp CCCHHHHHHHHHHTT----T---CCEEECCSTTCCHHH-HHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHc----C---CCEEEEeCCCCcHHH-HHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHH
Confidence 478999999876543 2 357899999999999 44444333333345799999999999999988765
No 219
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=96.20 E-value=0.009 Score=64.15 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=49.2
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCChHhHHHHHHHHHh
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAPs~enl~tlFef~~k 129 (835)
.|.-|.+|+..+++ + +.+++.|+.|.|||.+.-+++...+.. ...+++|.+|+.+-+....+.+.+
T Consensus 60 ~~~~Q~~ai~~i~~----~---~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 127 (410)
T 2j0s_A 60 PSAIQQRAIKQIIK----G---RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLA 127 (410)
T ss_dssp CCHHHHHHHHHHHT----T---CCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----C---CCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHH
Confidence 58899999876543 2 348999999999998876665554432 345799999999988888766543
No 220
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.14 E-value=0.021 Score=55.95 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 77 LRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 77 ~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
....++|+|++|.|||+++-..+..+...|+.-+++++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 356899999999999998876555555556655666653
No 221
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.14 E-value=0.013 Score=64.89 Aligned_cols=117 Identities=17% Similarity=0.257 Sum_probs=68.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHH-HHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCccee
Q 003262 79 STVALLAARGRGKSAALGLAIA-GAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIV 157 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA-~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aiv 157 (835)
+.+++.|+.|.|||.+--+++. .++..| .+++|.+|+.+-+..+++.+. |+. +.|. ++. ..
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g-~~~lvl~Pt~~La~Q~~~~~~-~~~-------v~~~----~~~-~~---- 64 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKR-LRTVILAPTRVVASEMYEALR-GEP-------IRYM----TPA-VQ---- 64 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHTT-TSC-------EEEC--------------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCC-CCEEEECcHHHHHHHHHHHhC-CCe-------EEEE----ecC-cc----
Confidence 4789999999999998655554 455555 479999999998888776542 221 1110 000 00
Q ss_pred EeeeeeccceeEEeeCCccc-------cccCCCcEEEEecccCCCH------HHHHHhh---cCCeEEEEeeccC
Q 003262 158 RINIYRQHRQTIQYMEPHEH-------EKLAQVELLVIDEAAAIPL------PVVRSLL---GPYLVFLSSTVNG 216 (835)
Q Consensus 158 rvni~~~hrq~Iqyi~P~d~-------~~l~~adLLvIDEAAAIPl------pllk~Ll---~~y~vflsSTi~G 216 (835)
.....+..+.++....+ ..+...+++|||||=.+.. ..++.+. ++.+++||.|...
T Consensus 65 ---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~ 136 (431)
T 2v6i_A 65 ---SERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPG 136 (431)
T ss_dssp -------CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTT
T ss_pred ---ccCCCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCc
Confidence 00111222333332211 1145679999999999863 2333433 2446889999874
No 222
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=96.06 E-value=0.0066 Score=67.59 Aligned_cols=118 Identities=19% Similarity=0.207 Sum_probs=69.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCcceeE
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVR 158 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aivr 158 (835)
+-+++.|+.|.|||.+.-+++...+..+..+++|.+|+.+-+...++.+. ++ +.. |.. . .+
T Consensus 9 ~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~-~~---~v~----~~~----~-~~------ 69 (440)
T 1yks_A 9 MTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH-GL---DVK----FHT----Q-AF------ 69 (440)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-TS---CEE----EES----S-CC------
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHh-cC---CeE----Eec----c-cc------
Confidence 47899999999999986665555443343579999999998888876543 22 111 110 0 00
Q ss_pred eeeeeccceeEEeeCCccc-------cccCCCcEEEEecccCCCH------HHHHHhhc---CCeEEEEeeccC
Q 003262 159 INIYRQHRQTIQYMEPHEH-------EKLAQVELLVIDEAAAIPL------PVVRSLLG---PYLVFLSSTVNG 216 (835)
Q Consensus 159 vni~~~hrq~Iqyi~P~d~-------~~l~~adLLvIDEAAAIPl------pllk~Ll~---~y~vflsSTi~G 216 (835)
.+..++..-+.++.-..+ ..+...+++|||||=.+.. .++..++. +.+++||.|...
T Consensus 70 -~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~ 142 (440)
T 1yks_A 70 -SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPPG 142 (440)
T ss_dssp -CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTT
T ss_pred -eeccCCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhccCCceEEEEeCCCCc
Confidence 001122222222221111 1245789999999999732 34444442 346788999754
No 223
>1ro5_A Autoinducer synthesis protein LASI; alpha-beta-alpha sandwich, phosphopantetheine fold, signalin; 2.30A {Pseudomonas aeruginosa} SCOP: d.108.1.3
Probab=96.05 E-value=0.012 Score=58.81 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=61.8
Q ss_pred ccEEEEEeeCccccc----CChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcc
Q 003262 415 GARIVRIATHPSAMR----LGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPL 490 (835)
Q Consensus 415 gaRIVRIAvhPd~q~----mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppL 490 (835)
-+.|-|+||+|+|++ .|+|..++..+.+|....
T Consensus 99 ~~ei~R~aV~~~~r~~~~~~~v~~~L~~~~~~~a~~~------------------------------------------- 135 (201)
T 1ro5_A 99 IWELSRFAINSGQKGSLGFSDCTLEAMRALARYSLQN------------------------------------------- 135 (201)
T ss_dssp EEEEEEEEECCSTTCCSCSHHHHHHHHHHHHHHHHTT-------------------------------------------
T ss_pred EEEeeeeEECchhhccccchHHHHHHHHHHHHHHHHC-------------------------------------------
Confidence 478999999999988 789999999999887422
Q ss_pred cccccccCCCCcc-eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCCc
Q 003262 491 LVHLRERQPEKLN-YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHS 550 (835)
Q Consensus 491 l~~l~e~~~~~lD-ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~~ 550 (835)
+++ ++++ ++..+.+||+|.||.+..++....+ -|.-.+.|..+++.
T Consensus 136 ----------g~~~~~~~---a~~~~~~fy~r~G~~~~~~G~~~~~-~g~~~~~~~~~~~~ 182 (201)
T 1ro5_A 136 ----------DIQTLVTV---TTVGVEKMMIRAGLDVSRFGPHLKI-GIERAVALRIELNA 182 (201)
T ss_dssp ----------TCCEEEEE---EEHHHHHHHHHTTCEEEESSCCEEE-TTEEEEEEEEECSH
T ss_pred ----------CCCEEEEE---ECHHHHHHHHHcCCCeEECCCCeee-CCeEEEEEEEECCH
Confidence 122 2222 2689999999999998788877654 68888888888874
No 224
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=95.98 E-value=0.0091 Score=69.74 Aligned_cols=120 Identities=17% Similarity=0.217 Sum_probs=70.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCccee
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIV 157 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aiv 157 (835)
.+.+++.|+.|.|||++..+.+...+..+..+++|++|+.+-+..+++-+. |+. .+ |.... +.
T Consensus 186 g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~-~~~-v~------~~~~~-----l~---- 248 (618)
T 2whx_A 186 KRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR-GLP-IR------YQTPA-----VK---- 248 (618)
T ss_dssp TCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-TSC-EE------ECCTT-----SS----
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc-CCc-ee------Eeccc-----ce----
Confidence 357899999999999987665554443333589999999998888876542 221 11 21100 00
Q ss_pred EeeeeeccceeEEeeCCcccc-------ccCCCcEEEEecccCCCHH------HHHHhhc---CCeEEEEeeccCC
Q 003262 158 RINIYRQHRQTIQYMEPHEHE-------KLAQVELLVIDEAAAIPLP------VVRSLLG---PYLVFLSSTVNGY 217 (835)
Q Consensus 158 rvni~~~hrq~Iqyi~P~d~~-------~l~~adLLvIDEAAAIPlp------llk~Ll~---~y~vflsSTi~GY 217 (835)
...+....+.++...-+. .+.+.++||||||=.+... .+...+. ..+++||.|..+.
T Consensus 249 ---~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~ 321 (618)
T 2whx_A 249 ---SDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPGS 321 (618)
T ss_dssp ---CCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSCTTC
T ss_pred ---eccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccEEEEECCCchh
Confidence 001112223333322111 2567899999999998543 2333332 3368889998553
No 225
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=95.92 E-value=0.01 Score=66.23 Aligned_cols=118 Identities=18% Similarity=0.255 Sum_probs=68.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHH-HHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCcce
Q 003262 78 RSTVALLAARGRGKSAALGLAI-AGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPI 156 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlai-A~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~ai 156 (835)
+..++++|+.|.|||.+.-+.+ ..++..| .+++|++|+.+-+..+++.+ +|+. +.|.......+.
T Consensus 19 ~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~-~~~lvl~Ptr~La~Q~~~~l-~g~~-------v~~~~~~~~~~~----- 84 (451)
T 2jlq_A 19 KRLTIMDLHPGAGKTKRILPSIVREALLRR-LRTLILAPTRVVAAEMEEAL-RGLP-------IRYQTPAVKSDH----- 84 (451)
T ss_dssp TCEEEECCCTTSSCCTTHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHT-TTSC-------EEECCTTCSCCC-----
T ss_pred CCeEEEECCCCCCHhhHHHHHHHHHHHhcC-CcEEEECCCHHHHHHHHHHh-cCce-------eeeeeccccccC-----
Confidence 4577999999999999644444 3445545 58999999999888887654 2321 112111000010
Q ss_pred eEeeeeeccceeEEeeCCccc-------cccCCCcEEEEecccCCCHH------HHHHhh---cCCeEEEEeeccC
Q 003262 157 VRINIYRQHRQTIQYMEPHEH-------EKLAQVELLVIDEAAAIPLP------VVRSLL---GPYLVFLSSTVNG 216 (835)
Q Consensus 157 vrvni~~~hrq~Iqyi~P~d~-------~~l~~adLLvIDEAAAIPlp------llk~Ll---~~y~vflsSTi~G 216 (835)
.....|.++.|.-+ ..+.+.+++|||||=-+... ++.... ...+++||.|..+
T Consensus 85 -------~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 153 (451)
T 2jlq_A 85 -------TGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPG 153 (451)
T ss_dssp -------CSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTT
T ss_pred -------CCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHhhcCCCceEEEEccCCCc
Confidence 11223444444322 12567899999999876332 121111 2346889999754
No 226
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.90 E-value=0.055 Score=50.69 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHH
Q 003262 63 KAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAI 99 (835)
Q Consensus 63 kAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlai 99 (835)
+.+..+.+.+..+. ...++|+|++|.|||+++-..+
T Consensus 29 ~~~~~l~~~l~~~~-~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 29 TEIRRAIQILSRRT-KNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp HHHHHHHHHHTSSS-SCEEEEESCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CCceEEECCCCCCHHHHHHHHH
Confidence 34555555554433 4578999999999999875443
No 227
>2ft0_A TDP-fucosamine acetyltransferase; GNAT fold acetyltransferase, structural genomics, montreal-K bacterial structural genomics initiative, BSGI; HET: ACO; 1.66A {Escherichia coli} PDB: 2fs5_A*
Probab=95.87 E-value=0.11 Score=51.97 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=21.9
Q ss_pred EEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 419 VRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 419 VRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.+|.|+| |+|||+++++.+.+++.
T Consensus 174 ~~i~v~~---g~GiG~~Ll~~~~~~a~ 197 (235)
T 2ft0_A 174 ARIGLLA---GRGAGAELMQTALNWAY 197 (235)
T ss_dssp EEEEEEE---CTTCHHHHHHHHHHHHH
T ss_pred eEEEEEc---CCCHHHHHHHHHHHHHH
Confidence 7889999 99999999999998874
No 228
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.86 E-value=0.02 Score=60.68 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhccCCCc--EEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcEEEecCChHhHHHHHHHHHhhh
Q 003262 60 DQGKAVITFLDAILDKTLRS--TVALLAARGRGKSAALGLAIAGAIAA-GYSNIFVTAPSPENLKTLFEFVCKGF 131 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~--~v~LTA~RGRGKSAaLGlaiA~ai~~-g~~nI~VTAPs~enl~tlFef~~kgl 131 (835)
++.+.+..++.....+.... .++|+|++|.|||+++-..+..+... ++.-++|.+....+...++..+...+
T Consensus 24 ~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l 98 (389)
T 1fnn_A 24 QQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSL 98 (389)
T ss_dssp HHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHh
Confidence 44444555555443343344 79999999999999996544433333 44457777665555555665554433
No 229
>1xmt_A Putative acetyltransferase; structural genomics, protein structure initiative, CESG, AT1G77540, center for eukaryotic structural genomics; 1.15A {Arabidopsis thaliana} SCOP: d.108.1.1 PDB: 2q44_A 2evn_A 2il4_A* 2q4y_A*
Probab=95.86 E-value=0.0062 Score=54.99 Aligned_cols=31 Identities=13% Similarity=-0.055 Sum_probs=28.7
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
.+.|.+|+|+|+|||+|+|+++|+.+.++..
T Consensus 36 ~~~i~~i~V~~~~rg~GiG~~Ll~~~~~~a~ 66 (103)
T 1xmt_A 36 VMDLVHTYVPSFKRGLGLASHLCVAAFEHAS 66 (103)
T ss_dssp EEEEEEEECCGGGTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998875
No 230
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.86 E-value=0.015 Score=65.80 Aligned_cols=117 Identities=12% Similarity=0.145 Sum_probs=67.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCccee
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIV 157 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aiv 157 (835)
.+..+|+|..|.|||+++--. +. ..+++|.+|+.++...+-+-+.+. |... .++ ..+.
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~----~~--~~~~lVlTpT~~aa~~l~~kl~~~----~~~~--------~~~----~~V~ 218 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSR----VN--FEEDLILVPGRQAAEMIRRRANAS----GIIV--------ATK----DNVR 218 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHH----CC--TTTCEEEESCHHHHHHHHHHHTTT----SCCC--------CCT----TTEE
T ss_pred ccEEEEEcCCCCCHHHHHHHH----hc--cCCeEEEeCCHHHHHHHHHHhhhc----Cccc--------ccc----ceEE
Confidence 457889999999999988221 11 257899999999998876654321 1100 000 0011
Q ss_pred EeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhh---cCCeEEEEeecc--CCcccCCchh
Q 003262 158 RINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLL---GPYLVFLSSTVN--GYEGTGRSLS 225 (835)
Q Consensus 158 rvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll---~~y~vflsSTi~--GYEGTGR~fs 225 (835)
.+..|- +.+.. .....+|+||||||.++|..++..++ .+-.+++-.-.+ .|=+.+.+|.
T Consensus 219 T~dsfL--------~~~~~-~~~~~~d~liiDE~sm~~~~~l~~l~~~~~~~~vilvGD~~Qlp~v~~~~~~~ 282 (446)
T 3vkw_A 219 TVDSFL--------MNYGK-GARCQFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQIPYINRVTGFP 282 (446)
T ss_dssp EHHHHH--------HTTTS-SCCCCCSEEEEETGGGSCHHHHHHHHHHTTCSEEEEEECTTSCCCCCCSTTCC
T ss_pred EeHHhh--------cCCCC-CCCCcCCEEEEeCcccCCHHHHHHHHHhCCCCEEEEecCcccccCcccCCCcc
Confidence 111000 11110 01124899999999999999987665 344566655542 2444444443
No 231
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=95.81 E-value=0.028 Score=66.47 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=71.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCccee
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIV 157 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aiv 157 (835)
++.+++.|+.|.|||++..+.+. ..| .+++|++|+.+-+..+++.+.+.+..- ......+..
T Consensus 232 ~~~vlv~ApTGSGKT~a~~l~ll---~~g-~~vLVl~PTReLA~Qia~~l~~~~g~~-vg~~vG~~~------------- 293 (666)
T 3o8b_A 232 FQVAHLHAPTGSGKSTKVPAAYA---AQG-YKVLVLNPSVAATLGFGAYMSKAHGID-PNIRTGVRT------------- 293 (666)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHH---HTT-CCEEEEESCHHHHHHHHHHHHHHHSCC-CEEECSSCE-------------
T ss_pred CCeEEEEeCCchhHHHHHHHHHH---HCC-CeEEEEcchHHHHHHHHHHHHHHhCCC-eeEEECcEe-------------
Confidence 35789999999999988766543 344 379999999999999988765543210 000011110
Q ss_pred EeeeeeccceeEEeeCCccc-----cccCCCcEEEEecccCCCHHH---HHHhh---c-C-C--eEEEEeeccC
Q 003262 158 RINIYRQHRQTIQYMEPHEH-----EKLAQVELLVIDEAAAIPLPV---VRSLL---G-P-Y--LVFLSSTVNG 216 (835)
Q Consensus 158 rvni~~~hrq~Iqyi~P~d~-----~~l~~adLLvIDEAAAIPlpl---lk~Ll---~-~-y--~vflsSTi~G 216 (835)
...+..|.|..|.-+ ..+...++||||||=.++... +..++ . . - +++||.|...
T Consensus 294 -----~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~ 362 (666)
T 3o8b_A 294 -----ITTGAPVTYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 362 (666)
T ss_dssp -----ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTT
T ss_pred -----ccCCCCEEEECcHHHHhCCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCc
Confidence 111223444444332 234568999999999998776 22232 2 1 1 4567889776
No 232
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=95.77 E-value=0.015 Score=68.70 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=69.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCccee
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIV 157 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aiv 157 (835)
.+-+++.|+.|.|||.+.-+++...+..+..+++|.+|+.+-+..+++-+. ++ +.. |.... +.
T Consensus 241 g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~-~~---~i~----~~~~~-----l~---- 303 (673)
T 2wv9_A 241 RQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALR-GL---PVR----YLTPA-----VQ---- 303 (673)
T ss_dssp TCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-TS---CCE----ECCC------------
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHh-cC---Cee----eeccc-----cc----
Confidence 457899999999999987666554433333579999999998888776542 22 211 21100 00
Q ss_pred EeeeeeccceeEEeeCCccc-------cccCCCcEEEEecccCCCH------HHHHHhhc---CCeEEEEeecc
Q 003262 158 RINIYRQHRQTIQYMEPHEH-------EKLAQVELLVIDEAAAIPL------PVVRSLLG---PYLVFLSSTVN 215 (835)
Q Consensus 158 rvni~~~hrq~Iqyi~P~d~-------~~l~~adLLvIDEAAAIPl------pllk~Ll~---~y~vflsSTi~ 215 (835)
...+....+.++.-..+ ..+...++||||||=.+.. .+++.++. +.+++||.|..
T Consensus 304 ---~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~ 374 (673)
T 2wv9_A 304 ---REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEAGEAAAIFMTATPP 374 (673)
T ss_dssp ---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHHTTSCEEEEECSSCT
T ss_pred ---ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhccccCCcEEEEcCCCC
Confidence 00111122222221111 1356789999999999843 34455542 34678899985
No 233
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.73 E-value=0.14 Score=49.38 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHH
Q 003262 61 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLA 98 (835)
Q Consensus 61 QakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGla 98 (835)
+.+++..+.+.+..+.....++|+|++|.|||+++-..
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~ 65 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 65 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 33444445555555554468999999999999988544
No 234
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.71 E-value=0.076 Score=52.32 Aligned_cols=38 Identities=13% Similarity=0.077 Sum_probs=25.8
Q ss_pred cEEEEEcCCCCCHHHHH-HHHHHHHHHcCCCcEEEecCChH
Q 003262 79 STVALLAARGRGKSAAL-GLAIAGAIAAGYSNIFVTAPSPE 118 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaL-GlaiA~ai~~g~~nI~VTAPs~e 118 (835)
..+++||+||.|||+++ +++. .+...|+ ++++-.|..+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~-~~~~~g~-~v~~~~~~~d 42 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE-IYKLGKK-KVAVFKPKID 42 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH-HHHHTTC-EEEEEEEC--
T ss_pred EEEEEECCCCCCHHHHHHHHHH-HHHHCCC-eEEEEeeccc
Confidence 47889999999999997 6543 3444565 5655557654
No 235
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=95.63 E-value=0.041 Score=67.09 Aligned_cols=71 Identities=13% Similarity=0.023 Sum_probs=51.0
Q ss_pred ccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC----CCcEEEecCChHhHHHHHHHHHh
Q 003262 54 KKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG----YSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 54 ~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g----~~nI~VTAPs~enl~tlFef~~k 129 (835)
....+..|.+++..+++ + +-++|.|+.|.|||.+..+.+...+..+ ..+++|.+|+.+=+...++.+.+
T Consensus 246 ~~~~r~~Q~~ai~~il~----g---~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN----G---KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp --CCCHHHHHHHHHHHT----T---CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc----C---CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 34578899998876533 2 3478999999999998877776655442 35799999999877777665544
Q ss_pred hh
Q 003262 130 GF 131 (835)
Q Consensus 130 gl 131 (835)
-+
T Consensus 319 ~~ 320 (936)
T 4a2w_A 319 HF 320 (936)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 236
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.61 E-value=0.075 Score=55.24 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhc-cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHH
Q 003262 63 KAVITFLDAILD-KTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFE 125 (835)
Q Consensus 63 kAl~~~~~~i~e-k~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFe 125 (835)
+.+...++.+.. +....+++|+|++|.|||++.-.. +.. .+..-+++..+.......++.
T Consensus 22 ~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i-~~~--~~~~~~~~~~~~~~~~~~l~~ 82 (324)
T 1hqc_A 22 QKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVI-AHE--LGVNLRVTSGPAIEKPGDLAA 82 (324)
T ss_dssp HHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHH-HHH--HTCCEEEECTTTCCSHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHH-HHH--hCCCEEEEeccccCChHHHHH
Confidence 344444444332 222358999999999999976433 222 255556777776655555544
No 237
>3p2h_A AHL synthase; acyl-ACP binding, SAM binding, signaling protein-I MTA complex, signaling protein-inhibitor complex; HET: MTA NOO; 2.00A {Burkholderia glumae} PDB: 3p2f_A*
Probab=95.40 E-value=0.17 Score=51.00 Aligned_cols=80 Identities=11% Similarity=0.103 Sum_probs=55.7
Q ss_pred cccEEEEEeeCccc-cc----CChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCC
Q 003262 414 SGARIVRIATHPSA-MR----LGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLP 488 (835)
Q Consensus 414 sgaRIVRIAvhPd~-q~----mGyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~p 488 (835)
.-+.|-|+||+|+| |+ .+.|..++..+.+|...+
T Consensus 96 ~~~EisR~aV~~~~rR~~~g~~~~~~~L~~~~~~~a~~~----------------------------------------- 134 (201)
T 3p2h_A 96 HVWELSRFAATPEEGADAGSLAWSVRPMLAAAVECAARR----------------------------------------- 134 (201)
T ss_dssp TEEEEEEEEEC----------CTTHHHHHHHHHHHHHHT-----------------------------------------
T ss_pred CEEEEEEEEEcchhcccccccChHHHHHHHHHHHHHHHC-----------------------------------------
Confidence 44899999999999 54 236888998888886422
Q ss_pred cccccccccCCCCcc-eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCCc
Q 003262 489 PLLVHLRERQPEKLN-YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHS 550 (835)
Q Consensus 489 pLl~~l~e~~~~~lD-ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~~ 550 (835)
+++ ++|+ ++..+.+||+|.||.+..++.... .-|+.++-+.-+++.
T Consensus 135 ------------g~~~~~~~---aq~~~~~~y~rlG~~~~~~G~~~~-~~g~~~va~~i~~~~ 181 (201)
T 3p2h_A 135 ------------GARQLIGV---TFCSMERMFRRIGVHAHRAGAPVS-IDGRMVVACWIDIDA 181 (201)
T ss_dssp ------------TCSEEEEE---EEHHHHHHHHHHTCEEEESSCCEE-ETTEEEEEEEEECSH
T ss_pred ------------CCCEEEEE---ECHHHHHHHHHcCCCeEEcCCCEE-ECCcEEEEEEEECCH
Confidence 222 2222 268999999999999999998875 468777777777764
No 238
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.39 E-value=0.019 Score=54.79 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
...+.|+|+.|.|||+++-..+..+...|++.+++++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 46899999999999999987666555557666777665
No 239
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.38 E-value=0.038 Score=57.18 Aligned_cols=59 Identities=25% Similarity=0.326 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcccCCCCccccccCCcHHHHHHHHHHHHHHhcc--------CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 33 ERDLKDLKEQLCDDFPVGPLIKKCSTLDQGKAVITFLDAILDK--------TLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 33 ~~~l~~lk~~l~~~~p~g~Lv~~~~T~DQakAl~~~~~~i~ek--------~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
.+.+.++++.+.+.- + .|..++..+..++... ....++.|+|+.|.|||++.-. +|..+
T Consensus 5 ~~~l~~l~~~l~~~i-~----------G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~-la~~~ 71 (311)
T 4fcw_A 5 REKLLRLEEELHKRV-V----------GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKT-LAATL 71 (311)
T ss_dssp HHHHHTHHHHHHTTC-C----------SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHhhhc-C----------CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHH-HHHHH
Confidence 456777888887642 1 3444544444444432 1134799999999999987754 44444
No 240
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.25 E-value=0.18 Score=53.42 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHHHHhccCCC-cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEe
Q 003262 58 TLDQGKAVITFLDAILDKTLR-STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVT 113 (835)
Q Consensus 58 T~DQakAl~~~~~~i~ek~~r-~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VT 113 (835)
...+.+++..+.+.+..+... +.++|+|++|.|||++.= ++|..+.....-+.+.
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~-~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM-GMAQALGPDTPFTAIA 104 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH-HHHHHHCSSCCEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH-HHHHHhcccCCccccc
Confidence 344445566666766655432 589999999999998653 4444443222334444
No 241
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.19 E-value=0.38 Score=48.24 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
.+.++|+|+.|.|||++.-. +|.. .+..-+.|..+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~-la~~--~~~~~~~~~~~~ 74 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKA-VATE--AQVPFLAMAGAE 74 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHH-HHHH--HTCCEEEEETTT
T ss_pred CceEEEECCCCCCHHHHHHH-HHHH--hCCCEEEechHH
Confidence 45799999999999987643 2332 355556666654
No 242
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=95.19 E-value=0.01 Score=68.76 Aligned_cols=62 Identities=11% Similarity=0.036 Sum_probs=47.5
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC-C----CcEEEecCChHhHHHH
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-Y----SNIFVTAPSPENLKTL 123 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g-~----~nI~VTAPs~enl~tl 123 (835)
...+..|.+++..+++ + +-++|.|+.|.|||.+..+.+...+..+ . .+++|.+|+.+=+...
T Consensus 6 ~~l~~~Q~~~i~~il~----g---~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~ 72 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE----G---KNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQL 72 (699)
T ss_dssp -CCCHHHHHHHHHHHS----S---CCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHH
T ss_pred CCccHHHHHHHHHHHh----C---CCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHH
Confidence 4578899999876644 2 3478999999999999888887766543 1 5799999998766666
No 243
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.94 E-value=0.069 Score=54.82 Aligned_cols=120 Identities=13% Similarity=0.016 Sum_probs=68.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCccee
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIV 157 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aiv 157 (835)
...+++||+-|.|||+++=-.+..+...|. ++++..|..++- .+ .+-+..+|..- .+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~-kVli~~~~~d~r---~~--~~i~srlG~~~---------------~~-- 68 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADV-KYLVFKPKIDTR---SI--RNIQSRTGTSL---------------PS-- 68 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC-CEEEEEECCCGG---GC--SSCCCCCCCSS---------------CC--
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCC-EEEEEEeccCch---HH--HHHHHhcCCCc---------------cc--
Confidence 357899999999999966433444555564 566666655431 10 00111122110 00
Q ss_pred EeeeeeccceeEEeeCCcccc-------ccCCCcEEEEecccCCCHHHHHHhh---cC-CeEEEEeeccCCcccCCchhH
Q 003262 158 RINIYRQHRQTIQYMEPHEHE-------KLAQVELLVIDEAAAIPLPVVRSLL---GP-YLVFLSSTVNGYEGTGRSLSL 226 (835)
Q Consensus 158 rvni~~~hrq~Iqyi~P~d~~-------~l~~adLLvIDEAAAIPlpllk~Ll---~~-y~vflsSTi~GYEGTGR~fsL 226 (835)
+.....+++. .-+.+|+||||||=-++..++..+. .. -.||++.-.+.|-|..-+-+.
T Consensus 69 -----------~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~ 137 (223)
T 2b8t_A 69 -----------VEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKGEPFGPIA 137 (223)
T ss_dssp -----------EEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHH
T ss_pred -----------cccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccCCcCCCcH
Confidence 0111122221 1135899999999999877654443 22 357888888888665556666
Q ss_pred HHHHH
Q 003262 227 KLLHQ 231 (835)
Q Consensus 227 Kl~~~ 231 (835)
.|+..
T Consensus 138 ~Ll~l 142 (223)
T 2b8t_A 138 KLFTY 142 (223)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66663
No 244
>1kzf_A Acyl-homoserinelactone synthase ESAI; alpha-beta, autoinducer synthase, quorum sensing, bacterial pathogenesis, ligase; 1.80A {Pantoea stewartii subsp} SCOP: d.108.1.3 PDB: 1k4j_A
Probab=94.81 E-value=0.072 Score=54.78 Aligned_cols=95 Identities=6% Similarity=0.120 Sum_probs=67.8
Q ss_pred CCCchhHHHHHhhccCCCCCCcccEEEEEeeCcccccCC-------hHHHHHHHHHHHHhcccccccccccccccCCcch
Q 003262 393 SGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLG-------YGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEV 465 (835)
Q Consensus 393 ~GdLIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mG-------yGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~ 465 (835)
.|+..|..+ .+...+.-. +.|-|+||+|+ ++.| +|..++..+.+|....
T Consensus 98 l~~~f~~~~----~~~~~p~~~-~Ei~R~aV~~~-r~~g~~~~~~~v~~~L~~al~~~a~~~------------------ 153 (230)
T 1kzf_A 98 ITHTFQHCF----SDVTLPAYG-TESSRFFVDKA-RARALLGEHYPISQVLFLAMVNWAQNN------------------ 153 (230)
T ss_dssp CCCCTHHHH----TTSCCCSSC-EEEEEEEECHH-HHHHHHCTTCCHHHHHHHHHHHHHHHT------------------
T ss_pred hcCcChhhc----CCccCCCCC-eEEEEEEEccc-cccccccchhHHHHHHHHHHHHHHHHC------------------
Confidence 456666553 233344445 99999999999 8886 8999999999886422
Q ss_pred hhhhHHhhhhcccccccCCCCCCcccccccccCCCCcc-eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEE
Q 003262 466 RVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQPEKLN-YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMV 544 (835)
Q Consensus 466 ~v~~~~~~~~l~~e~i~~r~~~ppLl~~l~e~~~~~lD-ylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IM 544 (835)
+++ ++|+ +...+.+||+|.||.+..++....+ -|+..+.+
T Consensus 154 -----------------------------------G~~~l~~~---aq~~~~~fy~r~G~~~~~~G~~~~~-~g~~~~a~ 194 (230)
T 1kzf_A 154 -----------------------------------AYGNIYTI---VSRAMLKILTRSGWQIKVIKEAFLT-EKERIYLL 194 (230)
T ss_dssp -----------------------------------TCSEEEEE---EEHHHHHHHHHHCCCCEEEEEEESS-SSCEEEEE
T ss_pred -----------------------------------CCCEEEEE---eCHHHHHHHHHcCCCeEECCCCeeE-CCeEEEEE
Confidence 122 2222 3688999999999998888887654 67777777
Q ss_pred EccCCc
Q 003262 545 LKPLHS 550 (835)
Q Consensus 545 lr~L~~ 550 (835)
.-+++.
T Consensus 195 ~~~~~~ 200 (230)
T 1kzf_A 195 TLPAGQ 200 (230)
T ss_dssp EEECSH
T ss_pred EEECCH
Confidence 777764
No 245
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.72 E-value=0.18 Score=52.99 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
..+++|+|++|.|||+++-..+..+...|..-++|++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 35899999999999998865555554446655677654
No 246
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.45 E-value=0.062 Score=60.36 Aligned_cols=107 Identities=18% Similarity=0.168 Sum_probs=56.6
Q ss_pred HHHHHH---HHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC--ChHhHHHHHHHHHhhhccc
Q 003262 60 DQGKAV---ITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP--SPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 60 DQakAl---~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP--s~enl~tlFef~~kgl~~l 134 (835)
.|.+++ ..+...+..++. ..++|+|++|.|||++.-. +|... +..-+.+.+. ....+..+|+.+....
T Consensus 30 Gq~~~~~~~~~L~~~i~~~~~-~~vLL~GppGtGKTtlAr~-ia~~~--~~~f~~l~a~~~~~~~ir~~~~~a~~~~--- 102 (447)
T 3pvs_A 30 GQQHLLAAGKPLPRAIEAGHL-HSMILWGPPGTGKTTLAEV-IARYA--NADVERISAVTSGVKEIREAIERARQNR--- 102 (447)
T ss_dssp SCHHHHSTTSHHHHHHHHTCC-CEEEEECSTTSSHHHHHHH-HHHHT--TCEEEEEETTTCCHHHHHHHHHHHHHHH---
T ss_pred CcHHHHhchHHHHHHHHcCCC-cEEEEECCCCCcHHHHHHH-HHHHh--CCCeEEEEeccCCHHHHHHHHHHHHHhh---
Confidence 345544 445555666554 5799999999999997643 33322 3323334332 2334444444332110
Q ss_pred cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhh-----cCCeEE
Q 003262 135 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLL-----GPYLVF 209 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll-----~~y~vf 209 (835)
..+...+|+|||+-.++......|+ +...+|
T Consensus 103 --------------------------------------------~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI 138 (447)
T 3pvs_A 103 --------------------------------------------NAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFI 138 (447)
T ss_dssp --------------------------------------------HTTCCEEEEEETTTCC------CCHHHHHTTSCEEE
T ss_pred --------------------------------------------hcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEE
Confidence 0123468999999998876655555 233556
Q ss_pred EEeeccCC
Q 003262 210 LSSTVNGY 217 (835)
Q Consensus 210 lsSTi~GY 217 (835)
.+||.|-+
T Consensus 139 ~att~n~~ 146 (447)
T 3pvs_A 139 GATTENPS 146 (447)
T ss_dssp EEESSCGG
T ss_pred ecCCCCcc
Confidence 67776654
No 247
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=94.34 E-value=0.035 Score=68.65 Aligned_cols=84 Identities=23% Similarity=0.137 Sum_probs=56.9
Q ss_pred HHHHHHHhcccCCCCccccccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEec
Q 003262 35 DLKDLKEQLCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTA 114 (835)
Q Consensus 35 ~l~~lk~~l~~~~p~g~Lv~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTA 114 (835)
.+.++.+.+...... . . .-|.+++-.+++ + +-+++.|+.|.|||+ ..+.+...+.....+++|.+
T Consensus 42 ~~~~~~~~~~~~~g~----~--p-~iQ~~ai~~il~----g---~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~ 106 (1054)
T 1gku_B 42 LLKEFVEFFRKCVGE----P--R-AIQKMWAKRILR----K---ESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIF 106 (1054)
T ss_dssp HHHHHHHHHHTTTCS----C--C-HHHHHHHHHHHT----T---CCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEE
T ss_pred chHHHHHHHHHhcCC----C--H-HHHHHHHHHHHh----C---CCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEe
Confidence 344555555543322 1 3 789998876543 2 458899999999997 66666555544446899999
Q ss_pred CChHhHHHHHHHHHhhhcc
Q 003262 115 PSPENLKTLFEFVCKGFNA 133 (835)
Q Consensus 115 Ps~enl~tlFef~~kgl~~ 133 (835)
|+.+-+..+++.+.+-+..
T Consensus 107 PtreLa~Q~~~~l~~l~~~ 125 (1054)
T 1gku_B 107 PTSLLVIQAAETIRKYAEK 125 (1054)
T ss_dssp SCHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHhh
Confidence 9999988888776654433
No 248
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=94.31 E-value=0.083 Score=43.01 Aligned_cols=51 Identities=16% Similarity=0.041 Sum_probs=44.5
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
..|++.|+.++....+++.|+.+||+.+|++.+.+-..+.++.+++-.++.
T Consensus 14 ~~L~~~~r~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~ 64 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAE 64 (70)
T ss_dssp TSSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC---
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhh
Confidence 468999999999999999999999999999999999999999988877664
No 249
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.25 E-value=0.34 Score=50.84 Aligned_cols=63 Identities=13% Similarity=0.060 Sum_probs=36.4
Q ss_pred ccccCCcHHHHHHHHHHHHHHhc-cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCh
Q 003262 52 LIKKCSTLDQGKAVITFLDAILD-KTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP 117 (835)
Q Consensus 52 Lv~~~~T~DQakAl~~~~~~i~e-k~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~ 117 (835)
+-...-..+..+.+..+++.... +....+++|+|++|.|||++.-.. |. ..+..-+.+..+..
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i-a~--~~~~~~~~~~~~~~ 91 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANII-SY--EMSANIKTTAAPMI 91 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHH-HH--HTTCCEEEEEGGGC
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHH-HH--HhCCCeEEecchhc
Confidence 33344444555556666655432 222357999999999999976432 22 23544466665543
No 250
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.23 E-value=0.25 Score=52.09 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 61 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 61 QakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
|.+++..+.+++..+.....++|+|++|.|||+++-. +|..+
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~-la~~l 62 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARL-LAKGL 62 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHH-HHHHH
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHH-HHHHh
Confidence 5555566666666666556789999999999998853 44444
No 251
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.22 E-value=0.14 Score=47.87 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=17.2
Q ss_pred cEEEEecccCCCHHHHHHhh
Q 003262 184 ELLVIDEAAAIPLPVVRSLL 203 (835)
Q Consensus 184 dLLvIDEAAAIPlpllk~Ll 203 (835)
.+|+|||...+|......|+
T Consensus 78 g~l~ldei~~l~~~~q~~Ll 97 (145)
T 3n70_A 78 GTLVLSHPEHLTREQQYHLV 97 (145)
T ss_dssp SCEEEECGGGSCHHHHHHHH
T ss_pred cEEEEcChHHCCHHHHHHHH
Confidence 57999999999998777666
No 252
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=94.20 E-value=0.12 Score=59.97 Aligned_cols=140 Identities=14% Similarity=0.157 Sum_probs=77.6
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEY 136 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy 136 (835)
.+.-|.+++..+++ + +-+++.|+.|.|||.+--+.+ +. . ...++|.+|..+=++...+.+.+ +|.
T Consensus 45 ~rp~Q~~~i~~il~----g---~d~lv~~pTGsGKTl~~~lpa--l~-~-~g~~lVisP~~~L~~q~~~~l~~----~gi 109 (591)
T 2v1x_A 45 FRPLQLETINVTMA----G---KEVFLVMPTGGGKSLCYQLPA--LC-S-DGFTLVICPLISLMEDQLMVLKQ----LGI 109 (591)
T ss_dssp CCTTHHHHHHHHHT----T---CCEEEECCTTSCTTHHHHHHH--HT-S-SSEEEEECSCHHHHHHHHHHHHH----HTC
T ss_pred CCHHHHHHHHHHHc----C---CCEEEEECCCChHHHHHHHHH--HH-c-CCcEEEEeCHHHHHHHHHHHHHh----cCC
Confidence 46789998876543 2 348899999999997643322 22 2 24799999998877766554432 232
Q ss_pred cccccceeeecCCCCC-CcceeEeeeeeccceeEEeeCCcccc-------------ccCCCcEEEEecccCCCH------
Q 003262 137 KEHIDYDIVRSSNPDL-RKPIVRINIYRQHRQTIQYMEPHEHE-------------KLAQVELLVIDEAAAIPL------ 196 (835)
Q Consensus 137 ~e~~dy~i~~st~p~~-~~aivrvni~~~hrq~Iqyi~P~d~~-------------~l~~adLLvIDEAAAIPl------ 196 (835)
.- ..+.+..+.. ...+.+-.......-.|-|..|+-+. .+...+++|||||=.+.-
T Consensus 110 ~~----~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr 185 (591)
T 2v1x_A 110 SA----TMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFR 185 (591)
T ss_dssp CE----EECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCC
T ss_pred cE----EEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccH
Confidence 11 1111111100 00000000001223457788886431 134789999999987652
Q ss_pred ------HHHHHhh-cCCeEEEEeecc
Q 003262 197 ------PVVRSLL-GPYLVFLSSTVN 215 (835)
Q Consensus 197 ------pllk~Ll-~~y~vflsSTi~ 215 (835)
..++... +..+++||.|..
T Consensus 186 ~~~~~l~~l~~~~~~~~ii~lSAT~~ 211 (591)
T 2v1x_A 186 PDYKALGILKRQFPNASLIGLTATAT 211 (591)
T ss_dssp GGGGGGGHHHHHCTTSEEEEEESSCC
T ss_pred HHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 2344443 334677888873
No 253
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=94.15 E-value=0.13 Score=44.93 Aligned_cols=51 Identities=18% Similarity=0.088 Sum_probs=47.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
.|++.|+.||....+++.|..+||+.+|++.+.|-..+.+++++|-.++..
T Consensus 37 ~L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~ 87 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQE 87 (92)
T ss_dssp TSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999999999999999999999999888753
No 254
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.09 E-value=0.24 Score=56.17 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENL 120 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl 120 (835)
.+.++|+|++|.|||++.-.. |.. .|+.-|.|.+++..+.
T Consensus 77 ~~~lLL~GppGtGKTtla~~l-a~~--l~~~~i~in~s~~~~~ 116 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLV-AQE--LGYDILEQNASDVRSK 116 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHH-HHH--TTCEEEEECTTSCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHH-HHH--cCCCEEEEeCCCcchH
Confidence 368999999999999977433 332 3766677887765543
No 255
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.08 E-value=0.33 Score=49.65 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=16.7
Q ss_pred CCcEEEEEcCCCCCHHHHHH
Q 003262 77 LRSTVALLAARGRGKSAALG 96 (835)
Q Consensus 77 ~r~~v~LTA~RGRGKSAaLG 96 (835)
....+.|+|++|.|||++.-
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 34679999999999998763
No 256
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.82 E-value=0.79 Score=47.25 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=17.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLA 98 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGla 98 (835)
..+++|+|++|.|||++.-..
T Consensus 67 ~~~vll~G~~GtGKT~la~~l 87 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKM 87 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 447999999999999877543
No 257
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.78 E-value=0.6 Score=47.18 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=16.8
Q ss_pred CcEEEEEcCCCCCHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGL 97 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGl 97 (835)
.+.++|+|+.|.|||+++-.
T Consensus 45 ~~~vll~G~~GtGKT~la~~ 64 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKA 64 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 45799999999999987753
No 258
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=93.71 E-value=0.074 Score=60.53 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=66.9
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccc
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEY 136 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy 136 (835)
.+..|.+++..+++ + +-+++.|+.|.|||.+--+. .+. .+ ..++|.+|..+-++..++.+. .+|.
T Consensus 26 ~r~~Q~~~i~~il~----g---~d~lv~apTGsGKTl~~~lp--~l~-~~-g~~lvi~P~~aL~~q~~~~l~----~~gi 90 (523)
T 1oyw_A 26 FRPGQEEIIDTVLS----G---RDCLVVMPTGGGKSLCYQIP--ALL-LN-GLTVVVSPLISLMKDQVDQLQ----ANGV 90 (523)
T ss_dssp CCTTHHHHHHHHHT----T---CCEEEECSCHHHHHHHHHHH--HHH-SS-SEEEEECSCHHHHHHHHHHHH----HTTC
T ss_pred CCHHHHHHHHHHHc----C---CCEEEECCCCcHHHHHHHHH--HHH-hC-CCEEEECChHHHHHHHHHHHH----HcCC
Confidence 37789998876543 2 35788999999999754332 222 22 468999999888776665543 2222
Q ss_pred cccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCcccc--------ccCCCcEEEEecccCCC
Q 003262 137 KEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIP 195 (835)
Q Consensus 137 ~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~--------~l~~adLLvIDEAAAIP 195 (835)
. ...+.++...- .......-.+...-.|-|+.|+-+. .....+++|||||=.+.
T Consensus 91 ~----~~~l~~~~~~~-~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~ 152 (523)
T 1oyw_A 91 A----AACLNSTQTRE-QQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCIS 152 (523)
T ss_dssp C----EEEECTTSCHH-HHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGC
T ss_pred c----EEEEeCCCCHH-HHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccC
Confidence 1 11122211100 0000000001222357788887552 12467899999998874
No 259
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.63 E-value=0.36 Score=49.74 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHH
Q 003262 61 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAI 99 (835)
Q Consensus 61 QakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlai 99 (835)
|.+++..+...+..++.. .++|+|++|.|||++.-..+
T Consensus 30 ~~~~~~~l~~~l~~~~~~-~~ll~G~~G~GKT~la~~l~ 67 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMP-HLLFAGPPGVGKTTAALALA 67 (327)
T ss_dssp CHHHHHHHHHHHHHTCCC-EEEEESCTTSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCC-eEEEECcCCCCHHHHHHHHH
Confidence 445555555666665443 59999999999999775433
No 260
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=93.59 E-value=0.19 Score=61.57 Aligned_cols=59 Identities=15% Similarity=0.221 Sum_probs=45.3
Q ss_pred ccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC-CcEEEecCCh
Q 003262 54 KKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGY-SNIFVTAPSP 117 (835)
Q Consensus 54 ~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~-~nI~VTAPs~ 117 (835)
.......|.+++..++. .. ..-++|.++-|-|||-..+.++..++..|. .+++|.+|+.
T Consensus 151 ~~~LrpyQ~eav~~~l~---~~--~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~s 210 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGR---RH--APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPET 210 (968)
T ss_dssp SSCCCHHHHHHHHHHHH---SS--SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTT
T ss_pred CCCCcHHHHHHHHHHHH---hc--CCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHH
Confidence 35678899999876554 22 345678889999999998888877777764 5799999993
No 261
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.57 E-value=0.81 Score=49.24 Aligned_cols=77 Identities=12% Similarity=0.061 Sum_probs=40.1
Q ss_pred HHHHHHhcccCCCCccccccCCcHHHHHHHHHHHHHHh--------ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Q 003262 36 LKDLKEQLCDDFPVGPLIKKCSTLDQGKAVITFLDAIL--------DKTLRSTVALLAARGRGKSAALGLAIAGAIAAGY 107 (835)
Q Consensus 36 l~~lk~~l~~~~p~g~Lv~~~~T~DQakAl~~~~~~i~--------ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~ 107 (835)
++.+...+-+..|-..+-.+.--.++.+.|...+..-. -....+.++|+|++|.|||++.-.. |. ..+.
T Consensus 67 ~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ai-a~--~~~~ 143 (357)
T 3d8b_A 67 IELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCI-AS--QSGA 143 (357)
T ss_dssp HHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHH-HH--HTTC
T ss_pred HHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHH-HH--HcCC
Confidence 33444555544443334344333444444544443210 1223468999999999999876432 22 2344
Q ss_pred CcEEEecC
Q 003262 108 SNIFVTAP 115 (835)
Q Consensus 108 ~nI~VTAP 115 (835)
.-+.|.++
T Consensus 144 ~~~~i~~~ 151 (357)
T 3d8b_A 144 TFFSISAS 151 (357)
T ss_dssp EEEEEEGG
T ss_pred eEEEEehH
Confidence 44555554
No 262
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.56 E-value=0.43 Score=48.75 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 77 LRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 77 ~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
....++|+|+.|.|||++.- ++|.. .|..-+.|.+|+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~-~ia~~--~~~~~~~i~~~~ 99 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAA-KIAEE--SNFPFIKICSPD 99 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHH-HHHHH--HTCSEEEEECGG
T ss_pred CCeEEEEECCCCCcHHHHHH-HHHHH--hCCCEEEEeCHH
Confidence 34589999999999998763 23332 355556666653
No 263
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.53 E-value=0.27 Score=51.47 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 62 GKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 62 akAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
.+++..+.+.+..+.....+.++|++|.|||++.=. +|.. .+..-+.+.+.+
T Consensus 32 ~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~-la~~--l~~~~~~i~~~~ 83 (324)
T 3u61_B 32 AFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKA-LCHD--VNADMMFVNGSD 83 (324)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHH-HHHH--TTEEEEEEETTT
T ss_pred HHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHH-HHHH--hCCCEEEEcccc
Confidence 344445555566666666778888899999997632 3332 244345566543
No 264
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.34 E-value=1.7 Score=44.65 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=16.5
Q ss_pred CcEEEEEcCCCCCHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALG 96 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLG 96 (835)
...+.|+|++|.|||++.-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4589999999999999764
No 265
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.33 E-value=0.2 Score=51.37 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
...++|+|+.|.|||++.-. +|..+ +..-+.|.+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~-la~~l--~~~~~~i~~~ 84 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARR-LAKLA--NAPFIKVEAT 84 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHH-HHHHH--TCCEEEEEGG
T ss_pred CceEEEECCCCCCHHHHHHH-HHHHh--CCCEEEEcch
Confidence 45799999999999987753 34333 4444555443
No 266
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.33 E-value=0.62 Score=50.22 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
+.++|+|+.|.|||++.- ++|..+ +..-+.|.++
T Consensus 85 ~~iLL~GppGtGKT~la~-ala~~~--~~~~~~v~~~ 118 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK-AVATEA--NSTFFSVSSS 118 (355)
T ss_dssp CCEEEECSTTSCHHHHHH-HHHHHH--TCEEEEEEHH
T ss_pred ceEEEECCCCCcHHHHHH-HHHHHh--CCCEEEeeHH
Confidence 469999999999998764 233322 4433555443
No 267
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=93.33 E-value=0.13 Score=60.74 Aligned_cols=67 Identities=15% Similarity=0.040 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHHHH-----HHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHH
Q 003262 57 STLDQGKAVITFLD-----AILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVC 128 (835)
Q Consensus 57 ~T~DQakAl~~~~~-----~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~ 128 (835)
.|.||.+++..+-. .....-.++.+++.|+.|.|||+ .++..+...+ +.++++|..+-+..+++.+.
T Consensus 129 e~~d~l~~i~dl~~p~~~~p~ar~l~rk~vlv~apTGSGKT~---~al~~l~~~~--~gl~l~PtR~LA~Qi~~~l~ 200 (677)
T 3rc3_A 129 DCKDDLRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTY---HAIQKYFSAK--SGVYCGPLKLLAHEIFEKSN 200 (677)
T ss_dssp GCHHHHHHHTBCCCGGGGCHHHHTSCCEEEEEECCTTSSHHH---HHHHHHHHSS--SEEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhccChhhhCHHHHhcCCCEEEEEcCCCCCHHH---HHHHHHHhcC--CeEEEeCHHHHHHHHHHHHH
Confidence 38888888643211 00011124689999999999998 4455554443 34777999999999987754
No 268
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.29 E-value=0.68 Score=49.30 Aligned_cols=44 Identities=9% Similarity=0.008 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 59 LDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 59 ~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
+.|..++..+..++..++....+.++|++|.||+++.-. +|..+
T Consensus 5 pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~-la~~l 48 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYL 48 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHH
T ss_pred CchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH-HHHHH
Confidence 567778888888888888777899999999999987654 34433
No 269
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.20 E-value=0.56 Score=49.90 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
.+.+.|+|++|.|||++.-. +|... .+..-+.|.++
T Consensus 45 ~~~iLL~GppGtGKT~la~a-la~~~-~~~~~~~i~~~ 80 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKA-VATEA-NNSTFFSISSS 80 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHH-HHHHT-TSCEEEEEECC
T ss_pred CceEEEECCCCccHHHHHHH-HHHHc-CCCcEEEEEhH
Confidence 35799999999999986542 22221 13333556655
No 270
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=92.83 E-value=0.24 Score=41.33 Aligned_cols=47 Identities=21% Similarity=0.154 Sum_probs=42.7
Q ss_pred CCccHHHHHHHHHHHh----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGM----LGQDISCIQEQMKLEADRIFVLFRKVMTKLT 708 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gL----Q~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~ 708 (835)
..|++.|+.|+..... ++.|+.+||+.+|++.+.+-..+.++++++-
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4689999999988887 9999999999999999999999999998886
No 271
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=92.76 E-value=0.18 Score=65.50 Aligned_cols=69 Identities=16% Similarity=0.120 Sum_probs=54.2
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCcEEEecCChHhHHHHHHHHHhhh
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-YSNIFVTAPSPENLKTLFEFVCKGF 131 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g-~~nI~VTAPs~enl~tlFef~~kgl 131 (835)
-+.-|.+++..+.+ . +.-+++.|+.|.|||.+--+++..++..+ -.++++++|..+-+...++-..+-|
T Consensus 927 fnpiQ~q~~~~l~~----~--~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f 996 (1724)
T 4f92_B 927 FNPIQTQVFNTVYN----S--DDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKF 996 (1724)
T ss_dssp CCHHHHHHHHHHHS----C--CSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc----C--CCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHh
Confidence 57789998865543 2 24689999999999999999998877653 4689999999999988886655444
No 272
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=92.73 E-value=0.24 Score=45.77 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=46.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
.|++.|+.|+. ..+++.|..+||+.+|++.+.|-..+.++.++|-+++..
T Consensus 109 ~L~~~~r~v~~-~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~ 158 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKE 158 (164)
T ss_dssp HSCHHHHHHHH-HHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999 899999999999999999999999999999999888764
No 273
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.66 E-value=0.16 Score=52.13 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHH
Q 003262 61 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIA 100 (835)
Q Consensus 61 QakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA 100 (835)
|.+++..+.+.+..++.. .++|+|++|.|||++.-..+.
T Consensus 22 ~~~~~~~l~~~l~~~~~~-~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIP-HLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp CHHHHHHHHTTTTTTCCC-CEEEESSSSSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCC-eEEEECcCCcCHHHHHHHHHH
Confidence 344444454545455443 499999999999987754433
No 274
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.56 E-value=0.78 Score=51.11 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=16.1
Q ss_pred CcEEEEEcCCCCCHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALG 96 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLG 96 (835)
.+.++|+|++|.|||++.-
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999998653
No 275
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.54 E-value=0.59 Score=48.19 Aligned_cols=122 Identities=19% Similarity=0.120 Sum_probs=70.4
Q ss_pred cEEEEEcCCCCCHHH-HHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCccee
Q 003262 79 STVALLAARGRGKSA-ALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIV 157 (835)
Q Consensus 79 ~~v~LTA~RGRGKSA-aLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aiv 157 (835)
...++||+.|.|||+ +|+.+ -.+...| .+++|-.|..++--.. ..+. ..+|..
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~-~r~~~~g-~kvli~kp~~D~R~~~-~~I~---Sr~G~~-------------------- 82 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRL-RRGIYAK-QKVVVFKPAIDDRYHK-EKVV---SHNGNA-------------------- 82 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHHHHTT-CCEEEEEEC---------------CBTTBC--------------------
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHHcC-CceEEEEeccCCcchh-hhHH---HhcCCc--------------------
Confidence 578999999999999 66775 3344445 4678888866542100 0000 011110
Q ss_pred EeeeeeccceeEEeeCCccccc--cCCCcEEEEecccCCCHHHHHHhh---cCC-eEEEEeeccCCcccCCchhHHHHHH
Q 003262 158 RINIYRQHRQTIQYMEPHEHEK--LAQVELLVIDEAAAIPLPVVRSLL---GPY-LVFLSSTVNGYEGTGRSLSLKLLHQ 231 (835)
Q Consensus 158 rvni~~~hrq~Iqyi~P~d~~~--l~~adLLvIDEAAAIPlpllk~Ll---~~y-~vflsSTi~GYEGTGR~fsLKl~~~ 231 (835)
...+.+-.++++.. ....|+++||||==++-.++..+. ... .|+.+.--.=|-|-.-+-+.+|+..
T Consensus 83 --------~~a~~v~~~~di~~~i~~~~dvV~IDEaQFf~~~~v~~l~~la~~gi~Vi~~GLd~DF~~~~F~~~~~Ll~~ 154 (219)
T 3e2i_A 83 --------IEAINISKASEIMTHDLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDFRGEPFEPMPKLMAV 154 (219)
T ss_dssp --------CEEEEESSGGGGGGSCCTTCSEEEECCGGGSCTHHHHHHHHHHHTTCEEEEEEESBCTTSCBCTTHHHHHHH
T ss_pred --------eeeEEeCCHHHHHHHHhcCCCEEEEechhcCCHHHHHHHHHHHHCCCEEEEeecccccccCCCccHHHHHHh
Confidence 11122223334322 246899999999999976666654 223 4655555455888888888888876
Q ss_pred hhh
Q 003262 232 LEQ 234 (835)
Q Consensus 232 L~~ 234 (835)
-..
T Consensus 155 Ad~ 157 (219)
T 3e2i_A 155 SEQ 157 (219)
T ss_dssp CSE
T ss_pred cce
Confidence 543
No 276
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.52 E-value=0.57 Score=49.51 Aligned_cols=34 Identities=29% Similarity=0.293 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEec
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTA 114 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTA 114 (835)
.+.++|+|+.|.|||++.= ++|.. .+..-+.|++
T Consensus 51 ~~~vLl~GppGtGKT~la~-aia~~--~~~~~~~v~~ 84 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK-AVATE--ANSTFFSVSS 84 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH-HHHHH--HTCEEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHH--HCCCEEEEch
Confidence 3469999999999998653 33332 2433344544
No 277
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.42 E-value=0.52 Score=47.70 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=31.9
Q ss_pred CCCcEEEEecc------cCCCHHHHHHhhc-CC----eEEEEeeccCCcccCCchhHHHHHHh
Q 003262 181 AQVELLVIDEA------AAIPLPVVRSLLG-PY----LVFLSSTVNGYEGTGRSLSLKLLHQL 232 (835)
Q Consensus 181 ~~adLLvIDEA------AAIPlpllk~Ll~-~y----~vflsSTi~GYEGTGR~fsLKl~~~L 232 (835)
+.+||||+||. --||.+-|-.++. .| +|+ |||.-.=.|+..-
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIl----------TGr~ap~~l~e~A 171 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVII----------TGRGCHRDILDLA 171 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEE----------ECSSCCHHHHHHC
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEE----------ECCCCcHHHHHhC
Confidence 67999999999 4599998888883 33 566 8998865555544
No 278
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=92.39 E-value=0.32 Score=53.93 Aligned_cols=62 Identities=18% Similarity=-0.005 Sum_probs=41.8
Q ss_pred cccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCcEEEecCCh
Q 003262 53 IKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-YSNIFVTAPSP 117 (835)
Q Consensus 53 v~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g-~~nI~VTAPs~ 117 (835)
++.....-|.+++..+......+ .-++|.++-|-|||.....+++.+...+ ..+++|.+|..
T Consensus 34 ~~~~L~~~Q~~~v~~l~~~~~~~---~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~ 96 (500)
T 1z63_A 34 IKANLRPYQIKGFSWMRFMNKLG---FGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS 96 (500)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTT---CCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST
T ss_pred hhccchHHHHHHHHHHHHHhhCC---CCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH
Confidence 34567889999986555433322 2456788999999988655555555544 35788888954
No 279
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=92.37 E-value=0.26 Score=56.57 Aligned_cols=66 Identities=21% Similarity=0.173 Sum_probs=53.8
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CC--CcEEEecCChHhHHHHHHHHHhh
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA-GY--SNIFVTAPSPENLKTLFEFVCKG 130 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~-g~--~nI~VTAPs~enl~tlFef~~kg 130 (835)
..|.+|.+||. +...+++|.|+.|.|||++|=--++.++.. |. .+|++++++..++..+-+-+.+-
T Consensus 9 ~Ln~~Q~~av~---------~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 9 SLNDKQREAVA---------APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TCCHHHHHHHT---------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHh---------CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 36889999884 124588999999999999998888888876 43 58999999999999888776543
No 280
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=92.16 E-value=0.2 Score=41.27 Aligned_cols=48 Identities=21% Similarity=0.145 Sum_probs=41.8
Q ss_pred CccHHHHHHHHHHH----hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIG----MLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDY 710 (835)
Q Consensus 663 ~Ls~~q~~iLla~g----LQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~ 710 (835)
.|++.|+.|+.... .++.|+.+||+.+|++.+.+-..+.++++++-..
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 58899988888776 6999999999999999999999999888877543
No 281
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.11 E-value=1.7 Score=47.16 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=15.8
Q ss_pred CcEEEEEcCCCCCHHHHH
Q 003262 78 RSTVALLAARGRGKSAAL 95 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaL 95 (835)
.+.++|+|+.|.|||++.
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999865
No 282
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.06 E-value=0.34 Score=50.19 Aligned_cols=44 Identities=27% Similarity=0.175 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCCCHHHH-HHHHHHHHHHcCCCcEEEecCChHhHH
Q 003262 77 LRSTVALLAARGRGKSAA-LGLAIAGAIAAGYSNIFVTAPSPENLK 121 (835)
Q Consensus 77 ~r~~v~LTA~RGRGKSAa-LGlaiA~ai~~g~~nI~VTAPs~enl~ 121 (835)
.+-.+++.+..|.|||++ +.+|. .+...|+.-+++..-...+..
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~-~l~~~G~~V~v~d~D~q~~~~ 49 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAH-AQLRQGVRVMAGVVETHGRAE 49 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHH-HHHHTTCCEEEEECCCTTCHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHH-HHHHCCCCEEEEEeCCCCChh
Confidence 344689999999999998 55554 344678865555554333333
No 283
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.95 E-value=0.28 Score=53.76 Aligned_cols=40 Identities=25% Similarity=0.256 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCh
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP 117 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~ 117 (835)
.+.+.|+|+.|.|||+++=..++.+...|..-+||++...
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 4588999999999999876555555556655578887653
No 284
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.77 E-value=0.67 Score=47.04 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=18.0
Q ss_pred CCcEEEEecccCCCHHHHHHhh
Q 003262 182 QVELLVIDEAAAIPLPVVRSLL 203 (835)
Q Consensus 182 ~adLLvIDEAAAIPlpllk~Ll 203 (835)
...+|+|||+-.+|......|+
T Consensus 100 ~~~~l~lDEi~~l~~~~q~~Ll 121 (265)
T 2bjv_A 100 DGGTLFLDELATAPMMVQEKLL 121 (265)
T ss_dssp TTSEEEEESGGGSCHHHHHHHH
T ss_pred CCcEEEEechHhcCHHHHHHHH
Confidence 3479999999999988766655
No 285
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.77 E-value=0.33 Score=54.63 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
.+.++++|..|.||||+++..+..+...|++-.+|++..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 457899999999999999887777767787656777664
No 286
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.76 E-value=1.4 Score=40.97 Aligned_cols=48 Identities=17% Similarity=0.089 Sum_probs=28.4
Q ss_pred cEEEEecccCCCHHHHHHhhc------C--CeEEEEeeccCCcccCCchhHHHHHHh
Q 003262 184 ELLVIDEAAAIPLPVVRSLLG------P--YLVFLSSTVNGYEGTGRSLSLKLLHQL 232 (835)
Q Consensus 184 dLLvIDEAAAIPlpllk~Ll~------~--y~vflsSTi~GYEGTGR~fsLKl~~~L 232 (835)
.+|+|||.-.+|......|+. + ..++++|+ ...+....||.=.|..+|
T Consensus 77 ~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn-~~~~~~~~~~~~~L~~rl 132 (143)
T 3co5_A 77 GVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS-YAAGSDGISCEEKLAGLF 132 (143)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE-ECTTTC--CHHHHHHHHS
T ss_pred CeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC-CCHHHHHhCccHHHHHHh
Confidence 579999999999988777662 1 24554444 343333223654454444
No 287
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=91.63 E-value=2.3 Score=48.33 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
.+.++|+|+.|.|||++.-. +|.. .+..-+.|+.+
T Consensus 49 p~gvLL~GppGtGKT~Lara-ia~~--~~~~f~~is~~ 83 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARA-VAGE--ANVPFFHISGS 83 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHH-HHHH--HTCCEEEEEGG
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHH--cCCCeeeCCHH
Confidence 45799999999999987643 3332 24433445443
No 288
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.21 E-value=0.38 Score=50.93 Aligned_cols=70 Identities=9% Similarity=0.100 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--------CCCcEEEecCChH-hHHHHHHHHH
Q 003262 59 LDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--------GYSNIFVTAPSPE-NLKTLFEFVC 128 (835)
Q Consensus 59 ~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~--------g~~nI~VTAPs~e-nl~tlFef~~ 128 (835)
.++.+.+..++.....+...+.++|+|++|.|||+++-..+..+... ++.-|+|.+.... +...++.-+.
T Consensus 26 ~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~ 104 (384)
T 2qby_B 26 EDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLA 104 (384)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHH
Confidence 34444555555554444445689999999999999986554444333 5555677655433 3334444333
No 289
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.17 E-value=0.82 Score=46.94 Aligned_cols=40 Identities=10% Similarity=0.142 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHH
Q 003262 61 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAG 101 (835)
Q Consensus 61 QakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ 101 (835)
|.+++..+...+..++... ++|+|++|.|||++.-..+..
T Consensus 26 ~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 26 NKETIDRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp CTHHHHHHHHHHHSCCCCC-EEEECSTTSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCe-EEEECcCCCCHHHHHHHHHHH
Confidence 4444555556666665544 999999999999977544433
No 290
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.15 E-value=0.84 Score=50.83 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAPs 116 (835)
..++.|+|+.|.|||+++-.....+... |..-++|+++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 4589999999999999886444334333 44446676653
No 291
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=91.15 E-value=0.45 Score=41.19 Aligned_cols=49 Identities=22% Similarity=0.119 Sum_probs=43.1
Q ss_pred CccHHHHHHHHHHHh----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGM----LGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 663 ~Ls~~q~~iLla~gL----Q~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~ 711 (835)
.|++.|+.|+..... ++.|+.+||+.+|++.+-|-..+.++++++-..+
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 588999999988887 9999999999999999999999999998886543
No 292
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.08 E-value=0.54 Score=49.26 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEec
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTA 114 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTA 114 (835)
.+.+.|+|+.|.|||++.- ++|.. .+..-|.|..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~-ala~~--~~~~~i~v~~ 82 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAK-AIANE--CQANFISIKG 82 (301)
T ss_dssp CSEEEEECSSSSSHHHHHH-HHHHH--TTCEEEEECH
T ss_pred CceEEEECCCCcCHHHHHH-HHHHH--hCCCEEEEEh
Confidence 4579999999999998764 23332 2443455544
No 293
>1bob_A HAT1, histone acetyltransferase; histone modification, acetyl coenzyme A binding-protein; HET: ACO; 2.30A {Saccharomyces cerevisiae} SCOP: d.108.1.1
Probab=90.97 E-value=0.15 Score=55.23 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=27.4
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 445 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~ 445 (835)
-.||.-+.|+|+|||+|+|+++++.+.+.+.
T Consensus 214 R~rIsq~lVlPpyQgkGiG~~Ll~~i~~~~~ 244 (320)
T 1bob_A 214 RAKISQFLIFPPYQNKGHGSCLYEAIIQSWL 244 (320)
T ss_dssp EEEEEEEEECGGGCSSSHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEcHHHhCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999999995554
No 294
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.90 E-value=2.4 Score=43.48 Aligned_cols=120 Identities=14% Similarity=0.110 Sum_probs=61.5
Q ss_pred CcEEEEEcCCCCCHH-HHHHHHHHHHHHcCCCcEEEecCChHhH---HHHHHHHHhhhccccccccccceeeecCCCCCC
Q 003262 78 RSTVALLAARGRGKS-AALGLAIAGAIAAGYSNIFVTAPSPENL---KTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLR 153 (835)
Q Consensus 78 r~~v~LTA~RGRGKS-AaLGlaiA~ai~~g~~nI~VTAPs~enl---~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~ 153 (835)
....++||+-|.||| +|||++.-+ ...|. +++|--|...+- ..+..++ |..- +
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~-~~~g~-kVli~k~~~d~R~ge~~i~s~~-------g~~~----~---------- 84 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRT-QFAKQ-HAIVFKPCIDNRYSEEDVVSHN-------GLKV----K---------- 84 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH-HHTTC-CEEEEECC------------------------C----C----------
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH-HHCCC-EEEEEEeccCCcchHHHHHhhc-------CCee----E----------
Confidence 347789999999999 556665433 44564 666666877642 1122221 1110 0
Q ss_pred cceeEeeeeeccceeEEeeCCccccc-c-CCCcEEEEecccCCCHHHHHHhh---cCC-eEEEEeeccCCcccCCchhHH
Q 003262 154 KPIVRINIYRQHRQTIQYMEPHEHEK-L-AQVELLVIDEAAAIPLPVVRSLL---GPY-LVFLSSTVNGYEGTGRSLSLK 227 (835)
Q Consensus 154 ~aivrvni~~~hrq~Iqyi~P~d~~~-l-~~adLLvIDEAAAIPlpllk~Ll---~~y-~vflsSTi~GYEGTGR~fsLK 227 (835)
+ +..-.++++.. . ..+|+|+||||=-++..+|..+- ..- .|+++.=-.=|.|---+=+.+
T Consensus 85 -a-------------~~~~~~~~~~~~~~~~~dvViIDEaQF~~~~~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~ 150 (214)
T 2j9r_A 85 -A-------------VPVSASKDIFKHITEEMDVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQ 150 (214)
T ss_dssp -E-------------EECSSGGGGGGGCCSSCCEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHH
T ss_pred -E-------------eecCCHHHHHHHHhcCCCEEEEECcccCCHHHHHHHHHHhhCCCEEEEEecccccccCccccHHH
Confidence 0 00001112221 1 25899999999999866664443 222 354433333355555577778
Q ss_pred HHHHhhh
Q 003262 228 LLHQLEQ 234 (835)
Q Consensus 228 l~~~L~~ 234 (835)
|+..-..
T Consensus 151 Ll~~AD~ 157 (214)
T 2j9r_A 151 LMAIAEH 157 (214)
T ss_dssp HHHHCSE
T ss_pred HHHhccc
Confidence 8865443
No 295
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.74 E-value=0.64 Score=55.98 Aligned_cols=41 Identities=22% Similarity=0.363 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 61 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 61 QakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
|.+.+..+++.+..++ ...++|+|++|.|||+++-.. |..+
T Consensus 175 r~~~i~~l~~~l~~~~-~~~vlL~G~pG~GKT~la~~l-a~~l 215 (854)
T 1qvr_A 175 RDEEIRRVIQILLRRT-KNNPVLIGEPGVGKTAIVEGL-AQRI 215 (854)
T ss_dssp CHHHHHHHHHHHHCSS-CCCCEEEECTTSCHHHHHHHH-HHHH
T ss_pred cHHHHHHHHHHHhcCC-CCceEEEcCCCCCHHHHHHHH-HHHH
Confidence 3355666667665544 346899999999999977543 4444
No 296
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.70 E-value=2.6 Score=41.99 Aligned_cols=121 Identities=18% Similarity=0.143 Sum_probs=61.1
Q ss_pred cEEEEEcCCCCCHHHHH-HHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCccee
Q 003262 79 STVALLAARGRGKSAAL-GLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIV 157 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaL-GlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aiv 157 (835)
...++||+-|.|||++| +++ -.+...|+ +++|-.|...+- + |...+ ..|.... +.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a-~r~~~~g~-kV~v~k~~~d~r-----~---~~~~i--~s~~g~~------------~~ 64 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRI-RRAKIAKQ-KIQVFKPEIDNR-----Y---SKEDV--VSHMGEK------------EQ 64 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHH-HHHHHTTC-CEEEEEEC---------------CEE--ECTTSCE------------EE
T ss_pred EEEEEECCCCCcHHHHHHHHH-HHHHHCCC-EEEEEEeccCcc-----c---hHHHH--HhhcCCc------------ee
Confidence 58899999999999555 443 34445665 566655765431 0 10000 0111000 00
Q ss_pred EeeeeeccceeEEeeCCccccc-c-CCCcEEEEecccCCCHHHHHHh---hcCC-eEEEEeeccCCcccCCchhHHHHHH
Q 003262 158 RINIYRQHRQTIQYMEPHEHEK-L-AQVELLVIDEAAAIPLPVVRSL---LGPY-LVFLSSTVNGYEGTGRSLSLKLLHQ 231 (835)
Q Consensus 158 rvni~~~hrq~Iqyi~P~d~~~-l-~~adLLvIDEAAAIPlpllk~L---l~~y-~vflsSTi~GYEGTGR~fsLKl~~~ 231 (835)
.+.+-.++++.. + ..+|+|+||||--++..++..+ ...- .|+++.--.=|.|-.-+=+.+|+..
T Consensus 65 ----------a~~~~~~~~i~~~~~~~~dvViIDEaqfl~~~~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~ 134 (191)
T 1xx6_A 65 ----------AVAIKNSREILKYFEEDTEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAI 134 (191)
T ss_dssp ----------CEEESSSTHHHHHCCTTCSEEEECSGGGSCTHHHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHH
T ss_pred ----------eEeeCCHHHHHHHHhccCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHH
Confidence 011111223322 2 3589999999988865555443 3222 4555433333555555666777765
Q ss_pred hh
Q 003262 232 LE 233 (835)
Q Consensus 232 L~ 233 (835)
-.
T Consensus 135 AD 136 (191)
T 1xx6_A 135 AE 136 (191)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 297
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=90.69 E-value=0.46 Score=45.58 Aligned_cols=53 Identities=8% Similarity=0.002 Sum_probs=47.4
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEIS 715 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~~ 715 (835)
.|++.|+.++...-+++.|..+||+.+|++.+.|-..+.++.+++-+.+..+.
T Consensus 140 ~L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~~ 192 (194)
T 1or7_A 140 SLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLI 192 (194)
T ss_dssp HSCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHCC--
T ss_pred hCCHHHHHHhHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999988886543
No 298
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.56 E-value=0.27 Score=51.77 Aligned_cols=55 Identities=22% Similarity=0.198 Sum_probs=37.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc------CCCcEEEecCChHhHHHHHHHHHhhh
Q 003262 77 LRSTVALLAARGRGKSAALGLAIAGAIAA------GYSNIFVTAPSPENLKTLFEFVCKGF 131 (835)
Q Consensus 77 ~r~~v~LTA~RGRGKSAaLGlaiA~ai~~------g~~nI~VTAPs~enl~tlFef~~kgl 131 (835)
..+.++|+|++|.|||+++-..+..+... ++.-++|.++...+...++..+...+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l 103 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAV 103 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHh
Confidence 34589999999999999987655444332 44457788877666666655554433
No 299
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=90.48 E-value=0.6 Score=60.77 Aligned_cols=74 Identities=18% Similarity=0.134 Sum_probs=56.3
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC----------CCcEEEecCChHhHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG----------YSNIFVTAPSPENLKTLFEF 126 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g----------~~nI~VTAPs~enl~tlFef 126 (835)
.+.-|.+++-++++ . ..-++++|+.|.|||.+--+++...+... -.+++.+||..+=++..++-
T Consensus 80 ln~iQs~~~~~al~----~--~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~ 153 (1724)
T 4f92_B 80 LNRIQSKLYRAALE----T--DENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGS 153 (1724)
T ss_dssp CCHHHHHTHHHHHT----C--CCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc----C--CCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHH
Confidence 35679888765433 2 23589999999999999989888877531 23699999999999888887
Q ss_pred HHhhhccccc
Q 003262 127 VCKGFNAIEY 136 (835)
Q Consensus 127 ~~kgl~~lgy 136 (835)
..+-|..+|+
T Consensus 154 l~~~~~~~gi 163 (1724)
T 4f92_B 154 FGKRLATYGI 163 (1724)
T ss_dssp HHHHHTTTTC
T ss_pred HHHHHhhCCC
Confidence 7777776664
No 300
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=90.04 E-value=0.77 Score=42.07 Aligned_cols=51 Identities=16% Similarity=0.179 Sum_probs=46.8
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
.|++.|+.++....+++.|..+||+.+|++.+-+-..+.++.+++-.++..
T Consensus 25 ~L~~~~r~vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~ 75 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKK 75 (113)
T ss_dssp GSCHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999998887754
No 301
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.97 E-value=0.24 Score=51.99 Aligned_cols=52 Identities=8% Similarity=0.237 Sum_probs=34.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCCcEEEecCChHhHHHHHHHH
Q 003262 76 TLRSTVALLAARGRGKSAALGLAIAGAIAA---GYSNIFVTAPSPENLKTLFEFV 127 (835)
Q Consensus 76 ~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~---g~~nI~VTAPs~enl~tlFef~ 127 (835)
.....++|+|++|.|||+++-..+..+-.. ++.-|+|.++.......++..+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 334589999999999999987654444333 5555777765544444455444
No 302
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.96 E-value=0.59 Score=45.42 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
...++|+|+.|.|||+++-..++ ..|..-++++...
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 35899999999999998765544 5566667887653
No 303
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=89.89 E-value=0.63 Score=41.03 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=40.4
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLT 708 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~ 708 (835)
..|+..|..||..+ +++.|..+||+.+|++.+-|-..+.++.+|+-
T Consensus 26 ~~Lt~~e~~vl~l~-~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 26 SGLTDQERTLLGLL-SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp -CCCHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 46899999998887 99999999999999999999888888887764
No 304
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=89.84 E-value=0.75 Score=41.54 Aligned_cols=50 Identities=20% Similarity=0.105 Sum_probs=43.6
Q ss_pred CccHHHHHHHHHHHh----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGM----LGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 663 ~Ls~~q~~iLla~gL----Q~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
.|++.|+.|+..... +++|+.+||+.+|++.+-|-....++++++-..++
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~ 72 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 72 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 578888877776664 89999999999999999999999999999987765
No 305
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=89.69 E-value=0.47 Score=50.61 Aligned_cols=69 Identities=16% Similarity=0.279 Sum_probs=40.6
Q ss_pred HHHHHHHHH-HHHhcc--CCCcEEEE--EcCCCCCHHHHHHHHHHHHHHc------CCCcEEEecCChHhHHHHHHHHHh
Q 003262 61 QGKAVITFL-DAILDK--TLRSTVAL--LAARGRGKSAALGLAIAGAIAA------GYSNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 61 QakAl~~~~-~~i~ek--~~r~~v~L--TA~RGRGKSAaLGlaiA~ai~~------g~~nI~VTAPs~enl~tlFef~~k 129 (835)
+.+.+..++ .....+ .....++| +|++|.|||+++-..+..+-.. ++.-++|.+....+...++..+..
T Consensus 30 el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (412)
T 1w5s_A 30 EAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVR 109 (412)
T ss_dssp HHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHH
Confidence 334444444 443333 33457888 9999999999997665544332 444577776444444555544443
No 306
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.68 E-value=0.21 Score=50.64 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=16.0
Q ss_pred CcEEEEEcCCCCCHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALG 96 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLG 96 (835)
.+.++|+|+.|.|||++.-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4468999999999999764
No 307
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=89.62 E-value=0.89 Score=41.80 Aligned_cols=51 Identities=10% Similarity=0.105 Sum_probs=46.9
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 713 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~ 713 (835)
.|++.|+.++....+++.|..+||+.+|++.+-+-..+.++.+++-.++..
T Consensus 22 ~L~~~~r~vl~l~y~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~ 72 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMK 72 (113)
T ss_dssp GSCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999998887754
No 308
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=89.61 E-value=0.7 Score=45.49 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=47.1
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 712 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~ 712 (835)
..|++.|+.||....+++.|..+||+.+|++.+.|-..+.+++++|-+++.
T Consensus 186 ~~L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~ 236 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKALERLREMLS 236 (239)
T ss_dssp TTSCHHHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999999999999887764
No 309
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=89.40 E-value=0.76 Score=49.88 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
.+.+.|.|+.|.|||+++=..++.+...|..-+||++..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 458999999999999986555555656676678888764
No 310
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=89.33 E-value=0.71 Score=53.78 Aligned_cols=66 Identities=23% Similarity=0.219 Sum_probs=53.9
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-C--CCcEEEecCChHhHHHHHHHHHhhh
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA-G--YSNIFVTAPSPENLKTLFEFVCKGF 131 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~-g--~~nI~VTAPs~enl~tlFef~~kgl 131 (835)
.|.+|.+||.. ...++.|.|+.|.|||++|---++.++.. | ..+|++++.+..+...+-+-+.+-+
T Consensus 3 L~~~Q~~av~~---------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 3 LNPGQQQAVEF---------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCHHHHHHHHC---------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHhC---------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 57889998752 24588999999999999998888888875 5 3589999999999998887776543
No 311
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=89.14 E-value=0.86 Score=37.25 Aligned_cols=46 Identities=13% Similarity=0.142 Sum_probs=40.1
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLT 708 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~ 708 (835)
..|++.|..+|..+ .++.|..+||+++|++.+-+-..+.++.+++-
T Consensus 10 ~~L~~~e~~il~~~-~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFELL-VQDKTTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHHH-TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHH-HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 56999999998885 99999999999999999988888887777664
No 312
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=88.72 E-value=0.74 Score=57.82 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=57.0
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC-----CcEEEecCChHhHHHHHHHHHh
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGY-----SNIFVTAPSPENLKTLFEFVCK 129 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~-----~nI~VTAPs~enl~tlFef~~k 129 (835)
...|.+|.+||.. ....++++|+-|.|||++|=--++.++..|. .+|+|.+++..+...+.+-+..
T Consensus 9 ~~~t~eQ~~~i~~---------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 9 STWTDDQWNAIVS---------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp -CCCHHHHHHHHC---------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC---------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 3479999998742 1457899999999999999888888887754 5899999999999999998877
Q ss_pred hhcc
Q 003262 130 GFNA 133 (835)
Q Consensus 130 gl~~ 133 (835)
.+..
T Consensus 80 ~l~~ 83 (1232)
T 3u4q_A 80 ALEK 83 (1232)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 313
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=88.51 E-value=0.79 Score=56.82 Aligned_cols=70 Identities=14% Similarity=-0.004 Sum_probs=52.4
Q ss_pred cCCcHHHHHHHHHHHHHHhccC-------CCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCChHhHHHHHH
Q 003262 55 KCSTLDQGKAVITFLDAILDKT-------LRSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSPENLKTLFE 125 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~-------~r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAPs~enl~tlFe 125 (835)
...+.-|.+|+..+++.+..+. .++-.++.++.|.|||.+. +.++..+.. +..+|+|-+|+.+=+..+.+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 4578899999999998876431 1245789999999999996 666665542 23589999998886666544
No 314
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=88.35 E-value=1.7 Score=45.81 Aligned_cols=21 Identities=29% Similarity=0.238 Sum_probs=17.8
Q ss_pred CcEEEEecccCCCHHHHHHhh
Q 003262 183 VELLVIDEAAAIPLPVVRSLL 203 (835)
Q Consensus 183 adLLvIDEAAAIPlpllk~Ll 203 (835)
..+|+|||+-.+|..+...|+
T Consensus 97 ~g~L~LDEi~~l~~~~q~~Ll 117 (304)
T 1ojl_A 97 GGTLFLDEIGDISPLMQVRLL 117 (304)
T ss_dssp TSEEEEESCTTCCHHHHHHHH
T ss_pred CCEEEEeccccCCHHHHHHHH
Confidence 358999999999998877666
No 315
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=88.14 E-value=0.81 Score=39.26 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=40.4
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLT 708 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~ 708 (835)
..|++.|..||..+ +++.+..+||+.+|++.+-|-..++++.+|+-
T Consensus 20 ~~Lt~~e~~vl~l~-~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 20 NQLTPRERDILKLI-AQGLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGSCHHHHHHHHHH-TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 46899999888885 99999999999999999999888888887764
No 316
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.06 E-value=0.59 Score=48.89 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHH
Q 003262 62 GKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIA 100 (835)
Q Consensus 62 akAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA 100 (835)
.+++..+...+..+... .++|+|++|.|||+++-..+.
T Consensus 43 ~~~~~~l~~~l~~~~~~-~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 43 DHAVTVLKKTLKSANLP-HMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CTTHHHHHHHTTCTTCC-CEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCC-EEEEECCCCCCHHHHHHHHHH
Confidence 33444555556555443 489999999999998754433
No 317
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=87.83 E-value=0.82 Score=38.04 Aligned_cols=45 Identities=24% Similarity=0.249 Sum_probs=39.2
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLT 708 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~ 708 (835)
.|++.|..++..+ +++.+..+||+.+|++.+.+-..+.++.+|+-
T Consensus 16 ~L~~~e~~vl~l~-~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSAV-VAGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHHH-TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 3788888888875 99999999999999999999888888887764
No 318
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=87.70 E-value=6.3 Score=44.47 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
...++++|..|.||||+++-.+..+...|++-++|++..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 357899999999999999876666666687656666653
No 319
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=87.66 E-value=1.1 Score=50.91 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=15.7
Q ss_pred CcEEEEEcCCCCCHHHHH
Q 003262 78 RSTVALLAARGRGKSAAL 95 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaL 95 (835)
.+.+.|+|+.|.|||++.
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 457999999999999865
No 320
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=87.60 E-value=1.2 Score=52.65 Aligned_cols=65 Identities=25% Similarity=0.204 Sum_probs=53.7
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CC--CcEEEecCChHhHHHHHHHHHhh
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA-GY--SNIFVTAPSPENLKTLFEFVCKG 130 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~-g~--~nI~VTAPs~enl~tlFef~~kg 130 (835)
.|.+|.+||.. ...+++|.|+-|.|||++|=--+|.++.. |. .+|++.+.+..++..+-+-+.+-
T Consensus 12 Ln~~Q~~av~~---------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 12 LNKEQQEAVRT---------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp SCHHHHHHHHC---------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC---------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 68899998752 23588999999999999999889999974 53 58999999999999888776553
No 321
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=87.44 E-value=5.1 Score=41.85 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHH
Q 003262 61 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALG 96 (835)
Q Consensus 61 QakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLG 96 (835)
|.+++..+..++..+ ..+.|+|+.|.|||++.-
T Consensus 32 ~~~~~~~l~~~l~~~---~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 32 QKYMINRLLIGICTG---GHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp CHHHHHHHHHHHHHT---CCEEEESCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHcC---CeEEEECCCCCcHHHHHH
Confidence 444444454555443 479999999999998764
No 322
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=87.40 E-value=1 Score=39.64 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=40.0
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLT 708 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~ 708 (835)
..||..|..||..+. ++++..+||++|+++.+-|-..++++.+|+-
T Consensus 28 ~~Lt~rE~~Vl~l~~-~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 28 DVLTPRECLILQEVE-KGFTNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp -CCCHHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 579999998887766 9999999999999999999988888888763
No 323
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=87.05 E-value=1.6 Score=50.99 Aligned_cols=64 Identities=13% Similarity=0.051 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcEEEecCChHhHHHHHH
Q 003262 58 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI-AAGYSNIFVTAPSPENLKTLFE 125 (835)
Q Consensus 58 T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai-~~g~~nI~VTAPs~enl~tlFe 125 (835)
...|.+.+.++.+++.++ +.+++-|+.|.|||.+.-+.+-..+ ..| .+|+|.+|+.+-...+++
T Consensus 5 R~~Q~~~~~~v~~~l~~~---~~~~~~apTGtGKT~a~l~p~l~~~~~~~-~kvli~t~T~~l~~Qi~~ 69 (620)
T 4a15_A 5 RQYQVEAIDFLRSSLQKS---YGVALESPTGSGKTIMALKSALQYSSERK-LKVLYLVRTNSQEEQVIK 69 (620)
T ss_dssp CHHHHHHHHHHHHHHHHS---SEEEEECCTTSCHHHHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC---CCEEEECCCCCCHHHHHHHHHHHhhhhcC-CeEEEECCCHHHHHHHHH
Confidence 457888888888888764 5799999999999987655443333 334 589999999997766654
No 324
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=86.44 E-value=3.4 Score=48.08 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=45.7
Q ss_pred cccccCCcHHHHHHHHHHHHHHhccC--CCcEEEEEcCCCCCHHHHHHHHHHHHHHcC------CCcEEEecCC
Q 003262 51 PLIKKCSTLDQGKAVITFLDAILDKT--LRSTVALLAARGRGKSAALGLAIAGAIAAG------YSNIFVTAPS 116 (835)
Q Consensus 51 ~Lv~~~~T~DQakAl~~~~~~i~ek~--~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g------~~nI~VTAPs 116 (835)
+.+....-.-|.++|..+.+.+.... ...-.+|..+-|-|||-.....++.++..+ ..+++|.+|.
T Consensus 50 p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~ 123 (644)
T 1z3i_X 50 PVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS 123 (644)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH
T ss_pred hhhhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH
Confidence 44456677899999988877664321 123467778899999987665666666554 3468888996
No 325
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=86.09 E-value=5.6 Score=42.18 Aligned_cols=34 Identities=6% Similarity=-0.092 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHH
Q 003262 61 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAAL 95 (835)
Q Consensus 61 QakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaL 95 (835)
|.+++..+...|..++ ....+++|++|.||+++.
T Consensus 2 ~~~~~~~L~~~i~~~~-~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 2 AKDQLETLKRIIEKSE-GISILINGEDLSYPREVS 35 (305)
T ss_dssp --CHHHHHHHHHHTCS-SEEEEEECSSSSHHHHHH
T ss_pred hHHHHHHHHHHHHCCC-CcEEEEECCCCCCHHHHH
Confidence 5667777878787776 557899999999998754
No 326
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=85.50 E-value=1.1 Score=48.22 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH------cCCCcEEEecCC---hHhHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIA------AGYSNIFVTAPS---PENLKTL 123 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~------~g~~nI~VTAPs---~enl~tl 123 (835)
.+.+.|+|+.|.|||+++=-.++.+.. .|..-+||++-. ++.+...
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~ 176 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI 176 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH
Confidence 357899999999999976433332221 244557888866 4444443
No 327
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=85.41 E-value=3.2 Score=48.96 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 61 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 61 QakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
|...+..+++.+..++ ...++|+|++|.|||++.-. +|..+
T Consensus 191 r~~~i~~l~~~l~~~~-~~~vlL~G~~GtGKT~la~~-la~~l 231 (758)
T 1r6b_X 191 REKELERAIQVLCRRR-KNNPLLVGESGVGKTAIAEG-LAWRI 231 (758)
T ss_dssp CHHHHHHHHHHHTSSS-SCEEEEECCTTSSHHHHHHH-HHHHH
T ss_pred CHHHHHHHHHHHhccC-CCCeEEEcCCCCCHHHHHHH-HHHHH
Confidence 4455666677665543 46789999999999997743 34433
No 328
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=85.25 E-value=4.7 Score=47.31 Aligned_cols=66 Identities=29% Similarity=0.284 Sum_probs=49.9
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHH
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFV 127 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~ 127 (835)
..|-||.+|+..+++.+..+. +..+|+|..|.||+.++- .++..-...++|-+|+..-+..|++=+
T Consensus 8 ~~~~~q~~ai~~l~~~~~~~~--~~~~l~g~tgs~kt~~~a----~~~~~~~~~~lvv~~~~~~A~ql~~el 73 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALRDGE--RFVTLLGATGTGKTVTMA----KVIEALGRPALVLAPNKILAAQLAAEF 73 (664)
T ss_dssp CCCTTHHHHHHHHHHHHHTTC--SEEEEEECTTSCHHHHHH----HHHHHHTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHhcCC--CcEEEEcCCCcHHHHHHH----HHHHHhCCCEEEEecCHHHHHHHHHHH
Confidence 467899999999998887653 346789999999998774 333321246899999999888887543
No 329
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=85.01 E-value=2.1 Score=51.85 Aligned_cols=71 Identities=15% Similarity=0.043 Sum_probs=49.4
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccc
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 135 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lg 135 (835)
..|.-|..++..++ ++ + +..|..|.|||++-+|.+..-...| ..+.|-+|+.+=+....+.+.+-...+|
T Consensus 83 ~pt~VQ~~~ip~ll----~G---~--Iaea~TGeGKTlaf~LP~~l~aL~g-~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 83 FPFKVQLMGGVALH----DG---N--IAEMKTGEGKTLTSTLPVYLNALTG-KGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp CCCHHHHHHHHHHH----TT---S--EEECCTTSCHHHHHHHHHHHHHTTS-SCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHhhHHHh----CC---C--EEEccCCcHHHHHHHHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 45777888876553 23 2 7899999999999998876322235 3688889999988877766554444444
Q ss_pred c
Q 003262 136 Y 136 (835)
Q Consensus 136 y 136 (835)
.
T Consensus 153 l 153 (844)
T 1tf5_A 153 L 153 (844)
T ss_dssp C
T ss_pred C
Confidence 3
No 330
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=84.75 E-value=1.9 Score=47.18 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
.+.+.|.|+.|.|||++.=-.++.+...|..-+||++..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 457899999999999866444444545676668888765
No 331
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=84.72 E-value=2.9 Score=37.47 Aligned_cols=46 Identities=22% Similarity=0.118 Sum_probs=40.7
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLT 708 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~ 708 (835)
..||+.|..||.. ..++.+..+||++||++.+-|-..+.++.+|+-
T Consensus 33 ~~Lt~re~~Vl~l-~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 33 KRLSPKESEVLRL-FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSCCHHHHHHHHH-HHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 6799999988876 579999999999999999999888888888774
No 332
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=84.11 E-value=3.8 Score=44.64 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
.+.+.|+|+.|.|||++.=-.++.+...|..-+||++..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 458999999999999977554455556677778898843
No 333
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=83.95 E-value=1.1 Score=39.02 Aligned_cols=46 Identities=17% Similarity=0.217 Sum_probs=40.1
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLT 708 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~ 708 (835)
..|++.|..||..+ +++.|..+||+.+|++.+-|-..+.++.+|+-
T Consensus 28 ~~Lt~~e~~vl~l~-~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 28 EMLTEREMEILLLI-AKGYSNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GGCCSHHHHHHHHH-HTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 45888998888774 89999999999999999999888888887764
No 334
>2d4p_A Hypothetical protein TTHA1254; structural genomics, NPPSFA, national project on protein STR and functional analyses; 1.70A {Thermus thermophilus} SCOP: d.108.1.1 PDB: 2d4o_A
Probab=83.90 E-value=1.3 Score=42.65 Aligned_cols=81 Identities=14% Similarity=0.072 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcccCCChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCC
Q 003262 316 LFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGD 395 (835)
Q Consensus 316 ~fLq~~~aLlV~AHYkNsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~Gd 395 (835)
.=+..|..|+-.-. .+...|.++ .+.-++||+.. + +.|+|.||+-.- + .|
T Consensus 9 ~D~~~l~~L~~~~~--~~~~~L~~~--~~~~~~fVAe~-----~---g~ivG~v~l~~~-----------i-~g------ 58 (141)
T 2d4p_A 9 EDLDRLNRLAGKRP--VSLGALRFF--ARTGHSFLAEE-----G---EEPMGFALAQAV-----------W-QG------ 58 (141)
T ss_dssp GGHHHHHHTSTTSC--CCHHHHHHH--HHHSCCEEEEE-----T---TEEEEEEEEEEE-----------E-CS------
T ss_pred HHHHHHHHHHccCc--chHHHHHhc--CCCCeEEEEEE-----C---CEEEEEEeeeeE-----------E-Ec------
Confidence 33455556655322 788888888 34455666652 1 468885544310 0 00
Q ss_pred chhHHHHHhhccCCCCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHhc
Q 003262 396 QIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEG 446 (835)
Q Consensus 396 LIPw~ls~q~~d~~f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g 446 (835)
.-.-+-|-.++ ||++|+|+.+|+...++...
T Consensus 59 ----------------dg~~~~L~dl~----~R~~GIG~~Ll~~a~~~a~~ 89 (141)
T 2d4p_A 59 ----------------EATTVLVTRIE----GRSVEALRGLLRAVVKSAYD 89 (141)
T ss_dssp ----------------SSEEEEEEEEE----ESSHHHHHHHHHHHHHHHHH
T ss_pred ----------------CCeEEEEeHHh----hccccHHHHHHHHHHHHHHH
Confidence 00113355666 99999999999999998753
No 335
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=83.87 E-value=1.5 Score=45.23 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
+.++|+|+||.|||+++--.+..+ | -++|....
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER---P--GILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc---C--cEEEEeec
Confidence 589999999999999987654432 3 56776543
No 336
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=83.58 E-value=0.99 Score=46.94 Aligned_cols=39 Identities=18% Similarity=0.094 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCCCHH-HHHHHHHHHHHHcCCCcEEEecCChH
Q 003262 78 RSTVALLAARGRGKS-AALGLAIAGAIAAGYSNIFVTAPSPE 118 (835)
Q Consensus 78 r~~v~LTA~RGRGKS-AaLGlaiA~ai~~g~~nI~VTAPs~e 118 (835)
....++||+-|.||| ++||++.-+ ...|. +++|--|..+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~-~~~g~-kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRF-QIAQY-KCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH-HTTTC-CEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH-HHCCC-eEEEEeecCC
Confidence 357899999999999 666765433 33454 5655557654
No 337
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=83.18 E-value=4.9 Score=42.66 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=17.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGLAI 99 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlai 99 (835)
..++|+|++|.|||+++-+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia 72 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIA 72 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 468999999999999987643
No 338
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=82.89 E-value=2 Score=48.13 Aligned_cols=43 Identities=21% Similarity=0.382 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 003262 61 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA 105 (835)
Q Consensus 61 QakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~ 105 (835)
|.+.+..+++.+..++ +..++|+|++|.|||++.- ++|..+..
T Consensus 185 r~~~i~~l~~~l~r~~-~~~~LL~G~pG~GKT~la~-~la~~l~~ 227 (468)
T 3pxg_A 185 RSKEIQRVIEVLSRRT-KNNPVLIGEPGVGKTAIAE-GLAQQIIN 227 (468)
T ss_dssp CHHHHHHHHHHHHCSS-SCEEEEESCTTTTTHHHHH-HHHHHHHS
T ss_pred cHHHHHHHHHHHhccC-CCCeEEECCCCCCHHHHHH-HHHHHHHh
Confidence 4555666677665544 4578999999999999764 45555544
No 339
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=82.68 E-value=2.9 Score=47.72 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=48.5
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFV 127 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~ 127 (835)
....|.+.+..+.+++.++ +.+++.|+.|.|||.+.-+.+-. . ...|+|.+|+.+-...+.+-+
T Consensus 4 ~r~~Q~~~~~~v~~~l~~~---~~~~~~a~TGtGKT~~~l~p~l~---~-~~~v~i~~pt~~l~~q~~~~~ 67 (551)
T 3crv_A 4 LRDWQEKLKDKVIEGLRNN---FLVALNAPTGSGKTLFSLLVSLE---V-KPKVLFVVRTHNEFYPIYRDL 67 (551)
T ss_dssp CCHHHHHHHHHHHHHHHTT---CEEEEECCTTSSHHHHHHHHHHH---H-CSEEEEEESSGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcC---CcEEEECCCCccHHHHHHHHHHh---C-CCeEEEEcCCHHHHHHHHHHH
Confidence 3467888888888888765 47899999999998776443322 2 358999999999888776543
No 340
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=82.66 E-value=2.2 Score=51.69 Aligned_cols=71 Identities=13% Similarity=-0.043 Sum_probs=48.1
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccc
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 135 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lg 135 (835)
..|.-|..++..++ .+ + +..+..|.|||++-+|.+......|. .+.|-+|+.+=+...++.+.+-...+|
T Consensus 74 ~p~~VQ~~~i~~ll----~G---~--Iaem~TGsGKTlaf~LP~l~~~l~g~-~vlVltPTreLA~Q~~e~~~~l~~~lg 143 (853)
T 2fsf_A 74 RHFDVQLLGGMVLN----ER---C--IAEMRTGEGKTLTATLPAYLNALTGK-GVHVVTVNDYLAQRDAENNRPLFEFLG 143 (853)
T ss_dssp CCCHHHHHHHHHHH----SS---E--EEECCTTSCHHHHHHHHHHHHHTTSS-CCEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred CCChHHHhhccccc----CC---e--eeeecCCchHHHHHHHHHHHHHHcCC-cEEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 34666777765443 22 2 78999999999999988764333454 688889999977777666544444444
Q ss_pred c
Q 003262 136 Y 136 (835)
Q Consensus 136 y 136 (835)
.
T Consensus 144 l 144 (853)
T 2fsf_A 144 L 144 (853)
T ss_dssp C
T ss_pred C
Confidence 3
No 341
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.41 E-value=2.4 Score=55.98 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=32.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCh
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP 117 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~ 117 (835)
.+.+.|+|+.|.|||.+.--.++.+...|+.-+|+++...
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 4589999999999999775555666677888889998854
No 342
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.36 E-value=4.2 Score=42.50 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEec
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTA 114 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTA 114 (835)
.+.+.|+|+.|.|||++. -++|..+ |..-|.|..
T Consensus 36 p~~lLl~GppGtGKT~la-~aiA~~l--~~~~i~v~~ 69 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQC-ELVFRKM--GINPIMMSA 69 (293)
T ss_dssp CSEEEEEECTTSCHHHHH-HHHHHHH--TCCCEEEEH
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHh--CCCEEEEeH
Confidence 346889999999999854 3444443 655566654
No 343
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=82.16 E-value=4.1 Score=43.61 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEe
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVT 113 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VT 113 (835)
...++|+|+.|.|||++.- ++|..+ |..-+.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~-~la~~l--~~~~~~~~ 104 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ-TLAKHL--DIPIAISD 104 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH-HHHHHT--TCCEEEEE
T ss_pred CCCEEEECCCCCCHHHHHH-HHHHHh--CCCEEEec
Confidence 3579999999999998553 334333 44334443
No 344
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=82.11 E-value=0.88 Score=48.37 Aligned_cols=46 Identities=11% Similarity=0.203 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc------CCCcEEEecCC---hHhHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAA------GYSNIFVTAPS---PENLKTL 123 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~------g~~nI~VTAPs---~enl~tl 123 (835)
.+.+.|+|+.|.|||++.=..++.+... |..-+||+.-. ++.+...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~ 161 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENM 161 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH
Confidence 4589999999999999764333322211 44458998876 4555544
No 345
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=81.99 E-value=2.5 Score=40.22 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=29.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHH
Q 003262 80 TVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLK 121 (835)
Q Consensus 80 ~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~ 121 (835)
.++|||..|.||||..-.....+-..|+.-|....|....+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~g 43 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETG 43 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCCCCcHH
Confidence 479999999999999887666555568765655566554443
No 346
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=81.60 E-value=1.3 Score=44.88 Aligned_cols=40 Identities=20% Similarity=0.151 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPE 118 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~e 118 (835)
....+++|+-|.|||+.|=-++......|. ++++-.|..+
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~-kvl~~kp~~D 59 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQY-KCLVIKYAKD 59 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTC-CEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCC-eEEEEccccC
Confidence 347899999999999888777777776674 5655557643
No 347
>2p0w_A Histone acetyltransferase type B catalytic subuni; HAT1, structural genomics, structural genomics consortium, S transferase; HET: ACO; 1.90A {Homo sapiens}
Probab=81.57 E-value=1.1 Score=48.85 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=28.7
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHHHHhc
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTRYYEG 446 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g 446 (835)
-.||.-|=|.|.|||+|+|+++++.+.+++..
T Consensus 218 R~RISQ~LILPPyQ~kG~G~~Ll~~iy~~~~~ 249 (324)
T 2p0w_A 218 RPRVSQMLILTPFQGQGHGAQLLETVHRYYTE 249 (324)
T ss_dssp EEEEEEEEECGGGTTSSHHHHHHHHHHHHHHT
T ss_pred cceeEEEEEcCcccccCcHHHHHHHHHHHHhc
Confidence 56777777999999999999999999999875
No 348
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=81.43 E-value=2.7 Score=45.28 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCcEEEecCChHhHHHHHHHHHhhh
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA-------GYSNIFVTAPSPENLKTLFEFVCKGF 131 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~-------g~~nI~VTAPs~enl~tlFef~~kgl 131 (835)
+|.+.+..++.....+.....+.|+|++|.|||++.=..+..+-.. ++.-|.|-.....+-..+|.-+...|
T Consensus 27 ~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L 105 (318)
T 3te6_A 27 EDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAI 105 (318)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHh
Confidence 6666777676655555555678999999999999887665555432 23346777766555555555554433
No 349
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.37 E-value=2.4 Score=47.28 Aligned_cols=46 Identities=26% Similarity=0.325 Sum_probs=29.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCCcEEEecCC---------hHhHHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIA--AGYSNIFVTAPS---------PENLKTLFEFVC 128 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~--~g~~nI~VTAPs---------~enl~tlFef~~ 128 (835)
.+-+.|.|++|.|||.+ |.|++ .|..-+.|.+++ ..++..+|+.+.
T Consensus 182 prGvLL~GPPGTGKTll-----AkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar 238 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLL-----ARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAR 238 (405)
T ss_dssp CCCEEEESCSSSSHHHH-----HHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHH-----HHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHH
Confidence 45689999999999974 33333 354445666653 456667776553
No 350
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=80.83 E-value=1.1 Score=54.57 Aligned_cols=71 Identities=13% Similarity=-0.014 Sum_probs=48.0
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccc
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 135 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lg 135 (835)
..|.-|..++..++ ++ + +..+..|.|||.+-.|.+....-.| ..+.|.+|+.+=.+...+.+..=...+|
T Consensus 111 rP~~VQ~~~ip~Ll----~G---~--Iaem~TGeGKTLa~~LP~~l~aL~g-~~v~VvTpTreLA~Qdae~m~~l~~~lG 180 (922)
T 1nkt_A 111 RPFDVQVMGAAALH----LG---N--VAEMKTGEGKTLTCVLPAYLNALAG-NGVHIVTVNDYLAKRDSEWMGRVHRFLG 180 (922)
T ss_dssp CCCHHHHHHHHHHH----TT---E--EEECCTTSCHHHHTHHHHHHHHTTT-SCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHhHh----cC---C--EEEecCCCccHHHHHHHHHHHHHhC-CCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 44667777776443 22 2 8899999999999988775422245 3689999999877666665544333344
Q ss_pred c
Q 003262 136 Y 136 (835)
Q Consensus 136 y 136 (835)
.
T Consensus 181 L 181 (922)
T 1nkt_A 181 L 181 (922)
T ss_dssp C
T ss_pred C
Confidence 3
No 351
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=80.22 E-value=2.2 Score=45.01 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
...+.|+|+.|.||||+.-+....+-
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45789999999999999876544443
No 352
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=80.17 E-value=2.6 Score=33.29 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 003262 668 QAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLT 708 (835)
Q Consensus 668 q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~ 708 (835)
|..++.. ..++.|..+||+.+|++.+-+-..+.++.+|+-
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 5556655 799999999999999999999888888887764
No 353
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=80.04 E-value=0.6 Score=44.46 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=44.7
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 663 ~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~ 711 (835)
.|++.|+.+++..-+++.|..+||+.+|++.+.|-..+.++.++|-++|
T Consensus 135 ~L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 183 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGDLTHRELAAETGLPLGTIKSRIRLALDRLRQHM 183 (184)
T ss_dssp TSCHHHHHHHHHHHHSCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999999998887654
No 354
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=79.57 E-value=5.1 Score=45.66 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=47.7
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHH
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFV 127 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~ 127 (835)
..+..|.+++..+.+++.++ +.+++.|+.|.|||.+.-+. | +..+ ..|+|.+|+.+-...+++-+
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~---~~~~~~a~TGtGKT~~~l~~-~--~~~~-~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHG---KTLLLNAKPGLGKTVFVEVL-G--MQLK-KKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTT---CEEEEECCTTSCHHHHHHHH-H--HHHT-CEEEEEESCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcC---CCEEEEcCCCCcHHHHHHHH-H--HhCC-CcEEEEcCCHHHHHHHHHHH
Confidence 34668999888888888765 47899999999999764322 2 3333 58999999999887777543
No 355
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.54 E-value=3.3 Score=46.63 Aligned_cols=36 Identities=31% Similarity=0.371 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
.+-+.|.|++|.|||.+. -|+|. ..|..-+.|.+++
T Consensus 215 prGvLL~GPPGtGKTllA-kAiA~--e~~~~~~~v~~s~ 250 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA-KAVAA--TIGANFIFSPASG 250 (437)
T ss_dssp CCEEEEESCTTSSHHHHH-HHHHH--HHTCEEEEEEGGG
T ss_pred CCeEEEECCCCCcHHHHH-HHHHH--HhCCCEEEEehhh
Confidence 467999999999999753 22232 2365446666653
No 356
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.35 E-value=4.9 Score=45.07 Aligned_cols=48 Identities=23% Similarity=0.350 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC---------hHhHHHHHHHH
Q 003262 77 LRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS---------PENLKTLFEFV 127 (835)
Q Consensus 77 ~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs---------~enl~tlFef~ 127 (835)
.++-+.|.|++|.|||.+.- |+|.. .|..-+.|..++ ..++..+|+.+
T Consensus 205 ~prGiLL~GPPGtGKT~lak-AiA~~--~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A 261 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVK-AVANS--TKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLA 261 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHH-HHHHH--HTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH-HHHHH--hCCCeEEEecchhhccccchhHHHHHHHHHHH
Confidence 34569999999999998542 33332 354445666554 35566666654
No 357
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=79.22 E-value=3.6 Score=42.41 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=25.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
+.++|+|+||-|||+++--.+..+ +..-++|...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEch
Confidence 489999999999999997554432 3345777654
No 358
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=79.05 E-value=1.3 Score=53.24 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=18.0
Q ss_pred CcEEEEecccCCCHHHHHHhh
Q 003262 183 VELLVIDEAAAIPLPVVRSLL 203 (835)
Q Consensus 183 adLLvIDEAAAIPlpllk~Ll 203 (835)
..+|+|||+-.+|..+...|+
T Consensus 661 ~~vl~lDEi~~l~~~~~~~Ll 681 (854)
T 1qvr_A 661 YSVILFDEIEKAHPDVFNILL 681 (854)
T ss_dssp SEEEEESSGGGSCHHHHHHHH
T ss_pred CeEEEEecccccCHHHHHHHH
Confidence 469999999999999877666
No 359
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=79.03 E-value=7 Score=46.24 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=18.9
Q ss_pred CCcEEEEecccCCCHHHHHHhh
Q 003262 182 QVELLVIDEAAAIPLPVVRSLL 203 (835)
Q Consensus 182 ~adLLvIDEAAAIPlpllk~Ll 203 (835)
...+|++||+-.++..+...|+
T Consensus 579 ~~~vl~lDEi~~~~~~~~~~Ll 600 (758)
T 3pxi_A 579 PYSVVLLDAIEKAHPDVFNILL 600 (758)
T ss_dssp SSSEEEEECGGGSCHHHHHHHH
T ss_pred CCeEEEEeCccccCHHHHHHHH
Confidence 3569999999999998887777
No 360
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=78.61 E-value=1.1 Score=54.84 Aligned_cols=73 Identities=14% Similarity=0.044 Sum_probs=51.6
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
...|.-|..++..++. + + +..+..|.|||.+..|++......|. .+.|.+|+.+=.+..++.+..-+..+
T Consensus 78 ~~Pt~VQ~~~ip~Llq----G--~---IaeakTGeGKTLvf~Lp~~L~aL~G~-qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 78 MRHFDVQLIGGAVLHE----G--K---IAEMKTGEGKTLVATLAVALNALTGK-GVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp CCCCHHHHHHHHHHHT----T--S---EEECCSTHHHHHHHHHHHHHHHTTCS-CCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHhhcccccC----C--c---eeeccCCCchHHHHHHHHHHHHHhCC-CEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 3457778888765532 2 2 78999999999999988764444564 68899999997777776665545555
Q ss_pred ccc
Q 003262 135 EYK 137 (835)
Q Consensus 135 gy~ 137 (835)
|..
T Consensus 148 GLs 150 (997)
T 2ipc_A 148 GLS 150 (997)
T ss_dssp TCC
T ss_pred CCe
Confidence 543
No 361
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=78.25 E-value=12 Score=44.08 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=18.1
Q ss_pred CCcEEEEecccCCCHHHHHHhh
Q 003262 182 QVELLVIDEAAAIPLPVVRSLL 203 (835)
Q Consensus 182 ~adLLvIDEAAAIPlpllk~Ll 203 (835)
...+|+|||+-.++..++..|+
T Consensus 557 ~~~vl~lDEi~~~~~~~~~~Ll 578 (758)
T 1r6b_X 557 PHAVLLLDEIEKAHPDVFNILL 578 (758)
T ss_dssp SSEEEEEETGGGSCHHHHHHHH
T ss_pred CCcEEEEeCccccCHHHHHHHH
Confidence 3579999999999988766665
No 362
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=78.06 E-value=9.6 Score=44.70 Aligned_cols=131 Identities=21% Similarity=0.263 Sum_probs=79.8
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhcccc
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 135 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lg 135 (835)
..+-||.+++..+++.+..+. +..+|+|..|.||+-++- .++..-...++|-+|+..-+..|++=+..=|.
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~--~~~~l~g~~gs~k~~~~a----~~~~~~~~~~lvv~~~~~~A~~l~~el~~~~~--- 82 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGK--KHQTLLGATGTGKTFTVS----NLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFP--- 82 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTC--SEEEEEECTTSCHHHHHH----HHHHHHCCCEEEECSSHHHHHHHHHHHHHHCT---
T ss_pred CCCCCCHHHHHHHHHHHhcCC--CcEEEECcCCcHHHHHHH----HHHHHhCCCEEEEECCHHHHHHHHHHHHHHcC---
Confidence 456799999999998887664 346789999999998773 33332134789999999998888754321110
Q ss_pred ccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCC-------HHHHHHhhcCCeE
Q 003262 136 YKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIP-------LPVVRSLLGPYLV 208 (835)
Q Consensus 136 y~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIP-------lpllk~Ll~~y~v 208 (835)
+ + .|..|-.. -.|++|+. .++..|. .+.+.+++. +..+.+|+.+--+
T Consensus 83 --~---------------~---~v~~fps~---yd~~~pe~--~~~~~d~-y~~~~~~~~~~i~~~Rl~~l~~L~~~~~~ 136 (661)
T 2d7d_A 83 --N---------------N---AVEYFVSY---YDYYQPEA--YVPQTDT-FIEKDASINDEIDKLRHSATSALFERRDV 136 (661)
T ss_dssp --T---------------S---EEEEECCC---EEEEECCE--EETTTTE-EECCEEEECHHHHHHHHHHHHHHHHCSCE
T ss_pred --C---------------C---cEEEcccc---ccccCccc--cCCcchh-hhhhhcccCHHHHHHHHHHHHHHHhCCCe
Confidence 0 0 12222221 34566642 2345676 455666665 5667778744434
Q ss_pred EEEeeccCCcccC
Q 003262 209 FLSSTVNGYEGTG 221 (835)
Q Consensus 209 flsSTi~GYEGTG 221 (835)
++-+|+.+--|.|
T Consensus 137 ivV~sv~al~~l~ 149 (661)
T 2d7d_A 137 IIIASVSCIYGLG 149 (661)
T ss_dssp EEEECGGGGSCBC
T ss_pred EEEecHHHHcCCC
Confidence 4456666643333
No 363
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=77.46 E-value=0.81 Score=43.32 Aligned_cols=50 Identities=10% Similarity=0.164 Sum_probs=44.6
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 711 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~ 711 (835)
..|++.|+.+++..-+++.|..+||+.+|++.+.|-..+.++.++|-+.+
T Consensus 92 ~~Lp~~~r~vl~L~~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 92 ARMTPLSRQALLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp TTSCTTHHHHHTTTSSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 45888999999999999999999999999999999999999988876544
No 364
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=77.28 E-value=4.6 Score=47.77 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 003262 61 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA 105 (835)
Q Consensus 61 QakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~ 105 (835)
|.+.+..+++.+..++ +..++|+|++|.|||++. -++|..+..
T Consensus 185 ~~~~i~~l~~~l~~~~-~~~vLL~G~pGtGKT~la-~~la~~l~~ 227 (758)
T 3pxi_A 185 RSKEIQRVIEVLSRRT-KNNPVLIGEPGVGKTAIA-EGLAQQIIN 227 (758)
T ss_dssp CHHHHHHHHHHHHCSS-SCEEEEESCTTTTTHHHH-HHHHHHHHS
T ss_pred chHHHHHHHHHHhCCC-CCCeEEECCCCCCHHHHH-HHHHHHHhc
Confidence 4556666777665544 457899999999999865 345555543
No 365
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=77.27 E-value=5.3 Score=43.56 Aligned_cols=40 Identities=10% Similarity=-0.056 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCCh
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSP 117 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAPs~ 117 (835)
+..+.|.|+.|.|||+++=-+++.+... |..-+||++...
T Consensus 28 ~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 28 SGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp SEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 3467899999999999865555555554 555689998754
No 366
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=77.19 E-value=12 Score=42.77 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
.+.+.|+|+.|.|||+++- ++|... +..-|.|..+
T Consensus 64 p~GvLL~GppGtGKTtLar-aIa~~~--~~~~i~i~g~ 98 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLAR-AVAGEA--RVPFITASGS 98 (499)
T ss_dssp CSEEEEECSSSSSHHHHHH-HHHHHT--TCCEEEEEGG
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHh--CCCEEEEehh
Confidence 3459999999999999874 344433 3334556554
No 367
>3dns_A Ribosomal-protein-alanine acetyltransferase; N-terminal domain of ribosomal-protein-alanine acetyltransfe MCSG, PSI; 2.10A {Clostridium acetobutylicum}
Probab=77.09 E-value=3.8 Score=39.26 Aligned_cols=77 Identities=10% Similarity=-0.038 Sum_probs=54.9
Q ss_pred EEEEeeCcccccCC---hHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccc
Q 003262 418 IVRIATHPSAMRLG---YGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHL 494 (835)
Q Consensus 418 IVRIAvhPd~q~mG---yGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~v~~~~~~~~l~~e~i~~r~~~ppLl~~l 494 (835)
-++|.+.++ |.| ||+.|+.++.+|.=.+.
T Consensus 48 ~i~I~Igk~--gkG~~~ygtEAl~l~l~y~F~el---------------------------------------------- 79 (135)
T 3dns_A 48 MFRMKIYKQ--GKSINTYIKEILSVFMEFLFKSN---------------------------------------------- 79 (135)
T ss_dssp EEEEEECCC--SSCCHHHHHHHHHHHHHHHHHHS----------------------------------------------
T ss_pred EEEEEEeeC--CCChHHHHHHHHHHHHHHHHHhc----------------------------------------------
Confidence 578888888 999 99999999999862111
Q ss_pred cccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCCceEEEEccCC
Q 003262 495 RERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLH 549 (835)
Q Consensus 495 ~e~~~~~lDylGvSFGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEhS~IMlr~L~ 549 (835)
.-.++...--|| ..++.|+|+||.--.+....--..|.+.=+.+-.+-
T Consensus 80 ---nlhKi~l~v~~~----~ai~~yeKlGF~~EG~lR~~i~~~G~y~D~i~mgil 127 (135)
T 3dns_A 80 ---DINKVNIIVDEE----VSTQPFVELGFAFEGIINKSIIEKNVLKDEFLFGMD 127 (135)
T ss_dssp ---CCSEEEEEEETT----SCSHHHHHTTCEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ---CceEEEEEEecH----HHHHHHHHcCCeEeeeeeeeEEECCEEeeehhhhhc
Confidence 001122222233 778999999999999887777778988777666554
No 368
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=76.79 E-value=10 Score=38.39 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=41.0
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLT 708 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~ 708 (835)
..||+.|..||..+ .+++|..+||++||++.+-|...++++.+|+-
T Consensus 174 ~~Lt~re~~vl~~~-~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (237)
T 3szt_A 174 VRLTARETEMLKWT-AVGKTYGEIGLILSIDQRTVKFHIVNAMRKLN 219 (237)
T ss_dssp CCCCHHHHHHHHHH-HTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHH-HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 67999999888664 79999999999999999999998888888864
No 369
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=76.65 E-value=5.8 Score=38.21 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
..++|+|..|.||||..-.....+-..|++-+.+..|.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~ 47 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPE 47 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCC
Confidence 47999999999999988766554444576655566664
No 370
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=76.48 E-value=12 Score=43.42 Aligned_cols=46 Identities=20% Similarity=0.400 Sum_probs=27.8
Q ss_pred cCCcH-HHHHHHHHHHHHHhccCCC-----cEEEEEcCCCCCHHHHHHHHHH
Q 003262 55 KCSTL-DQGKAVITFLDAILDKTLR-----STVALLAARGRGKSAALGLAIA 100 (835)
Q Consensus 55 ~~~T~-DQakAl~~~~~~i~ek~~r-----~~v~LTA~RGRGKSAaLGlaiA 100 (835)
++.+. +..+.++..++.+..-... ..++|.|+.|.||||+|-+.+.
T Consensus 16 l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 16 LCSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp ----CHHHHHHHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhC
Confidence 34433 3345566677655542211 2489999999999999976543
No 371
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=76.38 E-value=6.3 Score=38.43 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=29.4
Q ss_pred HHHHHHhcc--CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEe
Q 003262 67 TFLDAILDK--TLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVT 113 (835)
Q Consensus 67 ~~~~~i~ek--~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VT 113 (835)
.+++.+... .....+.|+|+.|.||||++-.....+-..|. .|++.
T Consensus 9 ~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~-~v~~~ 56 (201)
T 1rz3_A 9 FLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGI-SVCVF 56 (201)
T ss_dssp HHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred HHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC-eEEEe
Confidence 344555543 22357999999999999998876554434454 34443
No 372
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=76.15 E-value=3 Score=49.84 Aligned_cols=59 Identities=15% Similarity=-0.083 Sum_probs=38.9
Q ss_pred cCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCC
Q 003262 55 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPS 116 (835)
Q Consensus 55 ~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAPs 116 (835)
.....-|.++|..++.....+ .-.+|..+-|-|||-....+++.++.. ....++|.+|.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~---~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~ 295 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKG---DNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPL 295 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTT---CCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCT
T ss_pred CCcCHHHHHHHHHHHHHhhcC---CCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECc
Confidence 345567999998776654433 245788899999997655455544432 24467888884
No 373
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.53 E-value=1.3 Score=46.58 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHH-hccCCCcEEEEEcCCCCCHHHHHHHHH
Q 003262 61 QGKAVITFLDAI-LDKTLRSTVALLAARGRGKSAALGLAI 99 (835)
Q Consensus 61 QakAl~~~~~~i-~ek~~r~~v~LTA~RGRGKSAaLGlai 99 (835)
|.+++..+..++ ..+.... +.|+|++|.|||+++-..+
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la 57 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALL 57 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHH
T ss_pred CHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHH
Confidence 445555555555 4454444 9999999999999886543
No 374
>3shp_A Putative acetyltransferase STHE_0691; PSI-biology, midwest center for structural genomics, MCSG; HET: SRT; 2.21A {Sphaerobacter thermophilus}
Probab=75.32 E-value=4.7 Score=37.95 Aligned_cols=36 Identities=8% Similarity=-0.101 Sum_probs=27.5
Q ss_pred cCCCHHHHHHHHHCCCeEEEeeecccCCCCCc--eEEE
Q 003262 509 FGLTLDLFRFWRKHKFAPFYVSQNANAVTGEH--TCMV 544 (835)
Q Consensus 509 FGlT~~Ll~FWkk~GF~pVylrq~~ne~TGEh--S~IM 544 (835)
+.-+....++|+|+||+.+..+.......|+. .++|
T Consensus 127 ~~~N~~s~~l~ek~GF~~~G~~r~~~~~~g~~~D~~~~ 164 (176)
T 3shp_A 127 AADEQRTLAAAEAAGLKAAVRMREAIARAGHRVDLLIY 164 (176)
T ss_dssp ETTCHHHHHHHHHTTCEEEEEEEEEEEETTEEEEEEEE
T ss_pred cCCCHHHHHHHHHCCCEEEEEeeeeEEeCCEEEEEEEE
Confidence 34489999999999999999887765667743 4444
No 375
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=75.25 E-value=2.9 Score=41.90 Aligned_cols=38 Identities=24% Similarity=0.110 Sum_probs=29.4
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHH
Q 003262 57 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAG 101 (835)
Q Consensus 57 ~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ 101 (835)
+|..|..++..+ .. ...+.|+|+.|.||||+|-+.+..
T Consensus 8 k~~g~~~~l~~i----~~---Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 8 KTLGQKHYVDAI----DT---NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSHHHHHHHHHH----HH---CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCHhHHHHHHhc----cC---CCEEEEECCCCCCHHHHHHHHhcC
Confidence 788888776553 33 357899999999999999876544
No 376
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=74.26 E-value=4.3 Score=41.61 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=41.7
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTD 709 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~ 709 (835)
..|++.|+.++... .++.|..+||+.||++.+-|-..+.++.+|+-.
T Consensus 196 ~~L~~~erevl~L~-~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCI-RKGLSSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 46899999888887 799999999999999999999999998887753
No 377
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=74.18 E-value=3.9 Score=40.29 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcEEEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAI-AAGYSNIFVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai-~~g~~nI~VTAPs 116 (835)
...++|+|+.|.|||+++-..+...+ ..+..-++++.-.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 35899999999999999987664333 5666666666543
No 378
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=74.08 E-value=15 Score=50.14 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=25.5
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHH
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALG 96 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLG 96 (835)
-.|.|-.+-- .+++.+... ++++.|+|+.|.|||++.-
T Consensus 1248 VpT~DT~R~~-~ll~~~l~~--~~~vLL~GPpGtGKT~la~ 1285 (2695)
T 4akg_A 1248 IPTIDTIKHE-KIFYDLLNS--KRGIILCGPPGSGKTMIMN 1285 (2695)
T ss_dssp CCCHHHHHHH-HHHHHHHHH--TCEEEEECSTTSSHHHHHH
T ss_pred EeccchHHHH-HHHHHHHHC--CCeEEEECCCCCCHHHHHH
Confidence 3566666532 244444433 3689999999999999763
No 379
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=73.62 E-value=3.8 Score=44.65 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEec
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTA 114 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTA 114 (835)
.+.++|+|+.|.|||++. +.+|.. .|+.-+||+.
T Consensus 123 gsviLI~GpPGsGKTtLA-lqlA~~--~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLV-HALGEA--LGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHH-HHHHHH--HHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHH-HHHHHh--CCCCEEEEEe
Confidence 346789999999999854 333333 5665577777
No 380
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=73.49 E-value=4.7 Score=39.01 Aligned_cols=39 Identities=28% Similarity=0.267 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
...++|+|+.|.|||+++-..+..+...|..-++++.+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 357899999999999998766655555555445666544
No 381
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=72.89 E-value=5.5 Score=44.35 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=33.0
Q ss_pred cccccCCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHH
Q 003262 51 PLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIA 100 (835)
Q Consensus 51 ~Lv~~~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA 100 (835)
.|.++..+.++..++..+ + . .....++|+|+.|.||||+|-..+.
T Consensus 145 ~l~~Lg~~~~~~~~L~~l---~-~-~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 145 DLHSLGMTAHNHDNFRRL---I-K-RPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp CGGGSCCCHHHHHHHHHH---H-T-SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CHHHcCCCHHHHHHHHHH---H-H-hcCCeEEEECCCCCCHHHHHHHHHh
Confidence 466677888887766555 2 2 2345899999999999999976544
No 382
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=72.63 E-value=6.6 Score=38.41 Aligned_cols=38 Identities=29% Similarity=0.234 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcc-CCCcEEEEEcCCCCCHHHHHHHHHHH
Q 003262 64 AVITFLDAILDK-TLRSTVALLAARGRGKSAALGLAIAG 101 (835)
Q Consensus 64 Al~~~~~~i~ek-~~r~~v~LTA~RGRGKSAaLGlaiA~ 101 (835)
.+..+.+.+.+. .....+.|+|+.|.||||++-+....
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344455555443 33458999999999999999765443
No 383
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.43 E-value=3.9 Score=43.16 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 60 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 60 DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
.|.+++..+...+..+.... +.++|++|.|||+++-.. |..+
T Consensus 29 g~~~~~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~l-a~~l 70 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVAL-AREI 70 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHH-HHHH
T ss_pred CcHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHH-HHHH
Confidence 46677777777777765544 899999999999988654 4443
No 384
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=72.37 E-value=4.7 Score=38.19 Aligned_cols=35 Identities=20% Similarity=0.112 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEE
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFV 112 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~V 112 (835)
...++|||..|.||||+.-+....+-..|+.-|.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 35789999999999998776544443446654443
No 385
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=71.73 E-value=4.7 Score=43.54 Aligned_cols=46 Identities=15% Similarity=0.354 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH----cC--CCc-EEEecCC---hHhHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIA----AG--YSN-IFVTAPS---PENLKTLF 124 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~----~g--~~n-I~VTAPs---~enl~tlF 124 (835)
.+.+.|.|+.|.|||+++=..++. +. .| -.+ |+|+.=. ++.+..++
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~-~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~ 186 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVM-VQLPPEEGGLNGSVIWIDTENTFRPERIREIA 186 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH-TTSCGGGTSCSCEEEEEESSSCCCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-hccchhcCCCCCeEEEEeCCCCCCHHHHHHHH
Confidence 458899999999999988655443 32 11 135 8888743 34444444
No 386
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=71.54 E-value=6.6 Score=47.20 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=16.0
Q ss_pred CcEEEEEcCCCCCHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALG 96 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLG 96 (835)
...++|+|+.|.|||+++-
T Consensus 238 ~~~vLL~Gp~GtGKTtLar 256 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCEEEECSCTTSSHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4579999999999998653
No 387
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.52 E-value=6.8 Score=44.53 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=29.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC---------hHhHHHHHHHH
Q 003262 76 TLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS---------PENLKTLFEFV 127 (835)
Q Consensus 76 ~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs---------~enl~tlFef~ 127 (835)
...+-+.|.|+.|.|||.+ .-|+|.- .|..-+.|..+. ..++..+|+.+
T Consensus 241 ~pprGILLyGPPGTGKTlL-AkAiA~e--~~~~fi~vs~s~L~sk~vGesek~ir~lF~~A 298 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLC-ARAVANR--TDATFIRVIGSELVQKYVGEGARMVRELFEMA 298 (467)
T ss_dssp CCCSEEEECSCTTSSHHHH-HHHHHHH--HTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHH-HHHHHhc--cCCCeEEEEhHHhhcccCCHHHHHHHHHHHHH
Confidence 3456799999999999864 2333332 354335555543 24556666554
No 388
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.40 E-value=5.7 Score=44.61 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCh---------HhHHHHHHHH
Q 003262 77 LRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP---------ENLKTLFEFV 127 (835)
Q Consensus 77 ~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~---------enl~tlFef~ 127 (835)
.++-+.|.|++|.|||.+. -|+|. ..|..=+.|.+++. .+++.+|+.+
T Consensus 214 ~prGvLLyGPPGTGKTllA-kAiA~--e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A 270 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLA-RACAA--QTNATFLKLAAPQLVQMYIGEGAKLVRDAFALA 270 (434)
T ss_dssp CCCEEEEESCTTSSHHHHH-HHHHH--HHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHH-HHHHH--HhCCCEEEEehhhhhhcccchHHHHHHHHHHHH
Confidence 3567999999999999752 23332 23544455655542 4566666554
No 389
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.18 E-value=7.7 Score=43.76 Aligned_cols=46 Identities=24% Similarity=0.344 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCCcEEEecCC---------hHhHHHHHHHH
Q 003262 77 LRSTVALLAARGRGKSAALGLAIAGAIA--AGYSNIFVTAPS---------PENLKTLFEFV 127 (835)
Q Consensus 77 ~r~~v~LTA~RGRGKSAaLGlaiA~ai~--~g~~nI~VTAPs---------~enl~tlFef~ 127 (835)
..+-+.|.|+.|.|||.+ |.|++ .|..-+.|.+++ ..++..+|+.+
T Consensus 215 ~prGvLLyGPPGTGKTlL-----AkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~A 271 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLL-----AKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVA 271 (437)
T ss_dssp CCSEEEEESSTTTTHHHH-----HHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHH-----HHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHH
Confidence 356799999999999974 33333 354445565553 34556666554
No 390
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=70.64 E-value=13 Score=37.47 Aligned_cols=128 Identities=13% Similarity=0.111 Sum_probs=79.7
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHHHHHH-HHHcCCCcEEEecCChHhHHHHHHHHHhhhccc
Q 003262 56 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAG-AIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAI 134 (835)
Q Consensus 56 ~~T~DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~-ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~l 134 (835)
-.+.-|..|+-.+... .+...+|.+.-|.+|.+..=-.++. +-..|+ .|.|-||+...-.++-+- .
T Consensus 34 ~~~~~~~~a~~~l~~s-----~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr-~V~vLAp~~~s~~~l~~~-------~ 100 (189)
T 2l8b_A 34 PRTAGYSDAVSVLAQD-----RPSLAIVSGQGGAAGQRERVAELVMMAREQGR-EVQIIAADRRSQMNMKQD-------E 100 (189)
T ss_dssp CCHHHHHHHHHHHHHH-----SCCEECCBCSSCSHHHHHHHHHHHHHHHHTTC-CEEEECSTTHHHHHHSCT-------T
T ss_pred ccCccchhHHHHHhcc-----CCceEEEecccchHHHHHHHHHHHHHHHhcCe-EEEEEcCchHHHHHHHhh-------c
Confidence 3567788887655431 2468899999999999985111221 223464 799999999998876432 2
Q ss_pred cccccccceeeecCCCCCCcceeEeeeeeccceeEEeeCCccccccCCCcEEEEecccCCCHHHHHHhhcC------CeE
Q 003262 135 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLGP------YLV 208 (835)
Q Consensus 135 gy~e~~dy~i~~st~p~~~~aivrvni~~~hrq~Iqyi~P~d~~~l~~adLLvIDEAAAIPlpllk~Ll~~------y~v 208 (835)
+.+.+. + .+ | .+.++.. .+..-++||||||--+.+-=+..|+.. -+|
T Consensus 101 ~l~~~t----~----------------t~-~----~ll~~~~--~~tp~s~lIVD~AekLS~kE~~~Lld~A~~~naqvv 153 (189)
T 2l8b_A 101 RLSGEL----I----------------TG-R----RQLLEGM--AFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVL 153 (189)
T ss_dssp TCSSCS----S----------------ST-T----TTTTTSC--CCCCCCEEEEEESSSHHHHHHHHHHHHHHHTTCCEE
T ss_pred CcCcce----e----------------eh-h----hhhcCCC--CCCCCCEEEEechhhcCHHHHHHHHHHHHhcCCEEE
Confidence 222110 0 00 0 1122221 112446999999999999888888842 355
Q ss_pred EEEeeccCCcccCCchh
Q 003262 209 FLSSTVNGYEGTGRSLS 225 (835)
Q Consensus 209 flsSTi~GYEGTGR~fs 225 (835)
| .-+. +=-|+|..|+
T Consensus 154 l-l~~~-~RqG~GnAl~ 168 (189)
T 2l8b_A 154 I-TDSG-QRTGTGSALM 168 (189)
T ss_dssp E-EESS-TTTCSHHHHH
T ss_pred E-eCCc-ccccCCCHHH
Confidence 5 4444 8889988875
No 391
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=69.68 E-value=9.8 Score=35.82 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCh
Q 003262 80 TVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP 117 (835)
Q Consensus 80 ~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~ 117 (835)
.++|||..|.||||..-.....+-..|+.-|..-.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~ 39 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGG 39 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 57999999999999876655444445775444445543
No 392
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=68.72 E-value=6.8 Score=38.41 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
.+.++|+|+.|.|||+++=-.++.+...|..-++++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 458899999999999985433344445666667777654
No 393
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=68.50 E-value=11 Score=49.98 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=34.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCh
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP 117 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~ 117 (835)
.+.++|+|+.|.|||++.=..++.++..|+.-+|||+...
T Consensus 1081 g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~ 1120 (2050)
T 3cmu_A 1081 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1120 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcccc
Confidence 4689999999999999887777778888999999999864
No 394
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=68.03 E-value=11 Score=36.11 Aligned_cols=38 Identities=13% Similarity=0.059 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
..++|||..|.||||..-.....+-..+++-+.+-.|.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~ 48 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPN 48 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 47999999999999987765444434466544455554
No 395
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=67.64 E-value=1.1 Score=43.96 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKL 707 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl 707 (835)
..|++.|+.||....+++.|+.+||+.+|++.+.|-..+.+++++|
T Consensus 197 ~~L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 242 (243)
T 1l0o_C 197 EELDERERLIVYLRYYKDQTQSEVASRLGISQVQMSRLEKKILQHI 242 (243)
T ss_dssp ----------------------------------------------
T ss_pred HhCCHHHHHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 3578889999999899999999999999999999999999888775
No 396
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=66.94 E-value=9.4 Score=38.36 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=40.7
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLT 708 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~ 708 (835)
..||+.|..+|.- ..+++|..+||+.||++.+-|-..++++.+|+-
T Consensus 174 ~~Lt~~e~~vl~~-~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 174 QMLSPREMLCLVW-ASKGKTASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GSCCHHHHHHHHH-HHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 5699999988766 579999999999999999999998888888874
No 397
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=66.88 E-value=6.4 Score=38.22 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEec
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTA 114 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTA 114 (835)
...++|+|..|.||||++-+.... + | .++|..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~-~--g--~~~i~~ 60 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE-T--G--LEFAEA 60 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH-H--C--CEEEEG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh-h--C--CeEEcc
Confidence 458999999999999988765433 2 5 366653
No 398
>4h6u_A Alpha-tubulin N-acetyltransferase; tubulin acetyltransferase; HET: ACO; 2.45A {Danio rerio} PDB: 4h6z_A*
Probab=66.84 E-value=4.2 Score=41.37 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=21.2
Q ss_pred EEEEeeCcccccCChHHHHHHHHHH
Q 003262 418 IVRIATHPSAMRLGYGSTAVELLTR 442 (835)
Q Consensus 418 IVRIAvhPd~q~mGyGsraL~~L~~ 442 (835)
|--.=||.+.||+|||.++.+.+..
T Consensus 119 vLDFYVhEs~QR~G~Gk~LF~~ML~ 143 (200)
T 4h6u_A 119 VLAFYVTETLQRHGYGSELFDFMLK 143 (200)
T ss_dssp EEEEEECGGGTTSSHHHHHHHHHHH
T ss_pred eeeeeeehhhcccCcHHHHHHHHHH
Confidence 5666899999999999999887654
No 399
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=66.63 E-value=6.4 Score=40.20 Aligned_cols=35 Identities=17% Similarity=0.018 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEe
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVT 113 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VT 113 (835)
..++|+|..|.||||........+-..|+.-|+++
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 36899999999999987665554445787555454
No 400
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=66.48 E-value=9.8 Score=38.19 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=40.9
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLT 708 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~ 708 (835)
..||+.|..+|.- ..+++|..+||+.||++.+-|-..++++.+|+-
T Consensus 172 ~~Lt~~e~~vl~~-~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 172 AWLDPKEATYLRW-IAVGKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCHHHHHHHHH-HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 5799999988766 589999999999999999999999888888874
No 401
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=66.43 E-value=9.3 Score=49.81 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHh
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPEN 119 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~en 119 (835)
.+.+.|+|+.|.|||.+.=-.+..++..|+.-+|||+..+..
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~ 75 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 75 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccH
Confidence 458999999999999864433444566788889999987644
No 402
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=66.09 E-value=4 Score=38.12 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=16.8
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGLA 98 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGla 98 (835)
..++|+|..|.||||++-+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46899999999999977543
No 403
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=65.68 E-value=4.9 Score=38.56 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGLAIA 100 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA 100 (835)
..++|+|+.|.||||++-+.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5799999999999999987544
No 404
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=65.59 E-value=14 Score=26.82 Aligned_cols=37 Identities=19% Similarity=0.165 Sum_probs=28.6
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFV 698 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~la 698 (835)
..|+..+...++.+..++.+..+||+.+|++.+-+..
T Consensus 4 ~~l~~~~~~~i~~~~~~g~s~~~IA~~lgis~~Tv~~ 40 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRV 40 (51)
T ss_dssp CCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHH
Confidence 3567777655666678999999999999999765543
No 405
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=64.93 E-value=14 Score=39.61 Aligned_cols=41 Identities=24% Similarity=0.209 Sum_probs=30.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhH
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENL 120 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl 120 (835)
..++|+|..|.||||++-..+......| .+|.|.+..|...
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~-~~v~V~~~dp~~~ 115 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERG-HKLSVLAVDPSSC 115 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEECCC---
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcC-CeEEEEeecCCCC
Confidence 4799999999999999987666555554 4788888776543
No 406
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=64.91 E-value=3.9 Score=39.35 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGLAIAG 101 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ 101 (835)
++++|+|+.|.||||++-+.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999876543
No 407
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=64.91 E-value=7.8 Score=37.06 Aligned_cols=44 Identities=16% Similarity=0.093 Sum_probs=26.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHH
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTL 123 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tl 123 (835)
..++|+|..|.||||..-.....+-..| .-+....|..+.+..+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~~~~~~~i~~~ 48 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTEWNSSDWIHDI 48 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEETTCCCHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEecCCcHHHHHHH
Confidence 4689999999999997765433322223 2233445544444433
No 408
>4b5o_A Alpha-tubulin N-acetyltransferase; microtubules, cilium, intraflagellar transport; HET: ACO; 1.05A {Homo sapiens} PDB: 4b5p_A*
Probab=64.88 E-value=4.8 Score=40.93 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=21.9
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHH
Q 003262 417 RIVRIATHPSAMRLGYGSTAVELLTR 442 (835)
Q Consensus 417 RIVRIAvhPd~q~mGyGsraL~~L~~ 442 (835)
=|--.=||.+.||+|||.++.+.+..
T Consensus 124 CvLDFYVhEs~QR~G~Gk~LF~~ML~ 149 (200)
T 4b5o_A 124 CILDFYIHESVQRHGHGRELFQYMLQ 149 (200)
T ss_dssp EEEEEEECGGGTTSSHHHHHHHHHHH
T ss_pred eEEEEEechhhhhcCcHHHHHHHHHH
Confidence 36667899999999999999887654
No 409
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=64.37 E-value=7.5 Score=37.70 Aligned_cols=49 Identities=14% Similarity=0.206 Sum_probs=31.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH------cCCCcEEEecCC---hHhHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIA------AGYSNIFVTAPS---PENLKTLFEF 126 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~------~g~~nI~VTAPs---~enl~tlFef 126 (835)
...+.|.|+.|.|||+++-+.+..... .+...|++.... ++.+..+++.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~ 82 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQN 82 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999998765443222 122357777654 4555555543
No 410
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=64.34 E-value=10 Score=39.23 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEE
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFV 112 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~V 112 (835)
...++|+|+.|.||||+|-+.+...-.....+|++
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~ 59 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT 59 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEE
Confidence 46899999999999999987554332221245544
No 411
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=64.02 E-value=9.1 Score=37.11 Aligned_cols=36 Identities=14% Similarity=0.040 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEe
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVT 113 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VT 113 (835)
...++|+|..|.||||+.-+....+-..|+.-+++-
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 468999999999999987665443333454323554
No 412
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=63.88 E-value=5 Score=38.11 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEe
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVT 113 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VT 113 (835)
..++|+|..|.||||++-+. |.. .+...|++.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~L-a~~--~~~g~i~i~ 41 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEAL-ANL--PGVPKVHFH 41 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHH-HTC--SSSCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHH-Hhc--cCCCeEEEc
Confidence 57999999999999987654 322 344456664
No 413
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=63.52 E-value=9.8 Score=39.39 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=41.3
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 003262 662 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLT 708 (835)
Q Consensus 662 ~~Ls~~q~~iLla~gLQ~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~ 708 (835)
..||..|..||..+ .++++..+||++||++.+-|-..++++.+|+-
T Consensus 196 ~~Lt~re~~vl~~~-~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 196 MPLSQREYDIFHWM-SRGKTNWEIATILNISERTVKFHVANVIRKLN 241 (265)
T ss_dssp CCCCHHHHHHHHHH-HTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 47999999988877 69999999999999999999999999888874
No 414
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=63.24 E-value=8.2 Score=37.83 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=30.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH------cCCCcEEEecCC---hHhHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIA------AGYSNIFVTAPS---PENLKTL 123 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~------~g~~nI~VTAPs---~enl~tl 123 (835)
...+.|+|+.|.|||+++-..++.++. .+..-|+|+... ++.+..+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~ 78 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 78 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHH
Confidence 358999999999999988655443221 144468888765 4444443
No 415
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=62.93 E-value=7.5 Score=37.20 Aligned_cols=36 Identities=8% Similarity=0.130 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
..++|+|..|.||||........+ .|+.-+.+.-|.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~~~ 40 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNFPQ 40 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEESSC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEecCC
Confidence 479999999999999876543322 245445555565
No 416
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=62.77 E-value=7.7 Score=36.48 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=16.9
Q ss_pred CcEEEEEcCCCCCHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGL 97 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGl 97 (835)
...++|.|+.|.||||++--
T Consensus 48 ~~~i~vvG~~g~GKSsll~~ 67 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTL 67 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 34799999999999999853
No 417
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=62.14 E-value=8.6 Score=38.71 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=30.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEe-cCCh
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVT-APSP 117 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VT-APs~ 117 (835)
..+++.|.-|.||||........+-..|++.+++| -|..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~ 43 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGG 43 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCC
Confidence 47899999999999999988777778888565444 4553
No 418
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=62.10 E-value=5.9 Score=36.58 Aligned_cols=35 Identities=17% Similarity=0.025 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHh
Q 003262 80 TVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPEN 119 (835)
Q Consensus 80 ~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~en 119 (835)
.++|+|..|.||||+.-.. |.. .|+ .+|.++...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L-~~~--l~~--~~i~~d~~~~ 37 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKL-SKE--LKY--PIIKGSSFEL 37 (173)
T ss_dssp EEEEECSSSSSHHHHHHHH-HHH--HCC--CEEECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHH-HHH--hCC--eeecCccccc
Confidence 6899999999999976543 222 254 4677775443
No 419
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=62.04 E-value=13 Score=39.95 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs 116 (835)
...+.|.|+.|.||||+++..+...-..|.+=.++..+.
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~ 167 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDT 167 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecc
Confidence 458999999999999999987665555554434555543
No 420
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=62.00 E-value=13 Score=38.55 Aligned_cols=46 Identities=24% Similarity=0.355 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCh---------HhHHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP---------ENLKTLFEFV 127 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~---------enl~tlFef~ 127 (835)
+-+.|.|+.|.|||+++-. +|.. .+...|.|..+.. .++..+|+.+
T Consensus 45 ~GvlL~Gp~GtGKTtLaka-la~~--~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a 99 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKA-VANE--SGLNFISVKGPELLNMYVGESERAVRQVFQRA 99 (274)
T ss_dssp SEEEEESSTTSCHHHHHHH-HHHH--TTCEEEEEETTTTCSSTTHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH-HHHH--cCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHH
Confidence 3489999999999998864 3443 3444677776543 3455566554
No 421
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo sapiens}
Probab=61.81 E-value=15 Score=41.56 Aligned_cols=112 Identities=18% Similarity=0.217 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhcccCCChhHHHHhhcCCCceEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCC
Q 003262 315 ELFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSG 394 (835)
Q Consensus 315 E~fLq~~~aLlV~AHYkNsPnDLqlL~DaPah~lfvL~~p~~~~~~~lp~il~viqValEG~is~~~~~~~l~~G~Rp~G 394 (835)
-.+|++|+. |=+-|==.+-+||+.=++ |.-++|+..+|.-+ .++|.+++||+-.+|+.. |...+. ..++..
T Consensus 176 A~iLEKIi~-YEAVH~I~~W~DLkrRL~-pdRRCfaFFHp~mP-----~EPLIfVeVALt~~ia~s-Iq~iL~-~~~~~~ 246 (460)
T 2ygw_A 176 CEVLQKISE-AEAVHPVKNWMDMKRRVG-PYRRCYFFSHCSTP-----GEPLVVLHVALTGDISSN-IQAIVK-EHPPSE 246 (460)
T ss_dssp HHHHHHHHH-SCCSSCCCSHHHHHHHTS-TTEEEEEEEETTBT-----TCCSEEEEEEEESSCCCC-SHHHHS-CCCCC-
T ss_pred HHHHHHHHH-hccccccCCHHHHHHhcC-CCCeEEEecCCCCC-----CCCeEEEeeccccchhhH-HHHHhc-CCCCcc
Confidence 468888864 778888899999985555 89999999998533 369999999999999864 444444 334332
Q ss_pred CchhHHHHHhhccCC-----CCCCcccEEEEEeeCcccccCChHHHHHHHHHHHHhcccccc
Q 003262 395 DQIPWKFSEQFRDAV-----FPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTF 451 (835)
Q Consensus 395 dLIPw~ls~q~~d~~-----f~~lsgaRIVRIAvhPd~q~mGyGsraL~~L~~~~~g~~~~~ 451 (835)
+ -.+.+ |.+.| .|++-.+|..+|..+|+...+..+..++++
T Consensus 247 ~---------~~~~~~~tAIFYSIS-------ntQ~GL~GIsfGnfLIKrVV~~L~~E~P~l 292 (460)
T 2ygw_A 247 T---------AAANKITAAIFYSIS-------LTQQGLQGVELGTFLIKRVVKELQREFPHL 292 (460)
T ss_dssp --------------CCCEEEEEEEE-------ESCGGGTTSCHHHHHHHHHHHHHHHHCTTC
T ss_pred c---------ccccCCCeEEEEeec-------ccccccccccchhHHHHHHHHHHHHhCcCc
Confidence 2 00122 44444 589999999999999999999887766654
No 422
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=61.75 E-value=6.2 Score=38.54 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=17.2
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGLA 98 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGla 98 (835)
..+.|||+.|.||||+.-+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999987654
No 423
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=61.42 E-value=5.1 Score=42.04 Aligned_cols=47 Identities=15% Similarity=0.316 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHH-HHH-----------cC----CCcEEEecCC---hHhHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAG-AIA-----------AG----YSNIFVTAPS---PENLKTLF 124 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~-ai~-----------~g----~~nI~VTAPs---~enl~tlF 124 (835)
.+.+.|+|+.|.|||++.=-.++. ++. .| ..-+||++-. ++.+....
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~ 163 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMA 163 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHH
Confidence 458899999999999965333222 221 23 3347888775 46555443
No 424
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=60.92 E-value=8.8 Score=41.81 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEE
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFV 112 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~V 112 (835)
...++|+|+.|.||||+|.+.+...-..+..+|++
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~ 170 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT 170 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEE
Confidence 45899999999999999997655443332346643
No 425
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=60.90 E-value=5.1 Score=41.47 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=22.6
Q ss_pred CCcH-HHHHHHHHHHHHHhccCCCcEEEEEcCCCCCHHHHHHH
Q 003262 56 CSTL-DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGL 97 (835)
Q Consensus 56 ~~T~-DQakAl~~~~~~i~ek~~r~~v~LTA~RGRGKSAaLGl 97 (835)
+++. +...+|..+--.+...-....++|+|..|.||||+.-+
T Consensus 25 ~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 25 HSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp -------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHH
T ss_pred eEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHH
Confidence 5565 44455554433333300124799999999999997644
No 426
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=60.36 E-value=6.2 Score=37.81 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=19.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIA 100 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA 100 (835)
.+.++|+|+.|.||||++-+.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999976544
No 427
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=60.28 E-value=5.2 Score=39.14 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=19.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIA 100 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA 100 (835)
.++++|+|+.|.||||++-+.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999987654
No 428
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=59.97 E-value=6.7 Score=37.98 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=18.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIA 100 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA 100 (835)
...+.|+|+.|.||||++-+...
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999876533
No 429
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=59.44 E-value=13 Score=35.36 Aligned_cols=35 Identities=20% Similarity=0.117 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEE
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFV 112 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~V 112 (835)
...++|+|..|.||||..-.....+-..|+.-+++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 34789999999999998876555544456533344
No 430
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=58.74 E-value=7.1 Score=37.97 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 003262 80 TVALLAARGRGKSAALGLAIAG 101 (835)
Q Consensus 80 ~v~LTA~RGRGKSAaLGlaiA~ 101 (835)
.+.|+|+.|.||||++-+.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999765443
No 431
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=57.94 E-value=9.9 Score=43.04 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHH-HHHHHHcCCCcEEEec
Q 003262 78 RSTVALLAARGRGKSAALGLA-IAGAIAAGYSNIFVTA 114 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGla-iA~ai~~g~~nI~VTA 114 (835)
.+.+.|+|+.|.|||+++-+. +++++..+...|+|+-
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 468999999999999999875 5777776777899875
No 432
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=57.79 E-value=12 Score=39.34 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCcEEEecC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIA-AGYSNIFVTAP 115 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~-~g~~nI~VTAP 115 (835)
...++|+|..|.||||++...++.+.. .|++=.+|++-
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 458999999999999999987665554 67654555553
No 433
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=57.17 E-value=9 Score=35.92 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=17.3
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGLA 98 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGla 98 (835)
..++|+|..|.||||+.-+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l 28 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEV 28 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHH
Confidence 47899999999999987654
No 434
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=57.17 E-value=7.2 Score=37.70 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=16.4
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 003262 80 TVALLAARGRGKSAALGLA 98 (835)
Q Consensus 80 ~v~LTA~RGRGKSAaLGla 98 (835)
.+.|||+.|.||||+.-+.
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999987654
No 435
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=57.06 E-value=26 Score=33.35 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=21.8
Q ss_pred CCCcEEEEecccCCCHHHHHHhhcCCeEEEEeecc
Q 003262 181 AQVELLVIDEAAAIPLPVVRSLLGPYLVFLSSTVN 215 (835)
Q Consensus 181 ~~adLLvIDEAAAIPlpllk~Ll~~y~vflsSTi~ 215 (835)
..+|++|||=.+.+.......+...-.|++-++..
T Consensus 74 ~~yD~viiD~~~~~~~~~~~~l~~ad~viiv~~~~ 108 (206)
T 4dzz_A 74 ADYDFAIVDGAGSLSVITSAAVMVSDLVIIPVTPS 108 (206)
T ss_dssp TTSSEEEEECCSSSSHHHHHHHHHCSEEEEEECSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCEEEEEecCC
Confidence 46899999988888655444444444444444443
No 436
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=56.97 E-value=17 Score=41.57 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=19.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
...+.|+|+.|.|||+++- ++|..+
T Consensus 108 g~~vll~Gp~GtGKTtlar-~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAK-SIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHH-HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH-HHHHhc
Confidence 4579999999999998765 445554
No 437
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=56.88 E-value=14 Score=36.09 Aligned_cols=60 Identities=27% Similarity=0.271 Sum_probs=35.0
Q ss_pred CCCccccccCCcHHHHHHHHHHHHHHhcc-CCCcEEEEEcCCCCCHHHHHHH-HHHHHHHcCCCcEEEecC
Q 003262 47 FPVGPLIKKCSTLDQGKAVITFLDAILDK-TLRSTVALLAARGRGKSAALGL-AIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 47 ~p~g~Lv~~~~T~DQakAl~~~~~~i~ek-~~r~~v~LTA~RGRGKSAaLGl-aiA~ai~~g~~nI~VTAP 115 (835)
+|+..+-..+..+|.. +..| ...+.++|+|+.|.|||+..-- ++..+...|..-+|+|.-
T Consensus 7 ~~i~ri~TGi~~LD~~---------l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 7 QPVRRVKSGIPGFDEL---------IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp -CCCEECCSCTTTGGG---------TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCeecCCcHHHHHh---------hcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 4666665566666542 1111 1245889999999999987543 333445556544555543
No 438
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=56.88 E-value=17 Score=41.02 Aligned_cols=46 Identities=22% Similarity=0.166 Sum_probs=41.3
Q ss_pred CccHHHHHHHHHHHh----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGM----LGQDISCIQEQMKLEADRIFVLFRKVMTKLT 708 (835)
Q Consensus 663 ~Ls~~q~~iLla~gL----Q~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~ 708 (835)
.|++.|+.|+..... +.+|..+||+.||++...|-.+..++++||-
T Consensus 375 ~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 588998888877665 8999999999999999999999999999987
No 439
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=56.75 E-value=17 Score=38.24 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=19.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIA 100 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA 100 (835)
...+.|+|+.|.||||++-+...
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999986543
No 440
>4gs4_A Alpha-tubulin N-acetyltransferase; acetyl coenzyme A binding, cytosolic; HET: ACO; 2.11A {Homo sapiens}
Probab=56.74 E-value=7.9 Score=40.33 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=22.2
Q ss_pred cEEEEEeeCcccccCChHHHHHHHHHH
Q 003262 416 ARIVRIATHPSAMRLGYGSTAVELLTR 442 (835)
Q Consensus 416 aRIVRIAvhPd~q~mGyGsraL~~L~~ 442 (835)
.=|--.=||.+.||+|||.++.+.+..
T Consensus 123 lCvLDFYVhes~QR~G~Gk~LF~~ML~ 149 (240)
T 4gs4_A 123 LCILDFYIHESVQRHGHGRELFQYMLQ 149 (240)
T ss_dssp EEEEEEEECGGGTTSSHHHHHHHHHHH
T ss_pred ceEEEEEeecceeeeccHHHHHHHHHH
Confidence 345667899999999999999887654
No 441
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=56.66 E-value=11 Score=35.24 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=22.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEE
Q 003262 80 TVALLAARGRGKSAALGLAIAGAIAAGYSNIFV 112 (835)
Q Consensus 80 ~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~V 112 (835)
.++|+|..|.||||..-.....+-..|+.-.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 589999999999998766544433345543333
No 442
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=56.60 E-value=7.6 Score=37.15 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=17.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGLAI 99 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlai 99 (835)
..++|+|+.|.||||++-+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~ 27 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIF 27 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999887643
No 443
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=56.37 E-value=7 Score=38.74 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=17.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGLAI 99 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlai 99 (835)
|++||+|+.|.||++++--.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999875443
No 444
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=56.08 E-value=14 Score=39.44 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
..+.|+|..|.||||+++..++.+-..|.+=.++++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 4789999999999999998766655556544455554
No 445
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=55.37 E-value=13 Score=39.35 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEec
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTA 114 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTA 114 (835)
...+.|.|+.|.||||++...+...-..| .+|.+-+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~-g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLG-KKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTT-CCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEEe
Confidence 45899999999999999998654443333 3565543
No 446
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=54.89 E-value=1.5e+02 Score=30.90 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=34.6
Q ss_pred HHHhccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc--EEEecCChHhHHHHHHHH
Q 003262 70 DAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSN--IFVTAPSPENLKTLFEFV 127 (835)
Q Consensus 70 ~~i~ek~~r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~n--I~VTAPs~enl~tlFef~ 127 (835)
..+. ++.....+++|++|-||..+.-..++.+...|+.. ++.-. ...++..+.+.+
T Consensus 11 ~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 68 (343)
T 1jr3_D 11 AQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-PNTDWNAIFSLC 68 (343)
T ss_dssp HHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-TTCCHHHHHHHH
T ss_pred HHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-CCCCHHHHHHHh
Confidence 3444 45667899999999999888776666666566542 22211 224555555443
No 447
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=54.82 E-value=24 Score=37.76 Aligned_cols=41 Identities=27% Similarity=0.297 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHh
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPEN 119 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~en 119 (835)
...++|+|..|.||||++.-.+..+...|+ +|.|.+-.|..
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~-kV~vi~~Dp~~ 119 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGH-RVAVLAVDPSS 119 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEEEEC---
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCC-ceEEEecCCCC
Confidence 347899999999999999765555545565 56665555544
No 448
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=54.75 E-value=15 Score=38.80 Aligned_cols=35 Identities=20% Similarity=0.452 Sum_probs=25.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEec
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTA 114 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTA 114 (835)
..+.|.|..|.||||+++..+...-..+ .+|.+-+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~-g~V~l~g 135 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEG-TKVLMAA 135 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcC-CeEEEEe
Confidence 4789999999999999998665554444 3565543
No 449
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=54.58 E-value=17 Score=35.34 Aligned_cols=20 Identities=35% Similarity=0.325 Sum_probs=17.0
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGLA 98 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGla 98 (835)
..++|||..|.||||+.-+.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999977654
No 450
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=54.47 E-value=8.2 Score=37.17 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=16.3
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 003262 80 TVALLAARGRGKSAALGLA 98 (835)
Q Consensus 80 ~v~LTA~RGRGKSAaLGla 98 (835)
.+.|||..|.||||+..+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L 21 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMF 21 (204)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 5899999999999987654
No 451
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=54.11 E-value=21 Score=38.39 Aligned_cols=54 Identities=13% Similarity=0.197 Sum_probs=34.0
Q ss_pred CCccccccCCcHHHHHHHHHHHHHHhccC---CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Q 003262 48 PVGPLIKKCSTLDQGKAVITFLDAILDKT---LRSTVALLAARGRGKSAALGLAIAGAIA 104 (835)
Q Consensus 48 p~g~Lv~~~~T~DQakAl~~~~~~i~ek~---~r~~v~LTA~RGRGKSAaLGlaiA~ai~ 104 (835)
|+..++++. .+..+++......+.++. ....+.|+|+.|.||||++-.. +.++.
T Consensus 61 pl~rll~~~--~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L-~~ll~ 117 (321)
T 3tqc_A 61 PLSRLLSFY--VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVL-KALLS 117 (321)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHH-HHHHT
T ss_pred HHHHHHHHh--hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHH-HHHhc
Confidence 555555544 445555555555555542 1237899999999999998764 44443
No 452
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=54.05 E-value=8.3 Score=38.85 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAG 101 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ 101 (835)
...++|+|+.|.||||++-+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999875443
No 453
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=53.78 E-value=9.6 Score=37.39 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=19.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIA 100 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA 100 (835)
...++|+|+.|.||||++-+.+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 45899999999999998876543
No 454
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=53.56 E-value=10 Score=37.36 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcC
Q 003262 80 TVALLAARGRGKSAALGLAIAGAIAAG 106 (835)
Q Consensus 80 ~v~LTA~RGRGKSAaLGlaiA~ai~~g 106 (835)
.+.|+|+.|.||||++.+.+...-..|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 578999999999999998665544444
No 455
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=53.36 E-value=15 Score=40.11 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=37.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKT 122 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~t 122 (835)
...+.+.|+.|.|||+++...+..++..|. .++|.=|..+....
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~-~viv~Dpkge~~~~ 96 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGD-RMVIVDPNGDMLSK 96 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTC-EEEEEEETTHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEEeCCCchhHH
Confidence 456899999999999998888888888884 79999999988653
No 456
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=53.31 E-value=17 Score=38.93 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
...+.++|..|.||||++...++.+-..|.+=.++.+.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34789999999999999987665555556544455544
No 457
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=52.96 E-value=15 Score=40.01 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAI 103 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai 103 (835)
+..++|+|+.|.||||+|-..+...-
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 35899999999999999986554433
No 458
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=52.81 E-value=6.3 Score=42.00 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=19.9
Q ss_pred EEEEEeeCcccccCChHHHHHHH
Q 003262 417 RIVRIATHPSAMRLGYGSTAVEL 439 (835)
Q Consensus 417 RIVRIAvhPd~q~mGyGsraL~~ 439 (835)
-+.-|-|-|.|||+|||+-+++.
T Consensus 147 NLaCIltlP~yQrkGyG~lLI~f 169 (284)
T 2ozu_A 147 NVSCIMILPQYQRKGYGRFLIDF 169 (284)
T ss_dssp EESEEEECGGGTTSSHHHHHHHH
T ss_pred cEEEEEecChhHhccHhHHHHHH
Confidence 45568999999999999988875
No 459
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=52.72 E-value=11 Score=36.47 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=16.9
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGLA 98 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGla 98 (835)
..++|+|..|.||||+.-..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L 38 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAI 38 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47999999999999977653
No 460
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=52.72 E-value=31 Score=34.36 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEec
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTA 114 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTA 114 (835)
+-+.|+|+.|.|||+++-. +|..+ +...|.|..
T Consensus 50 ~g~ll~G~~G~GKTtl~~~-i~~~~--~~~~i~~~~ 82 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARA-VAGEA--RVPFITASG 82 (254)
T ss_dssp SEEEEECCTTSSHHHHHHH-HHHHT--TCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHh--CCCEEEeeH
Confidence 4589999999999998854 34433 333455543
No 461
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=52.63 E-value=9.7 Score=38.29 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=19.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIA 100 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA 100 (835)
...+.|+|+.|.||||++-+...
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999986543
No 462
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=52.43 E-value=5.8 Score=39.36 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=14.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAI 99 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlai 99 (835)
...++|+|+.|.||||++-+.+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999997755
No 463
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=52.07 E-value=19 Score=37.04 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcEEEec
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAA-GYSNIFVTA 114 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~-g~~nI~VTA 114 (835)
...++|+|+.|.||||++-..+..+... |..-++++.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3589999999999999886544433333 543335543
No 464
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=52.05 E-value=14 Score=39.56 Aligned_cols=40 Identities=28% Similarity=0.293 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChH
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPE 118 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~e 118 (835)
...+.|+|..|.||||++-..+......+ .+|.|.+..+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~-g~v~i~~~d~~ 94 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAG-HKVAVLAVDPS 94 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEEECGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCC-CEEEEEEEcCc
Confidence 45899999999999999987655444433 46777776653
No 465
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=52.03 E-value=12 Score=35.04 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.9
Q ss_pred cEEEEEcCCCCCHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGL 97 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGl 97 (835)
..++|+|..|.||||..-.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4789999999999996543
No 466
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=51.91 E-value=17 Score=43.92 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCC
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPS 116 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~--g~~nI~VTAPs 116 (835)
.+-+.|.|++|.|||.+. .+++. |..-+.|.+|+
T Consensus 238 p~GILL~GPPGTGKT~LA-----raiA~elg~~~~~v~~~~ 273 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIA-----RAVANETGAFFFLINGPE 273 (806)
T ss_dssp CCEEEEECCTTSCHHHHH-----HHHHTTTTCEEEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHH-----HHHHHHhCCeEEEEEhHH
Confidence 457999999999999854 45543 44345565543
No 467
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=51.69 E-value=8.9 Score=38.13 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=19.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIA 100 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA 100 (835)
...++|.|+.|.||||++-+.+.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999987654
No 468
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=51.67 E-value=8 Score=36.53 Aligned_cols=18 Identities=33% Similarity=0.398 Sum_probs=16.1
Q ss_pred cEEEEEcCCCCCHHHHHH
Q 003262 79 STVALLAARGRGKSAALG 96 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLG 96 (835)
...+|+|+.|.|||+++-
T Consensus 27 g~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGD 44 (182)
T ss_dssp SEEEEEECTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 378999999999999885
No 469
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=51.42 E-value=24 Score=39.06 Aligned_cols=52 Identities=25% Similarity=0.276 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhccCC-CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Q 003262 63 KAVITFLDAILDKTL-RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 115 (835)
Q Consensus 63 kAl~~~~~~i~ek~~-r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAP 115 (835)
+++..+++.+..+.. .+.++|+|++|.|||++. .++|..+.....-+.|+++
T Consensus 47 ~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la-~ala~~l~~~~~~~~~~~~ 99 (456)
T 2c9o_A 47 EACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA-LAIAQELGSKVPFCPMVGS 99 (456)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH-HHHHHHHCTTSCEEEEEGG
T ss_pred HHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH-HHHHHHhCCCceEEEEeHH
Confidence 344445555554433 357999999999999765 3445443222334455543
No 470
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=50.43 E-value=10 Score=37.38 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=18.6
Q ss_pred ccCCCcEEEEEcCCCCCHHHHHHHH
Q 003262 74 DKTLRSTVALLAARGRGKSAALGLA 98 (835)
Q Consensus 74 ek~~r~~v~LTA~RGRGKSAaLGla 98 (835)
.++-...+.|||+.|.||||+.-..
T Consensus 8 ~~~~~~iIgltG~~GSGKSTva~~L 32 (192)
T 2grj_A 8 HHHHHMVIGVTGKIGTGKSTVCEIL 32 (192)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHH
T ss_pred ccccceEEEEECCCCCCHHHHHHHH
Confidence 3444568999999999999976554
No 471
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=50.41 E-value=7.3 Score=41.38 Aligned_cols=23 Identities=35% Similarity=0.639 Sum_probs=19.6
Q ss_pred EEEEEeeCcccccCChHHHHHHH
Q 003262 417 RIVRIATHPSAMRLGYGSTAVEL 439 (835)
Q Consensus 417 RIVRIAvhPd~q~mGyGsraL~~ 439 (835)
-+.-|-|-|.|||+|||+-+++.
T Consensus 142 NLaCIltlP~yQrkGyG~lLI~f 164 (276)
T 3to7_A 142 NVACILTLPQYQRMGYGKLLIEF 164 (276)
T ss_dssp EESCEEECGGGTTSSHHHHHHHH
T ss_pred eEEEEEecChHHcCCccceeehh
Confidence 34558999999999999998875
No 472
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=50.39 E-value=30 Score=31.49 Aligned_cols=47 Identities=9% Similarity=-0.010 Sum_probs=39.2
Q ss_pred HHHHHhcC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 003262 672 LLYIGMLG-QDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEISSEEI 719 (835)
Q Consensus 672 Lla~gLQ~-Ks~~~v~~el~l~~~Q~lalf~k~i~kl~~~~~~~~~~~i 719 (835)
+..+..++ +|-.+||+++|++.+-|-.. .+++.++...|+..++..+
T Consensus 50 l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~~~~k~~l~~~l 97 (101)
T 1jhg_A 50 IIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAPVELRQWLEEVL 97 (101)
T ss_dssp HHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHccHHHHHHHHHHh
Confidence 33344577 99999999999999888877 8999999999988887765
No 473
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=50.39 E-value=8 Score=36.84 Aligned_cols=19 Identities=37% Similarity=0.438 Sum_probs=17.3
Q ss_pred cEEEEEcCCCCCHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGL 97 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGl 97 (835)
..++|.|+.|.||||++-.
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 5789999999999999985
No 474
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=50.09 E-value=20 Score=39.21 Aligned_cols=35 Identities=20% Similarity=0.452 Sum_probs=25.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEec
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTA 114 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTA 114 (835)
..+.|.|..|.||||+++..+......+ .+|.+-+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~-G~V~l~g 192 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEG-TKVLMAA 192 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEC
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccC-CEEEEec
Confidence 4789999999999999998665554444 3565443
No 475
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=50.00 E-value=13 Score=35.65 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=16.1
Q ss_pred cEEEEEcCCCCCHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGL 97 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGl 97 (835)
..++|||..|.|||++.-.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~ 29 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEM 29 (184)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4799999999999996543
No 476
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=49.63 E-value=8.3 Score=35.21 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=15.7
Q ss_pred cEEEEEcCCCCCHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGL 97 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGl 97 (835)
..++|+|..|.||||..-.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKL 20 (179)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3689999999999996543
No 477
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=49.60 E-value=17 Score=40.48 Aligned_cols=46 Identities=22% Similarity=0.159 Sum_probs=36.6
Q ss_pred CccHHHHHHHHHHHh----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 003262 663 TLSYVQAAVLLYIGM----LGQDISCIQEQMKLEADRIFVLFRKVMTKLT 708 (835)
Q Consensus 663 ~Ls~~q~~iLla~gL----Q~Ks~~~v~~el~l~~~Q~lalf~k~i~kl~ 708 (835)
.|++.|+.|+..... +..|..+||+.||++...|-.+..++++||-
T Consensus 360 ~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 588998888877665 8999999999999999999999999999987
No 478
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=49.42 E-value=24 Score=46.08 Aligned_cols=161 Identities=20% Similarity=0.248 Sum_probs=97.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHhHHHHHHHHHhhhccccccccccceeeecCCCCCCccee
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIV 157 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~~lgy~e~~dy~i~~st~p~~~~aiv 157 (835)
.+.+-|.|+-|.|||++.--++|.+...|-.-+||-++..-. ..+ +..+|..-. ++
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~--~~~------~~~~Gv~~~-~l--------------- 1486 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD--PIY------ARKLGVDID-NL--------------- 1486 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC--HHH------HHHTTCCGG-GC---------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCC--HHH------HHHcCCCHH-He---------------
Confidence 368999999999999999999999999998889999873211 112 222332211 01
Q ss_pred EeeeeeccceeEEeeCCccc----------cccCCCcEEEEecccCCCHH------------------H---HHHhhc--
Q 003262 158 RINIYRQHRQTIQYMEPHEH----------EKLAQVELLVIDEAAAIPLP------------------V---VRSLLG-- 204 (835)
Q Consensus 158 rvni~~~hrq~Iqyi~P~d~----------~~l~~adLLvIDEAAAIPlp------------------l---lk~Ll~-- 204 (835)
.-..|+.. .+-+.+|++|||..||+-.. | |++|.+
T Consensus 1487 ------------~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~ 1554 (1706)
T 3cmw_A 1487 ------------LCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1554 (1706)
T ss_dssp ------------EEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHH
T ss_pred ------------EEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 11233322 23467999999999997432 4 666664
Q ss_pred ---CCeEEEEeeccC--------CcccCCchhHHHHHHhhhcCC-------CCCC-------CcCCCccCCceeEEEecc
Q 003262 205 ---PYLVFLSSTVNG--------YEGTGRSLSLKLLHQLEQQSH-------MPAK-------GVEGSAHGCLFKKIELSE 259 (835)
Q Consensus 205 ---~y~vflsSTi~G--------YEGTGR~fsLKl~~~L~~~~~-------~~~~-------~~~~~~~~r~~~ei~L~e 259 (835)
.-.+||-..+.. =|-|-=|=.|||-.-.|-.-+ +... ....+...+.|++.+++
T Consensus 1555 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~al~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 1633 (1706)
T 3cmw_A 1555 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQ- 1633 (1706)
T ss_dssp HHHTCEEEEEECBC--------CCCCBSSCSHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCCEEEEE-
T ss_pred HhCCcEEEEeeccccccceecCCCccccCcceeeeeeeeeeeeeeccccccCCeeEeeEEEEEEecccCCCCcceEEEE-
Confidence 235667666653 355555667899876653221 0000 00012345667777765
Q ss_pred ccccCCCCchHHHHHHh
Q 003262 260 SIRYAPGDPIESWLNGL 276 (835)
Q Consensus 260 PIRya~gDPvE~WLn~l 276 (835)
|-|..|=.-|.=+-++
T Consensus 1634 -~~~~~~~~~~~~~~~~ 1649 (1706)
T 3cmw_A 1634 -ILYGEGINFYGELVDL 1649 (1706)
T ss_dssp -EETTTEECHHHHHHHH
T ss_pred -EEecCCcCccchHHHH
Confidence 7777776666555544
No 479
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=49.27 E-value=7.8 Score=41.26 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=19.7
Q ss_pred EEEEEeeCcccccCChHHHHHHH
Q 003262 417 RIVRIATHPSAMRLGYGSTAVEL 439 (835)
Q Consensus 417 RIVRIAvhPd~q~mGyGsraL~~ 439 (835)
-+.-|-|-|.|||+|||+-+++.
T Consensus 142 NLaCIltlP~yQrkGyG~lLI~f 164 (278)
T 2pq8_A 142 NVACILTLPPYQRRGYGKFLIAF 164 (278)
T ss_dssp EESCEEECGGGCSSSHHHHHHHH
T ss_pred ceEEEEecChhhccchhHHHHHH
Confidence 34458999999999999999875
No 480
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=49.13 E-value=20 Score=36.14 Aligned_cols=33 Identities=15% Similarity=0.397 Sum_probs=24.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEe
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVT 113 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VT 113 (835)
..++|+|..|.||||.+-.....+-. |+ .++.|
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~-~~-~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVK-DY-DVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT-TS-CEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhc-CC-Cceee
Confidence 47999999999999998776554434 54 45444
No 481
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=49.08 E-value=10 Score=36.02 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=17.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGLAI 99 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlai 99 (835)
..++|+|+.|.||||++-+.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999887653
No 482
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=48.90 E-value=9 Score=38.57 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=18.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLA 98 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGla 98 (835)
...+.|+|+.|.||||+|-+.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYIL 50 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 357899999999999999763
No 483
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=48.90 E-value=25 Score=35.24 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCh
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP 117 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~ 117 (835)
..+++.|.-|.||||........+-..|+.-+..--|..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~ 45 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGG 45 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCC
Confidence 478999999999999998877766667876555556653
No 484
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=48.79 E-value=16 Score=39.39 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=33.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEecCChHh
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPEN 119 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~en 119 (835)
...++|+|..|.|||+++...+..+...|. .|+|-=|..+.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~-~~~~~D~~~~~ 75 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGS-RVIIIDPEREY 75 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEEESSCCS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCC-EEEEEeCCcCH
Confidence 456789999999999999998888877774 68887777653
No 485
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=48.74 E-value=8 Score=41.21 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=19.6
Q ss_pred EEEEEeeCcccccCChHHHHHHH
Q 003262 417 RIVRIATHPSAMRLGYGSTAVEL 439 (835)
Q Consensus 417 RIVRIAvhPd~q~mGyGsraL~~ 439 (835)
-+.-|-|-|.|||+|||+-+|+.
T Consensus 140 NLaCIltlP~yQrkGyG~lLI~f 162 (280)
T 2ou2_A 140 NVACILTLPPYQRRGYGKLLIEF 162 (280)
T ss_dssp EESCEEECGGGTTSSHHHHHHHH
T ss_pred ceEEEEecchHHhcchhHHHHHH
Confidence 34458999999999999998875
No 486
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=48.63 E-value=31 Score=33.52 Aligned_cols=35 Identities=14% Similarity=-0.038 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcEEE
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAI-AAGYSNIFV 112 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai-~~g~~nI~V 112 (835)
...++|+|..|.||||..-.....+- ..|+.-+++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~ 60 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRL 60 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEE
Confidence 45789999999999998776544433 457654555
No 487
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=48.35 E-value=10 Score=38.54 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=18.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLA 98 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGla 98 (835)
...+.|+|+.|.||||+|-+.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l 51 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSAL 51 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 357899999999999999764
No 488
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=48.31 E-value=34 Score=34.97 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=32.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcE-EEecCChHhH
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNI-FVTAPSPENL 120 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI-~VTAPs~enl 120 (835)
..+++.|..|.||||........+-..|++.+ +.-.|+...+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~ 70 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLL 70 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHH
Confidence 47999999999999999988777777888744 4445654333
No 489
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=48.27 E-value=10 Score=38.64 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=18.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLA 98 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGla 98 (835)
...+.|+|+.|.||||+|-+.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l 48 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLL 48 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 357899999999999999763
No 490
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=48.08 E-value=15 Score=34.10 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.2
Q ss_pred cEEEEEcCCCCCHHHHHH
Q 003262 79 STVALLAARGRGKSAALG 96 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLG 96 (835)
..++|+|..|.||||..-
T Consensus 3 ~~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEecCCCCCHHHHHH
Confidence 468999999999999643
No 491
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=47.97 E-value=19 Score=41.36 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEe
Q 003262 78 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVT 113 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VT 113 (835)
...+.|.|..|.||||+++..+...-..| .+|++-
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~-G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQG-KSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcC-CeEEEe
Confidence 34789999999999999998654443344 467764
No 492
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=47.79 E-value=15 Score=34.96 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=17.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLA 98 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGla 98 (835)
...++|||..|.||||+..+.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~L 28 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALL 28 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 357999999999999976543
No 493
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=47.72 E-value=14 Score=36.88 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGLAI 99 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlai 99 (835)
..++|+|+.|.||||++-+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999887643
No 494
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=47.61 E-value=13 Score=37.14 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=19.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAIA 100 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlaiA 100 (835)
.++++|+|+.|.||||++-..+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999876543
No 495
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=47.36 E-value=14 Score=34.75 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=16.5
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGLA 98 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGla 98 (835)
..++|+|..|.||||..-..
T Consensus 5 ~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36899999999999976543
No 496
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=47.25 E-value=5.6 Score=38.36 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCC
Q 003262 80 TVALLAARGRGKSAALGLAIAGAIAAGY 107 (835)
Q Consensus 80 ~v~LTA~RGRGKSAaLGlaiA~ai~~g~ 107 (835)
.++|+|.-|.||||.+-..+..+-..|+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~ 29 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGR 29 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 5899999999999998776554433454
No 497
>4hkf_A Alpha-tubulin N-acetyltransferase; tubulin acetyltransferase, MEC-17, GNAT, acetyl-COA, GNAT FO transferase; HET: ACO; 1.70A {Danio rerio} PDB: 4h6u_A* 4h6z_A*
Probab=47.21 E-value=14 Score=37.25 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=23.6
Q ss_pred ccEEEEEeeCcccccCChHHHHHHHHHH
Q 003262 415 GARIVRIATHPSAMRLGYGSTAVELLTR 442 (835)
Q Consensus 415 gaRIVRIAvhPd~q~mGyGsraL~~L~~ 442 (835)
-+-|-..=|||.+||+|||+++++.+..
T Consensus 114 ~lcIlDFyV~es~QR~G~Gk~lfe~mL~ 141 (191)
T 4hkf_A 114 PLCVLDFYVTETLQRHGYGSELFDFMLK 141 (191)
T ss_dssp CEEEEEEEECGGGTTSSHHHHHHHHHHH
T ss_pred ccEEEeEEEeeeeeccCHHHHHHHHHHH
Confidence 3568888999999999999998876643
No 498
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=47.02 E-value=23 Score=33.12 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEe
Q 003262 79 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVT 113 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGlaiA~ai~~g~~nI~VT 113 (835)
..++|+|..|.||||..-.....+-..|+.-.+|.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 47899999999999976554333323343224453
No 499
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=47.02 E-value=13 Score=36.23 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=18.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHH
Q 003262 78 RSTVALLAARGRGKSAALGLAI 99 (835)
Q Consensus 78 r~~v~LTA~RGRGKSAaLGlai 99 (835)
...++|.|+.|.||||++-+.+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLR 41 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999997643
No 500
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=46.93 E-value=16 Score=34.46 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=16.7
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q 003262 79 STVALLAARGRGKSAALGLA 98 (835)
Q Consensus 79 ~~v~LTA~RGRGKSAaLGla 98 (835)
..++|+|..|.||||+.-..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999976543
Done!